Psyllid ID: psy17697

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Protein Sequence
MGWSSRCSDLLIDIDQLGLTVESCFNTWLSVGKHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPGK
Secondary Structure (PSIPRED)
ccccccccccEEEcccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccEEcHHHHcccccccEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEcccccccccHcccEEEcccccccccEEEEccccccccccccccHHHHHHHccHHHHHHHHHcccccEEcHHHHHcccEEEEEEccccccEEccccc
Coil and Loop (DISEMBL)
mgwssrcsdLLIDIDQLGLTVESCFNTWLSVGKHHALAARVLKLKIgeksnniphlpadafrstglvnlhnlllkdcnitdidpdafsglgilieldltknrihtlhpgk
Flexible Loop (DISEMBL)
MGWSSRCSDLLIDIDQLGLTVESCFNTWLSVGKHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIeldltknrihtlhpgk
Low Complexity Region (SEG)
MGWSSRCSDLLIDIDQLGLTVESCFNTWLSVGKHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPGK
Disordered region (IsUnstruct)
******CSDLLIDIDQLGLTVESCFNTWLSVGKHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH******
Disordered Region (DISOPRED)
*G*SSRCSDLLIDIDQLGLTVESCFNTWLSVGKHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH*LH***
Disordered Region (DISEMBL)
MGWSSRCSDLLIDIDQLGLTVESCFNTWLSVGKHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPGK
Disordered Region (DISPRO)
****SRCSDLLIDIDQLGLTVESCFNTWLSVGKHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGWSSRCSDLLIDIDQLGLTVESCFNTWLSVGKHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	110	2.2.26 [Sep-21-2011]
Q6DF55	661	Vasorin OS=Xenopus tropic	yes	N/A	0.509	0.084	0.431	0.0001
O70210	358	Chondroadherin OS=Rattus	yes	N/A	0.527	0.162	0.435	0.0003
O55226	358	Chondroadherin OS=Mus mus	yes	N/A	0.536	0.164	0.426	0.0003

>sp|Q6DF55|VASN_XENTR Vasorin OS=Xenopus tropicalis GN=vasn PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
           N +  LP   FR+  L NL NL L    +T+I  D F GL  L  L L  NRI ++HP
Sbjct: 84  NQLSSLPGGVFRN--LANLSNLDLTSNQLTEISADTFQGLSRLERLYLNGNRIRSIHP 139

May act as an inhibitor of TGF-beta signaling.
Xenopus tropicalis (taxid: 8364)

>sp|O70210|CHAD_RAT Chondroadherin OS=Rattus norvegicus GN=Chad PE=2 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 49  KSNNIPHLPADAFRST-GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107
           + NN P L A++FR+   LV+LH   L+ CNI ++   AF GL  LI L L+ N I  L 
Sbjct: 58  QRNNFPVLAANSFRTVPNLVSLH---LQHCNIREVAAGAFRGLKQLIYLYLSHNDIRVLR 114

Query: 108 PG 109
            G
Sbjct: 115 AG 116

Promotes attachment of chondrocytes, fibroblasts, and osteoblasts. This binding is mediated (at least for chondrocytes and fibroblasts) by the integrin alpha(2)beta(1). May play an important role in the regulation of chondrocyte growth and proliferation.

Rattus norvegicus (taxid: 10116)

>sp|O55226|CHAD_MOUSE Chondroadherin OS=Mus musculus GN=Chad PE=2 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 49  KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
           + NN P L A++FR+  + NL +L L+ CNI ++   AF GL  LI L L+ N I  L  
Sbjct: 58  QRNNFPVLAANSFRT--MPNLVSLHLQHCNIREVAAGAFRGLKQLIYLYLSHNDIRVLRA 115

Query: 109 G 109
           G
Sbjct: 116 G 116

Promotes attachment of chondrocytes, fibroblasts, and osteoblasts. This binding is mediated (at least for chondrocytes and fibroblasts) by the integrin alpha(2)beta(1). May play an important role in the regulation of chondrocyte growth and proliferation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
193647905	799	PREDICTED: hypothetical protein LOC10016	0.790	0.108	0.456	2e-12
195398783	931	GJ15735 [Drosophila virilis] gi|19415042	0.527	0.062	0.534	6e-11
195059514	962	GH17649 [Drosophila grimshawi] gi|193896	0.527	0.060	0.517	8e-10
198471062	915	GA11471 [Drosophila pseudoobscura pseudo	0.536	0.064	0.508	9e-10
307174207	762	Leucine-rich repeat-containing protein 2	0.536	0.077	0.559	1e-09
24643232	931	kekkon5, isoform A [Drosophila melanogas	0.536	0.063	0.508	1e-09
28569548	917	kekkon5 precursor [Drosophila melanogast	0.536	0.064	0.508	1e-09
195133704	923	GI16086 [Drosophila mojavensis] gi|19390	0.527	0.062	0.517	2e-09
195479805	922	GE15841 [Drosophila yakuba] gi|194188559	0.536	0.063	0.491	2e-09
194892928	921	GG19223 [Drosophila erecta] gi|190649417	0.536	0.064	0.491	3e-09

>gi|193647905|ref|XP_001946145.1| PREDICTED: hypothetical protein LOC100167808 isoform 1 [Acyrthosiphon pisum] gi|328697287|ref|XP_003240297.1| PREDICTED: hypothetical protein LOC100167808 isoform 2 [Acyrthosiphon pisum] gi|328697289|ref|XP_003240298.1| PREDICTED: hypothetical protein LOC100167808 isoform 3 [Acyrthosiphon pisum]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 5/92 (5%)

Query: 18  GLTVESCFNTWL-SVGKHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKD 76
           G  +  C N+ L S+ K  +   +VL L     +N I  +  DAFR  GL+NLH L+ ++
Sbjct: 42  GQKMAECINSSLTSIPKTLSNEVQVLDLT----NNKILEINKDAFREVGLINLHKLIARN 97

Query: 77  CNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
           C+I  +D DAF GL ILIELDL+ N IH LHP
Sbjct: 98  CSIELVDKDAFRGLEILIELDLSNNNIHVLHP 129

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195398783|ref|XP_002058000.1| GJ15735 [Drosophila virilis] gi|194150424|gb|EDW66108.1| GJ15735 [Drosophila virilis]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 40/58 (68%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
           N IP L  D F+  GL NLH + L++C I +++ DAF GL ILIELD++ NRI  LHP
Sbjct: 69  NQIPELRRDEFQVAGLQNLHKIYLRNCTIQEVNRDAFKGLAILIELDMSSNRISQLHP 126

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195059514|ref|XP_001995652.1| GH17649 [Drosophila grimshawi] gi|193896438|gb|EDV95304.1| GH17649 [Drosophila grimshawi]

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 39/58 (67%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
           N IP L  + F   GL NLH + L++C I +++ DAF GL ILIELD++ NRI  LHP
Sbjct: 86  NQIPELRREEFLVAGLQNLHKIYLRNCTIQEVNRDAFKGLPILIELDMSSNRIRQLHP 143

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198471062|ref|XP_001355488.2| GA11471 [Drosophila pseudoobscura pseudoobscura] gi|198145749|gb|EAL32547.2| GA11471 [Drosophila pseudoobscura pseudoobscura]

 Score = 67.4 bits (163), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 39/59 (66%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           N IP L  + F   GL NLH + L++C I ++  +AF GL ILIELD++ NRI  LHPG
Sbjct: 72  NQIPELRREEFLMAGLPNLHKVYLRNCTIQEVHREAFKGLNILIELDISSNRIRELHPG 130

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174207|gb|EFN64852.1| Leucine-rich repeat-containing protein 24 [Camponotus floridanus]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 42/59 (71%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           N++ HL  DAF    LVNLH L+L++C I  I  DAFSGL I+IE+DL+ N I +LHPG
Sbjct: 66  NHMNHLTHDAFSRVYLVNLHKLILRECGIESIHTDAFSGLKIVIEIDLSGNNIRSLHPG 124

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24643232|ref|NP_573382.1| kekkon5, isoform A [Drosophila melanogaster] gi|24643234|ref|NP_728242.1| kekkon5, isoform B [Drosophila melanogaster] gi|24643236|ref|NP_728243.1| kekkon5, isoform C [Drosophila melanogaster] gi|386764700|ref|NP_001245746.1| kekkon5, isoform D [Drosophila melanogaster] gi|22832560|gb|AAF48953.2| kekkon5, isoform A [Drosophila melanogaster] gi|22832561|gb|AAN09488.1| kekkon5, isoform B [Drosophila melanogaster] gi|22832562|gb|AAN09489.1| kekkon5, isoform C [Drosophila melanogaster] gi|71834212|gb|AAZ41778.1| LP23752p [Drosophila melanogaster] gi|220952102|gb|ACL88594.1| kek5-PA [synthetic construct] gi|383293477|gb|AFH07458.1| kekkon5, isoform D [Drosophila melanogaster]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 39/59 (66%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           N IP L  + F   GL N+H + L++C I ++  +AF GL ILIELDL+ NRI  LHPG
Sbjct: 83  NQIPELRREEFLLAGLPNVHKIFLRNCTIQEVHREAFKGLHILIELDLSGNRIRELHPG 141

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28569548|gb|AAO43730.1| kekkon5 precursor [Drosophila melanogaster]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/59 (50%), Positives = 39/59 (66%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           N IP L  + F   GL N+H + L++C I ++  +AF GL ILIELDL+ NRI  LHPG
Sbjct: 69  NQIPELRREEFLLAGLPNVHKIFLRNCTIQEVHREAFKGLHILIELDLSGNRIRELHPG 127

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195133704|ref|XP_002011279.1| GI16086 [Drosophila mojavensis] gi|193907254|gb|EDW06121.1| GI16086 [Drosophila mojavensis]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 39/58 (67%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
           N IP L  + F+  GL NLH + L++C I +++ DAF GL ILIELDL+ N I  LHP
Sbjct: 60  NQIPELRREEFQVAGLQNLHKIYLRNCTIQEVNRDAFKGLPILIELDLSSNHIKHLHP 117

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195479805|ref|XP_002101035.1| GE15841 [Drosophila yakuba] gi|194188559|gb|EDX02143.1| GE15841 [Drosophila yakuba]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           N IP L  + F   GL N+H + L++C I ++  +AF GL ILIELD++ NRI  LHPG
Sbjct: 81  NQIPELRREEFLLAGLPNVHKIFLRNCTIQEVHREAFKGLHILIELDMSGNRIRELHPG 139

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194892928|ref|XP_001977768.1| GG19223 [Drosophila erecta] gi|190649417|gb|EDV46695.1| GG19223 [Drosophila erecta]

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           N IP L  + F   GL N+H + L++C I ++  +AF GL ILIELD++ NRI  LHPG
Sbjct: 81  NQIPELRREEFLLAGLPNVHKIFLRNCTIQEVHREAFKGLHILIELDMSGNRIRELHPG 139

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
FB|FBgn0031016	931	kek5 "kekkon5" [Drosophila mel	0.536	0.063	0.508	4.7e-10
ZFIN|ZDB-GENE-040426-1130	363	chad "chondroadherin" [Danio r	0.718	0.217	0.367	1e-05
FB|FBgn0039862	836	kek6 "kek6" [Drosophila melano	0.509	0.066	0.375	5.5e-05
FB|FBgn0243486	741	rdo "reduced ocelli" [Drosophi	0.872	0.129	0.330	8.9e-05
RGD|2336	358	Chad "chondroadherin" [Rattus	0.509	0.156	0.45	9.7e-05
RGD|1308398	334	Lrrc26 "leucine rich repeat co	0.518	0.170	0.389	0.00011
MGI|MGI:1096866	358	Chad "chondroadherin" [Mus mus	0.509	0.156	0.45	0.00012
FB|FBgn0032484	649	kek4 "kekkon4" [Drosophila mel	0.8	0.135	0.351	0.00022
FB|FBgn0262473	1097	Tl "Toll" [Drosophila melanoga	0.618	0.061	0.371	0.00026
FB|FBgn0015399	880	kek1 "kekkon-1" [Drosophila me	0.754	0.094	0.310	0.00033

FB|FBgn0031016 kek5 "kekkon5" [Drosophila melanogaster (taxid:7227)]

 Score = 156 (60.0 bits), Expect = 4.7e-10, P = 4.7e-10
 Identities = 30/59 (50%), Positives = 39/59 (66%)

Query:    51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
             N IP L  + F   GL N+H + L++C I ++  +AF GL ILIELDL+ NRI  LHPG
Sbjct:    83 NQIPELRREEFLLAGLPNVHKIFLRNCTIQEVHREAFKGLHILIELDLSGNRIRELHPG 141

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0030510 "regulation of BMP signaling pathway" evidence=IDA

ZFIN|ZDB-GENE-040426-1130 chad "chondroadherin" [Danio rerio (taxid:7955)]

 Score = 110 (43.8 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 32/87 (36%), Positives = 44/87 (50%)

Query:    24 CFNTWLSVGKHHALAARVLKLKIGEKSNNIPHLPADAFRST-GLVNLHNLLLKDCNITDI 82
             C N  L      + A R+L L+     NN+ +LP   F    GL++LH   L+ C I ++
Sbjct:    42 CDNVGLKKIPRISEATRLLNLQ----RNNLGNLPTGGFSEMKGLISLH---LQHCQIREL 94

Query:    83 DPDAFSGLGILIELDLTKNRIHTLHPG 109
                AF GL  LI L L+ N I T+ PG
Sbjct:    95 SGQAFKGLNKLIYLYLSDNEISTIKPG 121

GO:0008150 "biological_process" evidence=ND

FB|FBgn0039862 kek6 "kek6" [Drosophila melanogaster (taxid:7227)]

 Score = 108 (43.1 bits), Expect = 5.5e-05, P = 5.5e-05
 Identities = 21/56 (37%), Positives = 35/56 (62%)

Query:    51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
             N+IP+L  + F + GL+NL  + LK   +  I  ++F  L IL+E+DL+ N++  L
Sbjct:    79 NHIPYLNREEFSTLGLLNLQRIYLKKSEVQYIHKESFRNLKILVEIDLSDNKLEML 134

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0243486 rdo "reduced ocelli" [Drosophila melanogaster (taxid:7227)]

 Score = 94 (38.1 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
 Identities = 34/103 (33%), Positives = 57/103 (55%)

Query:     2 GWSSRCSDLLIDIDQLGLTVESCFNTWLSVGKHHALAARVLKLKIGE-KSNNIPHLPADA 60
             G +S  S   +D+D   + +    N+ +++G   AL  + +KL+I     +N+P + A++
Sbjct:    46 GLNSLLSPNELDVDVKVIIIRGPRNS-ITIGP--ALR-QFMKLEILRITDSNLPAIGAES 101

Query:    61 FRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
             F   GL  L  L L   NIT+I  + F G   L+ELDL+KN++
Sbjct:   102 F--WGLKYLRILDLSKNNITNITENNFRGQDNLLELDLSKNKV 142

GO:0008056 "ocellus development" evidence=IMP

RGD|2336 Chad "chondroadherin" [Rattus norvegicus (taxid:10116)]

 Score = 101 (40.6 bits), Expect = 9.7e-05, P = 9.7e-05
 Identities = 27/60 (45%), Positives = 35/60 (58%)

Query:    51 NNIPHLPADAFRST-GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
             NN P L A++FR+   LV+LH   L+ CNI ++   AF GL  LI L L+ N I  L  G
Sbjct:    60 NNFPVLAANSFRTVPNLVSLH---LQHCNIREVAAGAFRGLKQLIYLYLSHNDIRVLRAG 116

GO:0001502 "cartilage condensation" evidence=IEP

GO:0005578 "proteinaceous extracellular matrix" evidence=TAS

RGD|1308398 Lrrc26 "leucine rich repeat containing 26" [Rattus norvegicus (taxid:10116)]

 Score = 100 (40.3 bits), Expect = 0.00011, P = 0.00011
 Identities = 23/59 (38%), Positives = 35/59 (59%)

Query:    51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
             N +  LP  AF   G + L+ L+L++  +  +   AF GLG+L  LDL+ N++ TL PG
Sbjct:    85 NRVSTLPPGAFADAGAL-LY-LVLRENRLRSVHARAFWGLGVLQRLDLSSNQLETLSPG 141

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0008076 "voltage-gated potassium channel complex" evidence=ISO;ISS

GO:0015459 "potassium channel regulator activity" evidence=ISO;ISS

MGI|MGI:1096866 Chad "chondroadherin" [Mus musculus (taxid:10090)]

 Score = 100 (40.3 bits), Expect = 0.00012, P = 0.00012
 Identities = 27/60 (45%), Positives = 35/60 (58%)

Query:    51 NNIPHLPADAFRST-GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
             NN P L A++FR+   LV+LH   L+ CNI ++   AF GL  LI L L+ N I  L  G
Sbjct:    60 NNFPVLAANSFRTMPNLVSLH---LQHCNIREVAAGAFRGLKQLIYLYLSHNDIRVLRAG 116

GO:0005576 "extracellular region" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

FB|FBgn0032484 kek4 "kekkon4" [Drosophila melanogaster (taxid:7227)]

 Score = 101 (40.6 bits), Expect = 0.00022, P = 0.00022
 Identities = 32/91 (35%), Positives = 48/91 (52%)

Query:    18 GLTVESCFNTWLSVGKHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDC 77
             G     C N  LS G    L+  V  L +    N+I +L  +AF +T L NL  LL+++ 
Sbjct:    52 GKKTADCRNLSLS-GVPEYLSPEVQVLDLSH--NHIFYLEENAFLTTHLQNLQKLLIRNG 108

Query:    78 NITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
              +  ++  +F+ L ILIELDL+ N +  L P
Sbjct:   109 TLKYLNQRSFTQLQILIELDLSNNLLVDLLP 139

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IMP

FB|FBgn0262473 Tl "Toll" [Drosophila melanogaster (taxid:7227)]

 Score = 103 (41.3 bits), Expect = 0.00026, P = 0.00026
 Identities = 26/70 (37%), Positives = 39/70 (55%)

Query:    37 LAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIEL 96
             L  +V  L +   +N + HLP   F  T   NL +L L+D  +T I  D FS LG L+ L
Sbjct:   362 LEHQVNLLSLDLSNNRLTHLPDSLFAHT--TNLTDLRLEDNLLTGISGDIFSNLGNLVTL 419

Query:    97 DLTKNRIHTL 106
              +++NR+ T+
Sbjct:   420 VMSRNRLRTI 429

GO:0019730 "antimicrobial humoral response" evidence=IGI

GO:0019732 "antifungal humoral response" evidence=IMP

GO:0006963 "positive regulation of antibacterial peptide biosynthetic process" evidence=IMP

GO:0006967 "positive regulation of antifungal peptide biosynthetic process" evidence=IMP

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA;NAS

GO:0008063 "Toll signaling pathway" evidence=IEA;NAS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0006952 "defense response" evidence=NAS;TAS

GO:0009950 "dorsal/ventral axis specification" evidence=IMP;NAS;TAS

GO:0030097 "hemopoiesis" evidence=TAS

GO:0007416 "synapse assembly" evidence=IMP

GO:0006955 "immune response" evidence=TAS

GO:0009620 "response to fungus" evidence=TAS

GO:0016021 "integral to membrane" evidence=NAS

GO:0009880 "embryonic pattern specification" evidence=TAS

GO:0070976 "TIR domain binding" evidence=IPI

GO:0009617 "response to bacterium" evidence=NAS

GO:0050832 "defense response to fungus" evidence=TAS

GO:0045087 "innate immune response" evidence=IDA;NAS;TAS

GO:0019955 "cytokine binding" evidence=TAS

GO:0050830 "defense response to Gram-positive bacterium" evidence=IEA;TAS

GO:0035007 "regulation of melanization defense response" evidence=TAS

GO:0035172 "hemocyte proliferation" evidence=IMP;TAS

GO:0000910 "cytokinesis" evidence=IMP

GO:0007352 "zygotic specification of dorsal/ventral axis" evidence=IEA;NAS

GO:0045610 "regulation of hemocyte differentiation" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0033565 "ESCRT-0 complex" evidence=IDA

GO:0016201 "synaptic target inhibition" evidence=IMP

GO:0009897 "external side of plasma membrane" evidence=IDA

FB|FBgn0015399 kek1 "kekkon-1" [Drosophila melanogaster (taxid:7227)]

 Score = 101 (40.6 bits), Expect = 0.00033, P = 0.00033
 Identities = 27/87 (31%), Positives = 44/87 (50%)

Query:    20 TVESCFNTWLSVGKHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNI 79
             TVE      + + +H     +VL +      N +  L  + F    L+NL  L L++C I
Sbjct:   104 TVECIDRHLIQIPEHIDPNTQVLDMS----GNKLQTLSNEQFIRANLLNLQKLYLRNCKI 159

Query:    80 TDIDPDAFSGLGILIELDLTKNRIHTL 106
              +I+ + F GL  L+ELDL+ N + T+
Sbjct:   160 GEIERETFKGLTNLVELDLSHNLLVTV 186

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0048477 "oogenesis" evidence=IMP

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=IGI;IMP;TAS

GO:0005154 "epidermal growth factor receptor binding" evidence=IPI

GO:0007175 "negative regulation of epidermal growth factor-activated receptor activity" evidence=IDA;TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0000910 "cytokinesis" evidence=IMP

GO:0048019 "receptor antagonist activity" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	110
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-05

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 3e-07
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 68  NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           NL +L L +  +T I   AF GL  L  LDL+ N + ++ P 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPE 42

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 3e-05
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
           +N +  +P  AF+  GL NL  L L   N+T I P+AFSGL  L  LDL+ N +
Sbjct: 9   NNRLTVIPDGAFK--GLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	110
KOG4237|consensus	498		99.38
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.22
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.43
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.4
KOG4237|consensus	498		98.35
KOG4194|consensus	873		98.31
KOG4194|consensus	873		98.21
KOG0444|consensus	1255		98.0
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.97
KOG0617|consensus	264		97.83
PLN03150	623	hypothetical protein; Provisional	97.75
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.72
PLN03150	623	hypothetical protein; Provisional	97.69
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.58
KOG1259|consensus	490		97.57
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.52
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.44
KOG0444|consensus	1255		97.22
KOG0618|consensus	1081		97.22
KOG0617|consensus	264		97.2
KOG0472|consensus	565		97.05
KOG4579|consensus	177		96.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.81
KOG0472|consensus	565		96.78
KOG1644|consensus	233		96.69
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.68
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.57
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.43
KOG0618|consensus	1081		96.37
KOG4579|consensus	177		96.37
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.29
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.24
KOG1644|consensus	233		96.03
KOG0532|consensus	722		95.96
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.94
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.82
KOG0531|consensus	414		95.81
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.77
smart00370	26	LRR Leucine-rich repeats, outliers.	95.77
smart00370	26	LRR Leucine-rich repeats, outliers.	95.68
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.68
KOG1259|consensus	490		95.52
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.5
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.79
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.66
KOG0531|consensus	414		94.57
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	93.63
KOG1859|consensus	1096		93.39
KOG4658|consensus	889		93.28
KOG3207|consensus	505		93.05
PLN03210	1153	Resistant to P. syringae 6; Provisional	92.27
PLN03210	1153	Resistant to P. syringae 6; Provisional	92.27
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	92.19
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	92.05
KOG1859|consensus	1096		91.56
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	91.22
KOG0532|consensus	722		90.94
KOG4658|consensus	889		90.43
KOG2739|consensus	260		88.62
KOG3207|consensus	505		88.09
PRK15386	426	type III secretion protein GogB; Provisional	84.86
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	84.78
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.45

>KOG4237|consensus

Probab=99.38  E-value=1.1e-13  Score=104.52  Aligned_cols=94  Identities=31%  Similarity=0.413  Sum_probs=78.7

Q ss_pred             hhhcccccCCCCCCCcccccC---ceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccC
Q psy17697         10 LLIDIDQLGLTVESCFNTWLS---VGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKD   76 (110)
Q Consensus        10 ~~~~~~~~~~cp~~c~c~~~~---~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~   76 (110)
                      ...+...+..||.+|.|+..+   +.|... +         +++.|++    ..|.|+.||+++|.  .+..|+.++|+.
T Consensus        27 ~~~C~~~~~~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirL----dqN~I~~iP~~aF~--~l~~LRrLdLS~  100 (498)
T KOG4237|consen   27 VPTCAHSASACPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRL----DQNQISSIPPGAFK--TLHRLRRLDLSK  100 (498)
T ss_pred             hhhhhhccccCCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEe----ccCCcccCChhhcc--chhhhceecccc
Confidence            444555578899999999843   444333 2         8889999    99999999999999  899999999999


Q ss_pred             CCCcccCcccccCCcCCcEEeCCC-CCCccccCC
Q psy17697         77 CNITDIDPDAFSGLGILIELDLTK-NRIHTLHPG  109 (110)
Q Consensus        77 n~l~~i~~~~f~~l~~L~~l~Ls~-N~l~~l~~~  109 (110)
                      |+|++|.|++|.++.++..|.+-+ |+|+.+|.+
T Consensus       101 N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~  134 (498)
T KOG4237|consen  101 NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG  134 (498)
T ss_pred             cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence            999999999999999987776655 999998764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.22  E-value=1e-11  Score=70.90  Aligned_cols=59  Identities=42%  Similarity=0.635  Sum_probs=56.5

Q ss_pred             eeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCC
Q psy17697         39 ARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI  103 (110)
Q Consensus        39 l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l  103 (110)
                      ++.+++    ++|.++.+++..|.  ++++|+.+++++|.++.+++++|.++++|+.+++++|+|
T Consensus         3 L~~L~l----~~n~l~~i~~~~f~--~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    3 LESLDL----SNNKLTEIPPDSFS--NLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             ESEEEE----TSSTESEECTTTTT--TGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcEEEC----CCCCCCccCHHHHc--CCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            678999    99999999999999  899999999999999999999999999999999999985

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.43  E-value=2.4e-07  Score=49.76  Aligned_cols=41  Identities=39%  Similarity=0.578  Sum_probs=34.0

Q ss_pred             ccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        67 ~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      ++|+.|++++|+|+.+++. +..+++|+.+++++|+|+.+++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCCcC
Confidence            3688999999999999774 7899999999999999998875

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.40  E-value=1.9e-07  Score=53.04  Aligned_cols=43  Identities=40%  Similarity=0.622  Sum_probs=40.2

Q ss_pred             ccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697         67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG  109 (110)
Q Consensus        67 ~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~  109 (110)
                      ++|+.+++++|+++.+++..|.++++|+.+++++|.++.++++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~   43 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPD   43 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETT
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHH
Confidence            4689999999999999999999999999999999999998874

...

>KOG4237|consensus

Probab=98.35  E-value=1.1e-07  Score=72.48  Aligned_cols=66  Identities=33%  Similarity=0.519  Sum_probs=62.6

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG  109 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~  109 (110)
                      ++++|++    ++|+|+.|.++.|.  +..+++.|+|.+|++..+....|.++..|+.|+|.+|+|+.+.++
T Consensus       275 ~L~~lnl----snN~i~~i~~~aFe--~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~  340 (498)
T KOG4237|consen  275 NLRKLNL----SNNKITRIEDGAFE--GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG  340 (498)
T ss_pred             cceEecc----CCCccchhhhhhhc--chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence            7889999    99999999999999  899999999999999999999999999999999999999988764

>KOG4194|consensus

Probab=98.31  E-value=3.5e-07  Score=72.75  Aligned_cols=65  Identities=37%  Similarity=0.552  Sum_probs=45.3

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.+++    +.|.|++++...|.  .-.+++.|+|++|.|+.+..+.|.++.+|..|-|++|.++++|.
T Consensus       150 alrslDL----SrN~is~i~~~sfp--~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~  214 (873)
T KOG4194|consen  150 ALRSLDL----SRNLISEIPKPSFP--AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ  214 (873)
T ss_pred             hhhhhhh----hhchhhcccCCCCC--CCCCceEEeeccccccccccccccccchheeeecccCcccccCH
Confidence            4455566    66666666666665  34567777777777777777777777777777777777777764

>KOG4194|consensus

Probab=98.21  E-value=5.4e-07  Score=71.73  Aligned_cols=66  Identities=33%  Similarity=0.388  Sum_probs=55.8

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG  109 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~  109 (110)
                      +++.|++    ..|+++.+..+...  |++.|+.|+++.|.|..|+.+.++..++|.+|+|+.|+|++++++
T Consensus       270 kme~l~L----~~N~l~~vn~g~lf--gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~  335 (873)
T KOG4194|consen  270 KMEHLNL----ETNRLQAVNEGWLF--GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG  335 (873)
T ss_pred             ccceeec----ccchhhhhhccccc--ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh
Confidence            6677777    78888887777766  788889999999999999988888888999999999999988875

>KOG0444|consensus

Probab=98.00  E-value=1.6e-06  Score=69.94  Aligned_cols=65  Identities=31%  Similarity=0.346  Sum_probs=57.7

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG  109 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~  109 (110)
                      +++.|++    ++|++.++|.+.=   ...++..|+|++|+|..|+...|.++..|.+||||+|++..+||+
T Consensus       104 dLt~lDL----ShNqL~EvP~~LE---~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ  168 (1255)
T KOG0444|consen  104 DLTILDL----SHNQLREVPTNLE---YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ  168 (1255)
T ss_pred             cceeeec----chhhhhhcchhhh---hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHH
Confidence            8888999    9999999998763   367888999999999999998899999999999999999999874

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.97  E-value=6.2e-06  Score=56.61  Aligned_cols=62  Identities=34%  Similarity=0.422  Sum_probs=23.7

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.|++    ++|.|+.++.  +.  .++.|+.|++++|.|+.+.+.....+++|+.|++++|+|+.+.
T Consensus        43 ~L~~L~L----s~N~I~~l~~--l~--~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~  104 (175)
T PF14580_consen   43 KLEVLDL----SNNQITKLEG--LP--GLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLN  104 (175)
T ss_dssp             T--EEE-----TTS--S--TT--------TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCC
T ss_pred             CCCEEEC----CCCCCccccC--cc--ChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChH
Confidence            4567777    7777777763  44  5677777777777777775542234677777777777776653

>KOG0617|consensus

Probab=97.83  E-value=2.2e-06  Score=59.57  Aligned_cols=63  Identities=27%  Similarity=0.347  Sum_probs=40.8

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.+.+    ++|.++-+|++.-.   +.+|+.+++.+|+|+.++.. .+.+++|+.|+++.|++..+|.
T Consensus        34 ~ITrLtL----SHNKl~~vppnia~---l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lpr   96 (264)
T KOG0617|consen   34 NITRLTL----SHNKLTVVPPNIAE---LKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPR   96 (264)
T ss_pred             hhhhhhc----ccCceeecCCcHHH---hhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCcc
Confidence            5556666    77777777766643   66666777777777666555 4566666666666666665554

>PLN03150 hypothetical protein; Provisional

Probab=97.75  E-value=3.7e-05  Score=61.77  Aligned_cols=61  Identities=20%  Similarity=0.223  Sum_probs=42.3

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH  104 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~  104 (110)
                      .++.|++    ++|.+....+..+.  .+++|+.|++++|+++...|..+..+++|+.|+|++|.++
T Consensus       443 ~L~~L~L----s~N~l~g~iP~~~~--~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~  503 (623)
T PLN03150        443 HLQSINL----SGNSIRGNIPPSLG--SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS  503 (623)
T ss_pred             CCCEEEC----CCCcccCcCChHHh--CCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence            5566677    77777644444455  5677777777777777666666777777888888777765

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.72  E-value=5.1e-05  Score=62.97  Aligned_cols=73  Identities=19%  Similarity=0.271  Sum_probs=45.8

Q ss_pred             ccccCceeEEEEeeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCc-ccCcccccCCcCCcEEeCCCCCCc
Q psy17697         26 NTWLSVGKHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNIT-DIDPDAFSGLGILIELDLTKNRIH  104 (110)
Q Consensus        26 c~~~~~~~~~~l~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~-~i~~~~f~~l~~L~~l~Ls~N~l~  104 (110)
                      |.|.++.|...-.++.+++    ++|.+....+..|.  .+++|+.|++++|.++ .++...|..+.+|+.|++++|.++
T Consensus        58 c~w~gv~c~~~~~v~~L~L----~~~~i~~~~~~~~~--~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~  131 (968)
T PLN00113         58 CLWQGITCNNSSRVVSIDL----SGKNISGKISSAIF--RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT  131 (968)
T ss_pred             CcCcceecCCCCcEEEEEe----cCCCccccCChHHh--CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccc
Confidence            7888877753224556666    66666665555565  5666777777777665 344454556666666666666654

>PLN03150 hypothetical protein; Provisional

Probab=97.69  E-value=0.00011  Score=59.13  Aligned_cols=74  Identities=18%  Similarity=0.238  Sum_probs=62.0

Q ss_pred             ccccCceeEEE-----EeeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCC
Q psy17697         26 NTWLSVGKHHA-----LAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  100 (110)
Q Consensus        26 c~~~~~~~~~~-----l~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~  100 (110)
                      |.|.++.|...     ..++.|++    ++|.+....+..+.  .+++|+.|++++|.++...|..+..+++|+.|+|++
T Consensus       402 ~~w~Gv~C~~~~~~~~~~v~~L~L----~~n~L~g~ip~~i~--~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~  475 (623)
T PLN03150        402 HPWSGADCQFDSTKGKWFIDGLGL----DNQGLRGFIPNDIS--KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY  475 (623)
T ss_pred             cccccceeeccCCCCceEEEEEEC----CCCCccccCCHHHh--CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCC
Confidence            57888888532     25778999    99999876666666  689999999999999977777789999999999999


Q ss_pred             CCCcc
Q psy17697        101 NRIHT  105 (110)
Q Consensus       101 N~l~~  105 (110)
                      |.++.
T Consensus       476 N~lsg  480 (623)
T PLN03150        476 NSFNG  480 (623)
T ss_pred             CCCCC
Confidence            99984

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.58  E-value=4.4e-05  Score=52.44  Aligned_cols=63  Identities=27%  Similarity=0.387  Sum_probs=34.9

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc-ccccCCcCCcEEeCCCCCCccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~-~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      .++.|.+    ++|.|+.+......  .+++|+.|++++|+|..+.. ..+..+++|+.|++.+|.+..-
T Consensus        65 ~L~~L~L----~~N~I~~i~~~l~~--~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   65 RLKTLDL----SNNRISSISEGLDK--NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             T--EEE------SS---S-CHHHHH--H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             hhhhccc----CCCCCCccccchHH--hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence            8889999    99999999765444  47899999999999988766 5677899999999999998753

>KOG1259|consensus

Probab=97.57  E-value=1.8e-05  Score=59.15  Aligned_cols=62  Identities=23%  Similarity=0.218  Sum_probs=54.1

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++++++    ++|.|+.+...+-   -.+.++.|+++.|+|..+..  +..+++|+.||||+|.++++..
T Consensus       285 ~LtelDL----S~N~I~~iDESvK---L~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~G  346 (490)
T KOG1259|consen  285 ELTELDL----SGNLITQIDESVK---LAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVG  346 (490)
T ss_pred             hhhhccc----cccchhhhhhhhh---hccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhh
Confidence            7888999    9999999988774   37999999999999999966  5678999999999999987654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.52  E-value=0.0001  Score=61.19  Aligned_cols=54  Identities=24%  Similarity=0.370  Sum_probs=27.4

Q ss_pred             CCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCc
Q psy17697         49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH  104 (110)
Q Consensus        49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~  104 (110)
                      ++|.+....+..+.  .+++|+.|++++|.++...|..|..+++|+.|++++|.++
T Consensus       507 s~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  560 (968)
T PLN00113        507 SENKLSGEIPDELS--SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS  560 (968)
T ss_pred             cCCcceeeCChHHc--CccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccc
Confidence            44444443333333  3455555555555555555555555555555555555554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.44  E-value=0.0001  Score=39.42  Aligned_cols=39  Identities=38%  Similarity=0.602  Sum_probs=32.0

Q ss_pred             eeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc
Q psy17697         39 ARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP   84 (110)
Q Consensus        39 l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~   84 (110)
                      +++|++    ++|.|+.+|+. +.  .+++|+.+++++|+++.+++
T Consensus         3 L~~L~l----~~N~i~~l~~~-l~--~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    3 LEELDL----SNNQITDLPPE-LS--NLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             -SEEEE----TSSS-SSHGGH-GT--TCTTSSEEEETSSCCSBEGG
T ss_pred             ceEEEc----cCCCCcccCch-Hh--CCCCCCEEEecCCCCCCCcC
Confidence            678999    99999999874 45  58999999999999997743

...

>KOG0444|consensus

Probab=97.22  E-value=5.7e-05  Score=61.27  Aligned_cols=61  Identities=30%  Similarity=0.440  Sum_probs=55.2

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT  105 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~  105 (110)
                      +..+|.+    ++|+|..||...|.  .++.|..|+|++|.+..++|+ ...+..|+.|.|++|.+..
T Consensus       127 n~iVLNL----S~N~IetIPn~lfi--nLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~h  187 (1255)
T KOG0444|consen  127 NSIVLNL----SYNNIETIPNSLFI--NLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNH  187 (1255)
T ss_pred             CcEEEEc----ccCccccCCchHHH--hhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCCChhhH
Confidence            6778999    99999999999999  789999999999999999998 5778899999999997654

>KOG0618|consensus

Probab=97.22  E-value=3.3e-05  Score=64.13  Aligned_cols=57  Identities=21%  Similarity=0.250  Sum_probs=29.2

Q ss_pred             CCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .+|.+..-.-.++.  ++.+|+.|+|++|++..++...+..+..|++|+||||+++++|
T Consensus       367 anN~Ltd~c~p~l~--~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp  423 (1081)
T KOG0618|consen  367 ANNHLTDSCFPVLV--NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP  423 (1081)
T ss_pred             hcCcccccchhhhc--cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh
Confidence            44444443333333  4455555555555555555555555555555555555555544

>KOG0617|consensus

Probab=97.20  E-value=6.6e-05  Score=52.30  Aligned_cols=60  Identities=28%  Similarity=0.335  Sum_probs=52.2

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT  105 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~  105 (110)
                      +++.+.+    .+|+++++|...-.   ++.|+.+++..|.+..++.+ |+.++.|+.|||+.|.++.
T Consensus        57 nlevln~----~nnqie~lp~~iss---l~klr~lnvgmnrl~~lprg-fgs~p~levldltynnl~e  116 (264)
T KOG0617|consen   57 NLEVLNL----SNNQIEELPTSISS---LPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYNNLNE  116 (264)
T ss_pred             hhhhhhc----ccchhhhcChhhhh---chhhhheecchhhhhcCccc-cCCCchhhhhhcccccccc
Confidence            7888899    99999999998864   88999999999998877655 8999999999999998763

>KOG0472|consensus

Probab=97.05  E-value=6.9e-05  Score=57.77  Aligned_cols=56  Identities=32%  Similarity=0.443  Sum_probs=27.4

Q ss_pred             CCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      +.|+|+.+|+....  .+.++..+++.+|+++..+.. .--+++|..||+|+|.|+.+|
T Consensus       236 g~N~i~~lpae~~~--~L~~l~vLDLRdNklke~Pde-~clLrsL~rLDlSNN~is~Lp  291 (565)
T KOG0472|consen  236 GENQIEMLPAEHLK--HLNSLLVLDLRDNKLKEVPDE-ICLLRSLERLDLSNNDISSLP  291 (565)
T ss_pred             cccHHHhhHHHHhc--ccccceeeeccccccccCchH-HHHhhhhhhhcccCCccccCC
Confidence            44444444444444  345555555555555555443 223445555555555555544

>KOG4579|consensus

Probab=96.84  E-value=0.00021  Score=47.97  Aligned_cols=63  Identities=17%  Similarity=0.255  Sum_probs=46.7

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      +++.+.+    ++|.++..|+..-.  -++.+..+++.+|.|+.++.. +...+.|+.+++..|.+...|
T Consensus        54 el~~i~l----s~N~fk~fp~kft~--kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p  116 (177)
T KOG4579|consen   54 ELTKISL----SDNGFKKFPKKFTI--KFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEP  116 (177)
T ss_pred             eEEEEec----ccchhhhCCHHHhh--ccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccch
Confidence            6667777    88888877776555  356677778888888888766 777778888888888776654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.81  E-value=0.002  Score=53.08  Aligned_cols=38  Identities=26%  Similarity=0.201  Sum_probs=21.4

Q ss_pred             cccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         68 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        68 ~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      +|+.|++++|+++.++...   ..+|+.|++++|+++.+|.
T Consensus       263 ~L~~L~Ls~N~L~~LP~~l---~~sL~~L~Ls~N~Lt~LP~  300 (754)
T PRK15370        263 ALQSLDLFHNKISCLPENL---PEELRYLSVYDNSIRTLPA  300 (754)
T ss_pred             CCCEEECcCCccCcccccc---CCCCcEEECCCCccccCcc
Confidence            4555666666666554331   1356666666666666553

>KOG0472|consensus

Probab=96.78  E-value=0.00018  Score=55.56  Aligned_cols=51  Identities=24%  Similarity=0.391  Sum_probs=30.1

Q ss_pred             ccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCc
Q psy17697         51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH  104 (110)
Q Consensus        51 n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~  104 (110)
                      |++..+++....  ++.+|..+++.+|.+..|+|. ...+.+|++|.+.+|.+.
T Consensus       491 nqi~~vd~~~l~--nm~nL~tLDL~nNdlq~IPp~-LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  491 NQIGSVDPSGLK--NMRNLTTLDLQNNDLQQIPPI-LGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccccChHHhh--hhhhcceeccCCCchhhCChh-hccccceeEEEecCCccC
Confidence            444444444333  456666666666666666655 566666666666666665

>KOG1644|consensus

Probab=96.69  E-value=0.0017  Score=45.92  Aligned_cols=61  Identities=38%  Similarity=0.451  Sum_probs=46.3

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      ....+++    +.|.+..++.  |.  .++.|++|.+.+|.|+.|.+..-..++.|..|.|++|.|..+
T Consensus        43 ~~d~iDL----tdNdl~~l~~--lp--~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l  103 (233)
T KOG1644|consen   43 QFDAIDL----TDNDLRKLDN--LP--HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL  103 (233)
T ss_pred             ccceecc----cccchhhccc--CC--CccccceEEecCCcceeeccchhhhccccceEEecCcchhhh
Confidence            4556777    8887776554  55  578888888888888888887656677888888888887765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.68  E-value=0.0027  Score=52.40  Aligned_cols=37  Identities=24%  Similarity=0.355  Sum_probs=20.6

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDID   83 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~   83 (110)
                      .++.|++    ++|.++.+|...+     .+|+.|++++|+++.++
T Consensus       200 ~L~~L~L----s~N~LtsLP~~l~-----~nL~~L~Ls~N~LtsLP  236 (754)
T PRK15370        200 QITTLIL----DNNELKSLPENLQ-----GNIKTLYANSNQLTSIP  236 (754)
T ss_pred             CCcEEEe----cCCCCCcCChhhc-----cCCCEEECCCCccccCC
Confidence            4556666    6666666665443     24555555555555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.57  E-value=0.00069  Score=50.94  Aligned_cols=56  Identities=38%  Similarity=0.475  Sum_probs=26.6

Q ss_pred             CCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      ++|.+..++....   .+++|+.|++++|+++.+++. ....+.|..+++++|+++.+|.
T Consensus       148 ~~N~i~~l~~~~~---~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~  203 (394)
T COG4886         148 SDNKIESLPSPLR---NLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNKISDLPP  203 (394)
T ss_pred             cccchhhhhhhhh---ccccccccccCCchhhhhhhh-hhhhhhhhheeccCCccccCch
Confidence            5555554432221   244555555555555555443 1234455555555555555543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.43  E-value=0.0064  Score=50.41  Aligned_cols=55  Identities=25%  Similarity=0.277  Sum_probs=28.6

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      .++.|.+    .+|.++.+|.      ..++|+.|++++|+++.++..    .++|+.|++++|.++.+
T Consensus       223 ~L~~L~L----~~N~Lt~LP~------lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~L  277 (788)
T PRK15387        223 HITTLVI----PDNNLTSLPA------LPPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTHL  277 (788)
T ss_pred             CCCEEEc----cCCcCCCCCC------CCCCCcEEEecCCccCcccCc----ccccceeeccCCchhhh
Confidence            3455555    5555555553      135566777777777666432    23444444444444433

>KOG0618|consensus

Probab=96.37  E-value=0.00036  Score=58.19  Aligned_cols=62  Identities=29%  Similarity=0.400  Sum_probs=46.7

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcc---------------------cccCCcCCcEE
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPD---------------------AFSGLGILIEL   96 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~---------------------~f~~l~~L~~l   96 (110)
                      +++.|.+    +.|+|..+|+..+.  .+..|+.|++++|.++.++..                     .+..+++|+.+
T Consensus       384 hLKVLhL----syNrL~~fpas~~~--kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~l  457 (1081)
T KOG0618|consen  384 HLKVLHL----SYNRLNSFPASKLR--KLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVL  457 (1081)
T ss_pred             ceeeeee----cccccccCCHHHHh--chHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEE
Confidence            8888999    99999999998888  688899999999988886522                     13345566666


Q ss_pred             eCCCCCCcc
Q psy17697         97 DLTKNRIHT  105 (110)
Q Consensus        97 ~Ls~N~l~~  105 (110)
                      |++.|.++.
T Consensus       458 DlS~N~L~~  466 (1081)
T KOG0618|consen  458 DLSCNNLSE  466 (1081)
T ss_pred             ecccchhhh
Confidence            666666554

>KOG4579|consensus

Probab=96.37  E-value=0.00018  Score=48.28  Aligned_cols=68  Identities=15%  Similarity=0.154  Sum_probs=54.2

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG  109 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~  109 (110)
                      ++..+++    +++.+.++++.++.-....+|+.+++++|.++..++..-..++.++.+++++|.|+.+|++
T Consensus        28 E~h~ldL----ssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE   95 (177)
T KOG4579|consen   28 ELHFLDL----SSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE   95 (177)
T ss_pred             Hhhhccc----ccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH
Confidence            4556778    8888888888766411456788899999999999888555667899999999999999863

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.29  E-value=0.0032  Score=52.12  Aligned_cols=37  Identities=16%  Similarity=0.189  Sum_probs=23.0

Q ss_pred             cccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697         68 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT  105 (110)
Q Consensus        68 ~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~  105 (110)
                      +|+.|++++|+++.++.. +..+++|..++|++|.++.
T Consensus       423 ~L~~L~Ls~NqLt~LP~s-l~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        423 GLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             hhhhhhhccCcccccChH-HhhccCCCeEECCCCCCCc
Confidence            345556666666655433 5566777777777777653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.24  E-value=0.0026  Score=27.19  Aligned_cols=16  Identities=44%  Similarity=0.607  Sum_probs=8.4

Q ss_pred             CCcEEeCCCCCCcccc
Q psy17697         92 ILIELDLTKNRIHTLH  107 (110)
Q Consensus        92 ~L~~l~Ls~N~l~~l~  107 (110)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            5667777777776665

...

>KOG1644|consensus

Probab=96.03  E-value=0.0068  Score=42.96  Aligned_cols=62  Identities=26%  Similarity=0.308  Sum_probs=53.3

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc-ccccCCcCCcEEeCCCCCCcc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHT  105 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~-~~f~~l~~L~~l~Ls~N~l~~  105 (110)
                      .+..|.+    ..|.|..|.+..-.  .+++++.|.+.+|+|..+.. +.+..+++|+.|.+-+|.++.
T Consensus        65 rL~tLll----~nNrIt~I~p~L~~--~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~  127 (233)
T KOG1644|consen   65 RLHTLLL----NNNRITRIDPDLDT--FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH  127 (233)
T ss_pred             ccceEEe----cCCcceeeccchhh--hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhc
Confidence            7888999    99999999998776  57889999999999888654 456788999999999998765

>KOG0532|consensus

Probab=95.96  E-value=0.0013  Score=52.68  Aligned_cols=63  Identities=32%  Similarity=0.468  Sum_probs=54.0

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG  109 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~  109 (110)
                      .++.+++    +.|+++.+|...+.   ++ |+.+.+++|+++.++... ..++.|.++|.+.|.+.++|++
T Consensus       122 ~lt~l~l----s~NqlS~lp~~lC~---lp-Lkvli~sNNkl~~lp~~i-g~~~tl~~ld~s~nei~slpsq  184 (722)
T KOG0532|consen  122 ALTFLDL----SSNQLSHLPDGLCD---LP-LKVLIVSNNKLTSLPEEI-GLLPTLAHLDVSKNEIQSLPSQ  184 (722)
T ss_pred             HHHHhhh----ccchhhcCChhhhc---Cc-ceeEEEecCccccCCccc-ccchhHHHhhhhhhhhhhchHH
Confidence            6777889    99999999999986   44 889999999999998874 5788999999999999988763

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.94  E-value=0.0028  Score=28.72  Aligned_cols=18  Identities=28%  Similarity=0.362  Sum_probs=12.5

Q ss_pred             CCcEEeCCCCCCccccCC
Q psy17697         92 ILIELDLTKNRIHTLHPG  109 (110)
Q Consensus        92 ~L~~l~Ls~N~l~~l~~~  109 (110)
                      +|++|++++|.++.+|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             TESEEEETSSEESEEGTT
T ss_pred             CccEEECCCCcCEeCChh
Confidence            366777777777777653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.82  E-value=0.0058  Score=45.97  Aligned_cols=64  Identities=31%  Similarity=0.329  Sum_probs=53.7

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcc-cccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLV-NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG  109 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~-~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~  109 (110)
                      .++.+.+    ..|.+..+++....   .. +|+.+++++|++..++.. ...++.|+.|+++.|+++.++..
T Consensus       117 ~l~~L~l----~~n~i~~i~~~~~~---~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~  181 (394)
T COG4886         117 NLTSLDL----DNNNITDIPPLIGL---LKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKL  181 (394)
T ss_pred             ceeEEec----CCcccccCcccccc---chhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhh
Confidence            5778888    99999999988754   43 899999999999998533 46789999999999999998763

>KOG0531|consensus

Probab=95.81  E-value=0.0054  Score=46.88  Aligned_cols=62  Identities=32%  Similarity=0.352  Sum_probs=44.2

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.+++    ..|.|..+... ..  .+++|+.+++++|.|+.+.+-  ..++.|+.|++++|.|+.+..
T Consensus        96 ~l~~l~l----~~n~i~~i~~~-l~--~~~~L~~L~ls~N~I~~i~~l--~~l~~L~~L~l~~N~i~~~~~  157 (414)
T KOG0531|consen   96 SLEALDL----YDNKIEKIENL-LS--SLVNLQVLDLSFNKITKLEGL--STLTLLKELNLSGNLISDISG  157 (414)
T ss_pred             ceeeeec----cccchhhcccc-hh--hhhcchheeccccccccccch--hhccchhhheeccCcchhccC
Confidence            6667777    88888887763 12  367788888888888887553  345568888888888877653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.77  E-value=0.0071  Score=28.24  Aligned_cols=18  Identities=44%  Similarity=0.661  Sum_probs=12.8

Q ss_pred             cCCcEEeCCCCCCccccC
Q psy17697         91 GILIELDLTKNRIHTLHP  108 (110)
Q Consensus        91 ~~L~~l~Ls~N~l~~l~~  108 (110)
                      ++|+.|+|++|+|+.+|+
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            466777777777777765

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.77  E-value=0.0071  Score=28.24  Aligned_cols=18  Identities=44%  Similarity=0.661  Sum_probs=12.8

Q ss_pred             cCCcEEeCCCCCCccccC
Q psy17697         91 GILIELDLTKNRIHTLHP  108 (110)
Q Consensus        91 ~~L~~l~Ls~N~l~~l~~  108 (110)
                      ++|+.|+|++|+|+.+|+
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            466777777777777765

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.68  E-value=0.0088  Score=27.91  Aligned_cols=22  Identities=32%  Similarity=0.560  Sum_probs=18.1

Q ss_pred             ccccEEeccCCCCcccCccccc
Q psy17697         67 VNLHNLLLKDCNITDIDPDAFS   88 (110)
Q Consensus        67 ~~L~~l~l~~n~l~~i~~~~f~   88 (110)
                      ++|+.|++++|+++.+++.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            5688889999999998888764

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.68  E-value=0.0088  Score=27.91  Aligned_cols=22  Identities=32%  Similarity=0.560  Sum_probs=18.1

Q ss_pred             ccccEEeccCCCCcccCccccc
Q psy17697         67 VNLHNLLLKDCNITDIDPDAFS   88 (110)
Q Consensus        67 ~~L~~l~l~~n~l~~i~~~~f~   88 (110)
                      ++|+.|++++|+++.+++.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            5688889999999998888764

>KOG1259|consensus

Probab=95.52  E-value=0.0052  Score=46.29  Aligned_cols=38  Identities=26%  Similarity=0.175  Sum_probs=29.4

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDID   83 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~   83 (110)
                      .++.+++    ++|.|..+..-.    .+.+|+.|++++|.++.+.
T Consensus       308 kir~L~l----S~N~i~~v~nLa----~L~~L~~LDLS~N~Ls~~~  345 (490)
T KOG1259|consen  308 KLRRLIL----SQNRIRTVQNLA----ELPQLQLLDLSGNLLAECV  345 (490)
T ss_pred             ceeEEec----cccceeeehhhh----hcccceEeecccchhHhhh
Confidence            7788888    888888887743    4678888888888777654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.50  E-value=0.0058  Score=27.65  Aligned_cols=17  Identities=35%  Similarity=0.378  Sum_probs=10.3

Q ss_pred             ccEEeccCCCCcccCcc
Q psy17697         69 LHNLLLKDCNITDIDPD   85 (110)
Q Consensus        69 L~~l~l~~n~l~~i~~~   85 (110)
                      |+.|++++|+++.+++.
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            55666666666655554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.79  E-value=0.061  Score=33.77  Aligned_cols=56  Identities=21%  Similarity=0.425  Sum_probs=28.3

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN  101 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N  101 (110)
                      .++.+.+    ..+ +..++...|.  +...++.+.+.. .+..+....|....+++.+++..+
T Consensus        36 ~l~~i~~----~~~-~~~i~~~~F~--~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~   91 (129)
T PF13306_consen   36 SLKSINF----PNN-LTSIGDNAFS--NCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN   91 (129)
T ss_dssp             T-SEEEE----SST-TSCE-TTTTT--T-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred             ccccccc----ccc-ccccceeeee--cccccccccccc-cccccccccccccccccccccCcc
Confidence            3445555    443 6666666666  444566666654 555555566666666666666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.66  E-value=0.067  Score=33.59  Aligned_cols=60  Identities=18%  Similarity=0.352  Sum_probs=39.3

Q ss_pred             eeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         39 ARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        39 l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      ++.+.+    . +.+..+....|.  +...++.+.+..+ +..+...+|..+.+++.+.+.+ .+..++
T Consensus        14 l~~i~~----~-~~~~~I~~~~F~--~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~   73 (129)
T PF13306_consen   14 LESITF----P-NTIKKIGENAFS--NCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIG   73 (129)
T ss_dssp             --EEEE----T-ST--EE-TTTTT--T-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-
T ss_pred             CCEEEE----C-CCeeEeChhhcc--ccccccccccccc-ccccceeeeecccccccccccc-cccccc
Confidence            566777    5 468889999999  7778999999885 9999999999998899999975 444443

>KOG0531|consensus

Probab=94.57  E-value=0.016  Score=44.37  Aligned_cols=61  Identities=34%  Similarity=0.363  Sum_probs=49.2

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.+++    ++|.|..+..-.    .++.|+.|++.+|.|+.+..  |..+..|+.+++++|.+..+.+
T Consensus       119 ~L~~L~l----s~N~I~~i~~l~----~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  119 NLQVLDL----SFNKITKLEGLS----TLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             cchheec----cccccccccchh----hccchhhheeccCcchhccC--CccchhhhcccCCcchhhhhhh
Confidence            6788899    999999887655    35679999999999988844  3458889999999998887754

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=93.63  E-value=0.05  Score=25.84  Aligned_cols=18  Identities=28%  Similarity=0.447  Sum_probs=14.6

Q ss_pred             cCCcEEeCCCCCCccccC
Q psy17697         91 GILIELDLTKNRIHTLHP  108 (110)
Q Consensus        91 ~~L~~l~Ls~N~l~~l~~  108 (110)
                      ++|+.|++++|+++++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            467888888888888875

>KOG1859|consensus

Probab=93.39  E-value=0.012  Score=48.78  Aligned_cols=59  Identities=25%  Similarity=0.305  Sum_probs=30.5

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT  105 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~  105 (110)
                      .++.|++    ++|.+..+.  ...  .+++|+.|+|++|.++.++.-...++. |+.|.+.+|.+++
T Consensus       188 ale~LnL----shNk~~~v~--~Lr--~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t  246 (1096)
T KOG1859|consen  188 ALESLNL----SHNKFTKVD--NLR--RLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT  246 (1096)
T ss_pred             Hhhhhcc----chhhhhhhH--HHH--hcccccccccccchhccccccchhhhh-heeeeecccHHHh
Confidence            5555666    666666554  222  356666666666666665433222322 4444555554444

>KOG4658|consensus

Probab=93.28  E-value=0.048  Score=45.98  Aligned_cols=64  Identities=27%  Similarity=0.334  Sum_probs=40.2

Q ss_pred             eeeEEEEeeCCCCcc--CCCCCcCccCccCcccccEEeccCC-CCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNN--IPHLPADAFRSTGLVNLHNLLLKDC-NITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~--l~~~~~~~f~~~~~~~L~~l~l~~n-~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      ++++|-+    ..|.  +..++...|.  .++.|..|++++| .+..++.. .+.+-+|++|++++..++.+|.
T Consensus       546 ~L~tLll----~~n~~~l~~is~~ff~--~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP~  612 (889)
T KOG4658|consen  546 KLRTLLL----QRNSDWLLEISGEFFR--SLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLPS  612 (889)
T ss_pred             ccceEEE----eecchhhhhcCHHHHh--hCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccch
Confidence            4556666    5654  5666666666  5677777777765 34445333 4556667777777777776664

>KOG3207|consensus

Probab=93.05  E-value=0.066  Score=41.89  Aligned_cols=65  Identities=22%  Similarity=0.233  Sum_probs=46.3

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcc-c-----ccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPD-A-----FSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~-~-----f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .+++|++    ++|.+...+...-.+ .++.|..++++.+++..+.-. .     ...+++|++|+++.|+|...+
T Consensus       247 ~L~~LdL----s~N~li~~~~~~~~~-~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~  317 (505)
T KOG3207|consen  247 TLQELDL----SNNNLIDFDQGYKVG-TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR  317 (505)
T ss_pred             HHhhccc----cCCcccccccccccc-cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence            6778888    888888777555442 367777788888887776532 1     255788999999999885543

>PLN03210 Resistant to P

Probab=92.27  E-value=0.42  Score=41.35  Aligned_cols=55  Identities=24%  Similarity=0.310  Sum_probs=28.0

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCC-CCcccCcccccCCcCCcEEeCCCC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDC-NITDIDPDAFSGLGILIELDLTKN  101 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n-~l~~i~~~~f~~l~~L~~l~Ls~N  101 (110)
                      ++..|++    .+|.+..++.+. .  .+++|+.++++++ .++.++ . +..+++|+.|+++++
T Consensus       612 ~L~~L~L----~~s~l~~L~~~~-~--~l~~Lk~L~Ls~~~~l~~ip-~-ls~l~~Le~L~L~~c  667 (1153)
T PLN03210        612 NLVKLQM----QGSKLEKLWDGV-H--SLTGLRNIDLRGSKNLKEIP-D-LSMATNLETLKLSDC  667 (1153)
T ss_pred             CCcEEEC----cCcccccccccc-c--cCCCCCEEECCCCCCcCcCC-c-cccCCcccEEEecCC
Confidence            3444555    555555554443 2  3555666666554 244442 2 445566666666654

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=92.27  E-value=0.28  Score=42.44  Aligned_cols=41  Identities=27%  Similarity=0.512  Sum_probs=19.7

Q ss_pred             cccccEEeccCC-CCcccCcccccCCcCCcEEeCCCC-CCcccc
Q psy17697         66 LVNLHNLLLKDC-NITDIDPDAFSGLGILIELDLTKN-RIHTLH  107 (110)
Q Consensus        66 ~~~L~~l~l~~n-~l~~i~~~~f~~l~~L~~l~Ls~N-~l~~l~  107 (110)
                      +++|+.|+++++ .+..++. .+..+.+|+.|+++++ .++.+|
T Consensus       656 l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp  698 (1153)
T PLN03210        656 ATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILP  698 (1153)
T ss_pred             CCcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCcCccC
Confidence            455555555554 2333322 2455555555555553 344444

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=92.19  E-value=0.065  Score=38.63  Aligned_cols=38  Identities=26%  Similarity=0.288  Sum_probs=17.2

Q ss_pred             ccccEEeccCCCCcccC----cccccCCcCCcEEeCCCCCCc
Q psy17697         67 VNLHNLLLKDCNITDID----PDAFSGLGILIELDLTKNRIH  104 (110)
Q Consensus        67 ~~L~~l~l~~n~l~~i~----~~~f~~l~~L~~l~Ls~N~l~  104 (110)
                      ++|+.+++++|.++.-.    ...+..+++|+.|++++|.++
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            34555555555544210    112333445555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=92.05  E-value=0.069  Score=38.50  Aligned_cols=38  Identities=29%  Similarity=0.377  Sum_probs=22.4

Q ss_pred             ccccEEeccCCCCcccCc----ccccCCcCCcEEeCCCCCCc
Q psy17697         67 VNLHNLLLKDCNITDIDP----DAFSGLGILIELDLTKNRIH  104 (110)
Q Consensus        67 ~~L~~l~l~~n~l~~i~~----~~f~~l~~L~~l~Ls~N~l~  104 (110)
                      ++|+.+++++|.++....    ..+..+++|+.|++++|.++
T Consensus       193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            466666776666654322    12344566777777777665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1859|consensus

Probab=91.56  E-value=0.036  Score=46.08  Aligned_cols=61  Identities=26%  Similarity=0.354  Sum_probs=49.0

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      ++..|++    +.|.+.++|.-.-.  + ..|+.|.+++|-++.+..  ...+.+|+.||++.|.|+.+.
T Consensus       210 ~LkhLDl----syN~L~~vp~l~~~--g-c~L~~L~lrnN~l~tL~g--ie~LksL~~LDlsyNll~~hs  270 (1096)
T KOG1859|consen  210 KLKHLDL----SYNCLRHVPQLSMV--G-CKLQLLNLRNNALTTLRG--IENLKSLYGLDLSYNLLSEHS  270 (1096)
T ss_pred             ccccccc----ccchhccccccchh--h-hhheeeeecccHHHhhhh--HHhhhhhhccchhHhhhhcch
Confidence            7888999    99999999975544  2 349999999999888743  357888999999999887654

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=91.22  E-value=0.22  Score=23.53  Aligned_cols=16  Identities=44%  Similarity=0.640  Sum_probs=9.7

Q ss_pred             cCCcEEeCCCCCCccc
Q psy17697         91 GILIELDLTKNRIHTL  106 (110)
Q Consensus        91 ~~L~~l~Ls~N~l~~l  106 (110)
                      .+|+.|++++|+|+++
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            3566666666666554

>KOG0532|consensus

Probab=90.94  E-value=0.055  Score=43.73  Aligned_cols=54  Identities=24%  Similarity=0.330  Sum_probs=31.7

Q ss_pred             CCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      ..|++..+|.....   + .|..++++.|++..|+-. |..++.|++|.|.+|.+++-|
T Consensus       197 rRn~l~~lp~El~~---L-pLi~lDfScNkis~iPv~-fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  197 RRNHLEDLPEELCS---L-PLIRLDFSCNKISYLPVD-FRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             hhhhhhhCCHHHhC---C-ceeeeecccCceeecchh-hhhhhhheeeeeccCCCCCCh
Confidence            44444444444332   2 255667777777776544 666777777777777666543

>KOG4658|consensus

Probab=90.43  E-value=0.13  Score=43.37  Aligned_cols=57  Identities=33%  Similarity=0.442  Sum_probs=48.3

Q ss_pred             eeeEEEEeeCCCCc-cCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCC
Q psy17697         38 AARVLKLKIGEKSN-NIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR  102 (110)
Q Consensus        38 ~l~~l~l~~~~~~n-~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~  102 (110)
                      .+.+|++    ++| .+..+|...-   .+.+|+.|++++..++.+|.. +..+.+|++|++..+.
T Consensus       572 ~LrVLDL----s~~~~l~~LP~~I~---~Li~LryL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~  629 (889)
T KOG4658|consen  572 LLRVLDL----SGNSSLSKLPSSIG---ELVHLRYLDLSDTGISHLPSG-LGNLKKLIYLNLEVTG  629 (889)
T ss_pred             ceEEEEC----CCCCccCcCChHHh---hhhhhhcccccCCCccccchH-HHHHHhhheecccccc
Confidence            7888999    866 6677888774   389999999999999988777 7889999999998775

>KOG2739|consensus

Probab=88.62  E-value=0.33  Score=35.41  Aligned_cols=40  Identities=25%  Similarity=0.171  Sum_probs=24.4

Q ss_pred             CcccccEEeccCC--CCcccCcccccCCcCCcEEeCCCCCCc
Q psy17697         65 GLVNLHNLLLKDC--NITDIDPDAFSGLGILIELDLTKNRIH  104 (110)
Q Consensus        65 ~~~~L~~l~l~~n--~l~~i~~~~f~~l~~L~~l~Ls~N~l~  104 (110)
                      .+++|+.|.++.|  .+..--.-....+++|+++++++|+|+
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            3677888888887  333211111234478888888888765

>KOG3207|consensus

Probab=88.09  E-value=0.044  Score=42.81  Aligned_cols=63  Identities=29%  Similarity=0.337  Sum_probs=39.9

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc-ccccCCcCCcEEeCCCCCCccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~-~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      .+..|++    ..|....+....+.  -+..|+.|+|++|++-..+. .....++.|..|+++.+.++++
T Consensus       223 sl~~L~L----~~N~~~~~~~~~~~--i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si  286 (505)
T KOG3207|consen  223 SLEVLYL----EANEIILIKATSTK--ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASI  286 (505)
T ss_pred             cHHHhhh----hcccccceecchhh--hhhHHhhccccCCcccccccccccccccchhhhhccccCcchh
Confidence            6667777    77643333333333  34568888888887766553 2345667777778888877764

>PRK15386 type III secretion protein GogB; Provisional

Probab=84.86  E-value=1.9  Score=33.77  Aligned_cols=57  Identities=23%  Similarity=0.298  Sum_probs=30.2

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccC-CCCcccCcccccCCcCCcEEeCCCC-CCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKD-CNITDIDPDAFSGLGILIELDLTKN-RIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~-n~l~~i~~~~f~~l~~L~~l~Ls~N-~l~~l~  107 (110)
                      .++.|++    +++.|+.+|  .+.    .+|+.|.+++ +.++.++.. +  .++|+.|.++++ .++.+|
T Consensus        53 ~l~~L~I----s~c~L~sLP--~LP----~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         53 ASGRLYI----KDCDIESLP--VLP----NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             CCCEEEe----CCCCCcccC--CCC----CCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccc
Confidence            5667777    777777776  222    4566666665 344333221 1  234555555555 444443

>TIGR00864 PCC polycystin cation channel protein

Probab=84.78  E-value=0.61  Score=43.59  Aligned_cols=31  Identities=19%  Similarity=0.225  Sum_probs=26.4

Q ss_pred             CCccCCCCCcCccCccCcccccEEeccCCCCcc
Q psy17697         49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITD   81 (110)
Q Consensus        49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~   81 (110)
                      ++|+|+.++.+.|.  .+.+|+.|+|++|.+..
T Consensus         3 SnN~LstLp~g~F~--~L~sL~~LdLsgNPw~C   33 (2740)
T TIGR00864         3 SNNKISTIEEGICA--NLCNLSEIDLSGNPFEC   33 (2740)
T ss_pred             CCCcCCccChHHhc--cCCCceEEEeeCCcccc
Confidence            78999999999998  78889999999887654

Note: this model has been restricted to the amino half because for technical reasons.

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.45  E-value=0.75  Score=20.66  Aligned_cols=14  Identities=43%  Similarity=0.496  Sum_probs=8.4

Q ss_pred             cCCcEEeCCCCCCc
Q psy17697         91 GILIELDLTKNRIH  104 (110)
Q Consensus        91 ~~L~~l~Ls~N~l~  104 (110)
                      ++|+.|++++|.|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            56777777777765

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	110
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-04

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.1 bits (156), Expect = 1e-13
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            NN+  L A+   +  L NLH+LLL   ++  I  +AF  +  L  LDL+ N +HTL   
Sbjct: 48  HNNLSRLRAEWTPT-RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF 106

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.6 bits (134), Expect = 1e-10
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           SN++  L    F    L  L  LLL + +I  +D +AF  +  L +L L++N+I      
Sbjct: 97  SNHLHTLDEFLFS--DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.6 bits (134), Expect = 1e-10
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N++  + ++AF    + NL  L L   ++  +D   FS L  L  L L  N I  +   
Sbjct: 73  HNHLNFISSEAFV--PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN 130

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.6 bits (121), Expect = 7e-09
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSG---LGILIELDLTKNRIHTL 106
           +N+I  +  +AF    +  L  L L    I+    +       L  L+ LDL+ N++  L
Sbjct: 121 NNHIVVVDRNAFE--DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178

Query: 107 HPG 109
              
Sbjct: 179 PLT 181

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.5 bits (152), Expect = 5e-13
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N+ P +   +F   GL +L  L + +  ++ I+ +AF GL  L+EL+L  N + +L   
Sbjct: 227 GNHFPEIRPGSFH--GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 61.3 bits (149), Expect = 1e-12
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            NNI  + AD FR   L +L  L L   +I  I+  AF+GL  L  L+L  N +  +  G
Sbjct: 84  ENNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSG 141

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.0 bits (143), Expect = 9e-12
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N+I  +   AF   GL +L+ L L D  +T I   AF  L  L EL L  N I ++   
Sbjct: 108 RNSIRQIEVGAFN--GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY 165

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.5 bits (134), Expect = 1e-10
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDAFSGLGILIELDLTKNRIHTLH 107
           +N I  +P+ AF    + +L  L L +   +  I   AF GL  L  L+L    I  + 
Sbjct: 156 NNPIESIPSYAFN--RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.8 bits (132), Expect = 3e-10
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK-NRIHTLHP 108
            N +  +P+ AF    L  L  L L++  I  I   AF+ +  L+ LDL +  ++  +  
Sbjct: 132 DNWLTVIPSGAFE--YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 109 G 109
           G
Sbjct: 190 G 190

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.5 bits (121), Expect = 9e-09
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
             NI  +P        LV L  L +   +  +I P +F GL  L +L +  +++  +   
Sbjct: 205 MCNIKDMPNLT----PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.8 bits (114), Expect = 8e-08
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
              +  +P     +T  +NL        NI  I  D F  L  L  L L +N I  +  G
Sbjct: 63  RRGLSEVPQGIPSNTRYLNLME-----NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG 117

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
           ++ +  +  +AF   GL +L  L L   N++ +  D F+ L  L+EL L  N  +
Sbjct: 251 NSQVSLIERNAFD--GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 61.3 bits (148), Expect = 1e-12
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            ++ HL     R  GL  L NL +    +  + PDAF     L  L+L+ N + +L   
Sbjct: 42  QHLQHLELRDLR--GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 39.3 bits (91), Expect = 8e-05
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
            + +  +  DAF       L  L L    +  +      GL  L EL L+ N +H
Sbjct: 65  KSGLRFVAPDAFH--FTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.9 bits (148), Expect = 2e-12
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N I  +  ++F+   L +L  L L   +I  I+  AF+GL  L  L+L  NR+ T+  G
Sbjct: 73  ENQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNG 130

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 60.5 bits (147), Expect = 2e-12
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N++  +   +F+  GL++L  L +    I  I+ +AF  L  L+E++L  N +  L   
Sbjct: 216 GNHLSAIRPGSFQ--GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.4 bits (144), Expect = 6e-12
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N+I  +   AF   GL NL+ L L D  +T I   AF  L  L EL L  N I ++   
Sbjct: 97  RNHIRTIEIGAFN--GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY 154

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.6 bits (129), Expect = 6e-10
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDAFSGLGILIELDLTKNRIHTLH 107
           +N I  +P+ AF    + +L  L L +   ++ I   AF GL  L  L+L    +  + 
Sbjct: 145 NNPIESIPSYAFN--RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.2 bits (128), Expect = 9e-10
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK-NRIHTLHP 108
            N +  +P  AF    L  L  L L++  I  I   AF+ +  L  LDL +  R+  +  
Sbjct: 121 DNRLTTIPNGAFV--YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178

Query: 109 G 109
           G
Sbjct: 179 G 179

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.1 bits (120), Expect = 1e-08
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
             N+  +P        L+ L  L L   +++ I P +F GL  L +L + +++I  +   
Sbjct: 194 MCNLREIPNLT----PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN 249

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.1 bits (112), Expect = 1e-07
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
             N+  +P     +T       L L +  I  I  ++F  L  L  L L++N I T+  G
Sbjct: 52  RKNLREVPDGISTNT-----RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG 106

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
            + I  +  +AF    L +L  + L   N+T +  D F+ L  L  + L  N  +
Sbjct: 240 QSQIQVIERNAFD--NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.6 bits (142), Expect = 1e-11
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
             N+  +P  A R   LV L  L L    I+ I+      L  L E+ L   ++  + P 
Sbjct: 233 HCNLTAVPYLAVR--HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.6 bits (142), Expect = 1e-11
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           SN +  +P   F   GL NL  L + +  I  +    F  L  L  L++  N +  +   
Sbjct: 89  SNRLKLIPLGVFT--GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR 146

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N I  +         L+ L  + L    +  ++P AF GL  L  L+++ N++ TL   
Sbjct: 257 YNPISTIEGSMLH--ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.8 bits (140), Expect = 3e-11
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N++ ++   AF   GL +L  L L+ CN+T I  +A S L  LI L L    I+ +   
Sbjct: 137 DNDLVYISHRAFS--GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.0 bits (138), Expect = 5e-11
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N I  L  D F      +L  L L +  ++ ++P AF+ L  L  L L  NR+  +  G
Sbjct: 41  KNRIKTLNQDEFA--SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG 98

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.0 bits (130), Expect = 5e-10
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N +  +   AF    L NL  L L+   +  I    F+GL  L +LD+++N+I  L   
Sbjct: 65  ENIVSAVEPGAFN--NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDY 122

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.0 bits (130), Expect = 6e-10
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N I  L    F+   L NL +L + D ++  I   AFSGL  L +L L K  + ++   
Sbjct: 113 ENKIVILLDYMFQ--DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.6 bits (124), Expect = 3e-09
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
             +  +  +       +NL +L +  CN+T +   A   L  L  L+L+ N I T+   
Sbjct: 211 PYLDTMTPNCLY---GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 4e-08
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
             N+  +P +A     L  L  L L+  NI  I   +F  L  L  L+++          
Sbjct: 161 KCNLTSIPTEALS--HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
              +  +   AFR  GL  L  L +    +T ++   F  +G L  L L  N + 
Sbjct: 281 GGQLAVVEPYAFR--GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITD-IDPDAFSGLGILIELDLTKNRIHTLHP 108
             NI  +   +F+   L  L  L +      D + P+   GL  L  L +T   +  +  
Sbjct: 185 HLNINAIRDYSFK--RLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPY 241

Query: 109 G 109
            
Sbjct: 242 L 242

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 7e-07
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
                 +P      T       L L    I  ++ D F+    L EL+L +N +  + PG
Sbjct: 20  RKRFVAVPEGIPTET-----RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG 74

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.4 bits (139), Expect = 3e-11
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           +N I ++     +    VNL  L+L    I  I+ D+FS LG L  LDL+ N +  L   
Sbjct: 61  NNRITYISNSDLQ--RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS 118

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.9 bits (122), Expect = 6e-09
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           SN I  +  D+F    L +L +L L    ++++    F  L  L  L+L  N   TL   
Sbjct: 85  SNGINTIEEDSFS--SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET 142

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.6 bits (116), Expect = 4e-08
 Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 2/57 (3%)

Query: 53  IPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
              +    F   GL  L  L +   ++   +P +   +  +  L L   +   L   
Sbjct: 162 FTKIQRKDF--AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 9e-07
 Identities = 7/58 (12%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107
           ++++      +     + N+ +L+L       +          +  L+L    + T H
Sbjct: 183 ASDLQSYEPKSL--KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.0 bits (99), Expect = 8e-06
 Identities = 12/43 (27%), Positives = 17/43 (39%)

Query: 67  VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
             + +L L +  IT I          L  L LT N I+T+   
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 38.9 bits (91), Expect = 8e-05
 Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 50  SNNIPHLPADAFRS-TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
           + +   L      S        N+ + D ++  +     + +  L+EL+ ++N++ ++  
Sbjct: 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSVPD 294

Query: 109 G 109
           G
Sbjct: 295 G 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 28/86 (32%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITD--------------------------ID 83
            N + +L +  F    L +L  L L                                 I 
Sbjct: 109 YNYLSNLSSSWF--KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 84  PDAFSGLGILIELDLTKNRIHTLHPG 109
              F+GL  L EL++  + + +  P 
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPK 192

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.9 bits (138), Expect = 4e-11
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N I  +P  AFR  GL +L  LLL    +  + P AF  LG L+ L L  N +  L   
Sbjct: 162 GNRISSVPERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.5 bits (137), Expect = 5e-11
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N +  LP D FR   L NL +L L    I+ +   AF GL  L  L L +NR+  +HP 
Sbjct: 138 DNALQALPDDTFR--DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.4 bits (134), Expect = 1e-10
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN-RIHTLHP 108
            N I H+PA +FR     NL  L L    +  ID  AF+GL +L +LDL+ N ++ ++ P
Sbjct: 41  GNRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98

Query: 109 G 109
            
Sbjct: 99  A 99

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.4 bits (134), Expect = 1e-10
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
              +  L    FR  GL  L  L L+D  +  +  D F  LG L  L L  NRI ++   
Sbjct: 114 RCGLQELGPGLFR--GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 54.6 bits (132), Expect = 3e-10
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
             +  +    F   GL  LH L L  C + ++ P  F GL  L  L L  N +  L   
Sbjct: 91  AQLRSVDPATFH--GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 101
            N + H+   AFR   L  L  L L   N++ +  +A + L  L  L L  N
Sbjct: 186 QNRVAHVHPHAFR--DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 5/60 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
              +  +P     ++       + L    I+ +   +F     L  L L  N +  +   
Sbjct: 20  QQGLQAVPVGIPAAS-----QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 56.6 bits (137), Expect = 5e-11
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           +N+I  L  D F+  GL +L+ L+L +  I+ I   AFS L  L +L ++KN +  + P 
Sbjct: 63  NNDISELRKDDFK--GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN 120

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N I  +  +         L+ L L    I  I+  + S L  L EL L  N++  +  G
Sbjct: 202 HNKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG 259

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 9/84 (10%)

Query: 26  NTWLSVGKHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPD 85
           N+    G    L    L++        +  +P D         L+ L L    I  I+ +
Sbjct: 161 NSGFEPGAFDGLKLNYLRIS----EAKLTGIPKDLPE-----TLNELHLDHNKIQAIELE 211

Query: 86  AFSGLGILIELDLTKNRIHTLHPG 109
                  L  L L  N+I  +  G
Sbjct: 212 DLLRYSKLYRLGLGHNQIRMIENG 235

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.4 bits (108), Expect = 5e-07
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           +N I  +   AF    L  L  L +   ++ +I P+  S L    EL +  NRI  +  G
Sbjct: 87  NNKISKIHEKAFS--PLRKLQKLYISKNHLVEIPPNLPSSLV---ELRIHDNRIRKVPKG 141

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 8e-07
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N I  +   +     L  L  L L +  ++ + P     L +L  + L  N I  +   
Sbjct: 226 HNQIRMIENGSLS--FLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVGVN 282

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
            N++  +P +        +L  L + D  I  +    FSGL  +  +++  N + 
Sbjct: 111 KNHLVEIPPNLPS-----SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 68  NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           +   L L++ +I+++  D F GL  L  L L  N+I  +H  
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK 96

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 6/59 (10%)

Query: 50  SNNIPHLPADAFRSTG----LVNLHNLLLKDCNIT--DIDPDAFSGLGILIELDLTKNR 102
           +NNI  +  + F   G        + + L +  +   ++ P  F  +   + +     +
Sbjct: 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.2 bits (136), Expect = 6e-11
 Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
              +  L   AF    L +L  L +   N   +D   +  L  L  LD + N I T    
Sbjct: 184 QCQLEQLSPTAFN--SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           +   +   D F    L NL  L L  C +  + P AF+ L  L  L+++ N   +L   
Sbjct: 161 SFQENFLPDIFT--ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 4e-07
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 49  KSNNIPHLPADAFRSTGLVNLHNLLLKDCNIT--DIDPDAFSGLGILIELDLTKNRIHTL 106
           +SN +  LP   F    L  L  L L    ++       +  G   L  LDL+ N + T+
Sbjct: 36  ESNKLQSLPHGVFD--KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 93

Query: 107 HPG 109
              
Sbjct: 94  SSN 96

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 4/62 (6%)

Query: 50  SNNIPHLPA-DAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR-IHTLH 107
            +N+  +     F    L NL  L +   +        F+GL  L  L +  N       
Sbjct: 110 HSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167

Query: 108 PG 109
           P 
Sbjct: 168 PD 169

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
           SN +      +    G  +L  L L    +  +    F GL  L  LD   + +  +  
Sbjct: 61  SNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSE 118

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 3/56 (5%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI-LIELDLTKNRIH 104
            NN   L    ++   L +L  L     +I              L  L+LT+N   
Sbjct: 208 HNNFFSLDTFPYK--CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 5/60 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           S  +  +P          +   L L+   +  +    F  L  L +L L+ N +      
Sbjct: 16  SKGLTSVPTGIP-----SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 56.2 bits (136), Expect = 7e-11
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           +N I  +    F+   L NLH L+L +  I+ I P AF+ L  L  L L+KN++  L   
Sbjct: 61  NNKITEIKDGDFK--NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK 118

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N I  + A + +  GL NL  L L   +I+ +D  + +    L EL L  N++  +  G
Sbjct: 201 GNKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 258

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.5 bits (124), Expect = 3e-09
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
             NI  +P          +L  L L    IT +D  +  GL  L +L L+ N I  +  G
Sbjct: 180 DTNITTIPQGLPP-----SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 7e-08
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITD--IDPDAFSGLGILIELDLTKNRIHTLH 107
            N I  +    F   GL  +  + L    +    I+  AF G+  L  + +    I T+ 
Sbjct: 130 ENEITKVRKSVF--NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187

Query: 108 PG 109
            G
Sbjct: 188 QG 189

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107
            N +  LP    +      L  L + +  IT +    F+GL  +I ++L  N + +  
Sbjct: 109 KNQLKELPEKMPK-----TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.4 bits (108), Expect = 5e-07
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N+I  +   +       +L  L L +  +  + P   +    +  + L  N I  +   
Sbjct: 225 FNSISAVDNGSLA--NTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSN 281

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.0 bits (107), Expect = 7e-07
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 50  SNNI--PHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107
           +N +    +   AF+  G+  L  + + D NIT I          L EL L  N+I  + 
Sbjct: 154 TNPLKSSGIENGAFQ--GMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVD 208

Query: 108 PG 109
             
Sbjct: 209 AA 210

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 9e-07
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           +N I  +   AF    LV L  L L    + ++       L    EL + +N I  +   
Sbjct: 85  NNKISKISPGAFA--PLVKLERLYLSKNQLKELPEKMPKTLQ---ELRVHENEITKVRKS 139

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
              +  +P D    T       L L++  IT+I    F  L  L  L L  N+I  + PG
Sbjct: 40  DLGLEKVPKDLPPDT-----ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG 94

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 50  SNNIPHLPADAFRS----TGLVNLHNLLLKDCNI--TDIDPDAFSGLGILIELDLTKNR 102
           +NNI  + ++ F      T   +   + L    +   +I P  F  + +   + L   +
Sbjct: 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.2 bits (131), Expect = 3e-10
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N + HL + +F       L  L L  C I  I+  A+  L  L  L LT N I +L  G
Sbjct: 37  FNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.2 bits (118), Expect = 2e-08
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
            N I  L   AF  +GL +L  L+  + N+  ++      L  L EL++  N I + 
Sbjct: 85  GNPIQSLALGAF--SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.0 bits (115), Expect = 5e-08
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
              I  +   A+    L +L  L+L    I  +   AFSGL  L +L   +  + +L   
Sbjct: 61  RCEIQTIEDGAY--QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 50  SNNIPHLP-ADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGIL----IELDLTKNRIH 104
            N I      + F  + L NL +L L    I  I       L  +    + LDL+ N ++
Sbjct: 133 HNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 105 TLHPG 109
            + PG
Sbjct: 191 FIQPG 195

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 38.8 bits (91), Expect = 8e-05
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 50  SNNIPHLPADAFRSTGLVNL----HNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT 105
           SN I  +     R   L  +     +L L    +  I P AF  +  L EL L  N++ +
Sbjct: 158 SNKIQSIYCTDLR--VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKS 214

Query: 106 LHPG 109
           +  G
Sbjct: 215 VPDG 218

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 38.8 bits (91), Expect = 9e-05
 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 101
            N +  +   AF+      L  L L    +  +    F  L  L ++ L  N
Sbjct: 186 LNPMNFIQPGAFKEI---RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 67  VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            +  NL L    +  +   +F     L  LDL++  I T+  G
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.9 bits (130), Expect = 6e-10
 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N +P +    F    L+NL  L L  C I  I  D F     L  L LT N +  +   
Sbjct: 42  FNVLPTIQNTTFS--RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET 99

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 3e-08
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           +N +  +   A    G   L +L      I+ ID         L  L L  N I ++   
Sbjct: 90  ANPLIFMAETALS--GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 8e-08
 Identities = 12/60 (20%), Positives = 23/60 (38%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
             +   +    F     +++ ++ L+     +I  + F     L ELDLT   +  L  G
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG 296

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
              I  +  D F+      L  L+L    +  +   A SG   L  L   +  I ++   
Sbjct: 66  RCQIYWIHEDTFQ--SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 1e-07
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 50  SNNIPHLPADAFRS-TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
            N+ P        S   L  L  L+L  C+++ ID  AF+ L ++  +DL+ NR+ +   
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

Query: 109 G 109
            
Sbjct: 518 E 518

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 13/60 (21%), Positives = 17/60 (28%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
              I  +            L +L L   +I+ I          L  LD   N IH L   
Sbjct: 114 QTGISSIDFIPLH--NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           +   ++ ++ F       L  L L   +++++ P    GL  L +L L+ N+   L   
Sbjct: 264 HYFFNISSNTFH--CFSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFENLCQI 319

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 12/59 (20%), Positives = 20/59 (33%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
            ++I        +   L +L +L L       +  +AF     L  LDL   R+     
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 8e-07
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
             ++  +   AF    L  ++++ L    +T    +A S L  +  L+L  N I  + P 
Sbjct: 485 FCDLSSIDQHAFT--SLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 3/62 (4%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNI-TDIDPDAFSGLGILIELDLTKNRIHTLHP 108
           +N   +L   +       +L +L +K      ++       L  L ELDL+ + I T   
Sbjct: 310 ANKFENLCQISAS--NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC 367

Query: 109 GK 110
             
Sbjct: 368 CN 369

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGIL--IELDLTKNRIHTLH 107
           SN+I  +            L  L  ++  I  +  +  S L     + L+L  N I  + 
Sbjct: 138 SNHISSIKLPKGF--PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195

Query: 108 PG 109
           PG
Sbjct: 196 PG 197

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPD-AFSGLGILIELDLTKNRIHTLHP 108
            N    L  +AF+      L  L L    +   D    F  L +L  L+L+ + +     
Sbjct: 385 YNEPLSLKTEAFK--ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442

Query: 109 G 109
            
Sbjct: 443 Q 443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           +  +  +P          +   L      +  I    FS L  L  LDLT+ +I+ +H  
Sbjct: 21  NLGLNEIPGTLPN-----STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED 75

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 3/59 (5%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
           + ++  LP+      GL  L  L+L      ++   + S    L  L +  N       
Sbjct: 287 ATHLSELPSGLV---GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 5e-06
 Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI--LIELDLTKNRIHTLH 107
                 +     +++ + +L     +D +  DI P  F GL    +  ++L K+    + 
Sbjct: 211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270

Query: 108 PG 109
             
Sbjct: 271 SN 272

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 1/59 (1%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
              +    A +     L  L  L L    +       F GL  L  L+L  N     + 
Sbjct: 409 FTRLKVKDAQSP-FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.6 bits (129), Expect = 6e-10
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N + HL + +F       L  L L  C I  I+  A+  L  L  L LT N I +L  G
Sbjct: 37  FNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N I  L   AF   GL +L  L+  + N+  ++      L  L EL++  N I +    
Sbjct: 85  GNPIQSLALGAFS--GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 110 K 110
           +
Sbjct: 143 E 143

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
              I  +   A++   L +L  L+L    I  +   AFSGL  L +L   +  + +L   
Sbjct: 61  RCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 50  SNNI-PHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
            N+   +   D F    L NL  L L  C +  + P AF+ L  L  L++  N++ ++  
Sbjct: 454 GNSFQENFLPDIFT--ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511

Query: 109 G 109
           G
Sbjct: 512 G 512

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITD-IDPDAFSGLGILIELDLTKNRIHTLHP 108
             +        F   GL +L  L +   +  +   PD F+ L  L  LDL++ ++  L P
Sbjct: 430 HTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 109 G 109
            
Sbjct: 488 T 488

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 4e-06
 Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 2/55 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
              +  L   AF    L +L  L +    +  +    F  L  L ++ L  N   
Sbjct: 479 QCQLEQLSPTAFN--SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDID-PDAFSGLGILIELDLTKNRIHTLHP 108
             N+  L         L  L  L +    I     P+ FS L  L  LDL+ N+I +++ 
Sbjct: 109 ETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

Query: 109 G 109
            
Sbjct: 167 T 167

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
             N   +P +   ST      NL L    +  +   +F     L  LDL++  I T+  G
Sbjct: 16  ELNFYKIPDNLPFST-----KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.1 bits (94), Expect = 4e-05
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 4/61 (6%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHTLHP 108
            N +  + ++     GL  L +L  +  N+  +     F  L  LI LD++         
Sbjct: 382 FNGVITMSSNFL---GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 109 G 109
           G
Sbjct: 439 G 439

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
            +N+  +   +     L NL  L +   +        F+GL  L  L +  N  
Sbjct: 405 HSNLKQMSEFSV-FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 1/60 (1%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N +      +    G  +L  L L    +  +    F GL  L  LD   + +  +   
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEF 414

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 36.2 bits (84), Expect = 7e-04
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGIL----IELDLTKNRIHT 105
            N I       + S  L NL +L L    I  I       L  +    + LDL+ N ++ 
Sbjct: 133 HNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 106 LHPG 109
           + PG
Sbjct: 192 IQPG 195

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.6 bits (129), Expect = 8e-10
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N I ++     R     NL  L+LK   I  I+ DAF  LG L  LDL+ N + +L   
Sbjct: 35  FNKITYIGHGDLR--ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 7e-08
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           S+ I  +  DAF    L +L +L L D +++ +    F  L  L  L+L  N   TL   
Sbjct: 59  SSRINTIEGDAFY--SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116

Query: 110 K 110
            
Sbjct: 117 S 117

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 11/84 (13%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 25  FNTWLSVGKHHALAARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP 84
            +    +GK   +  R L +        + +  +  +    L  +  + +++  +  +  
Sbjct: 274 SDVVSELGKVETVTIRRLHIP----QFYLFYDLSTVYS--LLEKVKRITVENSKVFLVPC 327

Query: 85  DAFSGLGILIELDLTKNRIHTLHP 108
                L  L  LDL++N +   + 
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYL 351

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           S +   +P+          + +L L    IT I          L  L L  +RI+T+   
Sbjct: 14  SRSFTSIPSGLTA-----AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 5e-06
 Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
                +    F   GL +L+ L +K  ++ +    +   +  +  L L  +    L   
Sbjct: 134 ETFSEIRRIDFA--GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
            N    L   +     L NL  L + +    ++I    F+GL  L EL++    +     
Sbjct: 107 GNPYQTLGVTSLFP-NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165

Query: 109 G 109
            
Sbjct: 166 Q 166

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.9 bits (91), Expect = 9e-05
 Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 4/55 (7%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
            N +  LP  +        L  + +    +  +    F  L  L ++ L  N   
Sbjct: 460 RNKLKTLPDASL----FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 7/60 (11%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           + ++ +  + + +S  + ++H+L L       +       L  +  L+L    +      
Sbjct: 157 ALSLRNYQSQSLKS--IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS 214

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           N++  +         L NL +L +       + PD+      +  L+L+   I  +   
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVKTC 428

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDI---DPDAFSGLGILIELDLTKNRIHTL 106
           ++ +  +P    +   L +L  L L +  + +    +         L  L L++N + ++
Sbjct: 319 NSKVFLVPCSFSQ--HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 8/75 (10%), Positives = 25/75 (33%), Gaps = 17/75 (22%)

Query: 50  SNNIPHLPADAFRS---------------TGLVNLHNLLLKDCNITDIDPDAFSGLGILI 94
           S  I  +     ++                 L  L  L +    +  +   +     +L+
Sbjct: 419 STGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASL--FPVLL 476

Query: 95  ELDLTKNRIHTLHPG 109
            + +++N++ ++  G
Sbjct: 477 VMKISRNQLKSVPDG 491

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 37.0 bits (86), Expect = 5e-04
 Identities = 4/44 (9%), Positives = 15/44 (34%)

Query: 66  LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            V +  L +    +       +S L  +  + +  +++  +   
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS 328

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 8e-10
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N +  L + +F       L  L L  C I  I+  A+ GL  L  L LT N I +  PG
Sbjct: 41  FNPLKILKSYSFS--NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 98

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
              I  +   A+   GL +L NL+L    I    P +FSGL  L  L   + ++ +L   
Sbjct: 65  RCEIETIEDKAWH--GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF 122

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N I      +F   GL +L NL+  +  +  ++      L  L +L++  N IH+    
Sbjct: 89  GNPIQSFSPGSFS--GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP 146

Query: 110 K 110
            
Sbjct: 147 A 147

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 1e-07
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
              +  +    F    L  L  L +   N+  +D   ++ L  L  LD + NRI T    
Sbjct: 482 KCQLEQISWGVFD--TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 9/72 (12%)

Query: 40  RVLKLKIGEKSNN--IPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELD 97
             LK+     + N    +  ++ F      NL  L L  C +  I    F  L  L  L+
Sbjct: 451 NTLKM-----AGNSFKDNTLSNVFA--NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503

Query: 98  LTKNRIHTLHPG 109
           ++ N +  L   
Sbjct: 504 MSHNNLLFLDSS 515

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
              +  +P D        +  N+ L    +  +   +FS    L  LDL++  I T+   
Sbjct: 20  DQKLSKVPDDIPS-----STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK 74

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
            N +      ++   G  +L +L L       +    F GL  L  LD   + +  +  
Sbjct: 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTE 416

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 10/59 (16%), Positives = 14/59 (23%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N+             V +    L   N    D   F  L  +  + L    I  L   
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDV 303

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 2/55 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
            NN+  L +  +    L +L  L      I             L   +LT N + 
Sbjct: 506 HNNLLFLDSSHYN--QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.2 bits (92), Expect = 9e-05
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLG----ILIELDLTKNRIHT 105
            N I      A+ S  L NL ++ L    I  I  +    L     + + LD++ N I  
Sbjct: 137 HNFIHSCKLPAYFS-NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195

Query: 106 LHPG 109
           +   
Sbjct: 196 IQDQ 199

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHTLHP 108
           S N   + +  F   GL  L +L  +   +  +    AF  L  L+ LD++         
Sbjct: 384 SFNGAIIMSANFM--GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441

Query: 109 G 109
           G
Sbjct: 442 G 442

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 3/60 (5%)

Query: 50  SNNIPHLPA-DAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
            + +  +    AF    L  L  L +   N        F GL  L  L +  N       
Sbjct: 408 HSTLKRVTEFSAFL--SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N +  LPA  F       L +L +    I+ ++P+    L +L  L+L  N +  L   
Sbjct: 34  HNQLRRLPAANFT--RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK 91

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 3e-09
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N +  L    F      NL  L L   +I  I  + F     LI LDL+ N + +   G
Sbjct: 82  HNELSQLSDKTFA--FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N I  L  +  +   L  L  L L+   ++ +    F+    L EL L  N I  +   
Sbjct: 58  FNTISKLEPELCQ--KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 14/60 (23%), Positives = 21/60 (35%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           ++ +       F      NL  L L   N+  +  D+F+ L  L    L  N I  L   
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.7 bits (114), Expect = 9e-08
 Identities = 22/59 (37%), Positives = 27/59 (45%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            ++  L  + F S     LH L L    I+ I+ DAFS LG L  LDL  N I     G
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           SN+I  +  + F      NL  L L    ++         L  L EL L+ N+I  L   
Sbjct: 106 SNSIQKIKNNPFV--KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.1 bits (110), Expect = 3e-07
 Identities = 13/59 (22%), Positives = 21/59 (35%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
           +N I  L ++        +L  L L    I +  P  F  +G L  L L   ++     
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           SN    +P + F+   L  L  + L   N+  +    F+    L  L+L KN I ++   
Sbjct: 545 SNGFDEIPVEVFK--DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 7e-07
 Identities = 17/60 (28%), Positives = 25/60 (41%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
              + ++ +       L NL  L L + NI +I+ D   GL  L  LDL  N +  L   
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 7e-07
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI--LIELDLTKNRIHTLH 107
            N +            L NL  LLL +  I  +  +         L +L+L+ N+I    
Sbjct: 130 HNGLSSTKLGTQV--QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS 187

Query: 108 PG 109
           PG
Sbjct: 188 PG 189

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 5/60 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
              +  +P D        N+  L L    +  +    F+    L  LD+  N I  L P 
Sbjct: 13  HLKLTQVPDDLPT-----NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 50  SNNI-PHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI--LIELDLTKNRIHTL 106
           +  + P L           ++ NL L +  ++      F GL    L  LDL+ N ++ +
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263

Query: 107 HPG 109
              
Sbjct: 264 GND 266

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 50  SNNIPHLPADAFRS------TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
            NN+  L   A          GL +LH L L+     +I  + F  L  L  +DL  N +
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572

Query: 104 HTLHPG 109
           +TL   
Sbjct: 573 NTLPAS 578

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 7/67 (10%)

Query: 50  SNNIPHLPADAFRSTG-------LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 102
            NNI HL + +              +     +   ++  ID  +F  L  L  L++  N 
Sbjct: 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340

Query: 103 IHTLHPG 109
           I  +   
Sbjct: 341 IPGIKSN 347

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNIT-DIDPDAFSGLGILIELDLTKNRIHTLHP 108
            N I  + +DAF    L +L  L L    I  ++    + GL  + E+ L+ N+   L  
Sbjct: 390 KNKISKIESDAFS--WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447

Query: 109 G 109
            
Sbjct: 448 N 448

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
            NN+  +  D+F    L  L    L+  NI  +   +  GL  +  L+L ++   
Sbjct: 257 YNNLNVVGNDSFA--WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
            ++P +   +F+   L  L +L ++D +I  I  + F+GL  L  L L+ +  
Sbjct: 315 ASLPKIDDFSFQ--WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 50  SNNI-PHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107
            N I   L    +R  GL N+  + L       +  ++F+ +  L  L L +  +  + 
Sbjct: 414 LNEIGQELTGQEWR--GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDA--------FSGLGILIELDLTKN 101
           +NNI ++  D     GL  L  L L+  N+  +   A          GL  L  L+L  N
Sbjct: 489 NNNIANINDDML--EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546

Query: 102 RIHTLHPG 109
               +   
Sbjct: 547 GFDEIPVE 554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           ++ +  LPA          +  L L D  I +ID  AF+    + +L +  N I  L P 
Sbjct: 54  NSTMRKLPAALL--DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 111

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.2 bits (123), Expect = 5e-09
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N I +LP   F+   +  L  L+L+  +++ +    F     L  L ++ N +  +   
Sbjct: 102 FNAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 159

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.4 bits (121), Expect = 9e-09
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N++  LP   F       L  L + + N+  I+ D F     L  L L+ NR+  +   
Sbjct: 126 RNDLSSLPRGIFH--NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 183

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
              I  +   AF       +  L +    I  + P  F  + +L  L L +N + +L  G
Sbjct: 78  DLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 135

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N +  +    F    +  L  L + +  +  +       +  L  LDL+ N +  +   
Sbjct: 257 YNELEKIMYHPFV--KMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERN 313

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
           +NN+  +  D F+     +L NL L    +T +D         L   +++ N + TL  
Sbjct: 150 NNNLERIEDDTFQ--ATTSLQNLQLSSNRLTHVDLSLIPS---LFHANVSYNLLSTLAI 203

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 3/62 (4%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLL---LKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107
            +I     D +     + L+N      K+  +  +          +  L+L   +I  + 
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 85

Query: 108 PG 109
             
Sbjct: 86  TY 87

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 11/75 (14%), Positives = 20/75 (26%), Gaps = 17/75 (22%)

Query: 50  SNNIPHLPADAFRS-----------------TGLVNLHNLLLKDCNITDIDPDAFSGLGI 92
            N+I  +                             L  + L    +  I    F  +  
Sbjct: 214 HNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273

Query: 93  LIELDLTKNRIHTLH 107
           L  L ++ NR+  L+
Sbjct: 274 LERLYISNNRLVALN 288

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           +N +  L         +  L  L L   ++  ++ +       L  L L  N I TL   
Sbjct: 281 NNRLVALNLYG---QPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLS 336

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 6/55 (10%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
            N++ H+  +         L NL L   +I  +          L  L L+ N   
Sbjct: 304 HNHLLHVERNQP---QFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWD 352

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.1 bits (125), Expect = 2e-09
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N I  +   AF  T L  L   L  + N+ ++  D F G    + LD+++ RIH+L   
Sbjct: 163 KNGIQEIHNSAFNGTQLDEL--NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.5 bits (113), Expect = 8e-08
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 50  SNNIP-HLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDAFSGLGILIELDLTKNRIHTLH 107
            N++   + AD F    L  LH + ++  N +  I+P+AF  L  L  L ++   I  L 
Sbjct: 63  QNDVLEVIEADVFS--NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP 120

Query: 108 PG 109
             
Sbjct: 121 DV 122

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.2 bits (107), Expect = 6e-07
 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 51  NNIPHLPADAFRSTGL-VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            NI  +  ++F   GL      L L    I +I   AF+G  +        N +  L   
Sbjct: 139 INIHTIERNSFV--GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND 196

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 7e-07
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 49  KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN-RIHTLH 107
           K+NN+ ++  +AF    L NL  LL+ +  I  +           + LD+  N  IHT+ 
Sbjct: 88  KANNLLYINPEAF--QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 108 PG 109
             
Sbjct: 146 RN 147

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.1 bits (99), Expect = 8e-06
 Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 2/53 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR 102
           +NN+  LP D F   G      L +    I  +       L  L        +
Sbjct: 187 NNNLEELPNDVFH--GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI-HTLHP 108
            + +  +P+D  R+   +           +  I   AFSG G L ++++++N +   +  
Sbjct: 18  ESKVTEIPSDLPRNAIELRFVLT-----KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA 72

Query: 109 G 109
            
Sbjct: 73  D 73

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           ++ +  LPA          +  L L D  I +ID  AF+    + +L +  N I  L P 
Sbjct: 60  NSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 117

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N I +LP   F+   +  L  L+L+  +++ +    F     L  L ++ N +  +   
Sbjct: 108 FNAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 165

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.9 bits (124), Expect = 3e-09
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
              I  +   AF       +  L +    I  + P  F  + +L  L L +N + +L  G
Sbjct: 84  DLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.7 bits (121), Expect = 8e-09
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N++  LP   F       L  L + + N+  I+ D F     L  L L+ NR+  +   
Sbjct: 132 RNDLSSLPRGIFH--NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 189

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 8e-07
 Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 3/62 (4%)

Query: 51  NNIPHLPADAFRST---GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107
            +I     D +       L N   +  K+  +  +          +  L+L   +I  + 
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 91

Query: 108 PG 109
             
Sbjct: 92  TY 93

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N +  +    F    +  L  L + +  +  +       +  L  LDL+ N +  +   
Sbjct: 263 YNELEKIMYHPFV--KMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERN 319

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 1e-06
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
           +NN+  +  D F+     +L NL L    +T +D         L   +++ N + TL  
Sbjct: 156 NNNLERIEDDTFQ--ATTSLQNLQLSSNRLTHVDLSLIPS---LFHANVSYNLLSTLAI 209

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 17/76 (22%)

Query: 50  SNNIPHLPADAFRS-----------------TGLVNLHNLLLKDCNITDIDPDAFSGLGI 92
            N+I  +                             L  + L    +  I    F  +  
Sbjct: 220 HNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279

Query: 93  LIELDLTKNRIHTLHP 108
           L  L ++ NR+  L+ 
Sbjct: 280 LERLYISNNRLVALNL 295

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 6/55 (10%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
            N++ H+  +         L NL L   +I  +          L  L L+ N   
Sbjct: 310 HNHLLHVERNQP---QFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           +N +  L         +  L  L L   ++  ++ +       L  L L  N I TL   
Sbjct: 287 NNRLVALNLYGQ---PIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLS 342

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.2 bits (123), Expect = 3e-09
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           N I  L  DAF+  GL +L++L+L    IT++    F GL  L  L L  N+I+ L   
Sbjct: 66  NQISELAPDAFQ--GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD 122

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 4e-09
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 49  KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
           + N I  +P  AF       L  + L +  I+++ PDAF GL  L  L L  N+I  L  
Sbjct: 40  EQNTIKVIPPGAFS--PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK 97

Query: 109 G 109
            
Sbjct: 98  S 98

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.0 bits (107), Expect = 5e-07
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N I  LP   F   GL +L  LLL    I  +  DAF  L  L  L L  N++ T+  G
Sbjct: 89  GNKITELPKSLFE--GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 39.2 bits (92), Expect = 5e-05
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 67  VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
             +  + L+   I  I P AFS    L  +DL+ N+I  L P 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD 74

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.2 bits (123), Expect = 4e-09
 Identities = 9/62 (14%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDAFSGLGILIELDLTKNR-IHTLH 107
             ++  +P+ AF    L N+  + +     +  ++  +F  L  +  +++   R +  + 
Sbjct: 40  ETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97

Query: 108 PG 109
           P 
Sbjct: 98  PD 99

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDAFSGLG-ILIELDLTKNRIHTLH 107
           +N    +   AF  T    L  + L     +T ID DAF G+      LD+++  +  L 
Sbjct: 165 NNGFTSVQGYAFNGT---KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP 221

Query: 108 PG 109
             
Sbjct: 222 SK 223

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
              +  L + +F    L  + ++ +++   +T IDPDA   L +L  L +    +     
Sbjct: 65  DVTLQQLESHSFY--NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD 122

Query: 109 G 109
            
Sbjct: 123 L 123

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDI-DPDAFSGLGILIELDLTKN-RIHTLHP 108
            N+ ++  DA     L  L  L + +  +    D        I   L++T N  + ++  
Sbjct: 91  RNLTYIDPDAL--KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 109 G 109
            
Sbjct: 149 N 149

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 3/62 (4%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDAFSGLG-ILIELDLTKNRIHTLH 107
           +  +   P              L + D   +T I  +AF GL    + L L  N   ++ 
Sbjct: 114 NTGLKMFPDLTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172

Query: 108 PG 109
             
Sbjct: 173 GY 174

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 39.2 bits (92), Expect = 6e-05
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 51  NNIPHLPADAFRSTGLVN-LHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR-IHTLHP 108
             +  +P +AF+  GL N    L L +   T +   AF+G   L  + L KN+ +  +  
Sbjct: 141 PYMTSIPVNAFQ--GLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLNKNKYLTVIDK 197

Query: 109 G 109
            
Sbjct: 198 D 198

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 10/58 (17%)

Query: 53  IPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN-RIHTLHPG 109
           IP LP          +   L L + ++  I   AFS L  +  + ++ +  +  L   
Sbjct: 26  IPSLPP---------STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH 74

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.3 bits (123), Expect = 5e-09
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNIT-DIDPDAFSGLGILIELDLTKNRIHTLHP 108
            N I  + A +F    L  L  L L        ID +AF  L  L  LDL  ++I+ LHP
Sbjct: 33  FNYIRTVTASSFP--FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90

Query: 109 G 109
            
Sbjct: 91  D 91

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 12/59 (20%), Positives = 24/59 (40%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           +NI     + F      ++ +L L    +  ++   F  L  L  L+L  N+I+ +   
Sbjct: 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
             +  L +  F    L +L  L L    I  I  +AF GL  L  L+L+ N +  L+  
Sbjct: 276 GFVFSLNSRVFE--TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N I  +  +AF   GL NL  L L    + ++    F GL  +  +DL KN I  +   
Sbjct: 299 YNKINKIADEAFY--GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 1e-07
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITD--IDPDAFSGLGILIELDLTKNRIHTLH 107
           S+ I  L  DAF+  GL +L  L L  C ++D  +    F  L  L  LDL+KN+I +L+
Sbjct: 82  SSKIYFLHPDAFQ--GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 108 PGK 110
              
Sbjct: 140 LHP 142

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 49  KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
           +      L  D F   GL +L  L L    +  + P  FS L  L  L L  NR+  L  
Sbjct: 464 QLAWETELCWDVFE--GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521

Query: 109 G 109
            
Sbjct: 522 N 522

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 51  NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH 107
           N +  L +  F   GL  +  + L+  +I  I    F  L  L  LDL  N + T+H
Sbjct: 324 NLLGELYSSNF--YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 1e-06
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 50  SNNIP-HLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
           S   P  +  +AFR   L NL  L L    I  + PDAF GL  L EL L    +   
Sbjct: 57  SQYTPLTIDKEAFR--NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 4e-06
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
            N +  LP   F  + L  L  L L    +T +  +       L  LD+++N++   +P
Sbjct: 489 HNYLNSLPPGVF--SHLTALRGLSLNSNRLTVLSHNDLPAN--LEILDISRNQLLAPNP 543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 5e-05
 Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 7/62 (11%)

Query: 49  KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI-HTLH 107
           +  N+  +P        L     LLL    I  +   +F  L  L  L+L       T+ 
Sbjct: 12  RFCNLTQVP------QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65

Query: 108 PG 109
             
Sbjct: 66  KE 67

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 3/62 (4%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI--LIELDLTKNRIHTLH 107
            N I  L         L +L ++      I  +       L    L    L  N +++  
Sbjct: 132 KNQIRSLYLHPSFG-KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190

Query: 108 PG 109
             
Sbjct: 191 SV 192

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 37.1 bits (86), Expect = 4e-04
 Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 5/63 (7%)

Query: 50  SNNI--PHLPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHTL 106
              +    L    FR   L  L  L L    I  +    +F  L  L  +D + N+I  +
Sbjct: 106 FCGLSDAVLKDGYFR--NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163

Query: 107 HPG 109
              
Sbjct: 164 CEH 166

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 36.7 bits (85), Expect = 7e-04
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLG--ILIELDLTKNRIHTLH 107
           SN I    A +       ++        NI D D + F+GL    +  LDL+   + +L+
Sbjct: 225 SNAISKSQAFSL--ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282

Query: 108 PG 109
             
Sbjct: 283 SR 284

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 36.3 bits (84), Expect = 9e-04
 Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 6/66 (9%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLG------ILIELDLTKNRI 103
           SN I  +            L    L   ++       +          +L  LD++ N  
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216

Query: 104 HTLHPG 109
                G
Sbjct: 217 TVDITG 222

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.9 bits (122), Expect = 5e-09
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N I  +  +AF   GL +L  L L    +  ID   F  L  L  LDL+ N I  L   
Sbjct: 308 QNEINKIDDNAFW--GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.5 bits (121), Expect = 8e-09
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N +  + +  F    L  L  L L   +I  +   +F GL  L EL L  N++ ++  G
Sbjct: 332 QNFLGSIDSRMFE--NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.5 bits (121), Expect = 9e-09
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            + I  L    F      +L  L L    I  ID +AF GL  L++L+L++N + ++   
Sbjct: 284 KSKIFALLKSVFS--HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.2 bits (115), Expect = 6e-08
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITD--IDPDAFSGLGILIELDLTKNRIHTLH 107
            N    L   AF   GL NL  L L  CN+    +  + F  L  L  L L  N I  + 
Sbjct: 88  YNQFLQLETGAFN--GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 108 PG 109
           P 
Sbjct: 146 PA 147

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.1 bits (107), Expect = 7e-07
 Identities = 11/60 (18%), Positives = 18/60 (30%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
             N        F+      +    L    I  +    FS    L +L L +N I+ +   
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.0 bits (99), Expect = 9e-06
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN 101
            N+I  L   +F   GL NL  L L    +  +    F  L  L ++ L  N
Sbjct: 356 YNHIRALGDQSF--LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 50  SNNIP-HLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
                  +  + FR  GL +L  L L       ++  AF+GL  L  L LT+  + 
Sbjct: 63  QQTPGLVIRNNTFR--GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD 116

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 50  SNNI--PHLPADAFRSTGLVNLHNLLLKDCNITDIDPD-AFSGLGILIELDLTKNRIHTL 106
             N+    L  + F+   L +L  L+L+D NI  I P   F  +     LDLT N++ ++
Sbjct: 112 QCNLDGAVLSGNFFK--PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169

Query: 107 HPG 109
              
Sbjct: 170 CEE 172

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 50.9 bits (122), Expect = 6e-09
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N +  LP  A R  GL  L  L LK   +  + P   +    L +L L  N +  L  G
Sbjct: 109 FNRLTSLPLGALR--GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.1 bits (107), Expect = 6e-07
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N +  LP           L  L L + N+T++     +GL  L  L L +N ++T+  G
Sbjct: 133 GNELKTLPPGLLT--PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N +  LP    +   L  L  L +    +T +   A  GLG L EL L  N + TL PG
Sbjct: 86  HNQLQSLPL-LGQ--TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.0 bits (99), Expect = 7e-06
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 4/57 (7%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
            N +               L  L L    +T +       L +L  LDL+ N++ +L
Sbjct: 40  ENLLYTFSLATL--MPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSL 92

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 1e-08
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 49  KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
            +N    L A       L  L  +   +  ITDI+  AF G   + E+ LT NR+  +  
Sbjct: 40  NNNEFTVLEATGIFK-KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH 98

Query: 109 G 109
            
Sbjct: 99  K 99

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.5 bits (116), Expect = 3e-08
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           SN + ++    F+  GL +L  L+L+   IT +  D+F GL  +  L L  N+I T+ PG
Sbjct: 90  SNRLENVQHKMFK--GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           +N I  +   AF   G   ++ +LL    + ++    F GL  L  L L  NRI  +   
Sbjct: 66  NNKITDIEEGAF--EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND 123

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N +  LPA  F    L NL  L + D  +  +    F  L  L EL L +N++ +L P 
Sbjct: 70  DNKLQTLPAGIF--KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR 127

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.8 bits (117), Expect = 3e-08
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 49  KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
           +SN +  LP+ AF    L  L  L L D  +  +    F  L  L  L +T N++  L  
Sbjct: 45  QSNKLSSLPSKAF--HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI 102

Query: 109 G 109
           G
Sbjct: 103 G 103

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.1 bits (115), Expect = 5e-08
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N +  LP   F    L  L  L L    +  +    F  L  L EL L  N++  +  G
Sbjct: 118 RNQLKSLPPRVF--DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.1 bits (110), Expect = 3e-07
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N +  LP   F    LVNL  L L    +  + P  F  L  L  L L  N + +L  G
Sbjct: 94  DNKLQALPIGVF--DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N +  LP   F    L +L  L L +  +  +   AF  L  L  L L  N++  +  G
Sbjct: 142 YNELQSLPKGVFD--KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 67  VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            +   L L+   ++ +   AF  L  L  L L  N++ TL  G
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 4e-08
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N + HL + +F       L  L L  C I  I+  A+  L  L  L LT N I +L  G
Sbjct: 37  FNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 5e-07
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N I  L   AF   GL +L  L+  + N+  ++      L  L EL++  N I +    
Sbjct: 85  GNPIQSLALGAFS--GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 110 K 110
           +
Sbjct: 143 E 143

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
              I  +   A++   L +L  L+L    I  +   AFSGL  L +L   +  + +L   
Sbjct: 61  RCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 2e-06
 Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
              +  L   AF    L +L  L +   N   +D   +  L  L  LD + N I T    
Sbjct: 479 QCQLEQLSPTAFN--SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 50  SNNIP-HLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
            N+   +   D F  T L NL  L L  C +  + P AF+ L  L  L+++ N   +L  
Sbjct: 454 GNSFQENFLPDIF--TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511

Query: 109 G 109
            
Sbjct: 512 F 512

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
             N   +P +        +  NL L    +  +   +F     L  LDL++  I T+  G
Sbjct: 16  ELNFYKIPDNLPF-----STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 36.5 bits (85), Expect = 6e-04
 Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 3/60 (5%)

Query: 50  SNNIPHL-PADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
            +N+  +     F    L NL  L +   +        F+GL  L  L +  N       
Sbjct: 405 HSNLKQMSEFSVFL--SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
            +++    A   +     N+  L L    ++ I     +    L  L+L+ N ++    
Sbjct: 19  DSSLKQALASLRQ--SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 3e-07
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           +NNI  +     +        N+ L +  IT +          +  LDL  N I T++  
Sbjct: 108 NNNISRVSCSRGQ-----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 5/57 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
            N I  +            L  L L    +  +    F     +  + L  N++  +
Sbjct: 178 YNFIYDVKGQVV----FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLI 229

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
            N I  +      +     L +L L+   I D+          L  LDL+ N++  + P
Sbjct: 153 LNEIDTVNFAELAA-SSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGP 208

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 6/44 (13%), Positives = 13/44 (29%)

Query: 66  LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
                   + D ++             + ELDL+ N +  +   
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA 52

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 3/61 (4%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSG-LGILIELDLTKNRIHTLHP 108
           +N I  L            +  L LK   I  ++    +     L  L+L  N I+ +  
Sbjct: 129 NNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186

Query: 109 G 109
            
Sbjct: 187 Q 187

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 4/61 (6%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N +  + A          L  L L    + +        L  L  LDL  N +  L  G
Sbjct: 43  GNPLSQISAADLA--PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG 98

Query: 110 K 110
            
Sbjct: 99  P 99

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 2e-07
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
            N I  L         L  L  L++    I  +D   F     L  LDL+ N++  +
Sbjct: 30  QNYISELWTSDIL--SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 50  SNNIPHLPADAFRSTGLVNL-HNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
            N + H+P D  + T ++N+  N       I+++       L  L  L ++ NRI  L  
Sbjct: 9   KNGLIHVPKDLSQKTTILNISQN------YISELWTSDILSLSKLRILIISHNRIQYLDI 62

Query: 109 G 109
            
Sbjct: 63  S 63

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
            +++    A   +     N+  L L    ++ I     +    L  L+L+ N ++    
Sbjct: 19  DSSLKQALASLRQ--SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           +NNI  +     +        N+ L +  IT +          +  LDL  N I T++  
Sbjct: 108 NNNISRVSCSRGQ-----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 4/61 (6%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N +  + A          L  L L    + +        L  L  LDL  N +  L  G
Sbjct: 43  GNPLSQISAADLA--PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG 98

Query: 110 K 110
            
Sbjct: 99  P 99

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 3/61 (4%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSG-LGILIELDLTKNRIHTLHP 108
           +N I  L            +  L LK   I  ++    +     L  L+L  N I+ +  
Sbjct: 129 NNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186

Query: 109 G 109
            
Sbjct: 187 Q 187

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.8 bits (91), Expect = 9e-05
 Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 5/57 (8%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
            N I  +            L  L L    +  +    F     +  + L  N++  +
Sbjct: 178 YNFIYDVKGQVV----FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLI 229

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 6/44 (13%), Positives = 13/44 (29%)

Query: 66  LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
                   + D ++             + ELDL+ N +  +   
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA 52

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
            N I  +      +     L +L L+   I D+          L  LDL+ N++  + P
Sbjct: 153 LNEIDTVNFAELAA-SSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGP 208

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N+I  L         L  L  L L    I  +D   F     L  LD++ NR+  +   
Sbjct: 61  QNSISELRMPDISF--LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC 118

Query: 110 K 110
            
Sbjct: 119 P 119

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.6 bits (100), Expect = 5e-06
 Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 3/63 (4%)

Query: 50  SNNIPHLPADAFRSTGLVNL---HNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
            N     P     S+ L      H    +   I    P   +    LI+L +  N I  +
Sbjct: 762 YNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV 821

Query: 107 HPG 109
              
Sbjct: 822 DEK 824

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 3/62 (4%)

Query: 50  SNNIPHLPADAFRSTG---LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
            N I     +   S      +N   + L    I     + F+    +  + L+ N + ++
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712

Query: 107 HP 108
             
Sbjct: 713 PE 714

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.1 bits (91), Expect = 9e-05
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
            N + HL A        V L +L L    I +I  D  +    +  L  + N++  +
Sbjct: 582 HNKVRHLEA----FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI 634

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 9/67 (13%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDI-------DPDAFSGLGILIELDLTKNR 102
            N I   P + F +     +  ++L +  +T I           +    +L  +DL  N+
Sbjct: 682 YNEIQKFPTELFAT--GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK 739

Query: 103 IHTLHPG 109
           + +L   
Sbjct: 740 LTSLSDD 746

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 3/61 (4%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDI-DPDAFSGLGILIELDLTKNRIHTLHP 108
            N I  +P D         +  L      +  I +      + ++  +D + N+I +   
Sbjct: 604 YNQIEEIPEDFCA--FTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661

Query: 109 G 109
            
Sbjct: 662 N 662

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 36.4 bits (84), Expect = 7e-04
 Identities = 7/65 (10%), Positives = 20/65 (30%), Gaps = 6/65 (9%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGI-----LIELDLTKNRIH 104
            N + ++P + F +  +  + ++      I     +    +          + L+ N I 
Sbjct: 628 HNKLKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ 686

Query: 105 TLHPG 109
                
Sbjct: 687 KFPTE 691

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 39.7 bits (93), Expect = 4e-05
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 49  KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
           +S  +  L    FR  GL  L  L L    +  +    F  L  L  L L  N++ +L  
Sbjct: 43  QSTGLATLSDATFR--GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100

Query: 109 G 109
           G
Sbjct: 101 G 101

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
            N +  L A  F    L  L  L L +  +  +    F  L  L +L L  N++ +L  G
Sbjct: 68  YNQLQTLSAGVFD--DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG 125

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 65  GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
            L  L +L L+   I+DI+      L  L  L L  N+I  +  
Sbjct: 107 DLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITV 148

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 65  GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
            L  L  L L+D  I+DI P   +GL  L  L L+KN I  L  
Sbjct: 151 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA 192

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 36.6 bits (84), Expect = 6e-04
 Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 6/59 (10%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
            N +  +         L NL  L L +  I D+       L  L  L L  N I  ++ 
Sbjct: 74  GNKLTDIKPLT----NLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDING 126

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 49  KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
             N +  + +D      L +L  L LK   +T I+P+AF G   + EL L +N+I  +  
Sbjct: 37  NDNELGRISSDGLFG-RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95

Query: 109 G 109
            
Sbjct: 96  K 96

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP 108
           SN I  +         L  L++L L +  + + D +   GL  L  L L++N I  + P
Sbjct: 274 SNQISDISVLN----NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 50  SNNIPHLPADAFRS-----TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH 104
            N I  +    F          +N+ ++ L +  I+    + FS    L  ++L  N + 
Sbjct: 411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470

Query: 105 TLHPG 109
            +   
Sbjct: 471 EIPKN 475

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 3/60 (5%)

Query: 50  SNNIPHLPADAFRSTGLVNL---HNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL 106
            N+    P     S+ L      +    +        P+  +    L +L +  N I  +
Sbjct: 522 YNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV 581

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 36.1 bits (84), Expect = 8e-04
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 64  TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI 103
           +GL NL  L +   ++T       SGL  L  LD++ +  
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	110
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.45
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.39
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.38
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.37
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.35
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.34
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.31
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.27
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.19
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.1
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.03
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.03
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.03
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.01
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.93
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.91
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.88
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.88
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.87
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.86
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.85
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.85
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.85
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.85
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.84
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.81
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.8
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.8
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.78
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.77
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.76
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.74
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.69
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.67
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.63
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.61
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.6
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.58
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.57
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.57
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.57
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.53
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.52
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.51
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.51
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.49
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.47
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.47
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.47
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.46
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.45
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.44
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.42
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.41
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.41
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.4
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.4
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.39
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.39
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.38
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.35
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.3
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.29
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.24
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.2
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.2
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.18
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.11
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.1
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.07
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.04
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.03
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.03
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.02
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.02
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.02
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.01
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.99
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.99
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.97
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.96
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.94
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.94
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	97.94
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.93
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.9
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	97.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.86
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.85
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.82
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.79
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.67
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.66
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.65
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.64
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.64
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.63
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.56
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.55
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.54
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.52
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.44
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.31
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.11
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.96
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.91
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.78
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.73
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.46
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	96.38
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.35
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.33
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	96.28
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.89
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.73
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.64
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	95.64
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	95.59
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	95.59
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	95.06
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	94.54
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	93.91
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	92.08
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	91.23
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	90.88
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	89.47
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	87.35
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	86.61
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	84.33

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.50  E-value=3.1e-14  Score=94.91  Aligned_cols=85  Identities=26%  Similarity=0.364  Sum_probs=74.0

Q ss_pred             CCCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCccccc
Q psy17697         19 LTVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS   88 (110)
Q Consensus        19 ~cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~   88 (110)
                      .||..|.|.+..+.+... +         .++.|++    ++|.++.+++..|.  ++++|+.|++++|+++.+++..|.
T Consensus         2 ~CP~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L----~~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~f~   75 (170)
T 3g39_A            2 ACPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYL----YDNQITKLEPGVFD--RLTQLTRLDLDNNQLTVLPAGVFD   75 (170)
T ss_dssp             CCC-CCEEETTEEECTTSCCSSCCSCCCTTCSEEEC----CSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTT
T ss_pred             cCcCcCCcCCCEEEeCCCCcCccCccCCCCCcEEEc----CCCcCCccChhhhc--CcccCCEEECCCCCcCccChhhcc
Confidence            699999999876666444 1         7889999    99999999999998  789999999999999999999899


Q ss_pred             CCcCCcEEeCCCCCCccccCC
Q psy17697         89 GLGILIELDLTKNRIHTLHPG  109 (110)
Q Consensus        89 ~l~~L~~l~Ls~N~l~~l~~~  109 (110)
                      .+++|+.|+|++|+|+.++++
T Consensus        76 ~l~~L~~L~L~~N~l~~~~~~   96 (170)
T 3g39_A           76 KLTQLTQLSLNDNQLKSIPRG   96 (170)
T ss_dssp             TCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCCCCEEECCCCccCEeCHH
Confidence            999999999999999988764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.45  E-value=1.5e-13  Score=92.11  Aligned_cols=88  Identities=27%  Similarity=0.377  Sum_probs=75.2

Q ss_pred             ccCCCCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcc
Q psy17697         16 QLGLTVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPD   85 (110)
Q Consensus        16 ~~~~cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~   85 (110)
                      .+..||..|.|....+.+... +         .++.|++    ++|.+..+++..|.  ++++|+.|++++|+++.+++.
T Consensus         2 ~~~~CP~~C~C~~~~l~~~~n~l~~iP~~~~~~L~~L~L----s~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~i~~~   75 (174)
T 2r9u_A            2 HSAGCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWL----NNNQITKLEPGVFD--HLVNLQQLYFNSNKLTAIPTG   75 (174)
T ss_dssp             CCCSSCTTSEECSSEEECCSSCCSSCCSCCCTTCSEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCCCCCCCEECCcEEEeCCCCCCccCCCcCCCCcEEEe----CCCCccccCHHHhc--CCcCCCEEECCCCCCCccChh
Confidence            467899999997655555433 1         7889999    99999999999998  789999999999999999998


Q ss_pred             cccCCcCCcEEeCCCCCCccccCC
Q psy17697         86 AFSGLGILIELDLTKNRIHTLHPG  109 (110)
Q Consensus        86 ~f~~l~~L~~l~Ls~N~l~~l~~~  109 (110)
                      .|..+++|+.|+|++|+|+.++++
T Consensus        76 ~~~~l~~L~~L~L~~N~l~~l~~~   99 (174)
T 2r9u_A           76 VFDKLTQLTQLDLNDNHLKSIPRG   99 (174)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             HhCCcchhhEEECCCCccceeCHH
Confidence            888999999999999999988764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.39  E-value=3.6e-13  Score=92.94  Aligned_cols=86  Identities=28%  Similarity=0.356  Sum_probs=65.8

Q ss_pred             cCCCCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCccc
Q psy17697         17 LGLTVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDA   86 (110)
Q Consensus        17 ~~~cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~   86 (110)
                      ...||..|.|.+..+.|... +         .++.|++    ++|.+..+++..|.  ++++|+.|++++|.++.+.+..
T Consensus         2 ~~~CP~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l----~~n~i~~i~~~~~~--~l~~L~~L~Ls~N~i~~~~~~~   75 (220)
T 2v9t_B            2 SLHCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRL----EQNTIKVIPPGAFS--PYKKLRRIDLSNNQISELAPDA   75 (220)
T ss_dssp             CCCSCTTSEEETTEEECTTSCCSSCCSSCCTTCCEEEC----CSSCCCEECTTSST--TCTTCCEEECCSSCCCEECTTT
T ss_pred             CCCCCCCCEECCCEEEcCCCCcCcCCCccCcCCCEEEC----CCCcCCCcCHhHhh--CCCCCCEEECCCCcCCCcCHHH
Confidence            45799999999876666443 1         6777888    88888888877777  6777888888888887777777


Q ss_pred             ccCCcCCcEEeCCCCCCccccC
Q psy17697         87 FSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        87 f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      |.++++|+.|+|++|.|+.+|+
T Consensus        76 ~~~l~~L~~L~Ls~N~l~~l~~   97 (220)
T 2v9t_B           76 FQGLRSLNSLVLYGNKITELPK   97 (220)
T ss_dssp             TTTCSSCCEEECCSSCCCCCCT
T ss_pred             hhCCcCCCEEECCCCcCCccCH
Confidence            7777777777777777777665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.38  E-value=5.6e-13  Score=96.69  Aligned_cols=84  Identities=24%  Similarity=0.312  Sum_probs=76.6

Q ss_pred             CCCCC-cccccCceeEEE--------E----eeeEEEEeeCCCC-ccCCCCCcCccCccCcccccEEeccCCCCcccCcc
Q psy17697         20 TVESC-FNTWLSVGKHHA--------L----AARVLKLKIGEKS-NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPD   85 (110)
Q Consensus        20 cp~~c-~c~~~~~~~~~~--------l----~l~~l~l~~~~~~-n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~   85 (110)
                      ||..| .|.+..+.|...        +    .++.|++    ++ |.|..+++..|.  ++++|+.|+|++|+|+.+++.
T Consensus         1 cp~~c~~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l----~~~n~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~   74 (347)
T 2ifg_A            1 CPDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYI----ENQQHLQHLELRDLR--GLGELRNLTIVKSGLRFVAPD   74 (347)
T ss_dssp             CCSSSCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEEC----CSCSSCCEECGGGSC--SCCCCSEEECCSSCCCEECTT
T ss_pred             CCCcCccccCCEEEcCCCCCCCccCCCCCCCCeeEEEc----cCCCCCCCcChhHhc--cccCCCEEECCCCccceeCHH
Confidence            89999 999887777654        2    6899999    96 999999999998  899999999999999999999


Q ss_pred             cccCCcCCcEEeCCCCCCccccCC
Q psy17697         86 AFSGLGILIELDLTKNRIHTLHPG  109 (110)
Q Consensus        86 ~f~~l~~L~~l~Ls~N~l~~l~~~  109 (110)
                      +|..+++|+.|+|++|+|+.+|++
T Consensus        75 ~~~~l~~L~~L~l~~N~l~~~~~~   98 (347)
T 2ifg_A           75 AFHFTPRLSRLNLSFNALESLSWK   98 (347)
T ss_dssp             GGGSCSCCCEEECCSSCCSCCCST
T ss_pred             HhcCCcCCCEEeCCCCccceeCHH
Confidence            999999999999999999999864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.37  E-value=8.4e-13  Score=87.76  Aligned_cols=83  Identities=27%  Similarity=0.369  Sum_probs=61.6

Q ss_pred             CCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccC
Q psy17697         20 TVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSG   89 (110)
Q Consensus        20 cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~   89 (110)
                      ||..|.|.|..+.+... +         .++.|++    ++|.+..++...|.  .+++|+.+++++|.++.+++..|..
T Consensus         1 Cp~~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l----~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~   74 (177)
T 2o6r_A            1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLEL----ESNKLQSLPHGVFD--KLTQLTKLSLSQNQIQSLPDGVFDK   74 (177)
T ss_dssp             CCTTCEEETTEEECCSSCCSSCCTTCCTTCSEEEC----CSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             CcCCCEeCCCEEEecCCCCccCCCCCCCCCcEEEe----CCCcccEeCHHHhc--CcccccEEECCCCcceEeChhHccC
Confidence            89999999987777544 1         6677777    77777777777776  5677777777777777777766677


Q ss_pred             CcCCcEEeCCCCCCccccC
Q psy17697         90 LGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        90 l~~L~~l~Ls~N~l~~l~~  108 (110)
                      +++|+.|++++|.++.+++
T Consensus        75 l~~L~~L~l~~N~l~~~~~   93 (177)
T 2o6r_A           75 LTKLTILYLHENKLQSLPN   93 (177)
T ss_dssp             CTTCCEEECCSSCCCCCCT
T ss_pred             CCccCEEECCCCCccccCH
Confidence            7777777777777776654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.35  E-value=1.1e-12  Score=89.06  Aligned_cols=85  Identities=25%  Similarity=0.316  Sum_probs=48.9

Q ss_pred             CCCCCCCcccccCceeEEE-E--------------------------------eeeEEEEeeCCCCccCCCCCcCccCcc
Q psy17697         18 GLTVESCFNTWLSVGKHHA-L--------------------------------AARVLKLKIGEKSNNIPHLPADAFRST   64 (110)
Q Consensus        18 ~~cp~~c~c~~~~~~~~~~-l--------------------------------~l~~l~l~~~~~~n~l~~~~~~~f~~~   64 (110)
                      ..||..|.|.+..+.|... +                                .++.|++    ++|.++.+++..|.  
T Consensus         2 ~~CP~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~L----s~N~i~~i~~~~f~--   75 (193)
T 2wfh_A            2 SRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDL----SNNRISTLSNQSFS--   75 (193)
T ss_dssp             --CCTTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEEC----CSSCCCCCCTTTTT--
T ss_pred             CCCCCCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEEC----CCCcCCEeCHhHcc--
Confidence            4699999998765444332 1                                3444555    55555555555555  


Q ss_pred             CcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         65 GLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        65 ~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      ++++|+.|++++|.++.+++.+|.++++|+.|+|++|.|+.+++
T Consensus        76 ~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~  119 (193)
T 2wfh_A           76 NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPE  119 (193)
T ss_dssp             TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeCh
Confidence            45555666666666666555555556666666666666655554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.34  E-value=1.8e-12  Score=88.09  Aligned_cols=83  Identities=23%  Similarity=0.342  Sum_probs=62.4

Q ss_pred             CCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccC
Q psy17697         20 TVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSG   89 (110)
Q Consensus        20 cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~   89 (110)
                      ||..|.|.|..+.|... +         .++.|++    ++|.+..++...|.  ++++|+.+++++|.++.+++..|..
T Consensus         1 Cp~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l----~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~   74 (208)
T 2o6s_A            1 CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDL----ETNSLKSLPNGVFD--ELTSLTQLYLGGNKLQSLPNGVFNK   74 (208)
T ss_dssp             CCTTCEEETTEEECCSSCCSSCCSCCCTTCSEEEC----CSSCCCCCCTTTTT--TCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             CcCCCEECCCEEEecCCCccCCCCCCCCCCcEEEc----CCCccCcCChhhhc--ccccCcEEECCCCccCccChhhcCC
Confidence            89999999988877654 1         5777777    77777777777776  5677777777777777777766677


Q ss_pred             CcCCcEEeCCCCCCccccC
Q psy17697         90 LGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        90 l~~L~~l~Ls~N~l~~l~~  108 (110)
                      +++|+.|++++|.++.+++
T Consensus        75 l~~L~~L~Ls~n~l~~~~~   93 (208)
T 2o6s_A           75 LTSLTYLNLSTNQLQSLPN   93 (208)
T ss_dssp             CTTCCEEECCSSCCCCCCT
T ss_pred             CCCcCEEECCCCcCCccCH
Confidence            7777777777777776654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.31  E-value=2.2e-12  Score=87.20  Aligned_cols=84  Identities=29%  Similarity=0.394  Sum_probs=57.7

Q ss_pred             CCCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcC-ccCccCcccccEEeccCCCCcccCcccc
Q psy17697         19 LTVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPAD-AFRSTGLVNLHNLLLKDCNITDIDPDAF   87 (110)
Q Consensus        19 ~cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~-~f~~~~~~~L~~l~l~~n~l~~i~~~~f   87 (110)
                      .||..|.|.|..+.+... +         .++.|++    ++|.+..+++. .|.  .+++|+.|++++|+++.+.+..|
T Consensus         1 ~CP~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l----~~n~i~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~   74 (192)
T 1w8a_A            1 DCPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLL----NDNELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPNAF   74 (192)
T ss_dssp             CCCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEEC----CSCCCCSBCCSCSGG--GCTTCCEEECCSSCCCCBCTTTT
T ss_pred             CcCCCCEECCCEEEcCCCCcCcCccCCCCCCCEEEC----CCCcCCccCCccccc--cCCCCCEEECCCCCCCCcCHhHc
Confidence            599999999876655433 1         6667777    77777776654 455  56677777777777777766666


Q ss_pred             cCCcCCcEEeCCCCCCccccC
Q psy17697         88 SGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        88 ~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++++|+.|++++|.|+.+++
T Consensus        75 ~~l~~L~~L~Ls~N~l~~~~~   95 (192)
T 1w8a_A           75 EGASHIQELQLGENKIKEISN   95 (192)
T ss_dssp             TTCTTCCEEECCSCCCCEECS
T ss_pred             CCcccCCEEECCCCcCCccCH
Confidence            666777777777776666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.27  E-value=6.8e-12  Score=86.52  Aligned_cols=18  Identities=17%  Similarity=0.004  Sum_probs=13.0

Q ss_pred             CCCCCCCcccccCceeEE
Q psy17697         18 GLTVESCFNTWLSVGKHH   35 (110)
Q Consensus        18 ~~cp~~c~c~~~~~~~~~   35 (110)
                      ..||..|.|.+..+.+..
T Consensus         3 ~~CP~~C~C~~~~l~~s~   20 (220)
T 2v70_A            3 LACPEKCRCEGTTVDCSN   20 (220)
T ss_dssp             -CCCTTCEEETTEEECCS
T ss_pred             CCCCCCCEECCCEeEeCC
Confidence            579999999887655543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.19  E-value=2.2e-11  Score=89.29  Aligned_cols=89  Identities=29%  Similarity=0.369  Sum_probs=63.4

Q ss_pred             cccCCCCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc
Q psy17697         15 DQLGLTVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP   84 (110)
Q Consensus        15 ~~~~~cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~   84 (110)
                      .....||..|.|.+..+.|... +         .++.|++    ++|.+..++...|.. ++++|+.|++++|+++.+++
T Consensus         7 ~~~~~Cp~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~L----s~N~l~~l~~~~~~~-~l~~L~~L~L~~N~i~~i~~   81 (361)
T 2xot_A            7 RSVVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDL----SHNNLSRLRAEWTPT-RLTNLHSLLLSHNHLNFISS   81 (361)
T ss_dssp             CCCTTCCTTCEEETTEEECCSSCCSSCCSSCCTTCSEEEC----CSSCCCEECTTSSSS-CCTTCCEEECCSSCCCEECT
T ss_pred             CcCCCCCCCCEECCCEEEeCCCCcCccCccCCCCCCEEEC----CCCCCCccChhhhhh-cccccCEEECCCCcCCccCh
Confidence            4467799999998766666544 2         5677788    888888777776631 25677777777777777777


Q ss_pred             ccccCCcCCcEEeCCCCCCccccC
Q psy17697         85 DAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        85 ~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .+|..+++|+.|+|++|.|+.+++
T Consensus        82 ~~~~~l~~L~~L~Ls~N~l~~~~~  105 (361)
T 2xot_A           82 EAFVPVPNLRYLDLSSNHLHTLDE  105 (361)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECT
T ss_pred             hhccCCCCCCEEECCCCcCCcCCH
Confidence            667777777777777777776654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.15  E-value=3.5e-11  Score=92.00  Aligned_cols=65  Identities=32%  Similarity=0.430  Sum_probs=56.7

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .+++|++    ++|.|+.+++..|.  ++++|+.|++++|+|+.+++++|.++++|+.|+|++|+|+.+|+
T Consensus        53 ~~~~LdL----s~N~i~~l~~~~f~--~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~  117 (635)
T 4g8a_A           53 STKNLDL----SFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL  117 (635)
T ss_dssp             TCCEEEC----TTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred             CCCEEEe----eCCCCCCCCHHHHh--CCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence            7788899    99999999888888  78889999999998888888888888888888888888888765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.13  E-value=1e-10  Score=87.77  Aligned_cols=86  Identities=31%  Similarity=0.350  Sum_probs=59.2

Q ss_pred             cCCCCCCCcccccC--ceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc
Q psy17697         17 LGLTVESCFNTWLS--VGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP   84 (110)
Q Consensus        17 ~~~cp~~c~c~~~~--~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~   84 (110)
                      ...||..|.|.+..  +.|... +         .++.|++    ++|.+..+++..|.  ++++|+.|++++|.++.+.+
T Consensus        43 ~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L----~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~  116 (452)
T 3zyi_A           43 PQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNL----MENNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEV  116 (452)
T ss_dssp             -CCCCTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEEC----CSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECT
T ss_pred             cCCCCCCCEECCCCcEEEECCCCcCccCCCCCCCccEEEC----cCCcCceECHHHcC--CCCCCCEEECCCCccCCcCh
Confidence            45799999997643  333222 1         5677777    77777777777776  66777777777777777776


Q ss_pred             ccccCCcCCcEEeCCCCCCccccC
Q psy17697         85 DAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        85 ~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      ..|.++++|+.|+|++|.++.+++
T Consensus       117 ~~~~~l~~L~~L~L~~n~l~~~~~  140 (452)
T 3zyi_A          117 GAFNGLASLNTLELFDNWLTVIPS  140 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCSBCCT
T ss_pred             hhccCcccCCEEECCCCcCCccCh
Confidence            667777777777777777766654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.11  E-value=8.1e-11  Score=81.33  Aligned_cols=85  Identities=15%  Similarity=0.344  Sum_probs=63.8

Q ss_pred             CCCCCCCcccc-cCceeEEE-E--------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCC-CcccCccc
Q psy17697         18 GLTVESCFNTW-LSVGKHHA-L--------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDA   86 (110)
Q Consensus        18 ~~cp~~c~c~~-~~~~~~~~-l--------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~-l~~i~~~~   86 (110)
                      +.||..|.|.. ......+. +        .++.+++    ++|.++.+++..|.  ++++|+.+++++|. ++.+++.+
T Consensus         2 ~~cp~~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l----~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~   75 (239)
T 2xwt_C            2 GCSSPPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKL----IETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHS   75 (239)
T ss_dssp             -CCSSSCSEEECSTTEEEECSCSSCCCCCTTCCEEEE----ESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTT
T ss_pred             CCCCCCCeeCCCCcceeEccCccccCCCCCcccEEEE----eCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhH
Confidence            46999999987 55542221 1        5777888    88888888887777  67888888888885 88887777


Q ss_pred             ccCCcCCcEEeCCC-CCCccccC
Q psy17697         87 FSGLGILIELDLTK-NRIHTLHP  108 (110)
Q Consensus        87 f~~l~~L~~l~Ls~-N~l~~l~~  108 (110)
                      |.++++|+.|++++ |.++.+++
T Consensus        76 f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           76 FYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             EESCTTCCEEEEEEETTCCEECT
T ss_pred             cCCCcCCcEEECCCCCCeeEcCH
Confidence            88888888888887 78877764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.10  E-value=2e-10  Score=85.89  Aligned_cols=86  Identities=29%  Similarity=0.361  Sum_probs=60.1

Q ss_pred             cCCCCCCCccccc--CceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc
Q psy17697         17 LGLTVESCFNTWL--SVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP   84 (110)
Q Consensus        17 ~~~cp~~c~c~~~--~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~   84 (110)
                      ...||..|.|...  .+.|... +         .++.|++    ++|.+..++...|.  ++++|+.|++++|.++.+.+
T Consensus        32 ~~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L----~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~  105 (440)
T 3zyj_A           32 AQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNL----HENQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEI  105 (440)
T ss_dssp             -CCCCSSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEEC----CSCCCCEECTTTTS--SCSSCCEEECCSSCCCEECG
T ss_pred             cccCCCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEc----cCCcCCeeCHHHhh--CCCCCCEEECCCCcCCccCh
Confidence            5679999999753  3333332 1         5677777    77777777777776  67777777777777777777


Q ss_pred             ccccCCcCCcEEeCCCCCCccccC
Q psy17697         85 DAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        85 ~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .+|.++++|+.|+|++|.++.+++
T Consensus       106 ~~~~~l~~L~~L~L~~n~l~~~~~  129 (440)
T 3zyj_A          106 GAFNGLANLNTLELFDNRLTTIPN  129 (440)
T ss_dssp             GGGTTCSSCCEEECCSSCCSSCCT
T ss_pred             hhccCCccCCEEECCCCcCCeeCH
Confidence            777777777777777777776654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.07  E-value=2.5e-10  Score=85.75  Aligned_cols=84  Identities=27%  Similarity=0.363  Sum_probs=66.0

Q ss_pred             CCCCCCccccc--CceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCccc
Q psy17697         19 LTVESCFNTWL--SVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDA   86 (110)
Q Consensus        19 ~cp~~c~c~~~--~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~   86 (110)
                      .||..|.|...  .+.|... +         .++.|++    ++|.+..+++..|.  .+++|+.|++++|.++.+.+.+
T Consensus         2 ~Cp~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L----~~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~   75 (477)
T 2id5_A            2 GCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDL----GKNRIKTLNQDEFA--SFPHLEELELNENIVSAVEPGA   75 (477)
T ss_dssp             CCSTTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEEC----CSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTT
T ss_pred             cccCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEEC----CCCccceECHhHcc--CCCCCCEEECCCCccCEeChhh
Confidence            69999999753  3444333 2         7778888    88888888888887  6788888888888888888877


Q ss_pred             ccCCcCCcEEeCCCCCCccccC
Q psy17697         87 FSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        87 f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      |..+++|+.|+|++|.++.+++
T Consensus        76 ~~~l~~L~~L~L~~n~l~~~~~   97 (477)
T 2id5_A           76 FNNLFNLRTLGLRSNRLKLIPL   97 (477)
T ss_dssp             TTTCTTCCEEECCSSCCCSCCT
T ss_pred             hhCCccCCEEECCCCcCCccCc
Confidence            8888888888888888877765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.06  E-value=2.4e-10  Score=79.03  Aligned_cols=83  Identities=27%  Similarity=0.376  Sum_probs=50.2

Q ss_pred             CCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccC
Q psy17697         20 TVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSG   89 (110)
Q Consensus        20 cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~   89 (110)
                      ....|.|.|..+.|... +         .++.|++    ++|.+..+++..|.  ++++|+.|++++|+++.+++..|..
T Consensus        13 ~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~L----s~n~i~~~~~~~~~--~l~~L~~L~L~~N~l~~i~~~~~~~   86 (229)
T 3e6j_A           13 CPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYL----HDNQITKLEPGVFD--SLINLKELYLGSNQLGALPVGVFDS   86 (229)
T ss_dssp             CCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEc----CCCccCccCHHHhh--CccCCcEEECCCCCCCCcChhhccc
Confidence            34567788877766543 1         5566666    66666666655555  4556666666666666665555555


Q ss_pred             CcCCcEEeCCCCCCccccC
Q psy17697         90 LGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        90 l~~L~~l~Ls~N~l~~l~~  108 (110)
                      +++|+.|+|++|.|+.+++
T Consensus        87 l~~L~~L~Ls~N~l~~l~~  105 (229)
T 3e6j_A           87 LTQLTVLDLGTNQLTVLPS  105 (229)
T ss_dssp             CTTCCEEECCSSCCCCCCT
T ss_pred             CCCcCEEECCCCcCCccCh
Confidence            6666666666666555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.05  E-value=1.3e-10  Score=84.74  Aligned_cols=83  Identities=19%  Similarity=0.261  Sum_probs=65.7

Q ss_pred             CCCC-CcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCC-cccCcccc
Q psy17697         20 TVES-CFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNI-TDIDPDAF   87 (110)
Q Consensus        20 cp~~-c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l-~~i~~~~f   87 (110)
                      ||.+ |.|.+..+.|... +         ++++|++    ++|.|+.+|+++|.  ++++|+.|++++|.+ +.+++.+|
T Consensus         2 Cp~~~C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~L----s~N~i~~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~~f   75 (350)
T 4ay9_X            2 CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRF----VLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADVF   75 (350)
T ss_dssp             CCCSSSEEETTEEEEESTTCCSCCTTCCTTCSEEEE----ESCCCSEECTTSST--TCTTCCEEEEECCTTCCEECTTSB
T ss_pred             CCCCccEeeCCEEEecCCCCCccCcCcCCCCCEEEc----cCCcCCCcCHHHHc--CCCCCCEEECcCCCCCCccChhHh
Confidence            8865 9999888877654 2         7889999    99999999999998  789999999999986 44666777


Q ss_pred             cCCcCCcE-EeCCCCCCccccC
Q psy17697         88 SGLGILIE-LDLTKNRIHTLHP  108 (110)
Q Consensus        88 ~~l~~L~~-l~Ls~N~l~~l~~  108 (110)
                      .+++++.. +.+..|+++.+++
T Consensus        76 ~~L~~l~~~l~~~~N~l~~l~~   97 (350)
T 4ay9_X           76 SNLPKLHEIRIEKANNLLYINP   97 (350)
T ss_dssp             CSCTTCCEEEEEEETTCCEECT
T ss_pred             hcchhhhhhhcccCCcccccCc
Confidence            77777654 5556677777654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.03  E-value=3.4e-10  Score=81.47  Aligned_cols=88  Identities=30%  Similarity=0.385  Sum_probs=75.6

Q ss_pred             cccCCCCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc
Q psy17697         15 DQLGLTVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP   84 (110)
Q Consensus        15 ~~~~~cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~   84 (110)
                      +....||..|.|.+....+... +         .++.+++    ++|.+..+++..|.  .+++|+.+++++|.++.+.+
T Consensus        20 ~~~~~cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L----~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~   93 (330)
T 1xku_A           20 PMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDL----QNNKITEIKDGDFK--NLKNLHTLILINNKISKISP   93 (330)
T ss_dssp             --CCCCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEEC----CSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCT
T ss_pred             cccCCCCCCCcCCCeEEEecCCCccccCccCCCCCeEEEC----CCCcCCEeChhhhc--cCCCCCEEECCCCcCCeeCH
Confidence            3456699999998876665433 1         7889999    99999999998898  78999999999999999999


Q ss_pred             ccccCCcCCcEEeCCCCCCccccC
Q psy17697         85 DAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        85 ~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      ..|..+++|+.|++++|.++.+|.
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~l~~  117 (330)
T 1xku_A           94 GAFAPLVKLERLYLSKNQLKELPE  117 (330)
T ss_dssp             TTTTTCTTCCEEECCSSCCSBCCS
T ss_pred             HHhcCCCCCCEEECCCCcCCccCh
Confidence            889999999999999999998875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.03  E-value=1.2e-10  Score=82.92  Aligned_cols=82  Identities=26%  Similarity=0.290  Sum_probs=66.7

Q ss_pred             CCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccC--cccc
Q psy17697         20 TVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDID--PDAF   87 (110)
Q Consensus        20 cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~--~~~f   87 (110)
                      ||..|.|.|..+.|... +         .++.|++    ++|.+..+|...|.  .+++|+.+++++|.++.+.  +..+
T Consensus         1 CP~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L----~~n~l~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~   74 (306)
T 2z66_A            1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLEL----ESNKLQSLPHGVFD--KLTQLTKLSLSSNGLSFKGCCSQSD   74 (306)
T ss_dssp             CCTTCEEETTEEECCSSCCSSCCSCCCTTCCEEEC----CSSCCCCCCTTTTT--TCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred             CcCCCeeCCCEEEcCCCCcccCCCCCCCCCCEEEC----CCCccCccCHhHhh--ccccCCEEECCCCccCcccCccccc
Confidence            89999999987777654 2         7889999    99999999999998  7899999999999988664  3445


Q ss_pred             cCCcCCcEEeCCCCCCcccc
Q psy17697         88 SGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        88 ~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      ..+++|+.|++++|.++.++
T Consensus        75 ~~~~~L~~L~Ls~n~i~~l~   94 (306)
T 2z66_A           75 FGTTSLKYLDLSFNGVITMS   94 (306)
T ss_dssp             HSCSCCCEEECCSCSEEEEE
T ss_pred             ccccccCEEECCCCccccCh
Confidence            56777777777777776654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.03  E-value=3.6e-10  Score=79.78  Aligned_cols=84  Identities=32%  Similarity=0.492  Sum_probs=62.7

Q ss_pred             CCCCCCcccccC---ceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcc
Q psy17697         19 LTVESCFNTWLS---VGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPD   85 (110)
Q Consensus        19 ~cp~~c~c~~~~---~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~   85 (110)
                      .||..|.|....   +.|... +         .++.|++    ++|.+..+++..|.  .+++|+.+++++|.++.+.+.
T Consensus         1 ~CP~~C~C~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~l----~~n~i~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~   74 (285)
T 1ozn_A            1 PCPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFL----HGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAA   74 (285)
T ss_dssp             CCCTTCEEECSSSCEEECCSSCCSSCCTTCCTTCSEEEC----TTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTT
T ss_pred             CcCCCceECCCCCeEEEcCcCCcccCCcCCCCCceEEEe----eCCcCCccCHHHcc--cCCCCCEEECCCCccceeCHh
Confidence            499999997654   333222 1         6778888    88888888887777  678888888888888888777


Q ss_pred             cccCCcCCcEEeCCCCC-CccccC
Q psy17697         86 AFSGLGILIELDLTKNR-IHTLHP  108 (110)
Q Consensus        86 ~f~~l~~L~~l~Ls~N~-l~~l~~  108 (110)
                      .|..+++|+.|++++|. ++.+++
T Consensus        75 ~~~~l~~L~~L~l~~n~~l~~~~~   98 (285)
T 1ozn_A           75 AFTGLALLEQLDLSDNAQLRSVDP   98 (285)
T ss_dssp             TTTTCTTCCEEECCSCTTCCCCCT
T ss_pred             hcCCccCCCEEeCCCCCCccccCH
Confidence            77778888888888886 666643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.01  E-value=4e-10  Score=81.27  Aligned_cols=86  Identities=30%  Similarity=0.437  Sum_probs=75.1

Q ss_pred             cCCCCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCccc
Q psy17697         17 LGLTVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDA   86 (110)
Q Consensus        17 ~~~cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~   86 (110)
                      ...||..|.|.+....+... +         .++.|++    ++|.+..+++..|.  ++++|+.+++++|.++.+.+..
T Consensus        24 ~~~cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l----~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~   97 (332)
T 2ft3_A           24 SAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDL----QNNDISELRKDDFK--GLQHLYALVLVNNKISKIHEKA   97 (332)
T ss_dssp             -CCCCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEEC----CSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECGGG
T ss_pred             cCCCCCCCcccCCEEECCCCCccccCCCCCCCCeEEEC----CCCcCCccCHhHhh--CCCCCcEEECCCCccCccCHhH
Confidence            55699999998876666443 1         7889999    99999999998888  7899999999999999999998


Q ss_pred             ccCCcCCcEEeCCCCCCccccC
Q psy17697         87 FSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        87 f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      |..+++|+.|++++|.++.+|.
T Consensus        98 ~~~l~~L~~L~L~~n~l~~l~~  119 (332)
T 2ft3_A           98 FSPLRKLQKLYISKNHLVEIPP  119 (332)
T ss_dssp             STTCTTCCEEECCSSCCCSCCS
T ss_pred             hhCcCCCCEEECCCCcCCccCc
Confidence            9999999999999999998875

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.93  E-value=2.2e-09  Score=73.87  Aligned_cols=65  Identities=35%  Similarity=0.474  Sum_probs=50.1

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..+|+..|.  ++++|+.|++++|.++.+.+..|..+++|+.|+|++|.++.+++
T Consensus        81 ~L~~L~L----s~N~l~~l~~~~f~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  145 (220)
T 2v9t_B           81 SLNSLVL----YGNKITELPKSLFE--GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK  145 (220)
T ss_dssp             SCCEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CCCEEEC----CCCcCCccCHhHcc--CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence            6677777    77777777777777  67778888888888877777777777788888888888777665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.91  E-value=1.5e-09  Score=75.67  Aligned_cols=64  Identities=28%  Similarity=0.413  Sum_probs=34.1

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.|++    ++|.+..+++..|.  ++++|+.|++++|.++.+.+..|..+++|+.|++++|.++.++
T Consensus        36 ~l~~L~L----~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~   99 (251)
T 3m19_A           36 DTEKLDL----QSTGLATLSDATFR--GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP   99 (251)
T ss_dssp             TCCEEEC----TTSCCCCCCTTTTT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred             CCCEEEc----cCCCcCccCHhHhc--CcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC
Confidence            4555555    55555555555555  4555555555555555555554555555555555555554444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.88  E-value=3.3e-09  Score=71.46  Aligned_cols=65  Identities=31%  Similarity=0.484  Sum_probs=57.3

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.++.+++..|.  ++++|+.|++++|.++.+++..|.++++|+.|++++|+++.+++
T Consensus        55 ~L~~L~L----s~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  119 (192)
T 1w8a_A           55 HLVKLEL----KRNQLTGIEPNAFE--GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP  119 (192)
T ss_dssp             TCCEEEC----CSSCCCCBCTTTTT--TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred             CCCEEEC----CCCCCCCcCHhHcC--CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH
Confidence            6788999    99999998888888  78899999999999999988888889999999999999887754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.88  E-value=4e-09  Score=72.83  Aligned_cols=65  Identities=29%  Similarity=0.326  Sum_probs=49.8

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..++...|.  ++++|+.|++++|.++.+++..|..+++|+.|++++|.|+.+|.
T Consensus        65 ~L~~L~L----~~N~l~~i~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~  129 (229)
T 3e6j_A           65 NLKELYL----GSNQLGALPVGVFD--SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPR  129 (229)
T ss_dssp             TCCEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred             CCcEEEC----CCCCCCCcChhhcc--cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCc
Confidence            6777778    88888878777777  67778888888888887777777777777777777777777654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.87  E-value=3.2e-09  Score=77.09  Aligned_cols=84  Identities=30%  Similarity=0.372  Sum_probs=54.5

Q ss_pred             cCCCCCCCcccccCceeEEE---E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc
Q psy17697         17 LGLTVESCFNTWLSVGKHHA---L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP   84 (110)
Q Consensus        17 ~~~cp~~c~c~~~~~~~~~~---l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~   84 (110)
                      ...|+..|.|.|... |.+.   +         .++.|++    ++|.+..++...|.  ++++|+.+++++|.++.+.+
T Consensus        21 ~~~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l----~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~   93 (353)
T 2z80_A           21 ESSNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDL----SNNRITYISNSDLQ--RCVNLQALVLTSNGINTIEE   93 (353)
T ss_dssp             ------CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEEC----TTSCCCEECTTTTT--TCTTCCEEECTTSCCCEECT
T ss_pred             cCCCccCCCCCCCeE-eeCCCCCcccccccccccCcEEEC----CCCcCcccCHHHhc--cCCCCCEEECCCCccCccCH
Confidence            344777777777654 3332   1         6777777    77777777777776  56777777777777777777


Q ss_pred             ccccCCcCCcEEeCCCCCCcccc
Q psy17697         85 DAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        85 ~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      ..|..+++|+.|++++|.++.++
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~~~  116 (353)
T 2z80_A           94 DSFSSLGSLEHLDLSYNYLSNLS  116 (353)
T ss_dssp             TTTTTCTTCCEEECCSSCCSSCC
T ss_pred             hhcCCCCCCCEEECCCCcCCcCC
Confidence            66777777777777777776654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.86  E-value=4.8e-09  Score=72.13  Aligned_cols=65  Identities=32%  Similarity=0.517  Sum_probs=40.6

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..+++..|.  ++++|+.|++++|.++.+.+..|..+++|+.|+|++|.++.+++
T Consensus        82 ~L~~L~L----s~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  146 (220)
T 2v70_A           82 GVNEILL----TSNRLENVQHKMFK--GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP  146 (220)
T ss_dssp             TCCEEEC----CSSCCCCCCGGGGT--TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred             CCCEEEC----CCCccCccCHhHhc--CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence            4555666    66666666666665  55666666666666666666666666666666666666666543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.85  E-value=4.9e-09  Score=69.50  Aligned_cols=62  Identities=31%  Similarity=0.400  Sum_probs=58.6

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT  105 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~  105 (110)
                      .++.|++    ++|.|..+++..|.  ++++|+.|++++|.++.+++..|..+++|+.|+|++|.++-
T Consensus        55 ~L~~L~L----s~N~l~~l~~~~f~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           55 QLTRLDL----DNNQLTVLPAGVFD--KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             TCSEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             cCCEEEC----CCCCcCccChhhcc--CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            7899999    99999999999998  79999999999999999999989999999999999998763

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.85  E-value=1.4e-08  Score=71.33  Aligned_cols=65  Identities=31%  Similarity=0.459  Sum_probs=43.3

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..+++..|.  ++++|+.|++++|.++.+++..|..+++|+.|++++|.++.+++
T Consensus        38 ~l~~L~l----~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~  102 (270)
T 2o6q_A           38 DTKKLDL----QSNKLSSLPSKAFH--RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI  102 (270)
T ss_dssp             TCSEEEC----CSSCCSCCCTTSSS--SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT
T ss_pred             CCCEEEC----cCCCCCeeCHHHhc--CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH
Confidence            4666777    77777777766666  56667777777666666666666666666666666666665553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.85  E-value=6.6e-09  Score=68.70  Aligned_cols=65  Identities=28%  Similarity=0.421  Sum_probs=52.8

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..+++..|.  ++++|+.+++++|.++.+++..|..+++|+.+++++|.++.+++
T Consensus        53 ~L~~L~l----~~n~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  117 (177)
T 2o6r_A           53 QLTKLSL----SQNQIQSLPDGVFD--KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD  117 (177)
T ss_dssp             TCSEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cccEEEC----CCCcceEeChhHcc--CCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCH
Confidence            6778888    88888888888777  67888888888888888887777788888888888888887765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.85  E-value=2.6e-09  Score=79.42  Aligned_cols=85  Identities=24%  Similarity=0.251  Sum_probs=59.3

Q ss_pred             CCCCCCCcccccCceeEEE-E--------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCc-ccCcccc
Q psy17697         18 GLTVESCFNTWLSVGKHHA-L--------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNIT-DIDPDAF   87 (110)
Q Consensus        18 ~~cp~~c~c~~~~~~~~~~-l--------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~-~i~~~~f   87 (110)
                      ..||..|.|....+.|... +        .++.|++    ++|.+..+++..|.  ++++|+.|++++|.+. .+++..|
T Consensus         2 ~p~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~L----s~n~i~~~~~~~~~--~l~~L~~L~L~~n~~~~~i~~~~~   75 (455)
T 3v47_A            2 DPGTSECSVIGYNAICINRGLHQVPELPAHVNYVDL----SLNSIAELNETSFS--RLQDLQFLKVEQQTPGLVIRNNTF   75 (455)
T ss_dssp             -----CCEEETTEEECCSSCCSSCCCCCTTCCEEEC----CSSCCCEECTTTTS--SCTTCCEEECCCCSTTCEECTTTT
T ss_pred             CCccceeEEEccccCcCCCCcccCCCCCCccCEEEe----cCCccCcCChhHhc--cCccccEEECcCCcccceECcccc
Confidence            4588888887766666544 2        6778888    88888888777777  6778888888888775 5666777


Q ss_pred             cCCcCCcEEeCCCCCCccccC
Q psy17697         88 SGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        88 ~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++++|+.|++++|.++.+++
T Consensus        76 ~~l~~L~~L~Ls~n~l~~~~~   96 (455)
T 3v47_A           76 RGLSSLIILKLDYNQFLQLET   96 (455)
T ss_dssp             TTCTTCCEEECTTCTTCEECT
T ss_pred             cccccCCEEeCCCCccCccCh
Confidence            777788888888887776643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.84  E-value=3.8e-09  Score=80.74  Aligned_cols=65  Identities=28%  Similarity=0.415  Sum_probs=60.1

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.|+.+++++|.  ++++|+.|++++|+++.++++.|.++++|+.|++++|.++.+++
T Consensus        77 ~L~~L~L----s~N~i~~i~~~~f~--~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~  141 (635)
T 4g8a_A           77 ELQVLDL----SRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN  141 (635)
T ss_dssp             TCCEEEC----TTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTT
T ss_pred             CCCEEEC----CCCcCCCcChhHhc--CCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCCh
Confidence            7889999    99999999999998  78999999999999999999999999999999999999988875

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.81  E-value=8.2e-09  Score=68.78  Aligned_cols=64  Identities=27%  Similarity=0.354  Sum_probs=59.6

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.|++    ++|.|+.+|...|.  ++++|+.|++++|+++.+++..|..+++|+.+++++|.++..+
T Consensus        58 ~L~~L~L----s~N~l~~i~~~~~~--~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           58 NLQQLYF----NSNKLTAIPTGVFD--KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             TCCEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             CCCEEEC----CCCCCCccChhHhC--CcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            7899999    99999999999998  7899999999999999999988999999999999999987543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.80  E-value=6.9e-09  Score=79.78  Aligned_cols=84  Identities=25%  Similarity=0.327  Sum_probs=61.6

Q ss_pred             CCCCCCcccccCceeEEE---E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCccc
Q psy17697         19 LTVESCFNTWLSVGKHHA---L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDA   86 (110)
Q Consensus        19 ~cp~~c~c~~~~~~~~~~---l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~   86 (110)
                      .|+..|.|........+.   +         .++.+++    ++|.++.+++..|.  ++++|+.|++++|.++.+.+.+
T Consensus         3 ~~~~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~L----s~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~   76 (606)
T 3t6q_A            3 SSDQKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEF----SFNVLPTIQNTTFS--RLINLTFLDLTRCQIYWIHEDT   76 (606)
T ss_dssp             ---CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEEC----TTCCCSEECTTTST--TCTTCSEEECTTCCCCEECTTT
T ss_pred             cccCceecccCCceEECCCCCcccCcCCCCCcCcEEEc----cCCccCcCChhHhc--cCccceEEECCCCccceeChhh
Confidence            578888886433322222   1         6788888    88888888888887  6888888888888888888888


Q ss_pred             ccCCcCCcEEeCCCCCCccccC
Q psy17697         87 FSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        87 f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      |.++++|+.|++++|.++.+++
T Consensus        77 ~~~l~~L~~L~Ls~n~l~~~~~   98 (606)
T 3t6q_A           77 FQSQHRLDTLVLTANPLIFMAE   98 (606)
T ss_dssp             TTTCTTCCEEECTTCCCSEECT
T ss_pred             ccCccccCeeeCCCCcccccCh
Confidence            8888888888888888877654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.80  E-value=1.2e-08  Score=68.99  Aligned_cols=62  Identities=24%  Similarity=0.398  Sum_probs=51.6

Q ss_pred             EEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697         41 VLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG  109 (110)
Q Consensus        41 ~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~  109 (110)
                      .|++    ++|.++.+| ..|.  ++++|+.|++++|.++.+++..|.++++|+.|+|++|.|+.++++
T Consensus        35 ~L~L----~~n~i~~ip-~~~~--~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~   96 (193)
T 2wfh_A           35 ELYL----DGNQFTLVP-KELS--NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR   96 (193)
T ss_dssp             EEEC----CSSCCCSCC-GGGG--GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred             EEEC----CCCcCchhH-HHhh--cccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHH
Confidence            3556    777777776 4566  688899999999999999998899999999999999999988763

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.78  E-value=1.4e-08  Score=70.59  Aligned_cols=65  Identities=28%  Similarity=0.417  Sum_probs=33.7

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..+++..|.  ++++|+.|++++|.++.+++..|..+++|+.|++++|.++.+++
T Consensus       108 ~L~~L~L----~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A          108 QLDKLYL----GGNQLKSLPSGVFD--RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             TCCEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CCCEEEc----CCCcCCCcChhHhc--cCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            3444455    55555555554444  44555555555555555555445555555555555555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.77  E-value=1.4e-08  Score=72.44  Aligned_cols=57  Identities=28%  Similarity=0.391  Sum_probs=27.4

Q ss_pred             CCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      ++|.+..+++..|.  .+++|+.|++++|+++.+++..|..+++|+.|++++|+++.+|
T Consensus       132 ~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip  188 (290)
T 1p9a_G          132 KGNELKTLPPGLLT--PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP  188 (290)
T ss_dssp             TTSCCCCCCTTTTT--TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCCCCCccChhhcc--cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC
Confidence            44444444444444  3444444444444444444444444445555555555544444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.77  E-value=1.5e-08  Score=72.30  Aligned_cols=66  Identities=32%  Similarity=0.487  Sum_probs=62.0

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG  109 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~  109 (110)
                      .++.|++    ++|.++.+++..|.  ++++|+.|++++|+++.+++..|..+++|+.|++++|+++.+|++
T Consensus       101 ~L~~L~l----~~N~l~~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  166 (290)
T 1p9a_G          101 ALTVLDV----SFNRLTSLPLGALR--GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG  166 (290)
T ss_dssp             TCCEEEC----CSSCCCCCCSSTTT--TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred             CCCEEEC----CCCcCcccCHHHHc--CCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHH
Confidence            7889999    99999999999998  799999999999999999999999999999999999999998863

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.76  E-value=1.7e-08  Score=68.13  Aligned_cols=65  Identities=25%  Similarity=0.432  Sum_probs=35.6

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..+++..|.  ++++|+.+++++|.++.+++..|..+++|+.|++++|.++.+++
T Consensus        77 ~L~~L~L----s~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  141 (208)
T 2o6s_A           77 SLTYLNL----STNQLQSLPNGVFD--KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD  141 (208)
T ss_dssp             TCCEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCEEEC----CCCcCCccCHhHhc--CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence            4455555    55555555555554  45555555555555555555555555555555555555555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.74  E-value=3.3e-08  Score=63.52  Aligned_cols=66  Identities=20%  Similarity=0.247  Sum_probs=55.9

Q ss_pred             CCCCCCcccccCceeEEEEeeeEEEEeeCCCCccCC--CCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEE
Q psy17697         19 LTVESCFNTWLSVGKHHALAARVLKLKIGEKSNNIP--HLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIEL   96 (110)
Q Consensus        19 ~cp~~c~c~~~~~~~~~~l~l~~l~l~~~~~~n~l~--~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l   96 (110)
                      .||..|.|...           .++-    +++.++  .+|....     .+++.|+|++|+|+.++++.|..+++|+.+
T Consensus         1 ~CP~~C~C~~~-----------~v~C----s~~~L~~~~vP~~lp-----~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L   60 (130)
T 3rfe_A            1 PCPAPCSCAGT-----------LVDC----GRRGLTWASLPTAFP-----VDTTELVLTGNNLTALPPGLLDALPALRTA   60 (130)
T ss_dssp             CCCTTCEEETT-----------EEEC----CSSCCCTTTSCSCCC-----TTCSEEECTTSCCSSCCTTTGGGCTTCCEE
T ss_pred             CcCCCCEEcCC-----------EEEe----CCCCCccccCCCCCC-----cCCCEEECCCCcCCccChhhhhhccccCEE
Confidence            49999999643           5566    899998  8887643     468999999999999999999999999999


Q ss_pred             eCCCCCCc
Q psy17697         97 DLTKNRIH  104 (110)
Q Consensus        97 ~Ls~N~l~  104 (110)
                      +|++|.+.
T Consensus        61 ~L~~NP~~   68 (130)
T 3rfe_A           61 HLGANPWR   68 (130)
T ss_dssp             ECCSSCCB
T ss_pred             EecCCCee
Confidence            99999764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.70  E-value=2.6e-08  Score=69.85  Aligned_cols=64  Identities=33%  Similarity=0.449  Sum_probs=37.4

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.|++    ++|.+..++...|.  ++++|+.+++++|.++.+++..|..+++|+.|++++|.++.++
T Consensus        29 ~l~~L~l----s~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~   92 (276)
T 2z62_A           29 STKNLDL----SFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA   92 (276)
T ss_dssp             TCCEEEC----TTCCCCEECTTTTT--TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred             CccEEEC----CCCcccccCHhHhc--cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence            3555666    66666665555555  4555666666666666655555555566666666666555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.69  E-value=1.6e-08  Score=73.94  Aligned_cols=64  Identities=33%  Similarity=0.430  Sum_probs=36.5

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.|++    ++|.+..+++..|.  ++++|+.|++++|.++.+.+..|..+++|+.|+|++|.|+.+|
T Consensus        89 ~L~~L~L----s~N~l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~  152 (361)
T 2xot_A           89 NLRYLDL----SSNHLHTLDEFLFS--DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP  152 (361)
T ss_dssp             TCCEEEC----CSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred             CCCEEEC----CCCcCCcCCHHHhC--CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence            4555555    55555555555555  4555555555555555555555555555555555555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.67  E-value=4.7e-08  Score=68.62  Aligned_cols=65  Identities=26%  Similarity=0.385  Sum_probs=37.6

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..++...|.  .+++|+.+++++|.++.+++..|..+++|+.|++++|.++.+++
T Consensus       134 ~L~~L~L----s~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (270)
T 2o6q_A          134 KLTYLSL----GYNELQSLPKGVFD--KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE  198 (270)
T ss_dssp             TCCEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CCCEEEC----CCCcCCccCHhHcc--CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence            4455555    55555555555555  45556666666666666655555556666666666666655543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.63  E-value=5e-08  Score=74.80  Aligned_cols=66  Identities=26%  Similarity=0.259  Sum_probs=61.5

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG  109 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~  109 (110)
                      .++.|++    ++|.+..+++..|.  ++++|+.|++++|.++.+.+.+|.++++|+.|++++|.++.+|..
T Consensus        53 ~L~~L~L----s~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~  118 (562)
T 3a79_B           53 RTKALSL----SQNSISELRMPDIS--FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC  118 (562)
T ss_dssp             TCCEEEC----CSSCCCCCCGGGTT--TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC
T ss_pred             CcCEEEC----CCCCccccChhhhc--cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc
Confidence            7889999    99999999999998  799999999999999999999999999999999999999988753

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.61  E-value=4e-08  Score=74.57  Aligned_cols=63  Identities=38%  Similarity=0.547  Sum_probs=32.1

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      .++++++    ++|.+..+++..|.  ++++|+.|++++|.++.+++.+|..+++|+.|++++|.++.+
T Consensus        27 ~L~~L~L----s~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~   89 (549)
T 2z81_A           27 AMKSLDL----SFNKITYIGHGDLR--ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL   89 (549)
T ss_dssp             TCCEEEC----CSSCCCEECSSTTS--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred             CccEEEC----cCCccCccChhhhh--cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence            4455555    55555555444444  445555555555555555544455555555555555554443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.61  E-value=5.7e-08  Score=74.65  Aligned_cols=64  Identities=30%  Similarity=0.432  Sum_probs=39.2

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.+++    ++|.+..+++..|.  ++++|+.+++++|.++.+.+.+|..+++|+.|++++|.++.++
T Consensus        33 ~l~~L~L----s~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~   96 (606)
T 3vq2_A           33 STKNIDL----SFNPLKILKSYSFS--NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS   96 (606)
T ss_dssp             TCCEEEC----TTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC
T ss_pred             CcCEEEC----CCCCcCEeChhhcc--CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccC
Confidence            4556666    66666666666665  5566666666666666666655666666666666666665553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.60  E-value=1e-07  Score=67.02  Aligned_cols=64  Identities=31%  Similarity=0.451  Sum_probs=32.1

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.|++    ++|.+..+++..|.  ++++|+.|++++|.++.+++..|..+++|+.|++++|.++.++
T Consensus       110 ~L~~L~L----~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  173 (272)
T 3rfs_A          110 NLKELVL----VENQLQSLPDGVFD--KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP  173 (272)
T ss_dssp             TCCEEEC----TTSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCCEEEC----CCCcCCccCHHHhc--cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence            3444445    55555554444444  3445555555555555554444445555555555555554444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.58  E-value=1.2e-07  Score=66.68  Aligned_cols=64  Identities=27%  Similarity=0.403  Sum_probs=30.9

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.|++    ++|.+..+++..|.  .+++|+.+++++|.++.+++..|..+++|+.|++++|.++.++
T Consensus       134 ~L~~L~L----~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (272)
T 3rfs_A          134 NLTYLNL----AHNQLQSLPKGVFD--KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP  197 (272)
T ss_dssp             TCCEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCCEEEC----CCCccCccCHHHhc--cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence            3444444    45555544444444  3444555555555554444444444445555555555444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.57  E-value=7.5e-08  Score=71.87  Aligned_cols=65  Identities=28%  Similarity=0.504  Sum_probs=54.7

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..+++..|.  ++++|+.|++++|+++.+.+..|..+++|+.|+|++|+++.+++
T Consensus       208 ~L~~L~L----s~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  272 (440)
T 3zyj_A          208 KLDELDL----SGNHLSAIRPGSFQ--GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH  272 (440)
T ss_dssp             SCCEEEC----TTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred             ccCEEEC----CCCccCccChhhhc--cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence            6777888    88888888788887  78888888888888888888888888889999999998888775

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.57  E-value=1e-07  Score=72.41  Aligned_cols=64  Identities=28%  Similarity=0.427  Sum_probs=34.2

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .+++|++    ++|.+..+++..|.  ++++|+.|++++|.++.+++..|.++++|+.|++++|.++.++
T Consensus        53 ~L~~L~L----s~n~i~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~  116 (570)
T 2z63_A           53 ELQVLDL----SRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE  116 (570)
T ss_dssp             SCCEEEC----TTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred             CceEEEC----CCCcCCccCccccc--CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCC
Confidence            4445555    55555555555554  4555555555555555555555555555555555555555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.57  E-value=8.4e-08  Score=71.82  Aligned_cols=65  Identities=37%  Similarity=0.428  Sum_probs=57.5

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..+++..|.  ++++|+.|++++|.++.+++..|..+++|+.|++++|.++.+++
T Consensus       100 ~L~~L~L----s~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  164 (452)
T 3zyi_A          100 HLEVLQL----GRNSIRQIEVGAFN--GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS  164 (452)
T ss_dssp             TCCEEEC----CSSCCCEECTTTTT--TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT
T ss_pred             CCCEEEC----CCCccCCcChhhcc--CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCH
Confidence            7888999    99999999888888  78899999999999999988888889999999999998888765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.55  E-value=6e-08  Score=64.13  Aligned_cols=64  Identities=19%  Similarity=0.306  Sum_probs=35.6

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc-ccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~-~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.+++    ++|.+..+++..|.  ++++|+.+++++|.++.++. ..+..+++|+.+++++|.++.+|
T Consensus        65 ~L~~L~L----s~N~l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~  129 (176)
T 1a9n_A           65 RLKTLLV----NNNRICRIGEGLDQ--ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK  129 (176)
T ss_dssp             SCCEEEC----CSSCCCEECSCHHH--HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             CCCEEEC----CCCcccccCcchhh--cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH
Confidence            4555555    55655555555544  45556666666666555543 23555555666666666555544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.53  E-value=5.4e-08  Score=75.80  Aligned_cols=57  Identities=25%  Similarity=0.307  Sum_probs=27.6

Q ss_pred             CCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      ++|.+..+++..|.  ++++|+.|++++|.++.+++..|..+++|+.|++++|.++.++
T Consensus        57 s~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  113 (680)
T 1ziw_A           57 GFNTISKLEPELCQ--KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK  113 (680)
T ss_dssp             CSSCCCCCCTTHHH--HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred             CCCccCccCHHHHh--cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccC
Confidence            44444444444443  3444555555555555554444555555555555555554443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.52  E-value=7.1e-08  Score=72.94  Aligned_cols=65  Identities=23%  Similarity=0.276  Sum_probs=52.5

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.+++    ++|.+..+++..|.  ++++|+.|++++|.++.+.+..|..+++|++|++++|.++.+|.
T Consensus        22 ~L~~L~L----s~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~   86 (520)
T 2z7x_B           22 KTTILNI----SQNYISELWTSDIL--SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC   86 (520)
T ss_dssp             TCSEEEC----CSSCCCCCCHHHHT--TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC
T ss_pred             cccEEEC----CCCcccccChhhcc--ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc
Confidence            4677888    88888888877777  67888888888888888877778888888888888888887765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.51  E-value=2.4e-07  Score=65.22  Aligned_cols=36  Identities=39%  Similarity=0.537  Sum_probs=12.9

Q ss_pred             cccEEeccCCCCcccCcccccCCcCCcEEeCCCCCC
Q psy17697         68 NLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI  103 (110)
Q Consensus        68 ~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l  103 (110)
                      +|+.+++++|.++.+++..|..+++|+.|++++|.+
T Consensus       130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  165 (285)
T 1ozn_A          130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (285)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcccccCHhHhccCCCccEEECCCCcc
Confidence            333333333333333333333333333333333333

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.51  E-value=1.4e-07  Score=64.85  Aligned_cols=65  Identities=29%  Similarity=0.427  Sum_probs=51.2

Q ss_pred             eee-EEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCC-CcccCcccccCC-cCCcEEeCCCCCCccccCC
Q psy17697         38 AAR-VLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDAFSGL-GILIELDLTKNRIHTLHPG  109 (110)
Q Consensus        38 ~l~-~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~-l~~i~~~~f~~l-~~L~~l~Ls~N~l~~l~~~  109 (110)
                      .++ .+++    ++|.+..+|...|.  + ++|+.+++++|. ++.+++..|..+ ++|+.+++++|.++.+|+.
T Consensus       156 ~L~~~L~l----~~n~l~~i~~~~~~--~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~  223 (239)
T 2xwt_C          156 NETLTLKL----YNNGFTSVQGYAFN--G-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK  223 (239)
T ss_dssp             SSEEEEEC----CSCCCCEECTTTTT--T-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred             cceeEEEc----CCCCCcccCHhhcC--C-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence            566 7777    88888888887776  4 678888888884 888888778888 8888888888888877753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.50  E-value=1.8e-07  Score=68.53  Aligned_cols=65  Identities=22%  Similarity=0.311  Sum_probs=39.7

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .+++|++    ++|.+..+++..|.  ++++|+.|++++|.++.+++..|..+++|+.|++++|.++.+|+
T Consensus        70 ~L~~L~L----~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~  134 (390)
T 3o6n_A           70 QVELLNL----NDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR  134 (390)
T ss_dssp             CCSEEEC----TTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cCcEEEC----CCCcccccChhhcc--CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH
Confidence            4556666    66666666665555  55666666666666666666555666666666666666665554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.49  E-value=8e-08  Score=63.50  Aligned_cols=63  Identities=30%  Similarity=0.332  Sum_probs=56.7

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..+  ..|.  .+++|+.+++++|.++.+++..|..+++|+.|++++|.++.+|+
T Consensus        43 ~L~~L~L----s~N~l~~~--~~l~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~  105 (176)
T 1a9n_A           43 QFDAIDF----SDNEIRKL--DGFP--LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD  105 (176)
T ss_dssp             CCSEEEC----CSSCCCEE--CCCC--CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGG
T ss_pred             CCCEEEC----CCCCCCcc--cccc--cCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchh
Confidence            6889999    99999988  4666  68999999999999999988878899999999999999988764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.47  E-value=1.7e-07  Score=67.95  Aligned_cols=65  Identities=29%  Similarity=0.341  Sum_probs=59.2

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..+++..|.  ++++|+.|++++|.++.+++..|..+++|+.|++++|.++.++.
T Consensus        77 ~L~~L~L----~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~  141 (353)
T 2z80_A           77 NLQALVL----TSNGINTIEEDSFS--SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE  141 (353)
T ss_dssp             TCCEEEC----TTSCCCEECTTTTT--TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS
T ss_pred             CCCEEEC----CCCccCccCHhhcC--CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc
Confidence            7889999    99999999888888  78999999999999999988888999999999999999988775

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.47  E-value=1.8e-07  Score=69.46  Aligned_cols=65  Identities=26%  Similarity=0.319  Sum_probs=34.6

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..+++..|.  ++++|+.|++++|.++.+.+..|..+++|+.|++++|+++.+++
T Consensus       324 ~L~~L~L----s~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  388 (455)
T 3v47_A          324 HLLKLNL----SQNFLGSIDSRMFE--NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD  388 (455)
T ss_dssp             TCCEEEC----CSSCCCEECGGGGT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cCCEEEC----CCCccCCcChhHhc--CcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCH
Confidence            4445555    55555555544444  45555555555555555555555555555555555555555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.47  E-value=3.3e-07  Score=67.11  Aligned_cols=64  Identities=20%  Similarity=0.347  Sum_probs=34.6

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.|++    ++|.+..+++..|.  ++++|+.|++++|.++.+++..|..+++|+.|++++|.++.++
T Consensus        94 ~L~~L~L----~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  157 (390)
T 3o6n_A           94 TIQKLYM----GFNAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE  157 (390)
T ss_dssp             TCCEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             CcCEEEC----CCCCCCcCCHHHhc--CCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence            4555555    55555555555554  4555555555555555555554555555555555555555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.46  E-value=2.5e-07  Score=72.08  Aligned_cols=64  Identities=27%  Similarity=0.422  Sum_probs=43.3

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.+++    ++|.+..+|...|.  ++++|+.+++++|+++.+++..|..+++|+.|++++|.++.++
T Consensus       537 ~L~~L~L----~~N~l~~i~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~  600 (680)
T 1ziw_A          537 HLHILNL----ESNGFDEIPVEVFK--DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE  600 (680)
T ss_dssp             TCCEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             CCCEEEC----CCCCCCCCCHHHcc--cccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence            3556666    66666666666666  5667777777777777776666666777777777777766654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.45  E-value=2.5e-07  Score=64.85  Aligned_cols=64  Identities=28%  Similarity=0.427  Sum_probs=39.8

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.|++    ++|.+..+++..|.  ++++|+.+++++|.++.+.+..|..+++|+.|++++|.++.++
T Consensus        53 ~L~~L~l----~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  116 (276)
T 2z62_A           53 ELQVLDL----SRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE  116 (276)
T ss_dssp             TCSEEEC----TTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred             CCcEEEC----CCCcCCccCHHHcc--CCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccC
Confidence            5566666    66666666666665  5566666666666666666555666666666666666555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.44  E-value=2.5e-07  Score=66.76  Aligned_cols=60  Identities=27%  Similarity=0.325  Sum_probs=56.1

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH  104 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~  104 (110)
                      .++.|++    ++|.|..+++..|.  ++++|+.|+|++|+++.+++..|..++ |+.|+|.+|.+.
T Consensus        57 ~L~~L~l----~~N~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           57 ELRNLTI----VKSGLRFVAPDAFH--FTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CCSEEEC----CSSCCCEECTTGGG--SCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCCEEEC----CCCccceeCHHHhc--CCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            8999999    99999999999998  799999999999999999998887766 999999999986

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.42  E-value=2.3e-07  Score=67.49  Aligned_cols=65  Identities=29%  Similarity=0.451  Sum_probs=56.9

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEecc-CCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLK-DCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG  109 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~-~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~  109 (110)
                      .++.+++    ++|.|+.++...|.   ...++.+++. .|.++.+++++|.++++|+.|++++|+|+.+|++
T Consensus       155 ~l~~L~L----~~N~i~~i~~~~f~---~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~  220 (350)
T 4ay9_X          155 ESVILWL----NKNGIQEIHNSAFN---GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY  220 (350)
T ss_dssp             SCEEEEC----CSSCCCEECTTSST---TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred             hhhhhcc----ccccccCCChhhcc---ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence            4667889    99999999999987   4678899987 5789999999999999999999999999999864

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.42  E-value=4.6e-07  Score=64.21  Aligned_cols=65  Identities=26%  Similarity=0.319  Sum_probs=49.2

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..+++..|.  .+++|+.+++++|.++.+++..|..+++|+.|++++|.++..++
T Consensus       176 ~L~~L~L----s~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          176 NLTFLDL----SQCQLEQLSPTAFN--SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             TCCEEEC----TTSCCCEECTTTTT--TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred             CCCEEEC----CCCCcCCcCHHHhc--CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence            6777777    78877777777776  67778888888888887777667777788888888887766543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.41  E-value=3.3e-07  Score=70.38  Aligned_cols=64  Identities=30%  Similarity=0.466  Sum_probs=47.5

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.|++    ++|.+..+++..|.  ++++|+.|++++|.++.+.|..|.++++|+.|++++|.++.++
T Consensus        57 ~L~~L~L----s~n~l~~i~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  120 (606)
T 3vq2_A           57 ELQWLDL----SRCEIETIEDKAWH--GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE  120 (606)
T ss_dssp             TCCEEEC----TTCCCCEECTTTTT--TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSS
T ss_pred             cCcEEeC----CCCcccccCHHHhh--chhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccc
Confidence            6777777    77777777777776  6777777777777777777777777777777777777776665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.41  E-value=2.8e-07  Score=69.06  Aligned_cols=65  Identities=28%  Similarity=0.448  Sum_probs=47.0

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..++...|.  ++++|+.|++++|.++.+.+..|..+++|+.|++++|.++.+++
T Consensus       249 ~L~~L~L----s~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  313 (477)
T 2id5_A          249 YLRFLNL----SYNPISTIEGSMLH--ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE  313 (477)
T ss_dssp             TCCEEEC----CSSCCCEECTTSCT--TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred             ccCeeEC----CCCcCCccChhhcc--ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCH
Confidence            5666777    77777777776666  56777777777777777777777777777777777777776654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.40  E-value=4.2e-07  Score=70.44  Aligned_cols=65  Identities=22%  Similarity=0.311  Sum_probs=41.2

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..+++..|.  ++++|+.|++++|.++.+++..|..+++|+.|+|++|.++.+|+
T Consensus        76 ~L~~L~L----~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~  140 (597)
T 3oja_B           76 QVELLNL----NDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR  140 (597)
T ss_dssp             CCSEEEC----TTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCcEEEC----CCCCCCCCChHHhc--CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCH
Confidence            4556666    66666666666665  56666666666666666666656666666666666666665554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.40  E-value=5.5e-07  Score=69.75  Aligned_cols=65  Identities=20%  Similarity=0.338  Sum_probs=42.4

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..+++..|.  ++++|+.|++++|.++.+++..|..+++|+.|++++|.++.+++
T Consensus       100 ~L~~L~L----~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~  164 (597)
T 3oja_B          100 TIQKLYM----GFNAIRYLPPHVFQ--NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED  164 (597)
T ss_dssp             TCCEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             CCCEEEC----CCCcCCCCCHHHHc--CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh
Confidence            5666666    66666666666665  56666666666666666666656666666666666666665544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.39  E-value=2.7e-07  Score=60.26  Aligned_cols=64  Identities=27%  Similarity=0.270  Sum_probs=30.3

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc-ccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~-~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.|++    ++|.+....+..+.  .+++|+.|++++|.++.++. ..|..+++|+.|++++|.++.++
T Consensus        72 ~L~~L~L----s~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~  136 (168)
T 2ell_A           72 KLKKLEL----SENRIFGGLDMLAE--KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN  136 (168)
T ss_dssp             SCCEEEE----ESCCCCSCCCHHHH--HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred             CCCEEEC----cCCcCchHHHHHHh--hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchH
Confidence            3444555    55555543333333  24455555555555555432 33444555555555555554443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.39  E-value=4e-07  Score=65.27  Aligned_cols=56  Identities=14%  Similarity=0.223  Sum_probs=25.8

Q ss_pred             CCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      ++|.+..++...|.  .+++|+.+++++|.++.++.. +..+++|+.+++++|.++.++
T Consensus       224 s~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~i~~~~  279 (330)
T 1xku_A          224 SFNSISAVDNGSLA--NTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIG  279 (330)
T ss_dssp             CSSCCCEECTTTGG--GSTTCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSSCCCCCC
T ss_pred             CCCcCceeChhhcc--CCCCCCEEECCCCcCccCChh-hccCCCcCEEECCCCcCCccC
Confidence            44444444444444  344444444444444444332 344444555555555544443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.38  E-value=2.7e-07  Score=60.28  Aligned_cols=66  Identities=21%  Similarity=0.301  Sum_probs=59.5

Q ss_pred             eeeEEEEeeCCCCccCCCCCc-CccCccCcccccEEeccCCCCcccCc---ccccCCcCCcEEeCCCCCCccccCC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPA-DAFRSTGLVNLHNLLLKDCNITDIDP---DAFSGLGILIELDLTKNRIHTLHPG  109 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~-~~f~~~~~~~L~~l~l~~n~l~~i~~---~~f~~l~~L~~l~Ls~N~l~~l~~~  109 (110)
                      .++.|++    ++|.+..++. ..|.  .+++|+.+++++|.++.+++   ..|..+++|+.+++++|.+..+|.+
T Consensus        96 ~L~~L~L----s~N~l~~~~~~~~l~--~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A           96 NLTHLNL----SGNKLKDISTLEPLK--KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             TCCEEEC----BSSSCCSSGGGGGGS--SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             CCCEEec----cCCccCcchhHHHHh--cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            7889999    9999999875 5666  68999999999999999987   5789999999999999999999875

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.38  E-value=4.4e-07  Score=68.95  Aligned_cols=65  Identities=32%  Similarity=0.430  Sum_probs=46.0

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..+++..|.  ++++|+.+++++|.++.+++.+|..+++|+.|++++|.++.+++
T Consensus        29 ~l~~L~L----s~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (570)
T 2z63_A           29 STKNLDL----SFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL   93 (570)
T ss_dssp             SCCEEEC----CSCCCCEECTTTTT--TCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred             cccEEEc----cCCccCccChhHhh--CCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH
Confidence            5666777    77777777776666  56777777777777777777667777777777777777766654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.35  E-value=2.8e-07  Score=66.24  Aligned_cols=63  Identities=21%  Similarity=0.259  Sum_probs=31.8

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.|++    ++|.+..+++..|.  .+++|+.+++++|.++.++.. +..+++|+.+++++|.++.++
T Consensus       218 ~L~~L~L----~~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~l~~~~  280 (332)
T 2ft3_A          218 KLYRLGL----GHNQIRMIENGSLS--FLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVG  280 (332)
T ss_dssp             TCSCCBC----CSSCCCCCCTTGGG--GCTTCCEEECCSSCCCBCCTT-GGGCTTCCEEECCSSCCCBCC
T ss_pred             CCCEEEC----CCCcCCcCChhHhh--CCCCCCEEECCCCcCeecChh-hhcCccCCEEECCCCCCCccC
Confidence            3444444    55555555544444  445555555555555544333 444555555555555555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.30  E-value=5.6e-07  Score=57.63  Aligned_cols=65  Identities=23%  Similarity=0.232  Sum_probs=39.4

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccC-cccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDID-PDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~-~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.+++    ++|.+....+..+.  .+++|+.+++++|.++.++ +..+..+++|+.+++++|.++.+++
T Consensus        65 ~L~~L~L----s~n~i~~~~~~~~~--~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           65 KLKKLEL----SDNRVSGGLEVLAE--KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             TCCEEEC----CSSCCCSCTHHHHH--HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             CCCEEEC----CCCcccchHHHHhh--hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            5566666    66666664344443  3566666666666666653 2446666667777777776665543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.29  E-value=8.1e-07  Score=69.11  Aligned_cols=63  Identities=19%  Similarity=0.243  Sum_probs=40.3

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccC-cccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDID-PDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~-~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.++.+|  .|.  ++++|+.|++++|.++.+. |..|..+++|+.|+|++|.++.+|+
T Consensus       487 ~L~~L~L----s~N~l~~lp--~l~--~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          487 CLEVLQA----SDNALENVD--GVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             TCCEEEC----CSSCCCCCG--GGT--TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCEEEC----CCCCCCCCc--ccC--CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            5556666    666666655  344  4666667777777666665 5556666777777777776666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.29  E-value=7.6e-07  Score=68.37  Aligned_cols=63  Identities=22%  Similarity=0.271  Sum_probs=40.8

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      .+++|++    ++|.+..+.+..|.  ++++|+.|++++|.++.+.+..|..+++|+.|++++|.++.+
T Consensus        58 ~L~~L~L----s~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l  120 (606)
T 3t6q_A           58 NLTFLDL----TRCQIYWIHEDTFQ--SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSI  120 (606)
T ss_dssp             TCSEEEC----TTCCCCEECTTTTT--TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCG
T ss_pred             cceEEEC----CCCccceeChhhcc--CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccC
Confidence            5666666    66666666666666  566666666666666666666666666666666666666554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.29  E-value=3.1e-07  Score=58.84  Aligned_cols=62  Identities=19%  Similarity=0.176  Sum_probs=54.6

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.+++    ++|.+..+  ..|.  .+++|+.+++++|.++...+..+..+++|+.|++++|.++.++
T Consensus        43 ~L~~L~l----~~n~l~~~--~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~  104 (149)
T 2je0_A           43 ELEFLST----INVGLTSI--ANLP--KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS  104 (149)
T ss_dssp             TCCEEEC----TTSCCCCC--TTCC--CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHH
T ss_pred             CCcEEEC----cCCCCCCc--hhhh--cCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChH
Confidence            6889999    99999998  5666  6899999999999999966776778999999999999998764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.28  E-value=8.1e-07  Score=67.36  Aligned_cols=63  Identities=35%  Similarity=0.430  Sum_probs=57.4

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      .+++|++    ++|.+..+++..|.  ++++|+.|++++|.++.+++..|..+++|+.|++++|.++.+
T Consensus        51 ~L~~L~L----s~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  113 (549)
T 2z81_A           51 NLQVLIL----KSSRINTIEGDAFY--SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL  113 (549)
T ss_dssp             TCCEEEC----TTSCCCEECTTTTT--TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSS
T ss_pred             cccEEEC----CCCCcCccChhhcc--ccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccccc
Confidence            7889999    99999999988888  789999999999999999988899999999999999998854

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.26  E-value=5.1e-07  Score=64.75  Aligned_cols=75  Identities=27%  Similarity=0.388  Sum_probs=38.0

Q ss_pred             CCcccccCceeEEE---EeeeEEEEeeCCCCccCCC---CCcCccCccCcccccEEeccC-CCCcccCcccccCCcCCcE
Q psy17697         23 SCFNTWLSVGKHHA---LAARVLKLKIGEKSNNIPH---LPADAFRSTGLVNLHNLLLKD-CNITDIDPDAFSGLGILIE   95 (110)
Q Consensus        23 ~c~c~~~~~~~~~~---l~l~~l~l~~~~~~n~l~~---~~~~~f~~~~~~~L~~l~l~~-n~l~~i~~~~f~~l~~L~~   95 (110)
                      .|.|.|.++.|...   -.++.+++    ++|.+..   +|+ .|.  .+++|+.|++++ |.+....|..|..+++|+.
T Consensus        33 ~C~~~w~gv~C~~~~~~~~l~~L~L----~~~~l~~~~~~~~-~l~--~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~  105 (313)
T 1ogq_A           33 CCNRTWLGVLCDTDTQTYRVNNLDL----SGLNLPKPYPIPS-SLA--NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY  105 (313)
T ss_dssp             TTTTCSTTEEECCSSSCCCEEEEEE----ECCCCSSCEECCG-GGG--GCTTCSEEEEEEETTEESCCCGGGGGCTTCSE
T ss_pred             CCcCCCcceEeCCCCCCceEEEEEC----CCCCccCCcccCh-hHh--CCCCCCeeeCCCCCcccccCChhHhcCCCCCE
Confidence            45666998888643   24555555    5555553   332 333  345555555552 4444433433444444444


Q ss_pred             EeCCCCCCc
Q psy17697         96 LDLTKNRIH  104 (110)
Q Consensus        96 l~Ls~N~l~  104 (110)
                      |++++|.++
T Consensus       106 L~Ls~n~l~  114 (313)
T 1ogq_A          106 LYITHTNVS  114 (313)
T ss_dssp             EEEEEECCE
T ss_pred             EECcCCeeC
Confidence            444444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.26  E-value=8.7e-07  Score=71.22  Aligned_cols=62  Identities=35%  Similarity=0.410  Sum_probs=39.1

Q ss_pred             eeeEEEEeeCCCCc-cCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697         38 AARVLKLKIGEKSN-NIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT  105 (110)
Q Consensus        38 ~l~~l~l~~~~~~n-~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~  105 (110)
                      .++.|++    ++| .+..+++..|.  ++++|+.|++++|.++.+.+..|.++++|+.|+|++|.++.
T Consensus        49 ~L~~LdL----s~n~~~~~i~~~~f~--~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  111 (844)
T 3j0a_A           49 QLQLLEL----GSQYTPLTIDKEAFR--NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD  111 (844)
T ss_dssp             SCSEEEE----CTTCCCCEECTTTTS--SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS
T ss_pred             cCeEEeC----CCCCCccccCHHHhc--CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc
Confidence            5555666    555 33445555565  56666666666666666666666666677777777666654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.24  E-value=2.4e-06  Score=65.44  Aligned_cols=62  Identities=26%  Similarity=0.325  Sum_probs=55.3

Q ss_pred             eeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697         39 ARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG  109 (110)
Q Consensus        39 l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~  109 (110)
                      .+.+++    ++|.++.+|...+     ++++.+++++|.++.+++..|..+++|+.|++++|.++.++++
T Consensus        33 ~~~l~l----s~~~L~~ip~~~~-----~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~   94 (562)
T 3a79_B           33 ESMVDY----SNRNLTHVPKDLP-----PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH   94 (562)
T ss_dssp             CCEEEC----TTSCCCSCCTTSC-----TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT
T ss_pred             CcEEEc----CCCCCccCCCCCC-----CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH
Confidence            357889    9999999998664     5799999999999999999999999999999999999988653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.20  E-value=2.4e-06  Score=60.04  Aligned_cols=60  Identities=28%  Similarity=0.465  Sum_probs=32.9

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.+++    ++|.+..++  .+.  .+++|+.|++++|.++.+++  |..+++|+.|++++|.++.++
T Consensus        42 ~L~~L~l----~~n~i~~l~--~l~--~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~  101 (263)
T 1xeu_A           42 GVQNFNG----DNSNIQSLA--GMQ--FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLN  101 (263)
T ss_dssp             TCSEEEC----TTSCCCCCT--TGG--GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCT
T ss_pred             cCcEEEC----cCCCcccch--HHh--hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcC
Confidence            4555555    555555554  233  35555566666655555544  555555555555555555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.20  E-value=1.2e-06  Score=69.77  Aligned_cols=62  Identities=27%  Similarity=0.381  Sum_probs=29.1

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.|++    ++|.+..++...|.   +++|+.|+|++|.++.++. .|..+++|+.|+|++|.|+.+|
T Consensus       225 ~L~~L~L----s~n~l~~l~~~~~~---l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp  286 (727)
T 4b8c_D          225 LWHALDL----SNLQIFNISANIFK---YDFLTRLYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTSLP  286 (727)
T ss_dssp             CCCEEEC----TTSCCSCCCGGGGG---CCSCSCCBCTTSCCSCCCG-GGGGGTTCCEEECTTSCCSSCC
T ss_pred             CCcEEEC----CCCCCCCCChhhcC---CCCCCEEEeeCCcCcccCh-hhhCCCCCCEEeCcCCcCCccC
Confidence            3444555    55555555554442   4444444554444444432 2444444444444444444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.18  E-value=1.5e-06  Score=62.82  Aligned_cols=63  Identities=24%  Similarity=0.473  Sum_probs=42.1

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..+|+..+.   +++|+.|++++|.++.++. .|..+++|+.|++++|.++.+|+
T Consensus        82 ~l~~L~L----~~n~l~~lp~~l~~---l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~  144 (328)
T 4fcg_A           82 GRVALEL----RSVPLPQFPDQAFR---LSHLQHMTIDAAGLMELPD-TMQQFAGLETLTLARNPLRALPA  144 (328)
T ss_dssp             TCCEEEE----ESSCCSSCCSCGGG---GTTCSEEEEESSCCCCCCS-CGGGGTTCSEEEEESCCCCCCCG
T ss_pred             ceeEEEc----cCCCchhcChhhhh---CCCCCEEECCCCCccchhH-HHhccCCCCEEECCCCccccCcH
Confidence            5667777    77777777766543   6677777777777775543 35666777777777777766653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.18  E-value=2.5e-06  Score=66.33  Aligned_cols=61  Identities=30%  Similarity=0.369  Sum_probs=48.9

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.|++    ++|.+..+|. .|.  ++++|+.|++++|.++.++  .|..+++|+.|+|++|.|+.++
T Consensus       464 ~L~~L~L----s~N~l~~lp~-~~~--~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~  524 (567)
T 1dce_A          464 LVTHLDL----SHNRLRALPP-ALA--ALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSA  524 (567)
T ss_dssp             TCCEEEC----CSSCCCCCCG-GGG--GCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSS
T ss_pred             cCcEeec----Ccccccccch-hhh--cCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCC
Confidence            6778888    8888888876 444  5788888888888888875  5788888888888888888773

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.13  E-value=1.1e-06  Score=63.04  Aligned_cols=62  Identities=23%  Similarity=0.303  Sum_probs=53.3

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.|++    ++|.+..+++..|.  .+++|+.|++++|.++.+.+  |..+++|+.|++++|.++.++
T Consensus        35 ~L~~L~L----~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~   96 (317)
T 3o53_A           35 NVKELDL----SGNPLSQISAADLA--PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL   96 (317)
T ss_dssp             GCSEEEC----TTSCCCCCCHHHHT--TCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE
T ss_pred             CCCEEEC----cCCccCcCCHHHhh--CCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc
Confidence            5788999    99999999888888  78999999999999987765  788889999999999887765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.13  E-value=1.6e-06  Score=65.96  Aligned_cols=63  Identities=22%  Similarity=0.288  Sum_probs=55.1

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..+++..|.  .+++|+.|++++|.++.+.+  |..+++|+.|++++|.++.+++
T Consensus        35 ~L~~L~L----s~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~   97 (487)
T 3oja_A           35 NVKELDL----SGNPLSQISAADLA--PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV   97 (487)
T ss_dssp             GCCEEEC----CSSCCCCCCGGGGT--TCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE
T ss_pred             CccEEEe----eCCcCCCCCHHHHh--CCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC
Confidence            5788999    99999999988888  78999999999999988765  7888999999999998887664

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.13  E-value=2.6e-06  Score=57.03  Aligned_cols=63  Identities=17%  Similarity=0.197  Sum_probs=32.6

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCC-Cccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR-IHTL  106 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~-l~~l  106 (110)
                      .++.|++    ++|.+.......|.  .+++|+.|++++|.++...+..|..+++|+.|++++|. ++.+
T Consensus        89 ~L~~L~l----~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~  152 (197)
T 4ezg_A           89 NLERLRI----MGKDVTSDKIPNLS--GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI  152 (197)
T ss_dssp             TCCEEEE----ECTTCBGGGSCCCT--TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC
T ss_pred             CCCEEEe----ECCccCcccChhhc--CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc
Confidence            4555555    55555543333344  45555555555555555444445555555555555554 4443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.11  E-value=3.8e-06  Score=67.50  Aligned_cols=65  Identities=32%  Similarity=0.436  Sum_probs=40.6

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..+++..|.  ++++|+.|++++|.++.+.+..|.++++|+.|++++|.++.+++
T Consensus       291 ~L~~L~L----~~n~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~  355 (844)
T 3j0a_A          291 DLKVLNL----AYNKINKIADEAFY--GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD  355 (844)
T ss_dssp             CCCEEEE----ESCCCCEECTTTTT--TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred             CCCEEEC----CCCcCCCCChHHhc--CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh
Confidence            5566666    66666666666665  56666666666666666666556666666666666666655543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.10  E-value=1.8e-06  Score=68.78  Aligned_cols=62  Identities=26%  Similarity=0.291  Sum_probs=28.7

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.|++    ++|.|..+|.. |.  .+++|+.|+|++|.|+.++. .|..+++|+.|+|++|.|+.+|
T Consensus       248 ~L~~L~L----s~N~l~~lp~~-~~--~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~lp  309 (727)
T 4b8c_D          248 FLTRLYL----NGNSLTELPAE-IK--NLSNLRVLDLSHNRLTSLPA-ELGSCFQLKYFYFFDNMVTTLP  309 (727)
T ss_dssp             SCSCCBC----TTSCCSCCCGG-GG--GGTTCCEEECTTSCCSSCCS-SGGGGTTCSEEECCSSCCCCCC
T ss_pred             CCCEEEe----eCCcCcccChh-hh--CCCCCCEEeCcCCcCCccCh-hhcCCCCCCEEECCCCCCCccC
Confidence            3444445    55555544432 22  34455555555555554422 2444445555555555544444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.09  E-value=3.6e-06  Score=60.25  Aligned_cols=64  Identities=20%  Similarity=0.140  Sum_probs=41.1

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccc-cCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAF-SGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f-~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.+++    ++|.+..+++..|.  .+++|+.|++++|.++.+.+..+ ..+++|+.|++++|.++.++
T Consensus       121 ~L~~L~l----~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  185 (317)
T 3o53_A          121 GKKNIYL----ANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK  185 (317)
T ss_dssp             SCEEEEC----CSSCCCSGGGBCTG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred             CCCEEEC----CCCCCCCccchhhh--ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence            4566666    66777766666665  56677777777777776655544 24566666666666666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.07  E-value=5.4e-06  Score=66.00  Aligned_cols=61  Identities=23%  Similarity=0.251  Sum_probs=32.0

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH  104 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~  104 (110)
                      .++.+++    ++|.+....+..+.  .++.|+.|++++|.+++..|..|..+++|+.|+|++|+++
T Consensus       633 ~L~~LdL----s~N~l~g~ip~~l~--~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~  693 (768)
T 3rgz_A          633 SMMFLDM----SYNMLSGYIPKEIG--SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD  693 (768)
T ss_dssp             CCCEEEC----CSSCCBSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             cccEEEC----cCCcccccCCHHHh--ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence            3445555    55555544334444  3555555555555555444444555555555555555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.04  E-value=5.2e-06  Score=59.72  Aligned_cols=63  Identities=27%  Similarity=0.259  Sum_probs=33.6

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCccccc-EEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLH-NLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~-~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.+.+    .+| +..+++.+|.  +..+|+ .+.+++ +++.|.+.+|.++++|+.+++++|.++.+++
T Consensus       251 ~L~~l~l----~~n-i~~I~~~aF~--~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          251 YLLKIKL----PHN-LKTIGQRVFS--NCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD  314 (329)
T ss_dssp             TCCEEEC----CTT-CCEECTTTTT--TCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred             CCCEEEC----Ccc-cceehHHHhh--CChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence            4444444    444 4555555555  445555 555555 5555555555555555555555555555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.03  E-value=4.4e-06  Score=60.07  Aligned_cols=63  Identities=21%  Similarity=0.284  Sum_probs=57.6

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCc-EEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILI-ELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~-~l~Ls~N~l~~l~~  108 (110)
                      .++.+++    ++|.+..+++.+|.  +..+|+.+++++| ++.|.+.+|.++.+|+ .+++++ .++.+++
T Consensus       227 ~L~~l~L----~~n~i~~I~~~aF~--~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~  290 (329)
T 3sb4_A          227 NLVSLDI----SKTNATTIPDFTFA--QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF  290 (329)
T ss_dssp             TCCEEEC----TTBCCCEECTTTTT--TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT
T ss_pred             CCeEEEC----CCCCcceecHhhhh--CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch
Confidence            6889999    99999999999999  8899999999998 9999999999999999 999998 7777654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.03  E-value=7.3e-06  Score=61.88  Aligned_cols=60  Identities=25%  Similarity=0.365  Sum_probs=45.2

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH  104 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~  104 (110)
                      .++.|++    ++|.+..+|...+.   +++|+.+++++|.++.+++..|..+++|+.+++++|.++
T Consensus       422 ~L~~L~L----s~N~l~~ip~~~~~---l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          422 RIKVLDL----HSNKIKSIPKQVVK---LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             TCCEEEC----CSSCCCCCCGGGGG---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCCEEEC----CCCcccccchhhhc---CCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence            4667777    77777777776663   677888888888888777766777778888888888764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.02  E-value=8.3e-06  Score=58.23  Aligned_cols=60  Identities=22%  Similarity=0.185  Sum_probs=30.2

Q ss_pred             eeeEEEEeeCCCCccCCCCC-cCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLP-ADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~-~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      .++.|++    ++|.+...+ ...+.  .+++|+.|++++|.++.++...+   ++|+.|++++|+++.+
T Consensus       229 ~L~~L~L----s~N~l~~~~~~~~~~--~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          229 QLQGLDL----SHNSLRDAAGAPSCD--WPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             CCSEEEC----TTSCCCSSCCCSCCC--CCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCSC
T ss_pred             CCCEEEC----CCCcCCcccchhhhh--hcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCCC
Confidence            4455555    555555543 23333  34555555555555555544322   4555555555555544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.02  E-value=5.7e-06  Score=65.85  Aligned_cols=62  Identities=29%  Similarity=0.349  Sum_probs=56.3

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT  105 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~  105 (110)
                      .++.|++    ++|.+....+..|.  .++.|+.|++++|++++..|..|..+++|+.+++++|+++.
T Consensus       657 ~L~~L~L----s~N~l~g~ip~~l~--~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          657 YLFILNL----GHNDISGSIPDEVG--DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             TCCEEEC----CSSCCCSCCCGGGG--GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred             cCCEEeC----cCCccCCCCChHHh--CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence            7889999    99999976666777  68999999999999999888889999999999999999874

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.02  E-value=2e-06  Score=61.60  Aligned_cols=39  Identities=23%  Similarity=0.297  Sum_probs=16.9

Q ss_pred             cccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCc
Q psy17697         66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH  104 (110)
Q Consensus        66 ~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~  104 (110)
                      +++|+.|++++|.++...+..|..+++|+.|++++|.++
T Consensus       124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  162 (313)
T 1ogq_A          124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS  162 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc
Confidence            344444444444444333333444444444444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.01  E-value=4.6e-06  Score=63.41  Aligned_cols=64  Identities=20%  Similarity=0.140  Sum_probs=39.1

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCccccc-CCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFS-GLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~-~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.|++    ++|.+..+++..|.  .+++|+.|++++|.++.+.+..|. .+++|+.|+|++|.++.++
T Consensus       121 ~L~~L~L----~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~  185 (487)
T 3oja_A          121 GKKNIYL----ANNKITMLRDLDEG--CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK  185 (487)
T ss_dssp             SCEEEEC----CSSCCCSGGGBCGG--GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred             CCCEEEC----CCCCCCCCCchhhc--CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence            3455666    66666666665555  466677777777776665555443 4566666666666665543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.99  E-value=5.2e-06  Score=59.28  Aligned_cols=37  Identities=19%  Similarity=0.192  Sum_probs=20.5

Q ss_pred             ccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCC
Q psy17697         67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRI  103 (110)
Q Consensus        67 ~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l  103 (110)
                      ++|+.|++++|.++.+++..|..+++|+.|++++|.+
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  185 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE  185 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence            4555555555555555555555555555555555553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.99  E-value=1.1e-05  Score=63.10  Aligned_cols=65  Identities=18%  Similarity=0.291  Sum_probs=42.2

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcc-------cccEEeccCCCCcccCcccc-cCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLV-------NLHNLLLKDCNITDIDPDAF-SGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~-------~L~~l~l~~n~l~~i~~~~f-~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..+|...|.  +..       +|+.|++++|.++.++...+ ..+++|+.|++++|.++.+|.
T Consensus       458 ~L~~L~L----s~N~l~~i~~~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~  530 (636)
T 4eco_A          458 PLSSINL----MGNMLTEIPKNSLK--DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT  530 (636)
T ss_dssp             CCSEEEC----CSSCCSBCCSSSSE--ETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCC
T ss_pred             CCCEEEC----CCCCCCCcCHHHhc--cccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcCh
Confidence            4666677    77777777666665  332       67777777777776655432 366777777777777766653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.97  E-value=5.8e-06  Score=64.66  Aligned_cols=65  Identities=22%  Similarity=0.362  Sum_probs=49.6

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCc-------CCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLG-------ILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~-------~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..+|...|.  .+++|+.|++++|.++.++...|....       +|+.|++++|.++.+|.
T Consensus       434 ~L~~L~L----s~N~l~~lp~~~~~--~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~  505 (636)
T 4eco_A          434 NVSSINL----SNNQISKFPKELFS--TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD  505 (636)
T ss_dssp             CEEEEEC----CSSCCCSCCTHHHH--TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCG
T ss_pred             CCCEEEC----cCCccCcCCHHHHc--cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccCh
Confidence            5677788    88888888877776  577888888888888877776665443       78888888888887764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.97  E-value=1.1e-05  Score=57.41  Aligned_cols=59  Identities=37%  Similarity=0.517  Sum_probs=30.5

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      .++.|++    ++|.+..+  ..+.  .+++|+.|++++|.++.+.+  +..+++|+.|++++|.++.+
T Consensus       135 ~L~~L~l----~~n~l~~~--~~l~--~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l  193 (291)
T 1h6t_A          135 QLESLYL----GNNKITDI--TVLS--RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL  193 (291)
T ss_dssp             TCCEEEC----CSSCCCCC--GGGG--GCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             CCCEEEc----cCCcCCcc--hhhc--cCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC
Confidence            3444555    55555544  2233  34555555555555555543  45555555566665555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.96  E-value=6.9e-06  Score=58.89  Aligned_cols=63  Identities=27%  Similarity=0.481  Sum_probs=44.7

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.+++    ++|.+..++  .+.  .+++|+.+++++|.++.+.+..|..+++|+.+++++|.++.+++
T Consensus       266 ~L~~L~l----~~n~l~~~~--~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          266 KLKMLNV----GSNQISDIS--VLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             TCCEEEC----CSSCCCCCG--GGG--GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             CcCEEEc----cCCccCCCh--hhc--CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            5666777    777777663  344  56777777777777777777777777788888888887776543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.94  E-value=1.1e-05  Score=57.70  Aligned_cols=7  Identities=29%  Similarity=0.382  Sum_probs=2.6

Q ss_pred             CCccCCC
Q psy17697         49 KSNNIPH   55 (110)
Q Consensus        49 ~~n~l~~   55 (110)
                      ++|.+..
T Consensus       115 ~~n~l~~  121 (308)
T 1h6u_A          115 TSTQITD  121 (308)
T ss_dssp             TTSCCCC
T ss_pred             CCCCCCC
Confidence            3333333

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.94  E-value=1.3e-05  Score=56.17  Aligned_cols=39  Identities=23%  Similarity=0.380  Sum_probs=21.6

Q ss_pred             ccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        67 ~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      ++|+.|++++|+++.++  .+..+++|+.|++++|+++.++
T Consensus       106 ~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~  144 (263)
T 1xeu_A          106 ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV  144 (263)
T ss_dssp             SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG
T ss_pred             CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh
Confidence            34444445555444442  2556666666777776666553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=97.94  E-value=1.3e-05  Score=57.26  Aligned_cols=39  Identities=36%  Similarity=0.521  Sum_probs=19.1

Q ss_pred             cccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697         66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        66 ~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      +++|+.|++++|.++.+++  +..+++|+.|++++|.++.+
T Consensus       106 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~  144 (308)
T 1h6u_A          106 LQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNI  144 (308)
T ss_dssp             CTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcC
Confidence            4445555555555444422  44455555555555555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.93  E-value=8.9e-06  Score=57.94  Aligned_cols=61  Identities=16%  Similarity=0.205  Sum_probs=32.5

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcc---cCc-ccccCCcCCcEEeCCCCCCc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITD---IDP-DAFSGLGILIELDLTKNRIH  104 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~---i~~-~~f~~l~~L~~l~Ls~N~l~  104 (110)
                      .++.|++    ++|.+..++...|.  ++++|+.|++++|++..   +.. ..+..+++|+.|++++|+++
T Consensus       146 ~L~~L~L----s~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  210 (310)
T 4glp_A          146 GLKVLSI----AQAHSPAFSCEQVR--AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME  210 (310)
T ss_dssp             CCCEEEE----ECCSSCCCCTTSCC--CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred             CCCEEEe----eCCCcchhhHHHhc--cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence            4556666    66666666666665  55666666666665443   111 11233444555555555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.90  E-value=1.6e-05  Score=53.17  Aligned_cols=60  Identities=22%  Similarity=0.285  Sum_probs=43.9

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT  105 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~  105 (110)
                      .++.|++    ++|.+..++  .+.  .+++|+.+++++|.++...+..|..+++|+.|++++|.++.
T Consensus        67 ~L~~L~l----~~n~~~~~~--~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~  126 (197)
T 4ezg_A           67 NIKDLTI----NNIHATNYN--PIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD  126 (197)
T ss_dssp             TCSEEEE----ESCCCSCCG--GGT--TCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBG
T ss_pred             CCCEEEc----cCCCCCcch--hhh--cCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCc
Confidence            5667777    777666554  344  56778888888888877656667788888888888888775

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.90  E-value=1.8e-05  Score=56.26  Aligned_cols=58  Identities=26%  Similarity=0.378  Sum_probs=26.7

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT  105 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~  105 (110)
                      .++.|++    ++|.+..+++  +.  .+++|+.|++++|.++.++.  +..+++|+.|++++|.++.
T Consensus        69 ~L~~L~L----~~n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~i~~  126 (291)
T 1h6t_A           69 NVTKLFL----NGNKLTDIKP--LA--NLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISD  126 (291)
T ss_dssp             TCCEEEC----CSSCCCCCGG--GT--TCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCCC
T ss_pred             CCCEEEc----cCCccCCCcc--cc--cCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCCcCCC
Confidence            3445555    5555555444  33  34445555555554444321  3444444444444444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=97.87  E-value=2.9e-05  Score=56.02  Aligned_cols=50  Identities=24%  Similarity=0.327  Sum_probs=21.3

Q ss_pred             CCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCC
Q psy17697         49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN  101 (110)
Q Consensus        49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N  101 (110)
                      ++|.+..+|+. |.  .+++|+.|++++|.+....+..|..+++|+.|++++|
T Consensus       214 ~~N~l~~l~~~-l~--~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n  263 (328)
T 4fcg_A          214 RNSPLSALGPA-IH--HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC  263 (328)
T ss_dssp             ESSCCCCCCGG-GG--GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTC
T ss_pred             cCCCCCcCchh-hc--cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCC
Confidence            44444444432 22  2344444444444444333333444444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.86  E-value=1.7e-05  Score=56.41  Aligned_cols=63  Identities=22%  Similarity=0.205  Sum_probs=40.5

Q ss_pred             eeeEEEEeeCCCCccCCCC-CcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHL-PADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~-~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.|++    ++|.+..+ |+..+...++++|+.|++++|+++.++...+   ++|+.|++++|+++.+|
T Consensus       225 ~L~~L~L----s~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~~  288 (310)
T 4glp_A          225 QPHSLDL----SHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNRAP  288 (310)
T ss_dssp             CCSSEEC----TTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCSCC
T ss_pred             CCCEEEC----CCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCCCc
Confidence            5667777    77877776 3333220012577778888887777755432   67777777777777654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.85  E-value=2.2e-05  Score=56.20  Aligned_cols=60  Identities=33%  Similarity=0.471  Sum_probs=42.0

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.+++    ++|.+..++.  |.  .+++|+.+++++|.++.++  .|..+++|+.|++++|.++.++
T Consensus        67 ~L~~L~l----~~n~i~~~~~--~~--~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~~n~i~~~~  126 (347)
T 4fmz_A           67 NLEYLNL----NGNQITDISP--LS--NLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDIS  126 (347)
T ss_dssp             TCCEEEC----CSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECTTSCCCCCG
T ss_pred             CccEEEc----cCCccccchh--hh--cCCcCCEEEccCCcccCch--HHcCCCcCCEEECcCCcccCch
Confidence            5677777    7777777665  55  5677777777777777662  3667777777777777776654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.82  E-value=3.7e-05  Score=62.77  Aligned_cols=65  Identities=17%  Similarity=0.246  Sum_probs=45.4

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcc-------cccEEeccCCCCcccCcccc-cCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLV-------NLHNLLLKDCNITDIDPDAF-SGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~-------~L~~l~l~~n~l~~i~~~~f-~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|++    ++|.+..+|...|.  +..       +|+.|++++|.++.++...+ ..+++|+.|+|++|.++.+|.
T Consensus       698 ~L~~L~L----s~N~L~~ip~~~~~--~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~  770 (876)
T 4ecn_A          698 PISTIIL----SNNLMTSIPENSLK--PKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT  770 (876)
T ss_dssp             CCSEEEC----CSCCCSCCCTTSSS--CTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCC
T ss_pred             CCCEEEC----CCCcCCccChHHhc--cccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccch
Confidence            5667777    77777777777765  332       77778888887777655532 267778888888887777653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.79  E-value=2.9e-05  Score=58.20  Aligned_cols=60  Identities=23%  Similarity=0.478  Sum_probs=42.1

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.|++    ++|.+..+++  |.  .+++|+.+++++|.++.+++  |..+++|+.|++++|.++.++
T Consensus        69 ~L~~L~L----s~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~  128 (466)
T 1o6v_A           69 NLTQINF----SNNQLTDITP--LK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID  128 (466)
T ss_dssp             TCCEEEC----CSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred             CCCEEEC----CCCccCCchh--hh--ccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCCh
Confidence            5667777    7777777765  55  56777777777777777655  667777777777777766654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.74  E-value=4.6e-05  Score=62.21  Aligned_cols=63  Identities=16%  Similarity=0.249  Sum_probs=33.7

Q ss_pred             eeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccC------CCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         39 ARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKD------CNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        39 l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~------n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      ++.|++    ++|.+..+|...+   .+++|+.|++++      |.+....|..|..+++|+.|+|++|.+..+|.
T Consensus       755 L~~L~L----s~N~L~~lp~~l~---~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~  823 (876)
T 4ecn_A          755 LSNMDV----SYNCFSSFPTQPL---NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE  823 (876)
T ss_dssp             CCEEEC----CSSCCSSCCCGGG---GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCS
T ss_pred             cCEEEe----CCCCCCccchhhh---cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCH
Confidence            445555    5555555444333   245555555543      44444444455566666666666666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.73  E-value=4e-05  Score=60.09  Aligned_cols=39  Identities=46%  Similarity=0.640  Sum_probs=18.2

Q ss_pred             cccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697         66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        66 ~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      +++|+.|++++|.++.+.+  +..+++|+.|+|++|.|+.+
T Consensus       152 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l  190 (605)
T 1m9s_A          152 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL  190 (605)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence            4444444444444444433  44444455555555444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.67  E-value=7.2e-05  Score=58.39  Aligned_cols=55  Identities=24%  Similarity=0.344  Sum_probs=28.0

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      .++.|++    ++|.+..+| .     .+++|+.|++++|.++.++.  |..  +|+.|++++|.|+.+
T Consensus        81 ~L~~L~L----s~N~l~~ip-~-----~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~~l  135 (571)
T 3cvr_A           81 QITVLEI----TQNALISLP-E-----LPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLTML  135 (571)
T ss_dssp             TCSEEEC----CSSCCSCCC-C-----CCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCSCC
T ss_pred             CCCEEEC----cCCCCcccc-c-----ccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCCCC
Confidence            4566666    666666665 1     13455555555555555443  222  444444444444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.66  E-value=7.2e-05  Score=58.38  Aligned_cols=14  Identities=29%  Similarity=0.427  Sum_probs=5.7

Q ss_pred             CCcEEeCCCCCCcc
Q psy17697         92 ILIELDLTKNRIHT  105 (110)
Q Consensus        92 ~L~~l~Ls~N~l~~  105 (110)
                      +|+.|++++|.|+.
T Consensus       181 ~L~~L~Ls~N~L~~  194 (571)
T 3cvr_A          181 SLEALDVSTNLLES  194 (571)
T ss_dssp             TCCEEECCSSCCSS
T ss_pred             CCCEEECcCCCCCc
Confidence            34444444444433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.65  E-value=1.3e-06  Score=58.53  Aligned_cols=37  Identities=22%  Similarity=0.261  Sum_probs=17.2

Q ss_pred             ccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697         67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT  105 (110)
Q Consensus        67 ~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~  105 (110)
                      ++|+.|++++|.++.++  .+..+++|+.|++++|.++.
T Consensus        93 ~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~  129 (198)
T 1ds9_A           93 DTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             HHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCC
T ss_pred             CcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCc
Confidence            44444444444444442  23444455555555555443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.64  E-value=8.1e-05  Score=56.15  Aligned_cols=57  Identities=28%  Similarity=0.320  Sum_probs=33.7

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      .++.+++    ++|.++.++   +.  .+++|+.|++++|.++.++   +..+++|+.|++++|.++.+
T Consensus        65 ~L~~L~L----s~n~l~~~~---~~--~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l  121 (457)
T 3bz5_A           65 GLTKLIC----TSNNITTLD---LS--QNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKL  121 (457)
T ss_dssp             TCSEEEC----CSSCCSCCC---CT--TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCC
T ss_pred             CCCEEEc----cCCcCCeEc---cc--cCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCee
Confidence            4555566    666665553   33  4556666666666666652   55566666666666666554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.64  E-value=6.1e-05  Score=59.05  Aligned_cols=59  Identities=31%  Similarity=0.397  Sum_probs=29.4

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      .++.|++    ++|.+..++  .+.  .+++|+.|++++|.++.++  .+..+++|+.|+|++|.++.+
T Consensus        88 ~L~~L~L----s~N~l~~l~--~l~--~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l  146 (605)
T 1m9s_A           88 NLGWLFL----DENKIKDLS--SLK--DLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI  146 (605)
T ss_dssp             TCCEEEC----CSSCCCCCT--TST--TCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC
T ss_pred             CCCEEEC----cCCCCCCCh--hhc--cCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc
Confidence            4444555    555554443  233  3455555555555555541  244555555555555555443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.63  E-value=9.1e-05  Score=55.88  Aligned_cols=57  Identities=23%  Similarity=0.286  Sum_probs=34.0

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      .++.|++    ++|.+..++   |.  .+++|+.+++++|.++.++   +..+++|+.|++++|.++.+
T Consensus        86 ~L~~L~L----s~N~l~~~~---~~--~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l  142 (457)
T 3bz5_A           86 NLTYLAC----DSNKLTNLD---VT--PLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEI  142 (457)
T ss_dssp             TCSEEEC----CSSCCSCCC---CT--TCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCC
T ss_pred             CCCEEEC----cCCCCceee---cC--CCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCcccee
Confidence            5556666    666666653   44  4566666666666666652   55566666666666666554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.56  E-value=7.8e-05  Score=53.19  Aligned_cols=61  Identities=26%  Similarity=0.250  Sum_probs=49.4

Q ss_pred             eeeEEEEeeCCCCccCCCCCc--CccCccCcccccEEeccCCCCcccCc-ccccCCcCCcEEeCCCCCCcc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPA--DAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHT  105 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~--~~f~~~~~~~L~~l~l~~n~l~~i~~-~~f~~l~~L~~l~Ls~N~l~~  105 (110)
                      .++.|++    ++|.|..++.  ..+.  .+++|+.|+|++|.++.+.. ..+..+ +|+.|+|++|.+..
T Consensus       171 ~L~~L~L----s~N~l~~l~~l~~~~~--~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          171 ELLSLNL----SNNRLYRLDDMSSIVQ--KAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD  234 (267)
T ss_dssp             TCCEEEC----TTSCCCCCGGGTTHHH--HSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred             CCCEEEC----CCCCCCCCccchhHHh--hCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence            6889999    9999998775  3444  57899999999999998833 344444 99999999999874

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.55  E-value=0.00013  Score=57.40  Aligned_cols=55  Identities=25%  Similarity=0.288  Sum_probs=30.5

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      .++.|++    ++|.++.+|.   .   +++|+.|++++|.++.++.    .+++|+.|++++|.++.+
T Consensus        62 ~L~~L~L----~~N~l~~lp~---~---l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l  116 (622)
T 3g06_A           62 HITTLVI----PDNNLTSLPA---L---PPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHL  116 (622)
T ss_dssp             TCSEEEE----CSCCCSCCCC---C---CTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCC
T ss_pred             CCcEEEe----cCCCCCCCCC---c---CCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCC
Confidence            5666666    6666666665   1   3456666666666665544    234444555555544444

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.54  E-value=0.00011  Score=57.74  Aligned_cols=38  Identities=16%  Similarity=0.176  Sum_probs=19.7

Q ss_pred             ccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697         67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT  105 (110)
Q Consensus        67 ~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~  105 (110)
                      ++|+.|++++|.++.+++. |..+++|+.|++++|.++.
T Consensus       261 ~~L~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          261 SGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             TTCCEEECCSSCCCSCCGG-GGGSCTTCEEECCSCCCCH
T ss_pred             ccCcEEeCCCCCCCcCCHH-HhhccccCEEEecCCCCCC
Confidence            3455555555555554332 4555555555555555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.52  E-value=0.00012  Score=54.77  Aligned_cols=14  Identities=43%  Similarity=0.280  Sum_probs=5.5

Q ss_pred             CcCCcEEeCCCCCC
Q psy17697         90 LGILIELDLTKNRI  103 (110)
Q Consensus        90 l~~L~~l~Ls~N~l  103 (110)
                      +++|+.|++++|.+
T Consensus       308 l~~L~~L~L~~n~l  321 (466)
T 1o6v_A          308 LKNLTYLTLYFNNI  321 (466)
T ss_dssp             CTTCSEEECCSSCC
T ss_pred             CCCCCEEECcCCcC
Confidence            33333444444333

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.44  E-value=4e-05  Score=55.69  Aligned_cols=62  Identities=19%  Similarity=0.232  Sum_probs=29.6

Q ss_pred             eeEEEEeeCCCCccCCCCCcCccCccCc-----ccccEEeccCCCCcccCccc----ccCC-cCCcEEeCCCCCCccc
Q psy17697         39 ARVLKLKIGEKSNNIPHLPADAFRSTGL-----VNLHNLLLKDCNITDIDPDA----FSGL-GILIELDLTKNRIHTL  106 (110)
Q Consensus        39 l~~l~l~~~~~~n~l~~~~~~~f~~~~~-----~~L~~l~l~~n~l~~i~~~~----f~~l-~~L~~l~Ls~N~l~~l  106 (110)
                      ++.|++    ++|.+.......|.  ..     ++|+.|++++|.++...+..    +... ++|+.|++++|.++..
T Consensus        53 L~~L~L----s~N~l~~~~~~~l~--~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  124 (362)
T 3goz_A           53 VTSLNL----SGNSLGFKNSDELV--QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK  124 (362)
T ss_dssp             CCEEEC----CSSCGGGSCHHHHH--HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred             eeEEEC----cCCCCCHHHHHHHH--HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence            445555    55555544443333  22     45555555555555544432    2222 4555555555555443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.43  E-value=0.0003  Score=52.95  Aligned_cols=29  Identities=14%  Similarity=0.292  Sum_probs=12.0

Q ss_pred             CCccCCCCCcCccCccCcccccEEeccCCCCcc
Q psy17697         49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITD   81 (110)
Q Consensus        49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~   81 (110)
                      ++|.+..+|  .|.  ++++|+.+++++|+++.
T Consensus       139 ~~n~l~~lp--~~~--~l~~L~~L~l~~N~l~~  167 (454)
T 1jl5_A          139 SNNQLEKLP--ELQ--NSSFLKIIDVDNNSLKK  167 (454)
T ss_dssp             CSSCCSSCC--CCT--TCTTCCEEECCSSCCSC
T ss_pred             cCCCCCCCc--ccC--CCCCCCEEECCCCcCcc
Confidence            444444444  133  33444444444444333

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.34  E-value=3.4e-06  Score=56.56  Aligned_cols=39  Identities=33%  Similarity=0.421  Sum_probs=19.6

Q ss_pred             cccccEEeccCCCCcccCc-ccccCCcCCcEEeCCCCCCc
Q psy17697         66 LVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIH  104 (110)
Q Consensus        66 ~~~L~~l~l~~n~l~~i~~-~~f~~l~~L~~l~Ls~N~l~  104 (110)
                      +++|+.+++++|.++.++. ..+..+++|+.+++++|.++
T Consensus       114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            4455555555555554433 33445555555555555443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.31  E-value=0.00047  Score=51.89  Aligned_cols=58  Identities=16%  Similarity=0.189  Sum_probs=31.2

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.+++    ++|.+..+|.  |.  .+++|+.+++++|+++.++..    +++|+.+++++|.++.+|
T Consensus       216 ~L~~L~l----~~n~l~~lp~--~~--~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~N~l~~l~  273 (454)
T 1jl5_A          216 SLESIVA----GNNILEELPE--LQ--NLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDLP  273 (454)
T ss_dssp             TCCEEEC----CSSCCSSCCC--CT--TCTTCCEEECCSSCCSSCCSC----CTTCCEEECCSSCCSCCC
T ss_pred             cccEEEC----cCCcCCcccc--cC--CCCCCCEEECCCCcCCccccc----ccccCEEECCCCcccccC
Confidence            3555666    6666665553  44  456666666666666655431    244455555555444433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.11  E-value=9.3e-05  Score=53.75  Aligned_cols=63  Identities=19%  Similarity=0.230  Sum_probs=33.9

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCcc--Cc-ccccEEeccCCCCcccCcccc----cC-CcCCcEEeCCCCCCc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRST--GL-VNLHNLLLKDCNITDIDPDAF----SG-LGILIELDLTKNRIH  104 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~--~~-~~L~~l~l~~n~l~~i~~~~f----~~-l~~L~~l~Ls~N~l~  104 (110)
                      .++.|++    ++|.+.......+...  .. ++|+.|++++|.++......+    .. ..+|+.|++++|.++
T Consensus        81 ~L~~L~L----s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A           81 NVTSLNL----SGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             TCCEEEC----CSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             CccEEEC----cCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence            3556666    6666665554422200  12 556666666666666555432    22 246666666666665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.96  E-value=0.0013  Score=49.03  Aligned_cols=52  Identities=19%  Similarity=0.293  Sum_probs=30.0

Q ss_pred             CCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         53 IPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        53 l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      ++.+...+|.  + ..|+.+.+.. .++.|...+|.++.+|+.+++++|.++.++.
T Consensus       146 i~~I~~~aF~--~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~  197 (401)
T 4fdw_A          146 LKSIGDMAFF--N-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPA  197 (401)
T ss_dssp             CCEECTTTTT--T-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECT
T ss_pred             ccEECHHhcC--C-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEech
Confidence            5555555555  2 3455555553 5566666666666666666666665555543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.91  E-value=0.00088  Score=49.87  Aligned_cols=52  Identities=19%  Similarity=0.237  Sum_probs=30.4

Q ss_pred             cCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         52 NIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        52 ~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.++..+|.  +..+|+.+.+.. .++.|...+|.++ +|+.+++.+|.+..++
T Consensus       310 ~i~~I~~~aF~--~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~  361 (401)
T 4fdw_A          310 SIRILGQGLLG--GNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQVF  361 (401)
T ss_dssp             TCCEECTTTTT--TCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred             ceEEEhhhhhc--CCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence            35555555665  455666666643 3566666666666 6666666666655544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.87  E-value=0.00054  Score=48.79  Aligned_cols=42  Identities=19%  Similarity=0.223  Sum_probs=36.5

Q ss_pred             CcccccEEeccCCCCcccCc--ccccCCcCCcEEeCCCCCCccc
Q psy17697         65 GLVNLHNLLLKDCNITDIDP--DAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        65 ~~~~L~~l~l~~n~l~~i~~--~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      .+++|+.|+|++|.++.+.+  ..+..+++|+.|+|++|.|+.+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~  211 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE  211 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence            36789999999999999764  5567899999999999999876

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.83  E-value=0.00078  Score=47.78  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=17.1

Q ss_pred             cccccEEeccCCCCcccCcccccCCcCCcEEeCCCC
Q psy17697         66 LVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN  101 (110)
Q Consensus        66 ~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N  101 (110)
                      +++|+.|++++|.++...+..+..+++|+.|++++|
T Consensus       117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B          117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence            444444455444444333334444555555555555

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.78  E-value=0.00032  Score=49.84  Aligned_cols=60  Identities=15%  Similarity=0.120  Sum_probs=37.9

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCccc-CcccccCCcCCcEEeCCCCCCc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDI-DPDAFSGLGILIELDLTKNRIH  104 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i-~~~~f~~l~~L~~l~Ls~N~l~  104 (110)
                      .++.+++    ++|.+...+...+.   +++|+.+++++|.++.. .+..+..+++|+.|++++|.++
T Consensus        71 ~l~~L~l----~~n~l~~~~~~~~~---~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~  131 (336)
T 2ast_B           71 GVIAFRC----PRSFMDQPLAEHFS---PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS  131 (336)
T ss_dssp             TCSEEEC----TTCEECSCCCSCCC---CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC
T ss_pred             cceEEEc----CCccccccchhhcc---CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC
Confidence            4566666    77776666665543   56677777777766543 3344566677777777777654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.73  E-value=0.0017  Score=47.09  Aligned_cols=56  Identities=20%  Similarity=0.258  Sum_probs=31.5

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  100 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~  100 (110)
                      .++.+.+    ..+.++.+++.+|.  +..+|+.+.+.. .++.|...+|.++.+|+.+.++.
T Consensus       287 ~L~~i~l----~~~~i~~I~~~aF~--~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          287 NLTKVVM----DNSAIETLEPRVFM--DCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TCCEEEE----CCTTCCEECTTTTT--TCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCCT
T ss_pred             ccccccc----cccccceehhhhhc--CCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEECC
Confidence            4555555    55555556666665  455566665543 25556555666666665555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.46  E-value=0.0023  Score=40.51  Aligned_cols=37  Identities=24%  Similarity=0.267  Sum_probs=34.4

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNIT   80 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~   80 (110)
                      .++.|++    ++|.|+.++.+.|.  ++++|+.++|.+|.+.
T Consensus        32 ~l~~L~L----s~N~l~~l~~~~f~--~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVL----TGNNLTALPPGLLD--ALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEEC----TTSCCSSCCTTTGG--GCTTCCEEECCSSCCB
T ss_pred             CCCEEEC----CCCcCCccChhhhh--hccccCEEEecCCCee
Confidence            6889999    99999999999999  7899999999999864

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=96.38  E-value=0.001  Score=48.39  Aligned_cols=39  Identities=26%  Similarity=0.152  Sum_probs=17.0

Q ss_pred             cccccEEeccCCCCc----ccCcccccCCcCCcEEeCCCCCCc
Q psy17697         66 LVNLHNLLLKDCNIT----DIDPDAFSGLGILIELDLTKNRIH  104 (110)
Q Consensus        66 ~~~L~~l~l~~n~l~----~i~~~~f~~l~~L~~l~Ls~N~l~  104 (110)
                      .++|+.|++++|.++    ..-+..+..+++|+.|+|++|.++
T Consensus       215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~  257 (386)
T 2ca6_A          215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  257 (386)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence            444555555555542    111223344444444555544443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.35  E-value=0.0082  Score=43.46  Aligned_cols=62  Identities=19%  Similarity=0.363  Sum_probs=48.5

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.+.+    . +.+..++..+|.  +..+|+.+.+.++.++.|...+|.++.+|+.+.++.+ ++++.
T Consensus       264 ~l~~i~l----~-~~i~~i~~~aF~--~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~  325 (379)
T 4h09_A          264 ALKTLNF----Y-AKVKTVPYLLCS--GCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQ  325 (379)
T ss_dssp             TCCEEEE----C-CCCSEECTTTTT--TCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred             hhccccc----c-ccceeccccccc--cccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEH
Confidence            4555555    3 346778888888  7788999999988999999999999999999999755 55554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.33  E-value=0.0054  Score=44.90  Aligned_cols=61  Identities=16%  Similarity=0.298  Sum_probs=36.9

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.+.+    .. .++.+.+.+|.  +..+|+.+.+.. .++.|...+|.++.+|+.+.++.| ++++.
T Consensus       298 ~L~~i~l----~~-~i~~I~~~aF~--~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~  358 (394)
T 4fs7_A          298 SLTEVKL----LD-SVKFIGEEAFE--SCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIG  358 (394)
T ss_dssp             TCCEEEE----CT-TCCEECTTTTT--TCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred             ccccccc----cc-ccceechhhhc--CCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence            4445555    33 35666666666  556677766653 366666666777777777666655 44443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=96.28  E-value=0.00072  Score=49.21  Aligned_cols=40  Identities=35%  Similarity=0.321  Sum_probs=19.2

Q ss_pred             cccccEEeccCCCCcccC----cccc--cCCcCCcEEeCCCCCCcc
Q psy17697         66 LVNLHNLLLKDCNITDID----PDAF--SGLGILIELDLTKNRIHT  105 (110)
Q Consensus        66 ~~~L~~l~l~~n~l~~i~----~~~f--~~l~~L~~l~Ls~N~l~~  105 (110)
                      .++|+.|++++|.++...    +..+  ..+++|+.|++++|.++.
T Consensus       243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            455555555555554431    1222  124555555555555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.89  E-value=0.011  Score=43.22  Aligned_cols=56  Identities=21%  Similarity=0.402  Sum_probs=32.7

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN  101 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N  101 (110)
                      .++.+.+    .. .++.|...+|.  +..+|+.+.+.. .++.|...+|.++.+|+.+++++|
T Consensus       312 ~L~~i~l----p~-~v~~I~~~aF~--~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          312 SLKSIDI----PE-GITQILDDAFA--GCEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TCCEEEC----CT-TCCEECTTTTT--TCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CcCEEEe----CC-cccEehHhHhh--CCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCc
Confidence            4455555    33 35556666666  556666666653 356666666666666666666654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.73  E-value=0.0055  Score=44.83  Aligned_cols=56  Identities=23%  Similarity=0.351  Sum_probs=49.0

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKN  101 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N  101 (110)
                      .++.+.+    . +.++.+...+|.  +..+|+.+.+..+ ++.|...+|.++.+|+.++++.+
T Consensus       321 ~L~~i~l----p-~~v~~I~~~aF~--~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          321 SLVSIDL----P-YLVEEIGKRSFR--GCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TCCEECC----C-TTCCEECTTTTT--TCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             CCCEEEe----C-CcccEEhHHhcc--CCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            6778878    5 448999999999  7899999999876 89999999999999999999765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.64  E-value=0.014  Score=42.60  Aligned_cols=53  Identities=26%  Similarity=0.504  Sum_probs=41.3

Q ss_pred             ccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         51 NNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        51 n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      +.+..++..+|.  +..+|+.+.+.. .++.|...+|.++.+|+.+.++.+ ++++.
T Consensus       297 ~~i~~I~~~aF~--~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~  349 (394)
T 4gt6_A          297 SRITELPESVFA--GCISLKSIDIPE-GITQILDDAFAGCEQLERIAIPSS-VTKIP  349 (394)
T ss_dssp             TTCCEECTTTTT--TCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEECTT-CCBCC
T ss_pred             CcccccCceeec--CCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEECcc-cCEEh
Confidence            567778888888  678888888875 478888888998889988888754 55543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=95.64  E-value=0.0017  Score=47.82  Aligned_cols=61  Identities=20%  Similarity=0.300  Sum_probs=35.8

Q ss_pred             eeeEEEEeeCCCCccCCCCC----cCccCccCcccccEEeccCCCCcccCcccc-cCCc----CCcEEeCCCCCCc
Q psy17697         38 AARVLKLKIGEKSNNIPHLP----ADAFRSTGLVNLHNLLLKDCNITDIDPDAF-SGLG----ILIELDLTKNRIH  104 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~----~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f-~~l~----~L~~l~Ls~N~l~  104 (110)
                      .++.+++    ++|.+....    ...+.  ..++|+.+++++|.++......+ ..+.    +|+.|++++|.++
T Consensus        29 ~L~~L~L----~~~~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~   98 (461)
T 1z7x_W           29 QCQVVRL----DDCGLTEARCKDISSALR--VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT   98 (461)
T ss_dssp             TCSEEEE----ESSCCCHHHHHHHHHHHH--TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCB
T ss_pred             CccEEEc----cCCCCCHHHHHHHHHHHH--hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCC
Confidence            5666777    777665321    12233  35677777777777766433222 2333    5777777777766

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=95.59  E-value=0.0019  Score=47.56  Aligned_cols=13  Identities=31%  Similarity=0.138  Sum_probs=5.4

Q ss_pred             cCCcEEeCCCCCC
Q psy17697         91 GILIELDLTKNRI  103 (110)
Q Consensus        91 ~~L~~l~Ls~N~l  103 (110)
                      ++|+.|+|++|.|
T Consensus       239 ~~L~~L~Ls~N~i  251 (372)
T 3un9_A          239 PSLELLHLYFNEL  251 (372)
T ss_dssp             SSCCEEECTTSSC
T ss_pred             CCCCEEeccCCCC
Confidence            3344444444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=95.59  E-value=0.0026  Score=46.88  Aligned_cols=35  Identities=29%  Similarity=0.508  Sum_probs=15.2

Q ss_pred             ccEEeccCCCCcccC----cccccCCcCCcEEeCCCCCC
Q psy17697         69 LHNLLLKDCNITDID----PDAFSGLGILIELDLTKNRI  103 (110)
Q Consensus        69 L~~l~l~~n~l~~i~----~~~f~~l~~L~~l~Ls~N~l  103 (110)
                      |+.|++++|.++...    +..|..+++|+.|++++|.+
T Consensus        87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  125 (461)
T 1z7x_W           87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  125 (461)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC
Confidence            444444444444211    33344444444444444444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=95.06  E-value=0.0057  Score=44.99  Aligned_cols=15  Identities=20%  Similarity=0.315  Sum_probs=7.0

Q ss_pred             ccccEEeccCCCCcc
Q psy17697         67 VNLHNLLLKDCNITD   81 (110)
Q Consensus        67 ~~L~~l~l~~n~l~~   81 (110)
                      +.|+.|++++|.++.
T Consensus       155 ~~L~~L~Ls~n~l~~  169 (372)
T 3un9_A          155 CQITTLRLSNNPLTA  169 (372)
T ss_dssp             CCCCEEECCSSCCHH
T ss_pred             CccceeeCCCCCCCh
Confidence            334455555554433

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=94.54  E-value=0.088  Score=31.80  Aligned_cols=51  Identities=22%  Similarity=0.271  Sum_probs=44.0

Q ss_pred             CCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCC
Q psy17697         49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR  102 (110)
Q Consensus        49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~  102 (110)
                      .+..+..|...+|.  +-..|+.+.+.. .++.|...+|.++.+|+.+.+.+..
T Consensus         4 ~g~~vt~I~~~aF~--~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~~   54 (100)
T 2lz0_A            4 EGEPVVGMDKSLFA--GNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGED   54 (100)
T ss_dssp             CCCCCCSSCSCTTT--TCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred             CCCccCEecHHHhc--CCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCCC
Confidence            45678899999999  789999999987 5789999999999999999887754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=93.91  E-value=0.009  Score=45.36  Aligned_cols=62  Identities=21%  Similarity=0.178  Sum_probs=43.7

Q ss_pred             eeeEEEEeeCCCCccCCCCC-cCccCccCcccccEEeccCCCCcccC-cccccCCcCCcEEeCCCCCCcc
Q psy17697         38 AARVLKLKIGEKSNNIPHLP-ADAFRSTGLVNLHNLLLKDCNITDID-PDAFSGLGILIELDLTKNRIHT  105 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~-~~~f~~~~~~~L~~l~l~~n~l~~i~-~~~f~~l~~L~~l~Ls~N~l~~  105 (110)
                      .++.|++    ++|.+.... ...+.  +.++|+.|++++|.++... +..+..+++|+.|++++|+++.
T Consensus       464 ~L~~L~L----~~n~l~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          464 NVRWMLL----GYVGESDEGLMEFSR--GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             TCCEEEE----CSCCSSHHHHHHHHT--CCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             cceEeec----cCCCCCHHHHHHHHh--cCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            5788888    888776421 22234  5788999999999876532 2223567899999999998764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=92.08  E-value=0.022  Score=43.26  Aligned_cols=63  Identities=13%  Similarity=0.140  Sum_probs=36.5

Q ss_pred             eeeEEEEeeCCCCccCCCCCcC----ccCccCcccccEEeccCCCCcccCcc----cccCCcCCcEEeCCCCCCccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPAD----AFRSTGLVNLHNLLLKDCNITDIDPD----AFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~----~f~~~~~~~L~~l~l~~n~l~~i~~~----~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      .+++|++    ++|.+......    .+.  ..++|+.|++++|.++.+...    .+..+++|+.|++++|.+..+
T Consensus       165 ~L~~L~L----~~~~~~~~~~~~l~~~~~--~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l  235 (592)
T 3ogk_B          165 KIKTLLM----EESSFSEKDGKWLHELAQ--HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL  235 (592)
T ss_dssp             TCSEEEC----TTCEEECCCSHHHHHHHH--HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG
T ss_pred             CCCEEEC----ccccccCcchhHHHHHHh--cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH
Confidence            5666677    66665433211    122  356677777777777644322    234567777777777765543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=91.23  E-value=0.039  Score=36.39  Aligned_cols=15  Identities=20%  Similarity=0.202  Sum_probs=7.2

Q ss_pred             ccccEEeccCCCCcc
Q psy17697         67 VNLHNLLLKDCNITD   81 (110)
Q Consensus        67 ~~L~~l~l~~n~l~~   81 (110)
                      +.|+.|++++|.|+.
T Consensus        93 ~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           93 NTLKSLNVESNFISG  107 (185)
T ss_dssp             SSCCEEECCSSCCCH
T ss_pred             CCcCEEECcCCcCCH
Confidence            345555555555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=90.88  E-value=0.025  Score=42.89  Aligned_cols=60  Identities=18%  Similarity=0.192  Sum_probs=35.7

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCcc-CccCcccccEEeccCCCCcccCcc-cccCCcCCcEEeCCCCCC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAF-RSTGLVNLHNLLLKDCNITDIDPD-AFSGLGILIELDLTKNRI  103 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f-~~~~~~~L~~l~l~~n~l~~i~~~-~f~~l~~L~~l~Ls~N~l  103 (110)
                      .++.|++    ++|.+.......+ .  ++++|+.|++++|.++..... ....+++|+.|++++|.+
T Consensus       457 ~L~~L~L----~~~~i~~~~~~~l~~--~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          457 KMEMLSV----AFAGDSDLGMHHVLS--GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             TCCEEEE----ESCCSSHHHHHHHHH--HCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             hccEeec----cCCCCcHHHHHHHHh--cCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            4667777    7766543222112 2  356778888888777443322 223467788888887776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=89.47  E-value=0.049  Score=35.88  Aligned_cols=61  Identities=13%  Similarity=0.138  Sum_probs=44.0

Q ss_pred             eeeEEEEeeCCCCccCCCCC----cCccCccCcccccEEec--cCCCCcccCc----ccccCCcCCcEEeCCCCCCc
Q psy17697         38 AARVLKLKIGEKSNNIPHLP----ADAFRSTGLVNLHNLLL--KDCNITDIDP----DAFSGLGILIELDLTKNRIH  104 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~----~~~f~~~~~~~L~~l~l--~~n~l~~i~~----~~f~~l~~L~~l~Ls~N~l~  104 (110)
                      .++.|++    ++|.|...-    ...+.  ....|+.|++  ++|.++.-..    ..+...+.|+.|++++|.+.
T Consensus        94 ~L~~L~L----~~N~i~~~g~~~l~~~L~--~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           94 TLKSLNV----ESNFISGSGILALVEALQ--SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             SCCEEEC----CSSCCCHHHHHHHHHGGG--GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CcCEEEC----cCCcCCHHHHHHHHHHHH--hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            6888999    999887521    12233  3567999999  8899877432    23445688999999999875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=87.35  E-value=0.29  Score=32.62  Aligned_cols=58  Identities=19%  Similarity=0.314  Sum_probs=27.8

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCC-CcccCcccccCC----cCCcEEeCCCC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCN-ITDIDPDAFSGL----GILIELDLTKN  101 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~-l~~i~~~~f~~l----~~L~~l~Ls~N  101 (110)
                      .++.+++    +++.++..--..+.  +.++|+.|+++++. ++.---..+...    ++|+.|+|+++
T Consensus        62 ~L~~LDL----s~~~Itd~GL~~L~--~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C  124 (176)
T 3e4g_A           62 KIQAIDA----TDSCIMSIGFDHME--GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC  124 (176)
T ss_dssp             CEEEEEE----ESCCCCGGGGGGGT--TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred             eEeEEeC----cCCCccHHHHHHhc--CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence            4666666    66654432222233  45666666666652 433221222222    24566666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=86.61  E-value=0.88  Score=30.21  Aligned_cols=38  Identities=24%  Similarity=0.314  Sum_probs=31.2

Q ss_pred             ccccEEeccCCCCcccCcccccCCcCCcEEeCCCCC-Cc
Q psy17697         67 VNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNR-IH  104 (110)
Q Consensus        67 ~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~-l~  104 (110)
                      -.|+.++++++.|+..--..+.++++|+.|+|+++. |+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It   99 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE   99 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC
Confidence            459999999999877655667889999999999974 44

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=84.33  E-value=0.54  Score=35.46  Aligned_cols=59  Identities=14%  Similarity=0.194  Sum_probs=27.6

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCcc--CcccccEEeccCCCCcccCcccc----cCCcCCcEEeCCCC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRST--GLVNLHNLLLKDCNITDIDPDAF----SGLGILIELDLTKN  101 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~--~~~~L~~l~l~~n~l~~i~~~~f----~~l~~L~~l~Ls~N  101 (110)
                      .+++|++    ++|.+.......+..+  ..++|+.|+++++. ..+....+    ..+++|+.|++++|
T Consensus       157 ~L~~L~L----~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          157 NLKELDL----RESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             TCCEEEC----TTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCCEEeC----cCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            4555666    6555444332222100  23456666666654 22322222    22466666666665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	110
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 3e-05
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 50  SNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG 109
           +N I  +    F+   L NLH L+L +  I+ I P AF+ L  L  L L+KN++  L   
Sbjct: 40  NNKITEIKDGDFK--NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	110
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.47
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.44
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.33
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.72
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.65
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.65
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.63
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.63
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.6
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.6
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.53
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.52
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.5
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.5
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.27
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.05
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.03
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.94
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.94
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.91
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.81
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.8
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.63
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.54
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.47
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.39
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.37
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.17
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.32
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	94.37
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	92.71
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	90.97
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	90.6
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	88.81
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	87.3

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.47  E-value=2.1e-14  Score=95.68  Aligned_cols=84  Identities=26%  Similarity=0.371  Sum_probs=50.1

Q ss_pred             CCCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccC-------------------------CCCCcCccCc
Q psy17697         19 LTVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNI-------------------------PHLPADAFRS   63 (110)
Q Consensus        19 ~cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l-------------------------~~~~~~~f~~   63 (110)
                      .||..|.|.+..+.|... +         .+++|++    ++|.|                         ..++.+.|. 
T Consensus         1 ~CP~~C~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~L----s~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~-   75 (192)
T d1w8aa_           1 DCPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLL----NDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE-   75 (192)
T ss_dssp             CCCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEEC----CSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT-
T ss_pred             CcCCCCEEcCCEEEEeCCCcCccCCCCCCCCCEEEe----CCCCCcccccccccCCCceEeeeeccccccccccccccc-
Confidence            499999999887776533 1         4445555    55555                         444444444 


Q ss_pred             cCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         64 TGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        64 ~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                       +++.|+.+++++|+++.+++++|.++++|+.|+|++|+|+.+++
T Consensus        76 -~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~  119 (192)
T d1w8aa_          76 -GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP  119 (192)
T ss_dssp             -TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred             -cccccceeeeccccccccCHHHHhCCCcccccccCCccccccCH
Confidence             44555555555555666666556666666666666666665554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.2e-14  Score=90.50  Aligned_cols=84  Identities=24%  Similarity=0.316  Sum_probs=73.0

Q ss_pred             CCCCCccccc-CceeEEE--------E----eeeEEEEeeCCCCc-cCCCCCcCccCccCcccccEEeccCCCCcccCcc
Q psy17697         20 TVESCFNTWL-SVGKHHA--------L----AARVLKLKIGEKSN-NIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPD   85 (110)
Q Consensus        20 cp~~c~c~~~-~~~~~~~--------l----~l~~l~l~~~~~~n-~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~   85 (110)
                      ||..|.|... ++.|...        +    .+++|++    .+| .++.++...|.  ++++|+.|++++|+|+.|++.
T Consensus         1 CP~~C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l----~~n~~l~~i~~~~f~--~l~~L~~L~Ls~N~l~~i~~~   74 (156)
T d2ifga3           1 CPDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYI----ENQQHLQHLELRDLR--GLGELRNLTIVKSGLRFVAPD   74 (156)
T ss_dssp             CCSSSCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEEC----CSCSSCCEECGGGSC--SCCCCSEEECCSSCCCEECTT
T ss_pred             CcCCCCcCCCCeEEecCCCCccCcccccCccccCeeec----CCCccccccCchhhc--cccccCcceeeccccCCcccc
Confidence            8999999753 3444433        1    8889999    876 59999999999  899999999999999999999


Q ss_pred             cccCCcCCcEEeCCCCCCccccCC
Q psy17697         86 AFSGLGILIELDLTKNRIHTLHPG  109 (110)
Q Consensus        86 ~f~~l~~L~~l~Ls~N~l~~l~~~  109 (110)
                      +|.++++|+.|+|++|+|++++++
T Consensus        75 ~f~~l~~L~~L~Ls~N~l~~l~~~   98 (156)
T d2ifga3          75 AFHFTPRLSRLNLSFNALESLSWK   98 (156)
T ss_dssp             GGGSCSCCCEEECCSSCCSCCCST
T ss_pred             cccccccccceeccCCCCcccChh
Confidence            999999999999999999999874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.33  E-value=7.9e-13  Score=92.68  Aligned_cols=86  Identities=30%  Similarity=0.413  Sum_probs=78.1

Q ss_pred             CCCCCCCcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccc
Q psy17697         18 GLTVESCFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAF   87 (110)
Q Consensus        18 ~~cp~~c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f   87 (110)
                      .+||..|.|.+..+.|... +         .++.|++    ++|.|+.+++..|.  ++++|+.+++++|.+..+++.+|
T Consensus         2 ~~~p~~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~L----s~N~i~~l~~~~f~--~l~~L~~L~l~~n~~~~i~~~~f   75 (305)
T d1xkua_           2 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDL----QNNKITEIKDGDFK--NLKNLHTLILINNKISKISPGAF   75 (305)
T ss_dssp             CCCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEEC----CSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTTTT
T ss_pred             CCCCCCCEecCCEEEecCCCCCccCCCCCCCCCEEEC----cCCcCCCcChhHhh--ccccccccccccccccccchhhh
Confidence            5799999999888877554 2         7889999    99999999999998  78999999999999999999999


Q ss_pred             cCCcCCcEEeCCCCCCccccCC
Q psy17697         88 SGLGILIELDLTKNRIHTLHPG  109 (110)
Q Consensus        88 ~~l~~L~~l~Ls~N~l~~l~~~  109 (110)
                      ..++.|+.+++++|+++.+|..
T Consensus        76 ~~l~~L~~L~l~~n~l~~l~~~   97 (305)
T d1xkua_          76 APLVKLERLYLSKNQLKELPEK   97 (305)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSS
T ss_pred             hCCCccCEecccCCccCcCccc
Confidence            9999999999999999988753

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.89  E-value=1.1e-09  Score=72.25  Aligned_cols=62  Identities=31%  Similarity=0.442  Sum_probs=59.1

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHT  105 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~  105 (110)
                      .++.|++    ++|.|+.+++++|.  ++++|+.|+|++|+|+.+++++|..+++|+.++|++|.+..
T Consensus        79 ~L~~L~L----s~N~l~~l~~~~F~--~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          79 HIQELQL----GENKIKEISNKMFL--GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TCCEEEC----CSCCCCEECSSSST--TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccceeee----ccccccccCHHHHh--CCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            7889999    99999999999999  89999999999999999999999999999999999998764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.4e-08  Score=69.75  Aligned_cols=66  Identities=29%  Similarity=0.390  Sum_probs=56.0

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG  109 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~  109 (110)
                      .+..+.+    ++|.+..+++..|.  +++.++.+++++|+++.+++..|..+++|+.|+|++|+|+++|++
T Consensus       125 ~l~~L~l----~~n~l~~l~~~~~~--~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~  190 (266)
T d1p9ag_         125 ELQELYL----KGNELKTLPPGLLT--PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG  190 (266)
T ss_dssp             TCCEEEC----TTSCCCCCCTTTTT--TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             ccccccc----cccccceecccccc--ccccchhcccccccccccCccccccccccceeecccCCCcccChh
Confidence            6677888    88888888888887  678888899999998888888888888899999999988888763

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.7e-08  Score=64.87  Aligned_cols=60  Identities=27%  Similarity=0.313  Sum_probs=55.6

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH  104 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~  104 (110)
                      .++.|++    ++|.|+.+++.+|.  ++++|+.+++++|+++.+++..|..+ +|+.++|++|.+.
T Consensus        57 ~L~~L~L----s~N~l~~i~~~~f~--~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          57 ELRNLTI----VKSGLRFVAPDAFH--FTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             CCSEEEC----CSSCCCEECTTGGG--SCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             ccCccee----eccccCCccccccc--ccccccceeccCCCCcccChhhhccc-cccccccCCCccc
Confidence            8999999    99999999999999  89999999999999999999988665 7999999999874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.65  E-value=2.4e-08  Score=61.94  Aligned_cols=62  Identities=27%  Similarity=0.350  Sum_probs=52.7

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.+++    ++|.++.+|+. |.  .+++|+.+++++|.++.++  .+..+++|+.+++++|+|+.++.
T Consensus        21 ~L~~L~l----s~N~l~~lp~~-~~--~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N~i~~~~~   82 (124)
T d1dcea3          21 LVTHLDL----SHNRLRALPPA-LA--ALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAA   82 (124)
T ss_dssp             TCCEEEC----CSSCCCCCCGG-GG--GCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSST
T ss_pred             CCCEEEC----CCCccCcchhh-hh--hhhcccccccccccccccC--ccccccccCeEECCCCccCCCCC
Confidence            6788999    99999999864 55  5889999999999999884  37889999999999999988764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.8e-08  Score=67.70  Aligned_cols=82  Identities=20%  Similarity=0.322  Sum_probs=60.4

Q ss_pred             CCCC-CcccccCceeEEE-E---------eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcc-cCcccc
Q psy17697         20 TVES-CFNTWLSVGKHHA-L---------AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITD-IDPDAF   87 (110)
Q Consensus        20 cp~~-c~c~~~~~~~~~~-l---------~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~-i~~~~f   87 (110)
                      |+.. |.|....+.|... +         .++.|++    ++|.++.++..+|.  ++++|+.+++++|.+.. +++.+|
T Consensus         1 ~~~~~C~C~~~~i~c~~~~l~~iP~~l~~~l~~L~L----s~n~i~~l~~~~f~--~l~~L~~L~ls~n~~~~~i~~~~f   74 (242)
T d1xwdc1           1 CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRF----VLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADVF   74 (242)
T ss_dssp             CCCSSEEECSSEEEEESCSCSSCCSCSCSCCSEEEE----ESCCCCEECTTTTT--TCTTCCEEEEESCTTCCEECSSSE
T ss_pred             CcCCcCCCcCCEEEEeCCCCCCcCCCCCCCCCEEEC----cCCcCCccChhHhh--ccchhhhhhhccccccceeecccc
Confidence            5544 8888766666544 1         7889999    99999999999998  78999999999997654 566667


Q ss_pred             cCCcCCcEEeCCC-CCCcccc
Q psy17697         88 SGLGILIELDLTK-NRIHTLH  107 (110)
Q Consensus        88 ~~l~~L~~l~Ls~-N~l~~l~  107 (110)
                      .+++.++.+.+.+ |.+..++
T Consensus        75 ~~l~~l~~l~~~~~n~l~~~~   95 (242)
T d1xwdc1          75 SNLPKLHEIRIEKANNLLYIN   95 (242)
T ss_dssp             ESCTTCCEEEEECCTTCCEEC
T ss_pred             ccccccccccccccccccccc
Confidence            7666766666543 4555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.63  E-value=3.8e-08  Score=61.01  Aligned_cols=62  Identities=19%  Similarity=0.271  Sum_probs=50.8

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCc-ccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~-~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.+++    ++|.++.++.  +.  .+++|+.+++++|.++.++. ..+..+++|+.+++++|.++..+
T Consensus        44 ~L~~L~l----~~N~i~~l~~--~~--~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          44 CLEVLQA----SDNALENVDG--VA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             TCCEEEC----CSSCCCCCGG--GT--TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             ccccccc----ccccccccCc--cc--cccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            7888889    9999988864  55  67889999999999888764 56788889999999999887654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=4.5e-08  Score=63.22  Aligned_cols=61  Identities=30%  Similarity=0.324  Sum_probs=29.4

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      .++.|++    ++|.|+.++.  |.  .+++|+.+++++|.++.+++..|..+++|+.|++++|.|+.+
T Consensus        42 ~L~~L~L----s~N~i~~l~~--~~--~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~  102 (162)
T d1a9na_          42 QFDAIDF----SDNEIRKLDG--FP--LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL  102 (162)
T ss_dssp             CCSEEEC----CSSCCCEECC--CC--CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCG
T ss_pred             cCCEEEC----CCCCCCccCC--cc--cCcchhhhhcccccccCCCccccccccccccceecccccccc
Confidence            3444555    5555544421  33  344555555555555555444444455555555555554443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.5e-08  Score=68.42  Aligned_cols=63  Identities=22%  Similarity=0.305  Sum_probs=54.6

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .+++|++    ++|.|+.++...|.  ++++|+.|++++|+|+.++.  +..+++|+.|++++|+++.+++
T Consensus        32 ~l~~L~L----s~N~i~~l~~~~f~--~l~~L~~L~L~~N~l~~l~~--~~~l~~L~~L~Ls~N~l~~~~~   94 (266)
T d1p9ag_          32 DTTILHL----SENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQSLPL   94 (266)
T ss_dssp             TCCEEEC----TTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCSSCCC
T ss_pred             CCCEEEC----cCCcCCCcCHHHhh--cccccccccccccccccccc--cccccccccccccccccccccc
Confidence            6889999    99999999999998  78999999999999998854  4678899999999998877654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.53  E-value=2.5e-08  Score=69.54  Aligned_cols=80  Identities=26%  Similarity=0.365  Sum_probs=62.8

Q ss_pred             CCCcccccCceeEEE---EeeeEEEEeeCCCCccCCC---CCcCccCccCcccccEEeccC-CCCcccCcccccCCcCCc
Q psy17697         22 ESCFNTWLSVGKHHA---LAARVLKLKIGEKSNNIPH---LPADAFRSTGLVNLHNLLLKD-CNITDIDPDAFSGLGILI   94 (110)
Q Consensus        22 ~~c~c~~~~~~~~~~---l~l~~l~l~~~~~~n~l~~---~~~~~f~~~~~~~L~~l~l~~-n~l~~i~~~~f~~l~~L~   94 (110)
                      +.|.|.|.++.|...   ..++.|++    +++.+..   +|+...   .+++|+.|++++ |++++.-|..|..+++|+
T Consensus        32 d~C~~~w~gv~C~~~~~~~~v~~L~L----~~~~l~g~~~lp~~l~---~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~  104 (313)
T d1ogqa_          32 DCCNRTWLGVLCDTDTQTYRVNNLDL----SGLNLPKPYPIPSSLA---NLPYLNFLYIGGINNLVGPIPPAIAKLTQLH  104 (313)
T ss_dssp             CTTTTCSTTEEECCSSSCCCEEEEEE----ECCCCSSCEECCGGGG---GCTTCSEEEEEEETTEESCCCGGGGGCTTCS
T ss_pred             CCCCCcCCCeEEeCCCCcEEEEEEEC----CCCCCCCCCCCChHHh---cCccccccccccccccccccccccccccccc
Confidence            456778999998765   37888999    9988874   666554   489999999986 788754455588899999


Q ss_pred             EEeCCCCCCccccC
Q psy17697         95 ELDLTKNRIHTLHP  108 (110)
Q Consensus        95 ~l~Ls~N~l~~l~~  108 (110)
                      .|+|++|++..+++
T Consensus       105 ~L~Ls~N~l~~~~~  118 (313)
T d1ogqa_         105 YLYITHTNVSGAIP  118 (313)
T ss_dssp             EEEEEEECCEEECC
T ss_pred             hhhhcccccccccc
Confidence            99999999887654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=4.9e-08  Score=67.26  Aligned_cols=56  Identities=39%  Similarity=0.667  Sum_probs=27.3

Q ss_pred             CCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697         49 KSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        49 ~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      ++|.++.+++..|.  ++++|+.+++++|+++.+.+..|..+++|+.+++++|.++.+
T Consensus       161 ~~N~l~~l~~~~f~--~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~  216 (284)
T d1ozna_         161 HGNRISSVPERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL  216 (284)
T ss_dssp             CSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             ccCcccccchhhhc--cccccchhhhhhccccccChhHhhhhhhcccccccccccccc
Confidence            44444444444444  444444555555544444444444444555555555544444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=3.8e-08  Score=63.55  Aligned_cols=60  Identities=27%  Similarity=0.342  Sum_probs=29.4

Q ss_pred             eeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         39 ARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        39 l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      +++|++    ++|.|+.++ +.+.  .+++|+.+++++|.|+.++  .|..+++|+.|++++|.++.++
T Consensus        20 lr~L~L----~~n~I~~i~-~~~~--~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~   79 (162)
T d1a9na_          20 DRELDL----RGYKIPVIE-NLGA--TLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIG   79 (162)
T ss_dssp             CEEEEC----TTSCCCSCC-CGGG--GTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEEC
T ss_pred             CcEEEC----CCCCCCccC-cccc--ccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCC
Confidence            344555    555555553 2233  3445555555555555542  2444555555555555555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.1e-07  Score=65.50  Aligned_cols=65  Identities=40%  Similarity=0.604  Sum_probs=57.1

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.+++    ++|.++.+++..|.  ..++++.+++++|+++.+++.+|.++++|+.+++++|+++.+++
T Consensus       130 ~L~~l~l----~~N~l~~i~~~~f~--~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~  194 (284)
T d1ozna_         130 ALQYLYL----QDNALQALPDDTFR--DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP  194 (284)
T ss_dssp             TCCEEEC----CSSCCCCCCTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             ccchhhh----ccccccccChhHhc--cccchhhcccccCcccccchhhhccccccchhhhhhccccccCh
Confidence            6778888    99999999988888  67889999999999999998889999999999999999887765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.50  E-value=9e-08  Score=66.29  Aligned_cols=64  Identities=16%  Similarity=0.216  Sum_probs=48.7

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.+.+    ++|.+..++...|.  ++++|+.|++++|.++.++. .|..+++|+.|++++|+|++++.
T Consensus       196 ~l~~L~~----s~n~l~~~~~~~~~--~l~~L~~L~L~~N~L~~lp~-~l~~l~~L~~L~Ls~N~i~~i~~  259 (305)
T d1xkua_         196 NLAKLGL----SFNSISAVDNGSLA--NTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGS  259 (305)
T ss_dssp             TCCEEEC----CSSCCCEECTTTGG--GSTTCCEEECCSSCCSSCCT-TTTTCSSCCEEECCSSCCCCCCT
T ss_pred             ccccccc----cccccccccccccc--ccccceeeeccccccccccc-ccccccCCCEEECCCCccCccCh
Confidence            5567777    78888887777777  67788888888888887754 47777888888888888877754

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=5.3e-07  Score=60.23  Aligned_cols=65  Identities=29%  Similarity=0.439  Sum_probs=48.3

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEE-eccCCCCcccCcccccCCcCCcEEeCCCCCCccccCC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNL-LLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHPG  109 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l-~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~~  109 (110)
                      .+..+.+    .+|.+..++...|.   ...++.+ .+.+|+++.+++..|.++++|+.|++++|+|+++|++
T Consensus       154 ~l~~L~l----~~n~l~~i~~~~~~---~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~  219 (242)
T d1xwdc1         154 ESVILWL----NKNGIQEIHNCAFN---GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY  219 (242)
T ss_dssp             SCEEEEC----CSSCCCEECTTTTT---TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSS
T ss_pred             cceeeec----cccccccccccccc---chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHH
Confidence            4556777    78888888888776   3444444 5677788888888888888888888888888887653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.05  E-value=3e-06  Score=56.28  Aligned_cols=61  Identities=30%  Similarity=0.500  Sum_probs=51.2

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.+.+    ++|.+...++  |.  ++++|+.+++++|+++.+++  |..+++|+.|++++|+++.+++
T Consensus       152 ~L~~L~l----~~n~~~~~~~--l~--~l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~i~~  212 (227)
T d1h6ua2         152 NLQYLSI----GNAQVSDLTP--LA--NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP  212 (227)
T ss_dssp             TCCEEEC----CSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG
T ss_pred             ccccccc----cccccccchh--hc--ccccceecccCCCccCCChh--hcCCCCCCEEECcCCcCCCCcc
Confidence            6788888    8888876554  55  68899999999999998743  7788999999999999998864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.03  E-value=2.9e-06  Score=59.38  Aligned_cols=61  Identities=25%  Similarity=0.396  Sum_probs=51.0

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.+++    ++|.++.+++  +.  .+++|+.|++++|+++.++  .|..+++|+.|++++|+++.+++
T Consensus       308 ~l~~L~l----s~n~l~~l~~--l~--~l~~L~~L~L~~n~l~~l~--~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         308 NLTYLTL----YFNNISDISP--VS--SLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             TCSEEEC----CSSCCSCCGG--GG--GCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCBCGG
T ss_pred             ccCeEEC----CCCCCCCCcc--cc--cCCCCCEEECCCCCCCCCh--hHcCCCCCCEEECCCCcCCCChh
Confidence            6778888    9999888764  55  6789999999999998874  47889999999999999988764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.94  E-value=5.8e-06  Score=57.76  Aligned_cols=60  Identities=22%  Similarity=0.366  Sum_probs=36.1

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .+++|++    +++.|+.+..  +.  .+++|+.|++++|+++.+++  +..+++|+.|++++|.++.++
T Consensus        45 ~l~~L~l----~~~~I~~l~g--l~--~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~  104 (384)
T d2omza2          45 QVTTLQA----DRLGIKSIDG--VE--YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT  104 (384)
T ss_dssp             TCCEEEC----CSSCCCCCTT--GG--GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred             CCCEEEC----CCCCCCCccc--cc--cCCCCCEEeCcCCcCCCCcc--ccCCccccccccccccccccc
Confidence            4556666    6666665532  23  35666666666666666643  556666666666666665544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.94  E-value=6.4e-06  Score=53.86  Aligned_cols=60  Identities=28%  Similarity=0.507  Sum_probs=50.2

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.+++    ++|.+..++.  +.  +.++++.+++.+|.++.++  .|.++++|+.|++++|+++.++
T Consensus       129 ~L~~L~l----~~n~l~~~~~--l~--~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         129 NLNRLEL----SSNTISDISA--LS--GLTSLQQLNFSSNQVTDLK--PLANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             TCSEEEC----CSSCCCCCGG--GT--TCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG
T ss_pred             hhHHhhh----hhhhhccccc--cc--ccccccccccccccccCCc--cccCCCCCCEEECCCCCCCCCc
Confidence            6788888    8998887653  45  5788999999999998875  3788999999999999998875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.94  E-value=3.9e-06  Score=57.99  Aligned_cols=64  Identities=19%  Similarity=0.239  Sum_probs=48.3

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCc-cccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIH-TLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~-~l~~  108 (110)
                      .++.+++    .+|.+...++. +.  ..++++.+++++|++++..|..|..+++|+.|+|++|+|+ .+|+
T Consensus       222 ~l~~l~~----~~~~l~~~~~~-~~--~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         222 NTQKIHL----AKNSLAFDLGK-VG--LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             CCSEEEC----CSSEECCBGGG-CC--CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             ccccccc----ccccccccccc-cc--cccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            5667777    88877765554 33  4678888899999888655666888888999999999887 5664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.91  E-value=9.6e-06  Score=55.72  Aligned_cols=57  Identities=18%  Similarity=0.202  Sum_probs=48.5

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .+++|++    ++|.+..+|.      .+++|+.|++++|+|+.++..    +.+|+.|++++|+++++|.
T Consensus       285 ~L~~L~L----s~N~l~~lp~------~~~~L~~L~L~~N~L~~l~~~----~~~L~~L~L~~N~L~~lp~  341 (353)
T d1jl5a_         285 SLEELNV----SNNKLIELPA------LPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPLREFPD  341 (353)
T ss_dssp             TCCEEEC----CSSCCSCCCC------CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCCC
T ss_pred             CCCEEEC----CCCccCcccc------ccCCCCEEECCCCcCCccccc----cCCCCEEECcCCcCCCCCc
Confidence            6889999    9999998884      346899999999999988642    4689999999999999875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.81  E-value=1.6e-05  Score=51.90  Aligned_cols=58  Identities=22%  Similarity=0.381  Sum_probs=27.9

Q ss_pred             eeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697         39 ARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        39 l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      ++.+++    +++.+..+..  +.  .+++|+.|++++|+++.+++  +.++++|+.+++++|.+..+
T Consensus        42 l~~L~l----~~~~i~~l~~--l~--~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~   99 (199)
T d2omxa2          42 VTTLQA----DRLGIKSIDG--VE--YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI   99 (199)
T ss_dssp             CCEEEC----TTSCCCCCTT--GG--GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             CCEEEC----CCCCCCCccc--cc--cCCCcCcCccccccccCccc--ccCCcccccccccccccccc
Confidence            444555    5555554432  22  24455555555555554432  44455555555555554443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.80  E-value=1.8e-05  Score=52.05  Aligned_cols=59  Identities=25%  Similarity=0.392  Sum_probs=35.4

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      .+++|++    ++|.+..+++  +.  .+++|+.+++++|+++.++  .+..+++|+.+++++|.+..+
T Consensus        69 ~L~~L~L----~~n~i~~l~~--~~--~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~~~~~~~  127 (210)
T d1h6ta2          69 NVTKLFL----NGNKLTDIKP--LA--NLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGISDI  127 (210)
T ss_dssp             TCCEEEC----CSSCCCCCGG--GT--TCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTTSCCCCC
T ss_pred             CCCEEeC----CCccccCccc--cc--cCccccccccccccccccc--ccccccccccccccccccccc
Confidence            5666666    6666666553  23  4566666666666666653  255566666666666665544

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=1.6e-06  Score=55.52  Aligned_cols=63  Identities=21%  Similarity=0.055  Sum_probs=52.7

Q ss_pred             eeeEEEEeeCCCCccCCCCCc--CccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPA--DAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~--~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      .+++|++    ++|.|+.++.  ..+.  .+++|+.+++++|.|+.++.-.+.....|+.+++++|.+...
T Consensus        66 ~L~~L~L----s~N~i~~l~~~~~~~~--~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          66 ELLSLNL----SNNRLYRLDDMSSIVQ--KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             TCCCCCC----CSSCCCCCSGGGTHHH--HSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             CCCEeeC----CCccccCCchhHHHHh--hCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            6889999    9999999875  3455  578999999999999999886566667899999999998754

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.63  E-value=4.2e-05  Score=50.25  Aligned_cols=60  Identities=25%  Similarity=0.359  Sum_probs=47.3

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.+++    ++|.+..++.  +.  .+++|+.+++++|.++.+++  +..+++|+.+++++|+++.++
T Consensus        47 ~L~~L~l----~~~~i~~l~~--l~--~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~  106 (210)
T d1h6ta2          47 SIDQIIA----NNSDIKSVQG--IQ--YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS  106 (210)
T ss_dssp             TCCEEEC----TTSCCCCCTT--GG--GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG
T ss_pred             CccEEEC----cCCCCCCchh--Hh--hCCCCCEEeCCCccccCccc--cccCccccccccccccccccc
Confidence            5677888    8888887764  44  47888899999998888754  567888999999988888765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.54  E-value=1.7e-06  Score=57.19  Aligned_cols=60  Identities=32%  Similarity=0.342  Sum_probs=32.4

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      +++.|++    ++|.|+.++.  +.  ++++|+.|++++|.++.++.- +...+.|+.|++++|.++.+
T Consensus        49 ~L~~L~L----s~n~I~~i~~--l~--~l~~L~~L~Ls~N~i~~i~~~-~~~~~~L~~L~l~~N~i~~l  108 (198)
T d1m9la_          49 ACKHLAL----STNNIEKISS--LS--GMENLRILSLGRNLIKKIENL-DAVADTLEELWISYNQIASL  108 (198)
T ss_dssp             TCCEEEC----SEEEESCCCC--HH--HHTTCCEEECCEEEECSCSSH-HHHHHHCCEEECSEEECCCH
T ss_pred             ccceeEC----cccCCCCccc--cc--CCccccChhhccccccccccc-cccccccccccccccccccc
Confidence            4556666    6666666542  44  455666666666666555322 22334555555555555544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.47  E-value=9.7e-05  Score=48.66  Aligned_cols=60  Identities=28%  Similarity=0.409  Sum_probs=45.2

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCcccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLH  107 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~  107 (110)
                      .++.+.+    .+|.++.++.  +.  .+++|+.+++++|.++.+.+  |..+++++.+++++|.++.++
T Consensus        42 ~L~~L~l----~~~~i~~l~~--l~--~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~  101 (227)
T d1h6ua2          42 GITTLSA----FGTGVTTIEG--VQ--YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS  101 (227)
T ss_dssp             TCCEEEC----TTSCCCCCTT--GG--GCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG
T ss_pred             CcCEEEC----CCCCCCcchh--Hh--cCCCCcEeecCCceeecccc--ccccccccccccccccccccc
Confidence            6777888    8888887742  45  57888888888888877754  677788888888888777654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.39  E-value=0.00015  Score=49.44  Aligned_cols=57  Identities=21%  Similarity=0.290  Sum_probs=34.9

Q ss_pred             eeeEEEEeeCCCCccCCCCCcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCCCCCccccC
Q psy17697         38 AARVLKLKIGEKSNNIPHLPADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      +++.|++    ++|.|+.+|..      ..+|+.|++++|+++.++.-    .+.|++|++++|.++.+|+
T Consensus        59 ~L~~L~L----s~N~l~~lp~~------~~~L~~L~l~~n~l~~l~~l----p~~L~~L~L~~n~l~~lp~  115 (353)
T d1jl5a_          59 HLESLVA----SCNSLTELPEL------PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLPE  115 (353)
T ss_dssp             TCSEEEC----CSSCCSSCCCC------CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCCC
T ss_pred             CCCEEEC----CCCCCcccccc------hhhhhhhhhhhcccchhhhh----ccccccccccccccccccc
Confidence            4566666    66666666532      23566666666666655321    2457778888887777764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.37  E-value=2.9e-06  Score=56.02  Aligned_cols=40  Identities=33%  Similarity=0.414  Sum_probs=22.2

Q ss_pred             cccccEEeccCCCCcccCc-ccccCCcCCcEEeCCCCCCcc
Q psy17697         66 LVNLHNLLLKDCNITDIDP-DAFSGLGILIELDLTKNRIHT  105 (110)
Q Consensus        66 ~~~L~~l~l~~n~l~~i~~-~~f~~l~~L~~l~Ls~N~l~~  105 (110)
                      +++|+.+++++|+++.+.. ..|..+++|+.|++++|.+..
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            4555555556655555533 345556666666666665543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=3.7e-05  Score=48.89  Aligned_cols=44  Identities=18%  Similarity=0.214  Sum_probs=38.1

Q ss_pred             CcccccEEeccCCCCcccCc--ccccCCcCCcEEeCCCCCCccccC
Q psy17697         65 GLVNLHNLLLKDCNITDIDP--DAFSGLGILIELDLTKNRIHTLHP  108 (110)
Q Consensus        65 ~~~~L~~l~l~~n~l~~i~~--~~f~~l~~L~~l~Ls~N~l~~l~~  108 (110)
                      .++.|+.+++++|+|+.+.+  ..+..+++|+.|++++|.|+++++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~  108 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE  108 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGG
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchh
Confidence            46789999999999999864  456778999999999999998764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0013  Score=45.92  Aligned_cols=62  Identities=16%  Similarity=0.217  Sum_probs=33.5

Q ss_pred             eeeEEEEeeCCCCccCCCCC----cCccCccCcccccEEeccCCCCcccC----ccccc-CCcCCcEEeCCCCCCcc
Q psy17697         38 AARVLKLKIGEKSNNIPHLP----ADAFRSTGLVNLHNLLLKDCNITDID----PDAFS-GLGILIELDLTKNRIHT  105 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~----~~~f~~~~~~~L~~l~l~~n~l~~i~----~~~f~-~l~~L~~l~Ls~N~l~~  105 (110)
                      .++++++    ++|.++...    ...+.  ..++|+.|++++|.|+...    ...+. ...+|+.|++++|+++.
T Consensus        28 ~l~~L~L----~~~~i~~~~~~~l~~~L~--~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~   98 (460)
T d1z7xw1          28 QCQVVRL----DDCGLTEARCKDISSALR--VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG   98 (460)
T ss_dssp             TCSEEEE----ESSCCCHHHHHHHHHHHH--TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred             CCCEEEe----CCCCCCHHHHHHHHHHHh--cCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccc
Confidence            4566777    666655211    11223  3566777777777765321    11121 22467777777777653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=0.0095  Score=41.30  Aligned_cols=62  Identities=24%  Similarity=0.341  Sum_probs=45.6

Q ss_pred             eeeEEEEeeCCCCccCCC-----CCcCccCccCcccccEEeccCCCCcccC----cccccCCcCCcEEeCCCCCCcc
Q psy17697         38 AARVLKLKIGEKSNNIPH-----LPADAFRSTGLVNLHNLLLKDCNITDID----PDAFSGLGILIELDLTKNRIHT  105 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~-----~~~~~f~~~~~~~L~~l~l~~n~l~~i~----~~~f~~l~~L~~l~Ls~N~l~~  105 (110)
                      .++.|++    ++|.|..     +......  ....|+.|++++|+++...    ..++...++|+.+++++|.++.
T Consensus        56 ~L~~LdL----s~N~i~~~~~~~l~~~l~~--~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          56 ALAELNL----RSNELGDVGVHCVLQGLQT--PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCEEEC----TTCCCHHHHHHHHHHTTCS--TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCEEEC----cCCcCChHHHHHHHHHHhc--CCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            6889999    9998753     2222112  2357999999999987643    3456778999999999998864

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.71  E-value=0.013  Score=39.47  Aligned_cols=57  Identities=18%  Similarity=0.201  Sum_probs=28.9

Q ss_pred             eeeEEEEeeCCCCccCCCC-CcCccCccCcccccEEeccCCCCcccCcccccCCcCCcEEeCCC
Q psy17697         38 AARVLKLKIGEKSNNIPHL-PADAFRSTGLVNLHNLLLKDCNITDIDPDAFSGLGILIELDLTK  100 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~-~~~~f~~~~~~~L~~l~l~~n~l~~i~~~~f~~l~~L~~l~Ls~  100 (110)
                      .++.+++    +++.+..- ....+.  ..++|+.+.++++.++......+..+++|+.|++++
T Consensus        47 ~L~~LdL----s~~~i~~~~l~~l~~--~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          47 RVQHMDL----SNSVIEVSTLHGILS--QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CCCEEEC----TTCEECHHHHHHHHT--TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCCEEEC----CCCccCHHHHHHHHH--hCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            4555666    55544321 122233  345566666666655443334445555566666655

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.97  E-value=0.13  Score=34.27  Aligned_cols=58  Identities=19%  Similarity=0.143  Sum_probs=33.1

Q ss_pred             eeeEEEEeeCCCCc-cCCCCCcCccCccCcccccEEeccCC-CCcccCcccccCCcCCcEEeCCCC
Q psy17697         38 AARVLKLKIGEKSN-NIPHLPADAFRSTGLVNLHNLLLKDC-NITDIDPDAFSGLGILIELDLTKN  101 (110)
Q Consensus        38 ~l~~l~l~~~~~~n-~l~~~~~~~f~~~~~~~L~~l~l~~n-~l~~i~~~~f~~l~~L~~l~Ls~N  101 (110)
                      +++.|++    +++ .++.-.-..+.  .+++|+.++++++ .++.-....+..+++|+.|+++++
T Consensus       176 ~L~~L~L----~~~~~itd~~~~~l~--~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         176 NLVHLDL----SDSVMLKNDCFQEFF--QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCSEEEC----TTCTTCCGGGGGGGG--GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccc----ccccCCCchhhhhhc--ccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            5667777    664 34322222233  3567777777773 555443344566677777777665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=90.60  E-value=0.046  Score=37.21  Aligned_cols=39  Identities=26%  Similarity=0.217  Sum_probs=19.5

Q ss_pred             cccccEEeccCCCCcccC----cccccCCcCCcEEeCCCCCCc
Q psy17697         66 LVNLHNLLLKDCNITDID----PDAFSGLGILIELDLTKNRIH  104 (110)
Q Consensus        66 ~~~L~~l~l~~n~l~~i~----~~~f~~l~~L~~l~Ls~N~l~  104 (110)
                      .++|+.+++++|.++...    ...+...+.|+.|++++|.|+
T Consensus       214 ~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         214 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            455666666666544321    122344455556666665554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=88.81  E-value=0.056  Score=36.77  Aligned_cols=15  Identities=33%  Similarity=0.439  Sum_probs=7.9

Q ss_pred             CcCCcEEeCCCCCCc
Q psy17697         90 LGILIELDLTKNRIH  104 (110)
Q Consensus        90 l~~L~~l~Ls~N~l~  104 (110)
                      .++|+.+++++|.+.
T Consensus       301 ~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         301 MPDLLFLELNGNRFS  315 (344)
T ss_dssp             CTTCCEEECTTSBSC
T ss_pred             CCCCCEEECCCCcCC
Confidence            345555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.30  E-value=0.12  Score=31.95  Aligned_cols=63  Identities=14%  Similarity=0.055  Sum_probs=37.6

Q ss_pred             eeeEEEEeeCCCCccCCCCCcC----ccCccCcccccEEeccCCCCcccCc----ccccCCcCCcEEeCCCCCCccc
Q psy17697         38 AARVLKLKIGEKSNNIPHLPAD----AFRSTGLVNLHNLLLKDCNITDIDP----DAFSGLGILIELDLTKNRIHTL  106 (110)
Q Consensus        38 ~l~~l~l~~~~~~n~l~~~~~~----~f~~~~~~~L~~l~l~~n~l~~i~~----~~f~~l~~L~~l~Ls~N~l~~l  106 (110)
                      .++.|++    ++|.+..-...    .+.  ..+.|+.+++++|.++.-.-    .++...++|+.|++++|.+..+
T Consensus        45 ~L~~L~L----s~n~l~~~~~~~la~~L~--~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~  115 (167)
T d1pgva_          45 HIEKFSL----ANTAISDSEARGLIELIE--TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL  115 (167)
T ss_dssp             CCCEEEC----TTSCCBHHHHTTHHHHHH--HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred             ccceeec----cccccchhHHHHHhhhhh--hcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCc
Confidence            5677777    77776532111    122  23567888888887665221    2345556788888887765543