Psyllid ID: psy17671

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MSYSKFTFQSCPPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQELAAIIYVSIKSNREFICVFVDITALLSDFFAINFHLSRIFLHWQCRHWSLLD
Secondary Structure (PSIPRED)
ccccccccccccccccccHHcccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccHHHHHcccccccccEEEEEEEcccccccccccccccEEEEcccccEEEEEEEEccccccccEEEEccccccccccccEEEEEcccccccEEEEEccccccccccccccccccccccEEEEEEEccccccEEEEEEEccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccccHHHHHHHcccHHHHHHccccccccEEEEEEEcccccccccccEEEEEEEcccccEEEEEEEcccccHHHHHHccccccccEEEEEEEcccccccccccEEEEEEEcccccEEEEEEEEEEEccccEEEEEEccHHHHccccccccEEEEEcccccEEEEEcccEcHHHcccccccccccccHHHHEEEEccccccccEEEEEccccccccccccccccccccccccccccccHcc
Coil and Loop (DISEMBL)
msyskftfqscppiemqgevvgnlerfvlepaaqkvsykcritrdrkgvdrglyptYFLHLErdygkkpiemqgevvgnlerfvlepaaqkvsykcritrdrkgvdrglyptYFLHLERDYGKKIFLLAGrkrkksttsnylistdptdlsrkgesfVGKLRsnllgtqftvydngssrrrvnifdrdEQVKVRQELAAIIYVSIKSNREFICVFVDITALLSDFFAINFHLSRIFLHWQCRHWSLLD
Flexible Loop (DISEMBL)
msyskftfqscppiemQGEVVGNLERFVLEpaaqkvsykcritrdrkgvdrglyPTYFLHLERDYGKKPIEMQGEVVGNLERFvlepaaqkvsykcritrdrkgvdrgLYPTYFLHLERDYGKKIFLlagrkrkksttsnylistdptdlsrkgESFVGklrsnllgtqftvydngssrrrvnifdrdeqvkVRQELAAIIYVSIKSNREFICVFVDITALLSDFFAINFHLSRIFLHWQCRHWSLLD
Low Complexity Region (SEG)
MSYSKFTFQSCPPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQELAAIIYVSIKSNREFICVFVDITALLSDFFAINFHLSRIFLHWQCRHWSLLD
Disordered region (IsUnstruct)
*******FQSCPPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGR*********YL**************FVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQELAAIIYVSIKSNREFICVFVDITALLSDFFAINFHLSRIFLHWQCRHWSL**
Disordered Region (DISOPRED)
**************************************************************************EVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDN**********************AAIIYVSIKSNREFICVFVDIT*****************************
Disordered Region (DISEMBL)
********QSCPPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQELAAIIYVSIKSNREFICVFVDITALLSDFFAINFHLSRIFLHWQCRHWSLLD
Disordered Region (DISPRO)
*SYSKFTFQSCPPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRV*IFDR**QVKVRQELAAIIYVSIKSNREFICVFVDITALLS*************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSYSKFTFQSCPPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQELAAIIYVSIKSNREFICVFVDITALLSDFFAINFHLSRIFLHWQCRHWSLLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
B4MKC7	451	Protein king tubby OS=Dro	N/A	N/A	0.564	0.310	0.562	2e-44
B3NJY0	448	Protein king tubby OS=Dro	N/A	N/A	0.495	0.274	0.621	1e-43
B4I7J9	443	Protein king tubby OS=Dro	N/A	N/A	0.495	0.277	0.621	1e-43
P50607	506	Tubby protein homolog OS=	yes	N/A	0.532	0.260	0.617	1e-43
Q86PC9	460	Protein king tubby OS=Dro	yes	N/A	0.495	0.267	0.621	1e-43
B4QFM2	443	Protein king tubby OS=Dro	N/A	N/A	0.495	0.277	0.621	1e-43
B4P9H8	443	Protein king tubby OS=Dro	N/A	N/A	0.495	0.277	0.621	1e-43
B3MDU3	449	Protein king tubby OS=Dro	N/A	N/A	0.495	0.273	0.621	1e-43
B4H4X0	459	Protein king tubby OS=Dro	N/A	N/A	0.564	0.305	0.555	2e-43
Q28X18	446	Protein king tubby OS=Dro	yes	N/A	0.564	0.313	0.555	2e-43

>sp|B4MKC7|TULP_DROWI Protein king tubby OS=Drosophila willistoni GN=king-tubby PE=3 SV=1

 Score =  179 bits (453), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 86/153 (56%), Positives = 109/153 (71%), Gaps = 13/153 (8%)

Query: 71  EMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAG 130
           E +G+V+GN+++FV++PA Q V YKCRITRDRKG+DRGL+P Y+LHLERDYGKKIFLL G
Sbjct: 194 ESEGDVIGNIDQFVMQPAPQGVLYKCRITRDRKGMDRGLFPIYYLHLERDYGKKIFLLGG 253

Query: 131 RKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQ 190
           RKRKKS TSNY++S DPTDLSR+ + F GKLRSN+ GT FTV+DNG         ++D  
Sbjct: 254 RKRKKSKTSNYIVSCDPTDLSRQADGFCGKLRSNVFGTSFTVFDNG---------NKDST 304

Query: 191 VKVRQELAAIIY----VSIKSNREFICVFVDIT 219
              R +LA IIY    +  K  R    +   +T
Sbjct: 305 ESPRLDLAVIIYDTNILGFKGPRNMTVILPGMT 337

Drosophila willistoni (taxid: 7260)

>sp|B3NJY0|TULP_DROER Protein king tubby OS=Drosophila erecta GN=king-tubby PE=3 SV=1

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/132 (62%), Positives = 102/132 (77%), Gaps = 9/132 (6%)

Query: 71  EMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAG 130
           E +G+V+GN+++FV++PA Q V YKCRITRDRKG+DRGL+P Y+LHLERDYGKKIFLL G
Sbjct: 191 ESEGDVIGNIDQFVMQPAPQGVLYKCRITRDRKGMDRGLFPIYYLHLERDYGKKIFLLGG 250

Query: 131 RKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQ 190
           RKRKKS TSNY++S DPTDLSR  + F GKLRSN+ GT FTV+DNG         +++  
Sbjct: 251 RKRKKSKTSNYIVSCDPTDLSRNADGFCGKLRSNVFGTSFTVFDNG---------NKEST 301

Query: 191 VKVRQELAAIIY 202
              R +LA IIY
Sbjct: 302 ESPRLDLAVIIY 313

Drosophila erecta (taxid: 7220)

>sp|B4I7J9|TULP_DROSE Protein king tubby OS=Drosophila sechellia GN=king-tubby PE=3 SV=1

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/132 (62%), Positives = 102/132 (77%), Gaps = 9/132 (6%)

Query: 71  EMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAG 130
           E +G+V+GN+++FV++PA Q V YKCRITRDRKG+DRGL+P Y+LHLERDYGKKIFLL G
Sbjct: 186 ESEGDVIGNIDQFVMQPAPQGVLYKCRITRDRKGMDRGLFPIYYLHLERDYGKKIFLLGG 245

Query: 131 RKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQ 190
           RKRKKS TSNY++S DPTDLSR  + F GKLRSN+ GT FTV+DNG         +++  
Sbjct: 246 RKRKKSKTSNYIVSCDPTDLSRNADGFCGKLRSNVFGTSFTVFDNG---------NKEST 296

Query: 191 VKVRQELAAIIY 202
              R +LA IIY
Sbjct: 297 ESPRLDLAVIIY 308

Drosophila sechellia (taxid: 7238)

>sp|P50607|TUB_HUMAN Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 SV=1

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/136 (61%), Positives = 110/136 (80%), Gaps = 4/136 (2%)

Query: 67  KKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIF 126
           ++P++++   V +LE F L PA Q ++ KCRITRD+KG+DRG+YPTYFLHL+R+ GKK+F
Sbjct: 241 EQPVDVE---VQDLEEFALRPAPQGITIKCRITRDKKGMDRGMYPTYFLHLDREDGKKVF 297

Query: 127 LLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFD 186
           LLAGRKRKKS TSNYLIS DPTDLSR G+S++GKLRSNL+GT+FTVYDNG + ++ +   
Sbjct: 298 LLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSST 357

Query: 187 RDEQVKVRQELAAIIY 202
             E   +RQELAA+ Y
Sbjct: 358 L-ESGTLRQELAAVCY 372

Functions in signal transduction from heterotrimeric G protein-coupled receptors. Binds to membranes containing phosphatidylinositol 4,5-bisphosphate. Can bind DNA (in vitro). May contribute to the regulation of transcription in the nucleus. Could be involved in the hypothalamic regulation of body weight (By similarity). Contribute to stimulation of phagocytosis of apoptotic retinal pigment epithelium (RPE) cells and macrophages.

Homo sapiens (taxid: 9606)

>sp|Q86PC9|TULP_DROME Protein king tubby OS=Drosophila melanogaster GN=king-tubby PE=1 SV=1

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/132 (62%), Positives = 102/132 (77%), Gaps = 9/132 (6%)

Query: 71  EMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAG 130
           E +G+V+GN+++FV++PA Q V YKCRITRDRKG+DRGL+P Y+LHLERDYGKKIFLL G
Sbjct: 203 ESEGDVIGNIDQFVMQPAPQGVLYKCRITRDRKGMDRGLFPIYYLHLERDYGKKIFLLGG 262

Query: 131 RKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQ 190
           RKRKKS TSNY++S DPTDLSR  + F GKLRSN+ GT FTV+DNG         +++  
Sbjct: 263 RKRKKSKTSNYIVSCDPTDLSRNADGFCGKLRSNVFGTSFTVFDNG---------NKEST 313

Query: 191 VKVRQELAAIIY 202
              R +LA IIY
Sbjct: 314 ESPRLDLAVIIY 325

Drosophila melanogaster (taxid: 7227)

>sp|B4QFM2|TULP_DROSI Protein king tubby OS=Drosophila simulans GN=king-tubby PE=3 SV=1

 Score =  176 bits (447), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/132 (62%), Positives = 102/132 (77%), Gaps = 9/132 (6%)

Query: 71  EMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAG 130
           E +G+V+GN+++FV++PA Q V YKCRITRDRKG+DRGL+P Y+LHLERDYGKKIFLL G
Sbjct: 186 ESEGDVIGNIDQFVMQPAPQGVLYKCRITRDRKGMDRGLFPIYYLHLERDYGKKIFLLGG 245

Query: 131 RKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQ 190
           RKRKKS TSNY++S DPTDLSR  + F GKLRSN+ GT FTV+DNG         +++  
Sbjct: 246 RKRKKSKTSNYIVSCDPTDLSRNADGFCGKLRSNVFGTSFTVFDNG---------NKEST 296

Query: 191 VKVRQELAAIIY 202
              R +LA IIY
Sbjct: 297 ESPRLDLAVIIY 308

Drosophila simulans (taxid: 7240)

>sp|B4P9H8|TULP_DROYA Protein king tubby OS=Drosophila yakuba GN=king-tubby PE=3 SV=1

 Score =  176 bits (446), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/132 (62%), Positives = 102/132 (77%), Gaps = 9/132 (6%)

Query: 71  EMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAG 130
           E +G+V+GN+++FV++PA Q V YKCRITRDRKG+DRGL+P Y+LHLERDYGKKIFLL G
Sbjct: 186 ESEGDVIGNIDQFVMQPAPQGVLYKCRITRDRKGMDRGLFPIYYLHLERDYGKKIFLLGG 245

Query: 131 RKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQ 190
           RKRKKS TSNY++S DPTDLSR  + F GKLRSN+ GT FTV+DNG         +++  
Sbjct: 246 RKRKKSKTSNYIVSCDPTDLSRNADGFCGKLRSNVFGTSFTVFDNG---------NKEST 296

Query: 191 VKVRQELAAIIY 202
              R +LA IIY
Sbjct: 297 ESPRLDLAVIIY 308

Drosophila yakuba (taxid: 7245)

>sp|B3MDU3|TULP_DROAN Protein king tubby OS=Drosophila ananassae GN=king-tubby PE=3 SV=1

 Score =  176 bits (446), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/132 (62%), Positives = 102/132 (77%), Gaps = 9/132 (6%)

Query: 71  EMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAG 130
           E +G+V+GN+++FV++PA Q V YKCRITRDRKG+DRGL+P Y+LHLERDYGKKIFLL G
Sbjct: 192 ESEGDVIGNIDQFVMQPAPQGVLYKCRITRDRKGMDRGLFPIYYLHLERDYGKKIFLLGG 251

Query: 131 RKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQ 190
           RKRKKS TSNY++S DPTDLSR  + F GKLRSN+ GT FTV+DNG         +++  
Sbjct: 252 RKRKKSKTSNYIVSCDPTDLSRNADGFCGKLRSNVFGTSFTVFDNG---------NKEST 302

Query: 191 VKVRQELAAIIY 202
              R +LA IIY
Sbjct: 303 ESPRLDLAVIIY 314

Drosophila ananassae (taxid: 7217)

>sp|B4H4X0|TULP_DROPE Protein king tubby OS=Drosophila persimilis GN=king-tubby PE=3 SV=1

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/153 (55%), Positives = 108/153 (70%), Gaps = 13/153 (8%)

Query: 71  EMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAG 130
           E +G+V+GN+++FV++PA Q V YKCRITRDRKG+DRGL+P Y+LHLERDYGKKIFLL G
Sbjct: 202 ESEGDVIGNIDQFVMQPAPQGVLYKCRITRDRKGMDRGLFPIYYLHLERDYGKKIFLLGG 261

Query: 131 RKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQ 190
           RKRKKS TSNY++S DPTDLSR  + F GKLRSN+ GT FTV+D+G         ++D  
Sbjct: 262 RKRKKSKTSNYIVSCDPTDLSRSADGFCGKLRSNVFGTSFTVFDSG---------NKDST 312

Query: 191 VKVRQELAAIIY----VSIKSNREFICVFVDIT 219
              R +LA IIY    +  K  R    +   +T
Sbjct: 313 DSPRLDLAVIIYDTNILGFKGPRNMTVILPGMT 345

Drosophila persimilis (taxid: 7234)

>sp|Q28X18|TULP_DROPS Protein king tubby OS=Drosophila pseudoobscura pseudoobscura GN=king-tubby PE=3 SV=2

 Score =  176 bits (445), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/153 (55%), Positives = 108/153 (70%), Gaps = 13/153 (8%)

Query: 71  EMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAG 130
           E +G+V+GN+++FV++PA Q V YKCRITRDRKG+DRGL+P Y+LHLERDYGKKIFLL G
Sbjct: 189 ESEGDVIGNIDQFVMQPAPQGVLYKCRITRDRKGMDRGLFPIYYLHLERDYGKKIFLLGG 248

Query: 131 RKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQ 190
           RKRKKS TSNY++S DPTDLSR  + F GKLRSN+ GT FTV+D+G         ++D  
Sbjct: 249 RKRKKSKTSNYIVSCDPTDLSRSADGFCGKLRSNVFGTSFTVFDSG---------NKDST 299

Query: 191 VKVRQELAAIIY----VSIKSNREFICVFVDIT 219
              R +LA IIY    +  K  R    +   +T
Sbjct: 300 DSPRLDLAVIIYDTNILGFKGPRNMTVILPGMT 332

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
340715304	415	PREDICTED: protein king tubby-like [Bomb	0.637	0.380	0.646	4e-53
332022833	383	Tubby protein-like protein [Acromyrmex e	0.560	0.362	0.732	7e-53
66535389	415	PREDICTED: protein king tubby-like [Apis	0.637	0.380	0.646	1e-52
350397500	415	PREDICTED: protein king tubby-like [Bomb	0.637	0.380	0.646	1e-52
307179459	555	Tubby protein-like protein [Camponotus f	0.564	0.252	0.725	1e-52
380019882	426	PREDICTED: LOW QUALITY PROTEIN: protein	0.637	0.370	0.646	2e-52
307214977	415	Tubby protein-like protein [Harpegnathos	0.564	0.337	0.725	2e-52
383855528	415	PREDICTED: protein king tubby-like [Mega	0.637	0.380	0.646	2e-52
270005704	400	hypothetical protein TcasGA2_TC007804 [T	0.520	0.322	0.765	4e-52
189236115	397	PREDICTED: similar to king tubby CG9398-	0.520	0.324	0.765	5e-52

>gi|340715304|ref|XP_003396156.1| PREDICTED: protein king tubby-like [Bombus terrestris]

 Score =  213 bits (543), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 106/164 (64%), Positives = 127/164 (77%), Gaps = 6/164 (3%)

Query: 61  LERDYGKKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERD 120
           + R+      E++G V GN+E FVL+PA +K+ YKCRITRDRKG+DRGLYPTYFLHLERD
Sbjct: 142 ISRENNSSSPELEGNVEGNIEHFVLQPANKKMHYKCRITRDRKGMDRGLYPTYFLHLERD 201

Query: 121 YGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRR 180
           YGKKIFLLAGRKRKKSTTSNYLISTDPTDLSR GES++GKLRSNLLGTQFT+YDNG S  
Sbjct: 202 YGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRTGESYIGKLRSNLLGTQFTIYDNGYSLM 261

Query: 181 RVNIFDRDEQVKVRQELAAIIY----VSIKSNREFICVFVDITA 220
           + N   RD++   RQELAA+IY    +  K  R+   +   +T+
Sbjct: 262 KDN--KRDDRFNPRQELAAVIYDTNVLGFKGPRKMTVIIPGMTS 303

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022833|gb|EGI63106.1| Tubby protein-like protein [Acromyrmex echinatior]

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 104/142 (73%), Positives = 120/142 (84%), Gaps = 3/142 (2%)

Query: 61  LERDYGKKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERD 120
           + RD    P E++G V GN+E+FVL+PA +K+ YKCRITRDRKG+DRGLYPTYFLHLERD
Sbjct: 111 ISRDNSSSP-ELEGNVEGNIEQFVLQPANKKMHYKCRITRDRKGMDRGLYPTYFLHLERD 169

Query: 121 YGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRR 180
           YGKKIFLLAGRKRKKS TSNYLISTDPTDLSR GES+VGKLRSNLLGTQFT+YDNG S  
Sbjct: 170 YGKKIFLLAGRKRKKSATSNYLISTDPTDLSRGGESYVGKLRSNLLGTQFTIYDNGYSLM 229

Query: 181 RVNIFDRDEQVKVRQELAAIIY 202
           + +   RDE+   RQELAA++Y
Sbjct: 230 KDD--KRDERFNPRQELAAVVY 249

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66535389|ref|XP_395938.2| PREDICTED: protein king tubby-like [Apis mellifera]

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/164 (64%), Positives = 127/164 (77%), Gaps = 6/164 (3%)

Query: 61  LERDYGKKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERD 120
           + R+      E++G V GN+E FVL+PA +K+ YKCRITRDRKG+DRGLYPTYFLHLERD
Sbjct: 142 ISRENNSSSPELEGNVEGNIEHFVLQPANKKMHYKCRITRDRKGMDRGLYPTYFLHLERD 201

Query: 121 YGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRR 180
           YGKKIFLLAGRKRKKSTTSNYLISTDPTDLSR GES++GKLRSNLLGTQFTVYDNG S  
Sbjct: 202 YGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRAGESYIGKLRSNLLGTQFTVYDNGYSLM 261

Query: 181 RVNIFDRDEQVKVRQELAAIIY----VSIKSNREFICVFVDITA 220
           + +   RD++   RQELAA+IY    +  K  R+   +   +T+
Sbjct: 262 KDD--KRDDRFNPRQELAAVIYDTNVLGFKGPRKMTVIIPGMTS 303

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397500|ref|XP_003484896.1| PREDICTED: protein king tubby-like [Bombus impatiens]

 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/164 (64%), Positives = 127/164 (77%), Gaps = 6/164 (3%)

Query: 61  LERDYGKKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERD 120
           + R+      E++G V GN+E FVL+PA +K+ YKCRITRDRKG+DRGLYPTYFLHLERD
Sbjct: 142 ISRENNSSSPELEGNVEGNIEHFVLQPANKKMHYKCRITRDRKGMDRGLYPTYFLHLERD 201

Query: 121 YGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRR 180
           YGKKIFLLAGRKRKKSTTSNYLISTDPTDLSR GES++GKLRSNLLGTQFTVYDNG S  
Sbjct: 202 YGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRAGESYIGKLRSNLLGTQFTVYDNGYSLM 261

Query: 181 RVNIFDRDEQVKVRQELAAIIY----VSIKSNREFICVFVDITA 220
           + +   RD++   RQELAA+IY    +  K  R+   +   +T+
Sbjct: 262 KDD--KRDDRFNPRQELAAVIYDTNVLGFKGPRKMTVIIPGMTS 303

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179459|gb|EFN67783.1| Tubby protein-like protein [Camponotus floridanus]

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 103/142 (72%), Positives = 119/142 (83%), Gaps = 2/142 (1%)

Query: 61  LERDYGKKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERD 120
           + RD      E++G V GN+E+FVL+PA +K+ YKCRITRDRKG+DRGLYPTYFLHLERD
Sbjct: 282 INRDDNSSSPELEGNVEGNIEQFVLQPANKKMYYKCRITRDRKGMDRGLYPTYFLHLERD 341

Query: 121 YGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRR 180
           YGKKIFLLAGRKRKKS TSNYLISTDPTDLSR GES+VGKLRSNLLGTQFT+YDNG S  
Sbjct: 342 YGKKIFLLAGRKRKKSATSNYLISTDPTDLSRGGESYVGKLRSNLLGTQFTIYDNGYSLM 401

Query: 181 RVNIFDRDEQVKVRQELAAIIY 202
           + +   RDE+   RQELAA++Y
Sbjct: 402 KDD--KRDERFNPRQELAAVVY 421

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019882|ref|XP_003693830.1| PREDICTED: LOW QUALITY PROTEIN: protein king tubby-like [Apis florea]

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/164 (64%), Positives = 127/164 (77%), Gaps = 6/164 (3%)

Query: 61  LERDYGKKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERD 120
           + R+      E++G V GN+E FVL+PA +K+ YKCRITRDRKG+DRGLYPTYFLHLERD
Sbjct: 153 ISRENNSSSPELEGNVEGNIEHFVLQPANKKMHYKCRITRDRKGMDRGLYPTYFLHLERD 212

Query: 121 YGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRR 180
           YGKKIFLLAGRKRKKSTTSNYLISTDPTDLSR GES++GKLRSNLLGTQFTVYDNG S  
Sbjct: 213 YGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRAGESYIGKLRSNLLGTQFTVYDNGYSLI 272

Query: 181 RVNIFDRDEQVKVRQELAAIIY----VSIKSNREFICVFVDITA 220
           + +   RD++   RQELAA+IY    +  K  R+   +   +T+
Sbjct: 273 KDD--KRDDRFNPRQELAAVIYDTNVLGFKGPRKMTVIIPGMTS 314

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214977|gb|EFN89822.1| Tubby protein-like protein [Harpegnathos saltator]

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/142 (72%), Positives = 118/142 (83%), Gaps = 2/142 (1%)

Query: 61  LERDYGKKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERD 120
           + RD      E++G V GN+E+FVL+PA +K+ YKCRITRDRKG+DRGLYPTYFLHLERD
Sbjct: 142 INRDNNSSSPELEGNVEGNIEQFVLQPANKKMHYKCRITRDRKGMDRGLYPTYFLHLERD 201

Query: 121 YGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRR 180
           YGKKIFLLAGRKRKKS TSNYLISTDPTDLSR GES+VGKLRSNLLGTQF VYDNG S  
Sbjct: 202 YGKKIFLLAGRKRKKSATSNYLISTDPTDLSRGGESYVGKLRSNLLGTQFAVYDNGYSLM 261

Query: 181 RVNIFDRDEQVKVRQELAAIIY 202
           + +   RDE+   RQELAA++Y
Sbjct: 262 KDD--KRDERYNPRQELAAVVY 281

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855528|ref|XP_003703262.1| PREDICTED: protein king tubby-like [Megachile rotundata]

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 106/164 (64%), Positives = 127/164 (77%), Gaps = 6/164 (3%)

Query: 61  LERDYGKKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERD 120
           + R+      E++G V GN+E FVL+PA +K+ YKCRITRDRKG+DRGLYPTYFLHLERD
Sbjct: 142 INRENNSSSPELEGNVEGNIEHFVLQPANKKMHYKCRITRDRKGMDRGLYPTYFLHLERD 201

Query: 121 YGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRR 180
           YGKKIFLLAGRKRKKSTTSNYLISTDPTDLSR GES++GKLRSNLLGTQFTVYDNG S  
Sbjct: 202 YGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRAGESYIGKLRSNLLGTQFTVYDNGYSLI 261

Query: 181 RVNIFDRDEQVKVRQELAAIIY----VSIKSNREFICVFVDITA 220
           + +   RD++   RQELAA+IY    +  K  R+   +   +T+
Sbjct: 262 KDD--KRDDRFNPRQELAAVIYDTNVLGFKGPRKMTVIIPGMTS 303

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005704|gb|EFA02152.1| hypothetical protein TcasGA2_TC007804 [Tribolium castaneum]

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 101/132 (76%), Positives = 113/132 (85%), Gaps = 3/132 (2%)

Query: 71  EMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAG 130
           E++G++ GN+E+FVL+PA QKV YKCRITRDRKG+DRGLYPTY+LHLERDYGKK+FLLA 
Sbjct: 138 EIEGDIEGNVEKFVLQPAQQKVLYKCRITRDRKGMDRGLYPTYYLHLERDYGKKVFLLAA 197

Query: 131 RKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQ 190
           RKRKKS TSNYLISTDPTDLSR  ESFVGKLRSNLLGTQFTVYDNG S R+ N     E 
Sbjct: 198 RKRKKSATSNYLISTDPTDLSRSAESFVGKLRSNLLGTQFTVYDNGISPRKANF---KEG 254

Query: 191 VKVRQELAAIIY 202
           V  RQELAA+ Y
Sbjct: 255 VTPRQELAAVTY 266

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236115|ref|XP_974118.2| PREDICTED: similar to king tubby CG9398-PB [Tribolium castaneum]

 Score =  210 bits (534), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 101/132 (76%), Positives = 113/132 (85%), Gaps = 3/132 (2%)

Query: 71  EMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAG 130
           E++G++ GN+E+FVL+PA QKV YKCRITRDRKG+DRGLYPTY+LHLERDYGKK+FLLA 
Sbjct: 135 EIEGDIEGNVEKFVLQPAQQKVLYKCRITRDRKGMDRGLYPTYYLHLERDYGKKVFLLAA 194

Query: 131 RKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQ 190
           RKRKKS TSNYLISTDPTDLSR  ESFVGKLRSNLLGTQFTVYDNG S R+ N     E 
Sbjct: 195 RKRKKSATSNYLISTDPTDLSRSAESFVGKLRSNLLGTQFTVYDNGISPRKANF---KEG 251

Query: 191 VKVRQELAAIIY 202
           V  RQELAA+ Y
Sbjct: 252 VTPRQELAAVTY 263

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
UNIPROTKB|B4MKC7	451	king-tubby "Protein king tubby	0.495	0.272	0.628	3.6e-41
UNIPROTKB|E9PQR4	512	TUB "Tubby protein homolog" [H	0.532	0.257	0.617	3.6e-41
UNIPROTKB|P50607	506	TUB "Tubby protein homolog" [H	0.532	0.260	0.617	3.6e-41
MGI|MGI:2651573	505	Tub "tubby candidate gene" [Mu	0.524	0.257	0.626	5.9e-41
RGD|3918	505	Tub "tubby homolog (mouse)" [R	0.524	0.257	0.626	5.9e-41
UNIPROTKB|E1C6V6	497	TUB "Uncharacterized protein"	0.5	0.249	0.674	5.9e-41
UNIPROTKB|E1B8A6	508	TUB "Uncharacterized protein"	0.504	0.246	0.658	7.5e-41
UNIPROTKB|F1PTB4	547	TUB "Uncharacterized protein"	0.504	0.228	0.658	9.6e-41
UNIPROTKB|F1RNI1	506	TUB "Uncharacterized protein"	0.665	0.326	0.526	9.6e-41
FB|FBgn0015721	460	king-tubby "king tubby" [Droso	0.495	0.267	0.621	1.2e-40

UNIPROTKB|B4MKC7 king-tubby "Protein king tubby" [Drosophila willistoni (taxid:7260)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 83/132 (62%), Positives = 103/132 (78%)

Query:    71 EMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAG 130
             E +G+V+GN+++FV++PA Q V YKCRITRDRKG+DRGL+P Y+LHLERDYGKKIFLL G
Sbjct:   194 ESEGDVIGNIDQFVMQPAPQGVLYKCRITRDRKGMDRGLFPIYYLHLERDYGKKIFLLGG 253

Query:   131 RKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQ 190
             RKRKKS TSNY++S DPTDLSR+ + F GKLRSN+ GT FTV+DNG+         +D  
Sbjct:   254 RKRKKSKTSNYIVSCDPTDLSRQADGFCGKLRSNVFGTSFTVFDNGN---------KDST 304

Query:   191 VKVRQELAAIIY 202
                R +LA IIY
Sbjct:   305 ESPRLDLAVIIY 316

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

UNIPROTKB|E9PQR4 TUB "Tubby protein homolog" [Homo sapiens (taxid:9606)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 84/136 (61%), Positives = 110/136 (80%)

Query:    67 KKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIF 126
             ++P++++   V +LE F L PA Q ++ KCRITRD+KG+DRG+YPTYFLHL+R+ GKK+F
Sbjct:   247 EQPVDVE---VQDLEEFALRPAPQGITIKCRITRDKKGMDRGMYPTYFLHLDREDGKKVF 303

Query:   127 LLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFD 186
             LLAGRKRKKS TSNYLIS DPTDLSR G+S++GKLRSNL+GT+FTVYDNG + ++ +   
Sbjct:   304 LLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSST 363

Query:   187 RDEQVKVRQELAAIIY 202
               E   +RQELAA+ Y
Sbjct:   364 L-ESGTLRQELAAVCY 378

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|P50607 TUB "Tubby protein homolog" [Homo sapiens (taxid:9606)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 84/136 (61%), Positives = 110/136 (80%)

Query:    67 KKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIF 126
             ++P++++   V +LE F L PA Q ++ KCRITRD+KG+DRG+YPTYFLHL+R+ GKK+F
Sbjct:   241 EQPVDVE---VQDLEEFALRPAPQGITIKCRITRDKKGMDRGMYPTYFLHLDREDGKKVF 297

Query:   127 LLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFD 186
             LLAGRKRKKS TSNYLIS DPTDLSR G+S++GKLRSNL+GT+FTVYDNG + ++ +   
Sbjct:   298 LLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSST 357

Query:   187 RDEQVKVRQELAAIIY 202
               E   +RQELAA+ Y
Sbjct:   358 L-ESGTLRQELAAVCY 372

GO:0006909 "phagocytosis" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0007602 "phototransduction" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IEA

GO:0009725 "response to hormone stimulus" evidence=IEA

GO:0044259 "multicellular organismal macromolecule metabolic process" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0050766 "positive regulation of phagocytosis" evidence=IDA

GO:0005737 "cytoplasm" evidence=TAS

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

MGI|MGI:2651573 Tub "tubby candidate gene" [Mus musculus (taxid:10090)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 84/134 (62%), Positives = 108/134 (80%)

Query:    69 PIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLL 128
             P++++   V +LE F L PA Q ++ KCRITRD+KG+DRG+YPTYFLHL+R+ GKK+FLL
Sbjct:   242 PVDIE---VQDLEEFALRPAPQGITIKCRITRDKKGMDRGMYPTYFLHLDREDGKKVFLL 298

Query:   129 AGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRD 188
             AGRKRKKS TSNYLIS DPTDLSR G+S++GKLRSNL+GT+FTVYDNG + ++ +     
Sbjct:   299 AGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTL- 357

Query:   189 EQVKVRQELAAIIY 202
             E   +RQELAA+ Y
Sbjct:   358 ESGTLRQELAAVCY 371

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IMP

GO:0005886 "plasma membrane" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IMP

GO:0007602 "phototransduction" evidence=IMP

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IMP

GO:0009584 "detection of visible light" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0044259 "multicellular organismal macromolecule metabolic process" evidence=IMP

GO:0050766 "positive regulation of phagocytosis" evidence=ISO

GO:0050896 "response to stimulus" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IMP

RGD|3918 Tub "tubby homolog (mouse)" [Rattus norvegicus (taxid:10116)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 84/134 (62%), Positives = 108/134 (80%)

Query:    69 PIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLL 128
             P++++   V +LE F L PA Q ++ KCRITRD+KG+DRG+YPTYFLHL+R+ GKK+FLL
Sbjct:   242 PVDIE---VQDLEEFALRPAPQGITIKCRITRDKKGMDRGMYPTYFLHLDREDGKKVFLL 298

Query:   129 AGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRD 188
             AGRKRKKS TSNYLIS DPTDLSR G+S++GKLRSNL+GT+FTVYDNG + ++ +     
Sbjct:   299 AGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTL- 357

Query:   189 EQVKVRQELAAIIY 202
             E   +RQELAA+ Y
Sbjct:   358 ESGTLRQELAAVCY 371

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006909 "phagocytosis" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007602 "phototransduction" evidence=IEA;ISO

GO:0007605 "sensory perception of sound" evidence=IEA;ISO

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IEA;ISO

GO:0009584 "detection of visible light" evidence=ISO

GO:0009725 "response to hormone stimulus" evidence=IEP

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0044259 "multicellular organismal macromolecule metabolic process" evidence=IEA;ISO

GO:0050766 "positive regulation of phagocytosis" evidence=ISO;ISS

GO:0060041 "retina development in camera-type eye" evidence=IEA;ISO

UNIPROTKB|E1C6V6 TUB "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 85/126 (67%), Positives = 101/126 (80%)

Query:    77 VGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKS 136
             V +LE F + PA Q  + KCRITRD+KG+DRG+YPTY+LHLER++GKK+FLLAGRKRKKS
Sbjct:   240 VDDLEEFAVRPAPQGATVKCRITRDKKGMDRGMYPTYYLHLEREHGKKVFLLAGRKRKKS 299

Query:   137 TTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQE 196
              TSNYLIS DPTDLSR GESF+GKLRSNL+GT+FTVYDNG +  +       E   +RQE
Sbjct:   300 KTSNYLISIDPTDLSRGGESFIGKLRSNLMGTKFTVYDNGVNPMKTT--SSLEASVLRQE 357

Query:   197 LAAIIY 202
             LAAI Y
Sbjct:   358 LAAICY 363

GO:0005829 "cytosol" evidence=IEA

GO:0007602 "phototransduction" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0044259 "multicellular organismal macromolecule metabolic process" evidence=IEA

GO:0050766 "positive regulation of phagocytosis" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

UNIPROTKB|E1B8A6 TUB "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 83/126 (65%), Positives = 103/126 (81%)

Query:    77 VGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKS 136
             V +LE F L PA Q ++ KCRITRD+KG+DRG+YPTYFLHL+R+ GKK+FLLAGRKRKKS
Sbjct:   250 VQDLEEFALRPAPQGITIKCRITRDKKGMDRGMYPTYFLHLDREDGKKVFLLAGRKRKKS 309

Query:   137 TTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQE 196
              TSNYLIS DPTDLSR G+S++GKLRSNL+GT+FTVYDNG + ++ +     E   +RQE
Sbjct:   310 KTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASASTL-ESGTLRQE 368

Query:   197 LAAIIY 202
             LAA+ Y
Sbjct:   369 LAAVCY 374

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0050766 "positive regulation of phagocytosis" evidence=IEA

GO:0044259 "multicellular organismal macromolecule metabolic process" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0007602 "phototransduction" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|F1PTB4 TUB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 83/126 (65%), Positives = 103/126 (81%)

Query:    77 VGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKS 136
             V +LE F L PA Q ++ KCRITRD+KG+DRG+YPTYFLHL+R+ GKK+FLLAGRKRKKS
Sbjct:   289 VQDLEEFALRPAPQGITIKCRITRDKKGMDRGMYPTYFLHLDREDGKKVFLLAGRKRKKS 348

Query:   137 TTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQE 196
              TSNYLIS DPTDLSR G+S++GKLRSNL+GT+FTVYDNG + ++ +     E   +RQE
Sbjct:   349 KTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTL-ESGTLRQE 407

Query:   197 LAAIIY 202
             LAA+ Y
Sbjct:   408 LAAVCY 413

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0050766 "positive regulation of phagocytosis" evidence=IEA

GO:0044259 "multicellular organismal macromolecule metabolic process" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0007602 "phototransduction" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|F1RNI1 TUB "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 91/173 (52%), Positives = 120/173 (69%)

Query:    77 VGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKS 136
             V +LE F L PA Q ++ KCRITRD+KG+DRG+YPTYFLHL+R+ GKK+FLLAGRKRKKS
Sbjct:   248 VQDLEEFALRPAPQGITVKCRITRDKKGMDRGMYPTYFLHLDREDGKKVFLLAGRKRKKS 307

Query:   137 TTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQE 196
              TSNYLIS DPTDLSR G+S++GKLRSNL+GT+FTVYDNG + ++       E   +RQE
Sbjct:   308 KTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKATS-SALESGPLRQE 366

Query:   197 LAAIIY----VSIKSNREFICVFVDITALLSDFFAINFHLSR--IFLHWQCRH 243
             LAA+ Y    +  K  R+   V   +T ++ +  +I     R  +   WQ ++
Sbjct:   367 LAAVCYETNVLGFKGPRKMSVVVPGMT-MVHERLSIRPRNERETLLARWQSKN 418

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0050766 "positive regulation of phagocytosis" evidence=IEA

GO:0044259 "multicellular organismal macromolecule metabolic process" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0007602 "phototransduction" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

FB|FBgn0015721 king-tubby "king tubby" [Drosophila melanogaster (taxid:7227)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 82/132 (62%), Positives = 102/132 (77%)

Query:    71 EMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAG 130
             E +G+V+GN+++FV++PA Q V YKCRITRDRKG+DRGL+P Y+LHLERDYGKKIFLL G
Sbjct:   203 ESEGDVIGNIDQFVMQPAPQGVLYKCRITRDRKGMDRGLFPIYYLHLERDYGKKIFLLGG 262

Query:   131 RKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQ 190
             RKRKKS TSNY++S DPTDLSR  + F GKLRSN+ GT FTV+DNG+         ++  
Sbjct:   263 RKRKKSKTSNYIVSCDPTDLSRNADGFCGKLRSNVFGTSFTVFDNGN---------KEST 313

Query:   191 VKVRQELAAIIY 202
                R +LA IIY
Sbjct:   314 ESPRLDLAVIIY 325

GO:0007608 "sensory perception of smell" evidence=NAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q86PC9	TULP_DROME	No assigned EC number	0.6212	0.4959	0.2673	yes	N/A
P50586	TUB_MOUSE	No assigned EC number	0.6587	0.5040	0.2475	yes	N/A
O88808	TUB_RAT	No assigned EC number	0.6587	0.5040	0.2475	yes	N/A
Q28X18	TULP_DROPS	No assigned EC number	0.5555	0.5645	0.3139	yes	N/A
P50607	TUB_HUMAN	No assigned EC number	0.6176	0.5322	0.2608	yes	N/A
Q7PZK5	TULP_ANOGA	No assigned EC number	0.6060	0.4959	0.2751	yes	N/A
Q09306	TUB1_CAEEL	No assigned EC number	0.5692	0.4919	0.2863	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	248
pfam01167	243	pfam01167, Tub, Tub family	5e-55

>gnl|CDD|216339 pfam01167, Tub, Tub family

 Score =  176 bits (448), Expect = 5e-55
 Identities = 72/119 (60%), Positives = 90/119 (75%), Gaps = 7/119 (5%)

Query: 87  PAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTTSNYLISTD 146
           PA +  + +CRITRD+ G+D GL+PTY+LHLER+ GKK FLLA RKRK+S TSNYLIS D
Sbjct: 1   PAPRGGTVQCRITRDKSGMDYGLFPTYYLHLERENGKKKFLLAARKRKRSKTSNYLISLD 60

Query: 147 PTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKV---RQELAAIIY 202
           PTDLSR G+ ++GKLRSN LGT+FTV+DNG + ++     R    KV   RQELAA+ Y
Sbjct: 61  PTDLSRSGDGYIGKLRSNFLGTKFTVFDNGVNPQK----ARLVTPKVASGRQELAAVCY 115

Length = 243

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
KOG2502|consensus	355		100.0
PF01167	246	Tub: Tub family; InterPro: IPR000007 Tubby, an aut	100.0
KOG2502|consensus	355		98.86
PF01167	246	Tub: Tub family; InterPro: IPR000007 Tubby, an aut	98.15

>KOG2502|consensus

Probab=100.00  E-value=4.9e-53  Score=392.57  Aligned_cols=176  Identities=42%  Similarity=0.607  Sum_probs=161.9

Q ss_pred             cccccccCCCccccccccccchhhhhcccCCCceeEEEEEEEcCCCCCCCCcceeeeeeeecCCceEEEEeeeeccCCCC
Q psy17671         59 LHLERDYGKKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTT  138 (248)
Q Consensus        59 l~le~~~~~kvfeLq~~i~~~l~~fl~~P~P~~~~vqC~I~R~k~g~~~gl~PtY~LyLe~~~gk~~fLLAARKrk~s~t  138 (248)
                      |.....+.+++.+..+.++  ++.||+||+|+|.++||+|+|||+|+++||||.|++||+.+++ ++|||||||+|++||
T Consensus        83 ~r~~~~~~v~~~~~~~k~~--~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~-~kfLLaark~rr~~~  159 (355)
T KOG2502|consen   83 WREISKEIVAPPEPSSKLT--FPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDN-KKFLLAARKRRRSKT  159 (355)
T ss_pred             hhhhccccccCCccccccc--hhHHhcCCCCCCceEEEEEEEccCCCceeeeeccccccccccc-ceeeeeeeeeccccc
Confidence            5555678888898888887  9999999999999999999999999999999999999997554 469999999999999


Q ss_pred             eeEEEEcCCCCCCCcccceeeeeeccccccEEEEecCCCCCccCCccccccccccceeEEEEEEc----cCCCceEEEEE
Q psy17671        139 SNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQELAAIIYV----SIKSNREFICV  214 (248)
Q Consensus       139 SnYiIS~d~~dlSr~s~~yvGKLRSNflGTkFtiYD~G~~p~k~~~~~~~~~~~~R~ELg~V~Ye----g~~GPRkM~v~  214 (248)
                      +|||||+|++||||++++|||||||||+||||||||+|.+|.+...    ....+|+|||+|+||    |++|||||+|+
T Consensus       160 t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~~~r~~~----~~~~~~~~la~V~Ye~NVLg~rGPRrM~~i  235 (355)
T KOG2502|consen  160 TNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVNPSRRFN----KVPSGRQELAAVIYETNVLGFRGPRRMTVI  235 (355)
T ss_pred             ceeEEeccccccccCccceeeeeecccccceEEEecCCCCcccccc----cCCcccceeeEEEEeeccccccCCceeEEe
Confidence            9999999999999999999999999999999999999999987643    357889999999999    99999999999


Q ss_pred             eccccccc-------------------------cCceeeccccccceeeeee
Q psy17671        215 FVDITALL-------------------------SDFFAINFHLSRIFLHWQC  241 (248)
Q Consensus       215 iP~i~~~~-------------------------~d~~~l~~~~~~~~~~~~~  241 (248)
                      ||+|+.+.                         +...+|.++.|+||+++||
T Consensus       236 m~~i~~s~~~~~v~~q~~~~~~~~l~r~~~k~~e~~lvL~NK~P~wne~~q~  287 (355)
T KOG2502|consen  236 MPGISPSAPGGRVPVQPENDHPSLLFRSQNKDKEGLLVLKNKTPRWNEETQS  287 (355)
T ss_pred             ccCCCCCCCCCcccccccccccchhhhccccCcccceEeecCCCccccccce
Confidence            99999883                         4578899999999999999

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function

Probab=100.00  E-value=1.4e-47  Score=344.17  Aligned_cols=152  Identities=43%  Similarity=0.719  Sum_probs=118.4

Q ss_pred             cCCCceeEEEEEEEcCCCCCCCCcceeeeeeeecCCceEEEEeeeeccCCCCeeEEEEcCCCCCCCcccceeeeeecccc
Q psy17671         87 PAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLL  166 (248)
Q Consensus        87 P~P~~~~vqC~I~R~k~g~~~gl~PtY~LyLe~~~gk~~fLLAARKrk~s~tSnYiIS~d~~dlSr~s~~yvGKLRSNfl  166 (248)
                      |||+|++|||+|+|||+|+++++||.|+|||+.++|+  |||||||+++++||||+||+|++|+||++++|||||||||+
T Consensus         1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~k--fLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~   78 (246)
T PF01167_consen    1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGK--FLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFL   78 (246)
T ss_dssp             B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSE--EEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TT
T ss_pred             CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCc--EEEeeeecccCCCcceEEecCCCccccCCCceeeeeccccc
Confidence            8999999999999999999999999999999987775  99999999999999999999999999999999999999999


Q ss_pred             ccEEEEecCCCCCccCCccccccccccceeEEEEEEc----cCCCceEEEEEecccccccc-------------------
Q psy17671        167 GTQFTVYDNGSSRRRVNIFDRDEQVKVRQELAAIIYV----SIKSNREFICVFVDITALLS-------------------  223 (248)
Q Consensus       167 GTkFtiYD~G~~p~k~~~~~~~~~~~~R~ELg~V~Ye----g~~GPRkM~v~iP~i~~~~~-------------------  223 (248)
                      ||+|||||+|.+|++.... .......|+|||+|+|+    |++|||||+|+||+|+.+.+                   
T Consensus        79 GT~F~iyD~g~~~~~~~~~-~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~~~~p~~~~~~~~~  157 (246)
T PF01167_consen   79 GTEFTIYDNGPNPKKSKSI-SPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRVPFQPLNQEKDSLL  157 (246)
T ss_dssp             SSEEEEEESSB-CCCSTCC-TSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B-----SS-CCCSHH
T ss_pred             eeEEEEECCCCCCcccccc-CcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCccccccceeeeeecccccccccc
Confidence            9999999999999886532 23457889999999999    88999999999999865554                   


Q ss_pred             ---------Cceeeccccccceeeeee
Q psy17671        224 ---------DFFAINFHLSRIFLHWQC  241 (248)
Q Consensus       224 ---------d~~~l~~~~~~~~~~~~~  241 (248)
                               +..+|-.+.|.|.+..+|
T Consensus       158 ~~~~~~~~~~~~~l~~k~P~w~~~~~~  184 (246)
T PF01167_consen  158 SRFQNKKKDELIVLKNKPPRWNEELQS  184 (246)
T ss_dssp             HHHHCT-TTSEEEEEE---EEETTTTE
T ss_pred             ccccccCCcceEEEecCCCcEeccCCe
Confidence                     155666666888877776

This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.

>KOG2502|consensus

Probab=98.86  E-value=1.2e-09  Score=103.01  Aligned_cols=58  Identities=31%  Similarity=0.538  Sum_probs=51.9

Q ss_pred             cccccccccccccccCCCceeEEEEccCCCCcCCCcccccccccccccCCCcccccccc
Q psy17671         18 GEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKPIEMQGEV   76 (248)
Q Consensus        18 ~~~~~~~~~~v~~Pa~~g~~v~critrdk~g~dkg~~p~y~l~le~~~~~kvfeLq~~i   76 (248)
                      +..+.+++.++++|+|+|.+++|+|+||+.|||+||||+||+|++.+|+ +.|.|++.-
T Consensus        96 ~~~k~~~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~-~kfLLaark  153 (355)
T KOG2502|consen   96 PSSKLTFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDN-KKFLLAARK  153 (355)
T ss_pred             cccccchhHHhcCCCCCCceEEEEEEEccCCCceeeeeccccccccccc-ceeeeeeee
Confidence            3457789999999999999999999999999999999999999999888 777776543

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function

Probab=98.15  E-value=7.6e-07  Score=80.65  Aligned_cols=36  Identities=44%  Similarity=0.905  Sum_probs=28.1

Q ss_pred             ccCCCceeEEEEccCCCCcCCCcccccccccccccC
Q psy17671         31 PAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYG   66 (248)
Q Consensus        31 Pa~~g~~v~critrdk~g~dkg~~p~y~l~le~~~~   66 (248)
                      |+|+|..|+|+|.||+.|++++|||+|++++|.+++
T Consensus         1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~   36 (246)
T PF01167_consen    1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENG   36 (246)
T ss_dssp             B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTS
T ss_pred             CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCC
Confidence            899999999999999999999999999999996655

This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	248
1s31_A	273	Crystal Structure Analysis Of The Human Tub Protein		8e-44
1c8z_A	265	C-Terminal Domain Of Mouse Brain Tubby Protein Leng		2e-43
1i7e_A	265	C-Terminal Domain Of Mouse Brain Tubby Protein Boun		2e-43
2fim_A	276	Structure Of The C-Terminal Domain Of Human Tubby-L		1e-37
3c5n_A	246	Structure Of Human Tulp1 In Complex With Ip3 Length		2e-37

>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein (isoform A) Spanning Residues 289 Through 561 Length = 273

Iteration: 1
 Score =  173 bits (439), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 83/136 (61%), Positives = 110/136 (80%), Gaps = 4/136 (2%)
Query: 67  KKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIF 126
           ++P++++   V +LE F L PA Q ++ KCRITRD+KG+DRG++PTYFLHL+R+ GKK+F
Sbjct: 8   EQPVDVE---VQDLEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVF 64
Query: 127 LLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFD 186
           LLAGRKRKKS TSNYLIS DPTDLSR G+S++GKLRSNL+GT+FTVYDNG + ++ +   
Sbjct: 65  LLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSST 124
Query: 187 RDEQVKVRQELAAIIY 202
             E   +RQELAA+ Y
Sbjct: 125 L-ESGTLRQELAAVCY 139

>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length = 265

Iteration: 1
 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/126 (65%), Positives = 103/126 (81%), Gaps = 1/126 (0%)
Query: 77  VGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKS 136
           V +LE F L PA Q ++ KCRITRD+KG+DRG++PTYFLHL+R+ GKK+FLLAGRKRKKS
Sbjct: 7   VQDLEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKS 66
Query: 137 TTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQE 196
            TSNYLIS DPTDLSR G+S++GKLRSNL+GT+FTVYDNG + ++ +     E   +RQE
Sbjct: 67  KTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKAS-SSTLESGTLRQE 125
Query: 197 LAAIIY 202
           LAA+ Y
Sbjct: 126 LAAVCY 131

>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate Length = 265

Iteration: 1
 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/126 (65%), Positives = 103/126 (81%), Gaps = 1/126 (0%)
Query: 77  VGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKS 136
           V +LE F L PA Q ++ KCRITRD+KG+DRG++PTYFLHL+R+ GKK+FLLAGRKRKKS
Sbjct: 7   VQDLEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKS 66
Query: 137 TTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQE 196
            TSNYLIS DPTDLSR G+S++GKLRSNL+GT+FTVYDNG + ++ +     E   +RQE
Sbjct: 67  KTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKAS-SSTLESGTLRQE 125
Query: 197 LAAIIY 202
           LAA+ Y
Sbjct: 126 LAAVCY 131

>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like Protein 1 Length = 276

Iteration: 1
 Score =  152 bits (385), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/158 (53%), Positives = 106/158 (67%), Gaps = 28/158 (17%)
Query: 48  GVDRGLYPTYFLHLERDYGKKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDR 107
           GVD G    YF  +E      P E           FVL PA Q  + +CR+TRD+KG+DR
Sbjct: 10  GVDLGTENLYFQSME------PRE-----------FVLRPAPQGRTVRCRLTRDKKGMDR 52
Query: 108 GLYPTYFLHLERDYGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLG 167
           G+YP+YFLHL  D  KK+FLLAGRKRK+S T+NYLIS DPT+LSR GE+F+GKLRSNLLG
Sbjct: 53  GMYPSYFLHL--DTEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGKLRSNLLG 110
Query: 168 TQFTVYDNGSSRRR---VNIFDRDEQVKVRQELAAIIY 202
            +FTV+DNG + +R    N+        +RQELAA+IY
Sbjct: 111 NRFTVFDNGQNPQRGYSTNV------ASLRQELAAVIY 142

>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3 Length = 246

Iteration: 1
 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 76/123 (61%), Positives = 96/123 (78%), Gaps = 11/123 (8%)
Query: 83  FVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTTSNYL 142
           FVL PA Q  + +CR+TRD+KG+DRG+YP+YFLHL  D  KK+FLLAGRKRK+S T+NYL
Sbjct: 4   FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHL--DTEKKVFLLAGRKRKRSKTANYL 61
Query: 143 ISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRR---VNIFDRDEQVKVRQELAA 199
           IS DPT+LSR GE+F+GKLRSNLLG +FTV+DNG + +R    N+        +RQELAA
Sbjct: 62  ISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNV------ASLRQELAA 115
Query: 200 IIY 202
           +IY
Sbjct: 116 VIY 118

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	248
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	1e-34
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	7e-09
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	5e-34
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276

 Score =  124 bits (312), Expect = 1e-34
 Identities = 75/141 (53%), Positives = 99/141 (70%), Gaps = 9/141 (6%)

Query: 79  NLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTT 138
               FVL PA Q  + +CR+TRD+KG+DRG+YP+YFLHL+ +  KK+FLLAGRKRK+S T
Sbjct: 24  EPREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTE--KKVFLLAGRKRKRSKT 81

Query: 139 SNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQELA 198
           +NYLIS DPT+LSR GE+F+GKLRSNLLG +FTV+DNG + +R    +      +RQELA
Sbjct: 82  ANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVA---SLRQELA 138

Query: 199 AIIYVSIKSN----REFICVF 215
           A+IY +        R    + 
Sbjct: 139 AVIYETNVLGFRGPRRMTVII 159

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276

 Score = 54.0 bits (129), Expect = 7e-09
 Identities = 23/42 (54%), Positives = 32/42 (76%)

Query: 23 NLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERD 64
              FVL PA Q  + +CR+TRD+KG+DRG+YP+YFLHL+ +
Sbjct: 24 EPREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTE 65

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246

 Score =  122 bits (306), Expect = 5e-34
 Identities = 74/121 (61%), Positives = 96/121 (79%), Gaps = 5/121 (4%)

Query: 82  RFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTTSNY 141
            FVL PA Q  + +CR+TRD+KG+DRG+YP+YFLHL+ +  KK+FLLAGRKRK+S T+NY
Sbjct: 3   EFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTE--KKVFLLAGRKRKRSKTANY 60

Query: 142 LISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQELAAII 201
           LIS DPT+LSR GE+F+GKLRSNLLG +FTV+DNG + +R    +      +RQELAA+I
Sbjct: 61  LISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVA---SLRQELAAVI 117

Query: 202 Y 202
           Y
Sbjct: 118 Y 118

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246

 Score = 52.1 bits (124), Expect = 2e-08
 Identities = 23/39 (58%), Positives = 32/39 (82%)

Query: 26 RFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERD 64
           FVL PA Q  + +CR+TRD+KG+DRG+YP+YFLHL+ +
Sbjct: 3  EFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTE 41

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 32/228 (14%), Positives = 64/228 (28%), Gaps = 59/228 (25%)

Query: 39  KCRI---TRDRKGVDRGLYPTYFLHLERDYGKKPIEMQGEVVGNLERFV------LEPAA 89
            C+I   TR  K V   L      H+  D+    +    EV   L +++      L    
Sbjct: 265 SCKILLTTRF-KQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPREV 322

Query: 90  QKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTTSNYLISTDPTD 149
              +                 P     L         ++A   R    T +     +   
Sbjct: 323 LTTN-----------------P---RRLS--------IIAESIRDGLATWDNWKHVNCDK 354

Query: 150 LSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQELAAIIYVSIKSN- 208
           L+   ES +  L        F          R+++F       +   L ++I+  +  + 
Sbjct: 355 LTTIIESSLNVLEPAEYRKMF---------DRLSVFPPS--AHIPTILLSLIWFDVIKSD 403

Query: 209 -REFICVFVDITALLSDFFAINFHLSRIFLHWQCR-------HWSLLD 248
               +      + +          +  I+L  + +       H S++D
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	100.0
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	100.0
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	99.01
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	98.95

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A

Probab=100.00  E-value=7.2e-52  Score=371.12  Aligned_cols=157  Identities=48%  Similarity=0.805  Sum_probs=128.0

Q ss_pred             hhhhhcccCCCceeEEEEEEEcCCCCCCCCcceeeeeeeecCCceEEEEeeeeccCCCCeeEEEEcCCCCCCCcccceee
Q psy17671         80 LERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRKGESFVG  159 (248)
Q Consensus        80 l~~fl~~P~P~~~~vqC~I~R~k~g~~~gl~PtY~LyLe~~~gk~~fLLAARKrk~s~tSnYiIS~d~~dlSr~s~~yvG  159 (248)
                      |++||++|+|+|++|||+|+|||+|+++|+||+||||++.++  ++|||||||+++++||||+||+|++||||++++|||
T Consensus         1 ~~~fl~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~~~~--~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yvG   78 (246)
T 3c5n_A            1 PREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEK--KVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIG   78 (246)
T ss_dssp             CTTGGGSCCCTTCEEEEEEEECC------CCCEEEEEESSSS--CCEEEEEEECTTCSSCEEEEESCTTC------CEEE
T ss_pred             ChhHcCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEeCCC--cEEEEeeeeccCCCCceEEEEeCccccccCCceEEE
Confidence            579999999999999999999999999999999999998643  469999999999999999999999999999999999


Q ss_pred             eeeccccccEEEEecCCCCCccCCccccccccccceeEEEEEEc----cCCCceEEEEEecccccc--------------
Q psy17671        160 KLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQELAAIIYV----SIKSNREFICVFVDITAL--------------  221 (248)
Q Consensus       160 KLRSNflGTkFtiYD~G~~p~k~~~~~~~~~~~~R~ELg~V~Ye----g~~GPRkM~v~iP~i~~~--------------  221 (248)
                      ||||||+||+|+|||+|.+|.++.+   .+....|+|||+|+||    +.+|||+|+|+||+++..              
T Consensus        79 KLrsNf~Gt~F~iyD~g~~p~~~~s---~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~iP~~~~~~~~~~~~p~~~~~~  155 (246)
T 3c5n_A           79 KLRSNLLGNRFTVFDNGQNPQRGYS---TNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMSAENERVPIRPRNASDG  155 (246)
T ss_dssp             EEEECSSSSEEEEECSCBCGGGCTT---SCGGGBCCEEEEEEECCCCCC---CCCEEEEEECBCTTSCBCCCCCSSTTSS
T ss_pred             EEEEccCCCEEEEECCCCCcccccC---cccccccEEEEEEEEEecccCCCCCeEEEEEecCcccCCCEeeccCCCcccc
Confidence            9999999999999999999987653   2356889999999999    889999999999998421              


Q ss_pred             ---------ccCceeeccccccceeeeee
Q psy17671        222 ---------LSDFFAINFHLSRIFLHWQC  241 (248)
Q Consensus       222 ---------~~d~~~l~~~~~~~~~~~~~  241 (248)
                               ..+..+|..+.|+|+|++||
T Consensus       156 ~~~~~~~~~~~~~~~l~nK~P~w~e~~~~  184 (246)
T 3c5n_A          156 LLVRWQNKTLESLIELHNKPPVWNDDSGS  184 (246)
T ss_dssp             HHHHHHHTCCTTEEEEEECCCEEETTTTE
T ss_pred             chhhhhccCCcceEEEeccCCcccccCCE
Confidence                     13578899999999999998

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*

Probab=100.00  E-value=1.8e-51  Score=373.83  Aligned_cols=163  Identities=46%  Similarity=0.759  Sum_probs=125.9

Q ss_pred             ccccccchhhhhcccCCCceeEEEEEEEcCCCCCCCCcceeeeeeeecCCceEEEEeeeeccCCCCeeEEEEcCCCCCCC
Q psy17671         73 QGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTTSNYLISTDPTDLSR  152 (248)
Q Consensus        73 q~~i~~~l~~fl~~P~P~~~~vqC~I~R~k~g~~~gl~PtY~LyLe~~~gk~~fLLAARKrk~s~tSnYiIS~d~~dlSr  152 (248)
                      ..++. ||++||++|+|++++|||+|+|+|+|+++|+||+|||||+.+++  +|||||||+++++||||+||+|++||||
T Consensus        19 ~~~~~-~~~~fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~~~~~--~fLLaarK~k~~~ts~YiIS~d~~dlsr   95 (276)
T 2fim_A           19 YFQSM-EPREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKK--VFLLAGRKRKRSKTANYLISIDPTNLSR   95 (276)
T ss_dssp             -------CTTGGGSCCCTTCCEEEEEEEEC-------CCEEEEEECSSSC--EEEEEEEECTTCSSCEEEEESCTTC---
T ss_pred             ccCHH-HHHHHhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEeCCCC--EEEEEEEeccCCCCceEEEEecchhccc
Confidence            34555 89999999999999999999999999999999999999986554  5999999999999999999999999999


Q ss_pred             cccceeeeeeccccccEEEEecCCCCCccCCccccccccccceeEEEEEEc----cCCCceEEEEEecccccc-------
Q psy17671        153 KGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQELAAIIYV----SIKSNREFICVFVDITAL-------  221 (248)
Q Consensus       153 ~s~~yvGKLRSNflGTkFtiYD~G~~p~k~~~~~~~~~~~~R~ELg~V~Ye----g~~GPRkM~v~iP~i~~~-------  221 (248)
                      ++++|||||||||+||+|+|||+|.+|+++.+   .+....|+|||+|+||    +.+|||+|+|+||+++..       
T Consensus        96 ~s~~yvGKLrSNflGtkF~iyD~G~~p~~~~s---~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~~~~~~~~~~~  172 (276)
T 2fim_A           96 GGENFIGKLRSNLLGNRFTVFDNGQNPQRGYS---TNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMSAENERVPIR  172 (276)
T ss_dssp             ---CEEEEEEECSSSSEEEEECSSBCGGGCTT---SCGGGBCCEEEEEEEC---------CCEEEEEECBCTTSCBCCCC
T ss_pred             CCceEEEEEEEccCCCEEEEECCCCCcccccC---cccccccEEEEEEEEEecccCCCCCeEEEEEecCcccCCCEeccc
Confidence            99999999999999999999999999987653   2356789999999999    889999999999987421       


Q ss_pred             ----------------ccCceeeccccccceeeeee
Q psy17671        222 ----------------LSDFFAINFHLSRIFLHWQC  241 (248)
Q Consensus       222 ----------------~~d~~~l~~~~~~~~~~~~~  241 (248)
                                      ..+..+|..+.|+|+|++||
T Consensus       173 p~~~~~~ll~~~~~~~~~~~~~l~nK~P~wne~~~~  208 (276)
T 2fim_A          173 PRNASDGLLVRWQNKTLESLIELHNKPPVWNDDSGS  208 (276)
T ss_dssp             CSSTTCSHHHHHHHTCCTTEEEEEECCCEEETTTTE
T ss_pred             CCCcccccchhhhccCCcceEeeeccCCcccccCCE
Confidence                            13478899999999999998

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A

Probab=99.01  E-value=8.9e-11  Score=105.02  Aligned_cols=49  Identities=53%  Similarity=1.016  Sum_probs=37.4

Q ss_pred             cccccccccCCCceeEEEEccCCCCcCCCcccccccccccccCCCcccccc
Q psy17671         24 LERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKPIEMQG   74 (248)
Q Consensus        24 ~~~~v~~Pa~~g~~v~critrdk~g~dkg~~p~y~l~le~~~~~kvfeLq~   74 (248)
                      |++|+++|+|+|.+++|+|+||++|+|+|+||+||||+|.  +++.|.|+.
T Consensus         1 ~~~fl~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~~--~~~~fLlaa   49 (246)
T 3c5n_A            1 PREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDT--EKKVFLLAG   49 (246)
T ss_dssp             CTTGGGSCCCTTCEEEEEEEECC------CCCEEEEEESS--SSCCEEEEE
T ss_pred             ChhHcCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEeC--CCcEEEEee
Confidence            6899999999999999999999999999999999999983  455666643

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*

Probab=98.95  E-value=1.6e-10  Score=105.01  Aligned_cols=53  Identities=47%  Similarity=0.842  Sum_probs=35.7

Q ss_pred             ccccccccccccccCCCceeEEEEccCCCCcCCCcccccccccccccCCCccccc
Q psy17671         19 EVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKPIEMQ   73 (248)
Q Consensus        19 ~~~~~~~~~v~~Pa~~g~~v~critrdk~g~dkg~~p~y~l~le~~~~~kvfeLq   73 (248)
                      .+++|+++|+.+|+|+|.+++|+|+||++|+++|+||+||||++.  +.+.|.|+
T Consensus        20 ~~~~~~~~fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~~--~~~~fLLa   72 (276)
T 2fim_A           20 FQSMEPREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDT--EKKVFLLA   72 (276)
T ss_dssp             -----CTTGGGSCCCTTCCEEEEEEEEC-------CCEEEEEECS--SSCEEEEE
T ss_pred             cCHHHHHHHhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEeC--CCCEEEEE
Confidence            358899999999999999999999999999999999999999984  33455543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	248
d1c8za_	265	d.23.1.1 (A:) Transcriptional factor tubby, C-term	7e-44

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  146 bits (370), Expect = 7e-44
 Identities = 82/126 (65%), Positives = 103/126 (81%), Gaps = 1/126 (0%)

Query: 77  VGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKS 136
           V +LE F L PA Q ++ KCRITRD+KG+DRG++PTYFLHL+R+ GKK+FLLAGRKRKKS
Sbjct: 7   VQDLEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKS 66

Query: 137 TTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQE 196
            TSNYLIS DPTDLSR G+S++GKLRSNL+GT+FTVYDNG + ++ +     E   +RQE
Sbjct: 67  KTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSS-TLESGTLRQE 125

Query: 197 LAAIIY 202
           LAA+ Y
Sbjct: 126 LAAVCY 131

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	248
d1c8za_	265	Transcriptional factor tubby, C-terminal domain {M	100.0
d1c8za_	265	Transcriptional factor tubby, C-terminal domain {M	98.86

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.2e-51  Score=369.36  Aligned_cols=168  Identities=51%  Similarity=0.806  Sum_probs=152.1

Q ss_pred             cccccccchhhhhcccCCCceeEEEEEEEcCCCCCCCCcceeeeeeeecCCceEEEEeeeeccCCCCeeEEEEcCCCCCC
Q psy17671         72 MQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTTSNYLISTDPTDLS  151 (248)
Q Consensus        72 Lq~~i~~~l~~fl~~P~P~~~~vqC~I~R~k~g~~~gl~PtY~LyLe~~~gk~~fLLAARKrk~s~tSnYiIS~d~~dlS  151 (248)
                      ++.+|. ||++||+||+|+|++|||+|+|||+|+++++||+|+|||++++|+++|||||||+++++++|||||+|++|+|
T Consensus         3 ~~~~~~-~~~~Fl~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~~~gk~kfLLaArK~r~~~~~~yiIS~~~~d~s   81 (265)
T d1c8za_           3 VDIEVQ-DLEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISVDPTDLS   81 (265)
T ss_dssp             CCCCCC-SHHHHHHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEECTTSCEEEEEEEEEEESSSSEEEEEESCHHHHT
T ss_pred             cccchh-hHHHHhcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEccCCCceeEEEEEeeecCCCcceEEEEccHHHhc
Confidence            556777 9999999999999999999999999999999999999999999988999999999999999999999999999


Q ss_pred             CcccceeeeeeccccccEEEEecCCCCCccCCccccccccccceeEEEEEEc----cCCCceEEEEEecccccc------
Q psy17671        152 RKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQELAAIIYV----SIKSNREFICVFVDITAL------  221 (248)
Q Consensus       152 r~s~~yvGKLRSNflGTkFtiYD~G~~p~k~~~~~~~~~~~~R~ELg~V~Ye----g~~GPRkM~v~iP~i~~~------  221 (248)
                      |++++|||||||||+||+|+|||+|.+|+++... .....+.|+|||+|.||    +++|||+|+|+||+++..      
T Consensus        82 r~s~~yvGKlrSNflGTkF~iYD~G~~p~~~~~~-~~~~~~~r~ela~V~Ye~n~l~~rGPR~m~~~ip~~~~~~~~~~~  160 (265)
T d1c8za_          82 RGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSS-TLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVCI  160 (265)
T ss_dssp             TTCCCCSEEEEECTTSSEEEEECSSBCGGGCCTT-GGGSSSBCCEEEEEEECCCCSSCCSCCCEEEEEECBCTTSCBCCC
T ss_pred             ccccceeEEeeccccCCEEEEecCCCCccccccc-ccccCccceeeeEEEEeeehhccCCCceeEEEecCCCcccccccc
Confidence            9999999999999999999999999999887652 22346789999999999    899999999999998532      


Q ss_pred             -----------------ccCceeeccccccceeeeee
Q psy17671        222 -----------------LSDFFAINFHLSRIFLHWQC  241 (248)
Q Consensus       222 -----------------~~d~~~l~~~~~~~~~~~~~  241 (248)
                                       .++..+|..+.|.|++..+|
T Consensus       161 ~p~~~~~~~~~~~~~~~~~~~~~l~~k~P~~n~~~~~  197 (265)
T d1c8za_         161 RPRNEHETLLARWQNKNTESIIELQNKTPVWNDDTQS  197 (265)
T ss_dssp             CCSSTTSSHHHHHHTTCCSSEEEEEECCCEEETTTTE
T ss_pred             CCCCcchhhhHHhhccCcccceEEecCCCeeeccCCE
Confidence                             24466788999999988775

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=3e-10  Score=100.54  Aligned_cols=53  Identities=58%  Similarity=1.077  Sum_probs=49.6

Q ss_pred             ccccccccccccCCCceeEEEEccCCCCcCCCcccccccccccccCCCccccc
Q psy17671         21 VGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKPIEMQ   73 (248)
Q Consensus        21 ~~~~~~~v~~Pa~~g~~v~critrdk~g~dkg~~p~y~l~le~~~~~kvfeLq   73 (248)
                      ++|+++|+++|+|++.+|+|.|.||+.|+++++||+|++|++.++|++.|.|+
T Consensus         7 ~~~~~~Fl~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~~~gk~kfLLa   59 (265)
T d1c8za_           7 VQDLEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLA   59 (265)
T ss_dssp             CCSHHHHHHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEECTTSCEEEEEE
T ss_pred             hhhHHHHhcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEccCCCceeEEEE
Confidence            99999999999999999999999999999999999999999998887666553