Psyllid ID: psy1766

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
Protein Sequence
MSIICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKVKTSSNPSYLPLQYTSSALVRGGFNWGLHFKWENLPKGTHTW
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEEEEcccHHHHHHHHHHHHcccHHHHHcEEEEEEcccccccccHHHHHHHHHccccccEEEEEcccccHHHHHHHHccccccccEEEEEEEEEccccccHHHHHHHHHccccEEEEEEEEEEEccccEEEcccccEEEEEccEEEEEEEccHHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHccccccccccccEEEEEEccHHHHHHHHHHHHHHHccHHHHHHHEEEEccccccHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHcHHHccccEEEEEccccHcccccHHHHHHHHHHcccEEEEEEEEEEcccccEEccccccEcccccEEEEEEccccHHHHHHcccccccccccccccccEEEEcHHHHHcccccccccc
Coil and Loop (DISEMBL)
msiicanqtfpstlpstsVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVndfseypsnlhgEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHievnthwlepllvpiaertntvtvpiidiinadtfqytssalvrggfnwglhfkwenlpkvktssnpsylplqytssalvrggfnwglhfkwenlpkgthtw
Flexible Loop (DISEMBL)
msiicanqtfpstlpsTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFvkglnngrVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKVKTSSNPSYLPLQYTSSALVRGGFNWGlhfkwenlpkgthtw
Low Complexity Region (SEG)
MSIICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKVKTSSNPSYLPLQYTSSALVRGGFNWGLHFKWENLPKGTHTW
Disordered region (IsUnstruct)
***ICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKVKTSSNPSYLPLQYTSSALVRGGFNWGLHFKWENL*******
Disordered Region (DISOPRED)
**IICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENL****************TSSALVRGGFNWGLHFKWENLPKGTHTW
Disordered Region (DISEMBL)
MSIICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKVKTSSNPSYLPLQYTSSALVRGGFNWGLHFKWENLPKGTHTW
Disordered Region (DISPRO)
*SIICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKVKTSSNPSYLPLQYTSSALVRGGFNWGLHFKWENLPKGTHTW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSIICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKVKTSSNPSYLPLQYTSSALVRGGFNWGLHFKWENLPKGTHTW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	214	2.2.26 [Sep-21-2011]
Q6P6V1	608	Polypeptide N-acetylgalac	yes	N/A	0.775	0.273	0.544	2e-49
Q921L8	608	Polypeptide N-acetylgalac	yes	N/A	0.775	0.273	0.538	4e-49
Q8MVS5	632	Polypeptide N-acetylgalac	yes	N/A	0.775	0.262	0.551	4e-49
Q8NCW6	608	Polypeptide N-acetylgalac	yes	N/A	0.775	0.273	0.550	2e-47
Q9D4M9	431	Putative polypeptide N-ac	no	N/A	0.771	0.382	0.479	6e-41
Q7Z4T8	443	Putative polypeptide N-ac	no	N/A	0.766	0.370	0.465	3e-39
Q95JX4	443	Putative polypeptide N-ac	N/A	N/A	0.757	0.365	0.458	1e-38
Q9JJ61	558	Putative polypeptide N-ac	no	N/A	0.747	0.286	0.488	3e-38
O61394	618	Probable N-acetylgalactos	yes	N/A	0.775	0.268	0.476	7e-38
Q8N428	558	Putative polypeptide N-ac	no	N/A	0.747	0.286	0.482	8e-38

>sp|Q6P6V1|GLT11_RAT Polypeptide N-acetylgalactosaminyltransferase 11 OS=Rattus norvegicus GN=Galnt11 PE=2 SV=1

 Score =  195 bits (495), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/167 (54%), Positives = 123/167 (73%), Gaps = 1/167 (0%)

Query: 5   CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
           C  +++P+ LP+ SV+ICFYNE  + L R+V +++ RT   LLHEIILV+D S++  +L 
Sbjct: 141 CRGKSYPTDLPTASVVICFYNEAFSALLRTVHSVVDRTPAHLLHEIILVDDSSDF-DDLK 199

Query: 65  GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
           GE++ +++     +V + R  KREGLIR RM GA +ATG+VLVFLDSH EVN  WL+PLL
Sbjct: 200 GELDEYIQRYLPAKVKVIRNMKREGLIRGRMIGAAHATGEVLVFLDSHCEVNVMWLQPLL 259

Query: 125 VPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLP 171
             I E  +TV  P+IDII+ADT  Y+SS +VRGGFNWGLHFKW+ +P
Sbjct: 260 AIILEDPHTVVCPVIDIISADTLAYSSSPVVRGGFNWGLHFKWDLVP 306

Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Displays the same enzyme activity toward Muc1, Muc4.1, and EA2 than GALNT1. Does not appear to be involved in glycosylation of erythropoietin.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 4EC: 1

>sp|Q921L8|GLT11_MOUSE Polypeptide N-acetylgalactosaminyltransferase 11 OS=Mus musculus GN=Galnt11 PE=2 SV=1

 Score =  194 bits (493), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 90/167 (53%), Positives = 123/167 (73%), Gaps = 1/167 (0%)

Query: 5   CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
           C  +++P+ LP+ S++ICFYNE  + L R+V +++ RT   LLHEIILV+D S++  +L 
Sbjct: 141 CRRKSYPTDLPTASIVICFYNEAFSALLRTVHSVVDRTPAHLLHEIILVDDSSDF-DDLK 199

Query: 65  GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
           GE++ +++     +V + R  KREGLIR RM GA +ATG+VLVFLDSH EVN  WL+PLL
Sbjct: 200 GELDEYIQRYLPAKVKVIRNMKREGLIRGRMIGAAHATGEVLVFLDSHCEVNVMWLQPLL 259

Query: 125 VPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLP 171
             I E  +TV  P+IDII+ADT  Y+SS +VRGGFNWGLHFKW+ +P
Sbjct: 260 AIILEDPHTVVCPVIDIISADTLAYSSSPVVRGGFNWGLHFKWDLVP 306

Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Displays the same enzyme activity toward Muc1, Muc4.1, and EA2 than GALNT1. Does not appear to be involved in glycosylation of erythropoietin.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|Q8MVS5|GLT35_DROME Polypeptide N-acetylgalactosaminyltransferase 35A OS=Drosophila melanogaster GN=Pgant35A PE=1 SV=2

 Score =  194 bits (493), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 96/174 (55%), Positives = 121/174 (69%), Gaps = 8/174 (4%)

Query: 4   ICANQ--TFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPS 61
           +C  Q  T    LP  S+++CFYNEH  TL RS++T+L RT   LL EIILV+D S+ P 
Sbjct: 135 VCDRQETTEAENLPQASIVMCFYNEHKMTLMRSIKTVLERTPSYLLREIILVDDHSDLPE 194

Query: 62  ---NLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTH 118
              +LHG++   +K  N   +   +  +REGLIR+R+ GA+ A G VLVFLDSHIEVN  
Sbjct: 195 LEFHLHGDLRARLKYDN---LRYIKNEQREGLIRSRVIGAREAVGDVLVFLDSHIEVNQQ 251

Query: 119 WLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPK 172
           WLEPLL  I     T+ VP+ID+INADTF+YT S LVRGGFNWGLHF+WENLP+
Sbjct: 252 WLEPLLRLIKSENATLAVPVIDLINADTFEYTPSPLVRGGFNWGLHFRWENLPE 305

Essential glycotransferase, which catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. It can both act as a peptide transferase that transfers GalNAc onto unmodified peptide substrates, and as a glycopeptide transferase that requires the prior addition of a GalNAc on a peptide before adding additional GalNAc moieties.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|Q8NCW6|GLT11_HUMAN Polypeptide N-acetylgalactosaminyltransferase 11 OS=Homo sapiens GN=GALNT11 PE=2 SV=2

 Score =  188 bits (478), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 92/167 (55%), Positives = 123/167 (73%), Gaps = 1/167 (0%)

Query: 5   CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
           C  + +P  LP+ SV+ICFYNE  + L R+V +++ RT   LLHEIILV+D S++  +L 
Sbjct: 141 CKEKFYPPDLPAASVVICFYNEAFSALLRTVHSVIDRTPAHLLHEIILVDDDSDF-DDLK 199

Query: 65  GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
           GE++ +V+    G++ + R +KREGLIR RM GA +ATG+VLVFLDSH EVN  WL+PLL
Sbjct: 200 GELDEYVQKYLPGKIKVIRNTKREGLIRGRMIGAAHATGEVLVFLDSHCEVNVMWLQPLL 259

Query: 125 VPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLP 171
             I E  +TV  P+IDII+ADT  Y+SS +VRGGFNWGLHFKW+ +P
Sbjct: 260 AAIREDRHTVVCPVIDIISADTLAYSSSPVVRGGFNWGLHFKWDLVP 306

Catalyzes the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor. Displays the same enzyme activity toward Muc1, Muc4.1, and EA2 than GALNT1. Does not appear to be involved in glycosylation of erythropoietin.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|Q9D4M9|GLTL5_MOUSE Putative polypeptide N-acetylgalactosaminyltransferase-like protein 5 OS=Mus musculus GN=Galntl5 PE=2 SV=2

 Score =  167 bits (422), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 80/167 (47%), Positives = 115/167 (68%), Gaps = 2/167 (1%)

Query: 4   ICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL 63
           IC  + +P  LP+ S+IICFYNE   TL R+V ++++ + Q LL EIILV+D SE+  +L
Sbjct: 104 ICQQKHYPFNLPTASIIICFYNEEFNTLLRAVSSVVNLSPQHLLEEIILVDDMSEF-DDL 162

Query: 64  HGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPL 123
             +++ +++ +  G+V L R  KREGLIR++M GA  A+G +LVFLDSH EVN  WLEPL
Sbjct: 163 KDKLDYYLE-IFRGKVKLIRNKKREGLIRSKMIGASRASGDILVFLDSHCEVNRVWLEPL 221

Query: 124 LVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENL 170
           L  IA+    V  PIID+IN  T  Y ++ +VRG F+W L+ +W+N+
Sbjct: 222 LHAIAKDHKMVVCPIIDVINELTLDYMAAPIVRGAFDWNLNLRWDNV 268

May catalyze the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q7Z4T8|GLTL5_HUMAN Putative polypeptide N-acetylgalactosaminyltransferase-like protein 5 OS=Homo sapiens GN=GALNTL5 PE=2 SV=3

 Score =  161 bits (408), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/172 (46%), Positives = 110/172 (63%), Gaps = 8/172 (4%)

Query: 2   SIICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFS---E 58
           S +C  + +P+ LP+ S++ICFYNE    L++++ ++ + T    L EIILV+D S   +
Sbjct: 121 SKMCLQKHYPARLPTASIVICFYNEECNALFQTMSSVTNLTPHYFLEEIILVDDMSKVDD 180

Query: 59  YPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTH 118
               L   +ETF      G+V + R  KREGLIRAR+ GA +A+G VLVFLDSH EVN  
Sbjct: 181 LKEKLDYHLETF-----RGKVKIIRNKKREGLIRARLIGASHASGDVLVFLDSHCEVNRV 235

Query: 119 WLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENL 170
           WLEPLL  IA+    V  P+ID+I+  T +Y  S LVRG F+W L FKW+N+
Sbjct: 236 WLEPLLHAIAKDPKMVVCPLIDVIDDRTLEYKPSPLVRGTFDWNLQFKWDNV 287

May catalyze the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q95JX4|GLTL5_MACFA Putative polypeptide N-acetylgalactosaminyltransferase-like protein 5 OS=Macaca fascicularis GN=GALNTL5 PE=2 SV=2

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 109/170 (64%), Gaps = 8/170 (4%)

Query: 4   ICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPS-- 61
           +C  + +P+ LP+ S++ICF+NE    L+R+V ++++ T    L EIILV+D SE     
Sbjct: 123 MCLQKHYPARLPTASIVICFHNEEFHALFRTVSSVMNLTPHYFLEEIILVDDMSEVDDLK 182

Query: 62  -NLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWL 120
             L   +ETF      G++ + R  KREGLIRAR+ GA +A+G VLV LDSH EVN  WL
Sbjct: 183 EKLDYHLETF-----RGKIKIIRNKKREGLIRARLIGASHASGDVLVILDSHCEVNRVWL 237

Query: 121 EPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENL 170
           EPLL  IA+    V  P+ID+I+  T +Y  S +VRG F+W L FKW+N+
Sbjct: 238 EPLLHAIAKDPKMVVRPLIDVIDDRTLEYKPSPVVRGAFDWNLQFKWDNV 287

May catalyze the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q9JJ61|GLTL1_MOUSE Putative polypeptide N-acetylgalactosaminyltransferase-like protein 1 OS=Mus musculus GN=Galntl1 PE=2 SV=2

 Score =  158 bits (399), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 82/168 (48%), Positives = 108/168 (64%), Gaps = 8/168 (4%)

Query: 5   CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
           C + ++ S LP+TSVII F+NE  +TL R+V+++L+RT  SL+ EIILV+DFS  P    
Sbjct: 113 CPSLSYSSDLPATSVIITFHNEARSTLLRTVKSVLNRTPASLIQEIILVDDFSSDP---- 168

Query: 65  GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
              E  +      +V   R  KREGLIR+R+ GA  A   VL FLDSH EVN  WL+P+L
Sbjct: 169 ---EDCLLLTRIPKVKCLRNDKREGLIRSRVRGADVAGATVLTFLDSHCEVNVEWLQPML 225

Query: 125 VPIAERTNTVTVPIIDIINADTFQY-TSSALVRGGFNWGLHFKWENLP 171
             + E    V  PIID+I+ D F Y  +SA +RGGF+W LHFKWE +P
Sbjct: 226 QRVMEDHTRVVSPIIDVISLDNFAYLAASADLRGGFDWSLHFKWEQIP 273

May catalyze the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

EC: 1

>sp|O61394|GALT6_CAEEL Probable N-acetylgalactosaminyltransferase 6 OS=Caenorhabditis elegans GN=gly-6 PE=2 SV=1

 Score =  157 bits (396), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 80/168 (47%), Positives = 107/168 (63%), Gaps = 2/168 (1%)

Query: 5   CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
           C N T+P  LP+TSVII ++NE  +TL R+V +++ R+ + LL EIILV+DFS+     +
Sbjct: 147 CRNMTYPDNLPTTSVIIVYHNEAYSTLLRTVWSVIDRSPKELLKEIILVDDFSDREFLRY 206

Query: 65  GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
             ++T +K L    + + R+ +R GLIRARM GA+ A G VL FLDSH E    WLEPLL
Sbjct: 207 PTLDTTLKPLPTD-IKIIRSKERVGLIRARMMGAQEAQGDVLTFLDSHCECTKGWLEPLL 265

Query: 125 VPIAERTNTVTVPIIDIINADTFQYTSS-ALVRGGFNWGLHFKWENLP 171
             I      V  P+IDIIN +TFQY     + RGGFNW L F+W  +P
Sbjct: 266 TRIKLNRKAVPCPVIDIINDNTFQYQKGIEMFRGGFNWNLQFRWYGMP 313

Probable glycopeptide transferase involved in O-linked oligosaccharide biosynthesis. Glycopeptide transferases catalyze the transfer of an N-acetyl-D-galactosamine residue to an already glycosylated peptide (By similarity). In contrast to other members of the family, it does not act as a peptide transferase that transfers GalNAc onto serine or threonine residue on peptides that have been tested. Some peptide transferase activity is however not excluded, considering that its appropriate peptide substrate may remain unidentified.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q8N428|GLTL1_HUMAN Putative polypeptide N-acetylgalactosaminyltransferase-like protein 1 OS=Homo sapiens GN=GALNTL1 PE=2 SV=2

 Score =  156 bits (395), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 81/168 (48%), Positives = 108/168 (64%), Gaps = 8/168 (4%)

Query: 5   CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
           C + ++ S LP+TSVII F+NE  +TL R+V+++L+RT  +L+ EIILV+DFS  P    
Sbjct: 113 CPSVSYSSDLPATSVIITFHNEARSTLLRTVKSVLNRTPANLIQEIILVDDFSSDP---- 168

Query: 65  GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
              E  +      +V   R  +REGLIR+R+ GA  A   VL FLDSH EVNT WL P+L
Sbjct: 169 ---EDCLLLTRIPKVKCLRNDRREGLIRSRVRGADVAAATVLTFLDSHCEVNTEWLPPML 225

Query: 125 VPIAERTNTVTVPIIDIINADTFQY-TSSALVRGGFNWGLHFKWENLP 171
             + E    V  PIID+I+ D F Y  +SA +RGGF+W LHFKWE +P
Sbjct: 226 QRVKEDHTRVVSPIIDVISLDNFAYLAASADLRGGFDWSLHFKWEQIP 273

May catalyze the initial reaction in O-linked oligosaccharide biosynthesis, the transfer of an N-acetyl-D-galactosamine residue to a serine or threonine residue on the protein receptor.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 4

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
322799307	338	hypothetical protein SINV_03796 [Solenop	0.780	0.494	0.636	2e-58
156544564	637	PREDICTED: polypeptide N-acetylgalactosa	0.780	0.262	0.642	1e-57
340727930	643	PREDICTED: polypeptide N-acetylgalactosa	0.780	0.259	0.619	2e-56
332021082	580	Polypeptide N-acetylgalactosaminyltransf	0.780	0.287	0.613	3e-56
350400046	643	PREDICTED: polypeptide N-acetylgalactosa	0.780	0.259	0.601	7e-56
383862333	637	PREDICTED: polypeptide N-acetylgalactosa	0.780	0.262	0.601	1e-55
307186272	667	Polypeptide N-acetylgalactosaminyltransf	0.780	0.250	0.619	4e-55
307198758	606	Polypeptide N-acetylgalactosaminyltransf	0.775	0.273	0.597	4e-54
242020636	623	UDP-GalNAc:polypeptide N-acetylgalactosa	0.831	0.285	0.575	3e-53
321469963	498	hypothetical protein DAPPUDRAFT_224457 [	0.836	0.359	0.569	4e-53

>gi|322799307|gb|EFZ20695.1| hypothetical protein SINV_03796 [Solenopsis invicta]

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 107/168 (63%), Positives = 133/168 (79%), Gaps = 1/168 (0%)

Query: 4   ICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL 63
           +C  Q +P+ LP+ S+IICFYNEH  TL RS+ T+L RT  +LLHEIILVND+S+  S L
Sbjct: 157 LCGAQKYPANLPNASIIICFYNEHYTTLLRSLHTVLERTPMALLHEIILVNDYSD-SSAL 215

Query: 64  HGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPL 123
           H +++ +++   + RV L++T KREGLIRAR+FGA+ ATGKVL+FLDSHIEVN  W+EPL
Sbjct: 216 HEKIKVYIRNNFDDRVRLFKTEKREGLIRARVFGARKATGKVLIFLDSHIEVNEMWIEPL 275

Query: 124 LVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLP 171
           L  IA   N V +P+IDIINADTFQYT S LVRGGFNWGLHFKW+NLP
Sbjct: 276 LSRIAYSRNIVPMPVIDIINADTFQYTGSPLVRGGFNWGLHFKWDNLP 323

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156544564|ref|XP_001602677.1| PREDICTED: polypeptide N-acetylgalactosaminyltransferase 35A-like [Nasonia vitripennis]

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 108/168 (64%), Positives = 131/168 (77%), Gaps = 1/168 (0%)

Query: 4   ICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL 63
           +C NQT+   LP+ S++ICFYNEH  TL RS+ ++L RT + LLHEIIL+NDFS+  S L
Sbjct: 161 LCKNQTYDQKLPNASIVICFYNEHYNTLLRSLYSILDRTPKHLLHEIILINDFSDSKS-L 219

Query: 64  HGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPL 123
           H +V  +VK   + +V  YRT +REGLIRARMFGAK ATG+VLVFLDSHIEVN  WLEPL
Sbjct: 220 HEQVRDYVKQNFDNKVKYYRTERREGLIRARMFGAKKATGEVLVFLDSHIEVNKMWLEPL 279

Query: 124 LVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLP 171
           L  I+     V +P+IDIINADTFQY+SS LVRGGFNWGLHFKW++LP
Sbjct: 280 LARISHSRTIVPMPVIDIINADTFQYSSSPLVRGGFNWGLHFKWDSLP 327

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727930|ref|XP_003402286.1| PREDICTED: polypeptide N-acetylgalactosaminyltransferase 35A-like [Bombus terrestris]

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/168 (61%), Positives = 131/168 (77%), Gaps = 1/168 (0%)

Query: 4   ICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL 63
           +C  Q + S LP+ S++ICFYNEH  TL RS+ +++ RT  SLLHEIILVND+S+  + L
Sbjct: 163 LCEIQKYSSKLPNASIVICFYNEHYMTLLRSLHSIIDRTPASLLHEIILVNDWSDSKA-L 221

Query: 64  HGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPL 123
           H +++T++    NG+V  Y+T KREGLIRARMFGA+ ATG+VL+FLDSHIEVN  W+EPL
Sbjct: 222 HEKIKTYIVNNFNGKVKFYKTEKREGLIRARMFGARKATGEVLIFLDSHIEVNKRWIEPL 281

Query: 124 LVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLP 171
           L  IA+    V +PIIDIIN DTFQYT S LVRGGFNWGLHFKW+N+P
Sbjct: 282 LSQIAQSKTIVAMPIIDIINPDTFQYTGSPLVRGGFNWGLHFKWDNVP 329

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021082|gb|EGI61469.1| Polypeptide N-acetylgalactosaminyltransferase 35A [Acromyrmex echinatior]

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 103/168 (61%), Positives = 130/168 (77%), Gaps = 1/168 (0%)

Query: 4   ICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL 63
           +C  Q +P+ LP+ S+IICFYNEH  TL RS+ ++L +T   LLHEIILVND+S+    L
Sbjct: 100 LCKMQKYPANLPNASIIICFYNEHYTTLLRSLHSILEKTPTVLLHEIILVNDYSD-SDTL 158

Query: 64  HGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPL 123
           H  ++ +++   N RV L++T +REGLIRAR+FGA+ ATGKVL+FLDSHIEVN  W+EPL
Sbjct: 159 HENIKVYIRNNFNDRVRLFKTERREGLIRARVFGARKATGKVLIFLDSHIEVNEIWIEPL 218

Query: 124 LVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLP 171
           L  IA   N + +P+IDIINADTFQYT S LVRGGFNWGLHFKW+NLP
Sbjct: 219 LSRIAYSRNIIPMPVIDIINADTFQYTGSPLVRGGFNWGLHFKWDNLP 266

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400046|ref|XP_003485719.1| PREDICTED: polypeptide N-acetylgalactosaminyltransferase 35A-like [Bombus impatiens]

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 101/168 (60%), Positives = 130/168 (77%), Gaps = 1/168 (0%)

Query: 4   ICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL 63
           +C  Q + S LP+ S++ICFYNEH  TL RS+ +++ RT  SLLHEIILVND+S+  + L
Sbjct: 163 LCEIQKYSSKLPNASIVICFYNEHYMTLLRSLHSIIDRTPASLLHEIILVNDWSDSKA-L 221

Query: 64  HGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPL 123
           H ++ET++    NG+V  ++T KREGLIRARMFGA+ ATG++L+FLDSHIEVN  W+EPL
Sbjct: 222 HEKIETYIANNFNGKVKFFKTEKREGLIRARMFGARKATGEILIFLDSHIEVNKRWIEPL 281

Query: 124 LVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLP 171
           L  IA     + +P+IDIIN DTFQYT S LVRGGFNWGLHFKW+N+P
Sbjct: 282 LSQIAHSKTIIAMPVIDIINPDTFQYTGSPLVRGGFNWGLHFKWDNVP 329

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862333|ref|XP_003706638.1| PREDICTED: polypeptide N-acetylgalactosaminyltransferase 35A-like [Megachile rotundata]

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 101/168 (60%), Positives = 129/168 (76%), Gaps = 1/168 (0%)

Query: 4   ICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL 63
           +C  Q +P+ LP+ S++ICFYNEH  TL RS+ +++ RT + LLHEIILVND+S+    L
Sbjct: 158 LCQMQQYPNKLPNASIVICFYNEHYMTLLRSIHSIIERTPKHLLHEIILVNDWSD-SKEL 216

Query: 64  HGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPL 123
           H +++ F+    + +V  ++T KREGLIRARMFGA+ ATG+VL+FLDSHIEVN  W+EPL
Sbjct: 217 HEKIKAFINNNFDRKVKFFKTEKREGLIRARMFGARKATGEVLIFLDSHIEVNKMWIEPL 276

Query: 124 LVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLP 171
           L  IA     V +P+IDIINADTFQYT+S LVRGGFNWGLHFKWE LP
Sbjct: 277 LSRIAHSKTIVAMPVIDIINADTFQYTASPLVRGGFNWGLHFKWEQLP 324

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186272|gb|EFN71935.1| Polypeptide N-acetylgalactosaminyltransferase 35A [Camponotus floridanus]

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 104/168 (61%), Positives = 127/168 (75%), Gaps = 1/168 (0%)

Query: 4   ICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL 63
           +C  Q + S LP+ S+IICFYNEH  TL RS+ ++L RT  +LLHEIILVNDFS+    L
Sbjct: 187 LCKTQKYSSNLPNASIIICFYNEHYTTLLRSLHSILERTPAALLHEIILVNDFSD-SDIL 245

Query: 64  HGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPL 123
           H ++  ++K     +V L++T KREGLIRAR+FGA+ ATG VL+FLDSHIEVN  W+EPL
Sbjct: 246 HEKIHAYIKNNFGAKVRLFKTKKREGLIRARVFGARKATGDVLIFLDSHIEVNEIWIEPL 305

Query: 124 LVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLP 171
           L  IA     V +P+IDIINADTFQYT S LVRGGFNWGLHFKW+NLP
Sbjct: 306 LSRIAYSKTIVPMPVIDIINADTFQYTGSPLVRGGFNWGLHFKWDNLP 353

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198758|gb|EFN79561.1| Polypeptide N-acetylgalactosaminyltransferase 35A [Harpegnathos saltator]

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 101/169 (59%), Positives = 130/169 (76%), Gaps = 3/169 (1%)

Query: 4   ICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSN- 62
           +C  + +P+ LP+ S+IICFYNEH  TL RS+ +++ +T  SLLHEIILVND+S+  SN 
Sbjct: 126 LCRARKYPTNLPNASIIICFYNEHYMTLLRSLHSIIDKTPTSLLHEIILVNDYSD--SNI 183

Query: 63  LHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEP 122
           LH +++ ++    + +V  ++T KREGLIRAR+FGA+ ATG VL+FLDSHIEVN  W+EP
Sbjct: 184 LHEKIKVYITNNFDAKVQFFKTDKREGLIRARVFGARKATGDVLIFLDSHIEVNEVWIEP 243

Query: 123 LLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLP 171
           LL  IA     V +P+IDIINADTFQYT S LVRGGFNWGLHFKW+NLP
Sbjct: 244 LLSRIAHSKTIVAMPVIDIINADTFQYTGSPLVRGGFNWGLHFKWDNLP 292

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020636|ref|XP_002430758.1| UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase, putative [Pediculus humanus corporis] gi|212515955|gb|EEB18020.1| UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase, putative [Pediculus humanus corporis]

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 103/179 (57%), Positives = 129/179 (72%), Gaps = 1/179 (0%)

Query: 4   ICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL 63
           +C  + +   LP+ SVIICFYNEH  TL RS+ ++L RT   LL EIILVNDFS+  + L
Sbjct: 147 LCKKKKYSKNLPTASVIICFYNEHFTTLLRSIYSVLERTPSYLLKEIILVNDFSDL-AGL 205

Query: 64  HGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPL 123
           H  +  +V      +V L+++ KR GLIRAR+FG++ A+G VLVFLDSHIEVN +WL+PL
Sbjct: 206 HRNISNYVNTNFTDKVKLFKSKKRLGLIRARIFGSRKASGDVLVFLDSHIEVNVNWLQPL 265

Query: 124 LVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKVKTSSNPSYL 182
           L  I +    V VPIIDIINADTF+Y+SS LVRGGFNWGLHFKWENLPK    SN  ++
Sbjct: 266 LSRIVDSKKNVVVPIIDIINADTFKYSSSPLVRGGFNWGLHFKWENLPKSTLKSNEDFV 324

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321469963|gb|EFX80941.1| hypothetical protein DAPPUDRAFT_224457 [Daphnia pulex]

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 103/181 (56%), Positives = 130/181 (71%), Gaps = 2/181 (1%)

Query: 4   ICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFS--EYPS 61
           +C  Q +P    +TSVIICFYNE P+TL+R+V ++L +T   LLHE++LV+D S  E   
Sbjct: 11  LCQTQEYPKLYLNTSVIICFYNEDPSTLFRTVHSVLDQTPAELLHEVLLVDDSSDGELLG 70

Query: 62  NLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLE 121
           N+H EVE FV      +V L +T KREGLIRAR+FGAK ATG+VL+FLDSH EVN  W++
Sbjct: 71  NIHNEVEEFVGKNFPPKVQLLKTMKREGLIRARIFGAKKATGQVLIFLDSHCEVNREWVQ 130

Query: 122 PLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKVKTSSNPSY 181
           PL+  I E    V  PIIDIIN+DTFQYTSS LVRGGFNWGLHFKW++LP     +N  +
Sbjct: 131 PLIARIQENRTFVVTPIIDIINSDTFQYTSSPLVRGGFNWGLHFKWDSLPDDTLKTNEDF 190

Query: 182 L 182
           +
Sbjct: 191 V 191

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	214
UNIPROTKB|F1P800	608	GALNT11 "Uncharacterized prote	0.915	0.322	0.505	6e-48
UNIPROTKB|E1BDW8	606	GALNT11 "Uncharacterized prote	0.775	0.273	0.544	3e-46
UNIPROTKB|B7Z5G5	527	GALNT11 "cDNA FLJ58212, highly	0.775	0.314	0.550	3e-46
UNIPROTKB|Q8NCW6	608	GALNT11 "Polypeptide N-acetylg	0.775	0.273	0.550	3e-46
FB|FBgn0001970	632	Pgant35A "Polypeptide N-acetyl	0.775	0.262	0.551	1e-45
UNIPROTKB|E1BYU3	608	GALNT11 "Uncharacterized prote	0.775	0.273	0.580	1e-45
MGI|MGI:2444392	608	Galnt11 "UDP-N-acetyl-alpha-D-	0.887	0.312	0.494	1e-45
RGD|735097	608	Galnt11 "UDP-N-acetyl-alpha-D-	0.775	0.273	0.544	1e-45
UNIPROTKB|F1SSN4	608	GALNT11 "Uncharacterized prote	0.775	0.273	0.538	2.1e-45
ZFIN|ZDB-GENE-060929-998	590	galnt11 "UDP-N-acetyl-alpha-D-	0.803	0.291	0.526	5.6e-45

UNIPROTKB|F1P800 GALNT11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 100/198 (50%), Positives = 132/198 (66%)

Query:     5 CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
             C +++FP+ LP+ SV+ICFYNE  + L R+V ++L RT   LLHEIILV+D S++  +L 
Sbjct:   141 CRDKSFPADLPAASVVICFYNEALSALLRTVHSVLDRTPAQLLHEIILVDDDSDF-DDLK 199

Query:    65 GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
             GE+E +V+    G++ + R  KREGLIR RM GA +ATG+VLVFLDSH EVN  WL+PLL
Sbjct:   200 GELEEYVQKYLPGKIKVIRNIKREGLIRGRMIGAAHATGEVLVFLDSHCEVNVMWLQPLL 259

Query:   125 VPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKVKTSSNPSYLPL 184
               I E   TV  P+IDII+ADT  Y+SS +VRGGFNWGLHFKW+ +P +     P     
Sbjct:   260 AAIQEDQQTVVCPVIDIISADTLAYSSSPVVRGGFNWGLHFKWDLVP-LSELGGPEGATA 318

Query:   185 QYTSSALVRGGFNWGLHF 202
                S  +  G F    H+
Sbjct:   319 PIKSPTMAGGLFAMNRHY 336

GO:0006486 "protein glycosylation" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|E1BDW8 GALNT11 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 91/167 (54%), Positives = 123/167 (73%)

Query:     5 CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
             C ++++P+ LP  S++ICFYNE  + L R+V ++L RT   LLHEIILV+D S++  +L 
Sbjct:   139 CKDKSYPADLPVASIVICFYNEALSALLRTVHSVLDRTPARLLHEIILVDDDSDF-DDLK 197

Query:    65 GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
             GE++ +++    G++ + R  KREGLIR RM GA +ATG+VLVFLDSH EVN  WL+PLL
Sbjct:   198 GELDEYIQKYLPGKIKVIRNPKREGLIRGRMIGAAHATGEVLVFLDSHCEVNVLWLQPLL 257

Query:   125 VPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLP 171
               I E   TV  P+IDII+ADT  Y+SS +VRGGFNWGLHFKW+ +P
Sbjct:   258 AAIREDRRTVVCPVIDIISADTLAYSSSPVVRGGFNWGLHFKWDLVP 304

GO:0006486 "protein glycosylation" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|B7Z5G5 GALNT11 "cDNA FLJ58212, highly similar to PolypeptideN-acetylgalactosaminyltransferase 11 (EC 2.4.1.41)" [Homo sapiens (taxid:9606)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 92/167 (55%), Positives = 123/167 (73%)

Query:     5 CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
             C  + +P  LP+ SV+ICFYNE  + L R+V +++ RT   LLHEIILV+D S++  +L 
Sbjct:    60 CKEKFYPPDLPAASVVICFYNEAFSALLRTVHSVIDRTPAHLLHEIILVDDDSDF-DDLK 118

Query:    65 GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
             GE++ +V+    G++ + R +KREGLIR RM GA +ATG+VLVFLDSH EVN  WL+PLL
Sbjct:   119 GELDEYVQKYLPGKIKVIRNTKREGLIRGRMIGAAHATGEVLVFLDSHCEVNVMWLQPLL 178

Query:   125 VPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLP 171
               I E  +TV  P+IDII+ADT  Y+SS +VRGGFNWGLHFKW+ +P
Sbjct:   179 AAIREDRHTVVCPVIDIISADTLAYSSSPVVRGGFNWGLHFKWDLVP 225

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=IEA

UNIPROTKB|Q8NCW6 GALNT11 "Polypeptide N-acetylgalactosaminyltransferase 11" [Homo sapiens (taxid:9606)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 92/167 (55%), Positives = 123/167 (73%)

Query:     5 CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
             C  + +P  LP+ SV+ICFYNE  + L R+V +++ RT   LLHEIILV+D S++  +L 
Sbjct:   141 CKEKFYPPDLPAASVVICFYNEAFSALLRTVHSVIDRTPAHLLHEIILVDDDSDF-DDLK 199

Query:    65 GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
             GE++ +V+    G++ + R +KREGLIR RM GA +ATG+VLVFLDSH EVN  WL+PLL
Sbjct:   200 GELDEYVQKYLPGKIKVIRNTKREGLIRGRMIGAAHATGEVLVFLDSHCEVNVMWLQPLL 259

Query:   125 VPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLP 171
               I E  +TV  P+IDII+ADT  Y+SS +VRGGFNWGLHFKW+ +P
Sbjct:   260 AAIREDRHTVVCPVIDIISADTLAYSSSPVVRGGFNWGLHFKWDLVP 306

GO:0016021 "integral to membrane" evidence=IEA

GO:0004653 "polypeptide N-acetylgalactosaminyltransferase activity" evidence=IEA

GO:0000139 "Golgi membrane" evidence=TAS

GO:0016266 "O-glycan processing" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

FB|FBgn0001970 Pgant35A "Polypeptide N-acetylgalactosaminyltransferase 35A" [Drosophila melanogaster (taxid:7227)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 96/174 (55%), Positives = 121/174 (69%)

Query:     4 ICANQ--TFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPS 61
             +C  Q  T    LP  S+++CFYNEH  TL RS++T+L RT   LL EIILV+D S+ P 
Sbjct:   135 VCDRQETTEAENLPQASIVMCFYNEHKMTLMRSIKTVLERTPSYLLREIILVDDHSDLPE 194

Query:    62 ---NLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTH 118
                +LHG++   +K  N   +   +  +REGLIR+R+ GA+ A G VLVFLDSHIEVN  
Sbjct:   195 LEFHLHGDLRARLKYDN---LRYIKNEQREGLIRSRVIGAREAVGDVLVFLDSHIEVNQQ 251

Query:   119 WLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPK 172
             WLEPLL  I     T+ VP+ID+INADTF+YT S LVRGGFNWGLHF+WENLP+
Sbjct:   252 WLEPLLRLIKSENATLAVPVIDLINADTFEYTPSPLVRGGFNWGLHFRWENLPE 305

GO:0004653 "polypeptide N-acetylgalactosaminyltransferase activity" evidence=ISS;IDA

GO:0009312 "oligosaccharide biosynthetic process" evidence=IDA

GO:0005795 "Golgi stack" evidence=NAS

GO:0007424 "open tracheal system development" evidence=IMP

UNIPROTKB|E1BYU3 GALNT11 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 97/167 (58%), Positives = 117/167 (70%)

Query:     5 CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
             C  +++PS LP  SVIICFYNE  + L R+V ++L RT   LLHEIILV+D SE   +L 
Sbjct:   141 CREKSYPSDLPFASVIICFYNEALSALLRTVHSVLDRTPAHLLHEIILVDDNSEL-DDLK 199

Query:    65 GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
              ++  +VK        L R  KREGLIR RM GA +ATGKVLVFLDSH EVN  WL+PLL
Sbjct:   200 KDLVEYVKTRLPKTTKLVRNEKREGLIRGRMIGASHATGKVLVFLDSHCEVNEMWLQPLL 259

Query:   125 VPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLP 171
              PI E   TV  P+IDII+ADT  Y+SS +VRGGFNWGLHFKW+ +P
Sbjct:   260 TPIKEDRRTVVCPVIDIISADTLTYSSSPVVRGGFNWGLHFKWDLVP 306

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=IEA

MGI|MGI:2444392 Galnt11 "UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11" [Mus musculus (taxid:10090)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 95/192 (49%), Positives = 129/192 (67%)

Query:     5 CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
             C  +++P+ LP+ S++ICFYNE  + L R+V +++ RT   LLHEIILV+D S++  +L 
Sbjct:   141 CRRKSYPTDLPTASIVICFYNEAFSALLRTVHSVVDRTPAHLLHEIILVDDSSDF-DDLK 199

Query:    65 GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
             GE++ +++     +V + R  KREGLIR RM GA +ATG+VLVFLDSH EVN  WL+PLL
Sbjct:   200 GELDEYIQRYLPAKVKVIRNMKREGLIRGRMIGAAHATGEVLVFLDSHCEVNVMWLQPLL 259

Query:   125 VPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKVKTSSNPSYLPL 184
               I E  +TV  P+IDII+ADT  Y+SS +VRGGFNWGLHFKW+ +P V     P     
Sbjct:   260 AIILEDPHTVVCPVIDIISADTLAYSSSPVVRGGFNWGLHFKWDLVP-VSELGGPDGATA 318

Query:   185 QYTSSALVRGGF 196
                S  +  G F
Sbjct:   319 PIRSPTMAGGLF 330

GO:0003674 "molecular_function" evidence=ND

GO:0004653 "polypeptide N-acetylgalactosaminyltransferase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

RGD|735097 Galnt11 "UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)" [Rattus norvegicus (taxid:10116)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 91/167 (54%), Positives = 123/167 (73%)

Query:     5 CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
             C  +++P+ LP+ SV+ICFYNE  + L R+V +++ RT   LLHEIILV+D S++  +L 
Sbjct:   141 CRGKSYPTDLPTASVVICFYNEAFSALLRTVHSVVDRTPAHLLHEIILVDDSSDF-DDLK 199

Query:    65 GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
             GE++ +++     +V + R  KREGLIR RM GA +ATG+VLVFLDSH EVN  WL+PLL
Sbjct:   200 GELDEYIQRYLPAKVKVIRNMKREGLIRGRMIGAAHATGEVLVFLDSHCEVNVMWLQPLL 259

Query:   125 VPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLP 171
               I E  +TV  P+IDII+ADT  Y+SS +VRGGFNWGLHFKW+ +P
Sbjct:   260 AIILEDPHTVVCPVIDIISADTLAYSSSPVVRGGFNWGLHFKWDLVP 306

GO:0000139 "Golgi membrane" evidence=IEA

GO:0004653 "polypeptide N-acetylgalactosaminyltransferase activity" evidence=IEA

GO:0006486 "protein glycosylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1SSN4 GALNT11 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 90/167 (53%), Positives = 124/167 (74%)

Query:     5 CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
             C ++++ + LP  SVIICFYNE  + L R+V ++L RT   LLHEIILV+D S++  +L 
Sbjct:   141 CKDKSYRTDLPVASVIICFYNEALSALLRTVHSVLDRTPARLLHEIILVDDDSDF-DDLK 199

Query:    65 GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
             GE++ +++    G++ + R +KREGLIR RM GA +ATG+VLVFLDSH EVN  WL+PLL
Sbjct:   200 GELDEYIQKYLTGKIKVIRNTKREGLIRGRMIGAAHATGEVLVFLDSHCEVNVLWLQPLL 259

Query:   125 VPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLP 171
               I E  +TV  P+IDII+ADT  Y++S +VRGGFNWGLHF+W+ +P
Sbjct:   260 AAIREDRHTVVCPVIDIISADTLAYSASPVVRGGFNWGLHFRWDLVP 306

GO:0006486 "protein glycosylation" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

ZFIN|ZDB-GENE-060929-998 galnt11 "UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)" [Danio rerio (taxid:7955)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 91/173 (52%), Positives = 123/173 (71%)

Query:     5 CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
             C ++ +  +LP+ S++ICF+NE  + L R+V ++L RT   LLHEIILV+D SE   +L 
Sbjct:   127 CRDRAYSVSLPTASIVICFFNEAFSALLRTVHSVLDRTPNYLLHEIILVDDHSEL-DDLK 185

Query:    65 GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
              +++++V+     +V + R  KREGLIR RM GA +ATG+VLVFLDSH EVN  WL+PLL
Sbjct:   186 EDLDSYVQQHLQKKVKVVRNEKREGLIRGRMIGASHATGEVLVFLDSHCEVNEAWLQPLL 245

Query:   125 VPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKVKTSS 177
              PI E   TV  P+IDII+ADT  YT S +VRGGFNWGLHFKW+ +P  + +S
Sbjct:   246 TPIKENRKTVVCPVIDIISADTLVYTPSPIVRGGFNWGLHFKWDPVPMSELNS 298

GO:0016740 "transferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8NCW6	GLT11_HUMAN	2, ., 4, ., 1, ., 4, 1	0.5508	0.7757	0.2730	yes	N/A
Q8MVS5	GLT35_DROME	2, ., 4, ., 1, ., 4, 1	0.5517	0.7757	0.2626	yes	N/A
Q6P6V1	GLT11_RAT	2, ., 4, ., 1, ., 4, 1	0.5449	0.7757	0.2730	yes	N/A
Q921L8	GLT11_MOUSE	2, ., 4, ., 1, ., 4, 1	0.5389	0.7757	0.2730	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.4.1.80	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	214
cd02510	299	cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the fo	3e-71
pfam00535	168	pfam00535, Glycos_transf_2, Glycosyl transferase f	6e-25
cd00761	156	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase	3e-12
COG0463	291	COG0463, WcaA, Glycosyltransferases involved in ce	3e-10
TIGR03965	467	TIGR03965, mycofact_glyco, mycofactocin system gly	3e-10
COG1215	439	COG1215, COG1215, Glycosyltransferases, probably i	1e-09
COG1216	305	COG1216, COG1216, Predicted glycosyltransferases [	7e-06
cd04179	185	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_l	4e-05
cd06434	235	cd06434, GT2_HAS, Hyaluronan synthases catalyze po	2e-04
cd04192	229	cd04192, GT_2_like_e, Subfamily of Glycosyltransfe	2e-04
cd04186	166	cd04186, GT_2_like_c, Subfamily of Glycosyltransfe	5e-04
cd04188	211	cd04188, DPG_synthase, DPG_synthase is involved in	8e-04
cd04187	181	cd04187, DPM1_like_bac, Bacterial DPM1_like enzyme	0.003

>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

 Score =  218 bits (558), Expect = 3e-71
 Identities = 93/179 (51%), Positives = 117/179 (65%), Gaps = 6/179 (3%)

Query: 18  SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNG 77
           SVII F+NE  +TL R+V ++++RT   LL EIILV+DFS+ P  L   +E + K     
Sbjct: 1   SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKP-ELKLLLEEYYKKYL-P 58

Query: 78  RVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP 137
           +V + R  KREGLIRAR+ GA+ ATG VLVFLDSH EVN  WLEPLL  IAE   TV  P
Sbjct: 59  KVKVLRLKKREGLIRARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCP 118

Query: 138 IIDIINADTFQY-TSSALVRGGFNWGLHFKWENLPKVKTSSNPSYLPLQYTSSALVRGG 195
           IID+I+ADTF+Y  SS   RGGF+W LHFKW  LP+ +        P++   S  + GG
Sbjct: 119 IIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRESPTAPIR---SPTMAGG 174

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins. Length = 299

>gnl|CDD|215980 pfam00535, Glycos_transf_2, Glycosyl transferase family 2

 Score = 95.6 bits (238), Expect = 6e-25
 Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 7/133 (5%)

Query: 18  SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNG 77
           SVII  YNE    L  ++++LL++T ++   EII+V+D S          E + K  N+ 
Sbjct: 1   SVIIPTYNE-EKYLEETLESLLNQTYKNF--EIIVVDDGS--TDGTVEIAEEYAK--NDP 53

Query: 78  RVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP 137
           RV + R  +  G   AR  G K ATG  + FLD+  EV   WLE L+  + +    + + 
Sbjct: 54  RVRVIRLEENLGKAAARNAGLKLATGDYIAFLDADDEVAPDWLEKLVELLEKNGADIVIG 113

Query: 138 IIDIINADTFQYT 150
              +IN +T  Y 
Sbjct: 114 SRVVINGETRLYG 126

Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids. Length = 168

>gnl|CDD|132997 cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

 Score = 61.8 bits (150), Expect = 3e-12
 Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 7/114 (6%)

Query: 19  VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGR 78
           VII  YNE    L R +++LL++T  +   E+I+V+D S   +     +E + K   + R
Sbjct: 1   VIIPAYNE-EPYLERCLESLLAQTYPNF--EVIVVDDGSTDGTLE--ILEEYAK--KDPR 53

Query: 79  VHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTN 132
           V      + +GL  AR  G K A G+ ++FLD+   +   WLE L+  +     
Sbjct: 54  VIRVINEENQGLAAARNAGLKAARGEYILFLDADDLLLPDWLERLVAELLADPE 107

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities. Length = 156

>gnl|CDD|223539 COG0463, WcaA, Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 58.2 bits (139), Expect = 3e-10
 Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 12/130 (9%)

Query: 18  SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNG 77
           SV+I  YNE    L  ++++LL++T +    EII+V+D S   +        +  G  + 
Sbjct: 6   SVVIPTYNE-EEYLPEALESLLNQTYKDF--EIIVVDDGSTDGTTE--IAIEY--GAKDV 58

Query: 78  RVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP 137
           RV      +  GL  AR  G +YA G  +VFLD+          P L+P+          
Sbjct: 59  RVIRLINERNGGLGAARNAGLEYARGDYIVFLDADD-----QHPPELIPLVAAGGDGDYI 113

Query: 138 IIDIINADTF 147
                  D +
Sbjct: 114 ARLDDRDDIW 123

Length = 291

>gnl|CDD|234419 TIGR03965, mycofact_glyco, mycofactocin system glycosyltransferase

 Score = 58.2 bits (141), Expect = 3e-10
 Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 38/207 (18%)

Query: 11  PSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETF 70
             + PS +V++   N  PA L R +  LL+        E+I+V+D SE P      V T 
Sbjct: 70  LPSPPSVTVVVPVRN-RPAGLARLLAALLALDYPRDRLEVIVVDDGSEDP------VPTR 122

Query: 71  VKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAE- 129
                   V + R  +R+G   AR  GA+ A  + + F DS +     WL  LL    + 
Sbjct: 123 AARGARLPVRVIRHPRRQGPAAARNAGARAARTEFVAFTDSDVVPRPGWLRALLAHFDDP 182

Query: 130 RTNTVTVPIIDIINADT----FQYTSSALVRGGFNWGLHFKWENLPK---VKTSSNPSYL 182
               V   ++ +   DT    ++   S+L  G             P+   V+     SY+
Sbjct: 183 GVALVAPRVVALPAEDTRLARYEAVRSSLDLG-------------PEEAVVRPRGPVSYV 229

Query: 183 PLQYTSSALVR-------GGFNWGLHF 202
           P   +++ LVR       GGF+  L  
Sbjct: 230 P---SAALLVRRRALLEVGGFDERLEV 253

Members of this protein family are putative glycosyltransferases, members of pfam00535 (glycosyl transferase family 2). Members appear mostly in the Actinobacteria, where they appear to be part of a system for converting a precursor peptide (TIGR03969) into a novel redox carrier designated mycofactocin. A radical SAM enzyme, TIGR03962, is a proposed to be a key maturase for mycofactocin. Length = 467

>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 56.9 bits (137), Expect = 1e-09
 Identities = 39/154 (25%), Positives = 59/154 (38%), Gaps = 4/154 (2%)

Query: 14  LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKG 73
           LP  SVII  YNE P  L  ++++LLS+      +E+I+V+D S      +  +E     
Sbjct: 53  LPKVSVIIPAYNEEPEVLEETLESLLSQDYPR--YEVIVVDDGST--DETYEILEELGAE 108

Query: 74  LNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNT 133
                  +Y   K  G   A   G K A G V+V LD+        L  L+ P  +    
Sbjct: 109 YGPNFRVIYPEKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVG 168

Query: 134 VTVPIIDIINADTFQYTSSALVRGGFNWGLHFKW 167
             V    I N          +    +    +F+ 
Sbjct: 169 AVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRL 202

Length = 439

>gnl|CDD|224137 COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 39/173 (22%), Positives = 61/173 (35%), Gaps = 18/173 (10%)

Query: 15  PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGL 74
           P  S+II  YN     L   + +L ++T       I++V++ S             +K  
Sbjct: 3   PKISIIIVTYN-RGEDLVECLASLAAQTYPD--DVIVVVDNGS------TDGSLEALKAR 53

Query: 75  NNGRVHLYRTSKREGLIRARMFGAKYATGKV---LVFLDSHIEVNTHWLEPLLVPIAE-R 130
               V L    +  G       G KYA  K    ++ L+    V    LE LL    E  
Sbjct: 54  FFPNVRLIENGENLGFAGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDP 113

Query: 131 TNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKVKTSSNPSYLP 183
              V  P+I       +  +     RGG + GL   W   P ++ + + S   
Sbjct: 114 AAGVVGPLIRN-----YDESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYL 161

Length = 305

>gnl|CDD|133022 cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 9/95 (9%)

Query: 19  VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGL--NN 76
           V+I  YNE    +   V+ LL+   +   +EII+V+D S   +    E+    + L    
Sbjct: 1   VVIPAYNE-EENIPELVERLLAVLEEGYDYEIIVVDDGSTDGT---AEI---ARELAARV 53

Query: 77  GRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDS 111
            RV + R S+  G   A   G K A G ++V +D+
Sbjct: 54  PRVRVIRLSRNFGKGAAVRAGFKAARGDIVVTMDA 88

DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily. Length = 185

>gnl|CDD|133056 cd06434, GT2_HAS, Hyaluronan synthases catalyze polymerization of hyaluronan

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 18/102 (17%)

Query: 16  STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFS--EYPSNLHGEVETFVKG 73
             +VII  Y+E P      ++++L +       EII+V D     Y S L   V      
Sbjct: 1   DVTVIIPVYDEDPDVFRECLRSILRQKP----LEIIVVTDGDDEPYLSILSQTV------ 50

Query: 74  LNNGRVHLY--RTSKREGLIRARMFGAKYATGKVLVFLDSHI 113
              G   +      KR  L      G ++ T  ++V LDS  
Sbjct: 51  KYGGIFVITVPHPGKRRALAE----GIRHVTTDIVVLLDSDT 88

Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate. Length = 235

>gnl|CDD|133035 cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2 of unknown function

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 19  VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFS-----EYPSNLHGEVETFVKG 73
           V+I   NE    L R +Q+L +        E+ILV+D S     +       +    +K 
Sbjct: 1   VVIAARNE-AENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKI 59

Query: 74  LNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNT 133
           LNN RV +  + K+  L  A     K A G  +V  D+   V ++WL   +  I +    
Sbjct: 60  LNNSRVSI--SGKKNALTTA----IKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIG 113

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 229

>gnl|CDD|133029 cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 19  VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGR 78
           +II  YN     L   + +LL++T      E+I+V++ S   S     VE   +      
Sbjct: 1   IIIVNYN-SLEYLKACLDSLLAQTYPD--FEVIVVDNASTDGS-----VELLRE--LFPE 50

Query: 79  VHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAER 130
           V L R  +  G       G + A G  ++ L+    V    L  LL    + 
Sbjct: 51  VRLIRNGENLGFGAGNNQGIREAKGDYVLLLNPDTVVEPGALLELLDAAEQD 102

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 166

>gnl|CDD|133031 cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation

 Score = 38.7 bits (91), Expect = 8e-04
 Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 10/96 (10%)

Query: 19  VIICFYNEH---PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEV-ETFVKGL 74
           V+I  YNE    P TL  +V+ L  R   S  +EII+V+D S    +   EV     +  
Sbjct: 1   VVIPAYNEEKRLPPTLEEAVEYLEERPSFS--YEIIVVDDGS---KDGTAEVARKLARK- 54

Query: 75  NNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLD 110
           N   + +    K  G   A   G   A G  ++F D
Sbjct: 55  NPALIRVLTLPKNRGKGGAVRAGMLAARGDYILFAD 90

UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. Length = 211

>gnl|CDD|133030 cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1

 Score = 37.1 bits (87), Expect = 0.003
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 16/99 (16%)

Query: 19  VIICFYNEHPA--TLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETF--VKGL 74
           +++  YNE      LY  ++ +L   G    +EII V+D S           T   ++ L
Sbjct: 1   IVVPVYNEEENLPELYERLKAVLESLGYD--YEIIFVDDGS--TDR------TLEILREL 50

Query: 75  --NNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDS 111
              + RV + R S+  G   A + G  +A G  ++ +D+
Sbjct: 51  AARDPRVKVIRLSRNFGQQAALLAGLDHARGDAVITMDA 89

A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily. Length = 181

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	214
KOG3738|consensus	559		99.97
cd02510	299	pp-GalNAc-T pp-GalNAc-T initiates the formation of	99.97
KOG3736|consensus	578		99.96
KOG3737|consensus	603		99.95
PRK10073	328	putative glycosyl transferase; Provisional	99.93
PRK10018	279	putative glycosyl transferase; Provisional	99.92
cd04184	202	GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot	99.91
TIGR03469	384	HonB hopene-associated glycosyltransferase HpnB. T	99.91
PF00535	169	Glycos_transf_2: Glycosyl transferase family 2; In	99.91
cd02520	196	Glucosylceramide_synthase Glucosylceramide synthas	99.9
cd06427	241	CESA_like_2 CESA_like_2 is a member of the cellulo	99.9
PLN02726	243	dolichyl-phosphate beta-D-mannosyltransferase	99.9
TIGR03111	439	glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0	99.9
cd04195	201	GT2_AmsE_like GT2_AmsE_like is involved in exopoly	99.9
cd06437	232	CESA_CaSu_A2 Cellulose synthase catalytic subunit	99.89
cd06439	251	CESA_like_1 CESA_like_1 is a member of the cellulo	99.89
cd04196	214	GT_2_like_d Subfamily of Glycosyltransferase Famil	99.89
cd06913	219	beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran	99.89
PRK10063	248	putative glycosyl transferase; Provisional	99.88
PRK11204	420	N-glycosyltransferase; Provisional	99.88
cd06421	234	CESA_CelA_like CESA_CelA_like are involved in the	99.88
cd06433	202	GT_2_WfgS_like WfgS and WfeV are involved in O-ant	99.88
PRK14583	444	hmsR N-glycosyltransferase; Provisional	99.88
TIGR03472	373	HpnI hopanoid biosynthesis associated glycosyl tra	99.88
cd06442	224	DPM1_like DPM1_like represents putative enzymes si	99.87
cd02525	249	Succinoglycan_BP_ExoA ExoA is involved in the bios	99.87
cd04187	181	DPM1_like_bac Bacterial DPM1_like enzymes are rela	99.87
PRK10714	325	undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi	99.87
cd06423	180	CESA_like CESA_like is the cellulose synthase supe	99.87
cd04179	185	DPM_DPG-synthase_like DPM_DPG-synthase_like is a m	99.86
cd04185	202	GT_2_like_b Subfamily of Glycosyltransferase Famil	99.86
PTZ00260	333	dolichyl-phosphate beta-glucosyltransferase; Provi	99.86
cd04192	229	GT_2_like_e Subfamily of Glycosyltransferase Famil	99.86
cd04188	211	DPG_synthase DPG_synthase is involved in protein N	99.86
KOG2978|consensus	238		99.85
cd02522	221	GT_2_like_a GT_2_like_a represents a glycosyltrans	99.85
cd06435	236	CESA_NdvC_like NdvC_like proteins in this family a	99.85
COG1216	305	Predicted glycosyltransferases [General function p	99.84
PF13641	228	Glyco_tranf_2_3: Glycosyltransferase like family 2	99.84
cd06420	182	GT2_Chondriotin_Pol_N N-terminal domain of Chondro	99.84
cd06434	235	GT2_HAS Hyaluronan synthases catalyze polymerizati	99.83
cd06438	183	EpsO_like EpsO protein participates in the methano	99.83
PRK13915	306	putative glucosyl-3-phosphoglycerate synthase; Pro	99.83
cd04186	166	GT_2_like_c Subfamily of Glycosyltransferase Famil	99.83
cd02511	229	Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4	99.82
cd06436	191	GlcNAc-1-P_transferase N-acetyl-glucosamine transf	99.82
cd02526	237	GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr	99.82
COG0463	291	WcaA Glycosyltransferases involved in cell wall bi	99.8
PRK11498	852	bcsA cellulose synthase catalytic subunit; Provisi	99.8
TIGR03030	713	CelA cellulose synthase catalytic subunit (UDP-for	99.8
PF10111	281	Glyco_tranf_2_2: Glycosyltransferase like family 2	99.79
COG1215	439	Glycosyltransferases, probably involved in cell wa	99.78
TIGR01556	281	rhamnosyltran L-rhamnosyltransferase. Rhamnolipids	99.77
cd04190	244	Chitin_synth_C C-terminal domain of Chitin Synthas	99.67
cd04191	254	Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon	99.66
PRK14716	504	bacteriophage N4 adsorption protein B; Provisional	99.66
cd00761	156	Glyco_tranf_GTA_type Glycosyltransferase family A	99.6
KOG2977|consensus	323		99.58
PRK11234	727	nfrB bacteriophage N4 adsorption protein B; Provis	99.58
PRK05454	691	glucosyltransferase MdoH; Provisional	99.52
PRK15489	703	nfrB bacteriophage N4 adsorption protein B; Provis	99.43
cd02514	334	GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an es	99.32
KOG2547|consensus	431		98.94
PF13712	217	Glyco_tranf_2_5: Glycosyltransferase like family;	98.79
PF13704	97	Glyco_tranf_2_4: Glycosyl transferase family 2	98.32
PF03452	269	Anp1: Anp1; InterPro: IPR005109 The members of thi	98.22
PF03071	434	GNT-I: GNT-I family; InterPro: IPR004139 The biosy	98.06
COG4092	346	Predicted glycosyltransferase involved in capsule	97.92
KOG3588|consensus	494		97.9
PF03142	527	Chitin_synth_2: Chitin synthase; InterPro: IPR0048	97.8
PF13506	175	Glyco_transf_21: Glycosyl transferase family 21	97.71
PF09488	381	Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthas	97.56
PF06306	347	CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (	97.4
COG2943	736	MdoH Membrane glycosyltransferase [Cell envelope b	97.38
PRK14503	393	mannosyl-3-phosphoglycerate synthase; Provisional	97.35
TIGR02460	381	osmo_MPGsynth mannosyl-3-phosphoglycerate synthase	97.35
PF05679	499	CHGN: Chondroitin N-acetylgalactosaminyltransferas	97.34
PF11316	234	Rhamno_transf: Putative rhamnosyl transferase ; In	97.3
cd00218	223	GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I)	97.1
PLN02458	346	transferase, transferring glycosyl groups	96.86
PF13733	136	Glyco_transf_7N: N-terminal region of glycosyl tra	96.83
PF09258	247	Glyco_transf_64: Glycosyl transferase family 64 do	96.8
PRK14502	694	bifunctional mannosyl-3-phosphoglycerate synthase/	96.71
PF03214	348	RGP: Reversibly glycosylated polypeptide; InterPro	96.61
cd04182	186	GT_2_like_f GT_2_like_f is a subfamily of the glyc	96.55
KOG1476|consensus	330		96.47
PLN02893	734	Cellulose synthase-like protein	96.38
PRK00317	193	mobA molybdopterin-guanine dinucleotide biosynthes	96.38
PF12804	160	NTP_transf_3: MobA-like NTP transferase domain; PD	96.25
TIGR03310	188	matur_ygfJ molybdenum hydroxylase accessory protei	96.2
cd00899	219	b4GalT Beta-4-Galactosyltransferase is involved in	96.15
PF04666	297	Glyco_transf_54: N-Acetylglucosaminyltransferase-I	96.13
KOG1413|consensus	411		96.06
PF13632	193	Glyco_trans_2_3: Glycosyl transferase family group	96.04
TIGR03202	190	pucB xanthine dehydrogenase accessory protein pucB	95.98
PF11735	241	CAP59_mtransfer: Cryptococcal mannosyltransferase	95.94
KOG3916|consensus	372		95.78
PF11397	343	GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IP	95.72
cd02540	229	GT2_GlmU_N_bac N-terminal domain of bacterial GlmU	95.7
cd02503	181	MobA MobA catalyzes the formation of molybdopterin	95.43
COG1209	286	RfbA dTDP-glucose pyrophosphorylase [Cell envelope	95.41
PLN02917	293	CMP-KDO synthetase	95.4
PRK00155	227	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	95.3
cd04181	217	NTP_transferase NTP_transferases catalyze the tran	95.18
PF01697	285	Glyco_transf_92: Glycosyltransferase family 92; In	94.77
cd06915	223	NTP_transferase_WcbM_like WcbM_like is a subfamily	94.69
COG1213	239	Predicted sugar nucleotidyltransferases [Cell enve	94.65
PRK13368	238	3-deoxy-manno-octulosonate cytidylyltransferase; P	94.6
PF00483	248	NTP_transferase: Nucleotidyl transferase This Pros	94.54
cd06422	221	NTP_transferase_like_1 NTP_transferase_like_1 is a	94.49
cd02518	233	GT2_SpsF SpsF is a glycosyltrnasferase implicated	94.47
PRK05450	245	3-deoxy-manno-octulosonate cytidylyltransferase; P	94.45
cd06431	280	GT8_LARGE_C LARGE catalytic domain has closest hom	94.32
cd00505	246	Glyco_transf_8 Members of glycosyltransferase fami	94.31
cd02513	223	CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-	94.28
TIGR02665	186	molyb_mobA molybdopterin-guanine dinucleotide bios	94.21
cd06425	233	M1P_guanylylT_B_like_N N-terminal domain of the M1	94.18
cd06428	257	M1P_guanylylT_A_like_N N-terminal domain of M1P_gu	94.15
PLN03180	346	reversibly glycosylated polypeptide; Provisional	94.11
PRK09382	378	ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp	94.11
PRK15480	292	glucose-1-phosphate thymidylyltransferase RfbA; Pr	94.08
TIGR03552	195	F420_cofC 2-phospho-L-lactate guanylyltransferase	94.04
cd02516	218	CDP-ME_synthetase CDP-ME synthetase is involved in	93.95
PRK14353	446	glmU bifunctional N-acetylglucosamine-1-phosphate	93.9
PRK13385	230	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	93.77
PRK02726	200	molybdopterin-guanine dinucleotide biosynthesis pr	93.58
cd04189	236	G1P_TT_long G1P_TT_long represents the long form o	93.36
PF13896	317	Glyco_transf_49: Glycosyl-transferase for dystrogl	93.13
cd02509	274	GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf	93.02
PRK14355	459	glmU bifunctional N-acetylglucosamine-1-phosphate	92.81
TIGR00453	217	ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl	92.73
COG2068	199	Uncharacterized MobA-related protein [General func	92.23
PRK14360	450	glmU bifunctional N-acetylglucosamine-1-phosphate	92.22
cd04183	231	GT2_BcE_like GT2_BcbE_like is likely involved in t	92.22
PF03360	207	Glyco_transf_43: Glycosyltransferase family 43; In	92.14
PLN02189	1040	cellulose synthase	91.99
TIGR01207	286	rmlA glucose-1-phosphate thymidylyltransferase, sh	91.75
TIGR03584	222	PseF pseudaminic acid CMP-transferase. The sequenc	91.74
COG1211	230	IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt	91.68
cd04194	248	GT8_A4GalT_like A4GalT_like proteins catalyze the	91.62
COG1208	358	GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas	91.5
PF01501	250	Glyco_transf_8: Glycosyl transferase family 8; Int	91.19
PRK14352	482	glmU bifunctional N-acetylglucosamine-1-phosphate	91.11
cd02517	239	CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th	91.02
TIGR01173	451	glmU UDP-N-acetylglucosamine diphosphorylase/gluco	91.02
cd02508	200	ADP_Glucose_PP ADP-glucose pyrophosphorylase is in	90.92
cd06426	220	NTP_transferase_like_2 NTP_trnasferase_like_2 is a	90.56
cd02538	240	G1P_TT_short G1P_TT_short is the short form of glu	90.54
PRK14358	481	glmU bifunctional N-acetylglucosamine-1-phosphate	90.34
cd02524	253	G1P_cytidylyltransferase G1P_cytidylyltransferase	90.25
PRK14357	448	glmU bifunctional N-acetylglucosamine-1-phosphate	90.19
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	90.17
PRK14356	456	glmU bifunctional N-acetylglucosamine-1-phosphate	89.46
TIGR00454	183	conserved hypothetical protein TIGR00454. At this	89.34
KOG2571|consensus	862		89.27
PF09837	122	DUF2064: Uncharacterized protein conserved in bact	89.09
PLN02190	756	cellulose synthase-like protein	89.01
PF05060	356	MGAT2: N-acetylglucosaminyltransferase II (MGAT2);	88.85
PRK15171	334	lipopolysaccharide 1,3-galactosyltransferase; Prov	88.83
PLN02638	1079	cellulose synthase A (UDP-forming), catalytic subu	88.6
COG0746	192	MobA Molybdopterin-guanine dinucleotide biosynthes	88.55
KOG1022|consensus	691		88.49
PF02348	217	CTP_transf_3: Cytidylyltransferase; InterPro: IPR0	88.48
TIGR01105	297	galF UTP-glucose-1-phosphate uridylyltransferase,	88.48
cd02523	229	PC_cytidylyltransferase Phosphocholine cytidylyltr	88.45
PRK14354	458	glmU bifunctional N-acetylglucosamine-1-phosphate	87.9
cd02541	267	UGPase_prokaryotic Prokaryotic UGPase catalyses th	87.9
cd04198	214	eIF-2B_gamma_N The N-terminal domain of gamma subu	87.48
PLN02728	252	2-C-methyl-D-erythritol 4-phosphate cytidylyltrans	87.25
TIGR00466	238	kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe	87.14
PRK00576	178	molybdopterin-guanine dinucleotide biosynthesis pr	87.13
TIGR01099	260	galU UTP-glucose-1-phosphate uridylyltransferase.	86.68
PRK09451	456	glmU bifunctional N-acetylglucosamine-1-phosphate	86.07
TIGR02623	254	G1P_cyt_trans glucose-1-phosphate cytidylyltransfe	85.79
COG1207	460	GlmU N-acetylglucosamine-1-phosphate uridyltransfe	85.73
cd06432	248	GT8_HUGT1_C_like The C-terminal domain of HUGT1-li	84.97
PLN02195	977	cellulose synthase A	83.84
TIGR01208	353	rmlA_long glucose-1-phosphate thymidylylransferase	83.29
PF02485	244	Branch: Core-2/I-Branching enzyme; InterPro: IPR00	82.77
COG1210	291	GalU UDP-glucose pyrophosphorylase [Cell envelope	82.7

>KOG3738|consensus

Probab=99.97  E-value=1.4e-31  Score=217.81  Aligned_cols=167  Identities=49%  Similarity=0.813  Sum_probs=153.2

Q ss_pred             ccCCcCCCCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc
Q psy1766           5 CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT   84 (214)
Q Consensus         5 ~~~~~~~~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~   84 (214)
                      |....|...||..||||..+||+...|.+++.|++++++.+...|||+|||+|.| .+....+.++      ++++++++
T Consensus       114 C~~~~y~~dlp~TsviITfHNEARS~LLRTv~SvlnrsP~~li~EiILVDD~S~D-ped~~~L~ri------~kvr~LRN  186 (559)
T KOG3738|consen  114 CRDVDYKVDLPPTSVIITFHNEARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQD-PEDGKLLKRI------PKVRVLRN  186 (559)
T ss_pred             cccceeecCCCCceEEEEeccHHHHHHHHHHHHHHcCChHHhhheeEEecCCCCC-hHHHHHHhhh------heeeeecc
Confidence            8888999999999999999999989999999999999999988999999999996 3344444443      79999999


Q ss_pred             CCCcchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeeecCCcceeec-CCceeeeeEecc
Q psy1766          85 SKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTS-SALVRGGFNWGL  163 (214)
Q Consensus        85 ~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~~-~~~~~g~~~~~~  163 (214)
                      +++.|.-..|+.|+..|++.++.|||+.+.+..+||+.|++.+.++...||+|++|+|+-++|.|.+ +...+|||+|++
T Consensus       187 ~~ReGLirSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvaed~trvVsPiiDvIn~dnf~Y~~asadLrGGFDWsL  266 (559)
T KOG3738|consen  187 NEREGLIRSRVRGADVAQATVLTFLDSHCEVNEGWLEPLLERVAEDTTRVVSPIIDVINLDNFSYVGASADLRGGFDWSL  266 (559)
T ss_pred             cchhhhhhhhccccccccceEEEEEecceeecchhhHHHHHHHhhcccceeecccccccccccccccchhhhcCCcceEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999985 567899999999


Q ss_pred             cceeecCCccccCCC
Q psy1766         164 HFKWENLPKVKTSSN  178 (214)
Q Consensus       164 ~~~~~~~~~~~~~~~  178 (214)
                      +|+|..++.+....+
T Consensus       267 hF~We~~~~eqr~sr  281 (559)
T KOG3738|consen  267 HFKWEQMQLEQRESR  281 (559)
T ss_pred             EEEehhcCHHHHhhc
Confidence            999999998776655

>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

Probab=99.97  E-value=2.7e-29  Score=206.62  Aligned_cols=184  Identities=48%  Similarity=0.723  Sum_probs=147.8

Q ss_pred             EEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhh
Q psy1766          18 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFG   97 (214)
Q Consensus        18 SVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g   97 (214)
                      |||||+||+..+.|.+||+|+++|+++...+|||||||||+  |.+.+.+.+.......+++++++.+.|.|.+.|+|.|
T Consensus         1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~--d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g   78 (299)
T cd02510           1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSD--KPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAG   78 (299)
T ss_pred             CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCC--chHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHH
Confidence            79999999977899999999999998764469999999999  8888887663222214689999999999999999999


Q ss_pred             hhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeeecCCcceeecCCc-eeeeeEecccceeecCCcccc-
Q psy1766          98 AKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSAL-VRGGFNWGLHFKWENLPKVKT-  175 (214)
Q Consensus        98 ~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~-  175 (214)
                      +++|+|+||+|||+|+.+.++||+.+++.+.+++..+++|.+..++..++.+.+... ..+++.|.+.+.|...+.... 
T Consensus        79 ~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (299)
T cd02510          79 ARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERR  158 (299)
T ss_pred             HHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhh
Confidence            999999999999999999999999999999988888999999988888888776555 678889988888865543321 


Q ss_pred             ---CCCCCCCCCCCCccch-------hccccccccccc
Q psy1766         176 ---SSNPSYLPLQYTSSAL-------VRGGFNWGLHFK  203 (214)
Q Consensus       176 ---~~~~~~~~~~~~~~~~-------~~ggf~~~~~~~  203 (214)
                         .......+...+.|++       .+||||..+..+
T Consensus       159 ~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~  196 (299)
T cd02510         159 RESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIW  196 (299)
T ss_pred             hcCCCCCccCccccceeeEEEHHHHHHhCCCCCccccc
Confidence               0011112444444443       899999988653

UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.

>KOG3736|consensus

Probab=99.96  E-value=6.2e-30  Score=220.92  Aligned_cols=178  Identities=51%  Similarity=0.844  Sum_probs=163.0

Q ss_pred             CCccccC-CcCCCCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcE
Q psy1766           1 MSIICAN-QTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRV   79 (214)
Q Consensus         1 ~~~~~~~-~~~~~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v   79 (214)
                      +...|++ ..+.+++|..||||+.+||.+..|.+++.|+++.+++...-|||+|||+|+. +.....++++.+++  ..+
T Consensus       127 r~~~C~~~~~~~~~Lp~~Svii~f~nE~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~-~~l~~~Ld~y~k~~--~~v  203 (578)
T KOG3736|consen  127 RHPECKKLKYYSDKLPTTSVIIIFHNEAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDR-DHLKDKLEEYVKRF--SKV  203 (578)
T ss_pred             hchhhhhccccccccCCCceEEEEecCCCcchhheEEeehccCChhHeEEEEEeecCcch-hhhhhhhHHHHhhh--cce
Confidence            3567877 5556889999999999999999999999999999999888999999999996 66677799998887  449


Q ss_pred             EEEEcCCCcchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeeecCCcceeec-CCceeee
Q psy1766          80 HLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTS-SALVRGG  158 (214)
Q Consensus        80 ~~i~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~~-~~~~~g~  158 (214)
                      ++++.+++.|.-.||..|+..|+||+++|+|+.+.+..+||+.+++.+..+...++||+||+|+.+++.|.. +...+|+
T Consensus       204 ~i~r~~~R~GLIrARl~GA~~A~geVL~FLDsHcE~n~gWLePLL~~I~~~r~tvv~PvID~Id~~tf~y~~~~~~~rGg  283 (578)
T KOG3736|consen  204 RILRTKKREGLIRARLLGASMATGEVLTFLDSHCEVNVGWLEPLLARIAEDRKTVVCPVIDVIDDNTFEYEKQSELMRGG  283 (578)
T ss_pred             eEEeecchhhhHHHHhhhhhhhhchheeeeecceeEecCcchHHHHHhhhcCceeecceEEeecCcCceecccCccceee
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987 7899999


Q ss_pred             eEecccceeecCCccccCCCCCC
Q psy1766         159 FNWGLHFKWENLPKVKTSSNPSY  181 (214)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~  181 (214)
                      |+|.+.|+|..+|......+...
T Consensus       284 FdW~l~f~w~~lP~~~~~~~~~~  306 (578)
T KOG3736|consen  284 FDWELTFKWERLPLPEEKRRELP  306 (578)
T ss_pred             eecceeEEeccCCccHhhcccCC
Confidence            99999999999999887775443

>KOG3737|consensus

Probab=99.95  E-value=2.2e-27  Score=193.22  Aligned_cols=175  Identities=42%  Similarity=0.754  Sum_probs=160.6

Q ss_pred             CCccccCCcCCCCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEE
Q psy1766           1 MSIICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVH   80 (214)
Q Consensus         1 ~~~~~~~~~~~~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~   80 (214)
                      |..+|+-+.|++++|..||||+.+|+.+..|.+++.|++..+++....|||+|||-|+. +...+.+.+|...+ +.-|+
T Consensus       141 R~EECkhWdYpe~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP~~~l~eivlvDDfSdK-ehLkekLDeYv~~f-nGlVk  218 (603)
T KOG3737|consen  141 RQEECKHWDYPENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSDK-EHLKEKLDEYVKLF-NGLVK  218 (603)
T ss_pred             CHhhccccCCcccCCcceEEEEEecCccHHHHHHHHHHHhcCcHHhhheEEEeccCCcc-HHHHHHHHHHHHHh-cCEEE
Confidence            34689999999999999999999999999999999999999999888899999999987 67889999999988 77899


Q ss_pred             EEEcCCCcchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeeecCCcceee---c--CCce
Q psy1766          81 LYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYT---S--SALV  155 (214)
Q Consensus        81 ~i~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~---~--~~~~  155 (214)
                      +++++++.|.-.||-.|++.|.|+.++|||+.|.+..+|+..|++.+.++..+..+|.||.||.++++|.   +  ....
T Consensus       219 V~Rne~REGLI~aRSiGA~~atGeV~ifLDAHCEVntNWlpPLlAPI~rdRtvmTVP~IDgId~n~~EyrpvyG~dn~h~  298 (603)
T KOG3737|consen  219 VFRNERREGLIQARSIGAQKATGEVLIFLDAHCEVNTNWLPPLLAPISRDRTVMTVPLIDGIDGNTYEYRPVYGGDNDHA  298 (603)
T ss_pred             EEecchhhhhhhhhccchhhccccEEEEEecceeeecccccccccccccCceEEEEeeeeeecCCceEEeeccCCcchhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999985   2  2257


Q ss_pred             eeeeEecccceeecCCccccCC
Q psy1766         156 RGGFNWGLHFKWENLPKVKTSS  177 (214)
Q Consensus       156 ~g~~~~~~~~~~~~~~~~~~~~  177 (214)
                      +|.|.|+|.++-.++++.+...
T Consensus       299 rGifeWgmLyKe~~~t~rE~r~  320 (603)
T KOG3737|consen  299 RGIFEWGMLYKEVPLTPREKRL  320 (603)
T ss_pred             cchhhhhheeccCCCCHHHHHh
Confidence            8999999999988888755433

>PRK10073 putative glycosyl transferase; Provisional

Probab=99.93  E-value=7.6e-25  Score=182.22  Aligned_cols=117  Identities=27%  Similarity=0.329  Sum_probs=106.0

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR   92 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~   92 (214)
                      .+|.||||||+||++ ++|.+||+|+++|++++  +|||||||||+  |++.++++++..+.  +++++++ .+|.|.+.
T Consensus         4 ~~p~vSVIIP~yN~~-~~L~~~l~Sl~~Qt~~~--~EIIiVdDgSt--D~t~~i~~~~~~~~--~~i~vi~-~~n~G~~~   75 (328)
T PRK10073          4 STPKLSIIIPLYNAG-KDFRAFMESLIAQTWTA--LEIIIVNDGST--DNSVEIAKHYAENY--PHVRLLH-QANAGVSV   75 (328)
T ss_pred             CCCeEEEEEeccCCH-HHHHHHHHHHHhCCCCC--eEEEEEeCCCC--ccHHHHHHHHHhhC--CCEEEEE-CCCCChHH
Confidence            468899999999999 99999999999999987  79999999999  89999999998875  7899987 46999999


Q ss_pred             HHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcC-CCEEEEe
Q psy1766          93 ARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAER-TNTVTVP  137 (214)
Q Consensus        93 a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~-~~~vv~~  137 (214)
                      |+|.|++.|+|+||+|+|+|+.+.|++++.+++.+.++ .+++++.
T Consensus        76 arN~gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~~  121 (328)
T PRK10073         76 ARNTGLAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQCN  121 (328)
T ss_pred             HHHHHHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEEc
Confidence            99999999999999999999999999999999988654 4555553

>PRK10018 putative glycosyl transferase; Provisional

Probab=99.92  E-value=2.7e-24  Score=174.85  Aligned_cols=110  Identities=21%  Similarity=0.308  Sum_probs=99.8

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR   92 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~   92 (214)
                      .+|.||||||+||++ +.|.+||+|+++|++++  +|||||||||+  +  .+.++++..++.++++++++++.|.|.+.
T Consensus         3 ~~p~VSVIip~yN~~-~~l~~~l~Svl~Qt~~~--~EiIVVDDgS~--~--~~~~~~~~~~~~~~ri~~i~~~~n~G~~~   75 (279)
T PRK10018          3 DNPLISIYMPTWNRQ-QLAIRAIKSVLRQDYSN--WEMIIVDDCST--S--WEQLQQYVTALNDPRITYIHNDINSGACA   75 (279)
T ss_pred             CCCEEEEEEEeCCCH-HHHHHHHHHHHhCCCCC--eEEEEEECCCC--C--HHHHHHHHHHcCCCCEEEEECCCCCCHHH
Confidence            468999999999999 99999999999999988  79999999998  3  45667776654457999999999999999


Q ss_pred             HHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhc
Q psy1766          93 ARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAE  129 (214)
Q Consensus        93 a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~  129 (214)
                      |+|.|++.|+|+||+|+|+|+.+.|++|+.+++.+.+
T Consensus        76 a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~  112 (279)
T PRK10018         76 VRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQ  112 (279)
T ss_pred             HHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHHHh
Confidence            9999999999999999999999999999999998865

>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis

Probab=99.91  E-value=1.2e-23  Score=162.82  Aligned_cols=116  Identities=18%  Similarity=0.275  Sum_probs=100.1

Q ss_pred             CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCC-hHHHHHHHHhhcCCCcEEEEEcCCCcchHHH
Q psy1766          15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSN-LHGEVETFVKGLNNGRVHLYRTSKREGLIRA   93 (214)
Q Consensus        15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~-t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a   93 (214)
                      |++|||||+||++++.|.+||+|+++|+++.  +|||||||||+  |+ +.+.++.+..+.  +.++++..+++.|.+.+
T Consensus         1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~--~eiivvd~gs~--d~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~a   74 (202)
T cd04184           1 PLISIVMPVYNTPEKYLREAIESVRAQTYPN--WELCIADDAST--DPEVKRVLKKYAAQD--PRIKVVFREENGGISAA   74 (202)
T ss_pred             CeEEEEEecccCcHHHHHHHHHHHHhCcCCC--eEEEEEeCCCC--ChHHHHHHHHHHhcC--CCEEEEEcccCCCHHHH
Confidence            6799999999998789999999999999887  79999999999  65 455666665553  67888888899999999


Q ss_pred             HHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhc-CCCEEEE
Q psy1766          94 RMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAE-RTNTVTV  136 (214)
Q Consensus        94 ~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~vv~  136 (214)
                      +|.|++.++++|++|+|+|+.+++++++.+++.+.+ ....+++
T Consensus        75 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~  118 (202)
T cd04184          75 TNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIY  118 (202)
T ss_pred             HHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEE
Confidence            999999999999999999999999999999999843 3333443

The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB

Probab=99.91  E-value=2.2e-24  Score=183.22  Aligned_cols=122  Identities=17%  Similarity=0.183  Sum_probs=105.0

Q ss_pred             CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCC-CcEEEEEcC----C
Q psy1766          12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNN-GRVHLYRTS----K   86 (214)
Q Consensus        12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~-~~v~~i~~~----~   86 (214)
                      +..|+||||||+||++ +.|.+||+|+.+|+++.. +|||||||+|+  |+|.++++++.++++. .++++++.+    .
T Consensus        37 ~~~p~VSVIIpa~Ne~-~~L~~~L~sL~~q~yp~~-~eIIVVDd~St--D~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g  112 (384)
T TIGR03469        37 EAWPAVVAVVPARNEA-DVIGECVTSLLEQDYPGK-LHVILVDDHST--DGTADIARAAARAYGRGDRLTVVSGQPLPPG  112 (384)
T ss_pred             CCCCCEEEEEecCCcH-hHHHHHHHHHHhCCCCCc-eEEEEEeCCCC--CcHHHHHHHHHHhcCCCCcEEEecCCCCCCC
Confidence            5789999999999999 999999999999999843 79999999999  8999999999876521 278888743    2


Q ss_pred             CcchHHHHHhhhhhcC-----CCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEe
Q psy1766          87 REGLIRARMFGAKYAT-----GKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP  137 (214)
Q Consensus        87 ~~G~~~a~n~g~~~a~-----gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~  137 (214)
                      ..|++.|+|.|++.|+     +||++|+|+|+.++|++++++++.+.+++..++++
T Consensus       113 ~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~  168 (384)
T TIGR03469       113 WSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSL  168 (384)
T ss_pred             CcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEe
Confidence            3588899999999999     99999999999999999999999997655444443

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=99.91  E-value=3e-23  Score=154.71  Aligned_cols=121  Identities=30%  Similarity=0.461  Sum_probs=102.8

Q ss_pred             EEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhh
Q psy1766          18 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFG   97 (214)
Q Consensus        18 SVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g   97 (214)
                      |||||+||+. +.|.++|+|+.+|+...  +|||||||||+  |++.++++++.+.  ..++++++.+.|.|.+.++|.|
T Consensus         1 Svvip~~n~~-~~l~~~l~sl~~q~~~~--~eiivvdd~s~--d~~~~~~~~~~~~--~~~i~~i~~~~n~g~~~~~n~~   73 (169)
T PF00535_consen    1 SVVIPTYNEA-EYLERTLESLLKQTDPD--FEIIVVDDGST--DETEEILEEYAES--DPNIRYIRNPENLGFSAARNRG   73 (169)
T ss_dssp             EEEEEESS-T-TTHHHHHHHHHHHSGCE--EEEEEEECS-S--SSHHHHHHHHHCC--STTEEEEEHCCCSHHHHHHHHH
T ss_pred             CEEEEeeCCH-HHHHHHHHHHhhccCCC--EEEEEeccccc--ccccccccccccc--cccccccccccccccccccccc
Confidence            8999999998 99999999999997666  79999999998  8999999999873  4799999999999999999999


Q ss_pred             hhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeeecCC
Q psy1766          98 AKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINAD  145 (214)
Q Consensus        98 ~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~  145 (214)
                      ++.|+++|++++|+|+.+.+++|+.+++.+.+++..++++........
T Consensus        74 ~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  121 (169)
T PF00535_consen   74 IKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDD  121 (169)
T ss_dssp             HHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECT
T ss_pred             ccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCC
Confidence            999999999999999999999999999999886665555554444333

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....

>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis

Probab=99.90  E-value=4.4e-23  Score=159.65  Aligned_cols=118  Identities=17%  Similarity=0.257  Sum_probs=100.8

Q ss_pred             CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcc---hH
Q psy1766          15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREG---LI   91 (214)
Q Consensus        15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G---~~   91 (214)
                      |++|||||+||++ ..|.++|+|+.+|++++  +|||||||+|+  |++.++++++..+++..+++++....+.|   .+
T Consensus         1 p~vsviip~~n~~-~~l~~~L~sl~~q~~~~--~eiivVdd~s~--d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   75 (196)
T cd02520           1 PGVSILKPLCGVD-PNLYENLESFFQQDYPK--YEILFCVQDED--DPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKV   75 (196)
T ss_pred             CCeEEEEecCCCC-ccHHHHHHHHHhccCCC--eEEEEEeCCCc--chHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhH
Confidence            6799999999999 99999999999999988  79999999999  89999999998876334577777665655   34


Q ss_pred             HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEe
Q psy1766          92 RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP  137 (214)
Q Consensus        92 ~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~  137 (214)
                      .++|.|++.++|||++|+|+|+.++|+||+.+++.+..+...++++
T Consensus        76 ~~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~  121 (196)
T cd02520          76 NNLIKGYEEARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTC  121 (196)
T ss_pred             HHHHHHHHhCCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEe
Confidence            5788999999999999999999999999999999986544444443

UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.

>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily

Probab=99.90  E-value=2.5e-23  Score=165.97  Aligned_cols=117  Identities=14%  Similarity=0.143  Sum_probs=101.0

Q ss_pred             CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHH
Q psy1766          15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRAR   94 (214)
Q Consensus        15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~   94 (214)
                      |++|||||+||++ +.|.++|+|+.+|+++...+|||||||+|+  |.|.++++++.... ..++.++....+.|++.|+
T Consensus         1 p~vsIiIp~~Ne~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~--d~t~~i~~~~~~~~-~~~i~~~~~~~~~G~~~a~   76 (241)
T cd06427           1 PVYTILVPLYKEA-EVLPQLIASLSALDYPRSKLDVKLLLEEDD--EETIAAARALRLPS-IFRVVVVPPSQPRTKPKAC   76 (241)
T ss_pred             CeEEEEEecCCcH-HHHHHHHHHHHhCcCCcccEEEEEEECCCC--chHHHHHHHhccCC-CeeEEEecCCCCCchHHHH
Confidence            6899999999999 999999999999999764579999999999  89999999875421 2356666666788999999


Q ss_pred             HhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcC-CCEEE
Q psy1766          95 MFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAER-TNTVT  135 (214)
Q Consensus        95 n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~-~~~vv  135 (214)
                      |.|+++++||||+|+|+|+.++++++.++++.+.++ .++++
T Consensus        77 n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~  118 (241)
T cd06427          77 NYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLAC  118 (241)
T ss_pred             HHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEE
Confidence            999999999999999999999999999999999754 44433

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot

>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase

Probab=99.90  E-value=1.1e-22  Score=162.48  Aligned_cols=122  Identities=22%  Similarity=0.269  Sum_probs=104.3

Q ss_pred             CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchH
Q psy1766          12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLI   91 (214)
Q Consensus        12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~   91 (214)
                      ..+|++|||||+||++ +.|..++.++.++......+|||||||||+  |+|.++++++..+++...++++..++|.|.+
T Consensus         6 ~~~~~vsVvIp~yne~-~~l~~~l~~l~~~~~~~~~~eiivvDdgS~--D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~   82 (243)
T PLN02726          6 EGAMKYSIIVPTYNER-LNIALIVYLIFKALQDVKDFEIIVVDDGSP--DGTQDVVKQLQKVYGEDRILLRPRPGKLGLG   82 (243)
T ss_pred             CCCceEEEEEccCCch-hhHHHHHHHHHHHhccCCCeEEEEEeCCCC--CCHHHHHHHHHHhcCCCcEEEEecCCCCCHH
Confidence            4578999999999999 999999988866433221379999999999  8999999998887644578888888899999


Q ss_pred             HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766          92 RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus        92 ~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~  136 (214)
                      .|+|.|++.|+|+|++|+|+|+.++|++|+.+++.+.++...+++
T Consensus        83 ~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~  127 (243)
T PLN02726         83 TAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVT  127 (243)
T ss_pred             HHHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEE
Confidence            999999999999999999999999999999999998665444444

>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111

Probab=99.90  E-value=1.7e-22  Score=174.34  Aligned_cols=121  Identities=18%  Similarity=0.263  Sum_probs=108.7

Q ss_pred             CCCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcch
Q psy1766          11 PSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGL   90 (214)
Q Consensus        11 ~~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~   90 (214)
                      .+..|++|||||+||++ +.|.+||+|+.+|+++...+|||||||||+  |+|.++++++.+++  ++++++..+++.|+
T Consensus        45 ~~~~P~vsVIIP~yNe~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~St--D~T~~il~~~~~~~--~~v~v~~~~~~~Gk  119 (439)
T TIGR03111        45 IGKLPDITIIIPVYNSE-DTLFNCIESIYNQTYPIELIDIILANNQST--DDSFQVFCRAQNEF--PGLSLRYMNSDQGK  119 (439)
T ss_pred             cCCCCCEEEEEEeCCCh-HHHHHHHHHHHhcCCCCCCeEEEEEECCCC--hhHHHHHHHHHHhC--CCeEEEEeCCCCCH
Confidence            36689999999999999 999999999999999976679999999999  89999999888775  67777766778999


Q ss_pred             HHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766          91 IRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus        91 ~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~  136 (214)
                      +.|+|.|++.++|+||+++|+|+.+++++++++++.+.+++++.++
T Consensus       120 a~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v  165 (439)
T TIGR03111       120 AKALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAM  165 (439)
T ss_pred             HHHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEE
Confidence            9999999999999999999999999999999999999876655443

Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).

>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis

Probab=99.90  E-value=1e-22  Score=157.62  Aligned_cols=122  Identities=22%  Similarity=0.226  Sum_probs=104.7

Q ss_pred             EEEEEEeCCC-chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHh
Q psy1766          18 SVIICFYNEH-PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMF   96 (214)
Q Consensus        18 SVIIp~~n~~-~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~   96 (214)
                      |||||+||++ .++|.+||+|+++|++++  +|||||||||++ |.+.++++++..++   +++++..++|.|.+.|+|.
T Consensus         1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~--~eiiivdd~ss~-d~t~~~~~~~~~~~---~i~~i~~~~n~G~~~a~N~   74 (201)
T cd04195           1 SVLMSVYIKEKPEFLREALESILKQTLPP--DEVVLVKDGPVT-QSLNEVLEEFKRKL---PLKVVPLEKNRGLGKALNE   74 (201)
T ss_pred             CEEEEccccchHHHHHHHHHHHHhcCCCC--cEEEEEECCCCc-hhHHHHHHHHHhcC---CeEEEEcCccccHHHHHHH
Confidence            7999999987 359999999999999986  699999999854 88999999988875   4899998899999999999


Q ss_pred             hhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCC-CEEEEeeeeeecCC
Q psy1766          97 GAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERT-NTVTVPIIDIINAD  145 (214)
Q Consensus        97 g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~-~~vv~~~~~~~~~~  145 (214)
                      |++.++|+||+|+|+|+.++|++++.++..+.+++ ..++++....++.+
T Consensus        75 g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (201)
T cd04195          75 GLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSD  124 (201)
T ss_pred             HHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCC
Confidence            99999999999999999999999999999997654 44555545444433

AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex

Probab=99.89  E-value=1.6e-22  Score=160.32  Aligned_cols=123  Identities=17%  Similarity=0.150  Sum_probs=101.0

Q ss_pred             CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC--CCcEEEEEcCCCcc-hH
Q psy1766          15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN--NGRVHLYRTSKREG-LI   91 (214)
Q Consensus        15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~--~~~v~~i~~~~~~G-~~   91 (214)
                      |+||||||+||++ +.|.+||+|+++|+++...+||||||| |+  |+|.++++++..++.  ..+++++....+.| ++
T Consensus         1 p~vSViIp~yNe~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~--D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~   76 (232)
T cd06437           1 PMVTVQLPVFNEK-YVVERLIEAACALDYPKDRLEIQVLDD-ST--DETVRLAREIVEEYAAQGVNIKHVRRADRTGYKA   76 (232)
T ss_pred             CceEEEEecCCcH-HHHHHHHHHHHhcCCCccceEEEEEEC-CC--CcHHHHHHHHHHHHhhcCCceEEEECCCCCCCch
Confidence            5799999999999 999999999999999865579999998 88  899999988765431  35677777666667 68


Q ss_pred             HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeee
Q psy1766          92 RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDI  141 (214)
Q Consensus        92 ~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~  141 (214)
                      .|+|.|++.++|+||+|+|+|+.++|+||+.+...+......++.+.+..
T Consensus        77 ~a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~  126 (232)
T cd06437          77 GALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGH  126 (232)
T ss_pred             HHHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceee
Confidence            89999999999999999999999999999997776654444455554433

Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily

Probab=99.89  E-value=2.7e-22  Score=160.56  Aligned_cols=127  Identities=25%  Similarity=0.295  Sum_probs=112.4

Q ss_pred             CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchH
Q psy1766          12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLI   91 (214)
Q Consensus        12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~   91 (214)
                      +.+|++|||||+||++ +.|.+||+|+.+|+++...+|||||||+|+  |.+.++++++..+    +++++..+++.|.+
T Consensus        26 ~~~~~isVvip~~n~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~----~v~~i~~~~~~g~~   98 (251)
T cd06439          26 AYLPTVTIIIPAYNEE-AVIEAKLENLLALDYPRDRLEIIVVSDGST--DGTAEIAREYADK----GVKLLRFPERRGKA   98 (251)
T ss_pred             CCCCEEEEEEecCCcH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCC--ccHHHHHHHHhhC----cEEEEEcCCCCChH
Confidence            6788999999999999 999999999999998765579999999999  8999999987553    68888888899999


Q ss_pred             HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeeecCC
Q psy1766          92 RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINAD  145 (214)
Q Consensus        92 ~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~  145 (214)
                      .++|.|++.+++||++|+|+|+.+++++++++++.+.++...++++.....+.+
T Consensus        99 ~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~  152 (251)
T cd06439          99 AALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGG  152 (251)
T ss_pred             HHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCc
Confidence            999999999999999999999999999999999999766666777666655443

This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.

>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.89  E-value=2.9e-22  Score=156.09  Aligned_cols=115  Identities=20%  Similarity=0.198  Sum_probs=101.8

Q ss_pred             EEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhh
Q psy1766          18 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFG   97 (214)
Q Consensus        18 SVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g   97 (214)
                      |||||+||++ +.|.+||+|+++|+++.  +|||||||||+  |+|.++++++..++ +..++++..+.+.|.+.++|.|
T Consensus         1 sIvIp~yn~~-~~l~~~l~sl~~q~~~~--~eiiVvddgS~--d~t~~~~~~~~~~~-~~~~~~~~~~~~~G~~~~~n~g   74 (214)
T cd04196           1 AVLMATYNGE-KYLREQLDSILAQTYKN--DELIISDDGST--DGTVEIIKEYIDKD-PFIIILIRNGKNLGVARNFESL   74 (214)
T ss_pred             CEEEEecCcH-HHHHHHHHHHHhCcCCC--eEEEEEeCCCC--CCcHHHHHHHHhcC-CceEEEEeCCCCccHHHHHHHH
Confidence            6999999999 99999999999999886  79999999999  89999999998876 3467788888899999999999


Q ss_pred             hhhcCCCEEEEEcCCCccCcCchHHHHHHHhcC-CCEEEEee
Q psy1766          98 AKYATGKVLVFLDSHIEVNTHWLEPLLVPIAER-TNTVTVPI  138 (214)
Q Consensus        98 ~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~-~~~vv~~~  138 (214)
                      +..++|+||+|+|+|+.+.|++|..+++.+.++ ...+++..
T Consensus        75 ~~~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~  116 (214)
T cd04196          75 LQAADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSD  116 (214)
T ss_pred             HHhCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecC
Confidence            999999999999999999999999999995444 44444443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine

Probab=99.89  E-value=3.2e-22  Score=157.25  Aligned_cols=119  Identities=18%  Similarity=0.182  Sum_probs=101.8

Q ss_pred             EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc----CCCcchHHHH
Q psy1766          19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT----SKREGLIRAR   94 (214)
Q Consensus        19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~----~~~~G~~~a~   94 (214)
                      ||||+||++ +.|.+||+|+++|+++.. +|||||||||+  |+|.++++++..++...+++++..    +.+.|.+.|+
T Consensus         1 ViIp~yn~~-~~l~~~l~sl~~q~~~~~-~eiiVvDd~S~--d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~   76 (219)
T cd06913           1 IILPVHNGE-QWLDECLESVLQQDFEGT-LELSVFNDAST--DKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAK   76 (219)
T ss_pred             CEEeecCcH-HHHHHHHHHHHhCCCCCC-EEEEEEeCCCC--ccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHH
Confidence            699999999 999999999999998732 79999999999  899999999887764456777642    3568999999


Q ss_pred             HhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeee
Q psy1766          95 MFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDI  141 (214)
Q Consensus        95 n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~  141 (214)
                      |.|++.|+|+|++|+|+|+.+.|++++.++..+.+++..++++.+..
T Consensus        77 N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~  123 (219)
T cd06913          77 NQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRR  123 (219)
T ss_pred             HHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEe
Confidence            99999999999999999999999999999988877666666554443

This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.

>PRK10063 putative glycosyl transferase; Provisional

Probab=99.88  E-value=9.7e-22  Score=157.64  Aligned_cols=115  Identities=17%  Similarity=0.129  Sum_probs=94.2

Q ss_pred             CceEEEEEEeCCCchHHHHHHHHHHhc---CCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchH
Q psy1766          15 PSTSVIICFYNEHPATLYRSVQTLLSR---TGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLI   91 (214)
Q Consensus        15 p~vSVIIp~~n~~~~~l~~~l~sl~~q---~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~   91 (214)
                      |++|||||+||++ +.|.+||+|+.+|   ++.+  +|||||||||+  |+|.++++++..+   .+++++.. ++.|.+
T Consensus         1 ~~vSVIi~~yN~~-~~l~~~l~sl~~~~~~~~~~--~EiIVvDdgSt--D~t~~i~~~~~~~---~~i~~i~~-~~~G~~   71 (248)
T PRK10063          1 MLLSVITVAFRNL-EGIVKTHASLRHLAQDPGIS--FEWIVVDGGSN--DGTREFLENLNGI---FNLRFVSE-PDNGIY   71 (248)
T ss_pred             CeEEEEEEeCCCH-HHHHHHHHHHHHHHhCCCCC--EEEEEEECcCc--ccHHHHHHHhccc---CCEEEEEC-CCCCHH
Confidence            6899999999999 9999999999753   3444  79999999999  8999999987654   36888875 477999


Q ss_pred             HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEee
Q psy1766          92 RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPI  138 (214)
Q Consensus        92 ~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~  138 (214)
                      .|+|.|++.|+|+||+|+|+|+.+.|+.++.+.....+++..++++.
T Consensus        72 ~A~N~Gi~~a~g~~v~~ld~DD~~~~~~~~~~~~~~~~~~~~~v~g~  118 (248)
T PRK10063         72 DAMNKGIAMAQGRFALFLNSGDIFHQDAANFVRQLKMQKDNAMIIGD  118 (248)
T ss_pred             HHHHHHHHHcCCCEEEEEeCCcccCcCHHHHHHHHHhCCCCeEEEee
Confidence            99999999999999999999999999876654444444445555443

>PRK11204 N-glycosyltransferase; Provisional

Probab=99.88  E-value=6.1e-22  Score=170.09  Aligned_cols=118  Identities=19%  Similarity=0.254  Sum_probs=107.8

Q ss_pred             CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchH
Q psy1766          12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLI   91 (214)
Q Consensus        12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~   91 (214)
                      ...|++||+||+|||+ +.+.+|++|+.+|++++  +|||||||||+  |++.+.++++..++  +++++++.++|.|++
T Consensus        51 ~~~p~vsViIp~yne~-~~i~~~l~sl~~q~yp~--~eiiVvdD~s~--d~t~~~l~~~~~~~--~~v~~i~~~~n~Gka  123 (420)
T PRK11204         51 KEYPGVSILVPCYNEG-ENVEETISHLLALRYPN--YEVIAINDGSS--DNTGEILDRLAAQI--PRLRVIHLAENQGKA  123 (420)
T ss_pred             CCCCCEEEEEecCCCH-HHHHHHHHHHHhCCCCC--eEEEEEECCCC--ccHHHHHHHHHHhC--CcEEEEEcCCCCCHH
Confidence            4568999999999999 99999999999999987  79999999999  89999999998875  689999988899999


Q ss_pred             HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766          92 RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus        92 ~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~  136 (214)
                      .|+|.|++.+++||++++|+|+.++|++++++++.+++++...++
T Consensus       124 ~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v  168 (420)
T PRK11204        124 NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAV  168 (420)
T ss_pred             HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEE
Confidence            999999999999999999999999999999999999766655443

>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose

Probab=99.88  E-value=1.1e-21  Score=155.01  Aligned_cols=119  Identities=13%  Similarity=0.103  Sum_probs=100.6

Q ss_pred             CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcc-hHHH
Q psy1766          15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREG-LIRA   93 (214)
Q Consensus        15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G-~~~a   93 (214)
                      |+||||||+||++.+.|++||+|++.|++++..+|||||||||+  |++.++++++..++   .++++..+.+.| .+++
T Consensus         1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~~   75 (234)
T cd06421           1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRR--PELRALAAELGVEY---GYRYLTRPDNRHAKAGN   75 (234)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCc--hhHHHHHHHhhccc---CceEEEeCCCCCCcHHH
Confidence            68999999999863679999999999999875569999999999  89999999987653   566666665555 6778


Q ss_pred             HHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCC-EEEEee
Q psy1766          94 RMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTN-TVTVPI  138 (214)
Q Consensus        94 ~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~-~vv~~~  138 (214)
                      +|.|++.++||||+|+|+|+.++|++|+.++..+.+++. .++++.
T Consensus        76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~  121 (234)
T cd06421          76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTP  121 (234)
T ss_pred             HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecc
Confidence            999999999999999999999999999999999987444 444443

Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.

>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis

Probab=99.88  E-value=1e-21  Score=151.12  Aligned_cols=115  Identities=22%  Similarity=0.273  Sum_probs=96.9

Q ss_pred             EEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhh
Q psy1766          18 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFG   97 (214)
Q Consensus        18 SVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g   97 (214)
                      |||||+||++ +.|.+||.|+.+|++++  +|||||||+|+  |++.++++++..+     +.++...++.|.+.++|.|
T Consensus         1 sivi~~~n~~-~~l~~~l~sl~~q~~~~--~evivvDd~s~--d~~~~~~~~~~~~-----~~~~~~~~~~g~~~a~n~~   70 (202)
T cd06433           1 SIITPTYNQA-ETLEETIDSVLSQTYPN--IEYIVIDGGST--DGTVDIIKKYEDK-----ITYWISEPDKGIYDAMNKG   70 (202)
T ss_pred             CEEEeccchH-HHHHHHHHHHHhCCCCC--ceEEEEeCCCC--ccHHHHHHHhHhh-----cEEEEecCCcCHHHHHHHH
Confidence            6999999999 99999999999999987  79999999999  8999999987543     3344457899999999999


Q ss_pred             hhhcCCCEEEEEcCCCccCcCchHHHHHHHhc-CCCEEEEeeeeee
Q psy1766          98 AKYATGKVLVFLDSHIEVNTHWLEPLLVPIAE-RTNTVTVPIIDII  142 (214)
Q Consensus        98 ~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~vv~~~~~~~  142 (214)
                      ++.|+++||+|+|+|+.+.++++..++..+.. ....++++.....
T Consensus        71 ~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~  116 (202)
T cd06433          71 IALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLV  116 (202)
T ss_pred             HHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEE
Confidence            99999999999999999999999999966643 3444555444433

Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PRK14583 hmsR N-glycosyltransferase; Provisional

Probab=99.88  E-value=1.7e-21  Score=168.49  Aligned_cols=117  Identities=21%  Similarity=0.278  Sum_probs=106.9

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR   92 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~   92 (214)
                      ..|.+|||||+|||+ ..+.+||+|+++|++++  +|||||||||+  |+|.+.++++.+++  +++++++.++|.|++.
T Consensus        73 ~~p~vsViIP~yNE~-~~i~~~l~sll~q~yp~--~eIivVdDgs~--D~t~~~~~~~~~~~--~~v~vv~~~~n~Gka~  145 (444)
T PRK14583         73 GHPLVSILVPCFNEG-LNARETIHAALAQTYTN--IEVIAINDGSS--DDTAQVLDALLAED--PRLRVIHLAHNQGKAI  145 (444)
T ss_pred             CCCcEEEEEEeCCCH-HHHHHHHHHHHcCCCCC--eEEEEEECCCC--ccHHHHHHHHHHhC--CCEEEEEeCCCCCHHH
Confidence            468899999999999 99999999999999997  79999999999  89999999988875  7899998888999999


Q ss_pred             HHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766          93 ARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus        93 a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~  136 (214)
                      |+|.|++.+++||++++|+|+.++++++.++++.+.+++...++
T Consensus       146 AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v  189 (444)
T PRK14583        146 ALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAV  189 (444)
T ss_pred             HHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEE
Confidence            99999999999999999999999999999999998766554443

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI

Probab=99.88  E-value=2e-21  Score=164.51  Aligned_cols=120  Identities=16%  Similarity=0.267  Sum_probs=102.7

Q ss_pred             CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcc--
Q psy1766          12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREG--   89 (214)
Q Consensus        12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G--   89 (214)
                      ...|.||||||+||++ +.|.+||+|+++|+|++  +||||+||+|+  |.+.++++++.+++++.+++++..+.+.|  
T Consensus        38 ~~~p~VSViiP~~nee-~~l~~~L~Sl~~q~Yp~--~EIivvdd~s~--D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~  112 (373)
T TIGR03472        38 RAWPPVSVLKPLHGDE-PELYENLASFCRQDYPG--FQMLFGVQDPD--DPALAVVRRLRADFPDADIDLVIDARRHGPN  112 (373)
T ss_pred             CCCCCeEEEEECCCCC-hhHHHHHHHHHhcCCCC--eEEEEEeCCCC--CcHHHHHHHHHHhCCCCceEEEECCCCCCCC
Confidence            4578999999999999 99999999999999998  79999999999  89999999998887555688887666555  


Q ss_pred             -hHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766          90 -LIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus        90 -~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~  136 (214)
                       +..+.+.+++.|+||+++|+|+|+.++|+||++++..+++....+++
T Consensus       113 ~K~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~  160 (373)
T TIGR03472       113 RKVSNLINMLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVT  160 (373)
T ss_pred             hHHHHHHHHHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEe
Confidence             44566667899999999999999999999999999999654444444

This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano

>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1

Probab=99.87  E-value=1.3e-21  Score=153.65  Aligned_cols=112  Identities=27%  Similarity=0.309  Sum_probs=100.2

Q ss_pred             EEEEEeCCCchHHHHHHHHHHhcCC-CCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhh
Q psy1766          19 VIICFYNEHPATLYRSVQTLLSRTG-QSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFG   97 (214)
Q Consensus        19 VIIp~~n~~~~~l~~~l~sl~~q~~-~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g   97 (214)
                      ||||+||++ ..|.++|+|+.+|++ ..  +|||||||||+  |++.++++++.+++  +.+++++.+.+.|.+.|+|.|
T Consensus         1 ViIp~yn~~-~~l~~~l~sl~~q~~~~~--~eiiiVDd~S~--d~t~~~~~~~~~~~--~~i~~~~~~~n~G~~~a~n~g   73 (224)
T cd06442           1 IIIPTYNER-ENIPELIERLDAALKGID--YEIIVVDDNSP--DGTAEIVRELAKEY--PRVRLIVRPGKRGLGSAYIEG   73 (224)
T ss_pred             CeEeccchh-hhHHHHHHHHHHhhcCCC--eEEEEEeCCCC--CChHHHHHHHHHhC--CceEEEecCCCCChHHHHHHH
Confidence            699999999 999999999999997 44  79999999999  89999999988775  678888889999999999999


Q ss_pred             hhhcCCCEEEEEcCCCccCcCchHHHHHHHh-cCCCEEEEe
Q psy1766          98 AKYATGKVLVFLDSHIEVNTHWLEPLLVPIA-ERTNTVTVP  137 (214)
Q Consensus        98 ~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~vv~~  137 (214)
                      ++.|+||||+|+|+|+.+.|++++.+++.+. ++.+.++++
T Consensus        74 ~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~  114 (224)
T cd06442          74 FKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGS  114 (224)
T ss_pred             HHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence            9999999999999999999999999999964 445555543

Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan

Probab=99.87  E-value=1.6e-21  Score=155.31  Aligned_cols=119  Identities=18%  Similarity=0.211  Sum_probs=103.2

Q ss_pred             ceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHH
Q psy1766          16 STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARM   95 (214)
Q Consensus        16 ~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n   95 (214)
                      ++|||||+||++ +.|.++|.++.+|+++...+|||||||+|+  |++.+.++++..+.  +.++++..+ +.|.+.|+|
T Consensus         1 ~~sIiip~~n~~-~~l~~~l~sl~~q~~~~~~~evivvd~~s~--d~~~~~~~~~~~~~--~~v~~i~~~-~~~~~~a~N   74 (249)
T cd02525           1 FVSIIIPVRNEE-KYIEELLESLLNQSYPKDLIEIIVVDGGST--DGTREIVQEYAAKD--PRIRLIDNP-KRIQSAGLN   74 (249)
T ss_pred             CEEEEEEcCCch-hhHHHHHHHHHhccCCCCccEEEEEeCCCC--ccHHHHHHHHHhcC--CeEEEEeCC-CCCchHHHH
Confidence            489999999999 999999999999998633489999999999  89999999988764  678888854 668999999


Q ss_pred             hhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeee
Q psy1766          96 FGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIID  140 (214)
Q Consensus        96 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~  140 (214)
                      .|++.|++||++|+|+|+.++|++|+++++.+.+....++++...
T Consensus        75 ~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~  119 (249)
T cd02525          75 IGIRNSRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPME  119 (249)
T ss_pred             HHHHHhCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEeccee
Confidence            999999999999999999999999999999887665555554433

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.

>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1

Probab=99.87  E-value=3.7e-22  Score=152.27  Aligned_cols=111  Identities=23%  Similarity=0.264  Sum_probs=97.3

Q ss_pred             EEEEEeCCCchHHHHHHHHHHhcC---CCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHH
Q psy1766          19 VIICFYNEHPATLYRSVQTLLSRT---GQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARM   95 (214)
Q Consensus        19 VIIp~~n~~~~~l~~~l~sl~~q~---~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n   95 (214)
                      ||||+||++ +.|.++|+++..+.   ...  +|||||||||+  |++.+.++.+..+.  ++++++...+|.|.+.|+|
T Consensus         1 viIp~~n~~-~~l~~~l~sl~~~~~~~~~~--~eiivvdd~s~--d~t~~~~~~~~~~~--~~i~~i~~~~n~G~~~a~n   73 (181)
T cd04187           1 IVVPVYNEE-ENLPELYERLKAVLESLGYD--YEIIFVDDGST--DRTLEILRELAARD--PRVKVIRLSRNFGQQAALL   73 (181)
T ss_pred             CEEeecCch-hhHHHHHHHHHHHHHhcCCC--eEEEEEeCCCC--ccHHHHHHHHHhhC--CCEEEEEecCCCCcHHHHH
Confidence            699999999 88888888876554   344  79999999999  89999999988775  6899998889999999999


Q ss_pred             hhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766          96 FGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus        96 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~  136 (214)
                      .|++.++++|++++|+|+.++++|++.+++.+.++.+++.+
T Consensus        74 ~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~v~g  114 (181)
T cd04187          74 AGLDHARGDAVITMDADLQDPPELIPEMLAKWEEGYDVVYG  114 (181)
T ss_pred             HHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhCCCcEEEE
Confidence            99999999999999999999999999999997666555444

A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.

>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional

Probab=99.87  E-value=3.3e-21  Score=160.17  Aligned_cols=116  Identities=22%  Similarity=0.275  Sum_probs=99.9

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHH---hcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcc
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLL---SRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREG   89 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~---~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G   89 (214)
                      .++++|||||+||++ +.|.++++++.   +|...+  +|||||||||+  |+|.++++++.++. +.+++.+..+.|.|
T Consensus         4 ~~~~vSVVIP~yNE~-~~i~~~l~~l~~~~~~~~~~--~EIIvVDDgS~--D~T~~il~~~~~~~-~~~v~~i~~~~n~G   77 (325)
T PRK10714          4 PIKKVSVVIPVYNEQ-ESLPELIRRTTAACESLGKE--YEILLIDDGSS--DNSAEMLVEAAQAP-DSHIVAILLNRNYG   77 (325)
T ss_pred             CCCeEEEEEcccCch-hhHHHHHHHHHHHHHhCCCC--EEEEEEeCCCC--CcHHHHHHHHHhhc-CCcEEEEEeCCCCC
Confidence            456799999999999 88888888764   455544  79999999999  89999999887653 45677777788999


Q ss_pred             hHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEE
Q psy1766          90 LIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTV  134 (214)
Q Consensus        90 ~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~v  134 (214)
                      ++.|+|.|+++|+||+++++|+|+..+|+++.++++.++++.++|
T Consensus        78 ~~~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~DvV  122 (325)
T PRK10714         78 QHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEGYDVV  122 (325)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHhhCCEE
Confidence            999999999999999999999999999999999999997765544

>cd06423 CESA_like CESA_like is the cellulose synthase superfamily

Probab=99.87  E-value=2.5e-21  Score=144.81  Aligned_cols=118  Identities=25%  Similarity=0.302  Sum_probs=99.9

Q ss_pred             EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhh
Q psy1766          19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGA   98 (214)
Q Consensus        19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~   98 (214)
                      ||||+||++ +.|.++|.|+++|+++.  +||+||||+|+  |.+.+.+.++.... ...+.++...++.|.+.++|.|+
T Consensus         1 Viip~~n~~-~~l~~~l~sl~~q~~~~--~~iivvdd~s~--d~t~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~n~~~   74 (180)
T cd06423           1 IIVPAYNEE-AVIERTIESLLALDYPK--LEVIVVDDGST--DDTLEILEELAALY-IRRVLVVRDKENGGKAGALNAGL   74 (180)
T ss_pred             CeecccChH-HHHHHHHHHHHhCCCCc--eEEEEEeCCCc--cchHHHHHHHhccc-cceEEEEEecccCCchHHHHHHH
Confidence            689999999 99999999999999866  79999999999  89999998876653 24567777788999999999999


Q ss_pred             hhcCCCEEEEEcCCCccCcCchHHHHHHHhcCC-CEEEEeeeeee
Q psy1766          99 KYATGKVLVFLDSHIEVNTHWLEPLLVPIAERT-NTVTVPIIDII  142 (214)
Q Consensus        99 ~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~-~~vv~~~~~~~  142 (214)
                      +.++++|++|+|+|+.+.+++++.++..+.+++ ..++++.....
T Consensus        75 ~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~  119 (180)
T cd06423          75 RHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVR  119 (180)
T ss_pred             HhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEe
Confidence            999999999999999999999999966665544 44444444444

The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the

>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily

Probab=99.86  E-value=7.2e-22  Score=150.70  Aligned_cols=116  Identities=25%  Similarity=0.253  Sum_probs=101.4

Q ss_pred             EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhh
Q psy1766          19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGA   98 (214)
Q Consensus        19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~   98 (214)
                      ||||+||++ +.|.+||+|+.+|.++...+|||||||+|+  |.+.+.++++..+.  +.++++..++|.|.+.|+|.|+
T Consensus         1 iii~~~n~~-~~l~~~l~sl~~~~~~~~~~eiivvd~~s~--d~~~~~~~~~~~~~--~~~~~~~~~~n~G~~~a~n~g~   75 (185)
T cd04179           1 VVIPAYNEE-ENIPELVERLLAVLEEGYDYEIIVVDDGST--DGTAEIARELAARV--PRVRVIRLSRNFGKGAAVRAGF   75 (185)
T ss_pred             CeecccChH-hhHHHHHHHHHHHhccCCCEEEEEEcCCCC--CChHHHHHHHHHhC--CCeEEEEccCCCCccHHHHHHH
Confidence            689999999 999999999999987322379999999999  89999999988875  6778899899999999999999


Q ss_pred             hhcCCCEEEEEcCCCccCcCchHHHHHHHh-cCCCEEEEeee
Q psy1766          99 KYATGKVLVFLDSHIEVNTHWLEPLLVPIA-ERTNTVTVPII  139 (214)
Q Consensus        99 ~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~vv~~~~  139 (214)
                      +.|+|||++|+|+|+.+.|+||++++..+. .+.+.++++..
T Consensus        76 ~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~  117 (185)
T cd04179          76 KAARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRF  117 (185)
T ss_pred             HHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEee
Confidence            999999999999999999999999999854 45555555443

DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex

>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.86  E-value=1.7e-21  Score=150.98  Aligned_cols=114  Identities=17%  Similarity=0.179  Sum_probs=100.5

Q ss_pred             EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhh
Q psy1766          19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGA   98 (214)
Q Consensus        19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~   98 (214)
                      ||||+||++ +.|.+||+|+.+|+++.  +|||||||||+  |.|.+.++++....   +++++..++|.|.+.++|.|+
T Consensus         1 viI~~~n~~-~~l~~~l~sl~~q~~~~--~eiiivD~~s~--d~t~~~~~~~~~~~---~i~~~~~~~n~g~~~~~n~~~   72 (202)
T cd04185           1 AVVVTYNRL-DLLKECLDALLAQTRPP--DHIIVIDNAST--DGTAEWLTSLGDLD---NIVYLRLPENLGGAGGFYEGV   72 (202)
T ss_pred             CEEEeeCCH-HHHHHHHHHHHhccCCC--ceEEEEECCCC--cchHHHHHHhcCCC---ceEEEECccccchhhHHHHHH
Confidence            699999999 99999999999999886  69999999999  89999999987654   488999899999999999999


Q ss_pred             hhc---CCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeee
Q psy1766          99 KYA---TGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIID  140 (214)
Q Consensus        99 ~~a---~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~  140 (214)
                      +.|   ++||++|+|+|+.+++++++.+++.+.+....+++|...
T Consensus        73 ~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~  117 (202)
T cd04185          73 RRAYELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVL  117 (202)
T ss_pred             HHHhccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeE
Confidence            876   689999999999999999999999998555566665433

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional

Probab=99.86  E-value=4.8e-21  Score=159.69  Aligned_cols=115  Identities=20%  Similarity=0.197  Sum_probs=99.9

Q ss_pred             CCCCceEEEEEEeCCCchHHHHHHHHHHhcCC------CCCccEEEEEECCCCCCCChHHHHHHHHhhc--CCCcEEEEE
Q psy1766          12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTG------QSLLHEIILVNDFSEYPSNLHGEVETFVKGL--NNGRVHLYR   83 (214)
Q Consensus        12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~------~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~--~~~~v~~i~   83 (214)
                      ...|.+|||||+||++ +.|.++|+++.++..      +...+|||||||||+  |+|.++++++..++  ++.+++++.
T Consensus        67 ~~~~~isVVIP~yNe~-~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgSt--D~T~~i~~~~~~~~~~~~~~i~vi~  143 (333)
T PTZ00260         67 DSDVDLSIVIPAYNEE-DRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSK--DKTLKVAKDFWRQNINPNIDIRLLS  143 (333)
T ss_pred             CCCeEEEEEEeeCCCH-HHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCC--CchHHHHHHHHHhcCCCCCcEEEEE
Confidence            4567899999999999 999999999876532      111279999999999  89999999988763  234699999


Q ss_pred             cCCCcchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhc
Q psy1766          84 TSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAE  129 (214)
Q Consensus        84 ~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~  129 (214)
                      .+.|.|.+.|+|.|+++|+|+||+++|+|+..+++.++.+++.+.+
T Consensus       144 ~~~N~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~  189 (333)
T PTZ00260        144 LLRNKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLK  189 (333)
T ss_pred             cCCCCChHHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998853

>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.86  E-value=1e-20  Score=148.75  Aligned_cols=117  Identities=25%  Similarity=0.254  Sum_probs=99.8

Q ss_pred             EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC--CCcchHHHHHh
Q psy1766          19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS--KREGLIRARMF   96 (214)
Q Consensus        19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~--~~~G~~~a~n~   96 (214)
                      ||||+||+. +.|.+||+|++.|+++...+|||||||||+  |.+.+.++ +.......+++++..+  .+.|.+.++|.
T Consensus         1 viip~~n~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~--d~t~~~~~-~~~~~~~~~v~~~~~~~~~~~g~~~a~n~   76 (229)
T cd04192           1 VVIAARNEA-ENLPRLLQSLSALDYPKEKFEVILVDDHST--DGTVQILE-FAAAKPNFQLKILNNSRVSISGKKNALTT   76 (229)
T ss_pred             CEEEecCcH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCC--cChHHHHH-HHHhCCCcceEEeeccCcccchhHHHHHH
Confidence            699999999 999999999999999875579999999999  89999888 4444334678888765  47889999999


Q ss_pred             hhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeee
Q psy1766          97 GAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPII  139 (214)
Q Consensus        97 g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~  139 (214)
                      |++.++++||+|+|+|+.+.|+||++++..+.++...++++..
T Consensus        77 g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~  119 (229)
T cd04192          77 AIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPV  119 (229)
T ss_pred             HHHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeee
Confidence            9999999999999999999999999999988766555555433

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation

Probab=99.86  E-value=4.6e-21  Score=149.80  Aligned_cols=112  Identities=21%  Similarity=0.202  Sum_probs=98.3

Q ss_pred             EEEEEeCCCchHHHHHHHHHHhcCC----CCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHH
Q psy1766          19 VIICFYNEHPATLYRSVQTLLSRTG----QSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRAR   94 (214)
Q Consensus        19 VIIp~~n~~~~~l~~~l~sl~~q~~----~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~   94 (214)
                      ||||+||++ +.|.++|+++.+|..    ..  +|||||||||+  |+|.++++++..++ +..+++++.+.|.|.+.|+
T Consensus         1 iiip~yN~~-~~l~~~l~~l~~~~~~~~~~~--~eiivvdd~S~--D~t~~~~~~~~~~~-~~~i~~i~~~~n~G~~~a~   74 (211)
T cd04188           1 VVIPAYNEE-KRLPPTLEEAVEYLEERPSFS--YEIIVVDDGSK--DGTAEVARKLARKN-PALIRVLTLPKNRGKGGAV   74 (211)
T ss_pred             CEEcccChH-HHHHHHHHHHHHHHhccCCCC--EEEEEEeCCCC--CchHHHHHHHHHhC-CCcEEEEEcccCCCcHHHH
Confidence            699999999 999999999999864    34  79999999999  89999999998875 2236889988899999999


Q ss_pred             HhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCC-CEEEE
Q psy1766          95 MFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERT-NTVTV  136 (214)
Q Consensus        95 n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~-~~vv~  136 (214)
                      |.|++.|+|+||+++|+|+.+++++++.+++.+.++. +.+++
T Consensus        75 ~~g~~~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g  117 (211)
T cd04188          75 RAGMLAARGDYILFADADLATPFEELEKLEEALKTSGYDIAIG  117 (211)
T ss_pred             HHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence            9999999999999999999999999999999965544 44444

UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.

>KOG2978|consensus

Probab=99.85  E-value=7.5e-21  Score=141.07  Aligned_cols=118  Identities=26%  Similarity=0.340  Sum_probs=101.0

Q ss_pred             CCceEEEEEEeCCCchHHH---HHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcch
Q psy1766          14 LPSTSVIICFYNEHPATLY---RSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGL   90 (214)
Q Consensus        14 ~p~vSVIIp~~n~~~~~l~---~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~   90 (214)
                      +++.|||+|+|||. +.|.   ..+.....+...+  +|||||||+|.  |+|.+.++.+++.+...+|.+.......|.
T Consensus         2 ~~kYsvilPtYnEk-~Nlpi~~~li~~~~~e~~~~--~eiIivDD~Sp--DGt~~~a~~L~k~yg~d~i~l~pR~~klGL   76 (238)
T KOG2978|consen    2 SIKYSVILPTYNEK-ENLPIITRLIAKYMSEEGKK--YEIIIVDDASP--DGTQEVAKALQKIYGEDNILLKPRTKKLGL   76 (238)
T ss_pred             CcceeEEeccccCC-CCCeeeHHHHHhhhhhhcCc--eEEEEEeCCCC--CccHHHHHHHHHHhCCCcEEEEeccCcccc
Confidence            46799999999998 5544   4444444444444  89999999999  999999999998887889999988889999


Q ss_pred             HHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCC-CEEEE
Q psy1766          91 IRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERT-NTVTV  136 (214)
Q Consensus        91 ~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~-~~vv~  136 (214)
                      +.|.-.|+++|+|+|+++||+|...+|.++.++++..+++. +++..
T Consensus        77 gtAy~hgl~~a~g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~G  123 (238)
T KOG2978|consen   77 GTAYIHGLKHATGDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLG  123 (238)
T ss_pred             hHHHHhhhhhccCCeEEEEeCccCCCchhHHHHHHHhhccCcceeee
Confidence            99999999999999999999999999999999999988776 44443

>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function

Probab=99.85  E-value=2.2e-20  Score=146.41  Aligned_cols=110  Identities=22%  Similarity=0.233  Sum_probs=93.6

Q ss_pred             eEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHh
Q psy1766          17 TSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMF   96 (214)
Q Consensus        17 vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~   96 (214)
                      ||||||+||++ +.|.++|+|+++|++..  +|||||||+|+  |++.+.+++       .+++++.  .+.|.+.++|.
T Consensus         1 vsvii~~~n~~-~~l~~~l~sl~~q~~~~--~evivvdd~s~--d~~~~~~~~-------~~~~~~~--~~~g~~~a~n~   66 (221)
T cd02522           1 LSIIIPTLNEA-ENLPRLLASLRRLNPLP--LEIIVVDGGST--DGTVAIARS-------AGVVVIS--SPKGRARQMNA   66 (221)
T ss_pred             CEEEEEccCcH-HHHHHHHHHHHhccCCC--cEEEEEeCCCC--ccHHHHHhc-------CCeEEEe--CCcCHHHHHHH
Confidence            69999999999 99999999999999865  79999999999  888887766       3566665  45789999999


Q ss_pred             hhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeee
Q psy1766          97 GAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIID  140 (214)
Q Consensus        97 g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~  140 (214)
                      |++.|++++++|+|+|+.++++++++++..+......++++...
T Consensus        67 g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~  110 (221)
T cd02522          67 GAAAARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLR  110 (221)
T ss_pred             HHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEee
Confidence            99999999999999999999999999987776665555544333

Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase

Probab=99.85  E-value=2.4e-20  Score=147.87  Aligned_cols=115  Identities=16%  Similarity=0.311  Sum_probs=95.8

Q ss_pred             EEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChH-HHHHHHHhhcCCCcEEEEEcCCCcc-hHHHHH
Q psy1766          18 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH-GEVETFVKGLNNGRVHLYRTSKREG-LIRARM   95 (214)
Q Consensus        18 SVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~-~~~~~~~~~~~~~~v~~i~~~~~~G-~~~a~n   95 (214)
                      |||||+||++.+.|.++|+|+.+|+++.  +|||||||+|+  |++. +.++++..++ +.+++++....+.| .+.|+|
T Consensus         1 siiip~~ne~~~~l~~~l~sl~~q~~~~--~eiiVvdd~s~--D~t~~~~i~~~~~~~-~~~i~~i~~~~~~G~~~~a~n   75 (236)
T cd06435           1 SIHVPCYEEPPEMVKETLDSLAALDYPN--FEVIVIDNNTK--DEALWKPVEAHCAQL-GERFRFFHVEPLPGAKAGALN   75 (236)
T ss_pred             CeeEeeCCCcHHHHHHHHHHHHhCCCCC--cEEEEEeCCCC--chhHHHHHHHHHHHh-CCcEEEEEcCCCCCCchHHHH
Confidence            7999999997358999999999999987  79999999999  6764 6777776654 45788888776777 489999


Q ss_pred             hhhhhcC--CCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEe
Q psy1766          96 FGAKYAT--GKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP  137 (214)
Q Consensus        96 ~g~~~a~--gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~  137 (214)
                      .|++.+.  +|||+|+|+|+.++|++|..++..+++....++.+
T Consensus        76 ~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~  119 (236)
T cd06435          76 YALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQA  119 (236)
T ss_pred             HHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEec
Confidence            9999985  69999999999999999999999986544344433

NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.

>COG1216 Predicted glycosyltransferases [General function prediction only]

Probab=99.84  E-value=2.6e-20  Score=153.73  Aligned_cols=122  Identities=25%  Similarity=0.339  Sum_probs=105.4

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR   92 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~   92 (214)
                      .||++++||++||.. +.+.+||.++.+|+++.  .++++|||+|+  |.+.+.++...  +  ++++++.+++|.|.++
T Consensus         1 ~~~~i~~iiv~yn~~-~~l~~~l~~l~~~~~~~--~~iv~vDn~s~--d~~~~~~~~~~--~--~~v~~i~~~~NlG~ag   71 (305)
T COG1216           1 SMPKISIIIVTYNRG-EDLVECLASLAAQTYPD--DVIVVVDNGST--DGSLEALKARF--F--PNVRLIENGENLGFAG   71 (305)
T ss_pred             CCcceEEEEEecCCH-HHHHHHHHHHhcCCCCC--cEEEEccCCCC--CCCHHHHHhhc--C--CcEEEEEcCCCccchh
Confidence            378999999999999 99999999999999998  47778999999  89998888732  2  7999999999999999


Q ss_pred             HHHhhhhhcCCC---EEEEEcCCCccCcCchHHHHHHHhcCCCEEEE-eeeeeec
Q psy1766          93 ARMFGAKYATGK---VLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV-PIIDIIN  143 (214)
Q Consensus        93 a~n~g~~~a~gd---~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~-~~~~~~~  143 (214)
                      +.|.|++.|.++   |++++++|..+.+++|+++++.+++.+...++ |.+...+
T Consensus        72 g~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~  126 (305)
T COG1216          72 GFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYD  126 (305)
T ss_pred             hhhHHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCC
Confidence            999999999654   99999999999999999999999887665554 4444433

>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A

Probab=99.84  E-value=6.3e-21  Score=150.41  Aligned_cols=120  Identities=27%  Similarity=0.382  Sum_probs=88.1

Q ss_pred             CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcc---hH
Q psy1766          15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREG---LI   91 (214)
Q Consensus        15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G---~~   91 (214)
                      |.||||||+||+. +.|.++|+|+++|+++.  ++|+||||+|+  +++.+.++++..+++..+++++..+.+.|   ++
T Consensus         1 P~v~Vvip~~~~~-~~l~~~l~sl~~~~~~~--~~v~vvd~~~~--~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~   75 (228)
T PF13641_consen    1 PRVSVVIPAYNED-DVLRRCLESLLAQDYPR--LEVVVVDDGSD--DETAEILRALAARYPRVRVRVIRRPRNPGPGGKA   75 (228)
T ss_dssp             --EEEE--BSS-H-HHHHHHHHHHTTSHHHT--EEEEEEEE-SS--S-GCTTHHHHHHTTGG-GEEEEE----HHHHHHH
T ss_pred             CEEEEEEEecCCH-HHHHHHHHHHHcCCCCC--eEEEEEECCCC--hHHHHHHHHHHHHcCCCceEEeecCCCCCcchHH
Confidence            6799999999999 99999999999998866  79999999999  88989999988887434678888766555   78


Q ss_pred             HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeee
Q psy1766          92 RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPII  139 (214)
Q Consensus        92 ~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~  139 (214)
                      .++|.|++.+++++|+|+|+|+.++|++|..+++.+......++.+..
T Consensus        76 ~a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~  123 (228)
T PF13641_consen   76 RALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPV  123 (228)
T ss_dssp             HHHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEE
T ss_pred             HHHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeE
Confidence            899999999999999999999999999999999999544444444444

>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase

Probab=99.84  E-value=5.1e-20  Score=140.17  Aligned_cols=104  Identities=18%  Similarity=0.246  Sum_probs=89.9

Q ss_pred             EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhh
Q psy1766          19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGA   98 (214)
Q Consensus        19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~   98 (214)
                      ||||+||+. +.|.+||+|+.+|++.+  +|||||||+|+  |.+.++++++....+...+.+.+.+.+.|.+.++|.|+
T Consensus         1 ivip~~n~~-~~l~~~l~sl~~q~~~~--~eiivvdd~s~--d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~   75 (182)
T cd06420           1 LIITTYNRP-EALELVLKSVLNQSILP--FEVIIADDGST--EETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAI   75 (182)
T ss_pred             CEEeecCCh-HHHHHHHHHHHhccCCC--CEEEEEeCCCc--hhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHH
Confidence            699999999 99999999999999877  79999999999  89999999887653112333444445567899999999


Q ss_pred             hhcCCCEEEEEcCCCccCcCchHHHHHHH
Q psy1766          99 KYATGKVLVFLDSHIEVNTHWLEPLLVPI  127 (214)
Q Consensus        99 ~~a~gd~i~~lD~D~~~~~~~l~~l~~~~  127 (214)
                      +.|+|+|++|+|+|+.++++||+.+++.+
T Consensus        76 ~~a~g~~i~~lD~D~~~~~~~l~~~~~~~  104 (182)
T cd06420          76 AAAKGDYLIFIDGDCIPHPDFIADHIELA  104 (182)
T ss_pred             HHhcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence            99999999999999999999999999988

Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm

>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan

Probab=99.83  E-value=5.9e-20  Score=145.42  Aligned_cols=118  Identities=24%  Similarity=0.303  Sum_probs=98.0

Q ss_pred             ceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHH
Q psy1766          16 STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARM   95 (214)
Q Consensus        16 ~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n   95 (214)
                      .||||||+||++.+.|.+||+|+.+|+  +  +|||||||+|+  |.+.+.++....   .+.++++. .++.|++.|+|
T Consensus         1 ~isVvIp~~ne~~~~l~~~l~sl~~q~--~--~eiivvdd~s~--d~~~~~l~~~~~---~~~~~v~~-~~~~g~~~a~n   70 (235)
T cd06434           1 DVTVIIPVYDEDPDVFRECLRSILRQK--P--LEIIVVTDGDD--EPYLSILSQTVK---YGGIFVIT-VPHPGKRRALA   70 (235)
T ss_pred             CeEEEEeecCCChHHHHHHHHHHHhCC--C--CEEEEEeCCCC--hHHHHHHHhhcc---CCcEEEEe-cCCCChHHHHH
Confidence            489999999997789999999999998  3  69999999999  788887754332   25666665 67899999999


Q ss_pred             hhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeeec
Q psy1766          96 FGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIIN  143 (214)
Q Consensus        96 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~  143 (214)
                      .|++.|++|||+|+|+|+.+++++|+++++.+.+....++++.....+
T Consensus        71 ~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~~~  118 (235)
T cd06434          71 EGIRHVTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRILR  118 (235)
T ss_pred             HHHHHhCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEeec
Confidence            999999999999999999999999999999998544455555444443

Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.

>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis

Probab=99.83  E-value=4.9e-20  Score=141.01  Aligned_cols=110  Identities=22%  Similarity=0.179  Sum_probs=92.8

Q ss_pred             EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhh
Q psy1766          19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGA   98 (214)
Q Consensus        19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~   98 (214)
                      ||||+||++ +.|.++|+++.+|.++...+|||||||||+  |+|.++++++.     ..+.......+.|++.|+|.|+
T Consensus         1 VvIp~~ne~-~~i~~~l~sl~~~~~p~~~~eiivvdd~s~--D~t~~~~~~~~-----~~~~~~~~~~~~gk~~aln~g~   72 (183)
T cd06438           1 ILIPAHNEE-AVIGNTVRSLKAQDYPRELYRIFVVADNCT--DDTAQVARAAG-----ATVLERHDPERRGKGYALDFGF   72 (183)
T ss_pred             CEEeccchH-HHHHHHHHHHHhcCCCCcccEEEEEeCCCC--chHHHHHHHcC-----CeEEEeCCCCCCCHHHHHHHHH
Confidence            699999999 999999999999998644489999999999  89998887642     2343434466889999999999


Q ss_pred             hhc-----CCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766          99 KYA-----TGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus        99 ~~a-----~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~  136 (214)
                      +.+     ++++++++|+|+.++|+++..++..+.++.+.+.+
T Consensus        73 ~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g  115 (183)
T cd06438          73 RHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQA  115 (183)
T ss_pred             HHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEE
Confidence            876     49999999999999999999999999877665444

The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.

>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional

Probab=99.83  E-value=2.9e-20  Score=153.21  Aligned_cols=120  Identities=18%  Similarity=0.216  Sum_probs=96.1

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEE-EcCCCcchH
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLY-RTSKREGLI   91 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i-~~~~~~G~~   91 (214)
                      ..|++|||||+||++ +.|.++|+++.+|......+|||||||||+  |+|.++++++..+. -.....+ ....|.|++
T Consensus        29 ~~~~vSVVIPayNee-~~I~~~l~sl~~~~~~~~~~EIIVVDDgSt--D~T~~ia~~~~~~v-~~~~~~~~~~~~n~Gkg  104 (306)
T PRK13915         29 AGRTVSVVLPALNEE-ETVGKVVDSIRPLLMEPLVDELIVIDSGST--DATAERAAAAGARV-VSREEILPELPPRPGKG  104 (306)
T ss_pred             CCCCEEEEEecCCcH-HHHHHHHHHHHHHhccCCCcEEEEEeCCCc--cHHHHHHHHhcchh-hcchhhhhccccCCCHH
Confidence            568999999999999 999999999998865222269999999999  89999998864431 0111121 236789999


Q ss_pred             HHHHhhhhhcCCCEEEEEcCCCc-cCcCchHHHHHHHhcC-CCEEEE
Q psy1766          92 RARMFGAKYATGKVLVFLDSHIE-VNTHWLEPLLVPIAER-TNTVTV  136 (214)
Q Consensus        92 ~a~n~g~~~a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~-~~~vv~  136 (214)
                      .|+|.|+..++||||+|+|+|+. ++|+++..+++.+..+ ...++.
T Consensus       105 ~A~~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~  151 (306)
T PRK13915        105 EALWRSLAATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVK  151 (306)
T ss_pred             HHHHHHHHhcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEE
Confidence            99999999999999999999997 8999999999998643 334444

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=99.83  E-value=6.7e-20  Score=136.84  Aligned_cols=108  Identities=23%  Similarity=0.281  Sum_probs=95.4

Q ss_pred             EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhh
Q psy1766          19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGA   98 (214)
Q Consensus        19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~   98 (214)
                      ||||+||+. +.|.++|+|+.+|+++.  +||+||||||+  +.+.+.++++.     .+++++..+.+.|.+.|+|.|+
T Consensus         1 vii~~~~~~-~~l~~~l~sl~~~~~~~--~~iiivdd~s~--~~~~~~~~~~~-----~~~~~~~~~~~~g~~~a~n~~~   70 (166)
T cd04186           1 IIIVNYNSL-EYLKACLDSLLAQTYPD--FEVIVVDNAST--DGSVELLRELF-----PEVRLIRNGENLGFGAGNNQGI   70 (166)
T ss_pred             CEEEecCCH-HHHHHHHHHHHhccCCC--eEEEEEECCCC--chHHHHHHHhC-----CCeEEEecCCCcChHHHhhHHH
Confidence            699999998 99999999999998855  79999999999  78888877652     3688888888999999999999


Q ss_pred             hhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766          99 KYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus        99 ~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~  136 (214)
                      +.+++++++|+|+|+.+.+++++.+++.+.+++...++
T Consensus        71 ~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~  108 (166)
T cd04186          71 REAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIV  108 (166)
T ss_pred             hhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEE
Confidence            99999999999999999999999999988766554443

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide

Probab=99.82  E-value=2.7e-19  Score=141.82  Aligned_cols=113  Identities=20%  Similarity=0.230  Sum_probs=95.7

Q ss_pred             ceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHH
Q psy1766          16 STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARM   95 (214)
Q Consensus        16 ~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n   95 (214)
                      ++|||||+||++ ..|.+||+|+..|.     .|||||||||+  |+|.+++++       .+++++.. .+.|.+.++|
T Consensus         1 ~isvii~~~Ne~-~~l~~~l~sl~~~~-----~eiivvD~gSt--D~t~~i~~~-------~~~~v~~~-~~~g~~~~~n   64 (229)
T cd02511           1 TLSVVIITKNEE-RNIERCLESVKWAV-----DEIIVVDSGST--DRTVEIAKE-------YGAKVYQR-WWDGFGAQRN   64 (229)
T ss_pred             CEEEEEEeCCcH-HHHHHHHHHHhccc-----CEEEEEeCCCC--ccHHHHHHH-------cCCEEEEC-CCCChHHHHH
Confidence            489999999999 99999999998774     39999999999  899998885       36777776 7899999999


Q ss_pred             hhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCC-EEEEeeeeeecC
Q psy1766          96 FGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTN-TVTVPIIDIINA  144 (214)
Q Consensus        96 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~-~vv~~~~~~~~~  144 (214)
                      .|++.|+++||+++|+|+.+++++++.+.+.+.+++. ....+......+
T Consensus        65 ~~~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  114 (229)
T cd02511          65 FALELATNDWVLSLDADERLTPELADEILALLATDDYDGYYVPRRNFFLG  114 (229)
T ss_pred             HHHHhCCCCEEEEEeCCcCcCHHHHHHHHHHHhCCCCcEEEEEEEEEEcC
Confidence            9999999999999999999999999999999877653 333444444333

UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.

>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine

Probab=99.82  E-value=1.8e-19  Score=139.03  Aligned_cols=115  Identities=20%  Similarity=0.284  Sum_probs=93.1

Q ss_pred             EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc---CCCcchHHHHH
Q psy1766          19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT---SKREGLIRARM   95 (214)
Q Consensus        19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~---~~~~G~~~a~n   95 (214)
                      ||||+||++ +.|.+||+|+.+|+ +.  +|||||||+|+  |.|.++++ +...  .+++++++.   ..+.|++.|+|
T Consensus         1 ViIp~~Ne~-~~l~~~l~sl~~~~-~~--~eIivvdd~S~--D~t~~~~~-~~~~--~~~v~~i~~~~~~~~~Gk~~aln   71 (191)
T cd06436           1 VLVPCLNEE-AVIQRTLASLLRNK-PN--FLVLVIDDASD--DDTAGIVR-LAIT--DSRVHLLRRHLPNARTGKGDALN   71 (191)
T ss_pred             CEEeccccH-HHHHHHHHHHHhCC-CC--eEEEEEECCCC--cCHHHHHh-heec--CCcEEEEeccCCcCCCCHHHHHH
Confidence            699999999 99999999999998 55  79999999999  89999988 3222  357888875   25789999999


Q ss_pred             hhhhhcC-----------CCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeee
Q psy1766          96 FGAKYAT-----------GKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDII  142 (214)
Q Consensus        96 ~g~~~a~-----------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~  142 (214)
                      .|++.++           +++|+++|+|+.++|++|+.+...+......++...+...
T Consensus        72 ~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~  129 (191)
T cd06436          72 AAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRVRMY  129 (191)
T ss_pred             HHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeEEEe
Confidence            9999875           3799999999999999999988777644334444444433

N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.

>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase

Probab=99.82  E-value=1.7e-19  Score=142.98  Aligned_cols=106  Identities=17%  Similarity=0.282  Sum_probs=87.8

Q ss_pred             EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhh
Q psy1766          19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGA   98 (214)
Q Consensus        19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~   98 (214)
                      +|||+||++++.|.+||+|+.+|   .  .|||||||+|+  +.+....+.   .  ..+++++..+.|.|.+.|+|.|+
T Consensus         1 ~vI~~yn~~~~~l~~~l~sl~~q---~--~~iivvDn~s~--~~~~~~~~~---~--~~~i~~i~~~~n~G~~~a~N~g~   68 (237)
T cd02526           1 AVVVTYNPDLSKLKELLAALAEQ---V--DKVVVVDNSSG--NDIELRLRL---N--SEKIELIHLGENLGIAKALNIGI   68 (237)
T ss_pred             CEEEEecCCHHHHHHHHHHHhcc---C--CEEEEEeCCCC--ccHHHHhhc---c--CCcEEEEECCCceehHHhhhHHH
Confidence            58999999889999999999998   2  59999999998  665544433   1  36899999899999999999999


Q ss_pred             hhcCC---CEEEEEcCCCccCcCchHHHH---HHHhcCCCEEEE
Q psy1766          99 KYATG---KVLVFLDSHIEVNTHWLEPLL---VPIAERTNTVTV  136 (214)
Q Consensus        99 ~~a~g---d~i~~lD~D~~~~~~~l~~l~---~~~~~~~~~vv~  136 (214)
                      +.|+|   +||+|+|+|+.++|+||+.++   ..+.+++..+++
T Consensus        69 ~~a~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~  112 (237)
T cd02526          69 KAALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAV  112 (237)
T ss_pred             HHHHhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEE
Confidence            99987   999999999999999999995   444445444443

Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.

>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.80  E-value=5.1e-19  Score=135.22  Aligned_cols=106  Identities=32%  Similarity=0.376  Sum_probs=95.4

Q ss_pred             CCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHH
Q psy1766          14 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRA   93 (214)
Q Consensus        14 ~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a   93 (214)
                      +|++|||||+||++ ..|.++|+|+.+|++.+  +|||||||||+  |+|.++++++....  ..+.......+.|.+.+
T Consensus         2 ~~~~siiip~~n~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~--d~t~~~~~~~~~~~--~~~~~~~~~~~~g~~~~   74 (291)
T COG0463           2 MPKVSVVIPTYNEE-EYLPEALESLLNQTYKD--FEIIVVDDGST--DGTTEIAIEYGAKD--VRVIRLINERNGGLGAA   74 (291)
T ss_pred             CccEEEEEeccchh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCC--CChHHHHHHHhhhc--ceEEEeecccCCChHHH
Confidence            68999999999999 99999999999999988  79999999999  89999999997753  45666666889999999


Q ss_pred             HHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHH
Q psy1766          94 RMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPI  127 (214)
Q Consensus        94 ~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~  127 (214)
                      +|.|+..+.++++.++|+|+. .+..+..+....
T Consensus        75 ~~~~~~~~~~~~~~~~d~d~~-~~~~~~~~~~~~  107 (291)
T COG0463          75 RNAGLEYARGDYIVFLDADDQ-HPPELIPLVAAG  107 (291)
T ss_pred             HHhhHHhccCCEEEEEccCCC-CCHHHHHHHHHh
Confidence            999999999999999999999 988888854444

>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional

Probab=99.80  E-value=6.1e-19  Score=160.43  Aligned_cols=116  Identities=13%  Similarity=0.121  Sum_probs=99.1

Q ss_pred             CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC-Ccch
Q psy1766          12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK-REGL   90 (214)
Q Consensus        12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~-~~G~   90 (214)
                      +..|+|||+||+|||+.+.+.+++.++++++|+...+||+|+||||+  |++.+.+++       .+++++..+. +.|+
T Consensus       257 ~~~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~--D~t~~la~~-------~~v~yI~R~~n~~gK  327 (852)
T PRK11498        257 SLWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGR--EEFRQFAQE-------VGVKYIARPTHEHAK  327 (852)
T ss_pred             CCCCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCC--hHHHHHHHH-------CCcEEEEeCCCCcch
Confidence            45689999999999984456789999999999976689999999999  888777666       3788887654 4568


Q ss_pred             HHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766          91 IRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus        91 ~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~  136 (214)
                      ++++|.|+++++||||+++|+|+.+.+++|++++..+.+++.+.++
T Consensus       328 AGnLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglV  373 (852)
T PRK11498        328 AGNINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMM  373 (852)
T ss_pred             HHHHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEE
Confidence            9999999999999999999999999999999999988766665544

>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming)

Probab=99.80  E-value=7.5e-19  Score=159.51  Aligned_cols=120  Identities=15%  Similarity=0.167  Sum_probs=101.1

Q ss_pred             CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCCh--------------HHHHHHHHhhcCCC
Q psy1766          12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL--------------HGEVETFVKGLNNG   77 (214)
Q Consensus        12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t--------------~~~~~~~~~~~~~~   77 (214)
                      +..|+|||+||+|||+.+.+.+++.++.+|+|+...+||+||||||+  |+|              .+.+++++++.   
T Consensus       128 ~~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgSt--D~t~~~~~~~~~~~~~~~~~~~~l~~~~---  202 (713)
T TIGR03030       128 EEWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGT--DQKRNDPDPEQAEAAQRREELKEFCRKL---  202 (713)
T ss_pred             ccCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCC--ccccccchhhhhhhhhhHHHHHHHHHHc---
Confidence            56789999999999993345679999999999965589999999999  765              35666776664   


Q ss_pred             cEEEEEcCCCc-chHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766          78 RVHLYRTSKRE-GLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus        78 ~v~~i~~~~~~-G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~  136 (214)
                      +++++..++|. ++++++|.|+++++|||++++|+|+.+.+++|++++..+.+++.+.++
T Consensus       203 ~v~yi~r~~n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~V  262 (713)
T TIGR03030       203 GVNYITRPRNVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLV  262 (713)
T ss_pred             CcEEEECCCCCCCChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEE
Confidence            88888876664 579999999999999999999999999999999999999777665444

Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.

>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ]

Probab=99.79  E-value=5.3e-19  Score=144.34  Aligned_cols=119  Identities=26%  Similarity=0.368  Sum_probs=92.4

Q ss_pred             EEEEEEeCCC-----chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC---Ccc
Q psy1766          18 SVIICFYNEH-----PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK---REG   89 (214)
Q Consensus        18 SVIIp~~n~~-----~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~---~~G   89 (214)
                      |||||++++.     .+.|..||.++..+..+.. +||||||+||+  +...+.++++..+.  ...+++....   ..|
T Consensus         1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~-~eiIvvd~~s~--~~~~~~l~~~~~~~--~~~~~i~~~~~~~~f~   75 (281)
T PF10111_consen    1 SIIIPVRNRSERPDILERLRNCLESLSQFQSDPD-FEIIVVDDGSS--DEFDEELKKLCEKN--GFIRYIRHEDNGEPFS   75 (281)
T ss_pred             CEEEEecCCccchHHHHHHHHHHHHHHhcCCCCC-EEEEEEECCCc--hhHHHHHHHHHhcc--CceEEEEcCCCCCCcC
Confidence            7999999988     1456777888877433322 89999999998  67778888887764  3343665543   359


Q ss_pred             hHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHH---HHhcCC-CEEEEeeeee
Q psy1766          90 LIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLV---PIAERT-NTVTVPIIDI  141 (214)
Q Consensus        90 ~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~---~~~~~~-~~vv~~~~~~  141 (214)
                      .+.|||.|++.|++++|+|+|+|+.++|++++.++.   .+.+++ ..++.|....
T Consensus        76 ~a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~yl  131 (281)
T PF10111_consen   76 RAKARNIGAKYARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCLYL  131 (281)
T ss_pred             HHHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeeeec
Confidence            999999999999999999999999999999999999   665554 5566665433

>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.78  E-value=3.5e-18  Score=147.22  Aligned_cols=121  Identities=29%  Similarity=0.324  Sum_probs=107.3

Q ss_pred             CCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc-CCCcchHH
Q psy1766          14 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT-SKREGLIR   92 (214)
Q Consensus        14 ~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~-~~~~G~~~   92 (214)
                      +|++||+||+|||+.+.+++++.++.+|+|+.  +||+||||+|+  |++.+++++...++ .++++++.. .++.|+++
T Consensus        53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~--~evivv~d~~~--d~~~~~~~~~~~~~-~~~~~~~~~~~~~~gK~~  127 (439)
T COG1215          53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPR--YEVIVVDDGST--DETYEILEELGAEY-GPNFRVIYPEKKNGGKAG  127 (439)
T ss_pred             CCceEEEEecCCCchhhHHHHHHHHHhCCCCC--ceEEEECCCCC--hhHHHHHHHHHhhc-CcceEEEeccccCccchH
Confidence            59999999999999339999999999999998  79999999999  89999999998886 346777643 57889999


Q ss_pred             HHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeee
Q psy1766          93 ARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPII  139 (214)
Q Consensus        93 a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~  139 (214)
                      |.|.|+..+++|+|+++|+|..+++++|.+++..+..++..+++...
T Consensus       128 al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~  174 (439)
T COG1215         128 ALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTP  174 (439)
T ss_pred             HHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCc
Confidence            99999999999999999999999999999999999887776555433

>TIGR01556 rhamnosyltran L-rhamnosyltransferase

Probab=99.77  E-value=3.1e-18  Score=139.62  Aligned_cols=106  Identities=14%  Similarity=0.161  Sum_probs=86.5

Q ss_pred             EEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhc
Q psy1766          22 CFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA  101 (214)
Q Consensus        22 p~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a  101 (214)
                      ++||++.+.|.+||+|+.+|.     ++||||||||+  +.  +.++.+..+.  +++++++.++|.|.+.|+|.|++.|
T Consensus         1 Vtyn~~~~~l~~~l~sl~~q~-----~~iiVVDN~S~--~~--~~~~~~~~~~--~~i~~i~~~~N~G~a~a~N~Gi~~a   69 (281)
T TIGR01556         1 VTFNPDLEHLGELITSLPKQV-----DRIIAVDNSPH--SD--QPLKNARLRG--QKIALIHLGDNQGIAGAQNQGLDAS   69 (281)
T ss_pred             CccCccHHHHHHHHHHHHhcC-----CEEEEEECcCC--Cc--HhHHHHhccC--CCeEEEECCCCcchHHHHHHHHHHH
Confidence            479985589999999999985     49999999997  33  2333333332  6899999999999999999999998


Q ss_pred             ---CCCEEEEEcCCCccCcCchHHHHHHHhcC--CCEEEEee
Q psy1766         102 ---TGKVLVFLDSHIEVNTHWLEPLLVPIAER--TNTVTVPI  138 (214)
Q Consensus       102 ---~gd~i~~lD~D~~~~~~~l~~l~~~~~~~--~~~vv~~~  138 (214)
                         .+|||++||+|+.+++++++.+++.+++.  ...++.|.
T Consensus        70 ~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~  111 (281)
T TIGR01556        70 FRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPR  111 (281)
T ss_pred             HHCCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCe
Confidence               68999999999999999999999998765  34445554

Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.

>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin

Probab=99.67  E-value=3.9e-16  Score=124.92  Aligned_cols=99  Identities=13%  Similarity=0.106  Sum_probs=79.3

Q ss_pred             EEEEEeCCCchHHHHHHHHHHhcCCC--------CCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcch
Q psy1766          19 VIICFYNEHPATLYRSVQTLLSRTGQ--------SLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGL   90 (214)
Q Consensus        19 VIIp~~n~~~~~l~~~l~sl~~q~~~--------~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~   90 (214)
                      ||||+|||+...|.++|+|+++|+|+        ...+|||||+|||+  |                        .|.|+
T Consensus         1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~--d------------------------~~~gk   54 (244)
T cd04190           1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAI--K------------------------KNRGK   54 (244)
T ss_pred             CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCcc--c------------------------ccCcc
Confidence            69999999626899999999999998        33489999999999  6                        12222


Q ss_pred             H-------HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCE-EEEeeeeeec
Q psy1766          91 I-------RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNT-VTVPIIDIIN  143 (214)
Q Consensus        91 ~-------~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~-vv~~~~~~~~  143 (214)
                      .       .+.|.|+..++||||+++|+|+.+++++|+.++..+..++.+ ++++.+...+
T Consensus        55 ~~~~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~  115 (244)
T cd04190          55 RDSQLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMG  115 (244)
T ss_pred             hHHHHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcC
Confidence            2       367888889999999999999999999999999999666554 4555544433

Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.

>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan

Probab=99.66  E-value=2.5e-15  Score=120.77  Aligned_cols=116  Identities=14%  Similarity=0.232  Sum_probs=88.5

Q ss_pred             eEEEEEEeCCCchHHHHHHHHHHh----cCC-CCCccEEEEEECCCCCCCChHH----HHHHHHhhcC-CCcEEEEEcCC
Q psy1766          17 TSVIICFYNEHPATLYRSVQTLLS----RTG-QSLLHEIILVNDFSEYPSNLHG----EVETFVKGLN-NGRVHLYRTSK   86 (214)
Q Consensus        17 vSVIIp~~n~~~~~l~~~l~sl~~----q~~-~~~~~eiivVdd~s~~~d~t~~----~~~~~~~~~~-~~~v~~i~~~~   86 (214)
                      +||+||+||++...|.++|.+..+    |.+ +.  +||+|+||+++  +....    .+.++.++++ ..++++++..+
T Consensus         1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~--~eI~vldD~~d--~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~   76 (254)
T cd04191           1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLADH--FDFFILSDTRD--PDIWLAEEAAWLDLCEELGAQGRIYYRRRRE   76 (254)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCc--eEEEEECCCCC--hHHHHHHHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            699999999994458999988775    665 44  89999999987  44321    2233444432 35788888887


Q ss_pred             Ccc-hHHHHHhhhhh--cCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766          87 REG-LIRARMFGAKY--ATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus        87 ~~G-~~~a~n~g~~~--a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~  136 (214)
                      +.| +++++|.++..  +++|||+++|+|..+.|++|.+++..+.+++.+.++
T Consensus        77 ~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~v  129 (254)
T cd04191          77 NTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGII  129 (254)
T ss_pred             CCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence            777 56777777765  788999999999999999999999999766655444

Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.

>PRK14716 bacteriophage N4 adsorption protein B; Provisional

Probab=99.66  E-value=2.2e-15  Score=131.15  Aligned_cols=120  Identities=14%  Similarity=0.134  Sum_probs=95.8

Q ss_pred             CCCCceEEEEEEeCCCchHHHHHHHHHH-hcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC--CCc
Q psy1766          12 STLPSTSVIICFYNEHPATLYRSVQTLL-SRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS--KRE   88 (214)
Q Consensus        12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~-~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~--~~~   88 (214)
                      ...|.++|+||+|||+ +.+.++|++++ ++.|++  +||+|++|+|+  |+|.+.++++..++  ++++++..+  ...
T Consensus        63 ~~~p~vaIlIPA~NE~-~vI~~~l~s~L~~ldY~~--~eIiVv~d~nd--d~T~~~v~~l~~~~--p~v~~vv~~~~gp~  135 (504)
T PRK14716         63 VPEKRIAIFVPAWREA-DVIGRMLEHNLATLDYEN--YRIFVGTYPND--PATLREVDRLAARY--PRVHLVIVPHDGPT  135 (504)
T ss_pred             CCCCceEEEEeccCch-hHHHHHHHHHHHcCCCCC--eEEEEEECCCC--hhHHHHHHHHHHHC--CCeEEEEeCCCCCC
Confidence            4578999999999999 99999999975 567876  79999999999  89999999998887  556654433  234


Q ss_pred             chHHHHHhhhhhc------CC---CEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeee
Q psy1766          89 GLIRARMFGAKYA------TG---KVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPII  139 (214)
Q Consensus        89 G~~~a~n~g~~~a------~g---d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~  139 (214)
                      |++.|.|.|++.+      +|   |+++++|+|+.++|++|+.+...+ .+.+.+.+|..
T Consensus       136 ~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~-~~~~~VQ~pv~  194 (504)
T PRK14716        136 SKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLL-PRHDFVQLPVF  194 (504)
T ss_pred             CHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhc-CCCCEEeccee
Confidence            6999999998654      55   999999999999999999876554 34444444443

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

Probab=99.60  E-value=3.6e-14  Score=103.36  Aligned_cols=106  Identities=33%  Similarity=0.426  Sum_probs=91.4

Q ss_pred             EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhh
Q psy1766          19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGA   98 (214)
Q Consensus        19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~   98 (214)
                      |+||++|+. +.+..++.++.+|.+..  +|++|+||+++  +.+.+.+.++....  ..+..+....+.|.+.++|.|+
T Consensus         1 iii~~~~~~-~~l~~~l~s~~~~~~~~--~~i~i~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~   73 (156)
T cd00761           1 VIIPAYNEE-PYLERCLESLLAQTYPN--FEVIVVDDGST--DGTLEILEEYAKKD--PRVIRVINEENQGLAAARNAGL   73 (156)
T ss_pred             CEEeecCcH-HHHHHHHHHHHhCCccc--eEEEEEeCCCC--ccHHHHHHHHHhcC--CCeEEEEecCCCChHHHHHHHH
Confidence            689999999 99999999999998755  79999999999  78888888876542  3566666788999999999999


Q ss_pred             hhcCCCEEEEEcCCCccCcCchHHHHHHHhcCC
Q psy1766          99 KYATGKVLVFLDSHIEVNTHWLEPLLVPIAERT  131 (214)
Q Consensus        99 ~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~  131 (214)
                      +.+.+++++++|+|..+.+++++.++..+..++
T Consensus        74 ~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~  106 (156)
T cd00761          74 KAARGEYILFLDADDLLLPDWLERLVAELLADP  106 (156)
T ss_pred             HHhcCCEEEEECCCCccCccHHHHHHHHHhcCC
Confidence            999999999999999999999999865554433

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als

>KOG2977|consensus

Probab=99.58  E-value=1.9e-14  Score=113.58  Aligned_cols=109  Identities=26%  Similarity=0.244  Sum_probs=86.3

Q ss_pred             ceEEEEEEeCCCchHHH----HHHHHHHhcCCC--CCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcc
Q psy1766          16 STSVIICFYNEHPATLY----RSVQTLLSRTGQ--SLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREG   89 (214)
Q Consensus        16 ~vSVIIp~~n~~~~~l~----~~l~sl~~q~~~--~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G   89 (214)
                      .+|||||+||++ ..+.    +|+..+......  +..+||+||||||+  |.|.+++-++..++....++++...+|.|
T Consensus        68 ~lsVIVpaynE~-~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~--d~T~~~a~k~s~K~~~d~irV~~l~~nrg  144 (323)
T KOG2977|consen   68 YLSVIVPAYNEE-GRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGST--DSTVEVALKFSRKLGDDNIRVIKLKKNRG  144 (323)
T ss_pred             eeEEEEecCCcc-cchHHHHHHHHHHHHHHhccCCCCceeEEEeCCCCc--hhHHHHHHHHHHHcCcceEEEeehhccCC
Confidence            799999999998 5544    455554433222  24589999999999  89999999999777668999999999999


Q ss_pred             hHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHH
Q psy1766          90 LIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPI  127 (214)
Q Consensus        90 ~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~  127 (214)
                      +++|...|+.+++|++++|.|+|..-.-.-++.+.+.+
T Consensus       145 KGgAvR~g~l~~rG~~ilfadAdGaTkf~d~ekLe~al  182 (323)
T KOG2977|consen  145 KGGAVRKGMLSSRGQKILFADADGATKFADLEKLEKAL  182 (323)
T ss_pred             CCcceehhhHhccCceEEEEcCCCCccCCCHHHHHHHH
Confidence            99999999999999999999999864333344444433

>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional

Probab=99.58  E-value=3.3e-14  Score=128.53  Aligned_cols=119  Identities=10%  Similarity=0.098  Sum_probs=97.8

Q ss_pred             CCCCceEEEEEEeCCCchHHHHHHHHHH-hcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC--Cc
Q psy1766          12 STLPSTSVIICFYNEHPATLYRSVQTLL-SRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK--RE   88 (214)
Q Consensus        12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~-~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~--~~   88 (214)
                      +..|.+||+||+|||+ ..+.+++++++ .++|++  +||++++++++  +.|.+.++++..++  ++++++....  +.
T Consensus        60 ~~~~~vsIlVPa~nE~-~vi~~~i~~ll~~ldYP~--~eI~vi~~~nD--~~T~~~~~~l~~~~--p~~~~v~~~~~g~~  132 (727)
T PRK11234         60 PDEKPLAIMVPAWNET-GVIGNMAELAATTLDYEN--YHIFVGTYPND--PATQADVDAVCARF--PNVHKVVCARPGPT  132 (727)
T ss_pred             CCCCCEEEEEecCcch-hhHHHHHHHHHHhCCCCC--eEEEEEecCCC--hhHHHHHHHHHHHC--CCcEEEEeCCCCCC
Confidence            4568999999999999 99999999987 689998  79999999887  78999999999887  5666554443  78


Q ss_pred             chHHHHHhhhhhc-------C--CCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEee
Q psy1766          89 GLIRARMFGAKYA-------T--GKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPI  138 (214)
Q Consensus        89 G~~~a~n~g~~~a-------~--gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~  138 (214)
                      |++.|.|.|+..+       +  .+.+++.|+|+.++|++|. ++..+......+-+|.
T Consensus       133 gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~~VQ~p~  190 (727)
T PRK11234        133 SKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERKDLIQIPV  190 (727)
T ss_pred             CHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCCCeEeecc
Confidence            9999999999987       3  3568889999999999998 5666655445555553

>PRK05454 glucosyltransferase MdoH; Provisional

Probab=99.52  E-value=2.8e-13  Score=121.98  Aligned_cols=123  Identities=15%  Similarity=0.200  Sum_probs=95.0

Q ss_pred             CCCCceEEEEEEeCCCc----hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHH----HHHHHhhcC-CCcEEEE
Q psy1766          12 STLPSTSVIICFYNEHP----ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGE----VETFVKGLN-NGRVHLY   82 (214)
Q Consensus        12 ~~~p~vSVIIp~~n~~~----~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~----~~~~~~~~~-~~~v~~i   82 (214)
                      ...|+++|+||+|||+.    ..|+.+++|+.+|.+.+. +|++|+||+++  +++...    +.++.++++ ..++.+.
T Consensus       121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~-~e~~vLdD~~d--~~~~~~e~~~~~~L~~~~~~~~~i~yr  197 (691)
T PRK05454        121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAH-FDFFILSDTRD--PDIAAAEEAAWLELRAELGGEGRIFYR  197 (691)
T ss_pred             CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCC-EEEEEEECCCC--hhHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            34678999999999983    358889999998887643 89999999998  665432    445555542 2478887


Q ss_pred             EcCCCcc-hHHHHHhhhhh--cCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEe
Q psy1766          83 RTSKREG-LIRARMFGAKY--ATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP  137 (214)
Q Consensus        83 ~~~~~~G-~~~a~n~g~~~--a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~  137 (214)
                      +...|.| ++++.|.+++.  +++||++++|+|..++++++.+++..++.++.+.++.
T Consensus       198 ~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQ  255 (691)
T PRK05454        198 RRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQ  255 (691)
T ss_pred             ECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEe
Confidence            7666665 66677777887  5679999999999999999999999998776655553

>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional

Probab=99.43  E-value=2.8e-12  Score=115.06  Aligned_cols=121  Identities=11%  Similarity=0.099  Sum_probs=94.5

Q ss_pred             CCCCceEEEEEEeCCCchHHHHHHHHHH-hcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC--Cc
Q psy1766          12 STLPSTSVIICFYNEHPATLYRSVQTLL-SRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK--RE   88 (214)
Q Consensus        12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~-~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~--~~   88 (214)
                      ...|.+||+||+|||+ +.+.+++++++ ++.|+.  +||+|+....+  .+|.+.++++..++  +.++++..+.  +.
T Consensus        68 ~~~~~vsIlVPa~nE~-~VI~~~v~~ll~~ldYp~--~~I~v~~~~nD--~~T~~~~~~~~~~~--p~~~~v~~~~~gp~  140 (703)
T PRK15489         68 RDEQPLAIMVPAWKEY-DVIAKMIENMLATLDYRR--YVIFVGTYPND--AETITEVERMRRRY--KRLVRVEVPHDGPT  140 (703)
T ss_pred             cCCCceEEEEeCCCcH-HHHHHHHHHHHhcCCCCC--eEEEEEecCCC--ccHHHHHHHHhccC--CcEEEEEcCCCCCC
Confidence            4567899999999999 99999999986 779987  79988643333  46788888887776  5777766543  47


Q ss_pred             chHHHHHhhhhhc-------CCCE--EEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeee
Q psy1766          89 GLIRARMFGAKYA-------TGKV--LVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIID  140 (214)
Q Consensus        89 G~~~a~n~g~~~a-------~gd~--i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~  140 (214)
                      |++.|+|.|+..+       .++|  |++.|+|+.++|+.|..+ ..+..+.+.+-.|+..
T Consensus       141 gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~~~~~iQ~pV~~  200 (703)
T PRK15489        141 CKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLPRKDLVQLPVLS  200 (703)
T ss_pred             CHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcCCcceeeeeecc
Confidence            8999999999875       3344  899999999999999876 5555556666666554

>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides

Probab=99.32  E-value=2.5e-11  Score=100.43  Aligned_cols=115  Identities=16%  Similarity=0.172  Sum_probs=88.1

Q ss_pred             eEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC----CC-----
Q psy1766          17 TSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS----KR-----   87 (214)
Q Consensus        17 vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~----~~-----   87 (214)
                      +.|||.+||+. ++|.++|+||++|.+....++|+|.+||+.  +++.+.++.+.     ..++++.+.    .+     
T Consensus         2 ~PVlv~ayNRp-~~l~r~LesLl~~~p~~~~~~liIs~DG~~--~~~~~~v~~~~-----~~i~~i~~~~~~~~~~~~~~   73 (334)
T cd02514           2 IPVLVIACNRP-DYLRRMLDSLLSYRPSAEKFPIIVSQDGGY--EEVADVAKSFG-----DGVTHIQHPPISIKNVNPPH   73 (334)
T ss_pred             cCEEEEecCCH-HHHHHHHHHHHhccccCCCceEEEEeCCCc--hHHHHHHHhhc-----cccEEEEcccccccccCccc
Confidence            57999999999 999999999999853333379999999998  66777777763     245555532    12     


Q ss_pred             -----cchHH----HHHhhhhhcCCCEEEEEcCCCccCcCch---HHHHHHHhcCCCEEEEeee
Q psy1766          88 -----EGLIR----ARMFGAKYATGKVLVFLDSHIEVNTHWL---EPLLVPIAERTNTVTVPII  139 (214)
Q Consensus        88 -----~G~~~----a~n~g~~~a~gd~i~~lD~D~~~~~~~l---~~l~~~~~~~~~~vv~~~~  139 (214)
                           .+.+.    |+|.++..++++++++|++|+.+.|+++   +.++..+++++.+.++...
T Consensus        74 ~~~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~  137 (334)
T cd02514          74 KFQGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAW  137 (334)
T ss_pred             ccchhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEee
Confidence                 22344    8888888889999999999999999955   6777777777777666554

Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.

>KOG2547|consensus

Probab=98.94  E-value=2.4e-08  Score=82.15  Aligned_cols=121  Identities=18%  Similarity=0.221  Sum_probs=105.8

Q ss_pred             CCCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcch
Q psy1766          11 PSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGL   90 (214)
Q Consensus        11 ~~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~   90 (214)
                      ..++|.||||.|...-. +.+...++|.+...|+.  +|++++-+.++  |...+.++++.++|+....+++...+..|.
T Consensus        81 ~~~LPgVSiikPl~G~d-~nl~~Nlesffts~Y~~--~ElLfcv~s~e--DpAi~vv~~Ll~kyp~VdAklf~gG~~vg~  155 (431)
T KOG2547|consen   81 DPKLPGVSIIKPLKGVD-PNLYHNLESFFTSQYHK--YELLFCVESSE--DPAIEVVERLLKKYPNVDAKLFFGGEKVGL  155 (431)
T ss_pred             CCCCCCceEEeecccCC-chhHHhHHHHHhhccCc--eEEEEEEccCC--CcHHHHHHHHHhhCCCcceEEEEccccccc
Confidence            34899999999999999 99999999999999986  89999999999  889999999999997777788887777775


Q ss_pred             HHHHH---hhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766          91 IRARM---FGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus        91 ~~a~n---~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~  136 (214)
                      ..-.|   -|.+.|+.|+|++.|+|..+.|+.+-.|...+.++...+.+
T Consensus       156 npKInN~mpgy~~a~ydlvlisDsgI~m~pdtildm~t~M~shekmalv  204 (431)
T KOG2547|consen  156 NPKINNMMPGYRAAKYDLVLISDSGIFMKPDTILDMATTMMSHEKMALV  204 (431)
T ss_pred             ChhhhccCHHHHHhcCCEEEEecCCeeecCchHHHHHHhhhcccceeee
Confidence            54444   48899999999999999999999999999999876666555

>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B

Probab=98.79  E-value=3.9e-08  Score=77.31  Aligned_cols=93  Identities=24%  Similarity=0.389  Sum_probs=67.0

Q ss_pred             eEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHh
Q psy1766          17 TSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMF   96 (214)
Q Consensus        17 vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~   96 (214)
                      ||||+++ |.+ ..+.+|+.+|.++..++  .|.|-|++-.                            ...+.+.+.|.
T Consensus         1 isiI~c~-n~~-~~~~~~~~~i~~~~~~~--~~~i~i~~~~----------------------------~~~s~~~~yN~   48 (217)
T PF13712_consen    1 ISIIICV-NDE-ELYEECLRSIKRLIGPP--GELIEIDNVR----------------------------NAKSMAAAYNE   48 (217)
T ss_dssp             EEEEEEE-S-H-HHHHHHHHHHHHTT--T--EEEEEEE-SS----------------------------S-S-TTTHHHH
T ss_pred             CEEEEEE-CCH-HHHHHHHHHHHhhCCCC--ceEEEEeccC----------------------------CCcCHHHHHHH
Confidence            5666655 555 78999999998887776  5777666532                            23578899999


Q ss_pred             hhhhcCCCEEEEEcCCCcc-CcCchHHHHHHHhcCCCEEEEeeeee
Q psy1766          97 GAKYATGKVLVFLDSHIEV-NTHWLEPLLVPIAERTNTVTVPIIDI  141 (214)
Q Consensus        97 g~~~a~gd~i~~lD~D~~~-~~~~l~~l~~~~~~~~~~vv~~~~~~  141 (214)
                      |++.|+++|++|+++|..+ .++|+..+++.+++++...++++...
T Consensus        49 a~~~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGvaG~   94 (217)
T PF13712_consen   49 AMEKAKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGVAGS   94 (217)
T ss_dssp             HGGG--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEESEEE
T ss_pred             HHHhCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEeecC
Confidence            9999999999999999997 68999999999988888776665544

>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2

Probab=98.32  E-value=5e-06  Score=56.72  Aligned_cols=82  Identities=16%  Similarity=0.009  Sum_probs=57.4

Q ss_pred             eCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcc---h-HHHHHhhhh
Q psy1766          24 YNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREG---L-IRARMFGAK   99 (214)
Q Consensus        24 ~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G---~-~~a~n~g~~   99 (214)
                      +|++ ..|.+.|....+...    ..++|+||||+  |+|.++++++      +.+.++.......   . ...++..++
T Consensus         1 rne~-~~L~~wl~~~~~lG~----d~i~i~d~~s~--D~t~~~l~~~------~~v~i~~~~~~~~~~~~~~~~~~~~~~   67 (97)
T PF13704_consen    1 RNEA-DYLPEWLAHHLALGV----DHIYIYDDGST--DGTREILRAL------PGVGIIRWVDPYRDERRQRAWRNALIE   67 (97)
T ss_pred             CChH-HHHHHHHHHHHHcCC----CEEEEEECCCC--ccHHHHHHhC------CCcEEEEeCCCccchHHHHHHHHHHHH
Confidence            5788 899999998865543    38999999999  8999999886      3455655433222   1 223333333


Q ss_pred             h-cCCCEEEEEcCCCccCcC
Q psy1766         100 Y-ATGKVLVFLDSHIEVNTH  118 (214)
Q Consensus       100 ~-a~gd~i~~lD~D~~~~~~  118 (214)
                      . ..++|++++|+|..+.+.
T Consensus        68 ~~~~~dWvl~~D~DEfl~~~   87 (97)
T PF13704_consen   68 RAFDADWVLFLDADEFLVPP   87 (97)
T ss_pred             hCCCCCEEEEEeeeEEEecC
Confidence            3 478999999999987543

>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function

Probab=98.22  E-value=4.2e-05  Score=61.46  Aligned_cols=125  Identities=23%  Similarity=0.223  Sum_probs=87.2

Q ss_pred             CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEE-EEEECCCCCCCChHHHHHHHHhhcCC--------CcEEEE
Q psy1766          12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEI-ILVNDFSEYPSNLHGEVETFVKGLNN--------GRVHLY   82 (214)
Q Consensus        12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~ei-ivVdd~s~~~d~t~~~~~~~~~~~~~--------~~v~~i   82 (214)
                      .+.+.|-|++|..|.+ .++..-+..|...+|+.....+ ++|.|.+.- |.+.+.+++...+.+.        ..|.++
T Consensus        22 ~~~e~VLILtplrna~-~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~-d~t~~~l~~~~~~~q~~~~~~~~F~~itIl   99 (269)
T PF03452_consen   22 RNKESVLILTPLRNAA-SFLPDYFDNLLSLTYPHELISLGFLVSDSSEF-DNTLKILEAALKKLQSHGPESKRFRSITIL   99 (269)
T ss_pred             ccCCeEEEEEecCCch-HHHHHHHHHHHhCCCCchheEEEEEcCCCchh-HHHHHHHHHHHHHHhccCcccCCcceEEEE
Confidence            5667899999999999 9999999999999999976677 566666643 5677777755443211        356666


Q ss_pred             EcCCC--------------------cchHHHHHhhhhhc---CCCEEEEEcCCCcc-CcCchHHHHHHHhcCCCEEEEee
Q psy1766          83 RTSKR--------------------EGLIRARMFGAKYA---TGKVLVFLDSHIEV-NTHWLEPLLVPIAERTNTVTVPI  138 (214)
Q Consensus        83 ~~~~~--------------------~G~~~a~n~g~~~a---~gd~i~~lD~D~~~-~~~~l~~l~~~~~~~~~~vv~~~  138 (214)
                      +.+..                    .-.+.|||..+..+   ..+||+++|+|..- +++.|+.|+.    ....+++|.
T Consensus       100 ~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~----~~kdIivPn  175 (269)
T PF03452_consen  100 RKDFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLIA----HDKDIIVPN  175 (269)
T ss_pred             cCCCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHHh----CCCCEEccc
Confidence            54221                    12478889888777   45899999999985 5565555543    344455565


Q ss_pred             eeee
Q psy1766         139 IDII  142 (214)
Q Consensus       139 ~~~~  142 (214)
                      +-..
T Consensus       176 ~~~~  179 (269)
T PF03452_consen  176 CWRR  179 (269)
T ss_pred             eeec
Confidence            5443

These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].

>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=98.06  E-value=1.8e-05  Score=67.58  Aligned_cols=120  Identities=13%  Similarity=0.214  Sum_probs=69.4

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-------
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-------   85 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-------   85 (214)
                      ..+.+-|+|.++|+. .+|.+||++|++..+....+.|||..||+.  ..+.+.++.+..     .+++++..       
T Consensus        91 ~~~~~pVlV~AcNRp-~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~--~~~~~vi~~y~~-----~v~~i~~~~~~~i~~  162 (434)
T PF03071_consen   91 KEPVIPVLVFACNRP-DYLRRTLDSLLKYRPSAEKFPIIVSQDGDD--EEVAEVIKSYGD-----QVTYIQHPDFSPITI  162 (434)
T ss_dssp             ------EEEEESS-T-T-HHHHHHHHHHH-S-TTTS-EEEEE-TT---HHHHHHHHGGGG-----GSEEEE-S--S----
T ss_pred             CCCcceEEEEecCCc-HHHHHHHHHHHHcCCCCCCccEEEEecCCc--HHHHHHHHHhhh-----hheeeecCCcCCcee
Confidence            456788999999999 999999999998765554578999999987  677777777643     23333321       


Q ss_pred             --CC------cchHHHHHhhhhh----cCCCEEEEEcCCCccCcCchHHHHH---HHhcCCCEEEEeeee
Q psy1766          86 --KR------EGLIRARMFGAKY----ATGKVLVFLDSHIEVNTHWLEPLLV---PIAERTNTVTVPIID  140 (214)
Q Consensus        86 --~~------~G~~~a~n~g~~~----a~gd~i~~lD~D~~~~~~~l~~l~~---~~~~~~~~vv~~~~~  140 (214)
                        ..      .+.+.-.-.|+..    -..+.++++.+|..+.|++++-+.+   .+++++.+-++....
T Consensus       163 ~~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSawN  232 (434)
T PF03071_consen  163 PPKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAWN  232 (434)
T ss_dssp             -TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES--
T ss_pred             CcccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEccc
Confidence              11      1123322333333    2568899999999999999876554   456777776665543

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.

>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=97.92  E-value=9.6e-05  Score=58.71  Aligned_cols=121  Identities=12%  Similarity=0.164  Sum_probs=75.8

Q ss_pred             CCceEEEEEEeCCC-chHH-HHHHH--HHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCC--
Q psy1766          14 LPSTSVIICFYNEH-PATL-YRSVQ--TLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKR--   87 (214)
Q Consensus        14 ~p~vSVIIp~~n~~-~~~l-~~~l~--sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~--   87 (214)
                      |+++++|||.--.. .+.. .+.+.  +++.--.+....+||++++.+.    ....++.+....  +++.++.....  
T Consensus         1 m~~~~~iiPv~~S~e~p~~~~R~f~~~~~~k~fts~~~~~vi~~~~~~~----~d~~i~~~i~~~--~~~~yl~~~s~~~   74 (346)
T COG4092           1 MQPNGEIIPVAESEELPLTDSRQFSRTSAVKVFTSSDITMVICLRAHEV----MDRLIRSYIDPM--PRVLYLDFGSPEP   74 (346)
T ss_pred             CCCcceEeecchhhccchhHHHHHhhHhhhhhccccccEEEEEEecchh----HHHHHHHHhccc--cceEEEecCCCcc
Confidence            67899999997543 1222 22222  2122112223378888888775    336677776664  67777764322  


Q ss_pred             -cchHHHHHhhhhhcC----CCEEEEEcCCCccCcCchHHHHHHH-----hcCC-CEEEEeeee
Q psy1766          88 -EGLIRARMFGAKYAT----GKVLVFLDSHIEVNTHWLEPLLVPI-----AERT-NTVTVPIID  140 (214)
Q Consensus        88 -~G~~~a~n~g~~~a~----gd~i~~lD~D~~~~~~~l~~l~~~~-----~~~~-~~vv~~~~~  140 (214)
                       ...+.++|.|+.++.    +++|+|+|.|+..+.+-.++++..+     ..+- +..+.|+.-
T Consensus        75 F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~~ikk~~tnI~a~~vlPV~~  138 (346)
T COG4092          75 FASETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIATIKKMRTNIDAPLVLPVYH  138 (346)
T ss_pred             ccchhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHHHHHHHHHhccCcceeeeeee
Confidence             234789999998885    8999999999999966666666443     2332 344555543

>KOG3588|consensus

Probab=97.90  E-value=0.00031  Score=58.33  Aligned_cols=124  Identities=17%  Similarity=0.161  Sum_probs=88.5

Q ss_pred             CCCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCCh--HHHHHHHHhhcCCCcEEEEEcCCCc
Q psy1766          11 PSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL--HGEVETFVKGLNNGRVHLYRTSKRE   88 (214)
Q Consensus        11 ~~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t--~~~~~~~~~~~~~~~v~~i~~~~~~   88 (214)
                      +-+.|.|.+|+|...+. ..+.+...++.......  .+++||-=|++. ++-  .+.+..++.++  .++.++.....+
T Consensus       225 ~i~~pgih~i~pl~gr~-~~f~rf~q~~c~~~d~~--l~l~vv~f~~se-~e~ak~e~~tslra~f--~~~q~l~lngeF  298 (494)
T KOG3588|consen  225 LIEDPGIHMIMPLRGRA-AIFARFAQSICARGDDR--LALSVVYFGYSE-DEMAKRETITSLRASF--IPVQFLGLNGEF  298 (494)
T ss_pred             cccCCCceEEEeccchH-HHhhhhhHHHhccCCCc--eEEEEEEecCCC-hHHHhhhHHHHHhhcC--CceEEecccchh
Confidence            45678899999999998 88888888887666555  466666544432 332  23555777776  777888777778


Q ss_pred             chHHHHHhhhhhcCCCEE-EEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeee
Q psy1766          89 GLIRARMFGAKYATGKVL-VFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDI  141 (214)
Q Consensus        89 G~~~a~n~g~~~a~gd~i-~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~  141 (214)
                      ..+.|+..|.+.-+.+.+ .|+|.|..++.++|.+.-.-.. ...-+-.|++-.
T Consensus       299 SRa~aL~vGAe~~~~nvLLFfcDVDi~FT~efL~rcr~Nt~-~gkqiyfPivFS  351 (494)
T KOG3588|consen  299 SRAKALMVGAETLNANVLLFFCDVDIYFTTEFLNRCRLNTI-LGKQIYFPIVFS  351 (494)
T ss_pred             hhhHHHHhhHHHhccceeEEEeccceeehHHHHHHHhhccC-CCceEEEEEEEe
Confidence            899999999999877655 5679999999999988644332 234455565443

>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2

Probab=97.80  E-value=0.00094  Score=58.88  Aligned_cols=125  Identities=10%  Similarity=0.105  Sum_probs=81.7

Q ss_pred             ceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECC----CCCCCChHHHHHHHHhh------------------
Q psy1766          16 STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDF----SEYPSNLHGEVETFVKG------------------   73 (214)
Q Consensus        16 ~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~----s~~~d~t~~~~~~~~~~------------------   73 (214)
                      .+-..||+|||..+.|+++|+|+..+.|++..--|+||-||    +...-.|.+++-.....                  
T Consensus        26 ~~i~~v~cy~E~~~~l~~tldsl~~~~y~~~~k~~~vi~DG~i~g~g~~~~tp~~~l~~~~~~~~~~~~~~~~~~~~~~~  105 (527)
T PF03142_consen   26 FVICLVPCYSEGEEELRTTLDSLATTDYDDSRKLIFVICDGMIKGSGNDKTTPEIVLDILGDFVDPPEDPEPLSYVSLGE  105 (527)
T ss_pred             eEEEEEccccCChHHHHHHHHHHHhcCCCCcccEEEEEcCcEEecCCCCCChHHHHHHhhcccCCCcCCCCCcceEEecc
Confidence            45568999999889999999999999998765556666664    22113467776665551                  


Q ss_pred             ----------------cCC------------CcEEEEE----------cCCCcchHHHHHh-------------------
Q psy1766          74 ----------------LNN------------GRVHLYR----------TSKREGLIRARMF-------------------   96 (214)
Q Consensus        74 ----------------~~~------------~~v~~i~----------~~~~~G~~~a~n~-------------------   96 (214)
                                      +.+            |-+.++.          .+.|.|+--..-.                   
T Consensus       106 g~~~~n~~~vy~g~y~~~~~~~~~~~~~~~vp~~~vvk~g~~~e~~~~k~~NrGKRDsq~~~~~fl~~~~~~~~~~~~~~  185 (527)
T PF03142_consen  106 GSKQHNMAKVYSGFYEYDGDSHVPPEKQQRVPYIVVVKCGTPSERSSPKPGNRGKRDSQILLMSFLNKVHFNNPMTPLEL  185 (527)
T ss_pred             CchhhcCEEEEEEEEecCCccccccccccccCEEEEEEcCChHHhcccccccCCchHHHHHHHHHHHHHhcCCCCchHHH
Confidence                            001            1122233          2456664221111                   


Q ss_pred             ----------hhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCE-EEEeeee
Q psy1766          97 ----------GAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNT-VTVPIID  140 (214)
Q Consensus        97 ----------g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~-vv~~~~~  140 (214)
                                |+.....+|++.+|+|+.+.|+.+.+|+..+.+++.+ .+|+...
T Consensus       186 e~~~~i~~~~g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t~  240 (527)
T PF03142_consen  186 ELFHQIWNIIGVDPDFYEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGETR  240 (527)
T ss_pred             HHHHHHHHHhccCccceEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEeceeE
Confidence                      2222245899999999999999999999999766654 5565433

4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups

>PF13506 Glyco_transf_21: Glycosyl transferase family 21

Probab=97.71  E-value=0.00016  Score=55.02  Aligned_cols=57  Identities=25%  Similarity=0.300  Sum_probs=45.1

Q ss_pred             EEEEcCCCcc---hHHHHHhhhhh-cCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766          80 HLYRTSKREG---LIRARMFGAKY-ATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus        80 ~~i~~~~~~G---~~~a~n~g~~~-a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~  136 (214)
                      +++..+...|   +..++..|+++ +++|+++++|+|..++|++|..++..+.+....+++
T Consensus         5 ~lvv~~~~~g~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt   65 (175)
T PF13506_consen    5 RLVVGGPPRGCNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVT   65 (175)
T ss_pred             EEEECCCCCCCChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEE
Confidence            3555444444   66677788898 999999999999999999999999999875554444

>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis

Probab=97.56  E-value=0.0011  Score=54.98  Aligned_cols=104  Identities=15%  Similarity=0.187  Sum_probs=56.6

Q ss_pred             CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCCh----HHHHHHHHhhcCCCcEEEEEcC-----
Q psy1766          15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL----HGEVETFVKGLNNGRVHLYRTS-----   85 (214)
Q Consensus        15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t----~~~~~~~~~~~~~~~v~~i~~~-----   85 (214)
                      .+.+||||+.||.+.    .|+.++...+.+  +-||||-|++..|.+-    .+.++.+...- ...+-++++.     
T Consensus        50 ~~maIVVP~KnE~l~----lleGVL~gIPh~--C~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t-~r~~~~vHQkDp~lA  122 (381)
T PF09488_consen   50 SKMAIVVPCKNEKLK----LLEGVLSGIPHD--CLIIVVSNSSREPVDRFKMEVDLLKHFCRLT-RRQIIIVHQKDPGLA  122 (381)
T ss_dssp             TTEEEEEEESS--HH----HHHHHHHCS-TT--SEEEEEE---CSSSCHHHHHHHHHHHHHHHC-T--EEEEETT-HHHH
T ss_pred             hCcEEEEECCCCchh----hhhhhhhcCCCC--CeEEEEECCCCCCccHHHHHHHHHHHHHHhh-cCceEEEecCCHHHH
Confidence            468999999999943    444555555655  6899999988731121    33455555432 2456666632     


Q ss_pred             -----------------CCcchHHHHHhhhhhc---CCCEEEEEcCCCccCcCchHHHHHH
Q psy1766          86 -----------------KREGLIRARMFGAKYA---TGKVLVFLDSHIEVNTHWLEPLLVP  126 (214)
Q Consensus        86 -----------------~~~G~~~a~n~g~~~a---~gd~i~~lD~D~~~~~~~l~~l~~~  126 (214)
                                       -+-|++.++-.|+..|   ..+||-|+|+|..++- .+.+.+..
T Consensus       123 ~Af~~aGy~~il~~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDADNyiPG-aV~EYvk~  182 (381)
T PF09488_consen  123 EAFKEAGYPEILDEDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDADNYIPG-AVNEYVKD  182 (381)
T ss_dssp             HHHHHTT--TTB-TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS-HH-HHHHHHHH
T ss_pred             HHHHHcCcHHHhCCCCceecCchHHHHHHHHHHHhcCCceEeEeeccCCCcc-hHHHHHHH
Confidence                             1246777777777555   4699999999987653 34444443

Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.

>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni []

Probab=97.40  E-value=0.0013  Score=53.72  Aligned_cols=118  Identities=14%  Similarity=0.109  Sum_probs=87.7

Q ss_pred             ceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEE-------cCC--
Q psy1766          16 STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYR-------TSK--   86 (214)
Q Consensus        16 ~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~-------~~~--   86 (214)
                      .++..|-+.||+ ..|.++|+|++...     .|.||.=|.|+  |+|.+++.+++.++++ -+.+..       +++  
T Consensus        88 ~~~~~iRvKnE~-~tl~~si~S~Lpai-----~~gVI~yNdc~--D~t~Eiil~fckkyP~-fip~~Ypy~v~~~n~~~~  158 (347)
T PF06306_consen   88 NPWAFIRVKNEA-MTLAESIESILPAI-----DEGVIGYNDCT--DGTEEIILEFCKKYPS-FIPIKYPYEVIIKNPKSE  158 (347)
T ss_pred             CcceEEEEcchh-hhHHHHHHHHHHHH-----hccEEEeecCC--CCHHHHHHHHHHhCcc-cccccCcchhhccCCchh
Confidence            589999999999 99999999998654     48888888888  8999999999999832 222211       111  


Q ss_pred             CcchHHHHHhhhhhc-CCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeee
Q psy1766          87 REGLIRARMFGAKYA-TGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDII  142 (214)
Q Consensus        87 ~~G~~~a~n~g~~~a-~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~  142 (214)
                      .-....-.|.++... +.+|++=+|+|-...+.-|-...-...+..+++..+.++..
T Consensus       159 ~n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksfY~pk~~~~~v~YsRINF~  215 (347)
T PF06306_consen  159 ENSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSFYIPKNDYDVVSYSRINFH  215 (347)
T ss_pred             hhhhhhhhhhhhcccccceEEEEeccceeecHHHHhhhheeeccccceEEecceeEE
Confidence            112344566677664 68999999999999887765544444677788888888864

>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]

Probab=97.38  E-value=0.0019  Score=56.27  Aligned_cols=121  Identities=15%  Similarity=0.206  Sum_probs=74.4

Q ss_pred             ceEEEEEEeCCC----chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHH---HHHHHhhcC-CCcEEEEEcCCC
Q psy1766          16 STSVIICFYNEH----PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGE---VETFVKGLN-NGRVHLYRTSKR   87 (214)
Q Consensus        16 ~vSVIIp~~n~~----~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~---~~~~~~~~~-~~~v~~i~~~~~   87 (214)
                      ...|++|+|||.    ...|+.+-+|+.+. .....|++.|+-|..+. |-....   ...++.+.+ ..+|-|-+..+|
T Consensus       145 rTAilmPiynEd~~rVfAgLrA~~eSla~T-g~~~~FD~FVLSDs~dp-dialAEq~a~~~l~~e~~g~~~ifYRrRr~n  222 (736)
T COG2943         145 RTAILMPIYNEDVNRVFAGLRATYESLAAT-GHAEHFDFFVLSDSRDP-DIALAEQKAWAELCRELGGEGNIFYRRRRRN  222 (736)
T ss_pred             ceeEEeeccccCHHHHHHHHHHHHHHHHhh-CCcccceEEEEcCCCCc-hhhhhHHHHHHHHHHHhCCCCceeeehHhhh
Confidence            589999999998    34555666666543 33333888888887651 222111   122333331 145555444444


Q ss_pred             cchHHHHHhh--hhh--cCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeee
Q psy1766          88 EGLIRARMFG--AKY--ATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPII  139 (214)
Q Consensus        88 ~G~~~a~n~g--~~~--a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~  139 (214)
                      .+.- +=|.+  .+.  ..++|.+++|+|.....+.+.++++.++.+++..+....
T Consensus       223 ~~RK-aGNIaDfcrRwG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P~aGlIQt~  277 (736)
T COG2943         223 VKRK-AGNIADFCRRWGSAYSYMLVLDADSVMTGDCLVRLVRLMEANPDAGLIQTS  277 (736)
T ss_pred             hccc-ccCHHHHHHHhCcccceEEEeecccccCchHHHHHHHHHhhCCCCceeecc
Confidence            4321 11111  111  246899999999999999999999999999887665443

>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional

Probab=97.35  E-value=0.003  Score=52.50  Aligned_cols=104  Identities=14%  Similarity=0.167  Sum_probs=62.9

Q ss_pred             CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCCh----HHHHHHHHhhcCCCcEEEEEcCCC---
Q psy1766          15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL----HGEVETFVKGLNNGRVHLYRTSKR---   87 (214)
Q Consensus        15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t----~~~~~~~~~~~~~~~v~~i~~~~~---   87 (214)
                      -+..||||+.||.+..    |+.++...+.+  +-||||-|++..|.+.    .+.++.+..-- ...+-++++ ++   
T Consensus        51 ~~mAIVVP~KdE~l~l----leGVL~gIPh~--c~iIvVSNS~r~~~d~f~~E~dlv~~f~~~t-~r~~i~vHQ-kDp~l  122 (393)
T PRK14503         51 GRMAIVVPVKNERLKL----LEGVLKGIPHE--CPIIVVSNSKREPPDRFKLEVDLVRHFYRLT-QRPIIIVHQ-KDPGL  122 (393)
T ss_pred             hCcEEEEEcCCCchhH----HhhHhhcCCCC--CeEEEEeCCCCCCchHHHHHHHHHHHHHhhh-cCceEEEEc-CCHHH
Confidence            3689999999999544    44444444555  6888888886521111    22344444321 235555553 23   


Q ss_pred             --------------------cchHHHHHhhhhhc---CCCEEEEEcCCCccCcCchHHHHHHH
Q psy1766          88 --------------------EGLIRARMFGAKYA---TGKVLVFLDSHIEVNTHWLEPLLVPI  127 (214)
Q Consensus        88 --------------------~G~~~a~n~g~~~a---~gd~i~~lD~D~~~~~~~l~~l~~~~  127 (214)
                                          -|++.++-.|+..|   ..+||-|+|+|..++- .+.+.+..+
T Consensus       123 a~Af~~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiPG-aV~EYvk~y  184 (393)
T PRK14503        123 AEALKEAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYIPG-AVNEYVKIY  184 (393)
T ss_pred             HHHHHHcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCCCc-hHHHHHHHH
Confidence                                35666666666554   4599999999998754 344444444

>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase

Probab=97.35  E-value=0.0032  Score=52.07  Aligned_cols=104  Identities=15%  Similarity=0.184  Sum_probs=63.3

Q ss_pred             CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCCh----HHHHHHHHhhcCCCcEEEEEcCCC---
Q psy1766          15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL----HGEVETFVKGLNNGRVHLYRTSKR---   87 (214)
Q Consensus        15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t----~~~~~~~~~~~~~~~v~~i~~~~~---   87 (214)
                      -+..||||+.||.+..    |+.++...+.+  +-||||-|++..|.+.    .+.++.+..-. ...+-++++ ++   
T Consensus        50 ~~maIVVP~KdE~l~l----leGVL~gIPh~--c~iIvVSNS~r~~~d~f~~E~d~~~~f~~~t-~r~~i~vHQ-kDp~l  121 (381)
T TIGR02460        50 GKTAIVVPVKNEKLHL----LEGVLSGIPHE--CPIIIVSNSKREPPDRFKMEVDLIRHFSNLT-HRKIIIIHQ-KDPAL  121 (381)
T ss_pred             hCcEEEEEcCCCchhH----HhhHhhcCCCC--CeEEEEeCCCCCChhHHHHHHHHHHHHHHhh-cCceEEEEc-CCHHH
Confidence            3689999999999544    44444444555  6888888887621111    22344444321 235555553 22   


Q ss_pred             --------------------cchHHHHHhhhhhc---CCCEEEEEcCCCccCcCchHHHHHHH
Q psy1766          88 --------------------EGLIRARMFGAKYA---TGKVLVFLDSHIEVNTHWLEPLLVPI  127 (214)
Q Consensus        88 --------------------~G~~~a~n~g~~~a---~gd~i~~lD~D~~~~~~~l~~l~~~~  127 (214)
                                          -|++.++-.|+..|   ..+||-|+|+|..++- .+.+.+..+
T Consensus       122 a~Af~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiPG-aV~EYvk~y  183 (381)
T TIGR02460       122 AEAFKEVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYFPG-AVNEYVKIY  183 (381)
T ss_pred             HHHHHHcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCCCc-hHHHHHHHH
Confidence                                35666666676555   4599999999998754 344444444

This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.

>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase

Probab=97.34  E-value=0.0052  Score=54.35  Aligned_cols=125  Identities=14%  Similarity=0.131  Sum_probs=86.2

Q ss_pred             CCCCceEEEEEEeCC-CchHHHHHHHHHHh---cCCCCCccEEEEEECCC-CCCCC---hHHHHHHHHhhcCCCcEEEEE
Q psy1766          12 STLPSTSVIICFYNE-HPATLYRSVQTLLS---RTGQSLLHEIILVNDFS-EYPSN---LHGEVETFVKGLNNGRVHLYR   83 (214)
Q Consensus        12 ~~~p~vSVIIp~~n~-~~~~l~~~l~sl~~---q~~~~~~~eiivVdd~s-~~~d~---t~~~~~~~~~~~~~~~v~~i~   83 (214)
                      .+-..|.||||..++ . +.+.+-|+...+   ++...  ..++||..++ .+.+.   +.+.++++..+++..++.++.
T Consensus       244 ~~~~~V~iIvPl~~r~~-~~~~~Fl~~~~~~~l~~~~~--~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~  320 (499)
T PF05679_consen  244 TESTRVHIIVPLSGREA-DWFRRFLENFEKVCLETDDN--VFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWIS  320 (499)
T ss_pred             cCCCEEEEEEEecCccH-HHHHHHHHHHHHHhcccCCc--eEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEE
Confidence            344689999999999 5 666665555432   33322  3555555544 31011   234777888887667899999


Q ss_pred             cC-CCcchHHHHHhhhhhcC-CCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeee
Q psy1766          84 TS-KREGLIRARMFGAKYAT-GKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIID  140 (214)
Q Consensus        84 ~~-~~~G~~~a~n~g~~~a~-gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~  140 (214)
                      .. .++..+.|+..|++... .++++|+|.|..+++++|.+.-.....+ .-|-.|++-
T Consensus       321 ~~~~~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~g-~qvy~PI~F  378 (499)
T PF05679_consen  321 VKTGEFSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNTIPG-KQVYFPIVF  378 (499)
T ss_pred             ecCCCccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhhhcC-cEEEEeeec
Confidence            87 88899999999998664 5678888999999999999986655433 345556543

Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane

>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function

Probab=97.30  E-value=0.0028  Score=50.35  Aligned_cols=89  Identities=11%  Similarity=0.088  Sum_probs=64.0

Q ss_pred             HHHHHHHhcCCCCCccEEEEE-ECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhc---CCCEEE-
Q psy1766          33 RSVQTLLSRTGQSLLHEIILV-NDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA---TGKVLV-  107 (214)
Q Consensus        33 ~~l~sl~~q~~~~~~~eiivV-dd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a---~gd~i~-  107 (214)
                      -||.||.+|+.++  |.++|+ ++...  +...+.++++.+.+  +.++++..+. .....+...+++.+   .+++++ 
T Consensus        46 ~~LpSl~~QTd~d--F~~lv~~~~~~P--~~~~~rL~~l~~~~--p~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  118 (234)
T PF11316_consen   46 YCLPSLRAQTDQD--FTWLVLFDDDLP--EPYRERLRDLLADY--PQFRIVFRPP-GPHRDAMRRAINAARRDGADPVLQ  118 (234)
T ss_pred             HHhhHHHhccCCC--eEEEEEECCCCC--HHHHHHHHHHhccC--CCcEEEecCC-chHHHHHHHHHhhhccCCCCEEEE
Confidence            3899999999998  788875 44554  66788888988876  5676766443 33455555555332   456554 


Q ss_pred             -EEcCCCccCcCchHHHHHHHh
Q psy1766         108 -FLDSHIEVNTHWLEPLLVPIA  128 (214)
Q Consensus       108 -~lD~D~~~~~~~l~~l~~~~~  128 (214)
                       -+|+|+.+..++++.+.+...
T Consensus       119 ~RLDdDDAl~~dFV~rlr~~a~  140 (234)
T PF11316_consen  119 FRLDDDDALHRDFVARLRRAAA  140 (234)
T ss_pred             EEECCcchhhHHHHHHHHHHHH
Confidence             469999999999999998873

>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

Probab=97.10  E-value=0.0036  Score=49.00  Aligned_cols=99  Identities=17%  Similarity=0.172  Sum_probs=63.7

Q ss_pred             CceEEEEEEeCCC--chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc--CCC---
Q psy1766          15 PSTSVIICFYNEH--PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT--SKR---   87 (214)
Q Consensus        15 p~vSVIIp~~n~~--~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~--~~~---   87 (214)
                      |.|-||.|+|.+.  ...|.+.-+.|.. .. +  .-.|||+|+....+.+.+++++       .++.+.+.  +.+   
T Consensus         1 p~i~vVTPTy~R~~Q~~~LtRLa~TL~l-Vp-~--l~WIVVEd~~~~t~~va~lL~~-------sgl~y~HL~~~~~~~~   69 (223)
T cd00218           1 PTIYVVTPTYARPVQKAELTRLAHTLRL-VP-P--LHWIVVEDSEEKTPLVAELLRR-------SGLMYTHLNAKTPSDP   69 (223)
T ss_pred             CeEEEECCCCccchhhHHHHHHHHHHhc-CC-c--eEEEEEeCCCCCCHHHHHHHHH-------cCCceEEeccCCCCCc
Confidence            4678999999987  3455555555433 33 4  5999999998311344444444       24444333  222   


Q ss_pred             ----cchHHHHHhhhhhcC-------CCEEEEEcCCCccCcCchHHHH
Q psy1766          88 ----EGLIRARMFGAKYAT-------GKVLVFLDSHIEVNTHWLEPLL  124 (214)
Q Consensus        88 ----~G~~~a~n~g~~~a~-------gd~i~~lD~D~~~~~~~l~~l~  124 (214)
                          .-....||.|++..+       .-+|.|.|+|..++-..+++|-
T Consensus        70 ~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR  117 (223)
T cd00218          70 TWLKPRGVEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMR  117 (223)
T ss_pred             ccCCcccHHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHh
Confidence                113567999997753       2578899999999988888854

Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).

>PLN02458 transferase, transferring glycosyl groups

Probab=96.86  E-value=0.0059  Score=50.20  Aligned_cols=100  Identities=10%  Similarity=0.062  Sum_probs=64.0

Q ss_pred             CCceEEEEEEeC-CC--chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc--CCCc
Q psy1766          14 LPSTSVIICFYN-EH--PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT--SKRE   88 (214)
Q Consensus        14 ~p~vSVIIp~~n-~~--~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~--~~~~   88 (214)
                      .+.|-||.|+|. +.  ...|.+.-+.| ....++  .-.|||+|+... ..+.+++++       .++.+.+.  +.+.
T Consensus       111 ~rlIivVTPTY~rR~~Q~a~LTRLahTL-~lVp~p--L~WIVVEd~~~t-~~va~lLrr-------sGl~y~HL~~k~~~  179 (346)
T PLN02458        111 RRLVIIVTPISTKDRYQGVLLRRLANTL-RLVPPP--LLWIVVEGQSDS-EEVSEMLRK-------TGIMYRHLVFKENF  179 (346)
T ss_pred             CceEEEECCCCCCcchhHHHHHHHHHHH-hcCCCC--ceEEEEeCCCCC-HHHHHHHHH-------cCCceEEeccCCCC
Confidence            356899999998 33  34455444444 344445  489999988763 344444444       24444333  3332


Q ss_pred             -----chHHHHHhhhhhcC----CCEEEEEcCCCccCcCchHHHH
Q psy1766          89 -----GLIRARMFGAKYAT----GKVLVFLDSHIEVNTHWLEPLL  124 (214)
Q Consensus        89 -----G~~~a~n~g~~~a~----gd~i~~lD~D~~~~~~~l~~l~  124 (214)
                           .....||.|++..+    .-+|.|.|+|..++-+.++++-
T Consensus       180 ~~~~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEmR  224 (346)
T PLN02458        180 TDPEAELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEIR  224 (346)
T ss_pred             CCccchhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHHh
Confidence                 12466999998874    3688999999999888887754

>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A

Probab=96.83  E-value=0.0073  Score=43.49  Aligned_cols=73  Identities=14%  Similarity=0.142  Sum_probs=46.2

Q ss_pred             ceEEEEEEeCCCchHHHHHHHH---HHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766          16 STSVIICFYNEHPATLYRSVQT---LLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR   92 (214)
Q Consensus        16 ~vSVIIp~~n~~~~~l~~~l~s---l~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~   92 (214)
                      +++||||.+|++ +.|...|..   +++...-.  +.|+||+...+                           ..+..|.
T Consensus        48 kvAiIIPyRdR~-~hL~~fl~~l~~~L~rQ~~~--y~I~vieQ~~~---------------------------~~FNRg~   97 (136)
T PF13733_consen   48 KVAIIIPYRDRE-EHLRIFLPHLHPFLQRQQLD--YRIFVIEQVDN---------------------------GPFNRGK   97 (136)
T ss_dssp             EEEEEEEESS-H-HHHHHHHHHHHHHHHHTT-E--EEEEEEEE-SS---------------------------S---HHH
T ss_pred             ceEEEEEeCCHH-HHHHHHHHHHHHHHhhCcce--EEEEEEeeccC---------------------------CCCchhh
Confidence            899999999999 777666654   34332223  79999988754                           1234556


Q ss_pred             HHHhhhhhc----CCCEEEEEcCCCccCcC
Q psy1766          93 ARMFGAKYA----TGKVLVFLDSHIEVNTH  118 (214)
Q Consensus        93 a~n~g~~~a----~gd~i~~lD~D~~~~~~  118 (214)
                      -+|.|...|    ..|+++|-|-|..+..+
T Consensus        98 L~NvGf~eA~~~~~~dc~ifHDVDllP~~~  127 (136)
T PF13733_consen   98 LMNVGFLEALKDDDFDCFIFHDVDLLPEND  127 (136)
T ss_dssp             HHHHHHHHHHHHS--SEEEEE-TTEEESBT
T ss_pred             hhhHHHHHHhhccCCCEEEEecccccccCC
Confidence            677776665    45899999999887554

...

>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans

Probab=96.80  E-value=0.0035  Score=50.31  Aligned_cols=108  Identities=17%  Similarity=0.165  Sum_probs=68.6

Q ss_pred             eEEEEEE-eCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHH
Q psy1766          17 TSVIICF-YNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARM   95 (214)
Q Consensus        17 vSVIIp~-~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n   95 (214)
                      +||||.+ |.+. +.|.+.|.++.+...-   .||+||=++...   .... ......  ...|+++..+.|  .-..|-
T Consensus         1 fTvvi~t~~~R~-~~L~~~l~~l~~~~~l---~~IvVvWn~~~~---~P~~-~~~~~~--~vpV~~~~~~~n--sLnnRF   68 (247)
T PF09258_consen    1 FTVVINTSYKRS-DLLKRLLRHLASSPSL---RKIVVVWNNPNP---PPPS-SKWPST--GVPVRVVRSSRN--SLNNRF   68 (247)
T ss_dssp             EEEEEEE-SS-H-HHHHHHHHHHTTSTTE---EEEEEEEE-TS-----THH-HHHT-----S-EEEEEESSH--HGGGGG
T ss_pred             CEEEEEecccch-HHHHHHHHHHHcCCCC---CeEEEEeCCCCC---CCcc-cccCCC--CceEEEEecCCc--cHHhcC
Confidence            4899999 9998 9999999998444332   589998666431   1111 111111  257888875432  112333


Q ss_pred             hhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766          96 FGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus        96 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~  136 (214)
                      .-....+++-|+.+|+|..++.+.|+...+...+.++-+|+
T Consensus        69 ~p~~~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVG  109 (247)
T PF09258_consen   69 LPDPEIETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVG  109 (247)
T ss_dssp             S--TT--SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEE
T ss_pred             cCccccCcceEEEecCCcccCHHHHHHHHHHHHhChhheeC
Confidence            44456689999999999999999999999999888877665

They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.

>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional

Probab=96.71  E-value=0.019  Score=52.10  Aligned_cols=104  Identities=12%  Similarity=0.149  Sum_probs=63.1

Q ss_pred             CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCCh----HHHHHHHHhhcCCCcEEEEEcCCC---
Q psy1766          15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL----HGEVETFVKGLNNGRVHLYRTSKR---   87 (214)
Q Consensus        15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t----~~~~~~~~~~~~~~~v~~i~~~~~---   87 (214)
                      -+..||||+.||.+..    |+.++...+.+  +-||||-|++..|.+.    .+.++.+..-- ...+-++++ +.   
T Consensus        55 ~~~aivvp~k~e~~~~----~~gvl~~ip~~--c~ii~vsns~r~~~d~~~~e~~~~~~~~~~~-~~~~~~vhq-~dp~~  126 (694)
T PRK14502         55 KKMAIVLPIKDEDLKV----FEGVLSGIPHD--CLMIVISNSSKQEVDNFKNEKDIVNRFCRIT-HRQAIVVHQ-KNPEL  126 (694)
T ss_pred             hCcEEEEEcCCCchhH----HhhHhhcCCCC--CeEEEEeCCCCCchHHHHHHHHHHHHHHHhh-cCceEEEEc-CCHHH
Confidence            3689999999999544    44445444555  6888888887621111    22344444321 234555553 22   


Q ss_pred             --------------------cchHHHHHhhhhhc---CCCEEEEEcCCCccCcCchHHHHHHH
Q psy1766          88 --------------------EGLIRARMFGAKYA---TGKVLVFLDSHIEVNTHWLEPLLVPI  127 (214)
Q Consensus        88 --------------------~G~~~a~n~g~~~a---~gd~i~~lD~D~~~~~~~l~~l~~~~  127 (214)
                                          -|++.++-.|+..|   ..+||-|+|+|..++-. +.+.+..+
T Consensus       127 a~a~~~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~pg~-v~ey~~~y  188 (694)
T PRK14502        127 ANAIADAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYIPGA-VWEYAKHF  188 (694)
T ss_pred             HHHHHHcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCCCch-HHHHHHHH
Confidence                                36666777776555   45999999999987644 44444444

>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []

Probab=96.61  E-value=0.0054  Score=50.47  Aligned_cols=107  Identities=13%  Similarity=0.147  Sum_probs=69.0

Q ss_pred             ceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc-----------
Q psy1766          16 STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT-----------   84 (214)
Q Consensus        16 ~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~-----------   84 (214)
                      .+.||||+-...+....+.-+.++    ..  |.+|||-|+..  .+..++.+-+       ...++..           
T Consensus         9 ~~divi~~~~~~l~~~~~~wr~~~----~~--~hliiv~d~~~--~~~~~~p~g~-------~~~~y~~~di~~~lg~~~   73 (348)
T PF03214_consen    9 EVDIVIPALRPNLTDFLEEWRPFF----SP--YHLIIVQDPDP--NEEIKVPEGF-------DYEVYNRNDIERVLGAKT   73 (348)
T ss_pred             cccEEeecccccHHHHHHHHHHhh----cc--eeEEEEeCCCc--cccccCCccc-------ceeeecHhhHHhhcCCcc
Confidence            588999998766334444444543    23  68999988865  3332222211       1112111           


Q ss_pred             CCCcchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEe
Q psy1766          85 SKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP  137 (214)
Q Consensus        85 ~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~  137 (214)
                      .-.+...++||.|.-.++.+|++++|+|+.+..+..-..++.+.++.....+|
T Consensus        74 ~i~~~~~a~R~fGyL~s~~~yivsiDDD~~P~~D~~g~~~~~v~qh~~~~~~~  126 (348)
T PF03214_consen   74 LIPFKGDACRNFGYLVSKKDYIVSIDDDCLPAKDDFGTHIDAVAQHVENLSTP  126 (348)
T ss_pred             cccccccchhhhHhhhcccceEEEEccccccccCCccceehhhhccceeeecc
Confidence            11223467899999999999999999999998888877777776665555544

It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction

>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function

Probab=96.55  E-value=0.031  Score=42.12  Aligned_cols=101  Identities=16%  Similarity=0.196  Sum_probs=66.0

Q ss_pred             CCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-CCcchHHHHHhhhhhcC-
Q psy1766          25 NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-KREGLIRARMFGAKYAT-  102 (214)
Q Consensus        25 n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~G~~~a~n~g~~~a~-  102 (214)
                      +.. ..+..+++.+.... .   .+|+||-+...  .    ........   ..+.++..+ ...|...+...|++.+. 
T Consensus        24 ~g~-~li~~~i~~l~~~~-~---~~i~vv~~~~~--~----~~~~~~~~---~~~~~~~~~~~~~G~~~~i~~al~~~~~   89 (186)
T cd04182          24 DGK-PLLRHALDAALAAG-L---SRVIVVLGAEA--D----AVRAALAG---LPVVVVINPDWEEGMSSSLAAGLEALPA   89 (186)
T ss_pred             CCe-eHHHHHHHHHHhCC-C---CcEEEECCCcH--H----HHHHHhcC---CCeEEEeCCChhhCHHHHHHHHHHhccc
Confidence            344 67777888776542 2   26766644322  1    12222222   245555433 34688889999999886 


Q ss_pred             -CCEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEeee
Q psy1766         103 -GKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVPII  139 (214)
Q Consensus       103 -gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~~~  139 (214)
                       .++++++.+|.. ++++.+..+++.+.++...+++|..
T Consensus        90 ~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~~~  128 (186)
T cd04182          90 DADAVLILLADQPLVTAETLRALIDAFREDGAGIVAPVY  128 (186)
T ss_pred             cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Confidence             799999999985 6889999999988765666666643

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>KOG1476|consensus

Probab=96.47  E-value=0.039  Score=45.13  Aligned_cols=104  Identities=18%  Similarity=0.186  Sum_probs=65.7

Q ss_pred             CCceEEEEEEeCCC--chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcch-
Q psy1766          14 LPSTSVIICFYNEH--PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGL-   90 (214)
Q Consensus        14 ~p~vSVIIp~~n~~--~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~-   90 (214)
                      .|.|-||.|+|.+.  ...|.+.-.+| .+.. +  -..|||+||+.....+..++++-     +-..+++..+...+. 
T Consensus        86 ~~~iivVTPTY~R~~q~~~LtRlanTL-~~V~-n--LhWIVVEd~~~~~p~v~~~L~rt-----gl~ythl~~~t~~~~~  156 (330)
T KOG1476|consen   86 LPTIIVVTPTYVRPVQAAELTRLANTL-RLVP-N--LHWIVVEDGEGTTPEVSGILRRT-----GLPYTHLVHKTPMGYK  156 (330)
T ss_pred             CccEEEEcccccchhHHHHHHHHHHHH-hhcC-C--eeEEEEecCCCCCHHHHHHHHHc-----CCceEEEeccCCCCCc
Confidence            57899999999987  33444433333 3444 5  48999999953113444454442     223334443444442 


Q ss_pred             ----HHHHHhhhhhcC---------CCEEEEEcCCCccCcCchHHHHHHH
Q psy1766          91 ----IRARMFGAKYAT---------GKVLVFLDSHIEVNTHWLEPLLVPI  127 (214)
Q Consensus        91 ----~~a~n~g~~~a~---------gd~i~~lD~D~~~~~~~l~~l~~~~  127 (214)
                          -..||.|+++.+         .-+|.|-|+|..++-+.+++ ++..
T Consensus       157 ~~rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~e-iR~v  205 (330)
T KOG1476|consen  157 ARRGWEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEE-IRNV  205 (330)
T ss_pred             cccchhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHH-Hhcc
Confidence                468999987765         35788889999999888888 4444

>PLN02893 Cellulose synthase-like protein

Probab=96.38  E-value=0.067  Score=49.07  Aligned_cols=47  Identities=19%  Similarity=0.332  Sum_probs=40.6

Q ss_pred             CCCCceEEEEEE---eCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCC
Q psy1766          12 STLPSTSVIICF---YNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSE   58 (214)
Q Consensus        12 ~~~p~vSVIIp~---~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~   58 (214)
                      +++|.|.|.|++   +.|+.-....++-|+++-+||..+.-+.|.|||.+
T Consensus        98 ~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs  147 (734)
T PLN02893         98 SDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGS  147 (734)
T ss_pred             ccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCcc
Confidence            469999999999   55555678889999999999988888999999986

>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed

Probab=96.38  E-value=0.083  Score=40.41  Aligned_cols=90  Identities=11%  Similarity=0.101  Sum_probs=58.4

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC--CcchHHHHHhhhhhcCCCEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK--REGLIRARMFGAKYATGKVL  106 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~--~~G~~~a~n~g~~~a~gd~i  106 (214)
                      ..|..+++.+.  ..-   .+|+||-+...      +.+..       ..++++....  ..|...+...|++..+.+++
T Consensus        31 ~ll~~~i~~l~--~~~---~~i~vv~~~~~------~~~~~-------~~~~~v~~~~~~~~g~~~~i~~~l~~~~~~~v   92 (193)
T PRK00317         31 PLIQHVIERLA--PQV---DEIVINANRNL------ARYAA-------FGLPVIPDSLADFPGPLAGILAGLKQARTEWV   92 (193)
T ss_pred             EHHHHHHHHHh--hhC---CEEEEECCCCh------HHHHh-------cCCcEEeCCCCCCCCCHHHHHHHHHhcCCCeE
Confidence            56777777765  222   37777733211      11211       1344454322  36777888889988888999


Q ss_pred             EEEcCCCc-cCcCchHHHHHHHhcCCCEEEE
Q psy1766         107 VFLDSHIE-VNTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus       107 ~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~  136 (214)
                      +++++|.. ++++.++.+++.+.+....+++
T Consensus        93 lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~  123 (193)
T PRK00317         93 LVVPCDTPFIPPDLVARLAQAAGKDDADVAW  123 (193)
T ss_pred             EEEcCCcCCCCHHHHHHHHHhhhcCCCcEEE
Confidence            99999995 5899999999987555444443

>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B

Probab=96.25  E-value=0.072  Score=39.26  Aligned_cols=100  Identities=12%  Similarity=0.218  Sum_probs=70.0

Q ss_pred             EEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-CCcchHHHHHhhhh
Q psy1766          21 ICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-KREGLIRARMFGAK   99 (214)
Q Consensus        21 Ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~G~~~a~n~g~~   99 (214)
                      ++. +.. ..+..+++.+.+... .   +|+|+-...        .+.+....   .+++++..+ ...|...+.-.|+.
T Consensus        19 ~~i-~g~-~li~~~l~~l~~~~~-~---~Ivvv~~~~--------~~~~~~~~---~~~~~v~~~~~~~G~~~sl~~a~~   81 (160)
T PF12804_consen   19 LPI-GGK-PLIERVLEALREAGV-D---DIVVVTGEE--------EIYEYLER---YGIKVVVDPEPGQGPLASLLAALS   81 (160)
T ss_dssp             SEE-TTE-EHHHHHHHHHHHHTE-S---EEEEEESTH--------HHHHHHTT---TTSEEEE-STSSCSHHHHHHHHHH
T ss_pred             eeE-CCc-cHHHHHHHHhhccCC-c---eEEEecChH--------HHHHHHhc---cCceEEEeccccCChHHHHHHHHH
Confidence            344 555 677888887765542 2   788876652        22222333   367777754 46899999999999


Q ss_pred             hc-CCCEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEe
Q psy1766         100 YA-TGKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVP  137 (214)
Q Consensus       100 ~a-~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~  137 (214)
                      .. ..+.++++..|.. ++++.+..+++.+.+.+..++++
T Consensus        82 ~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~  121 (160)
T PF12804_consen   82 QLPSSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVP  121 (160)
T ss_dssp             TSTTSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEE
T ss_pred             hcccCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEE
Confidence            98 8999999999995 59999999999997654444443

...

>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family

Probab=96.20  E-value=0.11  Score=39.28  Aligned_cols=98  Identities=20%  Similarity=0.255  Sum_probs=64.7

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC-CcchHHHHHhhhh-hcCCCEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK-REGLIRARMFGAK-YATGKVL  106 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~-~~G~~~a~n~g~~-~a~gd~i  106 (214)
                      ..+...++.+.+.. .   .+|+||-+...     .+..+.+...   .++.++.... ..|...+...|++ ....+++
T Consensus        26 pll~~~i~~l~~~~-~---~~iivv~~~~~-----~~~~~~~~~~---~~v~~v~~~~~~~g~~~si~~~l~~~~~~~~v   93 (188)
T TIGR03310        26 TILEHVVDNALRLF-F---DEVILVLGHEA-----DELVALLANH---SNITLVHNPQYAEGQSSSIKLGLELPVQSDGY   93 (188)
T ss_pred             eHHHHHHHHHHHcC-C---CcEEEEeCCcH-----HHHHHHhccC---CCeEEEECcChhcCHHHHHHHHhcCCCCCCEE
Confidence            67888887776543 2   26766644332     1233333322   3566666432 3577888888887 4567899


Q ss_pred             EEEcCCCc-cCcCchHHHHHHHhcCCCEEEEee
Q psy1766         107 VFLDSHIE-VNTHWLEPLLVPIAERTNTVTVPI  138 (214)
Q Consensus       107 ~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~~  138 (214)
                      +++++|.. ++++.++.+++.+.++...+++|.
T Consensus        94 lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~  126 (188)
T TIGR03310        94 LFLLGDQPFVTPDIIQLLLEAFALKNDEIVVPL  126 (188)
T ss_pred             EEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEee
Confidence            99999985 688999999988766666566654

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.

>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids

Probab=96.15  E-value=0.028  Score=44.14  Aligned_cols=76  Identities=17%  Similarity=0.164  Sum_probs=52.1

Q ss_pred             ceEEEEEEeCCCchHHHHHHHHH---HhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766          16 STSVIICFYNEHPATLYRSVQTL---LSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR   92 (214)
Q Consensus        16 ~vSVIIp~~n~~~~~l~~~l~sl---~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~   92 (214)
                      +++||||.+++. +.|...|..+   ++...-.  +.|+||+....                           ..+..+.
T Consensus         3 ~~aiivpyr~R~-~~l~~~l~~~~~~L~rq~~~--~~i~vi~Q~~~---------------------------~~FNR~~   52 (219)
T cd00899           3 KVAIIVPFRNRF-EHLLIFLPHLHPFLQRQQLD--YRIFVIEQVGN---------------------------FRFNRAK   52 (219)
T ss_pred             ceEEEEecCCHH-HHHHHHHHHHHHHHHhcCCc--EEEEEEEecCC---------------------------ccchhhh
Confidence            689999999999 7776666554   3332222  57777765432                           1334566


Q ss_pred             HHHhhhhhc----CCCEEEEEcCCCccCcCchH
Q psy1766          93 ARMFGAKYA----TGKVLVFLDSHIEVNTHWLE  121 (214)
Q Consensus        93 a~n~g~~~a----~gd~i~~lD~D~~~~~~~l~  121 (214)
                      .+|.|...|    ..++++|-|.|..+..+.+.
T Consensus        53 llNvG~~~a~k~~~~dc~i~hDVDllP~~~~~~   85 (219)
T cd00899          53 LLNVGFLEALKDGDWDCFIFHDVDLLPENDRNL   85 (219)
T ss_pred             hhhHHHHHHhhcCCccEEEEecccccccCcccc
Confidence            777776665    36899999999998877754

Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.

>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum

Probab=96.13  E-value=0.044  Score=45.13  Aligned_cols=115  Identities=10%  Similarity=0.072  Sum_probs=68.7

Q ss_pred             CCceEEEEEEeCCC-chHHHHHHHHHHhcCCCCCccEE-EEEECCCCCCCChHHHHHHHHhhc----CCCcEEEEEcCCC
Q psy1766          14 LPSTSVIICFYNEH-PATLYRSVQTLLSRTGQSLLHEI-ILVNDFSEYPSNLHGEVETFVKGL----NNGRVHLYRTSKR   87 (214)
Q Consensus        14 ~p~vSVIIp~~n~~-~~~l~~~l~sl~~q~~~~~~~ei-ivVdd~s~~~d~t~~~~~~~~~~~----~~~~v~~i~~~~~   87 (214)
                      -++++|=||+-.++ -.+|..+|.||+....+...-++ |||-=+.++|+......+.+..++    ....+.+|..+..
T Consensus        51 ~~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~~p~~  130 (297)
T PF04666_consen   51 GKKLCIGIPTVKREKESYLLDTLASLLDGLSPEERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVISPPPS  130 (297)
T ss_pred             CCeEEEEecccccCCCchHHHHHHHHHHhCCHHHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEecccc
Confidence            34599999997654 48999999999987766432223 233222222133444444443322    1234455443221


Q ss_pred             --------------------------cchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcC
Q psy1766          88 --------------------------EGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAER  130 (214)
Q Consensus        88 --------------------------~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~  130 (214)
                                                ...+..++.+.  ..|+|.+.|.+|....++|+..+...+..-
T Consensus       131 ~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~--~~~~YyL~LEDDVia~~~f~~~i~~~v~~~  197 (297)
T PF04666_consen  131 YYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQ--NLGDYYLQLEDDVIAAPGFLSRIKRFVEAW  197 (297)
T ss_pred             cCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHH--hcCCeEEEecCCeEechhHHHHHHHHHHHh
Confidence                                      12222233222  268999999999999999999999988543

N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane

>KOG1413|consensus

Probab=96.06  E-value=0.069  Score=44.46  Aligned_cols=122  Identities=11%  Similarity=0.108  Sum_probs=83.9

Q ss_pred             CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC----C----CcEEEEE
Q psy1766          12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN----N----GRVHLYR   83 (214)
Q Consensus        12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~----~----~~v~~i~   83 (214)
                      ..+|.+.||+-+.|+. +.|++++..|+.+.+....+-|||.-||..  ..+.+.+..+.....    .    ..|.+-.
T Consensus        64 ~~~~v~pvvVf~csR~-~~lr~~v~kll~yrPsaekfpiiVSQD~~~--e~vk~~~~~~g~~v~~i~~~~h~~~ei~v~~  140 (411)
T KOG1413|consen   64 NWPPVIPVVVFACSRA-DALRRHVKKLLEYRPSAEKFPIIVSQDCEK--EAVKKKLLSYGSDVSHIQHPMHLKDEISVPP  140 (411)
T ss_pred             CCCCceeEEEEecCcH-HHHHHHHHHHHHhCcchhhcCEEEeccCCc--HHHHHHHHHhccchhhhcCccccccccccCC
Confidence            4567789999999998 999999999999987777788899888887  677777777654320    0    0111111


Q ss_pred             c-CCCcc-------hHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHH---HhcCCCEEEE
Q psy1766          84 T-SKREG-------LIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVP---IAERTNTVTV  136 (214)
Q Consensus        84 ~-~~~~G-------~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~---~~~~~~~vv~  136 (214)
                      . .+..+       ...|.|..+...+.+.++.+.+|.-+.|+|++.+...   ++.++.+-++
T Consensus       141 ~~~k~~~Yy~IarHYkwAL~q~F~~~~~s~vii~eDDl~iapDFF~YF~~t~~llk~D~siwcv  204 (411)
T KOG1413|consen  141 RHKKFNAYYKIARHYKWALNQLFIVFRESRVIITEDDLNIAPDFFSYFRNTIILLKGDPSIWCV  204 (411)
T ss_pred             cccccchhHHHHHHHHHHHhhHHhhcCCceeEEecchhhhhhHHHHHHHHHHHHHhcCCceEEe
Confidence            1 11111       2335555555557899999999999999998776654   3555555544

>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2

Probab=96.04  E-value=0.0045  Score=47.18  Aligned_cols=34  Identities=18%  Similarity=0.338  Sum_probs=27.0

Q ss_pred             EEEEEcCCCccCcCchHHHHHHHhcCCCEEEEee
Q psy1766         105 VLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPI  138 (214)
Q Consensus       105 ~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~  138 (214)
                      ||+++|+|+.+++++++++++.++++...++.+.
T Consensus         1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~   34 (193)
T PF13632_consen    1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGP   34 (193)
T ss_pred             CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEcc
Confidence            6899999999999999999999984334444333

>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB

Probab=95.98  E-value=0.18  Score=38.43  Aligned_cols=103  Identities=17%  Similarity=0.174  Sum_probs=64.9

Q ss_pred             CCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-CCcchHHHHHhhhhhc--
Q psy1766          25 NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-KREGLIRARMFGAKYA--  101 (214)
Q Consensus        25 n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~G~~~a~n~g~~~a--  101 (214)
                      +.. ..|..+++.+++.. .   .+|+||-+...   ...+.+.+....  ..++.++.++ ...|...+.-.|++++  
T Consensus        24 ~g~-~ll~~~i~~~~~~~-~---~~i~vv~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~G~~~si~~gl~~~~~   93 (190)
T TIGR03202        24 GET-TLGSASLKTALSSR-L---SKVIVVIGEKY---AHLSWLDPYLLA--DERIMLVCCRDACEGQAHSLKCGLRKAEA   93 (190)
T ss_pred             CCc-cHHHHHHHHHHhCC-C---CcEEEEeCCcc---chhhhhhHhhhc--CCCeEEEECCChhhhHHHHHHHHHHHhcc
Confidence            445 67788887765432 2   37777775433   222222222111  1345555433 3457888888898876  


Q ss_pred             -CCCEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEe
Q psy1766         102 -TGKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVP  137 (214)
Q Consensus       102 -~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~  137 (214)
                       ..++++++++|.. ++++.+..+++.+.+.+..++++
T Consensus        94 ~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~~~~  131 (190)
T TIGR03202        94 MGADAVVILLADQPFLTADVINALLALAKRRPDDYVAA  131 (190)
T ss_pred             CCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCCEEEE
Confidence             4799999999988 58899999999886655444444

In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.

>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]

Probab=95.94  E-value=0.23  Score=39.70  Aligned_cols=113  Identities=12%  Similarity=0.057  Sum_probs=67.1

Q ss_pred             EEEEEeCCCchHHHH----HHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC--CCcEEEEEcCC---C--
Q psy1766          19 VIICFYNEHPATLYR----SVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN--NGRVHLYRTSK---R--   87 (214)
Q Consensus        19 VIIp~~n~~~~~l~~----~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~--~~~v~~i~~~~---~--   87 (214)
                      |..-.||.+ +.|..    .|-.++..-.+.. .-|-|+++||.  |.|.+.++.+.....  +.+-.+...+.   .  
T Consensus         4 IA~~l~~~~-~iL~~~~~~~ll~li~~LGp~n-v~vSIyE~~S~--D~T~~~L~~L~~~L~~lgv~~~i~~~~~~~~~~~   79 (241)
T PF11735_consen    4 IAANLYNNE-DILPSLWGDALLELIRFLGPEN-VFVSIYESGSW--DGTKEALRALDAELDALGVPHSIVLSDITHRDEI   79 (241)
T ss_pred             EEEEcccCH-hHHHHHHHHHHHHHHHHhCcCe-EEEEEEeCCCC--ccHHHHHHHHHHHHHhCCCCeEEEeCCCcccccc
Confidence            444557666 44443    3444444444432 56778999999  899999998874321  22222222111   1  


Q ss_pred             ---------cchHHHHHhhhhhc---------CCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766          88 ---------EGLIRARMFGAKYA---------TGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus        88 ---------~G~~~a~n~g~~~a---------~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~  136 (214)
                               .-.+.-||.|++--         .-+-|+|++ |..+.+.-+-+++..-..+...++|
T Consensus        80 ~~~~~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd~VlfLN-DV~f~~~Dil~LL~~~~~~~~~~aC  145 (241)
T PF11735_consen   80 ERPPRLRRIEYLAELRNRALEPLYDLARKRGRRFDKVLFLN-DVFFCPEDILELLFTRNRGNYDMAC  145 (241)
T ss_pred             cccchhhhHHHHHHHHhHHHHHHHhhhhccCCCcCEEEEec-CcccCHHHHHHHHhhcCcccccchh
Confidence                     11368899998532         236799998 7788777676666665533444444

It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.

>KOG3916|consensus

Probab=95.78  E-value=0.057  Score=44.73  Aligned_cols=73  Identities=16%  Similarity=0.162  Sum_probs=49.2

Q ss_pred             ceEEEEEEeCCCchHHHHHHHH---HHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766          16 STSVIICFYNEHPATLYRSVQT---LLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR   92 (214)
Q Consensus        16 ~vSVIIp~~n~~~~~l~~~l~s---l~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~   92 (214)
                      +|.||||.+|++ +.|...|.-   ++++..-+  |-|+||+...++                           .+..+.
T Consensus       152 kvAIIIPfR~Re-~HL~~~l~~LhP~LqrQrL~--y~iyVieQ~g~~---------------------------~FNRak  201 (372)
T KOG3916|consen  152 KVAIIIPFRNRE-EHLRYLLHHLHPFLQRQRLD--YRIYVIEQAGNK---------------------------PFNRAK  201 (372)
T ss_pred             eeEEEeecccHH-HHHHHHHHHhhHHHHhhhhc--eeEEEEEecCCC---------------------------cccHHH
Confidence            799999999999 666655544   44443333  688888776541                           233455


Q ss_pred             HHHhhhhhc----CCCEEEEEcCCCccCcC
Q psy1766          93 ARMFGAKYA----TGKVLVFLDSHIEVNTH  118 (214)
Q Consensus        93 a~n~g~~~a----~gd~i~~lD~D~~~~~~  118 (214)
                      -+|.|...|    .-|.++|-|-|..+..+
T Consensus       202 L~NVGf~eAlkd~~wdCfIFHDVDllPenD  231 (372)
T KOG3916|consen  202 LLNVGFLEALKDYGWDCFIFHDVDLLPEND  231 (372)
T ss_pred             hhhhHHHHHHHhcCCCEEEEecccccccCC
Confidence            667666555    45789999999877544

>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ]

Probab=95.72  E-value=0.42  Score=40.30  Aligned_cols=117  Identities=21%  Similarity=0.240  Sum_probs=78.0

Q ss_pred             eEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCCh-HH----------------HHHHHHhh------
Q psy1766          17 TSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL-HG----------------EVETFVKG------   73 (214)
Q Consensus        17 vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t-~~----------------~~~~~~~~------   73 (214)
                      |=|.|.+|-..  .+..||.+++++...+...-|=|++..... +.. ..                ....+...      
T Consensus         2 IFvsiasyRD~--~c~~Tl~~~~~~A~~P~r~~~gv~~Q~~~~-~~~c~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~   78 (343)
T PF11397_consen    2 IFVSIASYRDP--ECAPTLKDLFARATNPERLFVGVVWQHYEE-DPPCLSEGAPMDPGVHAAREEECVYCFLASSACAEW   78 (343)
T ss_pred             EEEEEeeecCc--hHHHHHHHHHHhcCCCceEEEEEEEEecCC-CCcccccccccccccccccccchhhhhhhccccccc
Confidence            55788888775  588999999887766544556666654432 222 10                01111110      


Q ss_pred             ------cCCCcEEEEEc--CCCcchHHHHHhhhhhcCC-CEEEEEcCCCccCcCchHHHHHHHhc--CCCEEEE
Q psy1766          74 ------LNNGRVHLYRT--SKREGLIRARMFGAKYATG-KVLVFLDSHIEVNTHWLEPLLVPIAE--RTNTVTV  136 (214)
Q Consensus        74 ------~~~~~v~~i~~--~~~~G~~~a~n~g~~~a~g-d~i~~lD~D~~~~~~~l~~l~~~~~~--~~~~vv~  136 (214)
                            ....+|++++.  ....|.+.||+.+.+.-+| +|++-+|+...+.++|=+.+++.++.  ++..|+.
T Consensus        79 ~~~~~~~~~~~Ir~~~~~~~~a~Gp~~AR~la~~l~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~~~~aVLS  152 (343)
T PF11397_consen   79 PDGALCLRSDQIRVIRVDASEARGPCWARYLAQKLYRGEDYYLQIDSHMRFVPGWDEILIEMLKSLRNPKAVLS  152 (343)
T ss_pred             ccccccccCCeEEEEEeCHHHCcChHHHHHHHHHHhCCCeEEEEEeccceeeccHHHHHHHHHHhcCCCCeEEe
Confidence                  11246666654  4568999999999988876 79999999999999999999888753  4444444

>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU

Probab=95.70  E-value=0.25  Score=38.61  Aligned_cols=98  Identities=12%  Similarity=0.060  Sum_probs=65.6

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK   99 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~   99 (214)
                      ++|.-+ . ..+..+|+++.+...    .+++||-...      .+.+.++..+   .+++++..+...|.+.+.-.|+.
T Consensus        20 l~~v~g-k-pli~~~i~~l~~~~i----~~i~iv~~~~------~~~i~~~~~~---~~~~~~~~~~~~g~~~ai~~a~~   84 (229)
T cd02540          20 LHPLAG-K-PMLEHVLDAARALGP----DRIVVVVGHG------AEQVKKALAN---PNVEFVLQEEQLGTGHAVKQALP   84 (229)
T ss_pred             cceeCC-c-cHHHHHHHHHHhCCC----CeEEEEECCC------HHHHHHHhCC---CCcEEEECCCCCCCHHHHHHHHH
Confidence            445544 4 688888888876442    2666555321      2234444333   35677776666788888888888


Q ss_pred             hcC--CCEEEEEcCCC-ccCcCchHHHHHHHhcCCC
Q psy1766         100 YAT--GKVLVFLDSHI-EVNTHWLEPLLVPIAERTN  132 (214)
Q Consensus       100 ~a~--gd~i~~lD~D~-~~~~~~l~~l~~~~~~~~~  132 (214)
                      ...  .+.++++++|. .+.+..+..+++.+.+...
T Consensus        85 ~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~  120 (229)
T cd02540          85 ALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGA  120 (229)
T ss_pred             hhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCC
Confidence            765  68999999998 4678889998888765433

The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.

>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide

Probab=95.43  E-value=0.17  Score=38.13  Aligned_cols=93  Identities=15%  Similarity=0.184  Sum_probs=63.2

Q ss_pred             CCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-CCcchHHHHHhhhhhcCC
Q psy1766          25 NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-KREGLIRARMFGAKYATG  103 (214)
Q Consensus        25 n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~G~~~a~n~g~~~a~g  103 (214)
                      +.. ..|..+++.+...  .   .+|+||-+...  ..    .    ..   .+++++... ...|...+...|++....
T Consensus        24 ~g~-~ll~~~i~~l~~~--~---~~iivv~~~~~--~~----~----~~---~~~~~v~~~~~~~G~~~si~~~l~~~~~   84 (181)
T cd02503          24 GGK-PLLEHVLERLKPL--V---DEVVISANRDQ--ER----Y----AL---LGVPVIPDEPPGKGPLAGILAALRAAPA   84 (181)
T ss_pred             CCE-EHHHHHHHHHHhh--c---CEEEEECCCCh--HH----H----hh---cCCcEeeCCCCCCCCHHHHHHHHHhcCC
Confidence            344 6777777777543  2   27777755433  11    1    11   245666543 367888999999999889


Q ss_pred             CEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEe
Q psy1766         104 KVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVP  137 (214)
Q Consensus       104 d~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~  137 (214)
                      ++++++.+|.. ++++.+..+++.+ .....+++|
T Consensus        85 ~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~  118 (181)
T cd02503          85 DWVLVLACDMPFLPPELLERLLAAA-EEGADAVVP  118 (181)
T ss_pred             CeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCEEEE
Confidence            99999999996 5899999999887 333344444

The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.

>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=95.41  E-value=0.47  Score=38.43  Aligned_cols=99  Identities=15%  Similarity=0.261  Sum_probs=66.3

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK   99 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~   99 (214)
                      ++|+|+.+  -+.-+|..+...--.    +|+||-.--+. +...+.+-. -.++ +.+++|..+++..|.+.|.-.|-.
T Consensus        25 LlpV~~KP--mi~y~l~~L~~aGI~----dI~II~~~~~~-~~~~~llGd-gs~~-gv~itY~~Q~~p~GlA~Av~~a~~   95 (286)
T COG1209          25 LLPVYDKP--MIYYPLETLMLAGIR----DILIVVGPEDK-PTFKELLGD-GSDF-GVDITYAVQPEPDGLAHAVLIAED   95 (286)
T ss_pred             cceecCcc--hhHhHHHHHHHcCCc----eEEEEecCCch-hhhhhhhcC-cccc-CcceEEEecCCCCcHHHHHHHHHh
Confidence            68999985  777788887765543    67666554321 222222211 1122 468999999999999999999999


Q ss_pred             hcC-CCEEEEEcCCCccCcCchHHHHHHHhc
Q psy1766         100 YAT-GKVLVFLDSHIEVNTHWLEPLLVPIAE  129 (214)
Q Consensus       100 ~a~-gd~i~~lD~D~~~~~~~l~~l~~~~~~  129 (214)
                      ... .++++++. |..+.. -+++++..+.+
T Consensus        96 fv~~~~f~l~LG-DNi~~~-~l~~~~~~~~~  124 (286)
T COG1209          96 FVGDDDFVLYLG-DNIFQD-GLSELLEHFAE  124 (286)
T ss_pred             hcCCCceEEEec-Cceecc-ChHHHHHHHhc
Confidence            997 56666665 455544 68888887755

>PLN02917 CMP-KDO synthetase

Probab=95.40  E-value=0.34  Score=39.90  Aligned_cols=109  Identities=13%  Similarity=0.099  Sum_probs=63.7

Q ss_pred             CceEEEEEEeCCC-------------chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEE
Q psy1766          15 PSTSVIICFYNEH-------------PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHL   81 (214)
Q Consensus        15 p~vSVIIp~~n~~-------------~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~   81 (214)
                      +++.+|||+....             ...|...++.+......   ..|+|. ..+   +...+.+    .++   ++.+
T Consensus        46 ~~i~aIIpA~G~SsR~~~K~L~~i~GkPLL~~vi~~a~~~~~~---~~VVV~-~~~---e~I~~~~----~~~---~v~v  111 (293)
T PLN02917         46 SRVVGIIPARFASSRFEGKPLVHILGKPMIQRTWERAKLATTL---DHIVVA-TDD---ERIAECC----RGF---GADV  111 (293)
T ss_pred             CcEEEEEecCCCCCCCCCCCeeeECCEEHHHHHHHHHHcCCCC---CEEEEE-CCh---HHHHHHH----HHc---CCEE
Confidence            4678888886643             24455666666543322   254443 222   2333333    332   4444


Q ss_pred             EEc--CCCcchHHHHHhhhhhcC--CCEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEee
Q psy1766          82 YRT--SKREGLIRARMFGAKYAT--GKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVPI  138 (214)
Q Consensus        82 i~~--~~~~G~~~a~n~g~~~a~--gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~~  138 (214)
                      +..  ....|.+.+ ..|++...  .++++++++|.. ++++.|..+++.+.++.+.++...
T Consensus       112 i~~~~~~~~GT~~~-~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~~~~iv~t~  172 (293)
T PLN02917        112 IMTSESCRNGTERC-NEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTA  172 (293)
T ss_pred             EeCCcccCCchHHH-HHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhcCCceEEEE
Confidence            432  334465555 35666553  689999999998 589999999998866554444333

>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed

Probab=95.30  E-value=0.54  Score=36.87  Aligned_cols=99  Identities=14%  Similarity=0.173  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhc-CCCEEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA-TGKVLV  107 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a-~gd~i~  107 (214)
                      ..+..+++.+......+   +|+||-+..    ......+.+...  ...+.++..  ..+.+.+.-.|++.. +.++++
T Consensus        32 pli~~~l~~l~~~~~~~---~ivvv~~~~----~~~~~~~~~~~~--~~~~~~~~~--~~~~~~sv~~~l~~~~~~d~vl  100 (227)
T PRK00155         32 PILEHTLEAFLAHPRID---EIIVVVPPD----DRPDFAELLLAK--DPKVTVVAG--GAERQDSVLNGLQALPDDDWVL  100 (227)
T ss_pred             EHHHHHHHHHHcCCCCC---EEEEEeChH----HHHHHHHHhhcc--CCceEEeCC--cchHHHHHHHHHHhCCCCCEEE
Confidence            56777888776543222   777776532    222222322211  123444432  224677777788775 578999


Q ss_pred             EEcCCCc-cCcCchHHHHHHHhcCCC-EEEEee
Q psy1766         108 FLDSHIE-VNTHWLEPLLVPIAERTN-TVTVPI  138 (214)
Q Consensus       108 ~lD~D~~-~~~~~l~~l~~~~~~~~~-~vv~~~  138 (214)
                      ++++|.. ++++.++.+++.+.++.. ..++|.
T Consensus       101 v~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~  133 (227)
T PRK00155        101 VHDAARPFLTPDDIDRLIEAAEETGAAILAVPV  133 (227)
T ss_pred             EccCccCCCCHHHHHHHHHHHhhCCCEEEEEec
Confidence            9999987 589999999998865433 455554

>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars

Probab=95.18  E-value=0.33  Score=37.43  Aligned_cols=99  Identities=14%  Similarity=0.111  Sum_probs=61.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK   99 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~   99 (214)
                      .+|.-+ . ..+..+|+++.+...    -+|+||-+...  +...+.+.+... + +..+.++..+...|.+.+...|++
T Consensus        23 ll~v~g-~-pli~~~l~~l~~~g~----~~i~vv~~~~~--~~i~~~~~~~~~-~-~~~i~~~~~~~~~g~~~al~~~~~   92 (217)
T cd04181          23 LLPIAG-K-PILEYIIERLARAGI----DEIILVVGYLG--EQIEEYFGDGSK-F-GVNIEYVVQEEPLGTAGAVRNAED   92 (217)
T ss_pred             ccEECC-e-eHHHHHHHHHHHCCC----CEEEEEeccCH--HHHHHHHcChhh-c-CceEEEEeCCCCCccHHHHHHhhh
Confidence            344444 3 678888888876542    27777665433  223333322110 1 235666665556788899999988


Q ss_pred             hcCCCEEEEEcCCCccCcCchHHHHHHHhc
Q psy1766         100 YATGKVLVFLDSHIEVNTHWLEPLLVPIAE  129 (214)
Q Consensus       100 ~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~  129 (214)
                      ....+.++++++|.....+ +..++....+
T Consensus        93 ~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~  121 (217)
T cd04181          93 FLGDDDFLVVNGDVLTDLD-LSELLRFHRE  121 (217)
T ss_pred             hcCCCCEEEEECCeecCcC-HHHHHHHHHh
Confidence            8777889999999987776 4555555443

Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.

>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function

Probab=94.77  E-value=0.35  Score=39.20  Aligned_cols=105  Identities=14%  Similarity=0.060  Sum_probs=69.3

Q ss_pred             eEEEE-EEeC-CC-chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC--------
Q psy1766          17 TSVII-CFYN-EH-PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS--------   85 (214)
Q Consensus        17 vSVII-p~~n-~~-~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~--------   85 (214)
                      ++|++ |.|. +. +..|.+-|+-...+..    ..+.+-+.+++  +.+.++++.+.+.   ..|+++..+        
T Consensus         3 ~~vCv~pl~~~~~~~~~l~e~ie~~~~~G~----~~~~~Y~~~~~--~~~~~vL~~Y~~~---g~v~~~~w~~~~~~~~~   73 (285)
T PF01697_consen    3 FVVCVSPLFGNEDDWLQLIEWIEYHRLLGV----DHFYFYDNSSS--PSVRKVLKEYERS---GYVEVIPWPLRPKFPDF   73 (285)
T ss_pred             EEEEccchhcccccHHHHHHHHHHHHHhCC----CEEEEEEccCC--HHHHHhHHHHhhc---CeEEEEEcccccccCCc
Confidence            55555 4454 43 2377777776655522    26777777777  7899999998775   467776653        


Q ss_pred             -----------CCcchHHHHHhhhhhc--CCCEEEEEcCCCccCcCc----hHHHHHHHhcC
Q psy1766          86 -----------KREGLIRARMFGAKYA--TGKVLVFLDSHIEVNTHW----LEPLLVPIAER  130 (214)
Q Consensus        86 -----------~~~G~~~a~n~g~~~a--~gd~i~~lD~D~~~~~~~----l~~l~~~~~~~  130 (214)
                                 ...|...|.|-++...  ..+|++|+|-|..+-|.-    .+.+...++..
T Consensus        74 ~~~~~~~~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~DiDE~lvP~~~~~~~~~~~~~l~~~  135 (285)
T PF01697_consen   74 PSPFPDPNSSVERRGQIAAYNDCLLRYRYRAKWVAFIDIDEFLVPTNAPTYPEEFEDLLREF  135 (285)
T ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHHhhhhceEEEEeccccEEEeccccchhhHHHHHHhhc
Confidence                       0134566777777666  468999999999975543    66666666543

The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.

>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases

Probab=94.69  E-value=0.84  Score=35.26  Aligned_cols=100  Identities=11%  Similarity=0.001  Sum_probs=60.3

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK   99 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~   99 (214)
                      ++|.-+.  ..+...|+.+.+...    -+|+|+-+...  +...+.+.... .+ +..+.+.......|.+.+.-.|++
T Consensus        23 ll~i~g~--pli~~~l~~l~~~g~----~~v~vv~~~~~--~~i~~~~~~~~-~~-~~~~~~~~~~~~~G~~~~l~~a~~   92 (223)
T cd06915          23 LAPVAGR--PFLEYLLEYLARQGI----SRIVLSVGYLA--EQIEEYFGDGY-RG-GIRIYYVIEPEPLGTGGAIKNALP   92 (223)
T ss_pred             ccEECCc--chHHHHHHHHHHCCC----CEEEEEcccCH--HHHHHHHcCcc-cc-CceEEEEECCCCCcchHHHHHHHh
Confidence            4444444  578888888776532    26777655332  22222222110 01 123445554566788888888888


Q ss_pred             hcCCCEEEEEcCCCccCcCchHHHHHHHhcC
Q psy1766         100 YATGKVLVFLDSHIEVNTHWLEPLLVPIAER  130 (214)
Q Consensus       100 ~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~  130 (214)
                      ....+.++++.+|..++.+ +..++..+.+.
T Consensus        93 ~~~~~~~lv~~~D~~~~~~-~~~~l~~~~~~  122 (223)
T cd06915          93 KLPEDQFLVLNGDTYFDVD-LLALLAALRAS  122 (223)
T ss_pred             hcCCCCEEEEECCcccCCC-HHHHHHHHHhC
Confidence            8877889999999877544 67777766443

WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.

>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]

Probab=94.65  E-value=0.11  Score=41.12  Aligned_cols=88  Identities=19%  Similarity=0.257  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC--CcchHHHHHhhhhhcCCCEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK--REGLIRARMFGAKYATGKVL  106 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~--~~G~~~a~n~g~~~a~gd~i  106 (214)
                      +-|.++|++|.+..-    -|++||-+|=.     .+.++.+..++ +...+++.++.  ..+.+..+-.|....+++ +
T Consensus        32 ~ii~~~i~~L~~~gi----~e~vvV~~g~~-----~~lve~~l~~~-~~~~~iv~N~~y~ktN~~~Sl~~akd~~~~~-f  100 (239)
T COG1213          32 EIIYRTIENLAKAGI----TEFVVVTNGYR-----ADLVEEFLKKY-PFNAKIVINSDYEKTNTGYSLLLAKDYMDGR-F  100 (239)
T ss_pred             EeHHHHHHHHHHcCC----ceEEEEeccch-----HHHHHHHHhcC-CcceEEEeCCCcccCCceeEEeeehhhhcCc-E
Confidence            578889999876665    38999987754     34677777776 33777777642  222345666778888888 7


Q ss_pred             EEEcCCCccCcCchHHHHHHH
Q psy1766         107 VFLDSHIEVNTHWLEPLLVPI  127 (214)
Q Consensus       107 ~~lD~D~~~~~~~l~~l~~~~  127 (214)
                      +++++|..++|.+++.+++.-
T Consensus       101 ii~~sD~vye~~~~e~l~~a~  121 (239)
T COG1213         101 ILVMSDHVYEPSILERLLEAP  121 (239)
T ss_pred             EEEeCCEeecHHHHHHHHhCc
Confidence            789999999999999998864

>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=94.60  E-value=0.92  Score=35.72  Aligned_cols=90  Identities=12%  Similarity=0.193  Sum_probs=51.4

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcCCCEEEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVF  108 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~  108 (214)
                      ..|..+++.+.+....   .+|+|+-+.    +    .+.++...+ +..+.+.......|.+. .-.++.....+.+++
T Consensus        28 Pli~~~i~~l~~~~~~---~~ivv~t~~----~----~i~~~~~~~-~~~v~~~~~~~~~g~~~-~~~a~~~~~~d~~lv   94 (238)
T PRK13368         28 PMIQHVYERAAQAAGV---EEVYVATDD----Q----RIEDAVEAF-GGKVVMTSDDHLSGTDR-LAEVMLKIEADIYIN   94 (238)
T ss_pred             CHHHHHHHHHHhcCCC---CeEEEECCh----H----HHHHHHHHc-CCeEEecCccCCCccHH-HHHHHHhCCCCEEEE
Confidence            5667777777664222   277775431    2    233333333 22332222222334443 333555555689999


Q ss_pred             EcCCCc-cCcCchHHHHHHHhcCC
Q psy1766         109 LDSHIE-VNTHWLEPLLVPIAERT  131 (214)
Q Consensus       109 lD~D~~-~~~~~l~~l~~~~~~~~  131 (214)
                      +++|.. +.+..+..+++.+.++.
T Consensus        95 ~~~D~P~i~~~~i~~l~~~~~~~~  118 (238)
T PRK13368         95 VQGDEPMIRPRDIDTLIQPMLDDP  118 (238)
T ss_pred             EcCCcCcCCHHHHHHHHHHHHHCC
Confidence            999984 68999999998885443

>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry

Probab=94.54  E-value=0.5  Score=37.37  Aligned_cols=99  Identities=13%  Similarity=0.108  Sum_probs=66.8

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC--CCcEEEEEcCCCcchHHHHHhh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN--NGRVHLYRTSKREGLIRARMFG   97 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~--~~~v~~i~~~~~~G~~~a~n~g   97 (214)
                      .+|..+.. .-|...|+.+.+...    -++|+|-.+..     .+.+.++.....  ...+.++..+...|.+.|.-.+
T Consensus        24 ll~i~g~~-pli~~~l~~l~~~g~----~~ii~V~~~~~-----~~~i~~~~~~~~~~~~~i~~i~~~~~~Gta~al~~a   93 (248)
T PF00483_consen   24 LLPIGGKY-PLIDYVLENLANAGI----KEIIVVVNGYK-----EEQIEEHLGSGYKFGVKIEYIVQPEPLGTAGALLQA   93 (248)
T ss_dssp             GSEETTEE-EHHHHHHHHHHHTTC----SEEEEEEETTT-----HHHHHHHHTTSGGGTEEEEEEEESSSSCHHHHHHHT
T ss_pred             cceecCCC-cchhhhhhhhcccCC----ceEEEEEeecc-----cccccccccccccccccceeeecccccchhHHHHHH
Confidence            45667775 678888888877444    27555555432     223444444321  1247888778888999999999


Q ss_pred             hhhcCCCE----EEEEcCCCccCcCchHHHHHHHhc
Q psy1766          98 AKYATGKV----LVFLDSHIEVNTHWLEPLLVPIAE  129 (214)
Q Consensus        98 ~~~a~gd~----i~~lD~D~~~~~~~l~~l~~~~~~  129 (214)
                      ......+-    ++++.+|..... -+..+++...+
T Consensus        94 ~~~i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~  128 (248)
T PF00483_consen   94 LDFIEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRE  128 (248)
T ss_dssp             HHHHTTSEE-SEEEEETTEEEEST-THHHHHHHHHH
T ss_pred             HHHhhhccccceEEEEeccccccc-hhhhHHHhhhc
Confidence            99887665    899999998877 56777766643

; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....

>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family

Probab=94.49  E-value=0.87  Score=35.43  Aligned_cols=101  Identities=8%  Similarity=0.065  Sum_probs=60.6

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-CCcchH
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-KREGLI   91 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~G~~   91 (214)
                      ..||.  .+|.-+.  ..+...|.++.+...    -+|+|+-....  +...+.+..  ..+ +..+.+.... +..|.+
T Consensus        19 ~~pK~--llpi~g~--~li~~~l~~l~~~gi----~~i~iv~~~~~--~~i~~~~~~--~~~-~~~i~~~~~~~~~~g~~   85 (221)
T cd06422          19 TRPKP--LVPVAGK--PLIDHALDRLAAAGI----RRIVVNTHHLA--DQIEAHLGD--SRF-GLRITISDEPDELLETG   85 (221)
T ss_pred             CCCCc--eeeECCE--EHHHHHHHHHHHCCC----CEEEEEccCCH--HHHHHHHhc--ccC-CceEEEecCCCcccccH
Confidence            34554  4555444  688888888876643    26666654332  222222222  112 2344444433 456888


Q ss_pred             HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHH
Q psy1766          92 RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPI  127 (214)
Q Consensus        92 ~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~  127 (214)
                      .+...|+.....+.++++.+|.....++.. ++...
T Consensus        86 ~~l~~~~~~~~~~~~lv~~~D~i~~~~~~~-~~~~~  120 (221)
T cd06422          86 GGIKKALPLLGDEPFLVVNGDILWDGDLAP-LLLLH  120 (221)
T ss_pred             HHHHHHHHhcCCCCEEEEeCCeeeCCCHHH-HHHHH
Confidence            888888888766889999999988877555 44444

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat

Probab=94.47  E-value=0.76  Score=36.17  Aligned_cols=96  Identities=15%  Similarity=0.171  Sum_probs=58.6

Q ss_pred             CCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcCCC
Q psy1766          25 NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGK  104 (214)
Q Consensus        25 n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd  104 (214)
                      +.. ..+..+++.+......+   +|+|+-+...  .  .+.+.++...   .+++++..+...+.+ ....+++....+
T Consensus        22 ~Gk-pli~~~i~~l~~~~~~~---~ivVv~~~~~--~--~~~i~~~~~~---~~v~~v~~~~~~~l~-~~~~~~~~~~~d   89 (233)
T cd02518          22 GGK-PLLEHLLDRLKRSKLID---EIVIATSTNE--E--DDPLEALAKK---LGVKVFRGSEEDVLG-RYYQAAEEYNAD   89 (233)
T ss_pred             CCc-cHHHHHHHHHHhCCCCC---eEEEECCCCc--c--cHHHHHHHHH---cCCeEEECCchhHHH-HHHHHHHHcCCC
Confidence            444 67888888876543223   7777655442  1  1233343333   256677655432222 223344445679


Q ss_pred             EEEEEcCCCc-cCcCchHHHHHHHhcCCC
Q psy1766         105 VLVFLDSHIE-VNTHWLEPLLVPIAERTN  132 (214)
Q Consensus       105 ~i~~lD~D~~-~~~~~l~~l~~~~~~~~~  132 (214)
                      +++++++|.. ++++.++++++.+..+..
T Consensus        90 ~vli~~~D~P~i~~~~i~~li~~~~~~~~  118 (233)
T cd02518          90 VVVRITGDCPLIDPEIIDAVIRLFLKSGA  118 (233)
T ss_pred             EEEEeCCCCCCCCHHHHHHHHHHHHhCCC
Confidence            9999999988 489999999998865433

Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.

>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional

Probab=94.45  E-value=0.99  Score=35.72  Aligned_cols=89  Identities=16%  Similarity=0.269  Sum_probs=49.4

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh--hcCCCEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK--YATGKVL  106 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~--~a~gd~i  106 (214)
                      ..|..+|+.+.+. ..   .+|+|+-+ .   +..    .++..++ +..+.+.......|.+........  ....+.+
T Consensus        28 pll~~~l~~l~~~-~i---~~ivvv~~-~---~~i----~~~~~~~-~~~v~~~~~~~~~gt~~~~~~~~~~~~~~~~~v   94 (245)
T PRK05450         28 PMIVRVYERASKA-GA---DRVVVATD-D---ERI----ADAVEAF-GGEVVMTSPDHPSGTDRIAEAAAKLGLADDDIV   94 (245)
T ss_pred             CHHHHHHHHHHhc-CC---CeEEEECC-c---HHH----HHHHHHc-CCEEEECCCcCCCchHHHHHHHHhcCCCCCCEE
Confidence            5777777777654 22   37776543 1   223    3333332 223333222333344433332212  2246889


Q ss_pred             EEEcCCC-ccCcCchHHHHHHHhcC
Q psy1766         107 VFLDSHI-EVNTHWLEPLLVPIAER  130 (214)
Q Consensus       107 ~~lD~D~-~~~~~~l~~l~~~~~~~  130 (214)
                      +++++|. .++++.+..+++.+..+
T Consensus        95 lv~~~D~Pli~~~~l~~li~~~~~~  119 (245)
T PRK05450         95 VNVQGDEPLIPPEIIDQVAEPLANP  119 (245)
T ss_pred             EEecCCCCCCCHHHHHHHHHHHhcC
Confidence            9999999 57899999999887654

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis

Probab=94.32  E-value=0.94  Score=37.07  Aligned_cols=104  Identities=13%  Similarity=0.129  Sum_probs=63.4

Q ss_pred             ceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC---CC-----
Q psy1766          16 STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS---KR-----   87 (214)
Q Consensus        16 ~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~---~~-----   87 (214)
                      .++||....|-. ..+..+|.|++.....+  +.+.|++|+.+  .+..+.+.+....+ +..+.++..+   ..     
T Consensus         2 ~~~iv~~~~~y~-~~~~~~i~Sil~n~~~~--~~fhii~d~~s--~~~~~~l~~~~~~~-~~~i~f~~i~~~~~~~~~~~   75 (280)
T cd06431           2 HVAIVCAGYNAS-RDVVTLVKSVLFYRRNP--LHFHLITDEIA--RRILATLFQTWMVP-AVEVSFYNAEELKSRVSWIP   75 (280)
T ss_pred             EEEEEEccCCcH-HHHHHHHHHHHHcCCCC--EEEEEEECCcC--HHHHHHHHHhcccc-CcEEEEEEhHHhhhhhccCc
Confidence            367777774444 89999999998876444  68888888776  45545554433332 3456665542   11     


Q ss_pred             -cchHH----HHHhhhhhc--CCCEEEEEcCCCccCcCchHHHHHH
Q psy1766          88 -EGLIR----ARMFGAKYA--TGKVLVFLDSHIEVNTHWLEPLLVP  126 (214)
Q Consensus        88 -~G~~~----a~n~g~~~a--~gd~i~~lD~D~~~~~~~l~~l~~~  126 (214)
                       ...+.    .|-..-+.-  .-+=++++|+|..+..+ |..|.+.
T Consensus        76 ~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~d-i~eL~~~  120 (280)
T cd06431          76 NKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATD-IAELWKI  120 (280)
T ss_pred             ccchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCC-HHHHHHH
Confidence             11111    122222322  36789999999988776 6666665

The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil

>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis

Probab=94.31  E-value=0.92  Score=36.14  Aligned_cols=115  Identities=10%  Similarity=0.108  Sum_probs=70.1

Q ss_pred             EEEEEEeCC-CchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCc--------
Q psy1766          18 SVIICFYNE-HPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKRE--------   88 (214)
Q Consensus        18 SVIIp~~n~-~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~--------   88 (214)
                      .|++.+-+. .+..+..++.|++..+...  ..+.|+.++-+  +...+.++++...+ ...++++..+...        
T Consensus         2 ~i~~~a~d~~y~~~~~v~i~Sl~~~~~~~--~~~~il~~~is--~~~~~~L~~~~~~~-~~~i~~~~~~~~~~~~~~~~~   76 (246)
T cd00505           2 AIVIVATGDEYLRGAIVLMKSVLRHRTKP--LRFHVLTNPLS--DTFKAALDNLRKLY-NFNYELIPVDILDSVDSEHLK   76 (246)
T ss_pred             eEEEEecCcchhHHHHHHHHHHHHhCCCC--eEEEEEEcccc--HHHHHHHHHHHhcc-CceEEEEeccccCcchhhhhc
Confidence            455556552 2588999999999877654  68888888765  56777777765533 3456665543111        


Q ss_pred             ---c-hHHHHHhhhhhcC-CCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEee
Q psy1766          89 ---G-LIRARMFGAKYAT-GKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPI  138 (214)
Q Consensus        89 ---G-~~~a~n~g~~~a~-gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~  138 (214)
                         . .+..|-...+... -+=|++||+|..+..+ +..+...-..+...++++.
T Consensus        77 ~~~~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~d-i~~L~~~~l~~~~~aav~d  130 (246)
T cd00505          77 RPIKIVTLTKLHLPNLVPDYDKILYVDADILVLTD-IDELWDTPLGGQELAAAPD  130 (246)
T ss_pred             CccccceeHHHHHHHHhhccCeEEEEcCCeeeccC-HHHHhhccCCCCeEEEccC
Confidence               0 0112222222233 6789999999988755 6666654334445555543

Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.

>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety

Probab=94.28  E-value=0.73  Score=35.76  Aligned_cols=100  Identities=7%  Similarity=0.115  Sum_probs=57.7

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc----CCCcchHHHHHhhhhhcC--
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT----SKREGLIRARMFGAKYAT--  102 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~----~~~~G~~~a~n~g~~~a~--  102 (214)
                      ..|..+++.+.+....+   +|+|+-+.    +...+.+    .++ +..+.+.+.    ....|...+...|++...  
T Consensus        27 pll~~~l~~l~~~~~~~---~IvV~~~~----~~i~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~   94 (223)
T cd02513          27 PLIAWTIEAALESKLFD---RVVVSTDD----EEIAEVA----RKY-GAEVPFLRPAELATDTASSIDVILHALDQLEEL   94 (223)
T ss_pred             cHHHHHHHHHHhCCCCC---EEEEECCc----HHHHHHH----HHh-CCCceeeCChHHCCCCCCcHHHHHHHHHHHHHh
Confidence            56777887776543332   66664321    2233332    222 111223332    112355666677776543  


Q ss_pred             ---CCEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEeeee
Q psy1766         103 ---GKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVPIID  140 (214)
Q Consensus       103 ---gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~~~~  140 (214)
                         .++++++++|.. +.++.+..+++.+.++...++.+...
T Consensus        95 ~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~  136 (223)
T cd02513          95 GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTE  136 (223)
T ss_pred             CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence               389999999987 58899999999886544445555443

CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.

>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial

Probab=94.21  E-value=0.76  Score=34.68  Aligned_cols=94  Identities=5%  Similarity=0.126  Sum_probs=60.9

Q ss_pred             CCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc--CCCcchHHHHHhhhhhcC
Q psy1766          25 NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT--SKREGLIRARMFGAKYAT  102 (214)
Q Consensus        25 n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~--~~~~G~~~a~n~g~~~a~  102 (214)
                      +.. ..+..+++.+...  .   .+|+|+-+...     ..    +...  ..+++++..  ....|...+...|++...
T Consensus        25 ~g~-pll~~~l~~l~~~--~---~~ivv~~~~~~-----~~----~~~~--~~~~~~i~~~~~~~~g~~~si~~al~~~~   87 (186)
T TIGR02665        25 GGK-PLIEHVLARLRPQ--V---SDLAISANRNP-----ER----YAQA--GFGLPVVPDALADFPGPLAGILAGLRWAG   87 (186)
T ss_pred             CCE-EHHHHHHHHHHhh--C---CEEEEEcCCCH-----HH----Hhhc--cCCCcEEecCCCCCCCCHHHHHHHHHhcC
Confidence            344 6777777777531  2   37777654321     11    1111  123455553  335788888988998888


Q ss_pred             CCEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEE
Q psy1766         103 GKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVT  135 (214)
Q Consensus       103 gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv  135 (214)
                      .++++++++|.. ++++.++.+++.+.++...++
T Consensus        88 ~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~  121 (186)
T TIGR02665        88 TDWVLTVPCDTPFLPEDLVARLAAALEASDADIA  121 (186)
T ss_pred             CCeEEEEecCCCcCCHHHHHHHHHHhhccCCcEE
Confidence            899999999984 699999999998865443333

In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.

>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins

Probab=94.18  E-value=0.64  Score=36.56  Aligned_cols=99  Identities=14%  Similarity=0.191  Sum_probs=58.8

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEE--EcCCCcchHHHHHhh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLY--RTSKREGLIRARMFG   97 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i--~~~~~~G~~~a~n~g   97 (214)
                      .+|..+.  ..+..+|.++.++...    +|+||-....  +...+.+.++..+   .++.++  ......|.+.+...|
T Consensus        25 llpv~g~--pli~~~l~~l~~~g~~----~v~iv~~~~~--~~~~~~l~~~~~~---~~~~i~~~~~~~~~G~~~al~~a   93 (233)
T cd06425          25 LVEFCNK--PMIEHQIEALAKAGVK----EIILAVNYRP--EDMVPFLKEYEKK---LGIKITFSIETEPLGTAGPLALA   93 (233)
T ss_pred             cCeECCc--chHHHHHHHHHHCCCc----EEEEEeeeCH--HHHHHHHhccccc---CCeEEEeccCCCCCccHHHHHHH
Confidence            4455554  5788888888776432    6666654433  3334444433112   234443  334567888888888


Q ss_pred             hhhcCC--CEEEEEcCCCccCcCchHHHHHHHhcC
Q psy1766          98 AKYATG--KVLVFLDSHIEVNTHWLEPLLVPIAER  130 (214)
Q Consensus        98 ~~~a~g--d~i~~lD~D~~~~~~~l~~l~~~~~~~  130 (214)
                      ....+.  +-++++.+|.....+ +..+++...+.
T Consensus        94 ~~~~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~  127 (233)
T cd06425          94 RDLLGDDDEPFFVLNSDVICDFP-LAELLDFHKKH  127 (233)
T ss_pred             HHHhccCCCCEEEEeCCEeeCCC-HHHHHHHHHHc
Confidence            877643  335666899877666 57777766543

GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.

>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase

Probab=94.15  E-value=0.92  Score=36.31  Aligned_cols=107  Identities=11%  Similarity=0.134  Sum_probs=63.7

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR   92 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~   92 (214)
                      ..||.  .+|.-+.  ..|...|.++.+.....   +|+||-....  +...+.+....... +..+.++......|.+.
T Consensus        20 ~~PK~--llpv~g~--plI~~~l~~l~~~~gi~---~i~iv~~~~~--~~i~~~l~~~~~~~-~~~i~~~~~~~~~Gt~~   89 (257)
T cd06428          20 DVPKP--LFPVAGK--PMIHHHIEACAKVPDLK---EVLLIGFYPE--SVFSDFISDAQQEF-NVPIRYLQEYKPLGTAG   89 (257)
T ss_pred             CCCcc--cCeECCe--eHHHHHHHHHHhcCCCc---EEEEEecCCH--HHHHHHHHhccccc-CceEEEecCCccCCcHH
Confidence            44554  5566555  57888888887643322   7777755433  33334443321111 23555555555678888


Q ss_pred             HHHhhhhhc---CCCEEEEEcCCCccCcCchHHHHHHHhcC
Q psy1766          93 ARMFGAKYA---TGKVLVFLDSHIEVNTHWLEPLLVPIAER  130 (214)
Q Consensus        93 a~n~g~~~a---~gd~i~~lD~D~~~~~~~l~~l~~~~~~~  130 (214)
                      |...+....   ..+.++++.+|.....+ +..+++...+.
T Consensus        90 al~~a~~~l~~~~~~~~lv~~gD~~~~~d-l~~~~~~h~~~  129 (257)
T cd06428          90 GLYHFRDQILAGNPSAFFVLNADVCCDFP-LQELLEFHKKH  129 (257)
T ss_pred             HHHHHHHHhhccCCCCEEEEcCCeecCCC-HHHHHHHHHHc
Confidence            776666554   24678889999886554 77888766543

N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre

>PLN03180 reversibly glycosylated polypeptide; Provisional

Probab=94.11  E-value=0.088  Score=43.63  Aligned_cols=40  Identities=20%  Similarity=0.157  Sum_probs=31.8

Q ss_pred             chHHHHHhhhhhcCCCEEEEEcCCCccCcC-------chHHHHHHHh
Q psy1766          89 GLIRARMFGAKYATGKVLVFLDSHIEVNTH-------WLEPLLVPIA  128 (214)
Q Consensus        89 G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~-------~l~~l~~~~~  128 (214)
                      ...++||.|.-.++.+|++++|+|+.+..+       ++++.+.-+.
T Consensus        80 ~~~a~R~fGyL~s~~~yivsiDDD~~Pa~d~~g~~i~~~~qH~~NL~  126 (346)
T PLN03180         80 KDSACRCFGYLVSKKKYIFTIDDDCFVAKDPSGKLINALEQHIKNLL  126 (346)
T ss_pred             CcccchhhhheeecceEEEEECCCCCCCCCCccccccHHHHHHHhcC
Confidence            345789999999999999999999998766       5665555554

>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional

Probab=94.11  E-value=1.7  Score=37.20  Aligned_cols=90  Identities=11%  Similarity=0.085  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcCCCEEEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVF  108 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~  108 (214)
                      ..+..+++.+.+...-.   +|+||-+...     .+..+.+...+  ..++++.  ...+...+...|++....+++++
T Consensus        34 Pll~~tl~~l~~~~~i~---~IvVVv~~~~-----~~~~~~~~~~~--~~v~~v~--gG~~r~~SV~~gL~~l~~d~VLV  101 (378)
T PRK09382         34 PLWLHVLENLSSAPAFK---EIVVVIHPDD-----IAYMKKALPEI--KFVTLVT--GGATRQESVRNALEALDSEYVLI  101 (378)
T ss_pred             eHHHHHHHHHhcCCCCC---eEEEEeChHH-----HHHHHHhcccC--CeEEEeC--CCchHHHHHHHHHHhcCCCeEEE
Confidence            57777888876544323   7777754322     23333332221  1244443  22345666777888777799999


Q ss_pred             EcCCCc-cCcCchHHHHHHHhcC
Q psy1766         109 LDSHIE-VNTHWLEPLLVPIAER  130 (214)
Q Consensus       109 lD~D~~-~~~~~l~~l~~~~~~~  130 (214)
                      .|+|-. ++++.++.+++.+.+.
T Consensus       102 hdadrPfv~~e~I~~li~~~~~~  124 (378)
T PRK09382        102 HDAARPFVPKELIDRLIEALDKA  124 (378)
T ss_pred             eeccccCCCHHHHHHHHHHhhcC
Confidence            999965 5889999999887653

>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional

Probab=94.08  E-value=1.3  Score=36.45  Aligned_cols=97  Identities=14%  Similarity=0.274  Sum_probs=62.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHh---hcCCCcEEEEEcCCCcchHHHHHh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVK---GLNNGRVHLYRTSKREGLIRARMF   96 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~---~~~~~~v~~i~~~~~~G~~~a~n~   96 (214)
                      .+|.++.  ..+...|.++.....    -+|+||-....    . +.++++..   ++ +.++.++..+...|.+.|...
T Consensus        28 Llpv~gk--PmI~~~l~~l~~aGi----~~I~ii~~~~~----~-~~~~~~l~~g~~~-g~~i~y~~q~~~~Gta~Al~~   95 (292)
T PRK15480         28 LLPIYDK--PMIYYPLSTLMLAGI----RDILIISTPQD----T-PRFQQLLGDGSQW-GLNLQYKVQPSPDGLAQAFII   95 (292)
T ss_pred             EeEECCE--EHHHHHHHHHHHCCC----CEEEEEecCCc----h-HHHHHHHcCcccc-CceeEEEECCCCCCHHHHHHH
Confidence            7888887  477777777776533    37876654332    1 22344332   22 346778877778899999998


Q ss_pred             hhhhcCC-CEEEEEcCCCccCcCchHHHHHHHhc
Q psy1766          97 GAKYATG-KVLVFLDSHIEVNTHWLEPLLVPIAE  129 (214)
Q Consensus        97 g~~~a~g-d~i~~lD~D~~~~~~~l~~l~~~~~~  129 (214)
                      |...... ++++++ +|..+...-+..+++...+
T Consensus        96 a~~~i~~~~~~lv~-gD~i~~~~~l~~ll~~~~~  128 (292)
T PRK15480         96 GEEFIGGDDCALVL-GDNIFYGHDLPKLMEAAVN  128 (292)
T ss_pred             HHHHhCCCCEEEEE-CCeeeeccCHHHHHHHHHh
Confidence            8887744 665555 6666655557888876643

>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC

Probab=94.04  E-value=0.62  Score=35.58  Aligned_cols=59  Identities=22%  Similarity=0.246  Sum_probs=45.5

Q ss_pred             cEEEEEcCCCcchHHHHHhhhhhcC--CCEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEee
Q psy1766          78 RVHLYRTSKREGLIRARMFGAKYAT--GKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVPI  138 (214)
Q Consensus        78 ~v~~i~~~~~~G~~~a~n~g~~~a~--gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~~  138 (214)
                      ++.++..+ ..|.+.+...|++++.  ++.++++-+|.. +.++.++++++.+++ .+.+++|.
T Consensus        65 ~v~~i~~~-~~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~~-~~~vi~p~  126 (195)
T TIGR03552        65 GAPVLRDP-GPGLNNALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAATE-GDVVIAPD  126 (195)
T ss_pred             CCEEEecC-CCCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCHHHHHHHHHhccc-CCEEEEec
Confidence            66777654 4599999999988753  468999999987 589999999987753 55667765

Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.

>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production

Probab=93.95  E-value=0.64  Score=36.02  Aligned_cols=107  Identities=14%  Similarity=0.175  Sum_probs=64.9

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK   99 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~   99 (214)
                      .++. +.. ..+..+++.+.......   +|+||-+...     .+....+........+.++..  ..|...+...|++
T Consensus        22 l~~i-~Gk-pll~~~i~~l~~~~~~~---~ivVv~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~si~~al~   89 (218)
T cd02516          22 FLEL-GGK-PVLEHTLEAFLAHPAID---EIVVVVPPDD-----IDLAKELAKYGLSKVVKIVEG--GATRQDSVLNGLK   89 (218)
T ss_pred             eeEE-CCe-EHHHHHHHHHhcCCCCC---EEEEEeChhH-----HHHHHHHHhcccCCCeEEECC--chHHHHHHHHHHH
Confidence            4444 445 68888888886543222   7777665432     122222111110124555443  2356777888888


Q ss_pred             hc---CCCEEEEEcCCCc-cCcCchHHHHHHHhcCCC-EEEEee
Q psy1766         100 YA---TGKVLVFLDSHIE-VNTHWLEPLLVPIAERTN-TVTVPI  138 (214)
Q Consensus       100 ~a---~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~-~vv~~~  138 (214)
                      +.   ..++++++++|.. ++++.++.+++.+.+... ..+.|.
T Consensus        90 ~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~  133 (218)
T cd02516          90 ALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGAAIPAVPV  133 (218)
T ss_pred             hcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEEEEec
Confidence            76   5789999999987 589999999998865443 444443

4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.

>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=93.90  E-value=1.2  Score=38.71  Aligned_cols=101  Identities=11%  Similarity=0.064  Sum_probs=61.2

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK   99 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~   99 (214)
                      .+|.-+ . ..|..+|+.+.....    .+|+|+-....  +.    +.++..+. ...+.++......|.+.+...+++
T Consensus        27 ll~v~g-k-pli~~~l~~l~~~gi----~~ivvv~~~~~--~~----i~~~~~~~-~~~~~~~~~~~~~G~~~sl~~a~~   93 (446)
T PRK14353         27 LHPVAG-R-PMLAHVLAAAASLGP----SRVAVVVGPGA--EA----VAAAAAKI-APDAEIFVQKERLGTAHAVLAARE   93 (446)
T ss_pred             cCEECC-c-hHHHHHHHHHHhCCC----CcEEEEECCCH--HH----HHHHhhcc-CCCceEEEcCCCCCcHHHHHHHHH
Confidence            344444 3 677888888766543    26666554322  22    33333322 123444444556787777777776


Q ss_pred             hcC--CCEEEEEcCCC-ccCcCchHHHHHHHhcCCCE
Q psy1766         100 YAT--GKVLVFLDSHI-EVNTHWLEPLLVPIAERTNT  133 (214)
Q Consensus       100 ~a~--gd~i~~lD~D~-~~~~~~l~~l~~~~~~~~~~  133 (214)
                      ...  .+.++++++|. .+.++.++.+++..++..+.
T Consensus        94 ~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~~~~~  130 (446)
T PRK14353         94 ALAGGYGDVLVLYGDTPLITAETLARLRERLADGADV  130 (446)
T ss_pred             HHhccCCCEEEEeCCcccCCHHHHHHHHHhHhcCCcE
Confidence            652  57788899998 67888999998866554443

>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional

Probab=93.77  E-value=1.7  Score=34.23  Aligned_cols=105  Identities=19%  Similarity=0.263  Sum_probs=63.4

Q ss_pred             CCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC--CCcEEEEEcCCCcchHHHHHhhhhhc-
Q psy1766          25 NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN--NGRVHLYRTSKREGLIRARMFGAKYA-  101 (214)
Q Consensus        25 n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~--~~~v~~i~~~~~~G~~~a~n~g~~~a-  101 (214)
                      +.. ..|..+++.+......+   +|+||-+...     ...++++..++.  ..+++++..  ..+...+.-.|++.. 
T Consensus        28 ~gk-pll~~~i~~~~~~~~~~---~ivVv~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~--g~~r~~sv~~gl~~~~   96 (230)
T PRK13385         28 VGE-PIFIHALRPFLADNRCS---KIIIVTQAQE-----RKHVQDLMKQLNVADQRVEVVKG--GTERQESVAAGLDRIG   96 (230)
T ss_pred             CCe-EHHHHHHHHHHcCCCCC---EEEEEeChhh-----HHHHHHHHHhcCcCCCceEEcCC--CchHHHHHHHHHHhcc
Confidence            344 68888888876544333   6777654322     223333333321  124555542  234456777777765 


Q ss_pred             CCCEEEEEcCCCcc-CcCchHHHHHHHhcC-CCEEEEeeee
Q psy1766         102 TGKVLVFLDSHIEV-NTHWLEPLLVPIAER-TNTVTVPIID  140 (214)
Q Consensus       102 ~gd~i~~lD~D~~~-~~~~l~~l~~~~~~~-~~~vv~~~~~  140 (214)
                      ..++++++|+|..+ +++.+.++++.+.++ ..+.+.|..+
T Consensus        97 ~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~~~~~~d  137 (230)
T PRK13385         97 NEDVILVHDGARPFLTQDIIDRLLEGVAKYGAAICAVEVKD  137 (230)
T ss_pred             CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEEEEeccc
Confidence            35788999999884 899999999988653 4455555544

>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=93.58  E-value=0.85  Score=35.19  Aligned_cols=85  Identities=13%  Similarity=0.208  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-CCcchHHHHHhhhhhcCCCEEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-KREGLIRARMFGAKYATGKVLV  107 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~G~~~a~n~g~~~a~gd~i~  107 (214)
                      ..+..+++.+...  ..   +|+||-...   +    ....+.    ..+++++... ...|...+...|++....++++
T Consensus        34 ~ll~~~i~~l~~~--~~---~ivvv~~~~---~----~~~~~~----~~~~~~i~~~~~~~G~~~si~~~l~~~~~~~vl   97 (200)
T PRK02726         34 PLLQRVARIAAAC--AD---EVYIITPWP---E----RYQSLL----PPGCHWLREPPPSQGPLVAFAQGLPQIKTEWVL   97 (200)
T ss_pred             eHHHHHHHHHHhh--CC---EEEEECCCH---H----HHHhhc----cCCCeEecCCCCCCChHHHHHHHHHhCCCCcEE
Confidence            6777777777532  12   666664321   1    222221    1256666543 3478899999999998889999


Q ss_pred             EEcCCCcc-CcCchHHHHHHHhc
Q psy1766         108 FLDSHIEV-NTHWLEPLLVPIAE  129 (214)
Q Consensus       108 ~lD~D~~~-~~~~l~~l~~~~~~  129 (214)
                      ++++|..+ +++.++.+++....
T Consensus        98 v~~~D~P~i~~~~i~~l~~~~~~  120 (200)
T PRK02726         98 LLACDLPRLTVDVLQEWLQQLEN  120 (200)
T ss_pred             EEeCCCCCCCHHHHHHHHHHhhc
Confidence            99999885 88999999998754

>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase

Probab=93.36  E-value=1.8  Score=33.89  Aligned_cols=101  Identities=13%  Similarity=0.117  Sum_probs=58.8

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR   92 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~   92 (214)
                      ..||.  .+|.-+.  ..+...|..+.+...    -+|+||-....  +...+.+.+.. ++ +..+.++......|.+.
T Consensus        20 ~~pK~--l~~i~g~--~li~~~l~~l~~~~~----~~i~vv~~~~~--~~~~~~~~~~~-~~-~~~i~~~~~~~~~g~~~   87 (236)
T cd04189          20 TRPKQ--LIPVAGK--PIIQYAIEDLREAGI----EDIGIVVGPTG--EEIKEALGDGS-RF-GVRITYILQEEPLGLAH   87 (236)
T ss_pred             CCCce--eeEECCc--chHHHHHHHHHHCCC----CEEEEEcCCCH--HHHHHHhcchh-hc-CCeEEEEECCCCCChHH
Confidence            34443  4555444  577788888776532    27776665433  23333333211 11 23566666555678888


Q ss_pred             HHHhhhhhcC-CCEEEEEcCCCccCcCchHHHHHHH
Q psy1766          93 ARMFGAKYAT-GKVLVFLDSHIEVNTHWLEPLLVPI  127 (214)
Q Consensus        93 a~n~g~~~a~-gd~i~~lD~D~~~~~~~l~~l~~~~  127 (214)
                      +...|..... .++ +++.+|..+..+. ..++...
T Consensus        88 sl~~a~~~i~~~~~-li~~~D~~~~~~~-~~~~~~~  121 (236)
T cd04189          88 AVLAARDFLGDEPF-VVYLGDNLIQEGI-SPLVRDF  121 (236)
T ss_pred             HHHHHHHhcCCCCE-EEEECCeecCcCH-HHHHHHH
Confidence            8888888765 455 5578888887664 4455544

This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in

>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan

Probab=93.13  E-value=0.19  Score=41.92  Aligned_cols=58  Identities=16%  Similarity=0.088  Sum_probs=47.8

Q ss_pred             CcchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHh----cCCCEEEEeeeeeecC
Q psy1766          87 REGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIA----ERTNTVTVPIIDIINA  144 (214)
Q Consensus        87 ~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~~~  144 (214)
                      -+-....||.|+..|+.+|++.+|.|..+.++.-+.+.+.+.    ....+.|+|.++.-..
T Consensus       112 ~YPiN~LRNvAr~~a~T~~v~~~DvD~~ps~~l~~~l~~~~~~~~~~~~~a~VvPaFE~~~~  173 (317)
T PF13896_consen  112 LYPINLLRNVARSGARTDYVFLLDVDFLPSPGLYEKLLRFARRNIDKSKTAFVVPAFETREG  173 (317)
T ss_pred             CCChHHHHHHHHHhcCcceEEEecceeeeCcchHHHHHHHhhhhccCCceEEEEeeeecccC
Confidence            455778999999999999999999999999998888777663    3567788899886543

>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose

Probab=93.02  E-value=3.7  Score=33.37  Aligned_cols=92  Identities=14%  Similarity=0.165  Sum_probs=58.6

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR   92 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~   92 (214)
                      ..||-  .+|..+.. ..|..+++.+.......   +|+||-+..     -.+.+++..... ...+.++..+...|.+.
T Consensus        21 ~~PK~--ll~l~g~~-~li~~~l~~l~~~~~~~---~i~vvt~~~-----~~~~v~~~l~~~-~~~~~ii~ep~~~gTa~   88 (274)
T cd02509          21 SYPKQ--FLKLFGDK-SLLQQTLDRLKGLVPPD---RILVVTNEE-----YRFLVREQLPEG-LPEENIILEPEGRNTAP   88 (274)
T ss_pred             CCCce--EeEcCCCC-cHHHHHHHHHhcCCCCC---cEEEEechH-----HHHHHHHHHhhc-CCCceEEECCCCCCcHH
Confidence            45554  56666656 78888999887654333   777776532     122344333321 24677776666778888


Q ss_pred             HHHhhhhhcC----CCEEEEEcCCCccC
Q psy1766          93 ARMFGAKYAT----GKVLVFLDSHIEVN  116 (214)
Q Consensus        93 a~n~g~~~a~----gd~i~~lD~D~~~~  116 (214)
                      |.-.++....    .++++++.+|..+.
T Consensus        89 ai~~a~~~~~~~~~~~~vlVl~~D~~i~  116 (274)
T cd02509          89 AIALAALYLAKRDPDAVLLVLPSDHLIE  116 (274)
T ss_pred             HHHHHHHHHHhcCCCCeEEEecchhccc
Confidence            7777766543    57899999998875

GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.

>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=92.81  E-value=1.3  Score=38.65  Aligned_cols=97  Identities=14%  Similarity=0.121  Sum_probs=63.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK   99 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~   99 (214)
                      ++|..+.  ..+...|+++.+...    .+++++-....  +    .+.++..+.  ..+.++......|.+.+...|++
T Consensus        25 l~pi~g~--pli~~~l~~l~~~gi----~~iiiv~~~~~--~----~i~~~~~~~--~~i~~~~~~~~~Gt~~al~~a~~   90 (459)
T PRK14355         25 MHPLAGR--PMVSWPVAAAREAGA----GRIVLVVGHQA--E----KVREHFAGD--GDVSFALQEEQLGTGHAVACAAP   90 (459)
T ss_pred             eceeCCc--cHHHHHHHHHHhcCC----CeEEEEECCCH--H----HHHHHhccC--CceEEEecCCCCCHHHHHHHHHH
Confidence            5565554  577778888765432    26666554332  1    223332221  36777666667788888888887


Q ss_pred             hcC--CCEEEEEcCCC-ccCcCchHHHHHHHhcC
Q psy1766         100 YAT--GKVLVFLDSHI-EVNTHWLEPLLVPIAER  130 (214)
Q Consensus       100 ~a~--gd~i~~lD~D~-~~~~~~l~~l~~~~~~~  130 (214)
                      ...  .+.++++++|. .+.+..+..+++.+.+.
T Consensus        91 ~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~  124 (459)
T PRK14355         91 ALDGFSGTVLILCGDVPLLRAETLQGMLAAHRAT  124 (459)
T ss_pred             HhhccCCcEEEEECCccCcCHHHHHHHHHHHHhc
Confidence            764  47899999998 56788899999877544

>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=92.73  E-value=3.3  Score=32.08  Aligned_cols=103  Identities=13%  Similarity=0.191  Sum_probs=62.7

Q ss_pred             CCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhc-CC
Q psy1766          25 NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA-TG  103 (214)
Q Consensus        25 n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a-~g  103 (214)
                      +.. ..+..+++.+......   .+|+||-+...     .+.+.......  ..+.++...  .+...+...|++.. ..
T Consensus        25 ~gk-pll~~~l~~l~~~~~~---~~ivVv~~~~~-----~~~~~~~~~~~--~~~~~~~~~--~~~~~sl~~~l~~~~~~   91 (217)
T TIGR00453        25 GGR-PLLEHTLDAFLAHPAI---DEVVVVVSPED-----QEFFQKYLVAR--AVPKIVAGG--DTRQDSVRNGLKALKDA   91 (217)
T ss_pred             CCe-EHHHHHHHHHhcCCCC---CEEEEEEChHH-----HHHHHHHhhcC--CcEEEeCCC--chHHHHHHHHHHhCCCC
Confidence            445 6888888888654222   37777765321     12222222211  234444322  24556777788776 67


Q ss_pred             CEEEEEcCCCc-cCcCchHHHHHHHhcCCC-EEEEeeee
Q psy1766         104 KVLVFLDSHIE-VNTHWLEPLLVPIAERTN-TVTVPIID  140 (214)
Q Consensus       104 d~i~~lD~D~~-~~~~~l~~l~~~~~~~~~-~vv~~~~~  140 (214)
                      ++++++++|.. ++++.+..+++.+.++.. ..++|..+
T Consensus        92 d~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~  130 (217)
T TIGR00453        92 EWVLVHDAARPFVPKELLDRLLEALRKAGAAILALPVAD  130 (217)
T ss_pred             CEEEEccCccCCCCHHHHHHHHHHHhhCCcEEEeEeccc
Confidence            89999999986 689999999998865433 44454433

Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.

>COG2068 Uncharacterized MobA-related protein [General function prediction only]

Probab=92.23  E-value=3.7  Score=31.74  Aligned_cols=104  Identities=17%  Similarity=0.194  Sum_probs=71.3

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-CCcchHHHHHhhhhhcCCC--E
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-KREGLIRARMFGAKYATGK--V  105 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~G~~~a~n~g~~~a~gd--~  105 (214)
                      .-+..+++..++...    .++|||--.-     ..+........   .+++++.++ ...|.+.....|++++.++  .
T Consensus        32 plv~~~~~~a~~a~~----~~vivV~g~~-----~~~~~~a~~~~---~~~~~v~npd~~~Gls~Sl~ag~~a~~~~~~~   99 (199)
T COG2068          32 PLVRASAETALSAGL----DRVIVVTGHR-----VAEAVEALLAQ---LGVTVVVNPDYAQGLSTSLKAGLRAADAEGDG   99 (199)
T ss_pred             cHHHHHHHHHHhcCC----CeEEEEeCcc-----hhhHHHhhhcc---CCeEEEeCcchhhhHhHHHHHHHHhcccCCCe
Confidence            456666666655333    3777776543     22233333332   478888765 4789999999999999765  9


Q ss_pred             EEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEeeeeeecCC
Q psy1766         106 LVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVPIIDIINAD  145 (214)
Q Consensus       106 i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~  145 (214)
                      ++++-+|.- +.++.+.+++..+.... .++.|......+.
T Consensus       100 v~~~lgDmP~V~~~t~~rl~~~~~~~~-~~v~p~~~g~rG~  139 (199)
T COG2068         100 VVLMLGDMPQVTPATVRRLIAAFRARG-AAVRPVYGGARGH  139 (199)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhccccC-ceeeeeccCCcCC
Confidence            999999987 79999999999997664 5666655444333

>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=92.22  E-value=2.5  Score=36.71  Aligned_cols=99  Identities=13%  Similarity=0.077  Sum_probs=61.8

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK   99 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~   99 (214)
                      .+|.-+ . ..|..+|+++.+....    +++||-....  +    .++++..+.  ..++++..+...|.+.+...+++
T Consensus        23 ll~v~g-k-pli~~~l~~l~~~g~~----~iivvv~~~~--~----~i~~~~~~~--~~i~~v~~~~~~G~~~sv~~~~~   88 (450)
T PRK14360         23 LHPLGG-K-SLVERVLDSCEELKPD----RRLVIVGHQA--E----EVEQSLAHL--PGLEFVEQQPQLGTGHAVQQLLP   88 (450)
T ss_pred             cCEECC-h-hHHHHHHHHHHhCCCC----eEEEEECCCH--H----HHHHHhccc--CCeEEEEeCCcCCcHHHHHHHHH
Confidence            444433 4 6788888888765432    5555544322  1    233333332  35777765556677777777776


Q ss_pred             hcC--CCEEEEEcCCCc-cCcCchHHHHHHHhcCCC
Q psy1766         100 YAT--GKVLVFLDSHIE-VNTHWLEPLLVPIAERTN  132 (214)
Q Consensus       100 ~a~--gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~  132 (214)
                      ...  .+.++++++|.. +.+..++.+++.+.+...
T Consensus        89 ~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~  124 (450)
T PRK14360         89 VLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSSNA  124 (450)
T ss_pred             HhhccCCcEEEEeCCccccCHHHHHHHHHHHHhcCC
Confidence            653  356788999984 688889999988765443

>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule

Probab=92.22  E-value=3.3  Score=32.33  Aligned_cols=106  Identities=13%  Similarity=0.117  Sum_probs=60.4

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEE-EcCCCcchH
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLY-RTSKREGLI   91 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i-~~~~~~G~~   91 (214)
                      ..||-  .+|..+.  ..+..+|+++.++. -   -+++||-....   .....+.+..... ..++.++ ......|.+
T Consensus        18 ~~pK~--ll~i~g~--pli~~~l~~l~~~g-~---~~ivvv~~~~~---~~~~~~~~~~~~~-~~~~~i~~~~~~~~g~~   85 (231)
T cd04183          18 TYPKP--LIEVDGK--PMIEWVIESLAKIF-D---SRFIFICRDEH---NTKFHLDESLKLL-APNATVVELDGETLGAA   85 (231)
T ss_pred             CCCce--eeEECCE--EHHHHHHHhhhccC-C---ceEEEEEChHH---hhhhhHHHHHHHh-CCCCEEEEeCCCCCcHH
Confidence            44553  4566554  58888888887654 2   26666654221   2222222222111 1234333 224577888


Q ss_pred             HHHHhhhhhcC-CCEEEEEcCCCccCcCchHHHHHHHhcC
Q psy1766          92 RARMFGAKYAT-GKVLVFLDSHIEVNTHWLEPLLVPIAER  130 (214)
Q Consensus        92 ~a~n~g~~~a~-gd~i~~lD~D~~~~~~~l~~l~~~~~~~  130 (214)
                      .+.-.|..... .+.++++.+|..+..+....+..+...+
T Consensus        86 ~~l~~a~~~l~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~  125 (231)
T cd04183          86 CTVLLAADLIDNDDPLLIFNCDQIVESDLLAFLAAFRERD  125 (231)
T ss_pred             HHHHHHHhhcCCCCCEEEEecceeeccCHHHHHHHhhccC
Confidence            88888888764 4778889999988877655444333333

GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.

>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=92.14  E-value=0.67  Score=36.14  Aligned_cols=69  Identities=13%  Similarity=0.112  Sum_probs=40.3

Q ss_pred             cEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc--CCC-------cc---hHHHHHhhhhhcC-------CCEEEE
Q psy1766          48 HEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT--SKR-------EG---LIRARMFGAKYAT-------GKVLVF  108 (214)
Q Consensus        48 ~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~--~~~-------~G---~~~a~n~g~~~a~-------gd~i~~  108 (214)
                      .-.|||+|++..    .+.+.++.++.   ++.+.+.  +..       ..   ....||.|++..+       .-+|.|
T Consensus        11 l~WIVVEd~~~~----~~~v~~lL~~s---gl~y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyF   83 (207)
T PF03360_consen   11 LHWIVVEDSEET----TPLVARLLRRS---GLPYTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDGVVYF   83 (207)
T ss_dssp             EEEEEEESSSS------HHHHHHHHHH---TSEEEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-EEEEE
T ss_pred             eEEEEEeCCCCC----CHHHHHHHHHc---CCceeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCcEEEE
Confidence            589999999863    33444444443   4444332  221       11   1458999998765       357889


Q ss_pred             EcCCCccCcCchHHH
Q psy1766         109 LDSHIEVNTHWLEPL  123 (214)
Q Consensus       109 lD~D~~~~~~~l~~l  123 (214)
                      .|+|..++...+++|
T Consensus        84 aDDdNtYdl~LF~em   98 (207)
T PF03360_consen   84 ADDDNTYDLRLFDEM   98 (207)
T ss_dssp             --TTSEE-HHHHHHH
T ss_pred             CCCCCeeeHHHHHHH
Confidence            999999998888773

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.

>PLN02189 cellulose synthase

Probab=91.99  E-value=0.59  Score=44.49  Aligned_cols=98  Identities=12%  Similarity=0.158  Sum_probs=64.2

Q ss_pred             hHHHHHHHHHH--hcCCCCCccEEEEEECCCCC----CCChHHHHHHHHhhc--------CCCcEEEEEcCCCcc-----
Q psy1766          29 ATLYRSVQTLL--SRTGQSLLHEIILVNDFSEY----PSNLHGEVETFVKGL--------NNGRVHLYRTSKREG-----   89 (214)
Q Consensus        29 ~~l~~~l~sl~--~q~~~~~~~eiivVdd~s~~----~d~t~~~~~~~~~~~--------~~~~v~~i~~~~~~G-----   89 (214)
                      +.++..++.+.  .+..+.   |--+.+||+.-    ..+-..+++-+....        .-|.+.|+..+++.|     
T Consensus       439 Ee~kvRI~~l~a~~~~~p~---~~~~m~dGt~W~g~~~~dHp~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~  515 (1040)
T PLN02189        439 EEFKVRINAIVAKAQKVPP---EGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHK  515 (1040)
T ss_pred             HHHHHHHHHHHhhcCccCC---ccceeccCccCCCCCCCCCHHHHHHHhcCCCCccccccccceeEEEeccCCCCCCccc
Confidence            55666777765  233433   44567888710    022333444333311        014588888777666     


Q ss_pred             hHHHHHhhhh----hcCCCEEEEEcCCCccC-cCchHHHHHHHhc
Q psy1766          90 LIRARMFGAK----YATGKVLVFLDSHIEVN-THWLEPLLVPIAE  129 (214)
Q Consensus        90 ~~~a~n~g~~----~a~gd~i~~lD~D~~~~-~~~l~~l~~~~~~  129 (214)
                      +++|+|..++    .++|+||+.+|.|..+. +..+.+.+-.+..
T Consensus       516 KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflD  560 (1040)
T PLN02189        516 KAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMD  560 (1040)
T ss_pred             chhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcC
Confidence            7999999994    45899999999999985 5999998887743

>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form

Probab=91.75  E-value=2  Score=35.18  Aligned_cols=101  Identities=15%  Similarity=0.250  Sum_probs=62.2

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhh---cCCCcEEEEEcCCCcc
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKG---LNNGRVHLYRTSKREG   89 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~---~~~~~v~~i~~~~~~G   89 (214)
                      ..||-  .+|.++.  ..+...|..+.....    -+|+||-....     .+.++++...   + +.++.++..+...|
T Consensus        19 ~~pK~--Llpv~gk--PmI~~~L~~l~~aGi----~~I~iv~~~~~-----~~~~~~~lg~g~~~-g~~i~~~~q~~~~G   84 (286)
T TIGR01207        19 AVSKQ--LLPIYDK--PMIYYPLSTLMLAGI----RDILIISTPQD-----TPRFQQLLGDGSQW-GVNLSYAVQPSPDG   84 (286)
T ss_pred             CCCce--eeEECCE--EhHHHHHHHHHHCCC----CEEEEEecCCc-----HHHHHHHhcccccc-CceEEEEEccCCCC
Confidence            34443  7788886  477777777766543    27776653222     1233333321   2 33567777667889


Q ss_pred             hHHHHHhhhhhcCC-CEEEEEcCCCccCcCchHHHHHHHh
Q psy1766          90 LIRARMFGAKYATG-KVLVFLDSHIEVNTHWLEPLLVPIA  128 (214)
Q Consensus        90 ~~~a~n~g~~~a~g-d~i~~lD~D~~~~~~~l~~l~~~~~  128 (214)
                      .+.|.-.|...... +++++ -+|..+...-+..+++...
T Consensus        85 ta~al~~a~~~l~~~~~~li-~gD~i~~~~~l~~ll~~~~  123 (286)
T TIGR01207        85 LAQAFIIGEDFIGGDPSALV-LGDNIFYGHDLSDLLKRAA  123 (286)
T ss_pred             HHHHHHHHHHHhCCCCEEEE-ECCEeccccCHHHHHHHHH
Confidence            99999999888754 55555 4776665566777777653

This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.

>TIGR03584 PseF pseudaminic acid CMP-transferase

Probab=91.74  E-value=2.8  Score=33.00  Aligned_cols=101  Identities=8%  Similarity=0.073  Sum_probs=60.6

Q ss_pred             CCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc----CCCcchHHHHHhhhhh
Q psy1766          25 NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT----SKREGLIRARMFGAKY  100 (214)
Q Consensus        25 n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~----~~~~G~~~a~n~g~~~  100 (214)
                      +.. ..+..+++.+.+....+   +|+|+-|.    +..    .+.+.++ +..+.+.+.    ....|...+...|++.
T Consensus        22 ~Gk-pLi~~ti~~a~~s~~~d---~IvVstd~----~~i----~~~a~~~-g~~v~~~r~~~l~~d~~~~~~si~~~l~~   88 (222)
T TIGR03584        22 CGK-PMIAYSIEAALNSGLFD---KVVVSTDD----EEI----AEVAKSY-GASVPFLRPKELADDFTGTAPVVKHAIEE   88 (222)
T ss_pred             CCc-CHHHHHHHHHHhCCCCC---EEEEeCCC----HHH----HHHHHHc-CCEeEEeChHHHcCCCCCchHHHHHHHHH
Confidence            344 67888888887655433   55553221    222    3333333 222333322    2245666777777765


Q ss_pred             c----CCCEEEEEcCCCcc-CcCchHHHHHHHhcCCCEEEEee
Q psy1766         101 A----TGKVLVFLDSHIEV-NTHWLEPLLVPIAERTNTVTVPI  138 (214)
Q Consensus       101 a----~gd~i~~lD~D~~~-~~~~l~~l~~~~~~~~~~vv~~~  138 (214)
                      .    ..++++++++|..+ .++.+.++++.+.++....++++
T Consensus        89 l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv  131 (222)
T TIGR03584        89 LKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSV  131 (222)
T ss_pred             HhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEe
Confidence            4    36999999999985 78999999999876534444443

The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.

>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]

Probab=91.68  E-value=4.9  Score=31.92  Aligned_cols=104  Identities=13%  Similarity=0.180  Sum_probs=66.5

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcC---CCE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYAT---GKV  105 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~---gd~  105 (214)
                      .-+..+|+.++....-   .+|||+-+...  +.   .++++.....+.++.++..  ..........|++...   .++
T Consensus        33 pll~~tl~~f~~~~~i---~~Ivvv~~~~~--~~---~~~~~~~~~~~~~v~~v~G--G~~R~~SV~~gL~~~~~~~~~~  102 (230)
T COG1211          33 PLLEHTLEAFLESPAI---DEIVVVVSPED--DP---YFEKLPKLSADKRVEVVKG--GATRQESVYNGLQALSKYDSDW  102 (230)
T ss_pred             EehHHHHHHHHhCcCC---CeEEEEEChhh--hH---HHHHhhhhccCCeEEEecC--CccHHHHHHHHHHHhhccCCCE
Confidence            5678888888765553   48998887755  23   2333321111356777763  3345556666777765   799


Q ss_pred             EEEEcCCCc-cCcCchHHHHHHHh-cCCCEEEEeeeeee
Q psy1766         106 LVFLDSHIE-VNTHWLEPLLVPIA-ERTNTVTVPIIDII  142 (214)
Q Consensus       106 i~~lD~D~~-~~~~~l~~l~~~~~-~~~~~vv~~~~~~~  142 (214)
                      |++-|+--- ++++.+.+++.... .+..+.+.|..|.+
T Consensus       103 VlvHDaaRPf~~~~~i~~li~~~~~~~aai~alpv~DTi  141 (230)
T COG1211         103 VLVHDAARPFLTPKLIKRLIELADKYGAAILALPVTDTL  141 (230)
T ss_pred             EEEeccccCCCCHHHHHHHHHhhccCCcEEEEeeccCcE
Confidence            999998544 57888999985544 34556667777665

>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface

Probab=91.62  E-value=4.3  Score=32.22  Aligned_cols=113  Identities=12%  Similarity=0.189  Sum_probs=67.0

Q ss_pred             EEEEEeCCC-chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCC----------
Q psy1766          19 VIICFYNEH-PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKR----------   87 (214)
Q Consensus        19 VIIp~~n~~-~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~----------   87 (214)
                      |++.+ |.. +..+..++.|++...... .+.+.|+.++-+  +...+.++++.... ...++++..+..          
T Consensus         3 I~~~~-d~~y~~~~~~~l~Sl~~~~~~~-~~~~~il~~~is--~~~~~~L~~~~~~~-~~~i~~~~i~~~~~~~~~~~~~   77 (248)
T cd04194           3 IVFAI-DDNYAPYLAVTIKSILANNSKR-DYDFYILNDDIS--EENKKKLKELLKKY-NSSIEFIKIDNDDFKFFPATTD   77 (248)
T ss_pred             EEEEe-cHhhHHHHHHHHHHHHhcCCCC-ceEEEEEeCCCC--HHHHHHHHHHHHhc-CCeEEEEEcCHHHHhcCCcccc
Confidence            34444 433 688889999998866532 268888888766  67788888876653 356666554211          


Q ss_pred             -cc-hHHHHHhhhhhc-CCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEe
Q psy1766          88 -EG-LIRARMFGAKYA-TGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP  137 (214)
Q Consensus        88 -~G-~~~a~n~g~~~a-~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~  137 (214)
                       .. ...+|-...+.- ..+-++++|+|..+..+ +..+...-.++...++++
T Consensus        78 ~~~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~d-i~~L~~~~~~~~~~aa~~  129 (248)
T cd04194          78 HISYATYYRLLIPDLLPDYDKVLYLDADIIVLGD-LSELFDIDLGDNLLAAVR  129 (248)
T ss_pred             cccHHHHHHHHHHHHhcccCEEEEEeCCEEecCC-HHHHhcCCcCCCEEEEEe
Confidence             00 112222333333 37889999999988765 555554311333444444

The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys

>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]

Probab=91.50  E-value=3.8  Score=34.76  Aligned_cols=98  Identities=15%  Similarity=0.146  Sum_probs=72.5

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhh--cCCCcEEEEEcCCCcchHHHHHhh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKG--LNNGRVHLYRTSKREGLIRARMFG   97 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~--~~~~~v~~i~~~~~~G~~~a~n~g   97 (214)
                      .+|.-|.+  .|...|+++.++..    .|++++-.      ...+.++++...  ..+.++.++......|.+.+.-.+
T Consensus        26 llpI~gkP--ii~~~l~~L~~~Gv----~eivi~~~------y~~~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l~~a   93 (358)
T COG1208          26 LLPIAGKP--LIEYVLEALAAAGV----EEIVLVVG------YLGEQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNA   93 (358)
T ss_pred             cceeCCcc--HHHHHHHHHHHCCC----cEEEEEec------cchHHHHHHHhcccccCCceEEEecCCcCccHHHHHHH
Confidence            56666764  78888888877554    27777732      233344444433  114688888888889999999999


Q ss_pred             hhhcCCCEEEEEcCCCccCcCchHHHHHHHhcC
Q psy1766          98 AKYATGKVLVFLDSHIEVNTHWLEPLLVPIAER  130 (214)
Q Consensus        98 ~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~  130 (214)
                      .....++-++++.+|...+-+ +..+++..++.
T Consensus        94 ~~~l~~~~f~v~~GDv~~~~d-l~~l~~~~~~~  125 (358)
T COG1208          94 LDLLGGDDFLVLNGDVLTDLD-LSELLEFHKKK  125 (358)
T ss_pred             HHhcCCCcEEEEECCeeeccC-HHHHHHHHHhc
Confidence            999887888999999999988 99999888665

>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=91.19  E-value=1.3  Score=34.64  Aligned_cols=111  Identities=12%  Similarity=0.075  Sum_probs=59.5

Q ss_pred             EEEeCCC-chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCC------------
Q psy1766          21 ICFYNEH-PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKR------------   87 (214)
Q Consensus        21 Ip~~n~~-~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~------------   87 (214)
                      +-+.|.. +..+..++.|++..+..+....+++++++.+  +...+.+++...+.  ..+..+.....            
T Consensus         3 ~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~--~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   78 (250)
T PF01501_consen    3 VLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDIS--EEDFEKLRALAAEV--IEIEPIEFPDISMLEEFQFNSPS   78 (250)
T ss_dssp             EEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS---HHHHHHHHHHSCCC--CTTECEEETSGGHHH--TTS-HC
T ss_pred             EEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCC--HHHHHHHhhhcccc--cceeeeccchHHhhhhhhhcccc
Confidence            3344444 5777888999988877422267888888776  55666666554443  12222221111            


Q ss_pred             ---c-chHHHHHhhhhh-cCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766          88 ---E-GLIRARMFGAKY-ATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus        88 ---~-G~~~a~n~g~~~-a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~  136 (214)
                         . ....++-...+. ...+-++++|+|..+..+ +..+...-.++...+++
T Consensus        79 ~~~~~~~~~~rl~i~~ll~~~drilyLD~D~lv~~d-l~~lf~~~~~~~~~~a~  131 (250)
T PF01501_consen   79 KRHFSPATFARLFIPDLLPDYDRILYLDADTLVLGD-LDELFDLDLQGKYLAAV  131 (250)
T ss_dssp             CTCGGGGGGGGGGHHHHSTTSSEEEEE-TTEEESS--SHHHHC---TTSSEEEE
T ss_pred             cccccHHHHHHhhhHHHHhhcCeEEEEcCCeeeecC-hhhhhcccchhhhcccc
Confidence               0 111222233344 567999999999998655 55555533334444444

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....

>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=91.11  E-value=4.8  Score=35.50  Aligned_cols=104  Identities=13%  Similarity=0.131  Sum_probs=64.3

Q ss_pred             CCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHH
Q psy1766          14 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRA   93 (214)
Q Consensus        14 ~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a   93 (214)
                      .||.  .+|..+.  ..|..+|+++.+...    .+++|+-....  +    .+.++.... ...+.++..+...|.+.+
T Consensus        22 ~pK~--llpi~gk--pli~~~l~~l~~~g~----~~iivvv~~~~--~----~i~~~~~~~-~~~~~~~~~~~~~Gt~~s   86 (482)
T PRK14352         22 TPKV--LHTLAGR--SMLGHVLHAAAGLAP----QHLVVVVGHDR--E----RVAPAVAEL-APEVDIAVQDEQPGTGHA   86 (482)
T ss_pred             CCce--eceeCCc--cHHHHHHHHHHhcCC----CcEEEEECCCH--H----HHHHHhhcc-CCccEEEeCCCCCCcHHH
Confidence            4554  4555554  578888888776533    26665544322  2    222222221 124555555666787888


Q ss_pred             HHhhhhhcC---CCEEEEEcCCC-ccCcCchHHHHHHHhcCCC
Q psy1766          94 RMFGAKYAT---GKVLVFLDSHI-EVNTHWLEPLLVPIAERTN  132 (214)
Q Consensus        94 ~n~g~~~a~---gd~i~~lD~D~-~~~~~~l~~l~~~~~~~~~  132 (214)
                      .-.|+++..   .+.++++++|. .+.+..+.++++...+...
T Consensus        87 i~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~  129 (482)
T PRK14352         87 VQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGN  129 (482)
T ss_pred             HHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCC
Confidence            888887753   36888999998 4688889999987755443

>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide

Probab=91.02  E-value=5.1  Score=31.45  Aligned_cols=94  Identities=11%  Similarity=0.162  Sum_probs=54.3

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC--CCcchHHHHHhh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS--KREGLIRARMFG   97 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~--~~~G~~~a~n~g   97 (214)
                      .+|..+ . ..|...|+.+.+....   .+|+|+-+  .  +    .+.++..++   ++.++...  ...|.+. .-.+
T Consensus        20 l~~i~g-k-pll~~~l~~l~~~~~i---~~ivvv~~--~--~----~i~~~~~~~---~~~~~~~~~~~~~gt~~-~~~~   82 (239)
T cd02517          20 LADIAG-K-PMIQHVYERAKKAKGL---DEVVVATD--D--E----RIADAVESF---GGKVVMTSPDHPSGTDR-IAEV   82 (239)
T ss_pred             CcccCC-c-CHHHHHHHHHHhCCCC---CEEEEECC--c--H----HHHHHHHHc---CCEEEEcCcccCchhHH-HHHH
Confidence            344434 3 5777778777654222   27777632  1  2    333333333   34444332  2335443 3334


Q ss_pred             hhhcCC--CEEEEEcCCC-ccCcCchHHHHHHHhcC
Q psy1766          98 AKYATG--KVLVFLDSHI-EVNTHWLEPLLVPIAER  130 (214)
Q Consensus        98 ~~~a~g--d~i~~lD~D~-~~~~~~l~~l~~~~~~~  130 (214)
                      ++....  +.++++++|. .+++..+..+++.+.++
T Consensus        83 ~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~  118 (239)
T cd02517          83 AEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDD  118 (239)
T ss_pred             HHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhC
Confidence            444444  8899999998 67889999999877554

CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.

>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase

Probab=91.02  E-value=2.6  Score=36.54  Aligned_cols=96  Identities=13%  Similarity=0.104  Sum_probs=62.6

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK   99 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~   99 (214)
                      ++|.-+.  ..|..+|+.+.+...    .+++|+-....      +.++++..++   .+.++......|.+.+...|+.
T Consensus        22 l~~i~gk--pli~~~l~~l~~~g~----~~iiiv~~~~~------~~i~~~~~~~---~i~~~~~~~~~G~~~ai~~a~~   86 (451)
T TIGR01173        22 LHPLAGK--PMLEHVIDAARALGP----QKIHVVYGHGA------EQVRKALANR---DVNWVLQAEQLGTGHAVLQALP   86 (451)
T ss_pred             hceeCCc--cHHHHHHHHHHhCCC----CeEEEEECCCH------HHHHHHhcCC---CcEEEEcCCCCchHHHHHHHHH
Confidence            4555444  678888888766443    26666544322      2234433332   5666655556788888888887


Q ss_pred             hcC-CCEEEEEcCCC-ccCcCchHHHHHHHhcC
Q psy1766         100 YAT-GKVLVFLDSHI-EVNTHWLEPLLVPIAER  130 (214)
Q Consensus       100 ~a~-gd~i~~lD~D~-~~~~~~l~~l~~~~~~~  130 (214)
                      ... .+.++++++|. .+.+..+..+++...+.
T Consensus        87 ~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~  119 (451)
T TIGR01173        87 FLPDDGDVLVLYGDVPLISAETLERLLEAHRQN  119 (451)
T ss_pred             hcCCCCcEEEEECCcCCcCHHHHHHHHHHHhhC
Confidence            764 47899999998 56888899998877554

This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.

>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch

Probab=90.92  E-value=2.9  Score=32.02  Aligned_cols=109  Identities=10%  Similarity=0.079  Sum_probs=64.4

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhc----CCCcEEEEEc----
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGL----NNGRVHLYRT----   84 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~----~~~~v~~i~~----   84 (214)
                      ..||.  .+|..+.. ..|..+|+.+.....    -+|+||-....  +...+.+.+. ..+    ....+.++..    
T Consensus        18 ~~pK~--llpv~g~~-pli~~~l~~l~~~gi----~~iivv~~~~~--~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   87 (200)
T cd02508          18 KRAKP--AVPFGGRY-RLIDFPLSNMVNSGI----RNVGVLTQYKS--RSLNDHLGSG-KEWDLDRKNGGLFILPPQQRK   87 (200)
T ss_pred             CCcce--eeEECCee-eeHHHHHHHHHHCCC----CEEEEEeCCCh--HHHHHHHhCC-CcccCCCCCCCEEEeCcccCC
Confidence            45554  77887864 467777777766433    37777776543  2333322210 001    0113445431    


Q ss_pred             --CCCcchHHHHHhhhhhcC---CCEEEEEcCCCccCcCchHHHHHHHhcCCC
Q psy1766          85 --SKREGLIRARMFGAKYAT---GKVLVFLDSHIEVNTHWLEPLLVPIAERTN  132 (214)
Q Consensus        85 --~~~~G~~~a~n~g~~~a~---gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~  132 (214)
                        +...|.+.|...|.....   .+.++++.+|.. .+.-+..+++...+...
T Consensus        88 ~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v-~~~~~~~~l~~~~~~~~  139 (200)
T cd02508          88 GGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHI-YNMDYREMLDFHIESGA  139 (200)
T ss_pred             CCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEE-EecCHHHHHHHHHHcCC
Confidence              345788888888887653   578889999984 45568888887654433

ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.

>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family

Probab=90.56  E-value=4.3  Score=31.36  Aligned_cols=98  Identities=11%  Similarity=0.091  Sum_probs=55.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhc--CCCcEEEEEcCCCcchHHHHHhh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGL--NNGRVHLYRTSKREGLIRARMFG   97 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~--~~~~v~~i~~~~~~G~~~a~n~g   97 (214)
                      .+|..+.  ..+..+|..+.+....    +|+||-+...      +.++++..+.  .+..+.++..+...|.+.+...+
T Consensus        23 ll~~~g~--pli~~~l~~l~~~~~~----~iivv~~~~~------~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l~~~   90 (220)
T cd06426          23 MLKVGGK--PILETIIDRFIAQGFR----NFYISVNYLA------EMIEDYFGDGSKFGVNISYVREDKPLGTAGALSLL   90 (220)
T ss_pred             cCeECCc--chHHHHHHHHHHCCCc----EEEEECccCH------HHHHHHHCCccccCccEEEEECCCCCcchHHHHHH
Confidence            4556565  5788888887765332    6666544322      2333333221  02345555544556767776544


Q ss_pred             hhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCC
Q psy1766          98 AKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERT  131 (214)
Q Consensus        98 ~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~  131 (214)
                      .. ...+.++++.+|... ...+..+++.+....
T Consensus        91 ~~-~~~~~~lv~~~D~i~-~~~~~~l~~~~~~~~  122 (220)
T cd06426          91 PE-KPTDPFLVMNGDILT-NLNYEHLLDFHKENN  122 (220)
T ss_pred             Hh-hCCCCEEEEcCCEee-ccCHHHHHHHHHhcC
Confidence            43 335678888899755 445778888775543

This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.

>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase

Probab=90.54  E-value=4.8  Score=31.68  Aligned_cols=102  Identities=17%  Similarity=0.268  Sum_probs=60.4

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhh---cCCCcEEEEEcCCCcc
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKG---LNNGRVHLYRTSKREG   89 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~---~~~~~v~~i~~~~~~G   89 (214)
                      ..||.  .+|.-+ . ..+..+|.++.+...    -+|+||-....     .+.+.++...   + +.++.+...+...|
T Consensus        20 ~~pK~--llpv~~-~-pli~~~l~~l~~~gi----~~i~vv~~~~~-----~~~~~~~l~~~~~~-~~~i~~~~~~~~~G   85 (240)
T cd02538          20 VVSKQ--LLPVYD-K-PMIYYPLSTLMLAGI----REILIISTPED-----LPLFKELLGDGSDL-GIRITYAVQPKPGG   85 (240)
T ss_pred             CCCce--eeEECC-E-EhHHHHHHHHHHCCC----CEEEEEeCcch-----HHHHHHHHhccccc-CceEEEeeCCCCCC
Confidence            44554  445544 3 678888888776433    27777654321     1223333221   1 22455555555678


Q ss_pred             hHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHh
Q psy1766          90 LIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIA  128 (214)
Q Consensus        90 ~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~  128 (214)
                      .+.|...+......+-++++.+|..+.+.-+..+++...
T Consensus        86 ~~~al~~a~~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~  124 (240)
T cd02538          86 LAQAFIIGEEFIGDDPVCLILGDNIFYGQGLSPILQRAA  124 (240)
T ss_pred             HHHHHHHHHHhcCCCCEEEEECCEEEccHHHHHHHHHHH
Confidence            888988888877656566668887765555777776654

This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.

>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=90.34  E-value=4  Score=36.09  Aligned_cols=98  Identities=16%  Similarity=0.166  Sum_probs=62.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK   99 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~   99 (214)
                      .+|.-+.  ..|...|+.+.+...    .+|+|+-....      +.++++...   .++.++..+...|.+.+.-.|++
T Consensus        29 llpi~gk--pli~~~l~~l~~~gi----~~ivvv~~~~~------~~i~~~~~~---~~i~~v~~~~~~Gt~~al~~~~~   93 (481)
T PRK14358         29 LHPVAGR--PMVAWAVKAARDLGA----RKIVVVTGHGA------EQVEAALQG---SGVAFARQEQQLGTGDAFLSGAS   93 (481)
T ss_pred             ecEECCe--eHHHHHHHHHHhCCC----CeEEEEeCCCH------HHHHHHhcc---CCcEEecCCCcCCcHHHHHHHHH
Confidence            3455444  577788888766532    37777654322      234443332   36777776667788888888877


Q ss_pred             hcC--CCEEEEEcCCC-ccCcCchHHHHHHHhcCCC
Q psy1766         100 YAT--GKVLVFLDSHI-EVNTHWLEPLLVPIAERTN  132 (214)
Q Consensus       100 ~a~--gd~i~~lD~D~-~~~~~~l~~l~~~~~~~~~  132 (214)
                      ...  .+-++++++|. .+.+..+..+++...+...
T Consensus        94 ~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~  129 (481)
T PRK14358         94 ALTEGDADILVLYGDTPLLRPDTLRALVADHRAQGS  129 (481)
T ss_pred             HhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCC
Confidence            653  22366789998 5678889999887755444

>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose

Probab=90.25  E-value=4.4  Score=32.30  Aligned_cols=104  Identities=9%  Similarity=0.038  Sum_probs=59.7

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEE---------E
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLY---------R   83 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i---------~   83 (214)
                      ..||.  .+|.-+.  ..|..++..+.+...    -+|+||-.-..  +...+.+.+....  ...+.+.         .
T Consensus        18 ~~pK~--llpv~~~--p~i~~~~~~~~~~gi----~~i~iv~~~~~--~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~   85 (253)
T cd02524          18 LKPKP--MVEIGGR--PILWHIMKIYSHYGH----NDFILCLGYKG--HVIKEYFLNYFLH--NSDVTIDLGTNRIELHN   85 (253)
T ss_pred             CCCce--EEEECCE--EHHHHHHHHHHhCCC----ceEEEECCCCH--HHHHHHHHhhhhh--cCceeEeecccceeeec
Confidence            44554  6666554  466667777665432    27777665433  3344444332211  1122221         1


Q ss_pred             ------------cCCCcchHHHHHhhhhhcCC-CEEEEEcCCCccCcCchHHHHHHHhc
Q psy1766          84 ------------TSKREGLIRARMFGAKYATG-KVLVFLDSHIEVNTHWLEPLLVPIAE  129 (214)
Q Consensus        84 ------------~~~~~G~~~a~n~g~~~a~g-d~i~~lD~D~~~~~~~l~~l~~~~~~  129 (214)
                                  .....|.+.+.-.+.+...+ +.++++++|.....+. ..+++....
T Consensus        86 ~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl-~~ll~~h~~  143 (253)
T cd02524          86 SDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNI-NALIEFHRS  143 (253)
T ss_pred             ccccccceeecccCcccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCH-HHHHHHHHH
Confidence                        11234567777778887765 8899999998887766 888876544

Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.

>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=90.19  E-value=4.5  Score=35.15  Aligned_cols=99  Identities=13%  Similarity=0.206  Sum_probs=64.2

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR   92 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~   92 (214)
                      ..||-  .+|.-+.  ..|..+|+++.+. . .   +|+|+-+..      .+.+.++..    ..+.++..+...|.+.
T Consensus        17 ~~pK~--l~~v~gk--pli~~~l~~l~~~-~-~---~i~vv~~~~------~~~i~~~~~----~~~~~~~~~~~~g~~~   77 (448)
T PRK14357         17 KIPKV--LHKISGK--PMINWVIDTAKKV-A-Q---KVGVVLGHE------AELVKKLLP----EWVKIFLQEEQLGTAH   77 (448)
T ss_pred             CCCce--eeEECCe--eHHHHHHHHHHhc-C-C---cEEEEeCCC------HHHHHHhcc----cccEEEecCCCCChHH
Confidence            44553  5566554  5788888887764 2 3   676664422      123444332    2455555556678888


Q ss_pred             HHHhhhhhcC-CCEEEEEcCCC-ccCcCchHHHHHHHhcC
Q psy1766          93 ARMFGAKYAT-GKVLVFLDSHI-EVNTHWLEPLLVPIAER  130 (214)
Q Consensus        93 a~n~g~~~a~-gd~i~~lD~D~-~~~~~~l~~l~~~~~~~  130 (214)
                      +...++.+.. .+.++++++|. .+....+..+++.+.+.
T Consensus        78 ai~~a~~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~  117 (448)
T PRK14357         78 AVMCARDFIEPGDDLLILYGDVPLISENTLKRLIEEHNRK  117 (448)
T ss_pred             HHHHHHHhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHhc
Confidence            8888887764 58999999998 46777788888877543

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=90.17  E-value=4.4  Score=34.49  Aligned_cols=50  Identities=16%  Similarity=0.266  Sum_probs=40.8

Q ss_pred             cchHHHHHhhhhhcCCCEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEe
Q psy1766          88 EGLIRARMFGAKYATGKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVP  137 (214)
Q Consensus        88 ~G~~~a~n~g~~~a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~  137 (214)
                      .|...+...|++....++++++++|.. ++++.++.+++.+......+++|
T Consensus        78 ~G~~~si~~gl~~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~  128 (366)
T PRK14489         78 QGPLSGILAGLEHADSEYLFVVACDTPFLPENLVKRLSKALAIEGADIAVP  128 (366)
T ss_pred             CChHHHHHHHHHhcCCCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEEE
Confidence            578888889999888899999999975 69999999999875555555555

>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=89.46  E-value=2.6  Score=36.78  Aligned_cols=94  Identities=11%  Similarity=0.017  Sum_probs=59.6

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK   99 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~   99 (214)
                      .+|..+ . ..|...++.+.... .   .+|+||-....      +.++++...   ..++++..+...|.+.+...+++
T Consensus        27 l~~i~g-k-pli~~~l~~l~~~~-~---~~iivv~~~~~------~~i~~~~~~---~~~~~v~~~~~~Gt~~al~~a~~   91 (456)
T PRK14356         27 LQTLLG-E-PMLRFVYRALRPLF-G---DNVWTVVGHRA------DMVRAAFPD---EDARFVLQEQQLGTGHALQCAWP   91 (456)
T ss_pred             ecccCC-C-cHHHHHHHHHHhcC-C---CcEEEEECCCH------HHHHHhccc---cCceEEEcCCCCCcHHHHHHHHH
Confidence            344444 3 57777777765432 2   26766644322      233333322   35677776666787777777766


Q ss_pred             hc---CCCEEEEEcCCC-ccCcCchHHHHHHHh
Q psy1766         100 YA---TGKVLVFLDSHI-EVNTHWLEPLLVPIA  128 (214)
Q Consensus       100 ~a---~gd~i~~lD~D~-~~~~~~l~~l~~~~~  128 (214)
                      ..   ..++++++++|. .++++.++.+++...
T Consensus        92 ~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~  124 (456)
T PRK14356         92 SLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA  124 (456)
T ss_pred             HHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh
Confidence            54   358999999998 568888999888765

>TIGR00454 conserved hypothetical protein TIGR00454

Probab=89.34  E-value=7.9  Score=29.42  Aligned_cols=94  Identities=9%  Similarity=0.077  Sum_probs=59.9

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK   99 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~   99 (214)
                      .++..+ . ..+...++.+.... ..   +|+||-+..+  +.+...++.    .   ...+.. ....|.......|++
T Consensus        21 Ll~i~G-k-plI~~vi~~l~~~~-i~---~I~Vv~~~~~--~~~~~~l~~----~---~~~~~~-~~g~G~~~~l~~al~   84 (183)
T TIGR00454        21 LIEVCG-R-CLIDHVLSPLLKSK-VN---NIIIATSPHT--PKTEEYINS----A---YKDYKN-ASGKGYIEDLNECIG   84 (183)
T ss_pred             EeEECC-E-EHHHHHHHHHHhCC-CC---EEEEEeCCCH--HHHHHHHhh----c---CcEEEe-cCCCCHHHHHHHHhh
Confidence            344444 4 67778888876543 22   7777665433  333333332    1   222333 567788888888988


Q ss_pred             hc-CCCEEEEEcCCCc-cCcCchHHHHHHHhc
Q psy1766         100 YA-TGKVLVFLDSHIE-VNTHWLEPLLVPIAE  129 (214)
Q Consensus       100 ~a-~gd~i~~lD~D~~-~~~~~l~~l~~~~~~  129 (214)
                      .. ..+.++++-+|.. +.+..+..+++.+..
T Consensus        85 ~~~~~~~~lv~~~D~P~i~~~~i~~li~~~~~  116 (183)
T TIGR00454        85 ELYFSEPFLVVSSDLINLRSKIIDSIVDYYYC  116 (183)
T ss_pred             cccCCCCEEEEeCCcCcCCHHHHHHHHHHHHh
Confidence            53 3577889999987 589999999998744

At this time this gene appears to be present only in Archea

>KOG2571|consensus

Probab=89.27  E-value=4.1  Score=38.37  Aligned_cols=35  Identities=11%  Similarity=0.130  Sum_probs=29.3

Q ss_pred             CEEEEEcCCCccCcCchHHHHHHHhcCCCE-EEEee
Q psy1766         104 KVLVFLDSHIEVNTHWLEPLLVPIAERTNT-VTVPI  138 (214)
Q Consensus       104 d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~-vv~~~  138 (214)
                      +||+++|+|..+.|+.+..|++.++.++.+ .+|+.
T Consensus       442 ~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG~  477 (862)
T KOG2571|consen  442 DYILVVDADTRLDPDALYHLVKVFDEDPQVGGACGR  477 (862)
T ss_pred             eEEEEecCCCccCcHHHHHHHHHhccCcccceeccc
Confidence            578999999999999999999999876654 45553

>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function

Probab=89.09  E-value=4.8  Score=28.53  Aligned_cols=82  Identities=11%  Similarity=0.102  Sum_probs=47.9

Q ss_pred             cEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhc--CCCEEEEEcCCCc-cCcCchHHHH
Q psy1766          48 HEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA--TGKVLVFLDSHIE-VNTHWLEPLL  124 (214)
Q Consensus        48 ~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a--~gd~i~~lD~D~~-~~~~~l~~l~  124 (214)
                      ++++|.-++..  +..  .......   ...+.++.+ ...+.+.-++.+++.+  ..+-++++-+|+. ++++.|.+..
T Consensus        11 ~~~~l~~~~~~--~~~--~~~~~~~---~~~~~~~~Q-~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l~~A~   82 (122)
T PF09837_consen   11 ADVVLAYTPDG--DHA--AFRQLWL---PSGFSFFPQ-QGGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDLEQAF   82 (122)
T ss_dssp             SEEEEEE------TTH--HHHHHHH----TTSEEEE---SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHHHHHH
T ss_pred             cCEEEEEcCCc--cHH--HHhcccc---CCCCEEeec-CCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHH
Confidence            57777777765  222  2221111   246667664 4556777788887776  5678999999998 6889999998


Q ss_pred             HHHhcCCCEEEEee
Q psy1766         125 VPIAERTNTVTVPI  138 (214)
Q Consensus       125 ~~~~~~~~~vv~~~  138 (214)
                      +.+++. ++|++|.
T Consensus        83 ~~L~~~-d~VlgPa   95 (122)
T PF09837_consen   83 EALQRH-DVVLGPA   95 (122)
T ss_dssp             HHTTT--SEEEEEB
T ss_pred             HHhccC-CEEEeec
Confidence            888655 7778874

; PDB: 3CGX_A.

>PLN02190 cellulose synthase-like protein

Probab=89.01  E-value=1.2  Score=41.05  Aligned_cols=55  Identities=16%  Similarity=0.120  Sum_probs=46.9

Q ss_pred             CCCceEEEEEEeC---CCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHH
Q psy1766          13 TLPSTSVIICFYN---EHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVET   69 (214)
Q Consensus        13 ~~p~vSVIIp~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~   69 (214)
                      ++|.|.|.|++++   |+...+..++.|+++-+||..+.-+.|.|||..  .-|.+.+.+
T Consensus        91 ~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s--~LT~~al~E  148 (756)
T PLN02190         91 DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCS--PLTYFSLKE  148 (756)
T ss_pred             cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCc--HhHHHHHHH
Confidence            5799999999999   666788899999999999998788899999988  666665543

>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2

Probab=88.85  E-value=6.1  Score=33.45  Aligned_cols=51  Identities=18%  Similarity=0.242  Sum_probs=36.9

Q ss_pred             CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHH
Q psy1766          15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVET   69 (214)
Q Consensus        15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~   69 (214)
                      +.+-|||-++|+. ++|+..|+||.+...-.. .-+|+.-|.-.  ++..++++.
T Consensus        31 ~~~vivvqVH~r~-~yl~~li~sL~~~~~I~~-~llifSHd~~~--~ein~~v~~   81 (356)
T PF05060_consen   31 DSIVIVVQVHNRP-EYLKLLIDSLSQARGIEE-ALLIFSHDFYS--EEINDLVQS   81 (356)
T ss_pred             CCEEEEEEECCcH-HHHHHHHHHHHHhhCccc-eEEEEeccCCh--HHHHHHHHh
Confidence            4688888899999 999999999987765542 45566666655  455555544

4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane

>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional

Probab=88.83  E-value=11  Score=31.76  Aligned_cols=107  Identities=14%  Similarity=0.140  Sum_probs=69.0

Q ss_pred             CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC--------
Q psy1766          15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK--------   86 (214)
Q Consensus        15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~--------   86 (214)
                      +.+.|+..+=+.-+..+..+|.|++..... ..+.+.|++|+-+  ++..+.++++..++ +..+.++..+.        
T Consensus        24 ~~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~-~~~~f~Il~~~is--~e~~~~l~~l~~~~-~~~i~~~~id~~~~~~~~~   99 (334)
T PRK15171         24 NSLDIAYGIDKNFLFGCGVSIASVLLNNPD-KSLVFHVFTDYIS--DADKQRFSALAKQY-NTRINIYLINCERLKSLPS   99 (334)
T ss_pred             CceeEEEECcHhhHHHHHHHHHHHHHhCCC-CCEEEEEEeCCCC--HHHHHHHHHHHHhc-CCeEEEEEeCHHHHhCCcc
Confidence            456666666434378999999999865433 2368888888877  67778888887776 45666654321        


Q ss_pred             --Ccch-HHHHHhhhhhc--CCCEEEEEcCCCccCcCchHHHHHH
Q psy1766          87 --REGL-IRARMFGAKYA--TGKVLVFLDSHIEVNTHWLEPLLVP  126 (214)
Q Consensus        87 --~~G~-~~a~n~g~~~a--~gd~i~~lD~D~~~~~~~l~~l~~~  126 (214)
                        +... ...|-...+.-  .-+-|+.||+|..+..+ |..+...
T Consensus       100 ~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~d-l~~L~~~  143 (334)
T PRK15171        100 TKNWTYATYFRFIIADYFIDKTDKVLYLDADIACKGS-IKELIDL  143 (334)
T ss_pred             cCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCC-HHHHHhc
Confidence              1111 22233333333  46889999999988765 5666544

>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit

Probab=88.60  E-value=1.3  Score=42.45  Aligned_cols=98  Identities=16%  Similarity=0.187  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHh--cCCCCCccEEEEEECCCCC----CCChHHHHHHHHhhc--------CCCcEEEEEcCCCcc-----
Q psy1766          29 ATLYRSVQTLLS--RTGQSLLHEIILVNDFSEY----PSNLHGEVETFVKGL--------NNGRVHLYRTSKREG-----   89 (214)
Q Consensus        29 ~~l~~~l~sl~~--q~~~~~~~eiivVdd~s~~----~d~t~~~~~~~~~~~--------~~~~v~~i~~~~~~G-----   89 (214)
                      +.++..|+.+.+  +..+.   |--+.+||+.-    ..+-..+++-+....        .-|.+.|+..+++.|     
T Consensus       457 Ee~k~RIe~l~a~~~~~p~---~~~~m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~  533 (1079)
T PLN02638        457 EEFKVRINGLVAKAQKVPE---EGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHK  533 (1079)
T ss_pred             HHHHHHHHHHHhhccccCC---ccccccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCccc
Confidence            566777777762  33433   44556777710    012233444333110        015667887777666     


Q ss_pred             hHHHHHhhhhh----cCCCEEEEEcCCCccC-cCchHHHHHHHhc
Q psy1766          90 LIRARMFGAKY----ATGKVLVFLDSHIEVN-THWLEPLLVPIAE  129 (214)
Q Consensus        90 ~~~a~n~g~~~----a~gd~i~~lD~D~~~~-~~~l~~l~~~~~~  129 (214)
                      +++|+|..++.    ++|+||+.+|.|..+. +..+.+.+-.+..
T Consensus       534 KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~lD  578 (1079)
T PLN02638        534 KAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMD  578 (1079)
T ss_pred             ccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhcC
Confidence            78999999954    4899999999999875 8999998888743

>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]

Probab=88.55  E-value=4.3  Score=31.24  Aligned_cols=58  Identities=9%  Similarity=0.115  Sum_probs=47.5

Q ss_pred             cEEEEEcCCCc-chHHHHHhhhhhcCCCEEEEEcCCCcc-CcCchHHHHHHHhcCCCEEE
Q psy1766          78 RVHLYRTSKRE-GLIRARMFGAKYATGKVLVFLDSHIEV-NTHWLEPLLVPIAERTNTVT  135 (214)
Q Consensus        78 ~v~~i~~~~~~-G~~~a~n~g~~~a~gd~i~~lD~D~~~-~~~~l~~l~~~~~~~~~~vv  135 (214)
                      .+.++.-.... |+-.+.-.|++++.+++++++-.|.-+ +++.++.+.....+....++
T Consensus        61 g~~vv~D~~~~~GPL~Gi~~al~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~~~~~  120 (192)
T COG0746          61 GLPVVPDELPGFGPLAGILAALRHFGTEWVLVLPCDMPFIPPELVERLLSAFKQTGAAIV  120 (192)
T ss_pred             CCceeecCCCCCCCHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHhhcccCCcEE
Confidence            46677655555 999999999999999999999999985 88999999998876554333

>KOG1022|consensus

Probab=88.49  E-value=2.5  Score=37.48  Aligned_cols=115  Identities=12%  Similarity=0.058  Sum_probs=75.5

Q ss_pred             CCCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcch
Q psy1766          11 PSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGL   90 (214)
Q Consensus        11 ~~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~   90 (214)
                      +..+...+.|+-+|++- +.|.+.+.....  .+.. .+|+||=|+-.. ..-.+.++...    ...+++..+.+|  .
T Consensus       439 k~~~qgFTlim~TYdR~-d~L~k~v~~ys~--vPsL-~kIlVVWNnq~k-~PP~es~~~~~----~VPlr~r~qkeN--s  507 (691)
T KOG1022|consen  439 KGHSQGFTLIMLTYDRV-DLLKKLVKHYSR--VPSL-KKILVVWNNQGK-NPPPESLEPDI----AVPLRFRQQKEN--S  507 (691)
T ss_pred             CCcccceeeeeehHHHH-HHHHHHHHHHhh--CCCc-ceEEEEecCCCC-CCChhhccccC----CccEEEEehhhh--h
Confidence            45666899999999988 888887776633  2333 688888664221 11122222221    135666555443  2


Q ss_pred             HHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766          91 IRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus        91 ~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~  136 (214)
                      -.+|-.-....+.+-|+-+|+|.+++.+-|.--.+..++.++..|+
T Consensus       508 LnNRF~~~peieT~AVL~IDDDIim~~ddldFgf~VWrefPD~lVG  553 (691)
T KOG1022|consen  508 LNNRFEPYPEIETEAVLEIDDDIIMPCDDLDFGFEVWREFPDRLVG  553 (691)
T ss_pred             hhcccccCcccccceeEEecCceeeecchhHHHHHHHHhCccceec
Confidence            2333334455688999999999999988899988989888877664

>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2

Probab=88.48  E-value=9.7  Score=29.32  Aligned_cols=91  Identities=12%  Similarity=0.101  Sum_probs=56.6

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcCCC---E
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGK---V  105 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd---~  105 (214)
                      ..+..+++.+++....+   +|+|.-|..    ...+.+++    + +..+...+ +.-.........++..+..+   +
T Consensus        25 pLi~~~i~~a~~s~~~d---~IvVaTd~~----~i~~~~~~----~-g~~v~~~~-~~~~~~~~r~~~~~~~~~~~~~~~   91 (217)
T PF02348_consen   25 PLIEYVIERAKQSKLID---EIVVATDDE----EIDDIAEE----Y-GAKVIFRR-GSLADDTDRFIEAIKHFLADDEDI   91 (217)
T ss_dssp             EHHHHHHHHHHHTTTTS---EEEEEESSH----HHHHHHHH----T-TSEEEE---TTSSSHHHHHHHHHHHHTCSTTSE
T ss_pred             cHHHHHHHHHHhCCCCC---eEEEeCCCH----HHHHHHHH----c-CCeeEEcC-hhhcCCcccHHHHHHHhhhhHHhh
Confidence            67888898888766655   777665543    24444444    3 23443333 22323333444556666555   9


Q ss_pred             EEEEcCCCcc-CcCchHHHHHHHhcCCC
Q psy1766         106 LVFLDSHIEV-NTHWLEPLLVPIAERTN  132 (214)
Q Consensus       106 i~~lD~D~~~-~~~~l~~l~~~~~~~~~  132 (214)
                      ++.+.+|+.+ .|..+.++++.+.+...
T Consensus        92 vv~~~~d~Pll~~~~i~~~i~~~~~~~~  119 (217)
T PF02348_consen   92 VVRLQGDSPLLDPTSIDRAIEDIREANE  119 (217)
T ss_dssp             EEEESTTETT--HHHHHHHHHHHHHSTT
T ss_pred             ccccCCeeeECCHHHHHHHHHHHhcCch
Confidence            9999999885 89999999999876544

7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....

>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit

Probab=88.48  E-value=8.1  Score=31.88  Aligned_cols=106  Identities=14%  Similarity=0.195  Sum_probs=63.9

Q ss_pred             CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHH-------------------HHh
Q psy1766          12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVET-------------------FVK   72 (214)
Q Consensus        12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~-------------------~~~   72 (214)
                      ...||.  .+|..+.  ..|...|+.+.+...    -+|+|+-....  +...+.+..                   +..
T Consensus        22 ~~~PKp--LvpV~gk--PiI~~vl~~l~~~Gi----~~ivivv~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (297)
T TIGR01105        22 KAIPKE--MLPIVDK--PMIQYIVDEIVAAGI----KEIVLVTHASK--NAVENHFDTSYELESLLEQRVKRQLLAEVQS   91 (297)
T ss_pred             CCCCce--eeEECCE--EHHHHHHHHHHHCCC----CEEEEEecCCh--HHHHHHHhchHHHHHHHHHhcchhhhhhhhh
Confidence            344554  6677665  477777777776543    27777766543  233332211                   000


Q ss_pred             h-cCCCcEEEEEcCCCcchHHHHHhhhhhcC-CCEEEEEcCCCccCc-------CchHHHHHHHh
Q psy1766          73 G-LNNGRVHLYRTSKREGLIRARMFGAKYAT-GKVLVFLDSHIEVNT-------HWLEPLLVPIA  128 (214)
Q Consensus        73 ~-~~~~~v~~i~~~~~~G~~~a~n~g~~~a~-gd~i~~lD~D~~~~~-------~~l~~l~~~~~  128 (214)
                      . ..+.+++++..++..|.+.|.-.+..... .++++++ +|..+++       -.+..+++...
T Consensus        92 ~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~~~~flvv~-gD~l~~~~~~~~~~~~l~~li~~~~  155 (297)
T TIGR01105        92 ICPPGVTIMNVRQAQPLGLGHSILCARPVVGDNPFVVVL-PDIIIDDATADPLRYNLAAMIARFN  155 (297)
T ss_pred             cCCCCceEEEeeCCCcCchHHHHHHHHHHhCCCCEEEEE-CCeeccccccccchhHHHHHHHHHH
Confidence            0 00235777777888999999999988775 3565555 8876653       25777877664

GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose

>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline

Probab=88.45  E-value=3.8  Score=31.99  Aligned_cols=95  Identities=16%  Similarity=0.314  Sum_probs=60.1

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC--Ccch
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK--REGL   90 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~--~~G~   90 (214)
                      ..||.  .+|.-+ . ..+...|.++.+...    -+|+||-....      +.+.++....  .++.++.++.  ..|.
T Consensus        18 ~~pK~--l~~~~g-~-~li~~~l~~l~~~gi----~~i~vv~~~~~------~~~~~~~~~~--~~~~~~~~~~~~~~g~   81 (229)
T cd02523          18 DRPKC--LLEING-K-PLLERQIETLKEAGI----DDIVIVTGYKK------EQIEELLKKY--PNIKFVYNPDYAETNN   81 (229)
T ss_pred             CCCce--eeeECC-E-EHHHHHHHHHHHCCC----ceEEEEeccCH------HHHHHHHhcc--CCeEEEeCcchhhhCc
Confidence            34554  445444 3 678888888776533    26776655322      2333333321  3677766543  4788


Q ss_pred             HHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHH
Q psy1766          91 IRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL  124 (214)
Q Consensus        91 ~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~  124 (214)
                      +.+...|+.+. .+.++++.+|..+.++.++.++
T Consensus        82 ~~s~~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~  114 (229)
T cd02523          82 IYSLYLARDFL-DEDFLLLEGDVVFDPSILERLL  114 (229)
T ss_pred             HHHHHHHHHHc-CCCEEEEeCCEecCHHHHHHHH
Confidence            88888888887 5778899999988776666554

This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP

>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=87.90  E-value=9.4  Score=33.25  Aligned_cols=95  Identities=13%  Similarity=0.103  Sum_probs=60.4

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK   99 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~   99 (214)
                      .+|.-+.  ..+..+|+++.+...    .+++|+-....      +.++++..    ..+.++......|.+.+...+++
T Consensus        24 ll~i~Gk--pli~~~l~~l~~~gi----~~iivvv~~~~------~~i~~~~~----~~~~~~~~~~~~g~~~al~~a~~   87 (458)
T PRK14354         24 LHKVCGK--PMVEHVVDSVKKAGI----DKIVTVVGHGA------EEVKEVLG----DRSEFALQEEQLGTGHAVMQAEE   87 (458)
T ss_pred             hCEeCCc--cHHHHHHHHHHhCCC----CeEEEEeCCCH------HHHHHHhc----CCcEEEEcCCCCCHHHHHHHHHH
Confidence            4455554  578888888876433    25555543221      12333322    23455555556787888888877


Q ss_pred             hcC--CCEEEEEcCCC-ccCcCchHHHHHHHhcC
Q psy1766         100 YAT--GKVLVFLDSHI-EVNTHWLEPLLVPIAER  130 (214)
Q Consensus       100 ~a~--gd~i~~lD~D~-~~~~~~l~~l~~~~~~~  130 (214)
                      ...  .+.++++++|. .+.+..+..+++...+.
T Consensus        88 ~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~  121 (458)
T PRK14354         88 FLADKEGTTLVICGDTPLITAETLKNLIDFHEEH  121 (458)
T ss_pred             HhcccCCeEEEEECCccccCHHHHHHHHHHHHhc
Confidence            653  47899999998 56888899999887543

>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose

Probab=87.90  E-value=7.4  Score=31.18  Aligned_cols=107  Identities=12%  Similarity=0.232  Sum_probs=63.9

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHH---H---Hhhc------------
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVET---F---VKGL------------   74 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~---~---~~~~------------   74 (214)
                      ..||-  .+|..+.  ..|...|+++.+...    -+|+|+-....  ....+.+..   +   ..+.            
T Consensus        20 ~~pK~--llpv~gk--pli~~~l~~l~~~gi----~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (267)
T cd02541          20 AIPKE--MLPIVDK--PVIQYIVEEAVAAGI----EDIIIVTGRGK--RAIEDHFDRSYELEETLEKKGKTDLLEEVRII   89 (267)
T ss_pred             CCCce--eeEECCE--EHHHHHHHHHHHCCC----CEEEEEeCCch--HHHHHHhCCcHHHHHHHHhcccHHHhhhhhcc
Confidence            44543  4566554  678888888876433    26666655433  222222211   0   0000            


Q ss_pred             -CCCcEEEEEcCCCcchHHHHHhhhhhcCCCEEEEEcCCCccCcC--chHHHHHHHhc
Q psy1766          75 -NNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTH--WLEPLLVPIAE  129 (214)
Q Consensus        75 -~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~--~l~~l~~~~~~  129 (214)
                       .+..+.++..+...|.+.+...++.....+-++++.+|..+...  .+..+++...+
T Consensus        90 ~~~~~i~~~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~  147 (267)
T cd02541          90 SDLANIHYVRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEK  147 (267)
T ss_pred             cCCceEEEEEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHH
Confidence             01245566656668999999988888765667777888876553  58888887643

Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.

>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2

Probab=87.48  E-value=12  Score=29.06  Aligned_cols=104  Identities=13%  Similarity=0.105  Sum_probs=60.8

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC-----CCcEEEEEcCCCcchHHHH
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN-----NGRVHLYRTSKREGLIRAR   94 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~-----~~~v~~i~~~~~~G~~~a~   94 (214)
                      .+|.-|.  ..+..+|+.+.+...    -+|+||-....     .+.++.+..++.     ...+.++......|.+.+.
T Consensus        25 Llpv~g~--pli~~~l~~l~~~g~----~~iivv~~~~~-----~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~~al   93 (214)
T cd04198          25 LLPVANK--PMIWYPLDWLEKAGF----EDVIVVVPEEE-----QAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSL   93 (214)
T ss_pred             cCEECCe--eHHHHHHHHHHHCCC----CeEEEEECHHH-----HHHHHHHHHhcccccCcceeEEEecCCCCcChHHHH
Confidence            5566565  577788888776422    37777765321     223333333210     1123334345678889998


Q ss_pred             HhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766          95 MFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus        95 n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~  136 (214)
                      ..+.....++ ++++.+|.. .+.-+..+++...+....+.+
T Consensus        94 ~~~~~~i~~d-~lv~~~D~i-~~~~l~~~l~~h~~~~~~~t~  133 (214)
T cd04198          94 RHIRKKIKKD-FLVLSCDLI-TDLPLIELVDLHRSHDASLTV  133 (214)
T ss_pred             HHHHhhcCCC-EEEEeCccc-cccCHHHHHHHHhccCCcEEE
Confidence            8888876555 677788854 445577777776554444333

N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.

>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase

Probab=87.25  E-value=13  Score=29.88  Aligned_cols=119  Identities=19%  Similarity=0.134  Sum_probs=66.7

Q ss_pred             CCCceEEEEEEeCCC----------------chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCC
Q psy1766          13 TLPSTSVIICFYNEH----------------PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNN   76 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~----------------~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~   76 (214)
                      .++.+++||++=...                ...|..+++.+......   .+|+||-+...     .+.++.....+ .
T Consensus        21 ~~~~i~aIILAAG~gsRmg~~~pKqll~l~Gkpll~~tl~~~~~~~~i---~~IvVV~~~~~-----~~~~~~~~~~~-~   91 (252)
T PLN02728         21 KEKSVSVILLAGGVGKRMGANMPKQYLPLLGQPIALYSLYTFARMPEV---KEIVVVCDPSY-----RDVFEEAVENI-D   91 (252)
T ss_pred             ccCceEEEEEcccccccCCCCCCcceeEECCeEHHHHHHHHHHhCCCC---CeEEEEeCHHH-----HHHHHHHHHhc-C
Confidence            445677777764332                14455677766543222   37777765332     22333333332 2


Q ss_pred             CcEEEEEcCCCcchHHHHHhhhhhc--CCCEEEEEcCCCc-cCcCchHHHHHHHhcCC-CEEEEeeeeee
Q psy1766          77 GRVHLYRTSKREGLIRARMFGAKYA--TGKVLVFLDSHIE-VNTHWLEPLLVPIAERT-NTVTVPIIDII  142 (214)
Q Consensus        77 ~~v~~i~~~~~~G~~~a~n~g~~~a--~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~-~~vv~~~~~~~  142 (214)
                      ..+.++.  ...+.....-.|++..  ..++|++.|++-. ++++.+..+++.+.++. .+.+.|..+.+
T Consensus        92 ~~i~~v~--gg~~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~~~~~~ga~i~~~~~~dti  159 (252)
T PLN02728         92 VPLKFAL--PGKERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKDAAVHGAAVLGVPVKATI  159 (252)
T ss_pred             CceEEcC--CCCchHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHHHHhhCCeEEEeecchhhE
Confidence            2344432  2334455566677765  3578888888655 58899999998886543 33444554443

>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase

Probab=87.14  E-value=13  Score=29.41  Aligned_cols=86  Identities=9%  Similarity=0.092  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc--CCCcchHHHHHhhhhh---cCC
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT--SKREGLIRARMFGAKY---ATG  103 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~--~~~~G~~~a~n~g~~~---a~g  103 (214)
                      .-|..+++.+.... .   .+|+|+-+.    +..    .+...++   +++++..  ....|..+. ..+++.   ...
T Consensus        25 Pli~~~le~~~~~~-~---d~VvVvt~~----~~i----~~~~~~~---g~~~v~~~~~~~~Gt~r~-~~~~~~l~~~~~   88 (238)
T TIGR00466        25 PMIVHVAENANESG-A---DRCIVATDD----ESV----AQTCQKF---GIEVCMTSKHHNSGTERL-AEVVEKLALKDD   88 (238)
T ss_pred             CHHHHHHHHHHhCC-C---CeEEEEeCH----HHH----HHHHHHc---CCEEEEeCCCCCChhHHH-HHHHHHhCCCCC
Confidence            57788888876432 2   377777442    222    3333333   4444432  222342222 222222   256


Q ss_pred             CEEEEEcCCCc-cCcCchHHHHHHHhcC
Q psy1766         104 KVLVFLDSHIE-VNTHWLEPLLVPIAER  130 (214)
Q Consensus       104 d~i~~lD~D~~-~~~~~l~~l~~~~~~~  130 (214)
                      ++++++++|.- ++++.+..+++.+.+.
T Consensus        89 d~Vli~~gD~Pli~~~~I~~li~~~~~~  116 (238)
T TIGR00466        89 ERIVNLQGDEPFIPKEIIRQVADNLATK  116 (238)
T ss_pred             CEEEEEcCCcCcCCHHHHHHHHHHHhcC
Confidence            89999999988 5899999999988543

>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional

Probab=87.13  E-value=9.2  Score=28.63  Aligned_cols=89  Identities=12%  Similarity=0.137  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc-CCCcchHHHHHhhhhhc---CCC
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT-SKREGLIRARMFGAKYA---TGK  104 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~-~~~~G~~~a~n~g~~~a---~gd  104 (214)
                      ..+..+++.+...  .   .+|+||-+...  .        + .   ...++++.. ....|...+.-.|++.+   +.+
T Consensus        16 ~ll~~~~~~l~~~--~---~~iivv~~~~~--~--------~-~---~~~~~~i~d~~~g~gpl~~~~~gl~~~~~~~~~   76 (178)
T PRK00576         16 TLVEHVVGIVGQR--C---APVFVMAAPGQ--P--------L-P---ELPAPVLRDELRGLGPLPATGRGLRAAAEAGAR   76 (178)
T ss_pred             CHHHHHHHHHhhc--C---CEEEEECCCCc--c--------c-c---cCCCCEeccCCCCCCcHHHHHHHHHHHHhcCCC
Confidence            5677777765432  1   37777754332  1        1 1   123445442 23456677666667654   579


Q ss_pred             EEEEEcCCCcc-CcCchHHHHHHHhcCCCEEEE
Q psy1766         105 VLVFLDSHIEV-NTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus       105 ~i~~lD~D~~~-~~~~l~~l~~~~~~~~~~vv~  136 (214)
                      +++++=+|.-+ +++.++.++.........++.
T Consensus        77 ~~lv~~~DmP~i~~~~i~~L~~~~~~~~~~~~~  109 (178)
T PRK00576         77 LAFVCAVDMPYLTVELIDDLARPAAQTDAEVVL  109 (178)
T ss_pred             EEEEEeCCCCCCCHHHHHHHHHHhhcCCCcEEE
Confidence            99999999885 889999998877555444443

>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase

Probab=86.68  E-value=14  Score=29.43  Aligned_cols=108  Identities=10%  Similarity=0.147  Sum_probs=61.6

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHH-------------------HHhh
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVET-------------------FVKG   73 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~-------------------~~~~   73 (214)
                      ..||.  .+|.-+.  ..|...|.++.+...    -+|+|+-....  ....+.+..                   ...-
T Consensus        20 ~~pK~--llpi~g~--pli~~~l~~l~~~gi----~~v~iv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (260)
T TIGR01099        20 AIPKE--MLPIVDK--PLIQYVVEEAVEAGI----EDILIVTGRGK--RAIEDHFDTSYELEHQLEKRGKEELLKEVRSI   89 (260)
T ss_pred             CCCce--eEEECCE--EHHHHHHHHHHhCCC----CEEEEEeCCcH--HHHHHHhcccHHHHHHHHhhhhHHHHHHhhhc
Confidence            44554  5666554  577778887765432    27777665433  222222210                   0000


Q ss_pred             cCCCcEEEEEcCCCcchHHHHHhhhhhcCCCEEEEEcCCCccCcC--chHHHHHHHhcC
Q psy1766          74 LNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTH--WLEPLLVPIAER  130 (214)
Q Consensus        74 ~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~--~l~~l~~~~~~~  130 (214)
                      .+...+.+.......|.+.+.-.+......+-++++.+|..+...  .+..+++...+.
T Consensus        90 ~~~~~i~~~~~~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~  148 (260)
T TIGR01099        90 SPLATIFYVRQKEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKY  148 (260)
T ss_pred             cccceEEEEecCCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHh
Confidence            001235555555677888888888877654556777777776543  688888877543

Built to distinquish between the highly similar genes galU and galF

>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional

Probab=86.07  E-value=6.4  Score=34.35  Aligned_cols=96  Identities=8%  Similarity=0.070  Sum_probs=60.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK   99 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~   99 (214)
                      .+|..+.  ..|...++.+.....    .+++++-....      +.+++....   .++.++..+...|.+.+...|+.
T Consensus        27 l~~i~gk--pli~~~i~~l~~~gi----~~i~vv~~~~~------~~i~~~~~~---~~~~~i~~~~~~Gt~~al~~a~~   91 (456)
T PRK09451         27 LHTLAGK--PMVQHVIDAANELGA----QHVHLVYGHGG------DLLKQTLAD---EPLNWVLQAEQLGTGHAMQQAAP   91 (456)
T ss_pred             cceeCCh--hHHHHHHHHHHhcCC----CcEEEEECCCH------HHHHHhhcc---CCcEEEECCCCCCcHHHHHHHHH
Confidence            3444443  567777777765432    26666654321      233343322   36677766666788888888887


Q ss_pred             hcC-CCEEEEEcCCC-ccCcCchHHHHHHHhcC
Q psy1766         100 YAT-GKVLVFLDSHI-EVNTHWLEPLLVPIAER  130 (214)
Q Consensus       100 ~a~-gd~i~~lD~D~-~~~~~~l~~l~~~~~~~  130 (214)
                      ... .+.++++++|. .+.+..+..+++...+.
T Consensus        92 ~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~  124 (456)
T PRK09451         92 FFADDEDILMLYGDVPLISVETLQRLRDAKPQG  124 (456)
T ss_pred             hhccCCcEEEEeCCcccCCHHHHHHHHHHhhcC
Confidence            653 57899999998 46778888888765433

>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase

Probab=85.79  E-value=16  Score=29.13  Aligned_cols=112  Identities=9%  Similarity=0.110  Sum_probs=60.3

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCC---------------
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNG---------------   77 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~---------------   77 (214)
                      ..||.  .+|.-+.  ..|..+|.++.+.. -   -+|+||-....  +...+.+.++.....+.               
T Consensus        19 ~~pK~--llpv~g~--pii~~~l~~l~~~g-i---~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (254)
T TIGR02623        19 LRPKP--MVEIGGK--PILWHIMKIYSHHG-I---NDFIICCGYKG--YVIKEYFANYFLHMSDVTFHMADNTMEVHHKR   88 (254)
T ss_pred             CCCcc--eeEECCE--EHHHHHHHHHHHCC-C---CEEEEEcCCCH--HHHHHHHHhhhhcccCeeEEeccccccccccc
Confidence            34554  5566554  47777777776542 2   37777755332  23333333321100001               


Q ss_pred             ----cEEEEEcCCCcchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHh-cCCCEEE
Q psy1766          78 ----RVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIA-ERTNTVT  135 (214)
Q Consensus        78 ----~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~vv  135 (214)
                          .+.+.......|.+.|...+.+....+.++++++|.....+ +..+++... .+.+..+
T Consensus        89 ~~~~~~~~~~~~~~~gt~~al~~~~~~i~~e~flv~~gD~i~~~d-l~~~~~~h~~~~~d~tl  150 (254)
T TIGR02623        89 VEPWRVTLVDTGESTQTGGRLKRVREYLDDEAFCFTYGDGVADID-IKALIAFHRKHGKKATV  150 (254)
T ss_pred             CCccceeeeecCCcCCcHHHHHHHHHhcCCCeEEEEeCCeEecCC-HHHHHHHHHHcCCCEEE
Confidence                12222222346777788777777666677799999876544 666666553 3444433

Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.

>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]

Probab=85.73  E-value=12  Score=32.42  Aligned_cols=103  Identities=15%  Similarity=0.134  Sum_probs=64.4

Q ss_pred             CCCCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcc
Q psy1766          10 FPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREG   89 (214)
Q Consensus        10 ~~~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G   89 (214)
                      +.+++|||  +=|.-..  +-|...|+++......    .+++|-..-.  +    .+++...+.  ..+.++.+.+..|
T Consensus        16 MkS~lPKV--LH~vaGk--pMl~hVi~~a~~l~~~----~i~vVvGh~a--e----~V~~~~~~~--~~v~~v~Q~eqlG   79 (460)
T COG1207          16 MKSDLPKV--LHPVAGK--PMLEHVIDAARALGPD----DIVVVVGHGA--E----QVREALAER--DDVEFVLQEEQLG   79 (460)
T ss_pred             ccCCCccc--chhccCc--cHHHHHHHHHhhcCcc----eEEEEEcCCH--H----HHHHHhccc--cCceEEEecccCC
Confidence            44566663  2233333  5666677776554443    4444433222  2    233322221  3588888889999


Q ss_pred             hHHHHHhhhhhc-C-CC-EEEEEcCCCcc-CcCchHHHHHHHh
Q psy1766          90 LIRARMFGAKYA-T-GK-VLVFLDSHIEV-NTHWLEPLLVPIA  128 (214)
Q Consensus        90 ~~~a~n~g~~~a-~-gd-~i~~lD~D~~~-~~~~l~~l~~~~~  128 (214)
                      -+.|.-.++.+- + .+ .++++.+|..+ .++.|+.|++...
T Consensus        80 TgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~  122 (460)
T COG1207          80 TGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHP  122 (460)
T ss_pred             hHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhh
Confidence            999999998876 2 23 57788888875 8899998887764

>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family

Probab=84.97  E-value=17  Score=29.15  Aligned_cols=103  Identities=13%  Similarity=0.069  Sum_probs=64.7

Q ss_pred             chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC-----C--cc----hHHHHHh
Q psy1766          28 PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK-----R--EG----LIRARMF   96 (214)
Q Consensus        28 ~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~-----~--~G----~~~a~n~   96 (214)
                      ...+..++.|++..+...  +.+.|++|+-+  ++..+.++++..++ +..+.++....     .  ..    .+.++ .
T Consensus        13 ~~~~~v~l~Sll~nn~~~--~~fyil~~~is--~e~~~~l~~~~~~~-~~~i~~i~i~~~~~~~~~~~~~~~~~~y~r-L   86 (248)
T cd06432          13 ERFLRIMMLSVMKNTKSP--VKFWFIKNFLS--PQFKEFLPEMAKEY-GFEYELVTYKWPRWLHKQTEKQRIIWGYKI-L   86 (248)
T ss_pred             HHHHHHHHHHHHHcCCCC--EEEEEEeCCCC--HHHHHHHHHHHHHh-CCceEEEEecChhhhhcccccchhHHHHHH-H
Confidence            477889999999876434  79999999887  77888888888776 44555554321     0  01    11222 1


Q ss_pred             hhh-hc--CCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEe
Q psy1766          97 GAK-YA--TGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP  137 (214)
Q Consensus        97 g~~-~a--~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~  137 (214)
                      .+. .-  .-+-+++||+|..+..+ |.++...=-.+...++++
T Consensus        87 ~~~~lLP~~vdkvLYLD~Dilv~~d-L~eL~~~dl~~~~~Aav~  129 (248)
T cd06432          87 FLDVLFPLNVDKVIFVDADQIVRTD-LKELMDMDLKGAPYGYTP  129 (248)
T ss_pred             HHHHhhhhccCEEEEEcCCceeccc-HHHHHhcCcCCCeEEEee
Confidence            122 22  35889999999988744 666665412233444443

C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.

>PLN02195 cellulose synthase A

Probab=83.84  E-value=1.6  Score=41.46  Aligned_cols=53  Identities=17%  Similarity=0.140  Sum_probs=39.6

Q ss_pred             CcEEEEEcCCCcc-----hHHHHHhhhhh----cCCCEEEEEcCCCccCc-CchHHHHHHHhc
Q psy1766          77 GRVHLYRTSKREG-----LIRARMFGAKY----ATGKVLVFLDSHIEVNT-HWLEPLLVPIAE  129 (214)
Q Consensus        77 ~~v~~i~~~~~~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~~~~-~~l~~l~~~~~~  129 (214)
                      |.+.|+..+++.|     +++|+|.+++.    ++++||+.+|+|..+.+ +++.+.+-.+..
T Consensus       419 P~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D  481 (977)
T PLN02195        419 PRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMD  481 (977)
T ss_pred             ceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccC
Confidence            3445555444444     78899999975    47999999999988755 799998887743

>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form

Probab=83.29  E-value=20  Score=30.01  Aligned_cols=104  Identities=13%  Similarity=0.132  Sum_probs=59.3

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECC-CCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchH
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDF-SEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLI   91 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~-s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~   91 (214)
                      ..||.  .+|.-+.  ..+..+|.++.+.. .   .+|+|+-.. ..  +...+.+... ..+ +..+.++..+...|.+
T Consensus        19 ~~pK~--l~pv~g~--pli~~~l~~l~~~g-i---~~i~vv~~~~~~--~~i~~~~~~~-~~~-~~~~~~~~~~~~~G~~   86 (353)
T TIGR01208        19 TRPKQ--LIPVANK--PILQYAIEDLAEAG-I---TDIGIVVGPVTG--EEIKEIVGEG-ERF-GAKITYIVQGEPLGLA   86 (353)
T ss_pred             CCCcc--ccEECCE--eHHHHHHHHHHHCC-C---CEEEEEeCCCCH--HHHHHHHhcc-ccc-CceEEEEECCCCCCHH
Confidence            34443  3455444  57777888876643 2   277666554 32  2222222210 111 2345666656677888


Q ss_pred             HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhc
Q psy1766          92 RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAE  129 (214)
Q Consensus        92 ~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~  129 (214)
                      .+.-.++.....+-++++.+|..++ .-+..+++...+
T Consensus        87 ~al~~a~~~l~~~~~li~~gD~~~~-~~l~~l~~~~~~  123 (353)
T TIGR01208        87 HAVYTARDFLGDDDFVVYLGDNLIQ-DGISRFVKSFEE  123 (353)
T ss_pred             HHHHHHHHhcCCCCEEEEECCeecC-ccHHHHHHHHHh
Confidence            8888888876544455667888775 456777776643

Alternate name: dTDP-D-glucose synthase

>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=82.77  E-value=11  Score=29.70  Aligned_cols=102  Identities=14%  Similarity=0.138  Sum_probs=51.7

Q ss_pred             eEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc-----CCCcchH
Q psy1766          17 TSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT-----SKREGLI   91 (214)
Q Consensus        17 vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~-----~~~~G~~   91 (214)
                      |..+|.+|+...+.+.+.+..+-  .+.+  .=+|-||-.++  +...+.++++...+  ++++++..     -...+..
T Consensus         1 iAylil~h~~~~~~~~~l~~~l~--~~~~--~f~iHiD~k~~--~~~~~~~~~~~~~~--~nv~~v~~r~~v~WG~~S~v   72 (244)
T PF02485_consen    1 IAYLILAHKNDPEQLERLLRLLY--HPDN--DFYIHIDKKSP--DYFYEEIKKLISCF--PNVHFVPKRVDVRWGGFSLV   72 (244)
T ss_dssp             EEEEEEESS--HHHHHHHHHHH----TTS--EEEEEE-TTS---HHHHHHHHHHHCT---TTEEE-SS-----TTSHHHH
T ss_pred             CEEEEEecCCCHHHHHHHHHHhc--CCCC--EEEEEEcCCCC--hHHHHHHHHhcccC--CceeecccccccccCCccHH
Confidence            45678887744366666666553  2223  24455777766  55666667665654  67777652     1223344


Q ss_pred             HHHHhhhhh-----cCCCEEEEEcCCCcc--CcCchHHHHHH
Q psy1766          92 RARMFGAKY-----ATGKVLVFLDSHIEV--NTHWLEPLLVP  126 (214)
Q Consensus        92 ~a~n~g~~~-----a~gd~i~~lD~D~~~--~~~~l~~l~~~  126 (214)
                      .|--.+++.     ..-+|+++|.+++.+  +...+.+.++.
T Consensus        73 ~A~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~  114 (244)
T PF02485_consen   73 EATLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLES  114 (244)
T ss_dssp             HHHHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHh
Confidence            444444433     366899999888875  33444444433

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.

>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]

Probab=82.70  E-value=7.6  Score=31.66  Aligned_cols=57  Identities=14%  Similarity=0.162  Sum_probs=44.0

Q ss_pred             CCcEEEEEcCCCcchHHHHHhhhhhcCCC-EEEEEcCCCccC-cCchHHHHHHHhcCCC
Q psy1766          76 NGRVHLYRTSKREGLIRARMFGAKYATGK-VLVFLDSHIEVN-THWLEPLLVPIAERTN  132 (214)
Q Consensus        76 ~~~v~~i~~~~~~G~~~a~n~g~~~a~gd-~i~~lD~D~~~~-~~~l~~l~~~~~~~~~  132 (214)
                      ..++.++++++..|.+.|.-.|-.....+ +.+.|-+|.... +..+.+|++..++...
T Consensus        96 ~~~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~  154 (291)
T COG1210          96 LVTISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETGG  154 (291)
T ss_pred             CceEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhCC
Confidence            46788999999999999999999988776 555555554443 6889999999866443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	214
2ffu_A	501	Crystal Structure Of Human Ppgalnact-2 Complexed Wi		5e-38
1xhb_A	472	The Crystal Structure Of Udp-Galnac: Polypeptide Al		9e-37
2d7i_A	570	Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac		4e-35

>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp And Ea2 Length = 501

Iteration: 1
 Score =  154 bits (388), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 86/209 (41%), Positives = 125/209 (59%), Gaps = 15/209 (7%)
Query: 5   CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSN-- 62
           C  + +   LP+TSV+I F+NE  + L R+V ++L ++   L+ EIILV+D+S  P +  
Sbjct: 56  CQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGA 115
Query: 63  LHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEP 122
           L G++E         +V + R  +REGL+R+R+ GA  A  KVL FLDSH E N HWLEP
Sbjct: 116 LLGKIE---------KVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEP 166
Query: 123 LLVPIAERTNTVTVPIIDIINADTFQYT-SSALVRGGFNWGLHFKWENL-PKVKTSSNPS 180
           LL  +AE    V  PIID+IN D FQY  +SA ++GGF+W L FKW+ + P+ + S   +
Sbjct: 167 LLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGN 226
Query: 181 YLPLQYTSSALVRGGFNWGLHFKWENLPK 209
             P+    + ++ GG      F +E L K
Sbjct: 227 --PVAPIKTPMIAGGLFVMDKFYFEELGK 253

>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N- Acetylgalactosaminyltransferase-T1 Length = 472

Iteration: 1
 Score =  149 bits (377), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 78/194 (40%), Positives = 118/194 (60%), Gaps = 3/194 (1%)
Query: 5   CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
           C  + +P  LP+TSV+I F+NE  +TL R+V ++++R+ + ++ EI+LV+D SE    L 
Sbjct: 19  CKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASER-DFLK 77
Query: 65  GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
             +E++VK L    VH+ R  +R GLIRAR+ GA  + G+V+ FLD+H E    WLEPLL
Sbjct: 78  RPLESYVKKLKVP-VHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLL 136
Query: 125 VPIAERTNTVTVPIIDIINADTFQYTS-SALVRGGFNWGLHFKWENLPKVKTSSNPSYLP 183
             I     TV  PIID+I+ DTF+Y + S +  GGFNW L+F+W  +P+ +         
Sbjct: 137 ARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRT 196
Query: 184 LQYTSSALVRGGFN 197
           L   +  +  G F+
Sbjct: 197 LPVRTPTMAGGLFS 210

>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And Mn2+ Length = 570

Iteration: 1
 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 122/203 (60%), Gaps = 8/203 (3%)
Query: 5   CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
           C ++ +  TLP+TS+II F+NE  ++L R+V ++L+R+   L+ EI+LV+DFS+   +L 
Sbjct: 102 CNSKRYLETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDR-EHLK 160
Query: 65  GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
             +E ++    +  V + RT KREGLIR RM GA  ATG V+ FLDSH E N +WL PLL
Sbjct: 161 KPLEDYMALFPS--VRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLL 218
Query: 125 VPIAERTNTVTVPIIDIINADTFQYTSSA--LVRGGFNWGLHFKWENLPKVKTSSNPSYL 182
             IA    T+  P+ID+I+ D F+Y + A   +RG F+W +++K   +P     ++PS  
Sbjct: 219 DRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSD- 277
Query: 183 PLQYTSSALVRGGFNWGLHFKWE 205
              + S  +  G F     + WE
Sbjct: 278 --PFESPVMAGGLFAVDRKWFWE 298

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	214
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	4e-60
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	2e-58
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	2e-56
3l7i_A	729	Teichoic acid biosynthesis protein F; GT-B fold, m	3e-10
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	2e-06
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	2e-05
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	3e-06
3bcv_A	240	Putative glycosyltransferase protein; protein stru	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2nxv_A	249	ATP synthase subunits region ORF 6; majastridin, A	6e-04

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 Length = 472

 Score =  194 bits (493), Expect = 4e-60
 Identities = 75/169 (44%), Positives = 110/169 (65%), Gaps = 3/169 (1%)

Query: 5   CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
           C  + +P  LP+TSV+I F+NE  +TL R+V ++++R+ + ++ EI+LV+D SE    L 
Sbjct: 19  CKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERD-FLK 77

Query: 65  GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
             +E++VK L    VH+ R  +R GLIRAR+ GA  + G+V+ FLD+H E    WLEPLL
Sbjct: 78  RPLESYVKKLK-VPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLL 136

Query: 125 VPIAERTNTVTVPIIDIINADTFQYT-SSALVRGGFNWGLHFKWENLPK 172
             I     TV  PIID+I+ DTF+Y   S +  GGFNW L+F+W  +P+
Sbjct: 137 ARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQ 185

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* Length = 570

 Score =  191 bits (487), Expect = 2e-58
 Identities = 81/223 (36%), Positives = 122/223 (54%), Gaps = 16/223 (7%)

Query: 5   CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
           C ++ +  TLP+TS+II F+NE  ++L R+V ++L+R+   L+ EI+LV+DFS+    L 
Sbjct: 102 CNSKRYLETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREH-LK 160

Query: 65  GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
             +E ++    +  V + RT KREGLIR RM GA  ATG V+ FLDSH E N +WL PLL
Sbjct: 161 KPLEDYMALFPS--VRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLL 218

Query: 125 VPIAERTNTVTVPIIDIINADTFQY--TSSALVRGGFNWGLHFKWENLPKVKTSSNPSY- 181
             IA    T+  P+ID+I+ D F+Y   +   +RG F+W +++K   +P     ++PS  
Sbjct: 219 DRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDP 278

Query: 182 LPLQYTSSALV---------RGGFNWGLHFK-WENLPKGTHTW 214
                 +  L           GG++ GL     E        W
Sbjct: 279 FESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVW 321

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* Length = 501

 Score =  185 bits (470), Expect = 2e-56
 Identities = 75/168 (44%), Positives = 104/168 (61%), Gaps = 8/168 (4%)

Query: 5   CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
           C  + +   LP+TSV+I F+NE  + L R+V ++L ++   L+ EIILV+D+S  P +  
Sbjct: 56  CQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPED-G 114

Query: 65  GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
             +    K      V + R  +REGL+R+R+ GA  A  KVL FLDSH E N HWLEPLL
Sbjct: 115 ALLGKIEK------VRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLL 168

Query: 125 VPIAERTNTVTVPIIDIINADTFQYT-SSALVRGGFNWGLHFKWENLP 171
             +AE    V  PIID+IN D FQY  +SA ++GGF+W L FKW+ + 
Sbjct: 169 ERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMT 216

>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A* Length = 729

 Score = 58.5 bits (141), Expect = 3e-10
 Identities = 20/129 (15%), Positives = 48/129 (37%), Gaps = 7/129 (5%)

Query: 15  PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGL 74
              ++I+ +YN     +   ++++  +  Q     +I+VND S         ++  +K  
Sbjct: 2   NKLTIIVTYYN-AEEYITGCLESIKQQRTQDF--NLIIVNDGS--TDQSKKLMDEAIKDY 56

Query: 75  NNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTV 134
           +   +      +  G   AR    +       +FLD+  E+ ++ +    +     T+ +
Sbjct: 57  DK-NIRFIDLDENSGHAHARNIALEEVETPYFMFLDADDELASYAIT-FYLEKFNNTDGL 114

Query: 135 TVPIIDIIN 143
             PI     
Sbjct: 115 IAPIHSFTT 123

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Length = 625

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 29/188 (15%), Positives = 66/188 (35%), Gaps = 14/188 (7%)

Query: 11  PSTLPSTSVIICFYNEHPATLYRSVQTLLS-RTGQSLLHEIILVNDFSEYPSNLHGEVET 69
              +   S++I  YN     L  ++  L + +T      E+I+ +D S+        +E 
Sbjct: 89  QLIIDGLSIVIPTYN-RAKILAITLACLCNQKTIYDY--EVIVADDGSK------ENIEE 139

Query: 70  FVKGL-NNGRVH-LYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPI 127
            V+   +   +  + +      L   R  G + A    +  LD  +  N  W++  +  +
Sbjct: 140 IVREFESLLNIKYVRQKDYGYQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELL 199

Query: 128 AERTNTVTVPIIDIINADTFQYTSSALVRGGFNWG--LHFKWENLPKVKTSSNPSYLPLQ 185
           A   N   +     I+     Y      +   N    +    +   KV+ + +  +    
Sbjct: 200 AVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVAGKVEQNKSVDWRIEH 259

Query: 186 YTSSALVR 193
           + ++  +R
Sbjct: 260 FKNTDNLR 267

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Length = 625

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 10/112 (8%)

Query: 1   MSIICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLH-EIILVNDFSEY 59
                        +P  S+ I  YN     + R V++ L+   Q++   E+ + +D S  
Sbjct: 361 RKKEKIESATLKRVPLVSIYIPAYN-CSKYIVRCVESALN---QTITDLEVCICDDGSTD 416

Query: 60  PSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDS 111
            +     ++      N+ RV      K +G+  A     +   G  +  LDS
Sbjct: 417 DT--LRILQEHYA--NHPRVRFISQ-KNKGIGSASNTAVRLCRGFYIGQLDS 463

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* Length = 255

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 12/100 (12%)

Query: 18  SVIICFYNEHPATLYRSVQTLLSRTGQSLLH-EIILVNDFSEYPSNLHGEVETF-----V 71
           SVI+  YN     + +S+ ++LS   Q+    E+ +++D S         +  F     V
Sbjct: 4   SVIMTSYN-KSDYVAKSISSILS---QTFSDFELFIMDDNSN--EETLNVIRPFLNDNRV 57

Query: 72  KGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDS 111
           +   +    +   +++           + A G+ + +   
Sbjct: 58  RFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATD 97

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} Length = 240

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 42/196 (21%)

Query: 18  SVIICFYN-EHPATLYRSVQTLLSRTGQSLLH-EIILVNDFS---------EYPSNLHGE 66
           SVI+  YN E    L + VQ LL+   Q+L   EIIL++D S         +Y +     
Sbjct: 8   SVIVPIYNVE--KYLDQCVQALLA---QTLSDIEIILIDDESPDNCPKICDDYAAQ---- 58

Query: 67  VETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDS--HIEVNTHWLEPLL 124
                       + +    K  GL  A   G   ATG+ + F DS  +++ +       +
Sbjct: 59  ---------YPNIKVIHK-KNAGLGMACNSGLDVATGEYVAFCDSDDYVDSDM--YM-TM 105

Query: 125 VPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFK-WENLPKVKTSSNPSYLP 183
             +A++         D +     + T + +  G       FK ++N  ++ T        
Sbjct: 106 YNVAQKYTC------DAVFTGLKRITMAGIPTGTVTHQKEFKLYKNKNEIHTLLKDLIAS 159

Query: 184 LQYTSSALVRGGFNWG 199
             Y             
Sbjct: 160 DPYAREERAIQVSAKV 175

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 31/127 (24%)

Query: 19  VIICFYNEHPATLYRSVQTLLSRTGQSLLHEI--------ILVNDFSEYPSNLHGEVETF 70
           +     ++    + + V+ +L    + L+  I        ++   + E    L+ + + F
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 71  VKGLNNGRVHLYRTSKREGLIRAR---------MFGAKYATGK-VL---VFLDSHIEV-- 115
            K  N  R+  Y    R+ L+  R         + G+    GK  +   V L   ++   
Sbjct: 127 AK-YNVSRLQPY-LKLRQALLELRPAKNVLIDGVLGS----GKTWVALDVCLSYKVQCKM 180

Query: 116 --NTHWL 120
                WL
Sbjct: 181 DFKIFWL 187

>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A* Length = 249

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 10/111 (9%), Positives = 24/111 (21%), Gaps = 28/111 (25%)

Query: 19  VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGR 78
            +     +  A   R +++           E +  +       N  G             
Sbjct: 19  SVCSLVRD-QAKYDRLLESFERFGFTPDKAEFLAAD-------NREGNQFHGFSWHKQM- 69

Query: 79  VHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAE 129
                                   G+ ++F    +E+     + L+  I  
Sbjct: 70  -------------------LPRCKGRYVIFCHEDVELVDRGYDDLVAAIEA 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	214
1xhb_A	472	Polypeptide N-acetylgalactosaminyltransferase 1; g	100.0
2d7i_A	570	Polypeptide N-acetylgalactosaminyltransferase 10;	99.98
2ffu_A	501	Ppgalnact-2, polypeptide N-acetylgalactosaminyltra	99.97
3bcv_A	240	Putative glycosyltransferase protein; protein stru	99.94
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	99.94
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	99.91
3l7i_A	729	Teichoic acid biosynthesis protein F; GT-B fold, m	99.9
3ckj_A	329	Putative uncharacterized protein; mycobacteria, un	99.88
2z86_A	625	Chondroitin synthase; GT-A, glycosyltransferase A,	99.87
4fix_A	657	UDP-galactofuranosyl transferase GLFT2; CAZY GT-2	99.87
3f1y_A	387	Mannosyl-3-phosphoglycerate synthase; GT-A type gl	99.86
4hg6_A	802	Cellulose synthase subunit A; membrane translocati	99.82
2nxv_A	249	ATP synthase subunits region ORF 6; majastridin, A	99.73
2wvl_A	391	Mannosyl-3-phosphoglycerate synthase; GT-A fold, t	99.69
2bo4_A	397	Mannosylglycerate synthase; catalysis, glycosyltra	99.66
2fy7_A	287	Beta-1,4-galactosyltransferase 1; M339H mutant, AP	99.55
2zu9_A	394	Mannosyl-3-phosphoglycerate synthase; GT-A fold, g	99.51
1fo8_A	343	Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetyl	99.39
2d0j_A	246	Galactosylgalactosylxylosylprotein 3-beta- glucuro	97.35
1v84_A	253	Galactosylgalactosylxylosylprotein 3-beta- glucuro	97.19
3cu0_A	281	Galactosylgalactosylxylosylprotein 3-beta- glucuro	97.14
3lw6_A	287	FI08434P, beta-4-galactosyltransferase 7; protein-	97.0
1omz_A	293	Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; ro	96.9
3oam_A	252	3-deoxy-manno-octulosonate cytidylyltransferase; c	96.32
3k8d_A	264	3-deoxy-manno-octulosonate cytidylyltransferase; K	96.22
1qwj_A	229	Cytidine monophospho-N-acetylneuraminic acid synth	95.93
2c0n_A	203	A197; thermophil protein, thermophilic virus, STIV	95.91
3tqd_A	256	3-deoxy-manno-octulosonate cytidylyltransferase; c	95.87
3tzt_A	276	Glycosyl transferase family 8; structural genomics	95.64
1ezi_A	228	CMP-N-acetylneuraminic acid synthetase; homodimer,	95.57
1h7e_A	245	3-deoxy-manno-octulosonate cytidylyltransferase; n	95.33
2wee_A	197	MOBA-related protein; unknown function; 1.65A {Myc	95.05
3st8_A	501	Bifunctional protein GLMU; acetyltransferase, pyro	94.96
2y6p_A	234	3-deoxy-manno-octulosonate cytidylyltransferase; l	94.91
1i52_A	236	4-diphosphocytidyl-2-C-methylerythritol synthase;	94.8
2waw_A	199	MOBA relate protein; unknown function; HET: PGE; 1	94.55
2yc3_A	228	2-C-methyl-D-erythritol 4-phosphate cytidylyltran	94.49
4ecm_A	269	Glucose-1-phosphate thymidylyltransferase; HET: DA	94.39
1vgw_A	231	4-diphosphocytidyl-2C-methyl-D-erythritol synthas;	94.19
4fcu_A	253	3-deoxy-manno-octulosonate cytidylyltransferase; s	94.16
4fce_A	459	Bifunctional protein GLMU; GLMU. csgid, niaid, str	93.74
3ngw_A	208	Molybdopterin-guanine dinucleotide biosynthesis P	93.69
3juk_A	281	UDP-glucose pyrophosphorylase (GALU); transfer; HE	93.22
3q80_A	231	2-C-methyl-D-erythritol 4-phosphate cytidyltransf;	93.21
1w55_A	371	ISPD/ISPF bifunctional enzyme; biosynthetic pathwa	93.16
3f1c_A	246	Putative 2-C-methyl-D-erythritol 4-phosphate cytid	93.09
1fxo_A	293	Glucose-1-phosphate thymidylyltransferase; rhamnos	92.87
1vic_A	262	3-deoxy-manno-octulosonate cytidylyltransferase; s	92.85
2qh5_A	308	PMI, ALGA, mannose-6-phosphate isomerase; structur	92.79
1e5k_A	201	Molybdopterin-guanine dinucleotide biosynthesis pr	92.77
3d5n_A	197	Q97W15_sulso; NESG, SSR125, structural genomics, P	92.64
3rsb_A	196	Adenosylcobinamide-phosphate guanylyltransferase;	92.54
2ux8_A	297	Glucose-1-phosphate uridylyltransferase; UGPG, GAL	92.09
2vsh_A	236	TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly	92.06
1lvw_A	295	Glucose-1-phosphate thymidylyltransferase; protein	91.8
1g9r_A	311	Glycosyl transferase; alpha-beta structure; HET: U	91.72
2xwl_A	223	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	91.58
2e8b_A	201	Probable molybdopterin-guanine dinucleotide biosy	91.43
1hm9_A	468	GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr	91.22
3pnn_A	303	Conserved domain protein; structural genomics, PSI	91.15
2v0h_A	456	Bifunctional protein GLMU; cell WALL, magnesium, c	90.92
2pa4_A	323	UTP-glucose-1-phosphate uridylyltransferase; phosp	90.26
2e3d_A	302	UTP--glucose-1-phosphate uridylyltransferase; UDP-	90.21
1mc3_A	296	Glucose-1-phosphate thymidylyltransferase; glucose	90.13
2xme_A	232	CTP-inositol-1-phosphate cytidylyltransferase; CDP	88.25
2i5e_A	211	Hypothetical protein MM_2497; APC86122, methanosar	84.87
1ll2_A	333	Glycogenin-1; protein-substrate complex, beta-alph	84.77
1vpa_A	234	2-C-methyl-D-erythritol 4-phosphate cytidylyltran;	83.46
3cgx_A	242	Putative nucleotide-diphospho-sugar transferase; Y	83.43

>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17

Probab=100.00  E-value=3.6e-32  Score=235.19  Aligned_cols=197  Identities=40%  Similarity=0.714  Sum_probs=166.6

Q ss_pred             CccccCCcCCCCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCC-ChHHHHHHHHhhcCCC-cE
Q psy1766           2 SIICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPS-NLHGEVETFVKGLNNG-RV   79 (214)
Q Consensus         2 ~~~~~~~~~~~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d-~t~~~~~~~~~~~~~~-~v   79 (214)
                      ...|++..|+..+|+||||||+||++++.|.+||+|+++|+++...+|||||||||+  | .+.++++++.+++  + ++
T Consensus        16 ~~~c~~~~~~~~~p~vSVIIp~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~--d~~t~~~l~~~~~~~--~~~v   91 (472)
T 1xhb_A           16 LEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASE--RDFLKRPLESYVKKL--KVPV   91 (472)
T ss_dssp             CGGGGTCCCCSCCCCEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCC--CGGGTHHHHHHHHSS--SSCE
T ss_pred             ChhhccCcCCcCCCCeEEEEEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCC--cHHHHHHHHHHHHHC--CCcE
Confidence            467999999999999999999999977899999999999999875579999999999  6 5999999998876  5 89


Q ss_pred             EEEEcCCCcchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeeecCCcceeec-CCceeee
Q psy1766          80 HLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTS-SALVRGG  158 (214)
Q Consensus        80 ~~i~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~~-~~~~~g~  158 (214)
                      ++++.++|.|.+.|+|.|++.|+|+||+|+|+|+.+.|+||+.+++.+.+++..+++|.++.++.+++.+.. .....|+
T Consensus        92 ~vi~~~~n~G~~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  171 (472)
T 1xhb_A           92 HVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGG  171 (472)
T ss_dssp             EEEECSSCCCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEE
T ss_pred             EEEECCCCCChHHHHHHHHHhccCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEEEeeeeeEcCCCceeccCCCcccce
Confidence            999999999999999999999999999999999999999999999999999999999999999988887753 4566889


Q ss_pred             eEecccceeecCCccccCCC------CCCCCCCCCccc-------hhcccccccccc
Q psy1766         159 FNWGLHFKWENLPKVKTSSN------PSYLPLQYTSSA-------LVRGGFNWGLHF  202 (214)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-------~~~ggf~~~~~~  202 (214)
                      ++|.+.+.|..++.......      ....|...++++       ..+||||..+..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfde~~~~  228 (472)
T 1xhb_A          172 FNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDI  228 (472)
T ss_dssp             ECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHHTTSCCTTSCT
T ss_pred             eeccceeecccCCHHHHhcccCCCCCcccCccccceeEEEEHHHHHHcCCCCCcccc
Confidence            99999999987765322111      111133444443       389999998865

>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*

Probab=99.98  E-value=2.4e-31  Score=234.96  Aligned_cols=197  Identities=39%  Similarity=0.684  Sum_probs=164.5

Q ss_pred             CccccCCcCCCCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCCh-HHHHHHHHhhcCCCcEE
Q psy1766           2 SIICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL-HGEVETFVKGLNNGRVH   80 (214)
Q Consensus         2 ~~~~~~~~~~~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t-~~~~~~~~~~~~~~~v~   80 (214)
                      ...|+...|++.+|+||||||+||++++.|.+||.|+++|++++..+|||||||||+  |.+ .++++++..++  ++|+
T Consensus        99 ~~~~~~~~~~~~~P~vSVIIp~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~--D~tl~~~l~~~~~~~--~~v~  174 (570)
T 2d7i_A           99 HPNCNSKRYLETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSD--REHLKKPLEDYMALF--PSVR  174 (570)
T ss_dssp             CGGGGTCCEESSCCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCC--CGGGTHHHHHHHTTS--TTEE
T ss_pred             CccceecccCCCCCCeEEEEEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCC--cHHHHHHHHHHHHhC--CeEE
Confidence            346888888889999999999999976899999999999998874469999999999  788 89999998875  7999


Q ss_pred             EEEcCCCcchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeeecCCcceeec--CCceeee
Q psy1766          81 LYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTS--SALVRGG  158 (214)
Q Consensus        81 ~i~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~~--~~~~~g~  158 (214)
                      +++.++|.|.+.|+|.|++.|+|+||+|+|+|+.+.|+||+.+++.+.+++..+++|.++.++.+++.+..  .....++
T Consensus       175 vi~~~~n~G~~~A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll~~l~~~~~~vv~~~i~~~~~~~~~~~~~~~~~~~~~  254 (570)
T 2d7i_A          175 ILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGA  254 (570)
T ss_dssp             EEECSSCCCHHHHHHHHHHHCCSSEEEECCSSEEECTTCSHHHHHHHHHCTTEEEEEEEEEECTTTCCEECCTTSSCEEE
T ss_pred             EEECCCCCCHHHHHHHHHHhcCCCEEEEEcCCccccccHHHHHHHHHHhCCCEEEeeeeeccCCCchhhccccCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999998888765  3446788


Q ss_pred             eEecccceeecCCcc-ccCCCCC-C-CCCCCCccch-------hcccccccccc
Q psy1766         159 FNWGLHFKWENLPKV-KTSSNPS-Y-LPLQYTSSAL-------VRGGFNWGLHF  202 (214)
Q Consensus       159 ~~~~~~~~~~~~~~~-~~~~~~~-~-~~~~~~~~~~-------~~ggf~~~~~~  202 (214)
                      +.|.+.+.+...... ....... + .+...+++++       .+||||..+..
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfDe~~~~  308 (570)
T 2d7i_A          255 FDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWELGGYDPGLEI  308 (570)
T ss_dssp             ECTTCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHHHTTSSCTTCCS
T ss_pred             ccccccccccccchhhhccCCCcceecccccceEEEEEHHHHHhcCCCCCcccc
Confidence            999988888766543 1111111 1 1334444433       89999998764

>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*

Probab=99.97  E-value=1.8e-30  Score=226.18  Aligned_cols=194  Identities=40%  Similarity=0.678  Sum_probs=158.2

Q ss_pred             CccccCCcCCCCCCceEEEEEEeCCCch-HHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEE
Q psy1766           2 SIICANQTFPSTLPSTSVIICFYNEHPA-TLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVH   80 (214)
Q Consensus         2 ~~~~~~~~~~~~~p~vSVIIp~~n~~~~-~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~   80 (214)
                      ...|+...|+..+|+||||||+||++ . .|.+||+|+++|+++...+|||||||||+  |.+.+.+   .++.  ++++
T Consensus        53 ~~~~~~~~~~~~~p~vSVIIp~yN~~-~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~--D~t~~~~---~~~~--~~v~  124 (501)
T 2ffu_A           53 HDQCQRKQWRVDLPATSVVITFHNEA-RSALLRTVVSVLKKSPPHLIKEIILVDDYSN--DPEDGAL---LGKI--EKVR  124 (501)
T ss_dssp             CGGGGGCCCCSSCCCEEEEEEESSCC-HHHHHHHHHHHHHHSCGGGEEEEEEEECSCS--CTHHHHG---GGGB--TTEE
T ss_pred             hhHhccccCCcCCCCEEEEEEeCcCc-HHHHHHHHHHHHhhCchhhceeEEEEECCCC--chHHHHH---HhcC--CCEE
Confidence            45688888999999999999999999 7 99999999999998764469999999999  7774332   3343  7899


Q ss_pred             EEEcCCCcchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeeecCCcceeec-CCceeeee
Q psy1766          81 LYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTS-SALVRGGF  159 (214)
Q Consensus        81 ~i~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~~-~~~~~g~~  159 (214)
                      +++.++|.|.+.|+|.|++.|+|+||+|+|+|+.++|+||+.+++.+.+++..+++|.++.++.+++.+.+ .....|++
T Consensus       125 vi~~~~n~G~~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~  204 (501)
T 2ffu_A          125 VLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGF  204 (501)
T ss_dssp             EEECSSCCHHHHHHHHHHHHCCSSEEEECCSSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECTTTCCEECBCSSEEEEE
T ss_pred             EEECCCCcCHHHHHHHHHHhcCCCEEEEECCCcccCccHHHHHHHHHHhCCCeEEEeeeccCcCCCceeecCCcccceEe
Confidence            99999999999999999999999999999999999999999999999988888999999999998888764 34567889


Q ss_pred             EecccceeecCCccccCCCC-----C-CCCCCCCcc-------chhccccccccccc
Q psy1766         160 NWGLHFKWENLPKVKTSSNP-----S-YLPLQYTSS-------ALVRGGFNWGLHFK  203 (214)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~-------~~~~ggf~~~~~~~  203 (214)
                      .|.+.+.|..++........     . ..|...+++       +..+||||..+.+.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfde~~~~~  261 (501)
T 2ffu_A          205 DWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVW  261 (501)
T ss_dssp             CTTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHHHHHTTCCCTTCCSS
T ss_pred             eecCCCccccCCHHHHhhccCCCCCcccCccccceEEEEEHHHHHHhCCCCcccccc
Confidence            99999999877654221110     0 113333333       33899999988653

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}

Probab=99.94  E-value=1.1e-26  Score=183.04  Aligned_cols=117  Identities=27%  Similarity=0.313  Sum_probs=106.8

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR   92 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~   92 (214)
                      .+|+||||||+||++ +.|.+||+|+++|++++  +|||||||||+  |+|.++++++..++  +++++++ .+|.|.+.
T Consensus         3 ~~p~vsViIp~yn~~-~~l~~~l~Sl~~q~~~~--~eiIvvDd~S~--d~t~~~~~~~~~~~--~~i~~i~-~~n~G~~~   74 (240)
T 3bcv_A            3 LIPKVSVIVPIYNVE-KYLDQCVQALLAQTLSD--IEIILIDDESP--DNCPKICDDYAAQY--PNIKVIH-KKNAGLGM   74 (240)
T ss_dssp             CCCSEEEEEEESSCT-TTHHHHHHHHHTCSSSS--EEEEEEECCCS--SSHHHHHHHHHHHC--SSEEEEE-CCCCCHHH
T ss_pred             CCCcEEEEEecCCCH-HHHHHHHHHHHhCcCCC--eEEEEEECCCC--cCHHHHHHHHHhhC--CCEEEEE-CCCCChHH
Confidence            468999999999999 99999999999999987  79999999999  89999999998885  7899998 57999999


Q ss_pred             HHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhc-CCCEEEEe
Q psy1766          93 ARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAE-RTNTVTVP  137 (214)
Q Consensus        93 a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~vv~~  137 (214)
                      |+|.|++.|+|+||+|+|+|+.+.|++|+.+++.+.+ +.++++++
T Consensus        75 a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~~  120 (240)
T 3bcv_A           75 ACNSGLDVATGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFTG  120 (240)
T ss_dssp             HHHHHHHHCCSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC-
T ss_pred             HHHHHHHHcCCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEEe
Confidence            9999999999999999999999999999999999976 55555543

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*

Probab=99.94  E-value=2.9e-26  Score=182.38  Aligned_cols=120  Identities=18%  Similarity=0.289  Sum_probs=107.8

Q ss_pred             CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC--------C
Q psy1766          15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS--------K   86 (214)
Q Consensus        15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~--------~   86 (214)
                      |+||||||+||++ +.|.+||+|+++|++++  +|||||||||+  |+|.++++++..   ++++++++.+        +
T Consensus         1 p~vSViIp~yn~~-~~l~~~l~Sl~~q~~~~--~eiivvDd~S~--d~t~~~~~~~~~---~~~i~~i~~~~~~~~~~~~   72 (255)
T 1qg8_A            1 PKVSVIMTSYNKS-DYVAKSISSILSQTFSD--FELFIMDDNSN--EETLNVIRPFLN---DNRVRFYQSDISGVKERTE   72 (255)
T ss_dssp             CCEEEEEEESSCT-TTHHHHHHHHHTCSCCC--EEEEEEECSCC--HHHHHHHGGGGG---STTEEEEECCCCSHHHHHS
T ss_pred             CeEEEEEEcCCCH-HHHHHHHHHHHhccCCc--eEEEEEECCCC--chHHHHHHHHhh---cCCEEEEeccccccccccc
Confidence            6899999999999 99999999999999987  79999999999  899999998865   3789999988        7


Q ss_pred             CcchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcC-CCEEEEeeeeee
Q psy1766          87 REGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAER-TNTVTVPIIDII  142 (214)
Q Consensus        87 ~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~-~~~vv~~~~~~~  142 (214)
                      |.|.+.|+|.|++.|+|+||+|+|+|+.+.|++|+.+++.+.++ ...++++....+
T Consensus        73 n~G~~~a~N~gi~~a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~  129 (255)
T 1qg8_A           73 KTRYAALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTY  129 (255)
T ss_dssp             SCHHHHHHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEE
T ss_pred             ccCHHHHHHHHHHHcCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEeceEEE
Confidence            99999999999999999999999999999999999999999765 445555555444

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*

Probab=99.91  E-value=9.6e-24  Score=188.09  Aligned_cols=124  Identities=19%  Similarity=0.161  Sum_probs=109.4

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR   92 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~   92 (214)
                      .+|+||||||+||++ +.|.+||+|+++|++++  +|||||||||+  |+|.++++++..++  ++++++. .+|.|.+.
T Consensus       373 ~~~~vsiii~~yn~~-~~l~~~l~s~~~q~~~~--~eiivvdd~S~--d~t~~~~~~~~~~~--~~i~~~~-~~n~G~~~  444 (625)
T 2z86_A          373 RVPLVSIYIPAYNCS-KYIVRCVESALNQTITD--LEVCICDDGST--DDTLRILQEHYANH--PRVRFIS-QKNKGIGS  444 (625)
T ss_dssp             SSCSEEEEEEESSCT-TTHHHHHHHHHSSSCCS--EEEEEEEESCS--SSHHHHHHHHHTTC--TTEEEEE-ECCCCHHH
T ss_pred             cCCeEEEEEeCCCCH-HHHHHHHHHHHhCcCCC--eEEEEEECcCC--hhHHHHHHHHHhhC--CcEEEEe-CCCCCHHH
Confidence            468999999999999 99999999999999987  79999999999  89999999987764  7899987 67999999


Q ss_pred             HHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCC-CEEEEeeeeeecC
Q psy1766          93 ARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERT-NTVTVPIIDIINA  144 (214)
Q Consensus        93 a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~-~~vv~~~~~~~~~  144 (214)
                      |+|.|++.|+|+||+|+|+|+.+.|++|+.+++.+.+++ ..++++....++.
T Consensus       445 a~n~g~~~a~g~~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~  497 (625)
T 2z86_A          445 ASNTAVRLCRGFYIGQLDSDDFLEPDAVELCLDEFRKDLSLACVYTTNRNIDR  497 (625)
T ss_dssp             HHHHHHHHCCSSEEEECCTTCEECTTHHHHHHHHHHHCTTCSEEEEEEEEECT
T ss_pred             HHHHHHHhcCCCEEEEECCCcccChhHHHHHHHHHHhCCCeeEEEeeeEEECC
Confidence            999999999999999999999999999999999996554 3455554444443

>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*

Probab=99.90  E-value=7.6e-26  Score=205.04  Aligned_cols=118  Identities=18%  Similarity=0.306  Sum_probs=0.0

Q ss_pred             CCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHH
Q psy1766          14 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRA   93 (214)
Q Consensus        14 ~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a   93 (214)
                      ||+||||||+||++ +.|.+||+|+++|++++  +|||||||||+  |+|.++++++..++ ++++++++.++|.|.+.|
T Consensus         1 Mp~vSVIIp~yN~~-~~L~~~L~Sll~Qt~~~--~EIIVVDDgSt--D~t~~il~~~~~~~-~~~i~~i~~~~n~G~~~a   74 (729)
T 3l7i_A            1 MNKLTIIVTYYNAE-EYITGCLESIKQQRTQD--FNLIIVNDGST--DQSKKLMDEAIKDY-DKNIRFIDLDENSGHAHA   74 (729)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceEEEEEEcCCCH-HHHHHHHHHHHhCCCCC--eEEEEEECCCC--CcHHHHHHHHHHhC-CCCEEEEECCCCCCHHHH
Confidence            78999999999999 99999999999999987  79999999999  89999999998875 468999998889999999


Q ss_pred             HHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEee
Q psy1766          94 RMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPI  138 (214)
Q Consensus        94 ~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~  138 (214)
                      +|.|++.|+|+||+|+|+|+.+.|++|+.+++.+. +.++++++.
T Consensus        75 rN~gi~~A~gdyI~flD~Dd~~~p~~l~~l~~~l~-~~d~v~~~~  118 (729)
T 3l7i_A           75 RNIALEEVETPYFMFLDADDELASYAITFYLEKFN-NTDGLIAPI  118 (729)
T ss_dssp             ---------------------------------------------
T ss_pred             HHHHHHhccCCEEEEECCCCCCChhHHHHHHHHhc-CCCEEEEee
Confidence            99999999999999999999999999999999998 556665544

>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A

Probab=99.88  E-value=2.1e-23  Score=172.60  Aligned_cols=122  Identities=15%  Similarity=0.141  Sum_probs=100.0

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEE-cCCCcchH
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYR-TSKREGLI   91 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~-~~~~~G~~   91 (214)
                      .+|+||||||+||++ +.|.+||+|+++|+++.. +|||||||||+  |+|.++++++..+. ...++++. .+.|.|++
T Consensus        46 ~~~~vSViIp~yN~~-~~l~~~l~sl~~q~~~~~-~eiivVDdgS~--D~t~~~~~~~~~~~-~~~~~~~~~~~~n~G~~  120 (329)
T 3ckj_A           46 AGRTISVVLPALDEE-DTIGSVIDSISPLVDGLV-DELIVLDSGST--DDTEIRAVAAGARV-VSREQALPEVPIRPGKG  120 (329)
T ss_dssp             TTCCEEEEEEESSCT-TTHHHHHHHHGGGBTTTB-SEEEEEECSCC--SSHHHHHHHTTCEE-EEHHHHCTTSCCCCSHH
T ss_pred             cCCcEEEEEeeCCCH-HHHHHHHHHHHHhhCCCC-cEEEEEeCCCC--chHHHHHHHhhhhh-ccceeeeccCCCCCCHH
Confidence            468999999999999 999999999999997632 79999999999  89999998864331 11222232 57899999


Q ss_pred             HHHHhhhhhcCCCEEEEEcCCCc-cCcCchHHHHHHHhcC-CCEEEEeee
Q psy1766          92 RARMFGAKYATGKVLVFLDSHIE-VNTHWLEPLLVPIAER-TNTVTVPII  139 (214)
Q Consensus        92 ~a~n~g~~~a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~-~~~vv~~~~  139 (214)
                      .|+|.|++.|+|+||+|+|+|+. +.|++|+.+++.+.++ ...++++..
T Consensus       121 ~a~n~g~~~a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v~g~~  170 (329)
T 3ckj_A          121 EALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKSFY  170 (329)
T ss_dssp             HHHHHHHHHCCCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEEEEEE
T ss_pred             HHHHHHHHhCCCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEEEEEe
Confidence            99999999999999999999999 8999999999997554 334454443

>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*

Probab=99.87  E-value=6.9e-22  Score=176.11  Aligned_cols=126  Identities=20%  Similarity=0.234  Sum_probs=107.3

Q ss_pred             CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC-Ccch
Q psy1766          12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK-REGL   90 (214)
Q Consensus        12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~-~~G~   90 (214)
                      ..+|+||||||+||+. +.|.+||+|+..|+++. .+|||||||||+  |++.++++++...   .+++++..+. +.|.
T Consensus        90 ~~~p~vsviIp~~n~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~--d~t~~~~~~~~~~---~~i~~i~~~~~~~g~  162 (625)
T 2z86_A           90 LIIDGLSIVIPTYNRA-KILAITLACLCNQKTIY-DYEVIVADDGSK--ENIEEIVREFESL---LNIKYVRQKDYGYQL  162 (625)
T ss_dssp             CCCCCEEEEEEESSCH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCS--SCHHHHHHTTTTT---SCEEEEEECCCSCCH
T ss_pred             ccCCcEEEEEecCCcH-HHHHHHHHHHHhhccCC-CeEEEEEeCCCc--hhHHHHHHHhhhc---CCeEEEEeCCCCcch
Confidence            4578999999999999 99999999999997653 289999999999  8999999887543   5788888654 3469


Q ss_pred             HHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeeecC
Q psy1766          91 IRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINA  144 (214)
Q Consensus        91 ~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~  144 (214)
                      +.|+|.|++.|+|+||+|+|+|+.+.|+||+.++..+.+++..++++.....+.
T Consensus       163 ~~a~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~  216 (625)
T 2z86_A          163 CAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYIDT  216 (625)
T ss_dssp             HHHHHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHHHHCTTEEEECCEEEECC
T ss_pred             hHHHHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHHhcCCceEEEEeeeeccC
Confidence            999999999999999999999999999999999999987777666655444433

>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*

Probab=99.87  E-value=5.4e-22  Score=177.37  Aligned_cols=124  Identities=10%  Similarity=-0.000  Sum_probs=99.5

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCC---CCCccEEEEEECCCCCCCC--hHHHHHHHHhhcCCCcEEEEEcCCC
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTG---QSLLHEIILVNDFSEYPSN--LHGEVETFVKGLNNGRVHLYRTSKR   87 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~---~~~~~eiivVdd~s~~~d~--t~~~~~~~~~~~~~~~v~~i~~~~~   87 (214)
                      ..|+||||||+||+. +.|.+||+||.+|++   ..  +|||||||||+  |.  +....+.....  .+++++++++ |
T Consensus       178 ~~pkVSVVIptYN~~-~~L~~~L~SL~~qt~~~~~~--~EIIVVDNgSt--D~s~~~~~~e~~~~~--~~~I~vI~~~-N  249 (657)
T 4fix_A          178 GTANIAVGIPTFNRP-ADCVNALRELTADPLVDQVI--GAVIVPDQGER--KVRDHPDFPAAAARL--GSRLSIHDQP-N  249 (657)
T ss_dssp             SCCCEEEECCBSSCH-HHHHHHHHHHTTSHHHHTTE--EEEEEEECSSS--CGGGSTTHHHHHHHH--GGGEEEEECC-C
T ss_pred             CCCeEEEEEEecCCH-HHHHHHHHHHHcCccccCCC--CEEEEEECcCC--CccchHHHHHHHHhc--CCCEEEEECC-C
Confidence            458999999999999 999999999999986   43  69999999998  42  22233222222  3689999977 9


Q ss_pred             cchHHHHHhhhhhc----CCCEEEEEcCCCccCcCchHHHHHHHhcCCC-EEEEeeeeeecC
Q psy1766          88 EGLIRARMFGAKYA----TGKVLVFLDSHIEVNTHWLEPLLVPIAERTN-TVTVPIIDIINA  144 (214)
Q Consensus        88 ~G~~~a~n~g~~~a----~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~-~vv~~~~~~~~~  144 (214)
                      .|.++|+|.|++.|    .+|||+|||+|+.+.|++|+.+++.++.++. .+++|.+...+.
T Consensus       250 ~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~il~~~~  311 (657)
T 4fix_A          250 LGGSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQMLNLQE  311 (657)
T ss_dssp             CHHHHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEEEEETTS
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeEEecCCC
Confidence            99999999999998    4589999999999999999999999976644 455555554443

>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*

Probab=99.86  E-value=2.5e-22  Score=169.37  Aligned_cols=119  Identities=13%  Similarity=0.111  Sum_probs=96.7

Q ss_pred             CCceEEEEEEeCCCchHHHHHHHHHHh---cCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcch
Q psy1766          14 LPSTSVIICFYNEHPATLYRSVQTLLS---RTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGL   90 (214)
Q Consensus        14 ~p~vSVIIp~~n~~~~~l~~~l~sl~~---q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~   90 (214)
                      .|+||||||+||++ +.|.+||+|+.+   |...+  +|||||||||+  |+|.++++++..+.....++++..+.|.|+
T Consensus        93 ~p~vSVVIP~yNe~-~~l~~~l~sl~~~l~~~~~~--~EIIVVDDgSt--D~T~~i~~~~~~~v~~~~~~~i~~~~n~G~  167 (387)
T 3f1y_A           93 GLTVSAVLPSRNVA-DTVGGIIDEIHALNERAPLI--DQILVVDADSE--DGTAGVAASHGAEVYSENELMSGYGDAHGK  167 (387)
T ss_dssp             TCCEEEEEEESSCT-TTHHHHHHHHHHHHHHSCCC--SEEEEEECSCS--SSHHHHHHHTTCEEEEGGGTTGGGCSCCSH
T ss_pred             CCeEEEEEEcCCCH-HHHHHHHHHHHHHHhcCCCC--eEEEEEcCcCC--ccHHHHHHHhCchhcccceeEecCCccCCH
Confidence            58999999999999 999999999976   34344  79999999999  899999998643310112223345679999


Q ss_pred             HHHHHhhhhhcCCCEEEEEcCCCc-cCcCchHHHHHHHhcC-CCEEEEe
Q psy1766          91 IRARMFGAKYATGKVLVFLDSHIE-VNTHWLEPLLVPIAER-TNTVTVP  137 (214)
Q Consensus        91 ~~a~n~g~~~a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~-~~~vv~~  137 (214)
                      +.|+|.|++.|+|+||+|+|+|+. +.|++|+.+++.+.++ ...++++
T Consensus       168 g~A~n~G~~~A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~d~v~G  216 (387)
T 3f1y_A          168 GDAMWRALSVTRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKA  216 (387)
T ss_dssp             HHHHHHHTTTCCSSEEEECCTTCSSCCTHHHHTTHHHHHHSTTCCEEEE
T ss_pred             HHHHHHHHHhcCCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCCceEEEE
Confidence            999999999999999999999999 8999999999999765 3344443

>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}

Probab=99.82  E-value=9.2e-20  Score=166.56  Aligned_cols=128  Identities=16%  Similarity=0.204  Sum_probs=104.5

Q ss_pred             CCCCCceEEEEEEeCCCchHH-HHHHHHHHhcCCCCCccEEEEEECCCCCCCCh---------------HHHHHHHHhhc
Q psy1766          11 PSTLPSTSVIICFYNEHPATL-YRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL---------------HGEVETFVKGL   74 (214)
Q Consensus        11 ~~~~p~vSVIIp~~n~~~~~l-~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t---------------~~~~~~~~~~~   74 (214)
                      ++..|+||||||+||++ +.+ .+||+|+.+|++++..+|||||||||+  |++               .+.++++.++.
T Consensus       136 ~~~~P~VSViIPtyNe~-~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgSt--D~T~~~~d~~i~~~~~~~~~~l~~~~~~~  212 (802)
T 4hg6_A          136 PEELPTVDILVPSYNEP-ADMLSVTLAAAKNMIYPARLRTVVLCDDGGT--DQRCMSPDPELAQKAQERRRELQQLCREL  212 (802)
T ss_dssp             TTTCCCEEEEEECTTCC-HHHHHHHHHHHHTSSCCTTCCEEEEESTTCH--HHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCcEEEEEEECCCC-HHHHHHHHHHHHhccCCCCcEEEEEEECCCC--ccccccCCHHHHHHHHhhhHHHHHHHHhc
Confidence            35679999999999999 666 899999999999876679999999999  777               33456666654


Q ss_pred             CCCcEEEEEcCCC-cchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCC-EEEEeeeeeecC
Q psy1766          75 NNGRVHLYRTSKR-EGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTN-TVTVPIIDIINA  144 (214)
Q Consensus        75 ~~~~v~~i~~~~~-~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~-~vv~~~~~~~~~  144 (214)
                         +++++..+++ .|++.|+|.|++.++||||+++|+|+.++|++++++++.+.+++. .++++.....+.
T Consensus       213 ---~v~~i~~~~~~~GKa~alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~v~~V~~~~~~~~~  281 (802)
T 4hg6_A          213 ---GVVYSTRERNEHAKAGNMSAALERLKGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFFINP  281 (802)
T ss_dssp             ---TCEEEECSSCCSHHHHHHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHHHHSSSCCEEECCCCBSSC
T ss_pred             ---CcEEEEecCCCCcchHHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHHhcCCCeEEEeccEEEeCC
Confidence               6777776655 789999999999999999999999999999999999999965544 445544444333

>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*

Probab=99.73  E-value=2.4e-17  Score=131.06  Aligned_cols=89  Identities=11%  Similarity=0.060  Sum_probs=73.9

Q ss_pred             CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchH
Q psy1766          12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLI   91 (214)
Q Consensus        12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~   91 (214)
                      +..|++||| |+||+. +.|.+||+|+.+.......+|||||||+|+  |.                         .|.+
T Consensus        13 ~~~~~iSII-~~yN~~-~~l~~~l~sl~~sl~~q~~~EiIVVDn~s~--d~-------------------------~g~a   63 (249)
T 2nxv_A           13 ESTLMFSVC-SLVRDQ-AKYDRLLESFERFGFTPDKAEFLAADNREG--NQ-------------------------FHGF   63 (249)
T ss_dssp             CCCCSEEEE-EEESCH-HHHHHHHHHHHHTTCCTTTEEEEEEECTTS--CS-------------------------CCTT
T ss_pred             CCcceEEEE-EeeCCH-HHHHHHHHHHHHhccCCCcEEEEEEECCCC--Cc-------------------------ccHH
Confidence            345789975 679998 999999998765322111179999999998  41                         2668


Q ss_pred             HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhc
Q psy1766          92 RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAE  129 (214)
Q Consensus        92 ~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~  129 (214)
                      .|+|.|++.|+|+||+|||+|+.++++||+.+++.+++
T Consensus        64 ~a~N~Gi~~A~g~yl~fln~D~~~~~~~l~~l~~~~~~  101 (249)
T 2nxv_A           64 SWHKQMLPRCKGRYVIFCHEDVELVDRGYDDLVAAIEA  101 (249)
T ss_dssp             THHHHHGGGCCSSEEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEECCCcccCccHHHHHHHHHHh
Confidence            99999999999999999999999999999999999876

>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*

Probab=99.69  E-value=1.3e-16  Score=130.06  Aligned_cols=99  Identities=16%  Similarity=0.169  Sum_probs=82.4

Q ss_pred             CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCCh---HHHHHHHHhhcCCCcEEEEEcCCCcchH
Q psy1766          15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL---HGEVETFVKGLNNGRVHLYRTSKREGLI   91 (214)
Q Consensus        15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t---~~~~~~~~~~~~~~~v~~i~~~~~~G~~   91 (214)
                      +++|||||+||++ ..   +|+++++|.+.+  +|||+|||||+  |.+   .+++++++... +.++.+++ ++|.|.+
T Consensus        53 ~klSIVVPvYNEe-~~---lLesVl~qi~~d--~eIIlVdDGS~--D~s~~e~dil~~~~~~~-~~ri~viH-Qkn~gls  122 (391)
T 2wvl_A           53 EQTAIVVPTRNER-LK---LLEGVLSGIPHE--ALILVASNSSP--DRFQMERDLLEEFAHLT-ERPALIFH-QKDPALA  122 (391)
T ss_dssp             TTEEEEEEESSCC-HH---HHHHHHHTSCTT--SEEEEEECCCH--HHHHHHHHHHHHHHHHT-TCCEEEEE-TTCHHHH
T ss_pred             hceEEEEeccCcH-HH---HHHHHHhcCCCC--ceEEEEECCCC--CChHhHHHHHHHHHhhc-ccceEEEe-ccChHHH
Confidence            6899999999999 54   699999999988  79999999999  888   56888998743 47899998 6799999


Q ss_pred             HHHH-h----------------------hhhhc---CCCEEEEEcCCCccCcCchHHH
Q psy1766          92 RARM-F----------------------GAKYA---TGKVLVFLDSHIEVNTHWLEPL  123 (214)
Q Consensus        92 ~a~n-~----------------------g~~~a---~gd~i~~lD~D~~~~~~~l~~l  123 (214)
                      .|+| .                      |+..|   .|+||.|+|+|+.++.+..+..
T Consensus       123 ~Ar~~~G~~~il~~~~~vR~GKGegmi~Gi~~Ak~~~geYVgFvDADdyi~~~v~Eyv  180 (391)
T 2wvl_A          123 EALRAGGYPHPIGEDGLVRSGKAEGMILALVFAALSGRRYVGFIDADNYFPGAVWEYV  180 (391)
T ss_dssp             HHHHHTTCCTTBCTTSSBCCSHHHHHHHHHHHHHHTTCSEEEECCSCBSCHHHHHHHH
T ss_pred             HHHHhcCcchhhcccccccccchHHHHHHHHHHHhcCCCEEEEEcCcCCCccCHHHHH
Confidence            9996 3                      45555   7999999999999966654443

>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*

Probab=99.66  E-value=5e-16  Score=130.94  Aligned_cols=113  Identities=11%  Similarity=0.077  Sum_probs=83.9

Q ss_pred             EEEEEEeCCCchHHHHHHHHHHh-cCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC---CCcEEEEEcC--C--Ccc
Q psy1766          18 SVIICFYNEHPATLYRSVQTLLS-RTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN---NGRVHLYRTS--K--REG   89 (214)
Q Consensus        18 SVIIp~~n~~~~~l~~~l~sl~~-q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~---~~~v~~i~~~--~--~~G   89 (214)
                      |+|||.+|++  .+..++.++.. +..+.  +|||||||||+  |+|.+++++++.+.+   ..++..+...  .  |.|
T Consensus         2 slVIiP~~eE--~I~~vl~~l~~~~~~~~--~EIIVVDDGSt--D~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n~G   75 (397)
T 2bo4_A            2 SLVVFPFKHE--HPEVLLHNVRVAAAHPR--VHEVLCIGYER--DQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPG   75 (397)
T ss_dssp             CEEEEECCSS--CHHHHHHHHHHHHHSTT--CCEEEEEESSC--CHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSS
T ss_pred             cEEEEeCCcc--CHHHHHHHHHHhccCCC--eEEEEEECcCC--ccHHHHHHHhhhhcccccCCeEEEEecccCCCCCCC
Confidence            4455555554  46677777642 33344  69999999999  999999996654431   2234333322  3  899


Q ss_pred             hHHHHHhhh----hhcCCCEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEEE
Q psy1766          90 LIRARMFGA----KYATGKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus        90 ~~~a~n~g~----~~a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~  136 (214)
                      ++.|.+.|+    +.++||+|+++|+|.. .+|+++..+++.+.++.+.|+.
T Consensus        76 kG~Al~~G~~~Al~~a~gd~vv~mDADlq~~~P~~i~~Ll~~l~~g~D~V~g  127 (397)
T 2bo4_A           76 KGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADFGYGLVRH  127 (397)
T ss_dssp             HHHHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHHHcCCCEEEE
Confidence            999999999    8899999999999996 8999999999999777665554

>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...

Probab=99.55  E-value=1.2e-14  Score=117.81  Aligned_cols=78  Identities=18%  Similarity=0.110  Sum_probs=67.4

Q ss_pred             CCCCceEEEEEEeCCCchHHHHHHHHHH---hcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCc
Q psy1766          12 STLPSTSVIICFYNEHPATLYRSVQTLL---SRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKRE   88 (214)
Q Consensus        12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~---~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~   88 (214)
                      ...|+||||||+||++ +.|.+||.|+.   +|++.+  +|||||||+++   .                        .+
T Consensus        62 ~~~~~VSIIIP~yN~~-~~L~~~L~sl~~~l~q~~~~--~EIiVVdds~d---~------------------------~f  111 (287)
T 2fy7_A           62 VSPHKVAIIIPFRNRQ-EHLKYWLYYLHPVLQRQQLD--YGIYVINQAGD---T------------------------IF  111 (287)
T ss_dssp             BCSCEEEEEEEESSCH-HHHHHHHHHHHHHHHHTTCE--EEEEEEEECSS---S------------------------CC
T ss_pred             CcCCcEEEEEeeCCCH-HHHHHHHHHHHHHHHHhcCC--ceEEEEEeCCC---C------------------------cc
Confidence            3468999999999999 99999999998   687776  89999999543   1                        12


Q ss_pred             chHHHHHhhh----hhcCCCEEEEEcCCCccCcCc
Q psy1766          89 GLIRARMFGA----KYATGKVLVFLDSHIEVNTHW  119 (214)
Q Consensus        89 G~~~a~n~g~----~~a~gd~i~~lD~D~~~~~~~  119 (214)
                      +.+.++|.|+    +.|+|+||+|+|+|+.+.+++
T Consensus       112 ~~a~a~N~G~~~al~~A~gd~i~flD~D~i~~~d~  146 (287)
T 2fy7_A          112 NRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDH  146 (287)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEEECTTEEESBTT
T ss_pred             chhhhhhhHHHHHHHhCCCCEEEEECCCcccCCCc
Confidence            5688999999    899999999999999999996

>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*

Probab=99.51  E-value=1.5e-13  Score=114.69  Aligned_cols=104  Identities=17%  Similarity=0.197  Sum_probs=79.4

Q ss_pred             CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCCh------HHHHHHHHhhcCCCcEEEEEcCC--
Q psy1766          15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL------HGEVETFVKGLNNGRVHLYRTSK--   86 (214)
Q Consensus        15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t------~~~~~~~~~~~~~~~v~~i~~~~--   86 (214)
                      .++|||||+|||+ ..+   |..++.+....  +|||||||||+  |++      .+.+++++... +..+.+++...  
T Consensus        51 ~~iSVVIP~yNEE-~~l---I~~vL~~i~~~--~eIIvVDDgSr--D~tD~~~~~~~~l~~~~~~~-~~~~~Vl~~~~p~  121 (394)
T 2zu9_A           51 GKMAVIVPMKNEK-LHL---VDGVLKAIPHK--CPIIIVSNSKR--EGPNRYKLEVDLIRHFYNLT-HSKIIMIHQKDPG  121 (394)
T ss_dssp             TTEEEEEEESSCC-HHH---HHHHHHHSCTT--SCEEEEECCCC--SSSCHHHHHHHHHHHHHHHH-CCCEEEEETTCHH
T ss_pred             CCEEEEEecCccc-HHH---HHHHHHcCCCC--cEEEEEECcCc--ccccchhhHHHHHHHHhhcc-ccceEEEecCCcc
Confidence            4799999999999 554   56666665544  79999999998  666      67777776653 24566666433  


Q ss_pred             --------------------CcchHHHHHhhhhhc---CCCEEEEEcCCCccCcCchHHHHHHHh
Q psy1766          87 --------------------REGLIRARMFGAKYA---TGKVLVFLDSHIEVNTHWLEPLLVPIA  128 (214)
Q Consensus        87 --------------------~~G~~~a~n~g~~~a---~gd~i~~lD~D~~~~~~~l~~l~~~~~  128 (214)
                                          +.|++.|.-.|+..|   +|++|+|+|+|. ..|..+.++++.+.
T Consensus       122 v~~~~~~~g~~~il~~~~~~r~GKG~Am~aGl~~A~~~~gd~Vv~~DaDl-~iP~~v~~~~kgy~  185 (394)
T 2zu9_A          122 LAKAFKEVGYTDILDENGMIRSGKGEGMLVGLLLAKAIGAEYVGFVDADN-YIPGAVNEYVKDYA  185 (394)
T ss_dssp             HHHHHHHHTCCTTBCTTSSBCCSHHHHHHHHHHHHHHTTCSEEEECCSCB-SCHHHHHHHHHHHH
T ss_pred             hhHHhhhccccccccccccccCChHHHHHHHHHHHhhCCCCEEEEEeCCC-CCHHHHHHHHHHhh
Confidence                                149999999999999   999999999999 56776766666544

>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*

Probab=99.39  E-value=2e-12  Score=106.81  Aligned_cols=113  Identities=13%  Similarity=0.145  Sum_probs=86.5

Q ss_pred             CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEE---------cC
Q psy1766          15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYR---------TS   85 (214)
Q Consensus        15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~---------~~   85 (214)
                      +.++|||++||+. + |.++|+||++|.+....++|||.|||+.  +++.++++++..     .|..+.         .+
T Consensus         2 ~~~pViI~~yNRp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~--~~~~~vi~~~~~-----~I~~~~~~d~~~~~~~~   72 (343)
T 1fo8_A            2 AVIPILVIACDRS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGH--EETAQVIASYGS-----AVTHIRQPDLSNIAVQP   72 (343)
T ss_dssp             CCCCEEEEESSCT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTC--HHHHHHHHTTGG-----GSEEEECSCCCCCCCCT
T ss_pred             CcccEEEEECCcH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCC--HHHHHHHHHcCC-----ceEEEEcCCccccccch
Confidence            5689999999999 8 9999999999986554479999999998  788888887632     233332         24


Q ss_pred             CCcchH----------HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHH---HhcCCCEEEE
Q psy1766          86 KREGLI----------RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVP---IAERTNTVTV  136 (214)
Q Consensus        86 ~~~G~~----------~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~---~~~~~~~vv~  136 (214)
                      +|.|..          .|+|.+++.+++++++++|+|+.+.|+|++-+.+.   ++.++.+.++
T Consensus        73 ~N~g~~~y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~~l~~y~~D~~I~~I  136 (343)
T 1fo8_A           73 DHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCV  136 (343)
T ss_dssp             TCGGGHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEEE
T ss_pred             hhcCcccchhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHHHHHHhhcCCcEEEE
Confidence            565643          56666677778999999999999999998665554   4566665544

>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens}

Probab=97.35  E-value=0.0029  Score=49.27  Aligned_cols=103  Identities=20%  Similarity=0.196  Sum_probs=64.2

Q ss_pred             CCCceEEEEEEeCCC--chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC--Cc
Q psy1766          13 TLPSTSVIICFYNEH--PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK--RE   88 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~--~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~--~~   88 (214)
                      ++|.|-||.|+|.+.  ...|.+.-+.|. +. ++  .-.|||+|+...    .+.+.++.++. +-..+.+..+.  ++
T Consensus         1 ~~p~I~vVTPTy~R~~Q~a~LtRLa~TL~-~V-p~--l~WIVVEd~~~~----~~~v~~lL~~s-gl~y~HL~~~~~~~~   71 (246)
T 2d0j_A            1 QLPTIYAITPTYSRPVQKAELTRLANTFR-QV-AQ--LHWILVEDAAAR----SELVSRFLARA-GLPSTHLHVPTPRRY   71 (246)
T ss_dssp             CCCCEEEEEEECCSTTHHHHHHHHHHHHT-TS-TT--EEEEEEESSSSC----CHHHHHHHHHS-CSCEEEEECCCCCC-
T ss_pred             CCCEEEEEeCCCCccchhHHHHHHHHHHh-cC-Cc--eEEEEEcCCCCC----CHHHHHHHHHc-CCceEEEecCCcccc
Confidence            368899999999987  344444444443 33 33  489999998752    22333444443 22333333221  11


Q ss_pred             ------chHHHHHhhhhhcC---------CCEEEEEcCCCccCcCchHHHH
Q psy1766          89 ------GLIRARMFGAKYAT---------GKVLVFLDSHIEVNTHWLEPLL  124 (214)
Q Consensus        89 ------G~~~a~n~g~~~a~---------gd~i~~lD~D~~~~~~~l~~l~  124 (214)
                            .....||.|++..+         .-+|.|.|+|..++-..++++.
T Consensus        72 ~~~~~prg~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtY~l~LF~emR  122 (246)
T 2d0j_A           72 KRPGLPRATEQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMR  122 (246)
T ss_dssp             ---CCCCCHHHHHHHHHHHHHHSCSSSCCCCEEEECCTTCEECTHHHHHHT
T ss_pred             CCCCCcchHHHHHHHHHHHHHhcccccCccceEEEccCCCcccHHHHHHHh
Confidence                  12478999996642         3688999999999988888754

>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A*

Probab=97.19  E-value=0.0012  Score=51.55  Aligned_cols=101  Identities=16%  Similarity=0.161  Sum_probs=64.8

Q ss_pred             CCCceEEEEEEeCCC--chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc--CC--
Q psy1766          13 TLPSTSVIICFYNEH--PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT--SK--   86 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~--~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~--~~--   86 (214)
                      .+|.|-||.|+|.+.  ...|.+.-+.| .+. ++  .-.|||+|+....+.+.+++++-       ++.+.+.  +.  
T Consensus         1 ~~p~I~vVTPTy~R~~Q~a~LtRLa~TL-~~V-p~--L~WIVVEd~~~~t~~va~lL~~s-------gl~y~HL~~~~p~   69 (253)
T 1v84_A            1 ALPTIHVVTPTYSRPVQKAELTRMANTL-LHV-PN--LHWLVVEDAPRRTPLTARLLRDT-------GLNYTHLHVETPR   69 (253)
T ss_dssp             -CCEEEEEEEECCSTTHHHHHHHHHHHH-TTS-SS--EEEEEEESSSSCCHHHHHHHHHH-------CCEEEEEECCCCH
T ss_pred             CCCEEEEEeCCCCccchhHHHHHHhhhh-ccC-Cc--eEEEEEeCCCCCCHHHHHHHHHc-------CCceEEeecCCCc
Confidence            368899999999987  44555555555 333 35  58999999753103444444442       4444433  21  


Q ss_pred             C------------cchHHHHHhhhhhcC---------CCEEEEEcCCCccCcCchHHHH
Q psy1766          87 R------------EGLIRARMFGAKYAT---------GKVLVFLDSHIEVNTHWLEPLL  124 (214)
Q Consensus        87 ~------------~G~~~a~n~g~~~a~---------gd~i~~lD~D~~~~~~~l~~l~  124 (214)
                      +            .-....||.|++..+         .-+|.|.|+|..++-..+++|-
T Consensus        70 ~~~~~~~~~~~~~~rg~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtYdl~LF~emR  128 (253)
T 1v84_A           70 NYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEMR  128 (253)
T ss_dssp             HHHCC-------CCTTHHHHHHHHHHHHHHSCSSSCCCEEEEECCTTSEECHHHHHHHH
T ss_pred             cccccccccCccccchHHHHHHHHHHHHHhcccccccceeEEEecCCCcccHHHHHHHh
Confidence            1            112468999997653         3578899999999988888754

>3cu0_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 3; glcat-I, glycosyltransferase, heparan sulfate biosynthesis, glycoprotein; HET: GAL UDP; 1.90A {Homo sapiens} SCOP: c.68.1.7 PDB: 1kws_A* 1fgg_A*

Probab=97.14  E-value=0.0038  Score=49.31  Aligned_cols=104  Identities=17%  Similarity=0.099  Sum_probs=61.8

Q ss_pred             CCCCCceEEEEEEeCCC--chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCc
Q psy1766          11 PSTLPSTSVIICFYNEH--PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKRE   88 (214)
Q Consensus        11 ~~~~p~vSVIIp~~n~~--~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~   88 (214)
                      ....|.|-||.|+|.+.  ...|.+.-+.| .+.+ +  .-.|||+|+....+.+.+++++-     +-..+.+..+.+.
T Consensus        17 ~~~~p~IivVTPTy~R~~Q~a~LtRLa~TL-~~Vp-~--L~WIVVEd~~~~t~~va~lL~rs-----Gl~y~HL~~~~p~   87 (281)
T 3cu0_A           17 RGSHMTIYVVTPTYARLVQKAELVRLSQTL-SLVP-R--LHWLLVEDAEGPTPLVSGLLAAS-----GLLFTHLVVLTPK   87 (281)
T ss_dssp             ----CEEEEEEEECCSTTHHHHHHHHHHHH-TTSS-S--EEEEEEESSSSCCHHHHHHHHHH-----CSEEEEEECCCC-
T ss_pred             CCCCCeEEEEeCCCCCcchhHHHHHHHHHH-hcCC-c--eEEEEEcCCCCCCHHHHHHHHHc-----CCceEEeccCCCc
Confidence            35678999999999987  33444444443 3333 4  58999999753103444444442     1223333222111


Q ss_pred             --------------chHHHHHhhhhhcC-----------------CCEEEEEcCCCccCcCchHHH
Q psy1766          89 --------------GLIRARMFGAKYAT-----------------GKVLVFLDSHIEVNTHWLEPL  123 (214)
Q Consensus        89 --------------G~~~a~n~g~~~a~-----------------gd~i~~lD~D~~~~~~~l~~l  123 (214)
                                    -....||.|++..+                 .-+|.|.|+|..++-..+++|
T Consensus        88 ~~~~~~~dp~w~~~rg~~QRN~AL~~Ir~~~~~~~~~~~~~~~~~~GVVyFADDDNtYsl~LFdem  153 (281)
T 3cu0_A           88 AQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEM  153 (281)
T ss_dssp             ----------CCCCCSHHHHHHHHHHHTTCCCEEEECCSCCCTTCCEEEEECCTTSEECHHHHHHH
T ss_pred             cccccccccccccchhHHHHHHHHHHHHhhccccchhccccccCCceeEEEecCCCcccHHHHHHh
Confidence                          12467999997665                 247789999999998888774

>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}

Probab=97.00  E-value=0.0033  Score=49.88  Aligned_cols=74  Identities=18%  Similarity=0.258  Sum_probs=55.2

Q ss_pred             CceEEEEEEeCCCchHHHHHHHH---HHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchH
Q psy1766          15 PSTSVIICFYNEHPATLYRSVQT---LLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLI   91 (214)
Q Consensus        15 p~vSVIIp~~n~~~~~l~~~l~s---l~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~   91 (214)
                      -+++||||.+|++ +.|...|.-   +++...-.  +.|+||+....                           ..+..+
T Consensus        51 ~kvAIIIPyRdR~-~hL~~fl~~lhp~L~rQ~l~--y~I~VieQ~~~---------------------------~~FNRa  100 (287)
T 3lw6_A           51 HKMALLVPFRDRF-EELLQFVPHMTAFLKRQGVA--HHIFVLNQVDR---------------------------FRFNRA  100 (287)
T ss_dssp             CEEEEEEEESSCH-HHHHHHHHHHHHHHHHTTCE--EEEEEEEECSS---------------------------SCCCHH
T ss_pred             ceEEEEEEeCCHH-HHHHHHHHHHHHHHHHcCCc--eEEEEEecCCC---------------------------Cccchh
Confidence            3799999999999 777666644   34433223  78999888532                           356778


Q ss_pred             HHHHhhhhhcC--CCEEEEEcCCCccCcC
Q psy1766          92 RARMFGAKYAT--GKVLVFLDSHIEVNTH  118 (214)
Q Consensus        92 ~a~n~g~~~a~--gd~i~~lD~D~~~~~~  118 (214)
                      ..+|.|+..|.  .|+++|-|.|..+..+
T Consensus       101 ~LlNvGf~ea~~~~d~~ifHDVDLlP~dd  129 (287)
T 3lw6_A          101 SLINVGFQFASDVYDYIAMHDVDLLPLND  129 (287)
T ss_dssp             HHHHHHHHHSCTTCCEEEEECTTEEECCT
T ss_pred             heecccHHHHhccCCEEEEecccccccCC
Confidence            89999998884  6999999999887654

>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*

Probab=96.90  E-value=0.0033  Score=50.36  Aligned_cols=114  Identities=13%  Similarity=0.079  Sum_probs=78.4

Q ss_pred             CCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHH
Q psy1766          14 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRA   93 (214)
Q Consensus        14 ~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a   93 (214)
                      ..+++|||-+|++. +.|.+.|+.+.....-   .||+||=++... .........+...  ...|+++....| .. ..
T Consensus        27 ~~~FTvvi~ty~R~-~~L~~lv~~~~~~~~v---~~IvVvWn~~~~-~pp~~~~~~~~~~--~vpv~v~~~~~n-sL-nn   97 (293)
T 1omz_A           27 LDSFTLIMQTYNRT-DLLLRLLNHYQAVPSL---HKVIVVWNNVGE-KGPEELWNSLGPH--PIPVIFKPQTAN-KM-RN   97 (293)
T ss_dssp             TTCEEEEEEESSCH-HHHHHHHHHHTTSTTE---EEEEEEECCTTC-CCTHHHHHHTCCC--SSCEEEEECSSC-CG-GG
T ss_pred             CCceEEEEEeeccc-HHHHHHHHHHhcCCCC---CeEEEEeCCCCC-CCChhhccccCCC--CccEEEEeCCCC-ch-hh
Confidence            34799999999997 8888888876433322   599988777642 2233333332111  246888876544 22 23


Q ss_pred             HHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766          94 RMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus        94 ~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~  136 (214)
                      |=.-....+++-|+.+|+|..++.+-|+.......+.++-+|+
T Consensus        98 RF~p~~~i~T~AVLslDDDv~l~~~el~faF~vWr~~PdRlVG  140 (293)
T 1omz_A           98 RLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIG  140 (293)
T ss_dssp             GGSCCTTCCSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEE
T ss_pred             ccCCCccCCcCEEEEEcCCCCCCHHHHHHHHHHHHHCccceec
Confidence            3334456689999999999999999999998988888776665

>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13

Probab=96.32  E-value=0.04  Score=42.98  Aligned_cols=88  Identities=13%  Similarity=0.174  Sum_probs=54.1

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhc---CCCE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA---TGKV  105 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a---~gd~  105 (214)
                      ..|..+++.+.+.. .   .+|+|+-+ +   +    .+.++..++ +..+.+...+...|.+.+.. +++..   ..+.
T Consensus        28 Pli~~~l~~l~~~~-~---~~ivVv~~-~---~----~i~~~~~~~-g~~v~~~~~~~~~Gt~~~~~-~~~~l~~~~~d~   93 (252)
T 3oam_A           28 PMIQWVYEQAMQAG-A---DRVIIATD-D---E----RVEQAVQAF-GGVVCMTSPNHQSGTERLAE-VVAKMAIPADHI   93 (252)
T ss_dssp             EHHHHHHHHHHHTT-C---SEEEEEES-C---H----HHHHHHHHT-TCEEEECCTTCCSHHHHHHH-HHHHTTCCTTSE
T ss_pred             EHHHHHHHHHHhCC-C---CeEEEECC-H---H----HHHHHHHHc-CCEEEEcCCCCCCcHHHHHH-HHHhcCcCCCCE
Confidence            46667777776543 2   38888764 2   2    333443443 23333333344566666443 44443   5789


Q ss_pred             EEEEcCCCc-cCcCchHHHHHHHhcC
Q psy1766         106 LVFLDSHIE-VNTHWLEPLLVPIAER  130 (214)
Q Consensus       106 i~~lD~D~~-~~~~~l~~l~~~~~~~  130 (214)
                      ++++++|.. +++..+..+++.+.++
T Consensus        94 vlv~~gD~Pli~~~~i~~l~~~~~~~  119 (252)
T 3oam_A           94 VVNVQGDEPLIPPAIIRQVADNLAAC  119 (252)
T ss_dssp             EEECCTTCTTCCHHHHHHHHHHHHHS
T ss_pred             EEEEeCCeeecCHHHHHHHHHHHHhc
Confidence            999999995 6889999999988653

>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*

Probab=96.22  E-value=0.028  Score=44.37  Aligned_cols=102  Identities=14%  Similarity=0.111  Sum_probs=62.1

Q ss_pred             CCceEEEEEEeCCC-------------chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEE
Q psy1766          14 LPSTSVIICFYNEH-------------PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVH   80 (214)
Q Consensus        14 ~p~vSVIIp~~n~~-------------~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~   80 (214)
                      .|++.+||++....             ...|..+++.+.+.. .   .+|+|+-+  .  +..    +++..++   +++
T Consensus        16 ~M~~~aIIlA~G~stRlp~K~L~~i~GkPmi~~~l~~l~~~~-i---~~IvV~t~--~--~~i----~~~~~~~---g~~   80 (264)
T 3k8d_A           16 HMSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESG-A---ERIIVATD--H--EDV----ARAVEAA---GGE   80 (264)
T ss_dssp             --CCEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHHTT-C---SEEEEEES--C--HHH----HHHHHHT---TCE
T ss_pred             CCceEEEEEcCCCCCCCCCcceeeECCeEHHHHHHHHHHhCC-C---CEEEEECC--H--HHH----HHHHHHc---CCE
Confidence            34688888887654             134556777766543 2   38888764  2  233    3333333   344


Q ss_pred             EEE--cCCCcchHHHHHhhhhhc---CCCEEEEEcCCCc-cCcCchHHHHHHHhcCC
Q psy1766          81 LYR--TSKREGLIRARMFGAKYA---TGKVLVFLDSHIE-VNTHWLEPLLVPIAERT  131 (214)
Q Consensus        81 ~i~--~~~~~G~~~a~n~g~~~a---~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~  131 (214)
                      ++.  .....|.+. ...+++..   ..++++++++|.. +++..+..+++.+.+..
T Consensus        81 v~~~~~~~~~Gt~~-i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~  136 (264)
T 3k8d_A           81 VCMTRADHQSGTER-LAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQ  136 (264)
T ss_dssp             EEECCTTCCSHHHH-HHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSS
T ss_pred             EEEecCCCCCCHHH-HHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcC
Confidence            443  334455544 33344433   5799999999995 58899999999986543

>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13

Probab=95.93  E-value=0.25  Score=37.65  Aligned_cols=90  Identities=12%  Similarity=0.088  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-----CCcchHHHHHhhhhhc-C
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-----KREGLIRARMFGAKYA-T  102 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-----~~~G~~~a~n~g~~~a-~  102 (214)
                      ..|..+++.+.+...-.   +|+|+-+  .  +.    +.++..++   ++.++..+     ...+...+...|++.. .
T Consensus        29 pli~~~i~~~~~~~~~~---~ivv~~~--~--~~----i~~~~~~~---g~~~~~~~~~~~~~~~~~~~~v~~al~~~~~   94 (229)
T 1qwj_A           29 PLIGWVLRAALDAGVFQ---SVWVSTD--H--DE----IENVAKQF---GAQVHRRSSETSKDSSTSLDAIVEFLNYHNE   94 (229)
T ss_dssp             EHHHHHHHHHHHHTCCS---EEEEEES--C--HH----HHHHHHHT---TCEEEECCGGGSSTTCCHHHHHHHHHTTCTT
T ss_pred             EHHHHHHHHHHhCCCcC---EEEEECC--h--HH----HHHHHHHc---CCEEEeChhhhcCCCCcHHHHHHHHHHhcCC
Confidence            56677777776554323   7877763  1  22    33333333   45555543     1234445666777776 5


Q ss_pred             CCEEEEEcCCCc-cCcCchHHHHHHHhcCCC
Q psy1766         103 GKVLVFLDSHIE-VNTHWLEPLLVPIAERTN  132 (214)
Q Consensus       103 gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~  132 (214)
                      .++++++++|.. +++..+..+++.+.++..
T Consensus        95 ~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~  125 (229)
T 1qwj_A           95 VDIVGNIQATSPCLHPTDLQKVAEMIREEGY  125 (229)
T ss_dssp             CSEEEEECTTCTTCCHHHHHHHHHHHHSSCC
T ss_pred             CCEEEEecCCCCcCCHHHHHHHHHHHHhCCC
Confidence            799999999986 478899999998865543

>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}

Probab=95.91  E-value=0.027  Score=42.26  Aligned_cols=46  Identities=22%  Similarity=0.221  Sum_probs=35.7

Q ss_pred             chHHHHHhhhhh----cCCCEEEEEcCC---CccCcCchHHHHHHHhcCCCEEEEe
Q psy1766          89 GLIRARMFGAKY----ATGKVLVFLDSH---IEVNTHWLEPLLVPIAERTNTVTVP  137 (214)
Q Consensus        89 G~~~a~n~g~~~----a~gd~i~~lD~D---~~~~~~~l~~l~~~~~~~~~~vv~~  137 (214)
                      -...|||..+..    .+.++++|+|+|   ..++|+.+.+++   +.+.++|++.
T Consensus        36 lI~raRN~lv~~Fl~~~~~dhllfIDAD~~~I~FdPe~V~rLl---~~g~DVV~Gs   88 (203)
T 2c0n_A           36 HVAVQREIALDMFLEMKDYDTLAFLDEDVVPIEIDFQKVEAKF---NEGYDVVCGY   88 (203)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCEEEEECTTEEEEECCHHHHHHHH---HHTCSEEEEE
T ss_pred             chHHHHHHHHHHHHhcCCCCEEEEEeCCCCccccCHHHHHHHH---hCCCCEEEEE
Confidence            456777777655    467999999999   999999999988   4566766653

>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0

Probab=95.87  E-value=0.14  Score=40.06  Aligned_cols=102  Identities=13%  Similarity=0.180  Sum_probs=62.4

Q ss_pred             CceEEEEEEeCCC-------------chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEE
Q psy1766          15 PSTSVIICFYNEH-------------PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHL   81 (214)
Q Consensus        15 p~vSVIIp~~n~~-------------~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~   81 (214)
                      |++.+|||+....             ...|..+++.+.+.. .   .+|+|+-+  .  +    .++++..++ +..+.+
T Consensus         8 M~~~aIIlA~G~stRl~~K~L~~i~GkPli~~~l~~l~~~~-i---~~VvVvt~--~--~----~i~~~~~~~-g~~v~~   74 (256)
T 3tqd_A            8 MEFRVIIPARFDSTRLPGKALVDIAGKPMIQHVYESAIKSG-A---EEVVIATD--D--K----RIRQVAEDF-GAVVCM   74 (256)
T ss_dssp             -CCEEEEECCCC---CTTGGGCEETTEEHHHHHHHHHHHTT-C---SEEEEEES--C--H----HHHHHHHHT-TCEEEE
T ss_pred             CCceEEEEcCCCCCCCCCCCeeeECCchHHHHHHHHHHhCC-C---CEEEEECC--H--H----HHHHHHHHc-CCeEEE
Confidence            4688888886544             135667777776543 2   38888754  1  2    333333343 223333


Q ss_pred             EEcCCCcchHHHHHhhhhhc---CCCEEEEEcCCCc-cCcCchHHHHHHHhcC
Q psy1766          82 YRTSKREGLIRARMFGAKYA---TGKVLVFLDSHIE-VNTHWLEPLLVPIAER  130 (214)
Q Consensus        82 i~~~~~~G~~~a~n~g~~~a---~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~  130 (214)
                      ...+...|.+. ...|++..   ..++++++++|.. +++..+..+++.+.++
T Consensus        75 ~~~~~~~Gt~~-i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~  126 (256)
T 3tqd_A           75 TSSDHQSGTER-IAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEH  126 (256)
T ss_dssp             CCTTCCSHHHH-HHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHHHHHHHHHC
T ss_pred             eCCCCCCcHHH-HHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHHHHHHHHhC
Confidence            23234456554 44455554   5799999999995 5789999999988654

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0

Probab=95.64  E-value=0.15  Score=40.39  Aligned_cols=121  Identities=8%  Similarity=0.088  Sum_probs=73.0

Q ss_pred             CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCc--c-
Q psy1766          13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKRE--G-   89 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~--G-   89 (214)
                      ++|.+-|++.+=+.-...+..++.|++..+... ...+.|+.++-+  ++..+.++++...+ +..++++..+...  + 
T Consensus         2 ~~m~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~~-~~~~~il~~~is--~~~~~~L~~~~~~~-~~~i~~~~~~~~~~~~~   77 (276)
T 3tzt_A            2 NAMADALLLTLDENYIPQMKVLMTSIYINNPGR-IFDVYLIHSRIS--EDKLKDLGEDLKKF-SYTLYPIRATDDLFSFA   77 (276)
T ss_dssp             ---CEEEEEECCGGGHHHHHHHHHHHHHHSTTC-CEEEEEEESCCC--HHHHHHHHHHHHTT-TCEEEEEECC-------
T ss_pred             CceeEEEEEEeCHhHHHHHHHHHHHHHHhCCCC-ceEEEEEeCCCC--HHHHHHHHHHHHHc-CCEEEEEEeCHHHHhcC
Confidence            457788887664333688899999998877632 267878888766  67778888887765 4566666543211  0 


Q ss_pred             --------hHHHHHhhhhhc--CCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEee
Q psy1766          90 --------LIRARMFGAKYA--TGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPI  138 (214)
Q Consensus        90 --------~~~a~n~g~~~a--~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~  138 (214)
                              ....|-..-...  .-+-++++|+|..+..+ +.++.+.=..+...++++.
T Consensus        78 ~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~d-i~~L~~~dl~~~~~aav~d  135 (276)
T 3tzt_A           78 KVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINP-LDDLLRTDISDYILAAASH  135 (276)
T ss_dssp             ------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSC-SHHHHTCCCTTSSEEEEEC
T ss_pred             ccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCC-HHHHhhcCCCCCeEEEEEe
Confidence                    112222223333  35899999999988765 5555543112344555543

>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A

Probab=95.57  E-value=0.07  Score=40.64  Aligned_cols=88  Identities=11%  Similarity=0.113  Sum_probs=55.5

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-----CCcchHHHHHhhhhhc--
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-----KREGLIRARMFGAKYA--  101 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-----~~~G~~~a~n~g~~~a--  101 (214)
                      ..|..+++.+.+.....   +|+|+-+.    +.    +.++..++   ++.++..+     ...|...+...|++..  
T Consensus        30 pll~~~l~~~~~~~~~~---~ivvv~~~----~~----i~~~~~~~---~~~~~~~~~~~~~~~~g~~~sv~~~l~~~~~   95 (228)
T 1ezi_A           30 SLLGHTINAAISSKCFD---RIIVSTDG----GL----IAEEAKNF---GVEVVLRPAELASDTASSISGVIHALETIGS   95 (228)
T ss_dssp             EHHHHHHHHHHHHCCCS---EEEEEESC----HH----HHHHHHHT---TCEEEECCC------CHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHhCCCCC---EEEEECCC----HH----HHHHHHHc---CCEEEeCchHHcCCCCChHHHHHHHHHHhCC
Confidence            46677787776554333   88887742    22    23333333   34444432     2345666777777776  


Q ss_pred             CCCEEEEEcCCCc-cCcCchHHHHHHHhcC
Q psy1766         102 TGKVLVFLDSHIE-VNTHWLEPLLVPIAER  130 (214)
Q Consensus       102 ~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~  130 (214)
                      ..++++++++|.. +++..+..+++.+.+.
T Consensus        96 ~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~  125 (228)
T 1ezi_A           96 NSGTVTLLQPTSPLRTGAHIREAFSLFDEK  125 (228)
T ss_dssp             CSEEEEECCTTCTTCCHHHHHHHHTTCCTT
T ss_pred             CCCEEEEEcCCCCcCCHHHHHHHHHHHHhc
Confidence            3589999999986 5788899998877544

>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*

Probab=95.33  E-value=0.54  Score=35.91  Aligned_cols=87  Identities=16%  Similarity=0.152  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC--CCcchHHHHHhhhhhcCCCEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS--KREGLIRARMFGAKYATGKVL  106 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~--~~~G~~~a~n~g~~~a~gd~i  106 (214)
                      ..|..+++.+.+.....   +|+||-+.    +    .+.++..++   ++.++..+  ...|.+.+. .|++....+.+
T Consensus        28 pli~~~i~~~~~~~~~~---~ivvv~~~----~----~i~~~~~~~---~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~   92 (245)
T 1h7e_A           28 PMIQHVYERALQVAGVA---EVWVATDD----P----RVEQAVQAF---GGKAIMTRNDHESGTDRLV-EVMHKVEADIY   92 (245)
T ss_dssp             EHHHHHHHHHHTCTTCC---EEEEEESC----H----HHHHHHHHT---TCEEEECCSCCSSHHHHHH-HHHHHSCCSEE
T ss_pred             hHHHHHHHHHHhCCCCC---eEEEECCc----H----HHHHHHHHc---CCeEEeCCCccCCcHHHHH-HHHHhCCCCEE
Confidence            57777888876554323   88887642    1    334444433   56666642  334555554 45555567999


Q ss_pred             EEEcCCCc-cCcCchHHHHHHHhcC
Q psy1766         107 VFLDSHIE-VNTHWLEPLLVPIAER  130 (214)
Q Consensus       107 ~~lD~D~~-~~~~~l~~l~~~~~~~  130 (214)
                      +++++|.. +++..+..+++.+.++
T Consensus        93 lv~~~D~P~~~~~~i~~l~~~~~~~  117 (245)
T 1h7e_A           93 INLQGDEPMIRPRDVETLLQGMRDD  117 (245)
T ss_dssp             EECCTTCTTCCHHHHHHHHHHHHHC
T ss_pred             EEEcCCcCcCCHHHHHHHHHHHHhC
Confidence            99999996 5788999999887554

>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A

Probab=95.05  E-value=0.038  Score=40.92  Aligned_cols=95  Identities=11%  Similarity=0.026  Sum_probs=60.0

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-CCcchHHHHHhhhhhc--CCCE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-KREGLIRARMFGAKYA--TGKV  105 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~G~~~a~n~g~~~a--~gd~  105 (214)
                      ..+..+++.+.+.. .   .+|+||-+...      +.+.++...   .+++++..+ ...|...+...|++..  ..++
T Consensus        32 pll~~~l~~l~~~~-~---~~i~vv~~~~~------~~~~~~~~~---~~~~~~~~~~~~~g~~~~i~~al~~~~~~~~~   98 (197)
T 2wee_A           32 TVLGATLDVARQAG-F---DQLILTLGGAA------SAVRAAMAL---DGTDVVVVEDVERGCAASLRVALARVHPRATG   98 (197)
T ss_dssp             EHHHHHHHHHHHTT-C---SEEEEEECTTH------HHHHHHSCC---TTSEEEECC----CCHHHHHHHHTTSCTTEEE
T ss_pred             cHHHHHHHHHHhcC-C---CcEEEEeCCCH------HHHHHHhcc---CCCEEEECCCcccCHHHHHHHHHHHhcccCCe
Confidence            56677777776543 2   37777754321      233443332   256666543 3457888888898887  4689


Q ss_pred             EEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEee
Q psy1766         106 LVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVPI  138 (214)
Q Consensus       106 i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~~  138 (214)
                      ++++++|.. +++..+..+++. ..+.. +++|.
T Consensus        99 vlv~~~D~P~~~~~~i~~l~~~-~~~~~-i~~~~  130 (197)
T 2wee_A           99 IVLMLGDQPQVAPATLRRIIDV-GPATE-IMVCR  130 (197)
T ss_dssp             EEEEETTCTTCCHHHHHHHHHH-GGGSS-EEEEE
T ss_pred             EEEEeCCcCCCCHHHHHHHHhh-cCCCC-EEEEe
Confidence            999999995 588999999887 44333 44554

>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*

Probab=94.96  E-value=0.2  Score=42.97  Aligned_cols=103  Identities=11%  Similarity=0.117  Sum_probs=68.5

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK   99 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~   99 (214)
                      ++|..|.  ..|...|+.+.+...    .+|+||-..-.  +...+.+.++...+ +..++++..++..|.+.|...++.
T Consensus        34 l~pv~gk--p~i~~~l~~~~~~g~----~~i~vv~~~~~--~~i~~~~~~~~~~~-~~~i~~~~q~~~lGTa~Av~~a~~  104 (501)
T 3st8_A           34 LHTLAGR--SMLSHVLHAIAKLAP----QRLIVVLGHDH--QRIAPLVGELADTL-GRTIDVALQDRPLGTGHAVLCGLS  104 (501)
T ss_dssp             GCEETTE--EHHHHHHHHHHHHCC----SEEEEEECTTH--HHHHHHHHHHHHHH-TSCCEEEECSSCCCHHHHHHHHHT
T ss_pred             HeEECCh--hHHHHHHHHHHhCCC----CEEEEEeCCCH--HHHHHHHHHHHHhc-CCcEEEEEcCCCCCcHHHHHHHHH
Confidence            4455554  356667777665543    37877765443  44555555544444 568899988889999999999988


Q ss_pred             hcCC---CEEEEEcCCC-ccCcCchHHHHHHHhcCC
Q psy1766         100 YATG---KVLVFLDSHI-EVNTHWLEPLLVPIAERT  131 (214)
Q Consensus       100 ~a~g---d~i~~lD~D~-~~~~~~l~~l~~~~~~~~  131 (214)
                      ....   +.++++.+|+ .+..+.+..+++......
T Consensus       105 ~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~  140 (501)
T 3st8_A          105 ALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAVS  140 (501)
T ss_dssp             TSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHTT
T ss_pred             HhccccccceeeecCcceeecHHHHHHHHHHHhhcc
Confidence            7643   3566666665 457788999888775443

>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}

Probab=94.91  E-value=0.33  Score=36.80  Aligned_cols=86  Identities=14%  Similarity=0.171  Sum_probs=55.5

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc--CCCcchHHHHHhhhhhcCCCEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT--SKREGLIRARMFGAKYATGKVL  106 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~--~~~~G~~~a~n~g~~~a~gd~i  106 (214)
                      ..|..+++.+.+.  ..   +|+|+-+.        +.+.++..++    +.++..  ....|.+.+. .|++....+++
T Consensus        28 pli~~~l~~~~~~--~~---~i~v~~~~--------~~i~~~~~~~----~~~~~~~~~~~~g~~~~~-~~~~~~~~~~v   89 (234)
T 2y6p_A           28 PLIRWVVEGLVKT--GE---RVILATDS--------ERVKEVVEDL----CEVFLTPSDLPSGSDRVL-YVVRDLDVDLI   89 (234)
T ss_dssp             EHHHHHHHHHHTT--TS---CEEEEESC--------HHHHHHHTTT----SEEEECCTTCCSHHHHHH-HHHTTCCCSEE
T ss_pred             EHHHHHHHHHHHh--CC---EEEEECCh--------HHHHHHHHhc----eEEEECCcccccchHHHH-HHHHhCCCCEE
Confidence            5677788887655  22   77777532        1334443332    344433  2245666666 46676678999


Q ss_pred             EEEcCCC-ccCcCchHHHHHHHhcCCC
Q psy1766         107 VFLDSHI-EVNTHWLEPLLVPIAERTN  132 (214)
Q Consensus       107 ~~lD~D~-~~~~~~l~~l~~~~~~~~~  132 (214)
                      +++++|. .+++..+..+++.+.+..+
T Consensus        90 lv~~~D~P~~~~~~i~~l~~~~~~~~~  116 (234)
T 2y6p_A           90 INYQGDEPFVYEEDIKLIFRELEKGER  116 (234)
T ss_dssp             EECCTTCCCCCHHHHHHHHHHHHHTCS
T ss_pred             EEecCCcCcCCHHHHHHHHHHHHhCCC
Confidence            9999999 6677899999988765444

>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A

Probab=94.80  E-value=0.23  Score=37.90  Aligned_cols=98  Identities=15%  Similarity=0.189  Sum_probs=61.0

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcC-CCEEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYAT-GKVLV  107 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~-gd~i~  107 (214)
                      ..|..+++.+.+....   .+|+||-+...  +...+ +.    .+....++++..  ..|...+...|++... .++++
T Consensus        36 pll~~~i~~l~~~~~~---~~ivvv~~~~~--~~~~~-~~----~~~~~~v~~~~~--~~g~~~~i~~al~~~~~~~~~l  103 (236)
T 1i52_A           36 TILEHSVHALLAHPRV---KRVVIAISPGD--SRFAQ-LP----LANHPQITVVDG--GDERADSVLAGLKAAGDAQWVL  103 (236)
T ss_dssp             EHHHHHHHHHHTSTTE---EEEEEEECTTC--CSGGG-SG----GGGCTTEEEEEC--CSSHHHHHHHHHHTSTTCSEEE
T ss_pred             EHHHHHHHHHHhCCCC---CeEEEEeCccH--HHHHH-HH----hcCCCCEEEECC--CCCHHHHHHHHHHhcCCCCEEE
Confidence            4555666666543322   37777766443  33333 22    221135666552  3577778888888874 79999


Q ss_pred             EEcCCCc-cCcCchHHHHHHHhcCC-C-EEEEee
Q psy1766         108 FLDSHIE-VNTHWLEPLLVPIAERT-N-TVTVPI  138 (214)
Q Consensus       108 ~lD~D~~-~~~~~l~~l~~~~~~~~-~-~vv~~~  138 (214)
                      ++++|.. ++++.+..+++.+.+.. . ++++|.
T Consensus       104 v~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~  137 (236)
T 1i52_A          104 VHDAARPCLHQDDLARLLALSETSRTGGILAAPV  137 (236)
T ss_dssp             ECCTTCTTCCHHHHHHHHGGGGTCSSCEEEEEEC
T ss_pred             EEcCccccCCHHHHHHHHHHHHhcCCeEEEEEec
Confidence            9999986 58889999998876553 2 334554

>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}

Probab=94.55  E-value=0.06  Score=39.85  Aligned_cols=95  Identities=12%  Similarity=0.032  Sum_probs=60.6

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-CCcchHHHHHhhhhhc--CCCE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-KREGLIRARMFGAKYA--TGKV  105 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~G~~~a~n~g~~~a--~gd~  105 (214)
                      ..+..+++.+.... .   .+|+||-+...      +.+.++...   .++.++..+ ...|...+...|++..  ..++
T Consensus        32 pli~~~l~~l~~~~-~---~~i~vv~~~~~------~~~~~~~~~---~~~~~~~~~~~~~g~~~~i~~al~~~~~~~~~   98 (199)
T 2waw_A           32 TLLGATLAMARRCP-F---DQLIVTLGGAA------DEVLEKVEL---DGLDIVLVDDAGLGCSSSLKSALTWVDPTAEG   98 (199)
T ss_dssp             EHHHHHHHHHHTSS-C---SEEEEEECTTH------HHHHHHSCC---TTSEEEECCCCCTTCCCHHHHHHHTSCTTCSE
T ss_pred             CHHHHHHHHHHhCC-C---CcEEEEeCCCH------HHHHHHhcc---CCCEEEECCCcccCHHHHHHHHHHhhhccCCe
Confidence            56667777776543 2   37877765321      233443332   245565533 3457777888888877  5699


Q ss_pred             EEEEcCCCcc-CcCchHHHHHHHhcCCCEEEEee
Q psy1766         106 LVFLDSHIEV-NTHWLEPLLVPIAERTNTVTVPI  138 (214)
Q Consensus       106 i~~lD~D~~~-~~~~l~~l~~~~~~~~~~vv~~~  138 (214)
                      ++++++|..+ ++..+..+++. ..+. .+++|.
T Consensus        99 vlv~~~D~P~~~~~~i~~l~~~-~~~~-~~~~~~  130 (199)
T 2waw_A           99 IVLMLGDQPGITASAVASLIAG-GRGA-TIAVCE  130 (199)
T ss_dssp             EEEEETTCTTCCHHHHHHHHHH-HTTC-SEEEEE
T ss_pred             EEEEeCCcccCCHHHHHHHHhh-cCCC-CEEEEe
Confidence            9999999974 78889999887 4443 344444

>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*

Probab=94.49  E-value=0.28  Score=37.14  Aligned_cols=92  Identities=16%  Similarity=0.082  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcC--CCEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYAT--GKVL  106 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~--gd~i  106 (214)
                      ..|..+++.+.+....   .+|+||-+..     ..++.+.+...+ ...+.++.  ...|...+...|++...  .+++
T Consensus        33 pli~~~l~~l~~~~~~---~~ivvv~~~~-----~~~~~~~~~~~~-~~~v~~~~--~~~~~~~sv~~al~~~~~~~~~v  101 (228)
T 2yc3_A           33 PIALYSFFTFSRMPEV---KEIVVVCDPF-----FRDIFEEYEESI-DVDLSFAI--PGKERQDSVYSGLQEIDVNSELV  101 (228)
T ss_dssp             EHHHHHHHHHHHCTTE---EEEEEECCGG-----GHHHHHTTTTTS-SSEEEEEC--CCSSHHHHHHHHHTTSCTTCSEE
T ss_pred             EHHHHHHHHHHcCCCC---CeEEEEEChH-----HHHHHHHHHHhC-CCcEEEEC--CCCCHHHHHHHHHHhhccCCCEE
Confidence            4555677776544222   3777774432     122333333222 22455554  23577788888887764  4899


Q ss_pred             EEEcCCC-ccCcCchHHHHHHHhcCC
Q psy1766         107 VFLDSHI-EVNTHWLEPLLVPIAERT  131 (214)
Q Consensus       107 ~~lD~D~-~~~~~~l~~l~~~~~~~~  131 (214)
                      +++|+|. .+++..+..+++.+.+..
T Consensus       102 l~~d~d~P~~~~~~i~~l~~~~~~~~  127 (228)
T 2yc3_A          102 CIHDSARPLVNTEDVEKVLKDGSAVG  127 (228)
T ss_dssp             EEEETTCTTCCHHHHHHHHHHHHHHS
T ss_pred             EEecCCCccCCHHHHHHHHHHHHhcC
Confidence            9999997 568889999998875433

>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*

Probab=94.39  E-value=0.86  Score=35.54  Aligned_cols=91  Identities=11%  Similarity=0.181  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHh---hcCCCcEEEEEcCCCcchHHHHHhhhhhcCCCE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVK---GLNNGRVHLYRTSKREGLIRARMFGAKYATGKV  105 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~---~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~  105 (214)
                      ..|..+|+++.+.. .   .+|+||-+...    ..++ .++..   .+ +..+.++..+...|.+.+...|++....+.
T Consensus        56 pli~~~l~~l~~~g-~---~~iivv~~~~~----~~~~-~~~~~~~~~~-~~~i~~~~~~~~~G~~~al~~a~~~~~~~~  125 (269)
T 4ecm_A           56 PMIYHAVYKLKQCD-I---TDIMIITGKEH----MGDV-VSFLGSGQEF-GVSFTYRVQDKAGGIAQALGLCEDFVGNDR  125 (269)
T ss_dssp             EHHHHHHHHHHHTT-C---CEEEEEECTTT----HHHH-HHHHTTSGGG-TCEEEEEECSSCCCHHHHHHTTHHHHTTSE
T ss_pred             EHHHHHHHHHHHCC-C---CEEEEECChhh----HHHH-HHHHhhcccc-CceEEEeeCCccCcHHHHHHHHHHhcCCCc
Confidence            45667777776653 2   37877765422    2223 33332   12 235666666667899999999988877789


Q ss_pred             EEEEcCCCccCcCchHHHHHHHhcC
Q psy1766         106 LVFLDSHIEVNTHWLEPLLVPIAER  130 (214)
Q Consensus       106 i~~lD~D~~~~~~~l~~l~~~~~~~  130 (214)
                      ++++.+|..+. ..+..+++.+.+.
T Consensus       126 ~lv~~~D~~~~-~~l~~l~~~~~~~  149 (269)
T 4ecm_A          126 MVVILGDNIFS-DDIRPYVEEFTNQ  149 (269)
T ss_dssp             EEEEETTEEES-SCSHHHHHHHHTS
T ss_pred             EEEEeCCccCc-cCHHHHHHHHHhc
Confidence            99999999776 6678888877543

>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A

Probab=94.19  E-value=0.52  Score=35.59  Aligned_cols=91  Identities=9%  Similarity=-0.028  Sum_probs=58.7

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhc-------
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA-------  101 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a-------  101 (214)
                      ..|..+++.+.+.....   +|+||-+...  +...+ +.++    ....+.++  ....|.+.+.-.|++..       
T Consensus        35 pli~~~l~~l~~~~~~~---~ivvv~~~~~--~~~~~-~~~~----~~~~i~~~--~~~~~~~~si~~~l~~~~~~~~~~  102 (231)
T 1vgw_A           35 TVLEHVLGIFERHEAVD---LTVVVVSPED--TFADK-VQTA----FPQVRVWK--NGGQTRAETVRNGVAKLLETGLAA  102 (231)
T ss_dssp             EHHHHHHHHHHTCTTCC---EEEEECCTTC--STHHH-HHHH----CTTSEEEC--CCCSSHHHHHHHHHHHHHHHSSSC
T ss_pred             EHHHHHHHHHHcCCCCC---eEEEEECccH--HHHHH-HHhc----CCCceEEE--cCCCcHHHHHHHHHHHHhhhccCC
Confidence            56777787776543233   7877765433  33333 3322    11356554  34567778888887765       


Q ss_pred             CCCEEEEEcCCCc-cCcCchHHHHHHHhcCC
Q psy1766         102 TGKVLVFLDSHIE-VNTHWLEPLLVPIAERT  131 (214)
Q Consensus       102 ~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~  131 (214)
                      ..+.++++++|.. ++++.+..+++.+.++.
T Consensus       103 ~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~  133 (231)
T 1vgw_A          103 ETDNILVHDAARCCLPSEALARLIEQAGNAA  133 (231)
T ss_dssp             TTSEEEECCTTCTTCCHHHHHHHHHHHTTCT
T ss_pred             CCCEEEEEcCCcccCCHHHHHHHHHHHhhcC
Confidence            4689999999985 57888999998876543

>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A

Probab=94.16  E-value=0.63  Score=36.23  Aligned_cols=88  Identities=10%  Similarity=0.115  Sum_probs=53.9

Q ss_pred             hHHHHHH-HHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhc---CCC
Q psy1766          29 ATLYRSV-QTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA---TGK  104 (214)
Q Consensus        29 ~~l~~~l-~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a---~gd  104 (214)
                      ..|..++ +.+.+.. .   .+|+|+-+.    +    .+.++..++ +..+.+.......|.. +...|++..   ..+
T Consensus        27 Pli~~~i~~~~~~~~-~---~~vvVvt~~----~----~i~~~~~~~-g~~v~~~~~~~~~Gt~-~i~~a~~~~~~~~~d   92 (253)
T 4fcu_A           27 PMILRVVDQAKKVEG-F---DDLCVATDD----E----RIAEICRAE-GVDVVLTSADHPSGTD-RLSEVARIKGWDADD   92 (253)
T ss_dssp             EHHHHHHHHHHTCTT-C---CEEEEEESC----H----HHHHHHHTT-TCCEEECCTTCCCHHH-HHHHHHHHHTCCTTC
T ss_pred             EhHHHHHHHHHHhcC-C---CEEEEECCH----H----HHHHHHHHc-CCeEEEeCCCCCChHH-HHHHHHHhcCcCCCC
Confidence            5677788 7765432 2   388888642    2    334444443 2233332223334543 444555554   458


Q ss_pred             EEEEEcCCCc-cCcCchHHHHHHHhcC
Q psy1766         105 VLVFLDSHIE-VNTHWLEPLLVPIAER  130 (214)
Q Consensus       105 ~i~~lD~D~~-~~~~~l~~l~~~~~~~  130 (214)
                      +++++++|.. ++++.+..+++.+.++
T Consensus        93 ~vlv~~gD~Pli~~~~i~~li~~~~~~  119 (253)
T 4fcu_A           93 IIVNVQGDEPLLPAQLVQQVAKLLVDK  119 (253)
T ss_dssp             EEEECCTTCTTCCHHHHHHHHHHHHHC
T ss_pred             EEEEEeCCcccCCHHHHHHHHHHHHhC
Confidence            9999999995 5889999999998654

>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*

Probab=93.74  E-value=0.17  Score=42.65  Aligned_cols=88  Identities=11%  Similarity=0.113  Sum_probs=59.9

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcC-CCEEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYAT-GKVLV  107 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~-gd~i~  107 (214)
                      ..|..+|+.+.+.. .   .+|+|+-....      +.++++...   .+++++..+...|.+.+...|++... .++++
T Consensus        37 pli~~~l~~l~~~~-~---~~i~vv~~~~~------~~i~~~~~~---~~~~~v~~~~~~g~~~~i~~~~~~~~~~~~~l  103 (459)
T 4fce_A           37 PMVQHVIDAAMKLG-A---QHVHLVYGHGG------ELLKKTLAD---PSLNWVLQAEQLGTGHAMQQAAPHFADDEDIL  103 (459)
T ss_dssp             EHHHHHHHHHHHHT-C---SCEEEEESSCH------HHHHHHC--------CEEECSSCCCHHHHHHHHGGGSCTTSEEE
T ss_pred             eHHHHHHHHHHhCC-C---CcEEEEeCCCH------HHHHHHhcc---CCcEEEeCCCCCCcHHHHHHHHHhcCCCCcEE
Confidence            46677777776654 2   27777765322      233443332   35667766777888999999998886 48999


Q ss_pred             EEcCCCc-cCcCchHHHHHHHhc
Q psy1766         108 FLDSHIE-VNTHWLEPLLVPIAE  129 (214)
Q Consensus       108 ~lD~D~~-~~~~~l~~l~~~~~~  129 (214)
                      ++++|.. +.+..+..+++.+.+
T Consensus       104 v~~~D~P~i~~~~i~~l~~~~~~  126 (459)
T 4fce_A          104 MLYGDVPLISVDTLQRLLAAKPE  126 (459)
T ss_dssp             EEETTCTTCCHHHHHHHHHHCCT
T ss_pred             EEeCCcccCCHHHHHHHHHHHhh
Confidence            9999984 688889999988755

>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}

Probab=93.69  E-value=0.21  Score=37.75  Aligned_cols=94  Identities=13%  Similarity=0.083  Sum_probs=62.1

Q ss_pred             CCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc-CCCcchHHHHHhhhhhcCC
Q psy1766          25 NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT-SKREGLIRARMFGAKYATG  103 (214)
Q Consensus        25 n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~-~~~~G~~~a~n~g~~~a~g  103 (214)
                      +.. ..+..+++.+...       +|+||-+. .      +.++.+...+   ++.++.. ....|...+...|++.+ .
T Consensus        24 ~G~-pli~~~~~~l~~~-------~vvvv~~~-~------~~~~~~~~~~---~~~~v~d~~~~~G~~~si~~gl~~~-~   84 (208)
T 3ngw_A           24 CGK-KLIEWVLEKYSPF-------QTVFVCRD-E------KQAEKLSSRY---EAEFIWDLHKGVGSIAGIHAALRHF-G   84 (208)
T ss_dssp             TTE-EHHHHHHHHHTTS-------EEEEECSS-H------HHHHHHHTTS---CSCEECCTTCCCSHHHHHHHHHHHH-S
T ss_pred             CCe-eHHHHHHHHhcCC-------CEEEEECC-H------HHHHHHHHhc---CCeEEecCCCCCChHHHHHHHHHHc-C
Confidence            455 6777888877533       67777532 1      2344444433   4555543 23457888999999988 8


Q ss_pred             CEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEee
Q psy1766         104 KVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVPI  138 (214)
Q Consensus       104 d~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~~  138 (214)
                      +++ ++.+|.. ++++.+..+++.+.+....+++|.
T Consensus        85 ~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~~  119 (208)
T 3ngw_A           85 SCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALIPK  119 (208)
T ss_dssp             SEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEEEc
Confidence            999 9999986 588999999998865233344444

>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*

Probab=93.22  E-value=0.15  Score=40.23  Aligned_cols=53  Identities=13%  Similarity=0.086  Sum_probs=42.9

Q ss_pred             CcEEEEEcCCCcchHHHHHhhhhhcCCCEEEEEcCCCccCcC----chHHHHHHHhc
Q psy1766          77 GRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTH----WLEPLLVPIAE  129 (214)
Q Consensus        77 ~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~----~l~~l~~~~~~  129 (214)
                      ..+.++..+...|.+.+...|+.....+.++++.+|..+.++    .+..+++...+
T Consensus        95 ~~i~~~~~~~~~Gt~~al~~a~~~l~~~~~lv~~~D~~~~~~~~~~~l~~l~~~~~~  151 (281)
T 3juk_A           95 CCFSYVRQKQMKGLGHAILTGEALIGNEPFAVILADDLCISHDHPSVLKQMTSLYQK  151 (281)
T ss_dssp             CEEEEEECSSCCCHHHHHHHTHHHHCSSCEEEECTTEEEECTTSCCHHHHHHHHHHH
T ss_pred             ccEEEEecCCCCCcHHHHHHHHHHcCCCCEEEEeCCeeccCccchHHHHHHHHHHHH
Confidence            456677767778999999999888777888999999987777    79999988754

>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*

Probab=93.21  E-value=1.3  Score=33.93  Aligned_cols=99  Identities=9%  Similarity=0.126  Sum_probs=62.3

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcC----CC
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYAT----GK  104 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~----gd  104 (214)
                      ..|..+++.+.+....+   +|+||-+...     .+.++++...    .+.++...  .+...+.-.|++...    .+
T Consensus        36 pll~~~l~~~~~~~~~~---~ivVv~~~~~-----~~~~~~~~~~----~v~~v~gg--~~r~~sv~~gl~~~~~~~~~d  101 (231)
T 3q80_A           36 TLIERAVDGLLDSGVVD---TVVVAVPADR-----TDEARQILGH----RAMIVAGG--SNRTDTVNLALTVLSGTAEPE  101 (231)
T ss_dssp             EHHHHHHHHHHHTSCCC---EEEEEECGGG-----HHHHHHHHGG----GCEEEECC--SSHHHHHHHHHGGGC---CCS
T ss_pred             EHHHHHHHHHHhCCCCC---eEEEECChHH-----HHHHHHHhcC----CeEEEcCC--CchHHHHHHHHHHhhhcCCCC
Confidence            67788888876543333   8888765332     2334444332    45666522  234566667777764    48


Q ss_pred             EEEEEcCCCc-cCcCchHHHHHHHhcCCC--EEEEeeeee
Q psy1766         105 VLVFLDSHIE-VNTHWLEPLLVPIAERTN--TVTVPIIDI  141 (214)
Q Consensus       105 ~i~~lD~D~~-~~~~~l~~l~~~~~~~~~--~vv~~~~~~  141 (214)
                      +++++|+|.. ++++.+..+++.+.++.+  +.++|..+.
T Consensus       102 ~Vlv~~~d~Pli~~~~i~~li~~~~~~~~~~i~~~p~~dt  141 (231)
T 3q80_A          102 FVLVHDAARALTPPALVARVVEALRDGYAAVVPVLPLSDT  141 (231)
T ss_dssp             EEEECCTTCTTCCHHHHHHHHHHHHTTCSEEEEEECCSSC
T ss_pred             EEEEEcCCcCCCCHHHHHHHHHHHhhcCCeEEEEEeccCC
Confidence            9999999987 488999999998876322  334454443

>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*

Probab=93.16  E-value=0.86  Score=37.67  Aligned_cols=86  Identities=8%  Similarity=0.075  Sum_probs=57.3

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcCCCEEEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVF  108 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~  108 (214)
                      ..+..+++.+.+.....   +|+||-+ ..      +.++++.     ..+.++.  ...|...+...|++....+++++
T Consensus        32 PLi~~~l~~l~~~~~~~---~IvVvt~-~~------~~i~~~~-----~~v~~v~--~g~g~~~sv~~aL~~l~~d~vlv   94 (371)
T 1w55_A           32 PLWLYATKNLSSFYPFK---KIVVTSS-NI------TYMKKFT-----KNYEFIE--GGDTRAESLKKALELIDSEFVMV   94 (371)
T ss_dssp             EHHHHHHHHHHTTSCCS---CEEEEES-CH------HHHHTTC-----SSSEEEE--CCSSHHHHHHHHHTTCCSSEEEE
T ss_pred             EHHHHHHHHHHccCCCC---eEEEEcC-CH------HHHHHHh-----CCCEEEe--CCCChHHHHHHHHHhcCCCeEEE
Confidence            56777777776533333   7888766 22      1222221     1255553  24567778888888877899999


Q ss_pred             EcCCCc-cCcCchHHHHHHHhcCC
Q psy1766         109 LDSHIE-VNTHWLEPLLVPIAERT  131 (214)
Q Consensus       109 lD~D~~-~~~~~l~~l~~~~~~~~  131 (214)
                      +++|.. ++++.+..+++.+.+..
T Consensus        95 ~~~D~Pli~~~~i~~li~~~~~~~  118 (371)
T 1w55_A           95 SDVARVLVSKNLFDRLIENLDKAD  118 (371)
T ss_dssp             EETTCTTCCHHHHHHHHTTGGGCS
T ss_pred             EeCCcccCCHHHHHHHHHHHHhcC
Confidence            999985 58889999998876553

>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0

Probab=93.09  E-value=0.32  Score=37.51  Aligned_cols=103  Identities=12%  Similarity=0.216  Sum_probs=62.5

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcC------
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYAT------  102 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~------  102 (214)
                      ..|..+|+.+.+.....   +|+||-+.... +...+.++.+..   +..+.++..  ..+...+...|++...      
T Consensus        33 pll~~~l~~~~~~~~~~---~ivvv~~~~~~-~~~~~~~~~~~~---~~~~~~~~~--~~~~~~sv~~al~~l~~~~~~~  103 (246)
T 3f1c_A           33 PIIVHTVEKFILNTRFD---KILISSPKEWM-NHAEDNIKKYIS---DDRIVVIEG--GEDRNETIMNGIRFVEKTYGLT  103 (246)
T ss_dssp             EHHHHHHHHHHTCTTCS---EEEEEECGGGH-HHHHHHHHHHCC---CTTEEEEEC--CSSHHHHHHHHHHHHHHHTCCC
T ss_pred             eHHHHHHHHHHcCCCCC---EEEEEeCHHHH-HHHHHHHHHhCC---CCCEEEECC--CCchHHHHHHHHHHHhhhhcCC
Confidence            67778888876554333   78777654320 112233333211   235666653  2355566666776542      


Q ss_pred             -CCEEEEEcCCCc-cCcCchHHHHHHHhcCC-CEEEEeeee
Q psy1766         103 -GKVLVFLDSHIE-VNTHWLEPLLVPIAERT-NTVTVPIID  140 (214)
Q Consensus       103 -gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~-~~vv~~~~~  140 (214)
                       .++++++|+|.. +++..+..+++.+.+.. .+.+.|..+
T Consensus       104 ~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~i~~~~~~d  144 (246)
T 3f1c_A          104 DDDIIVTHDAVRPFLTHRIIEENIDAALETGAVDTVIEALD  144 (246)
T ss_dssp             TTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEEEEEEECSS
T ss_pred             CCCEEEEecCcccCCCHHHHHHHHHHHHhcCCEEEEEeccc
Confidence             589999999985 68899999999886643 334445433

>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...

Probab=92.87  E-value=1.1  Score=35.46  Aligned_cols=96  Identities=14%  Similarity=0.231  Sum_probs=59.3

Q ss_pred             EEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhh---cCCCcEEEEEcCCCcchHHHHHhh
Q psy1766          21 ICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKG---LNNGRVHLYRTSKREGLIRARMFG   97 (214)
Q Consensus        21 Ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~---~~~~~v~~i~~~~~~G~~~a~n~g   97 (214)
                      +|.++.  ..+...|+.+.... -   .+|+||-.+..     .+.++++...   + +..+.++..+...|.+.+...|
T Consensus        28 lpi~gk--pli~~~l~~l~~~g-i---~~I~vv~~~~~-----~~~i~~~l~~g~~~-g~~i~~~~~~~~~G~~~al~~a   95 (293)
T 1fxo_A           28 LPVYDK--PMIYYPLSTLMLAG-I---REILIISTPQD-----TPRFQQLLGDGSNW-GLDLQYAVQPSPDGLAQAFLIG   95 (293)
T ss_dssp             SEETTE--ETTHHHHHHHHHTT-C---CEEEEEECTTT-----HHHHHHHHTTSGGG-TCEEEEEECSSCCCGGGHHHHT
T ss_pred             CeECCE--eHHHHHHHHHHHCC-C---CEEEEEecccc-----HHHHHHHHhccccc-CceEEEeeCCCCCCHHHHHHHH
Confidence            455554  46666777765543 2   38887764332     2234444432   2 2356667666677888888888


Q ss_pred             hhhcCCCEEEEEcCCCccCcCchHHHHHHHh
Q psy1766          98 AKYATGKVLVFLDSHIEVNTHWLEPLLVPIA  128 (214)
Q Consensus        98 ~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~  128 (214)
                      ++....+-++++.+|..+...-+..+++.+.
T Consensus        96 ~~~i~~~~~~lv~gD~~~~~~~l~~~l~~~~  126 (293)
T 1fxo_A           96 ESFIGNDLSALVLGDNLYYGHDFHELLGSAS  126 (293)
T ss_dssp             HHHHTTSEEEEEETTEEEECTTHHHHHHHHH
T ss_pred             HHHhCCCCEEEEECChhccCccHHHHHHHHH
Confidence            8776555555555998765467888888774

>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*

Probab=92.85  E-value=2  Score=33.11  Aligned_cols=85  Identities=15%  Similarity=0.185  Sum_probs=51.7

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC--CCcchHHHHHhhhhh---cCC
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS--KREGLIRARMFGAKY---ATG  103 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~--~~~G~~~a~n~g~~~---a~g  103 (214)
                      ..|..+++.+.+... .   +|+|+-+.    +.    +.++..++   ++.++..+  ...|.+. ...+++.   ...
T Consensus        28 pli~~~l~~l~~~~~-~---~ivvv~~~----~~----i~~~~~~~---~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~   91 (262)
T 1vic_A           28 PMIQHVFEKALQSGA-S---RVIIATDN----EN----VADVAKSF---GAEVCMTSVNHNSGTER-LAEVVEKLAIPDN   91 (262)
T ss_dssp             EHHHHHHHHHHHTTC-S---EEEEEESC----HH----HHHHHHHT---TCEEEECCCSSCCHHHH-HHHHHHHTTCCTT
T ss_pred             EHHHHHHHHHHhCCC-c---eEEEECCc----HH----HHHHHHhc---CCEEEECCccccCChHH-HHHHHHHhccCCC
Confidence            577778888766543 3   88887642    22    33333333   45555542  2334432 2223322   356


Q ss_pred             CEEEEEcCCCc-cCcCchHHHHHHHhc
Q psy1766         104 KVLVFLDSHIE-VNTHWLEPLLVPIAE  129 (214)
Q Consensus       104 d~i~~lD~D~~-~~~~~l~~l~~~~~~  129 (214)
                      ++++++++|.. +++..+..+++.+.+
T Consensus        92 ~~vlv~~~D~P~i~~~~i~~l~~~~~~  118 (262)
T 1vic_A           92 EIIVNIQGDEPLIPPVIVRQVADNLAK  118 (262)
T ss_dssp             CEEEECCTTCTTCCHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCcCccCHHHHHHHHHHHHh
Confidence            89999999985 578889999988754

>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}

Probab=92.79  E-value=2.5  Score=33.59  Aligned_cols=87  Identities=14%  Similarity=0.026  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhh-cCC-CcEEEEEcCCCcchHHHHHhhhhhcC-CCE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKG-LNN-GRVHLYRTSKREGLIRARMFGAKYAT-GKV  105 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~-~~~-~~v~~i~~~~~~G~~~a~n~g~~~a~-gd~  105 (214)
                      ..|..+|+.+.+.  .   .+|+||-+..     ..+.+.+.... + + +.+.++..+...|.+.+...++.... .++
T Consensus        38 pli~~~l~~l~~~--~---~~i~vv~~~~-----~~~~i~~~~~~~~-~~~~~~~i~~~~~~gt~~al~~a~~~l~~~~~  106 (308)
T 2qh5_A           38 SLFELSFKRNASL--V---DETLIVCNEK-----HYFLALEEIKNEI-KNKSVGFLLESLSKNTANAIALSALMSDKEDL  106 (308)
T ss_dssp             CHHHHHHHHHHTT--C---SEEEEEEEGG-----GHHHHHHHTTTTC-SSCEEEEEEESSCCCHHHHHHHHHHTSCTTSE
T ss_pred             CHHHHHHHHHHcc--C---CCEEEEEChh-----HHHHHHHHHHHhh-CCCccEEEeCCCCCChHHHHHHHHHHhCCCCe
Confidence            5777788887665  2   2777765432     12234444333 3 2 25566666667888888888887765 457


Q ss_pred             EEEEcCCCcc-CcCchHHHHHH
Q psy1766         106 LVFLDSHIEV-NTHWLEPLLVP  126 (214)
Q Consensus       106 i~~lD~D~~~-~~~~l~~l~~~  126 (214)
                      ++++.+|..+ +++.+..+++.
T Consensus       107 ~lv~~~D~~~~~~~~~~~~~~~  128 (308)
T 2qh5_A          107 LIVTPSDHLIKDLQAYENAIKK  128 (308)
T ss_dssp             EEEEESSCBCCCHHHHHHHHHH
T ss_pred             EEEEcCCccccCHHHHHHHHHH
Confidence            9999999987 67778888875

>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*

Probab=92.77  E-value=0.81  Score=34.05  Aligned_cols=89  Identities=8%  Similarity=0.113  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-CC-cchHHHHHhhhhhcCCCEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-KR-EGLIRARMFGAKYATGKVL  106 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-~~-~G~~~a~n~g~~~a~gd~i  106 (214)
                      ..+..+++.+...  .   .+|+||-+..     ..    .+. +   .++.++... .. .|...+...|++....+++
T Consensus        34 pli~~~l~~l~~~--~---~~ivvv~~~~-----~~----~~~-~---~~~~~v~~~~~~~~G~~~si~~~l~~~~~~~v   95 (201)
T 1e5k_A           34 PLWQHVADALMTQ--L---SHVVVNANRH-----QE----IYQ-A---SGLKVIEDSLADYPGPLAGMLSVMQQEAGEWF   95 (201)
T ss_dssp             EHHHHHHHHHHHH--C---SCEEEECSSS-----HH----HHH-T---TSCCEECCCTTCCCSHHHHHHHHHHHCCSSEE
T ss_pred             eHHHHHHHHHHhh--C---CEEEEEcCCc-----HH----HHh-h---cCCeEEecCCCCCCCHHHHHHHHHHhCCCCcE
Confidence            4666677776532  2   3777774322     11    121 2   245556543 23 6889999999999888999


Q ss_pred             EEEcCCCc-cCcCchHHHHHHHhcCCCEEEEe
Q psy1766         107 VFLDSHIE-VNTHWLEPLLVPIAERTNTVTVP  137 (214)
Q Consensus       107 ~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~  137 (214)
                      +++++|.. ++++.+..+++. ..+.+ +++|
T Consensus        96 lv~~~D~P~i~~~~i~~l~~~-~~~~~-~~~~  125 (201)
T 1e5k_A           96 LFCPCDTPYIPPDLAARLNHQ-RKDAP-VVWV  125 (201)
T ss_dssp             EEEETTCTTCCTTHHHHHHHT-CTTCS-EEEE
T ss_pred             EEEeCCcCcCCHHHHHHHHhh-cCCCC-EEEE
Confidence            99999994 688999999887 43333 3444

>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}

Probab=92.64  E-value=0.094  Score=39.15  Aligned_cols=60  Identities=8%  Similarity=0.214  Sum_probs=43.3

Q ss_pred             cEEEEEcCC-CcchHHHHHhhhhhcCC-CEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEeee
Q psy1766          78 RVHLYRTSK-REGLIRARMFGAKYATG-KVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVPII  139 (214)
Q Consensus        78 ~v~~i~~~~-~~G~~~a~n~g~~~a~g-d~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~~~  139 (214)
                      ++ ++..+. ..|...+...|++.... ++++++++|.. ++++.+..+++.+ +....+++|..
T Consensus        61 ~~-~v~~~~~~~G~~~si~~al~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~~~  123 (197)
T 3d5n_A           61 QI-VIYNPFWNEGISTSLKLGLRFFKDYDAVLVALGDMPFVTKEDVNKIINTF-KPNCKAVIPTH  123 (197)
T ss_dssp             SC-EEECTTGGGCHHHHHHHHHHHTTTSSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSEEEEEE
T ss_pred             CE-EEECCCCCCCHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHh-cCCCcEEEEEe
Confidence            45 555332 35888888889988765 89999999995 6889999998877 44444555543

>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}

Probab=92.54  E-value=0.1  Score=38.67  Aligned_cols=90  Identities=9%  Similarity=0.127  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC-CCcEEEEEcCCCcchHHHHHhhhhhcCCCEEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN-NGRVHLYRTSKREGLIRARMFGAKYATGKVLV  107 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~-~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~  107 (214)
                      ..+..+++.+.+.. -.   +|+||-+...  +...+.+..   .+. ..++.++. ....|.+.+...|++.. .+.++
T Consensus        28 pli~~~l~~l~~~~-~~---~v~vv~~~~~--~~i~~~~~~---~~~~~~~~~~~~-~~~~g~~~si~~al~~~-~~~vl   96 (196)
T 3rsb_A           28 CLIDYVVSPLLKSK-VN---NIFIATSPNT--PKTKEYINS---AYKDYKNIVVID-TSGKGYIEDLNECIGYF-SEPFL   96 (196)
T ss_dssp             EHHHHHHHHHHSSS-CC---CEEEECCTTC--HHHHHHHHH---HTTTTTEEEE---------CCCCCTTTTTC-SSCEE
T ss_pred             EHHHHHHHHHHHCC-CC---EEEEEeCCCh--HHHHHHHHh---hccCCCCEEEEE-CCCCCcHHHHHHHHHhC-CCCEE
Confidence            67888888887654 23   7777765433  333333333   120 12566665 33556666667777777 89999


Q ss_pred             EEcCCCc-cCcCchHHHHHHHhc
Q psy1766         108 FLDSHIE-VNTHWLEPLLVPIAE  129 (214)
Q Consensus       108 ~lD~D~~-~~~~~l~~l~~~~~~  129 (214)
                      ++.+|.. +++..+..+++.+.+
T Consensus        97 v~~~D~P~i~~~~i~~l~~~~~~  119 (196)
T 3rsb_A           97 VVSSDLINLKSKIINSIVDYFYC  119 (196)
T ss_dssp             EEETTEESCCHHHHHHHHHHHHH
T ss_pred             EEeCCcccCCHHHHHHHHHHHHh
Confidence            9999986 589999999998864

>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}

Probab=92.09  E-value=0.73  Score=36.47  Aligned_cols=55  Identities=13%  Similarity=0.065  Sum_probs=44.1

Q ss_pred             CcEEEEEcCCCcchHHHHHhhhhhcCCCEEEEEcCCCccC--cCchHHHHHHHhcCC
Q psy1766          77 GRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVN--THWLEPLLVPIAERT  131 (214)
Q Consensus        77 ~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~--~~~l~~l~~~~~~~~  131 (214)
                      ..+.++..+...|.+.+...|+.....+.++++.+|..+.  +..+..+++...+..
T Consensus       106 ~~i~~~~~~~~~Gt~~al~~a~~~~~~~~~lv~~~D~~~~~~~~~l~~l~~~~~~~~  162 (297)
T 2ux8_A          106 GNIAYVRQQEPMGLGHAVWCARDIVGDEPFAVLLPDDFMFGQPGCLKQMVDAYNKVG  162 (297)
T ss_dssp             TSEEEEECCSCCCHHHHHHTTHHHHCSSCEEEECTTEEEESSSCHHHHHHHHHHHHC
T ss_pred             CceEEEeCCCCCChHHHHHHHHHHcCCCcEEEEeCCeecCCChHHHHHHHHHHHhcC
Confidence            3577777667789999999998877678899999999987  678999998775433

>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*

Probab=92.06  E-value=1.2  Score=33.57  Aligned_cols=100  Identities=9%  Similarity=0.019  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC---CCcEEEEEcCCCcchHHHHHhhhhhc----
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN---NGRVHLYRTSKREGLIRARMFGAKYA----  101 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~---~~~v~~i~~~~~~G~~~a~n~g~~~a----  101 (214)
                      ..|..+|+.+.+.....   +|+||-+...     .+.++++..++.   ...+.+..  ...|...+...|++..    
T Consensus        32 pli~~~l~~l~~~~~~~---~i~vv~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~l~~~~~~~  101 (236)
T 2vsh_A           32 PILIHTIEKFVLEPSIE---KIVVGVHGDW-----VSHAEDLVDKYLPLYKERIIITK--GGADRNTSIKNIIEAIDAYR  101 (236)
T ss_dssp             EHHHHHHHHHHTCTTCC---CEEEEECGGG-----HHHHHHHHHHHCGGGGGGEEEEE--CCSSHHHHHHHHHHHHHHHS
T ss_pred             cHHHHHHHHHHcCCCCC---eEEEEeCHHH-----HHHHHHHHHhccccccCceEEEC--CCCchHHHHHHHHHHHHhhc
Confidence            57777888776543233   7777655321     123444333320   01233333  2346667777777765    


Q ss_pred             ---CCCEEEEEcCCC-ccCcCchHHHHHHHhcCC-CEEEEee
Q psy1766         102 ---TGKVLVFLDSHI-EVNTHWLEPLLVPIAERT-NTVTVPI  138 (214)
Q Consensus       102 ---~gd~i~~lD~D~-~~~~~~l~~l~~~~~~~~-~~vv~~~  138 (214)
                         ..++++++++|. .+++..+..+++.+.+.. ..+++|.
T Consensus       102 ~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~  143 (236)
T 2vsh_A          102 PLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDAVDTVVEA  143 (236)
T ss_dssp             CCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSEEEEEEEC
T ss_pred             cCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCcEEEEEec
Confidence               348999999999 568889999999886544 2344444

>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6

Probab=91.80  E-value=2.5  Score=33.57  Aligned_cols=96  Identities=15%  Similarity=0.265  Sum_probs=58.7

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhh---cCCCcEEEEEcCCCcchHHHHHh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKG---LNNGRVHLYRTSKREGLIRARMF   96 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~---~~~~~v~~i~~~~~~G~~~a~n~   96 (214)
                      .+|.++.  ..|...|+.+.... .   .+|+||-....     .+.++++...   + +..+.++..+...|.+.+.-.
T Consensus        28 llpi~gk--pli~~~l~~l~~~g-i---~~Iivv~~~~~-----~~~i~~~l~~g~~~-g~~i~~~~~~~~~G~~~al~~   95 (295)
T 1lvw_A           28 LLPIYDK--PMIYYPLSVLMLAG-I---RDILIISTPRD-----LPLYRDLLGDGSQF-GVRFSYRVQEEPRGIADAFIV   95 (295)
T ss_dssp             GSEETTE--ETTHHHHHHHHHTT-C---CEEEEEECTTT-----HHHHHHHHTTSGGG-TSEEEEEECSSCCCGGGHHHH
T ss_pred             ecEECCe--eHHHHHHHHHHHCC-C---CeEEEEeccch-----HHHHHHHhhhcccc-CceEEEeeCCCCCChHHHHHH
Confidence            3556664  46666777766543 2   38887754322     2234444432   2 234666666666788888888


Q ss_pred             hhhhcC-CCEEEEEcCCCccCcCchHHHHHHHh
Q psy1766          97 GAKYAT-GKVLVFLDSHIEVNTHWLEPLLVPIA  128 (214)
Q Consensus        97 g~~~a~-gd~i~~lD~D~~~~~~~l~~l~~~~~  128 (214)
                      |++... .++++++ +|..+...-+..+++...
T Consensus        96 a~~~i~~~~~~lv~-gD~~~~~~~l~~~l~~~~  127 (295)
T 1lvw_A           96 GKDFIGDSKVALVL-GDNVFYGHRFSEILRRAA  127 (295)
T ss_dssp             THHHHTTSCEEEEE-TTCCEECTTHHHHHHHHH
T ss_pred             HHHHhCCCcEEEEE-CCccccCcCHHHHHHHHH
Confidence            887765 4555555 888764467888887774

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*

Probab=91.72  E-value=0.92  Score=36.34  Aligned_cols=104  Identities=14%  Similarity=0.136  Sum_probs=63.1

Q ss_pred             chHHHHHHHHH-HhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCC--------cc----hHHHH
Q psy1766          28 PATLYRSVQTL-LSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKR--------EG----LIRAR   94 (214)
Q Consensus        28 ~~~l~~~l~sl-~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~--------~G----~~~a~   94 (214)
                      +..+..++.|+ +..+..+  ..+.|+.++-+  ++..+.++++...+ +..++++..+..        .+    ....|
T Consensus        12 ~~~~~vli~Sl~l~~~~~~--~~f~il~~~ls--~~~~~~L~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~s~~~y~R   86 (311)
T 1g9r_A           12 AAYLCVAAKSVEAAHPDTE--IRFHVLDAGIS--EANRAAVAANLRGG-GGNIRFIDVNPEDFAGFPLNIRHISITTYAR   86 (311)
T ss_dssp             HHHHHHHHHHHHHTCTTSC--CEEEEEESSCC--HHHHHHHHHHSGGG-TTTEEEEECCGGGGTTSCCCCTTCCGGGGGG
T ss_pred             HHHHHHHHHHHHHHcCCCC--ceEEEEECCCC--HHHHHHHHHHHHHc-CCEEEEEEcCHHHHhcCccccccCCHHHHHH
Confidence            57788899999 7766444  58888888766  67777888876654 456777654311        11    11112


Q ss_pred             Hhhhhh-cCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEe
Q psy1766          95 MFGAKY-ATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP  137 (214)
Q Consensus        95 n~g~~~-a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~  137 (214)
                      -..... ..-+-|+++|+|..+..+ +.++.+.=..+...++++
T Consensus        87 l~l~~ll~~~~kvlyLD~D~iv~~d-i~eL~~~~l~~~~~aav~  129 (311)
T 1g9r_A           87 LKLGEYIADCDKVLYLDIDVLVRDS-LTPLWDTDLGDNWLGASI  129 (311)
T ss_dssp             GGHHHHCCSCSCEEEECSSEEECSC-CHHHHTCCCTTCSEEEEE
T ss_pred             HHHHHHhhhcCEEEEEcCCeEeccC-HHHHhccCCCCcEEEEEe
Confidence            122222 245889999999998766 555554312334455554

>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*

Probab=91.58  E-value=2.4  Score=31.57  Aligned_cols=89  Identities=7%  Similarity=0.033  Sum_probs=58.3

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhc-CCCEEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA-TGKVLV  107 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a-~gd~i~  107 (214)
                      ..|..+++.+.+.....   +|+||-+...     .+.++++..   ...+.++..  ..+.+.+...|++.. ..++++
T Consensus        31 pli~~~l~~l~~~~~~~---~i~vv~~~~~-----~~~~~~~~~---~~~v~~~~~--~~~~~~~i~~al~~~~~~~~vl   97 (223)
T 2xwl_A           31 PLLEHALSGLRASGVID---RIVIAVPPAL-----TDESKLVFG---GEDSVIVSG--GVDRTESVALALEAAGDAEFVL   97 (223)
T ss_dssp             EHHHHHHHHHHHHSCCS---EEEEEECGGG-----HHHHHHHTC---BTTEEEEEC--CSSHHHHHHHHHTTCTTCSEEE
T ss_pred             EHHHHHHHHHhcCCCCC---eEEEEEcccH-----HHHHHHHhc---cCCeEEEcC--CCCHHHHHHHHHHhcCCCCEEE
Confidence            57777787776544233   7777765322     223333321   135766653  245677788888877 678999


Q ss_pred             EEcCCCc-cCcCchHHHHHHH-hcC
Q psy1766         108 FLDSHIE-VNTHWLEPLLVPI-AER  130 (214)
Q Consensus       108 ~lD~D~~-~~~~~l~~l~~~~-~~~  130 (214)
                      ++++|.. +++..+..+++.+ .+.
T Consensus        98 v~~~D~P~~~~~~i~~l~~~~~~~~  122 (223)
T 2xwl_A           98 VHDAARALTPPALIARVVAALKEGH  122 (223)
T ss_dssp             ECCTTCTTCCHHHHHHHHHHHHHTC
T ss_pred             EEcCCcccCCHHHHHHHHHHHhhcC
Confidence            9999985 5888999999887 443

>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}

Probab=91.43  E-value=3.3  Score=30.59  Aligned_cols=94  Identities=14%  Similarity=0.045  Sum_probs=60.3

Q ss_pred             CCCCceEEEEEEeCCC--------------chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCC
Q psy1766          12 STLPSTSVIICFYNEH--------------PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNG   77 (214)
Q Consensus        12 ~~~p~vSVIIp~~n~~--------------~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~   77 (214)
                      +.|+++.+||++-...              ...+..+++.+...  .   .+|+||-+...  .      +.+     . 
T Consensus        10 ~~~~~~~~iILA~G~g~Rmg~~K~ll~i~g~pll~~~l~~l~~~--~---~~i~vv~~~~~--~------~~~-----~-   70 (201)
T 2e8b_A           10 SLSKVNTCYVLAGGKSKRFGEDKLLYEIKGKKVIERVYETAKSV--F---KEVYIVAKDRE--K------FSF-----L-   70 (201)
T ss_dssp             TSCSCCEEEEEEESSCCCCSTTHHHHHHHHHHHHHHHHHHHHTT--C---SEEEEEESCSG--G------GGG-----G-
T ss_pred             CcccCceEEEECCCCCccCCCCcccceECceEHHHHHHHHHHHh--C---CEEEEEeCcHH--H------hhc-----C-
Confidence            3455678888886543              12333445444333  2   38888765432  2      111     0 


Q ss_pred             cEEEEEcC-CCcchHHHHHhhhhhcCCCEEEEEcCCCcc-CcCchHH-HH
Q psy1766          78 RVHLYRTS-KREGLIRARMFGAKYATGKVLVFLDSHIEV-NTHWLEP-LL  124 (214)
Q Consensus        78 ~v~~i~~~-~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~-~~~~l~~-l~  124 (214)
                      +++++..+ ...|.+.+...|++....+.++++.+|..+ +++.+.. ++
T Consensus        71 ~~~~v~~~~~~~g~~~~i~~al~~~~~~~~lv~~~D~P~i~~~~i~~~l~  120 (201)
T 2e8b_A           71 NAPVVLDEFEESASIIGLYTALKHAKEENVFVLSGDLPLMKKETVLYVLE  120 (201)
T ss_dssp             TCCEEECCCSSCCHHHHHHHHHHHCSSSEEEEEETTCTTCCHHHHHHHHH
T ss_pred             CceEEecCCCCCCcHHHHHHHHHHcCCCCEEEEeCCcCcCCHHHHHHHHh
Confidence            34455533 457899999999998888999999999864 7888887 76

>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*

Probab=91.22  E-value=2.4  Score=35.68  Aligned_cols=89  Identities=12%  Similarity=0.104  Sum_probs=61.7

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcC--CCEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYAT--GKVL  106 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~--gd~i  106 (214)
                      ..|..+|+.+.+.. .   .+|+|+-+...      +.+.++..    ..+.++..+...|.+.+...|++...  .+++
T Consensus        40 pli~~~l~~l~~~g-~---~~iivv~~~~~------~~i~~~~~----~~i~~v~~~~~~G~~~sl~~a~~~~~~~~~~v  105 (468)
T 1hm9_A           40 SMLEHVFRSVGAIQ-P---EKTVTVVGHKA------ELVEEVLA----GQTEFVTQSEQLGTGHAVMMTEPILEGLSGHT  105 (468)
T ss_dssp             EHHHHHHHHHHTTC-C---SEEEEEECTTH------HHHHHSSS----SSSEEEECSSCCCHHHHHHTTHHHHTTCCSEE
T ss_pred             cHHHHHHHHHHhcC-C---CCEEEEECCCH------HHHHHHhC----CCcEEEeCCccCChHHHHHHHHHHhccCCCeE
Confidence            67788888876553 2   37777754321      22333221    15677776667799999988888765  6899


Q ss_pred             EEEcCCCc-cCcCchHHHHHHHhcCC
Q psy1766         107 VFLDSHIE-VNTHWLEPLLVPIAERT  131 (214)
Q Consensus       107 ~~lD~D~~-~~~~~l~~l~~~~~~~~  131 (214)
                      +++++|.. +.+..+..+++.+.+..
T Consensus       106 lv~~~D~P~i~~~~i~~l~~~~~~~~  131 (468)
T 1hm9_A          106 LVIAGDTPLITGESLKNLIDFHINHK  131 (468)
T ss_dssp             EEEETTCTTCCHHHHHHHHHHHHHTT
T ss_pred             EEEeCCccccCHHHHHHHHHHHHhcC
Confidence            99999996 57888999998875543

>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}

Probab=91.15  E-value=2.1  Score=34.09  Aligned_cols=93  Identities=15%  Similarity=0.064  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC---------------CCcchHHH
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS---------------KREGLIRA   93 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~---------------~~~G~~~a   93 (214)
                      ..|..+|+.+.+...    .+|+||-..... +...+.+......  ...+.++..+               ...|.+.|
T Consensus        34 pli~~~l~~~~~~~~----~~i~vv~~~~~~-~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~a  106 (303)
T 3pnn_A           34 TIMDYSVYDAIRAGF----GRLVFVIRHSFE-KEFREKILTKYEG--RIPVELVFQELDRLPEGFSCPEGREKPWGTNHA  106 (303)
T ss_dssp             CHHHHHHHHHHHHTC----CEEEEEECGGGH-HHHHHHTHHHHTT--TSCEEEEECCTTCCCTTCCCCTTCCSCCCHHHH
T ss_pred             eHHHHHHHHHHHCCC----CeEEEEcCchHH-HHHHHHHHHHhcc--CCcEEEEecccccccccccccccccccCCcHHH
Confidence            567777777765432    377777653310 1222222221111  2457777655               46899999


Q ss_pred             HHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhc
Q psy1766          94 RMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAE  129 (214)
Q Consensus        94 ~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~  129 (214)
                      ...+......++ +++.+|..+..+.+..+++...+
T Consensus       107 l~~a~~~i~~~~-lV~~gD~l~~~~~~~~l~~~~~~  141 (303)
T 3pnn_A          107 VLMGRDAIREPF-AVINADDFYGRNGFEVLARKLMT  141 (303)
T ss_dssp             HHTTTTTCCSCE-EEEESSCBCCHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCE-EEEECCeecCHHHHHHHHHHHHH
Confidence            999988885554 55679988888889999988754

>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*

Probab=90.92  E-value=1.3  Score=37.13  Aligned_cols=88  Identities=16%  Similarity=0.154  Sum_probs=61.0

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcC-CCEEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYAT-GKVLV  107 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~-gd~i~  107 (214)
                      ..|..+|+.+.+.. .   .+|+|+-+...      +.++++..++   .++++..+...|.+.+...|++... .++++
T Consensus        34 pli~~~l~~l~~~~-~---~~iivv~~~~~------~~i~~~~~~~---~~~~v~~~~~~g~~~~~~~~~~~~~~~~~vl  100 (456)
T 2v0h_A           34 PMVKHVIDTAHQLG-S---ENIHLIYGHGG------DLMRTHLANE---QVNWVLQTEQLGTAHAVQQAAPFFKDNENIV  100 (456)
T ss_dssp             EHHHHHHHHHHHTT-C---SCEEEEECTTH------HHHHHHTTTC---CCEEEECSCCCCHHHHHHHHGGGCCTTSEEE
T ss_pred             cHHHHHHHHHHhCC-C---CcEEEEeCCCH------HHHHHHhhcC---CcEEEeCCCCCCcHHHHHHHHHhcCCCCeEE
Confidence            56667787776653 2   27777654321      2344443332   5677776667788888888888875 78999


Q ss_pred             EEcCCCc-cCcCchHHHHHHHhc
Q psy1766         108 FLDSHIE-VNTHWLEPLLVPIAE  129 (214)
Q Consensus       108 ~lD~D~~-~~~~~l~~l~~~~~~  129 (214)
                      ++++|.. +.+..+..+++.+.+
T Consensus       101 v~~~D~P~i~~~~i~~l~~~~~~  123 (456)
T 2v0h_A          101 VLYGDAPLITKETLEKLIEAKPE  123 (456)
T ss_dssp             EEETTCTTCCHHHHHHHHHHCCT
T ss_pred             EEcCCcceeCHHHHHHHHHHHhc
Confidence            9999995 678889999887755

>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=90.26  E-value=1.1  Score=36.11  Aligned_cols=55  Identities=18%  Similarity=0.018  Sum_probs=42.2

Q ss_pred             cEEEEEcCCCcchHHHHHhhhhhcCC--CEEEEEcCCCccC-cCchHHHHHHHhcCCC
Q psy1766          78 RVHLYRTSKREGLIRARMFGAKYATG--KVLVFLDSHIEVN-THWLEPLLVPIAERTN  132 (214)
Q Consensus        78 ~v~~i~~~~~~G~~~a~n~g~~~a~g--d~i~~lD~D~~~~-~~~l~~l~~~~~~~~~  132 (214)
                      .+.++..+...|.+.+...|+.....  ++++++.+|..+. +..+..+++.+.+...
T Consensus       106 ~i~~~~~~~~~Gt~~al~~a~~~l~~~~d~~lv~~~D~~~~~~~~l~~l~~~~~~~~~  163 (323)
T 2pa4_A          106 KAVPVTQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDLVLPTGVMERMAQVRAEFGG  163 (323)
T ss_dssp             EEEEEECSSCCCHHHHHHTTGGGSCSSCCEEEEECTTEEEESSCHHHHHHHHHHTTCS
T ss_pred             ceEEEeCCccCCcHHHHHHHHHHhcCCCCeEEEEeCCcccCchHHHHHHHHHHHhcCC
Confidence            56667666678999999998887643  4588899999986 5889999988765443

>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}

Probab=90.21  E-value=1.7  Score=34.41  Aligned_cols=53  Identities=11%  Similarity=0.121  Sum_probs=41.8

Q ss_pred             cEEEEEcCCCcchHHHHHhhhhhcCCCEEEEEcCCCccC----cC---chHHHHHHHhcC
Q psy1766          78 RVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVN----TH---WLEPLLVPIAER  130 (214)
Q Consensus        78 ~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~----~~---~l~~l~~~~~~~  130 (214)
                      .+.++......|.+.+...|+.....+.++++.+|..+.    +.   .+..+++...+.
T Consensus       103 ~i~~~~~~~~~Gt~~al~~a~~~~~~~~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~  162 (302)
T 2e3d_A          103 TIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDET  162 (302)
T ss_dssp             EEEEEECSSCCCHHHHHHHTHHHHCSSCEEEECTTEEECTTSSCTTTSTHHHHHHHHHHH
T ss_pred             ceEEeeCCccCCHHHHHHHHHHHcCCCcEEEEcCCccccCccccchHHHHHHHHHHHHhc
Confidence            566676667789999999888877667889999999886    45   689998877543

>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6

Probab=90.13  E-value=2.9  Score=33.20  Aligned_cols=95  Identities=16%  Similarity=0.312  Sum_probs=57.0

Q ss_pred             EEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhh---cCCCcEEEEEcCCCcchHHHHHhh
Q psy1766          21 ICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKG---LNNGRVHLYRTSKREGLIRARMFG   97 (214)
Q Consensus        21 Ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~---~~~~~v~~i~~~~~~G~~~a~n~g   97 (214)
                      +|.++.  ..|...|+.+.... .   .+|+||-....     .+.++++...   + +.++.++..+...|.+.+.-.|
T Consensus        29 lpi~gk--pli~~~l~~l~~~g-i---~~I~vv~~~~~-----~~~i~~~l~~g~~~-g~~i~~~~~~~~~G~~~al~~a   96 (296)
T 1mc3_A           29 LPIYDK--PMIYYPLSVLMLAG-I---REILIITTPED-----KGYFQRLLGDGSEF-GIQLEYAEQPSPDGLAQAFIIG   96 (296)
T ss_dssp             SEETTE--ETTHHHHHHHHHTT-C---CEEEEEECTTT-----HHHHHHHHTTSGGG-TCEEEEEECSSCCCSTHHHHHT
T ss_pred             eEECCe--eHHHHHHHHHHhCC-C---CcEEEEechhH-----HHHHHHHHhccccc-CceEEEeccCCCCCHHHHHHHH
Confidence            455554  46666676665432 2   38887764322     2234444432   2 2346666666667888888888


Q ss_pred             hhhcCC-CEEEEEcCCCccCcCchHHHHHHHh
Q psy1766          98 AKYATG-KVLVFLDSHIEVNTHWLEPLLVPIA  128 (214)
Q Consensus        98 ~~~a~g-d~i~~lD~D~~~~~~~l~~l~~~~~  128 (214)
                      ++.... ++++++ +|..+....+..+++...
T Consensus        97 ~~~i~~~~~~lv~-gD~~~~~~~l~~~l~~~~  127 (296)
T 1mc3_A           97 ETFLNGEPSCLVL-GDNIFFGQGFSPKLRHVA  127 (296)
T ss_dssp             HHHHTTSCEEEEE-TTEEEECSSCHHHHHHHT
T ss_pred             HHHhCCCCEEEEE-CCccccccCHHHHHHHHH
Confidence            877654 555555 887764466788877764

>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*

Probab=88.25  E-value=2.1  Score=32.33  Aligned_cols=100  Identities=11%  Similarity=0.162  Sum_probs=60.1

Q ss_pred             CCCceEEEEEEeCCC---------------chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCC
Q psy1766          13 TLPSTSVIICFYNEH---------------PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNG   77 (214)
Q Consensus        13 ~~p~vSVIIp~~n~~---------------~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~   77 (214)
                      .|+++.+||++-...               ...+..+++.+.+.  .   .+|+||- ...  +   ++.+.+..++ +.
T Consensus        15 ~m~~~~~iIlA~G~g~R~~~~~K~l~~i~g~pli~~~l~~l~~~--~---~~i~vv~-~~~--~---~~~~~~~~~~-~~   82 (232)
T 2xme_A           15 RIKLMKAVILAAGLGTRLGGVPKPLVRVGGCEIILRTMKLLSPH--V---SEFIIVA-SRY--A---DDIDAFLKDK-GF   82 (232)
T ss_dssp             -CCCEEEEEEECC------CCCGGGCEETTEEHHHHHHHHHGGG--E---EEEEEEE-STT--H---HHHHHHHTTS-CC
T ss_pred             ccccceEEEECCcCcCcCCCCCcEEeEECCEEHHHHHHHHHHHh--C---CEEEEEe-CCh--H---HHHHHHHHhc-CC
Confidence            355677777764332               14455566666544  2   3777776 322  2   2333333333 34


Q ss_pred             cEEEEEcCCC-cchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHH
Q psy1766          78 RVHLYRTSKR-EGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLV  125 (214)
Q Consensus        78 ~v~~i~~~~~-~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~  125 (214)
                      ++.++..+.. .|.+.+...|++....+ ++++.+|..++++.++.+++
T Consensus        83 ~~~~v~~~~~~~g~~~~i~~a~~~~~~~-~lv~~~D~p~~~~~~~~l~~  130 (232)
T 2xme_A           83 NYKIVRHDRPEKGNGYSLLVAKNHVEDR-FILTMGDHVYSQQFIEKAVR  130 (232)
T ss_dssp             CEEEEECSCGGGCHHHHHHTTGGGCCSS-EEEEETTEEECHHHHHHHTT
T ss_pred             cEEEEECCCCCCCcHHHHHHHHHHCCCC-EEEEcCCcccCHHHHHHHHh
Confidence            6788775433 68888999999888744 55788998777776766654

>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21

Probab=84.87  E-value=5.4  Score=29.62  Aligned_cols=55  Identities=11%  Similarity=0.100  Sum_probs=42.7

Q ss_pred             cEEEEEcCCCcchHHHHHhhhhhcCCCEEEEEcCCCcc-CcCchHHHHHHHhcCCCEEEEee
Q psy1766          78 RVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEV-NTHWLEPLLVPIAERTNTVTVPI  138 (214)
Q Consensus        78 ~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~-~~~~l~~l~~~~~~~~~~vv~~~  138 (214)
                      ++.++..+  .|.+.+...|++.. .+.++++-+|... +++.+..+++   .+.+.+++|.
T Consensus        66 ~~~~v~~~--~gl~~sl~~a~~~~-~~~vlvi~~D~P~l~~~~i~~l~~---~~~~~vv~p~  121 (211)
T 2i5e_A           66 EARVLLDE--KDLNEALNRYLKEA-EEPVLIVMADLPLLSPEHIKEISS---TEKDVCIVPG  121 (211)
T ss_dssp             SSEEEECC--SCHHHHHHHHHHHC-CSCEEEECSCCTTCCHHHHHHHTT---CSSSEEEEEC
T ss_pred             CCEEEECC--CCHHHHHHHHHHhc-CCCEEEEcCCcCCCCHHHHHHHHc---cCCCeEEEEe
Confidence            56677655  78999999998877 6889999999874 8888888877   4456677764

>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*

Probab=84.77  E-value=5.1  Score=32.41  Aligned_cols=95  Identities=11%  Similarity=0.112  Sum_probs=49.8

Q ss_pred             CCceEEEEEEeCCC-chHHHHHHHHHHhcCCCCCccEEE-EEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCC-c--
Q psy1766          14 LPSTSVIICFYNEH-PATLYRSVQTLLSRTGQSLLHEII-LVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKR-E--   88 (214)
Q Consensus        14 ~p~vSVIIp~~n~~-~~~l~~~l~sl~~q~~~~~~~eii-vVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~-~--   88 (214)
                      |.+...|+.+-|.. +..+..++.||......   ..++ +++++-+  +...+.++++   .  ..+..+..-.. .  
T Consensus         1 Ms~~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~---~~l~vlv~~~is--~~~~~~L~~~---~--~~v~~v~~l~~~~~~   70 (333)
T 1ll2_A            1 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTS---RRLAVLTTPQVS--DTMRKALEIV---F--DEVITVDILDSGDSA   70 (333)
T ss_dssp             CCSEEEEEEESSHHHHHHHHHHHHHHHHTTCC---SEEEEEECTTSC--HHHHHHHHHH---C--SEEEECCTTSTTSTT
T ss_pred             CCceEEEEEEeCHHHHHHHHHHHHHHHHhCCC---CCEEEEEcCCCC--HHHHHHHHHh---C--CEEEEEeecCCcchh
Confidence            33444555555554 45556667787765433   3554 4444433  3444444443   1  33444432111 0  


Q ss_pred             ----------chHHHHHhhhhhcCCCEEEEEcCCCccCcC
Q psy1766          89 ----------GLIRARMFGAKYATGKVLVFLDSHIEVNTH  118 (214)
Q Consensus        89 ----------G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~  118 (214)
                                .....+-........+-|++||+|..+..+
T Consensus        71 ~~~~~~~~~~~~t~~Kl~i~~l~~ydrvlYLDaD~lv~~d  110 (333)
T 1ll2_A           71 HLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLAN  110 (333)
T ss_dssp             HHHHHHCGGGHHHHHHGGGGGCTTCSEEEEECTTEEECSC
T ss_pred             hcccccccchHHHHHHHHHhHhcCCCeEEEEeCCEEeccC
Confidence                      112233344444567899999999998655

>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13

Probab=83.46  E-value=4.2  Score=30.50  Aligned_cols=90  Identities=11%  Similarity=0.068  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhc---CCCE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA---TGKV  105 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a---~gd~  105 (214)
                      ..|..+++.+.+.....   +|+||-+...     .+.++++.. + ...+.+..  ...+...+...|++.+   ..++
T Consensus        42 pli~~~i~~l~~~~~~~---~ivVv~~~~~-----~~~~~~~~~-~-~~~~~~~~--gg~~~~~sv~~al~~~~~~~~~~  109 (234)
T 1vpa_A           42 MLFEYPLSTFLKSEAID---GVVIVTRREW-----FEVVEKRVF-H-EKVLGIVE--GGDTRSQSVRSALEFLEKFSPSY  109 (234)
T ss_dssp             ETTHHHHHHHHHCTTCS---EEEEEECGGG-----HHHHHTTCC-C-TTEEEEEE--CCSSHHHHHHHHHHHHGGGCCSE
T ss_pred             EHHHHHHHHHHcCCCCC---eEEEEEChHH-----HHHHHHHhc-c-CCceEEeC--CCCcHHHHHHHHHHHhhhcCCCE
Confidence            56666777776543233   8888765322     122233211 1 12333322  1223555566666655   3689


Q ss_pred             EEEEcCCCc-cCcCchHHHHHHHhcC
Q psy1766         106 LVFLDSHIE-VNTHWLEPLLVPIAER  130 (214)
Q Consensus       106 i~~lD~D~~-~~~~~l~~l~~~~~~~  130 (214)
                      ++++++|.. ++++.+..+++.+.+.
T Consensus       110 vlv~~~D~Pli~~~~i~~l~~~~~~~  135 (234)
T 1vpa_A          110 VLVHDSARPFLRKKHVSEVLRRARET  135 (234)
T ss_dssp             EEEEETTSCCCCHHHHHHHHHHHHHH
T ss_pred             EEEecCcccCCCHHHHHHHHHHHHhc
Confidence            999999985 6888999999877543

>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp}

Probab=83.43  E-value=13  Score=28.42  Aligned_cols=59  Identities=12%  Similarity=0.057  Sum_probs=44.8

Q ss_pred             cEEEEEcCCCcchHHHHHhhhhhc---CCCEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEee
Q psy1766          78 RVHLYRTSKREGLIRARMFGAKYA---TGKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVPI  138 (214)
Q Consensus        78 ~v~~i~~~~~~G~~~a~n~g~~~a---~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~~  138 (214)
                      .+.+.. +...|.+..++.|++.+   ..+-++++-+|.- +++..|..+++.+.. .+.+++|.
T Consensus        76 ~~~~~~-q~~~gLg~rl~~a~~~~~~~~~~~vliigaD~P~L~~~~l~~a~~~l~~-~d~VigPa  138 (242)
T 3cgx_A           76 QHMFAA-QQGLDLGERMKHAMQKAFDDGYDRVVLMGSDIPDYPCELVQKALNDLQH-YDAAIGPA  138 (242)
T ss_dssp             TSEEEE-CCSSSHHHHHHHHHHHHHHTTCSEEEEECSSCTTCCHHHHHHHHHHTTT-CSEEEEEB
T ss_pred             CcEEec-CCCCCHHHHHHHHHHHHHhCCCCeEEEEcCCCCCCCHHHHHHHHHHhcc-CCeEEEEc
Confidence            455554 45678999999999876   4577999999988 588999999887755 56777764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	214
d1xhba2	328	c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosa	3e-26
d2bo4a1	381	c.68.1.18 (A:2-382) Mannosylglycerate synthase, MG	3e-18
d1omza_	265	c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransf	1e-07
d1qg8a_	255	c.68.1.1 (A:) Spore coat polysaccharide biosynthes	0.002

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 328

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  101 bits (251), Expect = 3e-26
 Identities = 75/169 (44%), Positives = 110/169 (65%), Gaps = 3/169 (1%)

Query: 5   CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
           C  + +P  LP+TSV+I F+NE  +TL R+V ++++R+ + ++ EI+LV+D SE    L 
Sbjct: 12  CKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDF-LK 70

Query: 65  GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
             +E++VK L    VH+ R  +R GLIRAR+ GA  + G+V+ FLD+H E    WLEPLL
Sbjct: 71  RPLESYVKKLKV-PVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLL 129

Query: 125 VPIAERTNTVTVPIIDIINADTFQYT-SSALVRGGFNWGLHFKWENLPK 172
             I     TV  PIID+I+ DTF+Y   S +  GGFNW L+F+W  +P+
Sbjct: 130 ARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQ 178

>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]} Length = 381

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MGS-like
domain: Mannosylglycerate synthase, MGS
species: Rhodothermus marinus [TaxId: 29549]

 Score = 79.6 bits (196), Expect = 3e-18
 Identities = 24/163 (14%), Positives = 45/163 (27%), Gaps = 24/163 (14%)

Query: 17  TSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFS--------EYPSNLHGEVE 68
           + V+  F +EHP  L  +V+   +      +HE++ +                 +     
Sbjct: 1   SLVVFPFKHEHPEVLLHNVRVAAA---HPRVHEVLCIGYERDQTYEAVERAAPEISRATG 57

Query: 69  TFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHI-EVNTHWLEPLLVPI 127
           T V      R+   R  K +G+  A  +  +    + + F D+ I      W+       
Sbjct: 58  TPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAA 117

Query: 128 AERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENL 170
                                Y   A       W +      L
Sbjct: 118 DFG------------YGLVRHYFPRASTDAMITWMITRTGFAL 148

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Exostosin
domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 9/111 (8%)

Query: 14  LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKG 73
           L S ++I+  YN     L R +    +      LH++I+V +            E     
Sbjct: 2   LDSFTLIMQTYNR-TDLLLRLLNHYQA---VPSLHKVIVVWNNVGEKG-----PEELWNS 52

Query: 74  LNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
           L    + +    +    +R R+          ++ +D    ++   L    
Sbjct: 53  LGPHPIPVIFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAF 103

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} Length = 255

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFS 57
          P  SVI+  YN+    + +S+ ++LS+T      E+ +++D S
Sbjct: 1  PKVSVIMTSYNK-SDYVAKSISSILSQTFSDF--ELFIMDDNS 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	214
d1xhba2	328	Polypeptide N-acetylgalactosaminyltransferase 1, N	100.0
d1qg8a_	255	Spore coat polysaccharide biosynthesis protein Sps	99.93
d1omza_	265	Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga	99.9
d2bo4a1	381	Mannosylglycerate synthase, MGS {Rhodothermus mari	99.42
d1fo8a_	343	N-acetylglucosaminyltransferase I {Rabbit (Oryctol	98.45
d1pzta_	271	beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos	97.57
d1v82a_	252	Beta-1,3-glucuronyltransferase 1, GlcAT-P {Human (	97.25
d3cu0a1	261	1,3-Glucuronyltransferase I (glcAT-I) {Human (Homo	96.58
d1qwja_	228	CMP acylneuraminate synthetase {Mouse (Mus musculu	94.46
d1fxoa_	292	RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}	94.4
d1mc3a_	291	RffH {Escherichia coli [TaxId: 562]}	94.32
d1lvwa_	295	RmlA (RfbA) {Archaeon Methanobacterium thermoautot	93.46
d1w77a1	226	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	92.44
d1h7ea_	245	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	91.69
d1w55a1	205	IspD/IspF bifunctional enzyme, CDP-me synthase dom	91.54
d1i52a_	225	4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me)	90.36
d1e5ka_	188	Molybdenum cofactor biosynthesis protein MobA {Esc	89.13
d1ga8a_	282	Galactosyltransferase LgtC {Neisseria meningitidis	89.02
d1vica_	255	CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn	84.17
d2dpwa1	231	Uncharacterized protein TTHA0179 {Thermus thermoph	82.32
d1eyra_	225	CMP acylneuraminate synthetase {Neisseria meningit	81.85
d1g97a2	250	N-acetylglucosamine 1-phosphate uridyltransferase	80.56

>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.2e-36  Score=246.30  Aligned_cols=200  Identities=39%  Similarity=0.686  Sum_probs=166.2

Q ss_pred             CCccccCCcCCCCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCCh-HHHHHHHHhhcCCCcE
Q psy1766           1 MSIICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL-HGEVETFVKGLNNGRV   79 (214)
Q Consensus         1 ~~~~~~~~~~~~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t-~~~~~~~~~~~~~~~v   79 (214)
                      |.+.|+..+|+++||.||||||+||+....|.+||+|+++|+++...+|||||||||+  |++ .+.++++.++. ..++
T Consensus         8 r~~~~~~~~~~~~~P~vSIIIp~yNe~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~--d~~~~~~l~~~~~~~-~~~i   84 (328)
T d1xhba2           8 RLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASE--RDFLKRPLESYVKKL-KVPV   84 (328)
T ss_dssp             SCGGGGTCCCCSCCCCEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCC--CGGGTHHHHHHHHSS-SSCE
T ss_pred             CChhhhhccCCCCCCCEEEEEeccCCcHHHHHHHHHHHHhcCCCCCCeEEEEEECCCC--hhhHHHHHHHHHHhc-CCCe
Confidence            4578999999999999999999999873579999999999998875579999999999  554 56778877765 5689


Q ss_pred             EEEEcCCCcchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeeecCCcceeec-CCceeee
Q psy1766          80 HLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTS-SALVRGG  158 (214)
Q Consensus        80 ~~i~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~~-~~~~~g~  158 (214)
                      +++++++|.|.+.|+|.|++.|+|+||+|+|+|+.+.|+||+.++..+.+++..+++|.++.++..++.+.. .....++
T Consensus        85 ~vi~~~~n~G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~~~~~~~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~  164 (328)
T d1xhba2          85 HVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGG  164 (328)
T ss_dssp             EEEECSSCCCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEE
T ss_pred             EEEEecccccchHHHHHHHHhhhcceeeecCcccccChhHHHHHHHHHhcCCCeEEecceeeeccCceeeccCCcccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999998888764 4566788


Q ss_pred             eEecccceeecCCccccCCCCC------CCCCCCCccc-------hhccccccccccc
Q psy1766         159 FNWGLHFKWENLPKVKTSSNPS------YLPLQYTSSA-------LVRGGFNWGLHFK  203 (214)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-------~~~ggf~~~~~~~  203 (214)
                      +.|.+.+.|..++.........      ..+...++++       ..+||||..+.++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~vGgfDe~~~~~  222 (328)
T d1xhba2         165 FNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIW  222 (328)
T ss_dssp             ECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHHTTSCCTTSCTT
T ss_pred             ccccccccccccchhhhhccccccccccccceecceeeeeeHHHHHHhCCCCCCCcCc
Confidence            9999988888777643221111      1133444444       3899999988654

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.93  E-value=5.6e-26  Score=179.04  Aligned_cols=114  Identities=18%  Similarity=0.308  Sum_probs=103.4

Q ss_pred             CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC--------C
Q psy1766          15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS--------K   86 (214)
Q Consensus        15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~--------~   86 (214)
                      |+||||||+||++ .+|.+||+|+++|++++  +|||||||||+  |+|.++++++..+   .++++++.+        +
T Consensus         1 P~vSiiip~yN~~-~~l~~~l~Si~~Qt~~~--~eiivvdd~S~--d~t~~~l~~~~~~---~~i~~~~~~~~~~~~~~~   72 (255)
T d1qg8a_           1 PKVSVIMTSYNKS-DYVAKSISSILSQTFSD--FELFIMDDNSN--EETLNVIRPFLND---NRVRFYQSDISGVKERTE   72 (255)
T ss_dssp             CCEEEEEEESSCT-TTHHHHHHHHHTCSCCC--EEEEEEECSCC--HHHHHHHGGGGGS---TTEEEEECCCCSHHHHHS
T ss_pred             CEEEEEEecCCCH-HHHHHHHHHHHhCCCCC--eEEEEEECCCC--ccHHHHHHHhhhh---cccccccccccccccccc
Confidence            8999999999999 99999999999999998  89999999999  8999999998664   589998864        6


Q ss_pred             CcchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCC-EEEE
Q psy1766          87 REGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTN-TVTV  136 (214)
Q Consensus        87 ~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~-~vv~  136 (214)
                      +.|.++|+|.|++.|+|+||+|+|+|+.+.|++|+.+++.+.+++. .++.
T Consensus        73 ~~g~~~a~N~gi~~a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v~  123 (255)
T d1qg8a_          73 KTRYAALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIY  123 (255)
T ss_dssp             SCHHHHHHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEE
T ss_pred             cchhcccccccccccccccccccccccccccchHHHHHHHHHhCCCCCeEe
Confidence            8899999999999999999999999999999999999999976643 3443

>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Exostosin
domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.6e-24  Score=166.65  Aligned_cols=115  Identities=12%  Similarity=0.070  Sum_probs=95.1

Q ss_pred             CCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHH
Q psy1766          14 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRA   93 (214)
Q Consensus        14 ~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a   93 (214)
                      |-++|||||+||++ +.|.+||+|+.+|++++   |+|||||+|+  |++.+.+.+....   ....++...+|.|.+.|
T Consensus         2 ~~~~tvii~tyn~~-~~l~~~l~sl~~q~~~~---~~iiV~d~~s--d~~~~~i~~~~~~---~~~~~~~~~~~~g~~~a   72 (265)
T d1omza_           2 LDSFTLIMQTYNRT-DLLLRLLNHYQAVPSLH---KVIVVWNNVG--EKGPEELWNSLGP---HPIPVIFKPQTANKMRN   72 (265)
T ss_dssp             TTCEEEEEEESSCH-HHHHHHHHHHTTSTTEE---EEEEEECCTT--CCCTHHHHHHTCC---CSSCEEEEECSSCCGGG
T ss_pred             CCcEEEEEEcCCCH-HHHHHHHHHHHcCCCcC---eEEEEECCCC--CccHHHHHHHhcc---cceEEEEecCCCCchhh
Confidence            66899999999999 99999999999999987   7788888777  4555555544333   23344444678999999


Q ss_pred             HHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEe
Q psy1766          94 RMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP  137 (214)
Q Consensus        94 ~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~  137 (214)
                      +|.|++.|+||||+|+|+|+.+.|++|+.+++.++++++.+++.
T Consensus        73 ~n~~~~~a~ge~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~  116 (265)
T d1omza_          73 RLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGF  116 (265)
T ss_dssp             GGSCCTTCCSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEES
T ss_pred             hhhhHHhCCcCEEEEeCcccCCCHHHHHHHHHHHHhCCCcceec
Confidence            99999999999999999999999999999999998877666553

>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: MGS-like
domain: Mannosylglycerate synthase, MGS
species: Rhodothermus marinus [TaxId: 29549]

Probab=99.42  E-value=1.1e-13  Score=113.51  Aligned_cols=114  Identities=13%  Similarity=0.098  Sum_probs=74.1

Q ss_pred             EEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhc--CCCcEEEEEc----CCCcchH
Q psy1766          18 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGL--NNGRVHLYRT----SKREGLI   91 (214)
Q Consensus        18 SVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~--~~~~v~~i~~----~~~~G~~   91 (214)
                      -||||+|||+ ..+...+.++....+.-  .||||+||+|+  |.+.++.+......  .+..+.....    ..+.|++
T Consensus         2 lVVIP~~NEe-~~il~~~v~~~a~~P~~--~eIvVvDdsSd--Dtt~~i~~~~~~~~~~~~~~v~~~~~~~l~~~~~GKG   76 (381)
T d2bo4a1           2 LVVFPFKHEH-PEVLLHNVRVAAAHPRV--HEVLCIGYERD--QTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKG   76 (381)
T ss_dssp             EEEEECCSSC-HHHHHHHHHHHHHSTTC--CEEEEEESSCC--HHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHH
T ss_pred             EEEEEcCCCc-HHHHHHHHHHHHhCCCe--eEEEEEcCCCC--CcHHHHHHHhhhhhccccccchhhhhcccccccCCCc
Confidence            3899999998 54444444555555433  48888777776  55554444332210  0122322211    1233444


Q ss_pred             ----HHHHhhhhhcCCCEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEEE
Q psy1766          92 ----RARMFGAKYATGKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus        92 ----~a~n~g~~~a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~  136 (214)
                          .|+..|++.++|++|+|+|+|.. ..|++++.++..+..+.+.++.
T Consensus        77 ~g~~~A~~~g~~~a~gd~lvflDADl~~~~pe~i~~L~~~i~~g~d~V~g  126 (381)
T d2bo4a1          77 DGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADFGYGLVRH  126 (381)
T ss_dssp             HHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHhhhcCeEEE
Confidence                56777778899999999999984 7899999999999887776654

>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: N-acetylglucosaminyltransferase I
domain: N-acetylglucosaminyltransferase I
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.45  E-value=4.3e-07  Score=72.50  Aligned_cols=116  Identities=13%  Similarity=0.171  Sum_probs=80.7

Q ss_pred             CCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC--------
Q psy1766          14 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS--------   85 (214)
Q Consensus        14 ~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~--------   85 (214)
                      |+-+-|+|.+||+. . +.+||++|+++.+....+.|+|.-||+.  +++.+.++++...     +.++...        
T Consensus         1 ~~viPVlv~a~NRP-~-l~r~LesLlk~~p~~~~~~I~Vs~DG~~--~~~~~~v~~~~~~-----v~~I~~~~~~~~~~~   71 (343)
T d1fo8a_           1 LAVIPILVIACDRS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGH--EETAQVIASYGSA-----VTHIRQPDLSNIAVQ   71 (343)
T ss_dssp             CCCCCEEEEESSCT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTC--HHHHHHHHTTGGG-----SEEEECSCCCCCCCC
T ss_pred             CCcccEEEEEcCHH-H-HHHHHHHHHhcCccccCccEEEEecCCc--hhHHHHHHHHHHH-----HHHhcCCccccceec
Confidence            46788999999997 5 8999999998765554478999999998  6777777766432     3333321        


Q ss_pred             -------CCcchHHHHHhhhhh----cCCCEEEEEcCCCccCcCch---HHHHHHHhcCCCEEEEee
Q psy1766          86 -------KREGLIRARMFGAKY----ATGKVLVFLDSHIEVNTHWL---EPLLVPIAERTNTVTVPI  138 (214)
Q Consensus        86 -------~~~G~~~a~n~g~~~----a~gd~i~~lD~D~~~~~~~l---~~l~~~~~~~~~~vv~~~  138 (214)
                             .+.|.+...-.|+..    ...+.+++|.+|+.+.|+++   ..++..++.++.+.++..
T Consensus        72 ~~~~k~~~n~giarhy~~AL~~~F~~~~~~~~IiLEDDl~~spdFf~y~~~~l~~~~~D~~i~~IS~  138 (343)
T d1fo8a_          72 PDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCVSA  138 (343)
T ss_dssp             TTCGGGHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEEEES
T ss_pred             chhhcccchhHHHHHHHHHHHHHhcccCCceEEEEecCceeeHHHHHHHHHHHHHHhcCCCEEEEec
Confidence                   123333333334433    34689999999999999998   555566677777665544

>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: beta 1,4 galactosyltransferase (b4GalT1)
domain: beta 1,4 galactosyltransferase (b4GalT1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.57  E-value=0.00013  Score=56.21  Aligned_cols=75  Identities=21%  Similarity=0.200  Sum_probs=54.7

Q ss_pred             CceEEEEEEeCCCchHHH---HHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchH
Q psy1766          15 PSTSVIICFYNEHPATLY---RSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLI   91 (214)
Q Consensus        15 p~vSVIIp~~n~~~~~l~---~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~   91 (214)
                      -+++||||.+|++ +.|.   ..+..+++....+  ++|+||+...+                           ..+..+
T Consensus        49 ~kvaIIIPyRdR~-~hL~~fl~~l~~~L~~q~~~--y~I~vieQ~~~---------------------------~~FNRg   98 (271)
T d1pzta_          49 HKVAIIIPFRNRQ-EHLKYWLYYLHPILQRQQLD--YGIYVINQAGE---------------------------SMFNRA   98 (271)
T ss_dssp             CEEEEEEEESSCH-HHHHHHHHHHHHHHHHTTCE--EEEEEEEECSS---------------------------SCCCHH
T ss_pred             ceEEEEEecCChH-HHHHHHHHHHHHHHHhcCCC--EEEEEEeccCC---------------------------cchhhh
Confidence            3799999999999 6555   4555555544333  89999998764                           135667


Q ss_pred             HHHHhhhhhc----CCCEEEEEcCCCccCcCc
Q psy1766          92 RARMFGAKYA----TGKVLVFLDSHIEVNTHW  119 (214)
Q Consensus        92 ~a~n~g~~~a----~gd~i~~lD~D~~~~~~~  119 (214)
                      ...|.|+..|    ..++++|.|.|..+..+.
T Consensus        99 ~llNiGf~~a~~~~~~~~~ifHDVDllP~~~~  130 (271)
T d1pzta_          99 KLLNVGFKEALKDYDYNCFVFSDVDLIPMNDH  130 (271)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEEECTTEEESBTT
T ss_pred             hhhhHHHHHhhhccCccEEEEecCCcCccccc
Confidence            8888888766    457899999998876554

>d1v82a_ c.68.1.7 (A:) Beta-1,3-glucuronyltransferase 1, GlcAT-P {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: 1,3-glucuronyltransferase
domain: Beta-1,3-glucuronyltransferase 1, GlcAT-P
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.0007  Score=51.02  Aligned_cols=99  Identities=17%  Similarity=0.190  Sum_probs=64.2

Q ss_pred             CCceEEEEEEeCCC--chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc--CCC--
Q psy1766          14 LPSTSVIICFYNEH--PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT--SKR--   87 (214)
Q Consensus        14 ~p~vSVIIp~~n~~--~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~--~~~--   87 (214)
                      +|.|-||.|+|.+.  ...|.+.-+.|. .. ++  .-.|||+|+....+.+.+++++       .++.+.+.  ...  
T Consensus         1 lp~I~vVTPTy~R~~Q~~~LtRLa~TL~-lV-p~--l~WIVVEda~~~t~~va~lL~~-------sgl~y~HL~~~~p~~   69 (252)
T d1v82a_           1 LPTIHVVTPTYSRPVQKAELTRMANTLL-HV-PN--LHWLVVEDAPRRTPLTARLLRD-------TGLNYTHLHVETPRN   69 (252)
T ss_dssp             CCEEEEEEEECCSTTHHHHHHHHHHHHT-TC-SS--EEEEEEESSSSCCHHHHHHHHH-------HCCEEEEEECCCCHH
T ss_pred             CCCEEEECCCCCchhhHHHHHHHHhHHh-cC-CC--ceEEEEeCCCCCCHHHHHHHHH-------cCCceEeeccCCCcc
Confidence            58899999999987  455666555653 33 44  5999999865310234444444       24555443  110  


Q ss_pred             ------------cchHHHHHhhhhhcC---------CCEEEEEcCCCccCcCchHHH
Q psy1766          88 ------------EGLIRARMFGAKYAT---------GKVLVFLDSHIEVNTHWLEPL  123 (214)
Q Consensus        88 ------------~G~~~a~n~g~~~a~---------gd~i~~lD~D~~~~~~~l~~l  123 (214)
                                  .-....||.|++..+         .-+|.|.|+|..++-..+++|
T Consensus        70 ~~~~~~~~~~~~~rg~~qRn~aL~~iR~~~~~~~~~~GVVyFADDdNtYsl~lFdem  126 (252)
T d1v82a_          70 YKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEM  126 (252)
T ss_dssp             HHCCC-----CCCTTHHHHHHHHHHHHHHSCTTCCCCEEEEECCTTSEECHHHHHHH
T ss_pred             cccccccccccccccHHHHHHHHHHHHHhcccccCcceEEEEecCCCcccHHHHHHH
Confidence                        001357999998652         368889999999999888775

>d3cu0a1 c.68.1.7 (A:75-335) 1,3-Glucuronyltransferase I (glcAT-I) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: 1,3-glucuronyltransferase
domain: 1,3-Glucuronyltransferase I (glcAT-I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.0089  Score=44.93  Aligned_cols=97  Identities=18%  Similarity=0.138  Sum_probs=61.8

Q ss_pred             ceEEEEEEeCCC--chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC--C--C--
Q psy1766          16 STSVIICFYNEH--PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS--K--R--   87 (214)
Q Consensus        16 ~vSVIIp~~n~~--~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~--~--~--   87 (214)
                      .|-||.|+|-+.  ...|.+.-+.|.. . ++  .-.|||+|+....+.+.+++++    .   ++.+.+..  .  .  
T Consensus         2 TIyvVTPTY~R~~Q~a~LtRLa~TL~l-V-p~--l~WIVVEDa~~~t~~v~~lL~~----s---gl~y~HL~~~tp~~~~   70 (261)
T d3cu0a1           2 TIYVVTPTYARLVQKAELVRLSQTLSL-V-PR--LHWLLVEDAEGPTPLVSGLLAA----S---GLLFTHLVVLTPKAQR   70 (261)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHHHHHTT-S-SS--EEEEEEESSSSCCHHHHHHHHH----H---CSEEEEEECCCC----
T ss_pred             eEEEECCCCCCchhHHHHHHHHHHHhc-C-CC--eeEEEEECCCCCCHHHHHHHHH----c---CCceEEeecCCchhhc
Confidence            577999999987  4555555555543 3 44  5999999875410223334433    2   44444421  1  0  


Q ss_pred             ----------cchHHHHHhhhhhcC-----------------CCEEEEEcCCCccCcCchHHH
Q psy1766          88 ----------EGLIRARMFGAKYAT-----------------GKVLVFLDSHIEVNTHWLEPL  123 (214)
Q Consensus        88 ----------~G~~~a~n~g~~~a~-----------------gd~i~~lD~D~~~~~~~l~~l  123 (214)
                                .-....||.|++..+                 .-+|.|.|+|..++-..+++|
T Consensus        71 ~~~~~~~~~~prgv~qRn~aL~~ir~~~~~~~~~~~~~~~~~~GVVyFADDdNtYsl~LF~em  133 (261)
T d3cu0a1          71 LREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEM  133 (261)
T ss_dssp             -------CCCCCSHHHHHHHHHHHTTCCCEEEECCSCCCTTCCEEEEECCTTSEECHHHHHHH
T ss_pred             ccccCcccccccCHHHHHHHHHHHHHcccccccccccccCCCceEEEEecCCCcccHHHHHHH
Confidence                      011358999998774                 257889999999999888885

>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.46  E-value=0.29  Score=35.02  Aligned_cols=108  Identities=9%  Similarity=0.058  Sum_probs=66.1

Q ss_pred             CceEEEEEEeCCC-------------chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEE
Q psy1766          15 PSTSVIICFYNEH-------------PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHL   81 (214)
Q Consensus        15 p~vSVIIp~~n~~-------------~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~   81 (214)
                      |+|.+|||++...             ...+..+++++.+...-+   +|||..|.    +.+.+.+..    +   ++..
T Consensus         2 ~ki~aiIpaR~~S~Rlp~K~l~~i~gkpLi~~~i~~~~ks~~id---~Iivstd~----~~i~~~~~~----~---~~~~   67 (228)
T d1qwja_           2 PHLAALVLARGGSKGIPLKNIKRLAGVPLIGWVLRAALDAGVFQ---SVWVSTDH----DEIENVAKQ----F---GAQV   67 (228)
T ss_dssp             CCEEEEEECCSCCSSSSCTTTSEETTEEHHHHHHHHHHHHTCCS---EEEEEESC----HHHHHHHHH----T---TCEE
T ss_pred             CCEEEEeccCCCCCCCCCcchhhhCCeeHHHHHHHHHHhcCCcc---eEEEecch----hhhhhhhhh----c---Cccc
Confidence            7899999998543             235667888877665544   77776553    234444444    3   3444


Q ss_pred             EEcCC-C----cchHHHHHhhhhhc-CCCEEEEEcCCCcc-CcCchHHHHHHHhcCCCEEEE
Q psy1766          82 YRTSK-R----EGLIRARMFGAKYA-TGKVLVFLDSHIEV-NTHWLEPLLVPIAERTNTVTV  136 (214)
Q Consensus        82 i~~~~-~----~G~~~a~n~g~~~a-~gd~i~~lD~D~~~-~~~~l~~l~~~~~~~~~~vv~  136 (214)
                      +.... .    .........+++.- ..++++++.+|..+ .++.+..++..+.++....++
T Consensus        68 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~~~d~~~  129 (228)
T d1qwja_          68 HRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVF  129 (228)
T ss_dssp             EECCGGGSSTTCCHHHHHHHHHTTCTTCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEE
T ss_pred             cccccccccccchhhhhhhhccccccccceeeeecccccccCchhhhhhhhhhhccCccccc
Confidence            44221 1    12233344444433 57899999998875 788899999988655444333

>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.40  E-value=0.077  Score=40.59  Aligned_cols=101  Identities=14%  Similarity=0.262  Sum_probs=66.8

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhc--CCCcEEEEEcCCCcchHHHHHhh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGL--NNGRVHLYRTSKREGLIRARMFG   97 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~--~~~~v~~i~~~~~~G~~~a~n~g   97 (214)
                      .+|.++.  +-|...|+.+..+..    .||+||-+...     .+.++++....  .+..++++..+...|.+.|...+
T Consensus        26 llpi~gk--PiI~~~l~~l~~~Gi----~ei~ii~~~~~-----~~~i~~~~~~~~~~g~~I~y~~q~~~~Gta~ai~~a   94 (292)
T d1fxoa_          26 LLPVYDK--PMIYYPLSTLMLAGI----REILIISTPQD-----TPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIG   94 (292)
T ss_dssp             GSEETTE--ETTHHHHHHHHHTTC----CEEEEEECTTT-----HHHHHHHHTTSGGGTCEEEEEECSSCCCGGGHHHHT
T ss_pred             cCEECCE--ehHHHHHHHHHHCCC----CEEEEEeCcCC-----HHHHHHHhccccccCeEEEEccCCCCCcHHHHHHhh
Confidence            4567776  466777777766543    38877766543     23455444321  14578888888899999999999


Q ss_pred             hhhcCCC-EEEEEcCCCccCcCchHHHHHHHhcCCC
Q psy1766          98 AKYATGK-VLVFLDSHIEVNTHWLEPLLVPIAERTN  132 (214)
Q Consensus        98 ~~~a~gd-~i~~lD~D~~~~~~~l~~l~~~~~~~~~  132 (214)
                      .+....+ .++++.+|.....+ +..+++...+...
T Consensus        95 ~~~i~~~~~~lil~dD~~~~~d-l~~ll~~h~~~~~  129 (292)
T d1fxoa_          95 ESFIGNDLSALVLGDNLYYGHD-FHELLGSASQRQT  129 (292)
T ss_dssp             HHHHTTSEEEEEETTEEEECTT-HHHHHHHHHTCCS
T ss_pred             hhhcCCCceEEEEccccccCcC-HHHHHHHHHhCCC
Confidence            9888754 56666666555555 7778777755443

>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RffH
species: Escherichia coli [TaxId: 562]

Probab=94.32  E-value=0.071  Score=40.80  Aligned_cols=101  Identities=15%  Similarity=0.274  Sum_probs=65.1

Q ss_pred             EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHh---hcCCCcEEEEEcCCCcchHHHHHh
Q psy1766          20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVK---GLNNGRVHLYRTSKREGLIRARMF   96 (214)
Q Consensus        20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~---~~~~~~v~~i~~~~~~G~~~a~n~   96 (214)
                      .+|.+|.  ..|...|..+.....    .||+||-+.     .....++.+..   ++ +..+.++..++..|.+.|...
T Consensus        26 llpi~~k--p~i~~~l~~l~~~gi----~~i~iv~~~-----~~~~~~~~~~~~g~~~-gi~I~y~~Q~~plGta~Ai~~   93 (291)
T d1mc3a_          26 LLPIYDK--PMIYYPLSVLMLAGI----REILIITTP-----EDKGYFQRLLGDGSEF-GIQLEYAEQPSPDGLAQAFII   93 (291)
T ss_dssp             GSEETTE--ETTHHHHHHHHHTTC----CEEEEEECT-----TTHHHHHHHHTTSGGG-TCEEEEEECSSCCCSTHHHHH
T ss_pred             ccEECCE--ehHHHHHHHHHHcCC----CEEEEEeCc-----ccHHHHHHHhCchHhh-CcEEEEEECCCCCchHHHHHH
Confidence            4667776  467777777766543    288777553     23445555543   23 457888888889999999999


Q ss_pred             hhhhcCCC-EEEEEcCCCccCcCchHHHHHHHhcCCC
Q psy1766          97 GAKYATGK-VLVFLDSHIEVNTHWLEPLLVPIAERTN  132 (214)
Q Consensus        97 g~~~a~gd-~i~~lD~D~~~~~~~l~~l~~~~~~~~~  132 (214)
                      +.+....+ +++++.+|.....++...+..+.++...
T Consensus        94 a~~fi~~~~~~lvlgddi~~~~~~~~~l~~~~~~~~~  130 (291)
T d1mc3a_          94 GETFLNGEPSCLVLGDNIFFGQGFSPKLRHVAARTEG  130 (291)
T ss_dssp             THHHHTTSCEEEEETTEEEECSSCHHHHHHHTTCCSS
T ss_pred             HHHHhCCCCeEEEECCCcccCcCHHHHHHHHHhCcCC
Confidence            99888655 5666666666666654444444444433

>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: RmlA (RfbA)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.46  E-value=0.24  Score=37.51  Aligned_cols=106  Identities=12%  Similarity=0.186  Sum_probs=64.5

Q ss_pred             CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhc--CCCcEEEEEcCCCcc
Q psy1766          12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGL--NNGRVHLYRTSKREG   89 (214)
Q Consensus        12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~--~~~~v~~i~~~~~~G   89 (214)
                      ...|+-  .+|..+ . ..|..+|+.+..... .   +++||-+..     ..+.++.+....  .+.++.++..+...|
T Consensus        22 ~~~PK~--ll~i~~-k-pii~~~l~~l~~~g~-~---~i~Iv~~~~-----~~~~~~~~~~~~~~~~~~i~~v~e~~~~g   88 (295)
T d1lvwa_          22 RAVSKQ--LLPIYD-K-PMIYYPLSVLMLAGI-R---DILIISTPR-----DLPLYRDLLGDGSQFGVRFSYRVQEEPRG   88 (295)
T ss_dssp             TSSCGG--GSEETT-E-ETTHHHHHHHHHTTC-C---EEEEEECTT-----THHHHHHHHTTSGGGTSEEEEEECSSCCC
T ss_pred             CCCCcc--cCeECC-E-EHHHHHHHHHHHCCC-C---eEEEEeCcc-----cHHHHHHHhccchhcCCEEEEEECCCCCC
Confidence            344543  356544 4 678888888766543 2   777776543     234555554321  134677788788889


Q ss_pred             hHHHHHhhhhhcCC-CEEEEEcCCCccCcCchHHHHHHHhcCC
Q psy1766          90 LIRARMFGAKYATG-KVLVFLDSHIEVNTHWLEPLLVPIAERT  131 (214)
Q Consensus        90 ~~~a~n~g~~~a~g-d~i~~lD~D~~~~~~~l~~l~~~~~~~~  131 (214)
                      .+.|...+...... ++++++-+|.....+ +..++....+..
T Consensus        89 ta~Al~~a~~~l~~~~~~li~~~d~~~~~~-~~~~~~~~~~~~  130 (295)
T d1lvwa_          89 IADAFIVGKDFIGDSKVALVLGDNVFYGHR-FSEILRRAASLE  130 (295)
T ss_dssp             GGGHHHHTHHHHTTSCEEEEETTCCEECTT-HHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHcCCCCEEEEeCCcceechh-HHHHHHHHHhCC
Confidence            99998888887755 577777666555544 555555554433

>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=92.44  E-value=0.28  Score=35.37  Aligned_cols=93  Identities=15%  Similarity=0.099  Sum_probs=55.8

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhc--CCCEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA--TGKVL  106 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a--~gd~i  106 (214)
                      .-|..+|+.+.+....   .+|+||-+.     ...+.++++...+ ...+.++... . ....+.-.|++..  ..++|
T Consensus        33 pli~~~l~~~~~~~~~---~~Iivv~~~-----~~~~~~~~~~~~~-~~~~~~~~gg-~-~r~~sv~~~l~~~~~~~~~V  101 (226)
T d1w77a1          33 PIALYSFFTFSRMPEV---KEIVVVCDP-----FFRDIFEEYEESI-DVDLRFAIPG-K-ERQDSVYSGLQEIDVNSELV  101 (226)
T ss_dssp             EHHHHHHHHHHTCTTE---EEEEEECCG-----GGTHHHHTTTTSC-SSEEEEECCC-S-SHHHHHHHHHHTSCTTCSEE
T ss_pred             eHHHHHHHHHHhhccc---cceeeccch-----hhhhhhhcccccc-cccccccccc-c-hhhhhhhhhHhhhccccccc
Confidence            5677778877554433   377777542     2335666655444 3455555422 1 1233334455443  56999


Q ss_pred             EEEcCCCcc-CcCchHHHHHHHhcCCC
Q psy1766         107 VFLDSHIEV-NTHWLEPLLVPIAERTN  132 (214)
Q Consensus       107 ~~lD~D~~~-~~~~l~~l~~~~~~~~~  132 (214)
                      ++.|+|..+ +++.+..++.....+..
T Consensus       102 li~d~~~P~i~~~~i~~l~~~~~~~~~  128 (226)
T d1w77a1         102 CIHDSARPLVNTEDVEKVLKDGSAVGA  128 (226)
T ss_dssp             EEEETTCTTCCHHHHHHHHHHHHHHSE
T ss_pred             eecccccccccHHHhhhhhhhhhccCc
Confidence            999998775 77888888888765443

>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Escherichia coli, KpsU [TaxId: 562]

Probab=91.69  E-value=1.6  Score=31.21  Aligned_cols=102  Identities=13%  Similarity=0.142  Sum_probs=62.4

Q ss_pred             ceEEEEEEeCCC-------------chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEE
Q psy1766          16 STSVIICFYNEH-------------PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLY   82 (214)
Q Consensus        16 ~vSVIIp~~n~~-------------~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i   82 (214)
                      ++-+|||++...             .+-+..+++.+.+...-+   +|+|+-|..    ..    ......+ +..+. +
T Consensus         2 k~i~iIpAR~~SkRl~~Knl~~i~GkPli~~~i~~a~~~~~~d---~Iiv~td~~----~i----~~~~~~~-~~~~~-~   68 (245)
T d1h7ea_           2 KAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVA---EVWVATDDP----RV----EQAVQAF-GGKAI-M   68 (245)
T ss_dssp             CEEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHTCTTCC---EEEEEESCH----HH----HHHHHHT-TCEEE-E
T ss_pred             CEEEEEcCCCCCcCCCCccccccCCccHHHHHHHHHHhCCCCC---eEEEecccc----cc----hhhhhhc-CceEE-E
Confidence            456677775432             245667887776665544   777765432    22    2233333 22332 2


Q ss_pred             EcCCCcchHHHHHhhhhhcCCCEEEEEcCCCcc-CcCchHHHHHHHhcC
Q psy1766          83 RTSKREGLIRARMFGAKYATGKVLVFLDSHIEV-NTHWLEPLLVPIAER  130 (214)
Q Consensus        83 ~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~-~~~~l~~l~~~~~~~  130 (214)
                      ..+...+.......++.....|+++.+++|..+ ++..+..++..+...
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~d~vv~l~~~~p~~~~~~i~~~~~~~~~~  117 (245)
T d1h7ea_          69 TRNDHESGTDRLVEVMHKVEADIYINLQGDEPMIRPRDVETLLQGMRDD  117 (245)
T ss_dssp             CCSCCSSHHHHHHHHHHHSCCSEEEECCTTCTTCCHHHHHHHHHHHHHC
T ss_pred             ecCccccccHHHHHHHHhcCCCEEEEecchhhhcccccchhhhhccccc
Confidence            223344455566667777789999999999875 667888888877544

>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: IspD/IspF bifunctional enzyme, CDP-me synthase domain
species: Campylobacter jejuni [TaxId: 197]

Probab=91.54  E-value=0.43  Score=34.13  Aligned_cols=86  Identities=8%  Similarity=0.062  Sum_probs=57.7

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcCCCEEEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVF  108 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~  108 (214)
                      .-+..+++++..-....   +|+|+.+..       +.++.+     ...+.++....  ....+.-.|++..+.++|++
T Consensus        30 pii~~~l~~~~~~~~~~---~Ivvv~~~~-------~~~~~~-----~~~~~~v~Gg~--~r~~Sv~~gl~~~~~~~VlI   92 (205)
T d1w55a1          30 PLWLYATKNLSSFYPFK---KIVVTSSNI-------TYMKKF-----TKNYEFIEGGD--TRAESLKKALELIDSEFVMV   92 (205)
T ss_dssp             EHHHHHHHHHHTTSCCS---CEEEEESCH-------HHHHTT-----CSSSEEEECCS--SHHHHHHHHHTTCCSSEEEE
T ss_pred             EHHHHHHHHHHhhcccc---ccccccccc-------cccccc-----ccccccccccc--chhhhhhhhhhhhhhcceee
Confidence            67888888876644433   777774321       233332     34666666322  33455667899999999999


Q ss_pred             EcCCCc-cCcCchHHHHHHHhcCC
Q psy1766         109 LDSHIE-VNTHWLEPLLVPIAERT  131 (214)
Q Consensus       109 lD~D~~-~~~~~l~~l~~~~~~~~  131 (214)
                      .|+|-. ++++.+..+++.+.++.
T Consensus        93 hd~~rP~i~~~~i~~li~~~~~~~  116 (205)
T d1w55a1          93 SDVARVLVSKNLFDRLIENLDKAD  116 (205)
T ss_dssp             EETTCTTCCHHHHHHHHTTGGGCS
T ss_pred             eccCcccCcHHHHHHHHhhhhccc
Confidence            999976 47889999998886553

>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP)
species: Escherichia coli [TaxId: 562]

Probab=90.36  E-value=1.6  Score=30.83  Aligned_cols=94  Identities=14%  Similarity=0.129  Sum_probs=53.4

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhc-CCCEEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA-TGKVLV  107 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a-~gd~i~  107 (214)
                      +-|..+|+.+.+....   .+|+||-+...  .....   .....  ...+.+.....  +...+.-.|+... ..++|+
T Consensus        32 plI~~~i~~~~~~~~i---~~Iivv~~~~~--~~~~~---~~~~~--~~~v~~~~~~~--~~~~sv~~~~~~~~~~~~vl   99 (225)
T d1i52a_          32 TILEHSVHALLAHPRV---KRVVIAISPGD--SRFAQ---LPLAN--HPQITVVDGGD--ERADSVLAGLKAAGDAQWVL   99 (225)
T ss_dssp             EHHHHHHHHHHTSTTE---EEEEEEECTTC--CSGGG---SGGGG--CTTEEEEECCS--SHHHHHHHHHHTSTTCSEEE
T ss_pred             EHHHHHHHHHHhCccc---cccccccchhh--hhhhh---hhhcc--ccccccccCCc--chhHHHHhhhcccCccceee
Confidence            4566677776553332   36666655433  22211   22222  25666665332  2333444455544 689999


Q ss_pred             EEcCCCc-cCcCchHHHHHHHhcCCCEE
Q psy1766         108 FLDSHIE-VNTHWLEPLLVPIAERTNTV  134 (214)
Q Consensus       108 ~lD~D~~-~~~~~l~~l~~~~~~~~~~v  134 (214)
                      +.|+|.. ++++.+..+...+..+....
T Consensus       100 ~~~~~~p~i~~~~~~~~~~~~~~~~~~~  127 (225)
T d1i52a_         100 VHDAARPCLHQDDLARLLALSETSRTGG  127 (225)
T ss_dssp             ECCTTCTTCCHHHHHHHHGGGGTCSSCE
T ss_pred             eeccCCCCCCHHHHHHHHhhhhhccccc
Confidence            9999875 46788888888886655443

>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Molybdenum cofactor biosynthesis protein MobA
domain: Molybdenum cofactor biosynthesis protein MobA
species: Escherichia coli [TaxId: 562]

Probab=89.13  E-value=1.2  Score=30.51  Aligned_cols=86  Identities=7%  Similarity=0.037  Sum_probs=54.0

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcCCCEEEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVF  108 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~  108 (214)
                      ..|...++.+....     .+|+|+-....      +...    .. ...+.........|...+.-.++....++++++
T Consensus        31 ~ll~~~l~~l~~~~-----~~ivv~~~~~~------~~~~----~~-~~~v~~d~~~~~~~~~~g~~~~~~~~~~~~vlv   94 (188)
T d1e5ka_          31 PLWQHVADALMTQL-----SHVVVNANRHQ------EIYQ----AS-GLKVIEDSLADYPGPLAGMLSVMQQEAGEWFLF   94 (188)
T ss_dssp             EHHHHHHHHHHHHC-----SCEEEECSSSH------HHHH----TT-SCCEECCCTTCCCSHHHHHHHHHHHCCSSEEEE
T ss_pred             ehhHHHHhhhcccc-----cccccccCccH------Hhhh----hc-CCCccccccccccchhHHHHHHHHhcccceEEE
Confidence            56777777765542     26666643322      1111    11 223333333445667777788888889999999


Q ss_pred             EcCCCcc-CcCchHHHHHHHhcC
Q psy1766         109 LDSHIEV-NTHWLEPLLVPIAER  130 (214)
Q Consensus       109 lD~D~~~-~~~~l~~l~~~~~~~  130 (214)
                      +-+|..+ +++.+..+++.....
T Consensus        95 ~~~D~P~i~~~~i~~L~~~~~~~  117 (188)
T d1e5ka_          95 CPCDTPYIPPDLAARLNHQRKDA  117 (188)
T ss_dssp             EETTCTTCCTTHHHHHHHTCTTC
T ss_pred             eccCCCCCCHHHHHHHHHhcccc
Confidence            9999875 888888888765433

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=89.02  E-value=0.9  Score=33.69  Aligned_cols=113  Identities=13%  Similarity=0.159  Sum_probs=64.9

Q ss_pred             EEEEEeCCC-chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCC----------
Q psy1766          19 VIICFYNEH-PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKR----------   87 (214)
Q Consensus        19 VIIp~~n~~-~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~----------   87 (214)
                      |+.. -|+. +..+..++.||+...... ...++|++++-+  +...+.+.+..... ...++++.....          
T Consensus         3 Iv~~-~D~nY~~~~~~~i~SL~~~~~~~-~~~~~il~~~~~--~~~~~~l~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~   77 (282)
T d1ga8a_           3 IVFA-ADDNYAAYLCVAAKSVEAAHPDT-EIRFHVLDAGIS--EANRAAVAANLRGG-GGNIRFIDVNPEDFAGFPLNIR   77 (282)
T ss_dssp             EEEE-ECGGGHHHHHHHHHHHHHHCTTS-CCEEEEEESSCC--HHHHHHHHHTSGGG-TTTEEEEECCGGGGTTSCCCCT
T ss_pred             EEEE-CCHHHHHHHHHHHHHHHHHCcCC-CEEEEEEcCCCC--HHHHHHHHHHHHHc-CCeEEEEECCchHhcccccccc
Confidence            3443 4543 577888899998765432 257888888766  56666776665544 567777764211          


Q ss_pred             -cch-HHHHHhhhhh-cCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEe
Q psy1766          88 -EGL-IRARMFGAKY-ATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP  137 (214)
Q Consensus        88 -~G~-~~a~n~g~~~-a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~  137 (214)
                       ... ..+|-...+. ...+-+++||+|..+..+ |..+.+.-..+...++++
T Consensus        78 ~~s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~d-l~~L~~~~~~~~~~aa~~  129 (282)
T d1ga8a_          78 HISITTYARLKLGEYIADCDKVLYLDIDVLVRDS-LTPLWDTDLGDNWLGASI  129 (282)
T ss_dssp             TCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSC-CHHHHTCCCTTCSEEEEE
T ss_pred             ccCHHHHHHHHHhhhCCccceEEEecCCEEEecc-hHHHHhcccccceeeeeh
Confidence             011 1111111111 145779999999998776 566654322344444443

>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase
species: Haemophilus influenzae [TaxId: 727]

Probab=84.17  E-value=5.4  Score=28.27  Aligned_cols=100  Identities=14%  Similarity=0.162  Sum_probs=57.0

Q ss_pred             eEEEEEEeCCC-------------chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEE
Q psy1766          17 TSVIICFYNEH-------------PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYR   83 (214)
Q Consensus        17 vSVIIp~~n~~-------------~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~   83 (214)
                      +.+|||++...             .+.+..+++.+.+.. -   .+|||+-|...    .    ...+.++ +..+...+
T Consensus         2 ~~~iIpAR~gSkRlp~Knl~~i~GkpLI~~~i~~a~~s~-i---~~IiVsTd~~~----i----~~~~~~~-~~~~~~~~   68 (255)
T d1vica_           2 FTVIIPARFASSRLPGKPLADIKGKPMIQHVFEKALQSG-A---SRVIIATDNEN----V----ADVAKSF-GAEVCMTS   68 (255)
T ss_dssp             CEEEEECCCCCSSSTTGGGCEETTEEHHHHHHHHHHHTT-C---SEEEEEESCHH----H----HHHHHHT-TCEEEECC
T ss_pred             EEEEEecCCCCCCCCCchhhhhCCcCHHHHHHHHHHHCC-C---CeEEEEcCCcc----c----chhhhhh-ccccceee
Confidence            45667776543             146777888776643 2   38888755332    2    3333333 33444444


Q ss_pred             cCCCcchHHHHHhhhhhc--CCCEEEEEcCCCcc-CcCchHHHHHHHhc
Q psy1766          84 TSKREGLIRARMFGAKYA--TGKVLVFLDSHIEV-NTHWLEPLLVPIAE  129 (214)
Q Consensus        84 ~~~~~G~~~a~n~g~~~a--~gd~i~~lD~D~~~-~~~~l~~l~~~~~~  129 (214)
                      .....|...+........  ..++++.+.+|..+ ++..+..++.....
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~d~p~~~~~~i~~~i~~~~~  117 (255)
T d1vica_          69 VNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAK  117 (255)
T ss_dssp             CSSCCHHHHHHHHHHHTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHH
T ss_pred             eccCCcchhhHHHHHHhhccCCceEEEEecchhhhhhhhhhhhhhhccc
Confidence            333334433333332222  56899999999876 56778888877654

>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: TTHA0179-like
domain: Uncharacterized protein TTHA0179
species: Thermus thermophilus [TaxId: 274]

Probab=82.32  E-value=1.7  Score=30.83  Aligned_cols=80  Identities=10%  Similarity=0.031  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcCCCEEEE
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVF  108 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~  108 (214)
                      ..|..+++.+.+...    .+|||+.+...  .               ..+.... ....|...+...|++... +.+++
T Consensus        33 pli~~~~~~l~~~~~----~~vvv~~~~~~--~---------------~~~~~~~-~~~~~~~~~v~~al~~~~-~~~lv   89 (231)
T d2dpwa1          33 PMVEWVLEALYAAGL----SPVYVGENPGL--V---------------PAPALTL-PDRGGLLENLEQALEHVE-GRVLV   89 (231)
T ss_dssp             ETHHHHHHHHHHTTC----EEEEESCCSSC--S---------------SCCSEEE-CCCSSHHHHHHHHHHTCC-SEEEE
T ss_pred             eHHHHHHHHHHhcCC----CeEEeeeeccc--c---------------ceeeeec-ccchHHHHHHHHHHHhhc-CceEE
Confidence            577788887765432    25555443322  1               1111222 446688888888888876 57778


Q ss_pred             EcCCCc-cCcCchHHHHHHHhcCC
Q psy1766         109 LDSHIE-VNTHWLEPLLVPIAERT  131 (214)
Q Consensus       109 lD~D~~-~~~~~l~~l~~~~~~~~  131 (214)
                      +.+|.. ++++.++.+++.+.+..
T Consensus        90 ~~~D~P~i~~~~i~~l~~~~~~~~  113 (231)
T d2dpwa1          90 ATGDIPHLTEEAVRFVLDKAPEAA  113 (231)
T ss_dssp             EETTCTTCCHHHHHHHHHHCCSCS
T ss_pred             eeCCCccCCHHHHHHHHHHhhhcC
Confidence            999985 58999999998875543

>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Cytidylytransferase
domain: CMP acylneuraminate synthetase
species: Neisseria meningitidis [TaxId: 487]

Probab=81.85  E-value=4.3  Score=28.11  Aligned_cols=89  Identities=12%  Similarity=0.152  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-----CCcchHHHHHhhhhh--c
Q psy1766          29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-----KREGLIRARMFGAKY--A  101 (214)
Q Consensus        29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-----~~~G~~~a~n~g~~~--a  101 (214)
                      ..+..+|+.+.+...-+   +|+|..|..    ...+++    ..+   ++.++...     ...+.......+++.  .
T Consensus        30 pLi~~~i~~~~~s~~~~---~Iiv~td~~----~i~~i~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (225)
T d1eyra_          30 SLLGHTINAAISSKCFD---RIIVSTDGG----LIAEEA----KNF---GVEVVLRPAELASDTASSISGVIHALETIGS   95 (225)
T ss_dssp             EHHHHHHHHHHHHTCCS---EEEEEESCH----HHHHHH----HHT---TCEEEECCHHHHSTTCCHHHHHHHHHHHHTC
T ss_pred             EHHHHHHHHHHHcCCCc---eEEEeeccc----hhhhhh----hhh---cceeeeeccccccccccchhhcccccccccc
Confidence            56778888888777655   888876632    344444    333   23333322     122233334444443  3


Q ss_pred             CCCEEEEEcCCCcc-CcCchHHHHHHHhcCC
Q psy1766         102 TGKVLVFLDSHIEV-NTHWLEPLLVPIAERT  131 (214)
Q Consensus       102 ~gd~i~~lD~D~~~-~~~~l~~l~~~~~~~~  131 (214)
                      ..++|+.+.+|..+ ++..+.+++..+.+..
T Consensus        96 ~~d~ii~~~~~~P~~~~~~I~~~i~~~~~~~  126 (225)
T d1eyra_          96 NSGTVTLLQPTSPLRTGAHIREAFSLFDEKI  126 (225)
T ss_dssp             CSEEEEECCTTCTTCCHHHHHHHHTTCCTTT
T ss_pred             ccceEEEeeccccccccccccccceeecccc
Confidence            56999999999986 7888999999886544

>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=80.56  E-value=4.7  Score=28.20  Aligned_cols=96  Identities=17%  Similarity=0.135  Sum_probs=60.1

Q ss_pred             CCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcC--
Q psy1766          25 NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYAT--  102 (214)
Q Consensus        25 n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~--  102 (214)
                      +.. .-|..+|+.+.++..    .+++||-....      .....+.    ...+.+.......|...+...+.....  
T Consensus        27 ~Gk-pli~~~l~~l~~~~~----~~iivv~~~~~------~~~~~~~----~~~~~~~~~~~~~g~~~~~~~a~~~l~~~   91 (250)
T d1g97a2          27 AGI-SMLEHVFRSVGAIQP----EKTVTVVGHKA------ELVEEVL----AGQTEFVTQSEQLGTGHAVMMTEPILEGL   91 (250)
T ss_dssp             TTE-EHHHHHHHHHGGGCC----SEEEEEECTTH------HHHHHHT----TTTSEEEECSSCCCHHHHHHTTHHHHTTC
T ss_pred             CCe-eHHHHHHHHHHHcCC----CeEEEeccccc------chhhhhc----cccccccccccccccchHHHHHHHhhhcc
Confidence            444 688888888877643    26666654321      1222222    235555555667788888777766543  


Q ss_pred             -CCEEEEEcCCCccCcCchHHHHHHHhcCCCEEE
Q psy1766         103 -GKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVT  135 (214)
Q Consensus       103 -gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv  135 (214)
                       .+.++++++|..+.+.-++.+++........++
T Consensus        92 ~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~~~~  125 (250)
T d1g97a2          92 SGHTLVIAGDTPLITGESLKNLIDFHINHKNVAT  125 (250)
T ss_dssp             CSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEE
T ss_pred             cCcceEEecCCCccCHHHHHHHHHHHhhhccccc
Confidence             355666667777899999999987755444433