Psyllid ID: psy17699

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
MNFGSGGWWFEFKSSHKISVVFSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQLGQVQYSSCRHIVIEMNIAGV
ccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccEEEEEEccccccccccccEEEEccEEEEcccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccEEEEEEEEccc
ccccccccEEEEccccEEEEEccHHHHHHHHHHHccccccccccEEEEEEEEcccccEEEEEcccccccccccccEEEEEEEEEccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHEcccEEEccccEEEEEEEEccc
mnfgsggwwfefksSHKISVVFSAGNDIKFMLNtiegprgglthniqvplldfdsnvescekskseghhgieeevflslpcvmadngvthivnqplTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQLGQVQYSSCRHIVIEMNIAGV
MNFGSGGWWFEFKSSHKISVVFSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQLGQVQYSSCRHIVIEMNIAGV
MNFGSGGWWFEFKSSHKISVVFSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQLGQVQYSSCRHIVIEMNIAGV
*****GGWWFEFKSSHKISVVFSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSN*************GIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQLGQVQYSSCRHIVIEMNI***
***GSGGWWFEFKSSHKISVVFSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQLGQVQYSSCRHIVIEMNIAGV
MNFGSGGWWFEFKSSHKISVVFSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNV***********HGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQLGQVQYSSCRHIVIEMNIAGV
****SGGWWFEFKSSHKISVVFSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQLGQVQYSSCRHIVIEMNIAG*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNFGSGGWWFEFKSSHKISVVFSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAISQDYMYFLTTYIPKIFQLGQVQYSSCRHIVIEMNIAGV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query149 2.2.26 [Sep-21-2011]
Q95028332 L-lactate dehydrogenase O yes N/A 0.308 0.138 0.586 5e-09
Q4R816381 L-lactate dehydrogenase A N/A N/A 0.308 0.120 0.521 6e-09
Q9PT42333 L-lactate dehydrogenase B N/A N/A 0.308 0.138 0.543 1e-08
Q98SK9333 L-lactate dehydrogenase B N/A N/A 0.308 0.138 0.521 2e-08
Q5E9B1334 L-lactate dehydrogenase B no N/A 0.308 0.137 0.521 5e-08
P42119334 L-lactate dehydrogenase B N/A N/A 0.308 0.137 0.521 5e-08
P00337333 L-lactate dehydrogenase B yes N/A 0.308 0.138 0.5 6e-08
P13743333 L-lactate dehydrogenase B N/A N/A 0.308 0.138 0.5 6e-08
Q9YGL2333 L-lactate dehydrogenase B N/A N/A 0.308 0.138 0.543 9e-08
Q9XT86334 L-lactate dehydrogenase B yes N/A 0.308 0.137 0.5 9e-08
>sp|Q95028|LDH_DROME L-lactate dehydrogenase OS=Drosophila melanogaster GN=ImpL3 PE=2 SV=1 Back     alignment and function desciption
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 67  GHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIS 112
           G HGI+++VFLSLPCV+  NGVT +V Q LT  E+E+L+KSA  +S
Sbjct: 279 GEHGIDKDVFLSLPCVLNANGVTSVVKQILTPTEVEQLQKSANIMS 324

Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 7
>sp|Q4R816|LDH6B_MACFA L-lactate dehydrogenase A-like 6B OS=Macaca fascicularis GN=LDHAL6B PE=2 SV=1 Back     alignment and function description
>sp|Q9PT42|LDHB_TRASC L-lactate dehydrogenase B chain OS=Trachemys scripta GN=LDHB PE=2 SV=3 Back     alignment and function description
>sp|Q98SK9|LDHB_PELSJ L-lactate dehydrogenase B chain OS=Pelodiscus sinensis japonicus GN=LDHB PE=2 SV=3 Back     alignment and function description
>sp|Q5E9B1|LDHB_BOVIN L-lactate dehydrogenase B chain OS=Bos taurus GN=LDHB PE=2 SV=4 Back     alignment and function description
>sp|P42119|LDHB_XENLA L-lactate dehydrogenase B chain OS=Xenopus laevis GN=ldhb PE=2 SV=2 Back     alignment and function description
>sp|P00337|LDHB_CHICK L-lactate dehydrogenase B chain OS=Gallus gallus GN=LDHB PE=1 SV=3 Back     alignment and function description
>sp|P13743|LDHB_ANAPL L-lactate dehydrogenase B chain OS=Anas platyrhynchos GN=LDHB PE=1 SV=2 Back     alignment and function description
>sp|Q9YGL2|LDHB_ANGRO L-lactate dehydrogenase B chain OS=Anguilla rostrata GN=ldhb PE=2 SV=3 Back     alignment and function description
>sp|Q9XT86|LDHB_MONDO L-lactate dehydrogenase B chain OS=Monodelphis domestica GN=LDHB PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query149
302772721 340 hypothetical protein SELMODRAFT_92401 [S 0.315 0.138 0.617 5e-09
302823291 321 hypothetical protein SELMODRAFT_236713 [ 0.315 0.146 0.617 5e-09
58385914 332 AGAP004880-PB [Anopheles gambiae str. PE 0.322 0.144 0.562 3e-08
32278599386 hypothetical protein SINV_10962 [Solenop 0.281 0.488 0.642 4e-08
170058421 331 l-lactate dehydrogenase [Culex quinquefa 0.315 0.141 0.574 5e-08
156255210 331 lactate dehydrogenase [Bombyx mori] gi|1 0.322 0.145 0.520 5e-08
170063026 331 l-lactate dehydrogenase [Culex quinquefa 0.315 0.141 0.574 5e-08
312381230 479 hypothetical protein AND_06519 [Anophele 0.315 0.098 0.553 5e-08
289740453 332 lactate dehydrogenase [Glossina morsitan 0.315 0.141 0.553 6e-08
307169552 332 L-lactate dehydrogenase [Camponotus flor 0.281 0.126 0.642 9e-08
>gi|302772721|ref|XP_002969778.1| hypothetical protein SELMODRAFT_92401 [Selaginella moellendorffii] gi|300162289|gb|EFJ28902.1| hypothetical protein SELMODRAFT_92401 [Selaginella moellendorffii] Back     alignment and taxonomy information
 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 38/47 (80%)

Query: 65  SEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
           ++G HGIE +VFLSLPCV+  NGV HIV Q LT+ E+ KLK+SAQ++
Sbjct: 285 AKGRHGIEHDVFLSLPCVLGRNGVLHIVEQTLTENEVLKLKESAQSL 331

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302823291|ref|XP_002993299.1| hypothetical protein SELMODRAFT_236713 [Selaginella moellendorffii] gi|300138872|gb|EFJ05624.1| hypothetical protein SELMODRAFT_236713 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|58385914|ref|XP_314306.2| AGAP004880-PB [Anopheles gambiae str. PEST] gi|158292996|ref|XP_001688555.1| AGAP004880-PC [Anopheles gambiae str. PEST] gi|158292998|ref|XP_001688556.1| AGAP004880-PA [Anopheles gambiae str. PEST] gi|55240259|gb|EAA09690.2| AGAP004880-PB [Anopheles gambiae str. PEST] gi|157016894|gb|EDO64032.1| AGAP004880-PC [Anopheles gambiae str. PEST] gi|157016895|gb|EDO64033.1| AGAP004880-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|322785993|gb|EFZ12609.1| hypothetical protein SINV_10962 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|170058421|ref|XP_001864915.1| l-lactate dehydrogenase [Culex quinquefasciatus] gi|167877547|gb|EDS40930.1| l-lactate dehydrogenase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|156255210|ref|NP_001095933.1| lactate dehydrogenase [Bombyx mori] gi|151933948|gb|ABS18410.1| lactate dehydrogenase [Bombyx mori] gi|164523643|gb|ABY60854.1| lactate dehydrogenase [Bombyx mori] Back     alignment and taxonomy information
>gi|170063026|ref|XP_001866924.1| l-lactate dehydrogenase [Culex quinquefasciatus] gi|167880810|gb|EDS44193.1| l-lactate dehydrogenase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|312381230|gb|EFR27023.1| hypothetical protein AND_06519 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|289740453|gb|ADD18974.1| lactate dehydrogenase [Glossina morsitans morsitans] Back     alignment and taxonomy information
>gi|307169552|gb|EFN62194.1| L-lactate dehydrogenase [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query149
FB|FBgn0001258332 ImpL3 "Ecdysone-inducible gene 0.630 0.283 0.432 1.7e-09
ZFIN|ZDB-GENE-991026-5333 ldha "lactate dehydrogenase A4 0.644 0.288 0.359 2.7e-08
UNIPROTKB|Q5E9B1334 LDHB "L-lactate dehydrogenase 0.308 0.137 0.521 2.7e-08
UNIPROTKB|J9NSR4328 J9NSR4 "L-lactate dehydrogenas 0.657 0.298 0.36 3.4e-08
UNIPROTKB|P00337333 LDHB "L-lactate dehydrogenase 0.308 0.138 0.5 3.5e-08
WB|WBGene00002262333 ldh-1 [Caenorhabditis elegans 0.308 0.138 0.5 4.5e-08
UNIPROTKB|J9P3N9334 J9P3N9 "L-lactate dehydrogenas 0.308 0.137 0.5 4.5e-08
UNIPROTKB|J9JHZ0330 J9JHZ0 "L-lactate dehydrogenas 0.308 0.139 0.5 5.7e-08
UNIPROTKB|E2R761334 LDHB "Uncharacterized protein" 0.308 0.137 0.5 5.8e-08
UNIPROTKB|P07195334 LDHB "L-lactate dehydrogenase 0.308 0.137 0.5 5.8e-08
FB|FBgn0001258 ImpL3 "Ecdysone-inducible gene L3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 144 (55.7 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 42/97 (43%), Positives = 56/97 (57%)

Query:    16 HKISVVFSAGNDIKFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEV 75
             HK  VV SA   IK    T     G  T ++   +L   S+V +   S   G HGI+++V
Sbjct:   231 HK-QVVDSAYEVIKLKGYT-SWAIGLSTASLASAILRNTSSVAAVSTSVL-GEHGIDKDV 287

Query:    76 FLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAIS 112
             FLSLPCV+  NGVT +V Q LT  E+E+L+KSA  +S
Sbjct:   288 FLSLPCVLNANGVTSVVKQILTPTEVEQLQKSANIMS 324
GO:0004459 "L-lactate dehydrogenase activity" evidence=ISS;NAS;TAS
GO:0006096 "glycolysis" evidence=IEA;NAS
GO:0005737 "cytoplasm" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
ZFIN|ZDB-GENE-991026-5 ldha "lactate dehydrogenase A4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9B1 LDHB "L-lactate dehydrogenase B chain" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9NSR4 J9NSR4 "L-lactate dehydrogenase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P00337 LDHB "L-lactate dehydrogenase B chain" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
WB|WBGene00002262 ldh-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|J9P3N9 J9P3N9 "L-lactate dehydrogenase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9JHZ0 J9JHZ0 "L-lactate dehydrogenase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2R761 LDHB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P07195 LDHB "L-lactate dehydrogenase B chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query149
cd05293312 cd05293, LDH_1, A subgroup of L-lactate dehydrogen 9e-18
PLN02602350 PLN02602, PLN02602, lactate dehydrogenase 2e-13
TIGR01771299 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase 5e-09
cd00650263 cd00650, LDH_MDH_like, NAD-dependent, lactate dehy 1e-08
cd05290307 cd05290, LDH_3, A subgroup of L-lactate dehydrogen 1e-08
cd05292308 cd05292, LDH_2, A subgroup of L-lactate dehydrogen 1e-08
cd00300300 cd00300, LDH_like, L-lactate dehydrogenase-like en 3e-08
cd01339300 cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik 4e-08
cd05291306 cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd 3e-06
COG0039313 COG0039, Mdh, Malate/lactate dehydrogenases [Energ 3e-06
PRK06223307 PRK06223, PRK06223, malate dehydrogenase; Reviewed 4e-06
PRK00066315 PRK00066, ldh, L-lactate dehydrogenase; Reviewed 8e-06
TIGR01763305 TIGR01763, MalateDH_bact, malate dehydrogenase, NA 1e-05
pfam02866173 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, 0.001
PTZ00082321 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi 0.002
>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases Back     alignment and domain information 
 Score = 77.3 bits (191), Expect = 9e-18
 Identities = 29/47 (61%), Positives = 40/47 (85%)

Query: 65  SEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
            +G HGIE+EVFLSLPC++ +NG+TH++ QPLT+EE EKL+KSA  +
Sbjct: 260 VKGLHGIEDEVFLSLPCILGENGITHVIKQPLTEEEQEKLQKSADTL 306

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312
>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase Back     alignment and domain information
>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase Back     alignment and domain information
>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family Back     alignment and domain information
>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes Back     alignment and domain information
>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins Back     alignment and domain information
>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases Back     alignment and domain information
>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent Back     alignment and domain information
>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain Back     alignment and domain information
>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 149
PF02866174 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta 99.93
COG0039313 Mdh Malate/lactate dehydrogenases [Energy producti 99.93
PTZ00082321 L-lactate dehydrogenase; Provisional 99.93
TIGR01763305 MalateDH_bact malate dehydrogenase, NAD-dependent. 99.92
cd05292308 LDH_2 A subgroup of L-lactate dehydrogenases. L-la 99.92
TIGR01771299 L-LDH-NAD L-lactate dehydrogenase. This model repr 99.92
PLN02602350 lactate dehydrogenase 99.92
TIGR01756313 LDH_protist lactate dehydrogenase. This model repr 99.92
PTZ00117319 malate dehydrogenase; Provisional 99.92
cd01336325 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli 99.92
PLN00135309 malate dehydrogenase 99.91
cd05291306 HicDH_like L-2-hydroxyisocapronate dehydrogenases 99.91
PTZ00325321 malate dehydrogenase; Provisional 99.91
cd01338322 MDH_choloroplast_like Chloroplast-like malate dehy 99.9
cd05290307 LDH_3 A subgroup of L-lactate dehydrogenases. L-la 99.9
TIGR01759323 MalateDH-SF1 malate dehydrogenase. This model repr 99.9
cd05293312 LDH_1 A subgroup of L-lactate dehydrogenases. L-la 99.9
cd00704323 MDH Malate dehydrogenase. Malate dehydrogenase (MD 99.9
TIGR01772312 MDH_euk_gproteo malate dehydrogenase, NAD-dependen 99.9
KOG1495|consensus332 99.9
PRK00066315 ldh L-lactate dehydrogenase; Reviewed 99.9
cd00300300 LDH_like L-lactate dehydrogenase-like enzymes. Mem 99.9
cd01339300 LDH-like_MDH L-lactate dehydrogenase-like malate d 99.89
PRK05442326 malate dehydrogenase; Provisional 99.89
PRK05086312 malate dehydrogenase; Provisional 99.88
cd05294309 LDH-like_MDH_nadp A lactate dehydrogenases-like st 99.88
TIGR01758324 MDH_euk_cyt malate dehydrogenase, NAD-dependent. T 99.88
cd01337310 MDH_glyoxysomal_mitochondrial Glyoxysomal and mito 99.87
PLN00106323 malate dehydrogenase 99.86
PRK06223307 malate dehydrogenase; Reviewed 99.85
TIGR01757387 Malate-DH_plant malate dehydrogenase, NADP-depende 99.85
PLN00112444 malate dehydrogenase (NADP); Provisional 99.84
cd05295452 MDH_like Malate dehydrogenase-like. These MDH-like 99.8
cd00650263 LDH_MDH_like NAD-dependent, lactate dehydrogenase- 99.68
KOG1494|consensus345 99.1
cd05298437 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; 98.69
KOG1496|consensus332 97.98
COG1486442 CelF Alpha-galactosidases/6-phospho-beta-glucosida 97.12
PRK15076431 alpha-galactosidase; Provisional 95.8
PF11975232 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-term 95.7
cd05297423 GH4_alpha_glucosidase_galactosidase Glycoside Hydr 95.59
cd05296419 GH4_P_beta_glucosidase Glycoside Hydrolases Family 95.51
cd05197425 GH4_glycoside_hydrolases Glycoside Hydrases Family 95.42
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] Back     alignment and domain information 
Probab=99.93  E-value=3.2e-26  Score=178.22  Aligned_cols=100  Identities=31%  Similarity=0.343  Sum_probs=94.7

Q ss_pred             hhhhccchhh-ccc-CcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccc-eEEEeeEEEcCCceeEEec-C
Q psy17699         19 SVVFSAGNDI-KFM-LNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEE-VFLSLPCVMADNGVTHIVN-Q   94 (149)
Q Consensus        19 ~~V~~ag~eI-~~K-G~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~d-V~lSvP~vIGr~GVe~vl~-l   94 (149)
                      +.|+++|++| ++| |+|+||||.++++|+++|+.|+  +.++|+|++++|+||++++ +|||+||+||++|++++++ +
T Consensus        69 ~~v~~~g~~ii~~k~g~t~~s~A~a~~~~v~ail~~~--~~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~  146 (174)
T PF02866_consen   69 ERVRKAGYEIIKAKGGSTSYSIAAAAARIVEAILKDE--RRILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDL  146 (174)
T ss_dssp             HHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHTTH--TEEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSB
T ss_pred             cccEeccceeeeeccccCcCCHHHHHHHHHHHHhhcc--cccccceeccccccCcccccceecceEEEcCCeeEEEeCCC
Confidence            4588999999 988 9999999999999999999997  8999999999999999833 9999999999999999999 9


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17699         95 PLTQEEIEKLKKSAQAISQDYMYFLT  120 (149)
Q Consensus        95 ~Ls~eEqe~L~~Sa~~Ik~~i~~~~~  120 (149)
                      +||++|+++|++|++.|++.+++.++
T Consensus       147 ~L~~~E~~~l~~sa~~l~~~i~~~~~  172 (174)
T PF02866_consen  147 PLSEEEQEKLKESAKELKKEIEKGLE  172 (174)
T ss_dssp             SSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998875

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PTZ00082 L-lactate dehydrogenase; Provisional Back     alignment and domain information
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent Back     alignment and domain information
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase Back     alignment and domain information
>PLN02602 lactate dehydrogenase Back     alignment and domain information
>TIGR01756 LDH_protist lactate dehydrogenase Back     alignment and domain information
>PTZ00117 malate dehydrogenase; Provisional Back     alignment and domain information
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases Back     alignment and domain information
>PLN00135 malate dehydrogenase Back     alignment and domain information
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases Back     alignment and domain information
>PTZ00325 malate dehydrogenase; Provisional Back     alignment and domain information
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases Back     alignment and domain information
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>TIGR01759 MalateDH-SF1 malate dehydrogenase Back     alignment and domain information
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>cd00704 MDH Malate dehydrogenase Back     alignment and domain information
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent Back     alignment and domain information
>KOG1495|consensus Back     alignment and domain information
>PRK00066 ldh L-lactate dehydrogenase; Reviewed Back     alignment and domain information
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes Back     alignment and domain information
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins Back     alignment and domain information
>PRK05442 malate dehydrogenase; Provisional Back     alignment and domain information
>PRK05086 malate dehydrogenase; Provisional Back     alignment and domain information
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity Back     alignment and domain information
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent Back     alignment and domain information
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases Back     alignment and domain information
>PLN00106 malate dehydrogenase Back     alignment and domain information
>PRK06223 malate dehydrogenase; Reviewed Back     alignment and domain information
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent Back     alignment and domain information
>PLN00112 malate dehydrogenase (NADP); Provisional Back     alignment and domain information
>cd05295 MDH_like Malate dehydrogenase-like Back     alignment and domain information
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family Back     alignment and domain information
>KOG1494|consensus Back     alignment and domain information
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases Back     alignment and domain information
>KOG1496|consensus Back     alignment and domain information
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK15076 alpha-galactosidase; Provisional Back     alignment and domain information
>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases Back     alignment and domain information
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases Back     alignment and domain information
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase Back     alignment and domain information
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query149
1t2f_A333 Human B Lactate Dehydrogenase Complexed With Nad+ A 1e-08
1i0z_A333 Human Heart L-Lactate Dehydrogenase H Chain, Ternar 1e-08
5ldh_A334 Structure Of The Active Ternary Complex Of Pig Hear 2e-08
2ldx_A331 Characterization Of The Antigenic Sites On The Refi 1e-07
2v65_A331 Apo Ldh From The Psychrophile C. Gunnari Length = 3 2e-07
4aj4_A332 Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be 2e-07
4aj1_A331 Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be 2e-07
3h3f_A331 Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi 2e-07
1i10_A331 Human Muscle L-Lactate Dehydrogenase M Chain, Terna 2e-07
4ajp_A337 Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl- 2e-07
1v6a_A332 Crystal Structure Of L-Lactate Dehydrogenase From C 5e-07
9ldt_A332 Design And Synthesis Of New Enzymes Based On The La 9e-07
2i6t_A303 Orthorhombic Structure Of The Ldh Domain Of Human U 4e-06
6ldh_A330 Refined Crystal Structure Of Dogfish M4 Apo-Lactate 7e-06
1ldm_A329 Refined Crystal Structure Of Dogfish M4 Apo-Lactate 7e-06
3ldh_A330 A Comparison Of The Structures Of Apo Dogfish M4 La 2e-04
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 333 Back     alignment and structure 
Iteration: 1

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 66  EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
           +G +GIE EVFLSLPC++   G+T ++NQ L  +E+ +LKKSA  +
Sbjct: 278 KGMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTL 323
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary Complex With Nadh And Oxamate Length = 333 Back     alignment and structure
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms Resolution Length = 334 Back     alignment and structure
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331 Back     alignment and structure
>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331 Back     alignment and structure
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332 Back     alignment and structure
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331 Back     alignment and structure
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331 Back     alignment and structure
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331 Back     alignment and structure
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337 Back     alignment and structure
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332 Back     alignment and structure
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332 Back     alignment and structure
>pdb|2I6T|A Chain A, Orthorhombic Structure Of The Ldh Domain Of Human Ubiquitin- Conjugating Enzyme E2-Like Isoform A Length = 303 Back     alignment and structure
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330 Back     alignment and structure
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329 Back     alignment and structure
>pdb|3LDH|A Chain A, A Comparison Of The Structures Of Apo Dogfish M4 Lactate Dehydrogenase And Its Ternary Complexes Length = 330 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query149
4aj2_A331 L-lactate dehydrogenase A chain; oxidoreductase-in 8e-15
2i6t_A303 Ubiquitin-conjugating enzyme E2-like isoform A; L- 3e-13
2xxj_A310 L-LDH, L-lactate dehydrogenase; oxidoreductase, hy 3e-12
1lld_A319 L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N 4e-12
1y6j_A318 L-lactate dehydrogenase; southeast collaboratory f 4e-12
1ldn_A316 L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA 4e-12
1a5z_A319 L-lactate dehydrogenase; oxidoreductase, glycolysi 8e-12
3d0o_A317 L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly 9e-12
2zqz_A326 L-LDH, L-lactate dehydrogenase; oxidoreductase, ro 9e-12
3pqe_A326 L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas 9e-12
1ez4_A318 Lactate dehydrogenase; rossmann fold, oxidoreducta 2e-11
3ldh_A330 Lactate dehydrogenase; oxidoreductase, CHOH donor, 2e-11
1o6z_A303 MDH, malate dehydrogenase; halophilic, ION-binding 4e-11
1hyh_A309 L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 1e-10
2v6b_A304 L-LDH, L-lactate dehydrogenase; oxidoreductase, ra 4e-10
1oju_A294 MDH, malate dehydrogenase; hyperthermophilic, oxid 1e-09
1guz_A310 Malate dehydrogenase; oxidoreductase, tricarboxyli 2e-09
3nep_X314 Malate dehydrogenase; halophIle, molecular adpatat 2e-08
2d4a_B308 Malate dehydrogenase; archaea, hyperthermophIle, o 4e-08
1ur5_A309 Malate dehydrogenase; oxidoreductase, tricarboxyli 6e-08
2ewd_A317 Lactate dehydrogenase,; protein-substrate_cofactor 6e-08
1pzg_A331 LDH, lactate dehydrogenase; apicomplexa, APAD, tet 8e-08
3gvi_A324 Malate dehydrogenase; NAD, oxidoreductase, tricarb 9e-08
1hye_A313 L-lactate/malate dehydrogenase; nucleotide binding 9e-08
3tl2_A315 Malate dehydrogenase; center for structural genomi 1e-07
2hjr_A328 Malate dehydrogenase; malaria, structural genomics 2e-07
1t2d_A322 LDH-P, L-lactate dehydrogenase; ternary complex, o 2e-07
3p7m_A321 Malate dehydrogenase; putative dehydrogenase, enzy 3e-07
1b8p_A329 Protein (malate dehydrogenase); oxidoreductase; 1. 6e-05
5mdh_A333 Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH 9e-05
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331 Back     alignment and structure
 Score = 68.7 bits (169), Expect = 8e-15
 Identities = 21/46 (45%), Positives = 34/46 (73%)

Query: 66  EGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
           +G +GI+E+VFLS+PC++  NG++ +V   LT +E  +LKKSA  +
Sbjct: 277 KGLYGIKEDVFLSVPCILGQNGISDVVKVTLTPDEEARLKKSADTL 322
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303 Back     alignment and structure
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310 Back     alignment and structure
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319 Back     alignment and structure
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318 Back     alignment and structure
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316 Back     alignment and structure
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319 Back     alignment and structure
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317 Back     alignment and structure
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326 Back     alignment and structure
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326 Back     alignment and structure
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318 Back     alignment and structure
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330 Back     alignment and structure
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303 Back     alignment and structure
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309 Back     alignment and structure
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304 Back     alignment and structure
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294 Back     alignment and structure
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310 Back     alignment and structure
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314 Back     alignment and structure
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308 Back     alignment and structure
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309 Back     alignment and structure
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317 Back     alignment and structure
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331 Back     alignment and structure
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324 Back     alignment and structure
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313 Back     alignment and structure
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315 Back     alignment and structure
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328 Back     alignment and structure
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322 Back     alignment and structure
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321 Back     alignment and structure
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329 Back     alignment and structure
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query149
2x0j_A294 Malate dehydrogenase; oxidoreductase, hyperthermop 99.93
3pqe_A326 L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas 99.92
3vku_A326 L-LDH, L-lactate dehydrogenase; rossmann fold, NAD 99.92
3tl2_A315 Malate dehydrogenase; center for structural genomi 99.92
3gvi_A324 Malate dehydrogenase; NAD, oxidoreductase, tricarb 99.92
1oju_A294 MDH, malate dehydrogenase; hyperthermophilic, oxid 99.92
3nep_X314 Malate dehydrogenase; halophIle, molecular adpatat 99.91
4aj2_A331 L-lactate dehydrogenase A chain; oxidoreductase-in 99.91
3p7m_A321 Malate dehydrogenase; putative dehydrogenase, enzy 99.91
3ldh_A330 Lactate dehydrogenase; oxidoreductase, CHOH donor, 99.89
1o6z_A303 MDH, malate dehydrogenase; halophilic, ION-binding 99.88
1ldn_A316 L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA 99.88
1ez4_A318 Lactate dehydrogenase; rossmann fold, oxidoreducta 99.88
1guz_A310 Malate dehydrogenase; oxidoreductase, tricarboxyli 99.88
2xxj_A310 L-LDH, L-lactate dehydrogenase; oxidoreductase, hy 99.87
2zqz_A326 L-LDH, L-lactate dehydrogenase; oxidoreductase, ro 99.87
1ur5_A309 Malate dehydrogenase; oxidoreductase, tricarboxyli 99.87
1hye_A313 L-lactate/malate dehydrogenase; nucleotide binding 99.87
2i6t_A303 Ubiquitin-conjugating enzyme E2-like isoform A; L- 99.87
2d4a_B308 Malate dehydrogenase; archaea, hyperthermophIle, o 99.87
3d0o_A317 L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly 99.87
1a5z_A319 L-lactate dehydrogenase; oxidoreductase, glycolysi 99.87
1y6j_A318 L-lactate dehydrogenase; southeast collaboratory f 99.87
1t2d_A322 LDH-P, L-lactate dehydrogenase; ternary complex, o 99.86
5mdh_A333 Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH 99.86
3hhp_A312 Malate dehydrogenase; MDH, citric acid cycle, TCA 99.86
1pzg_A331 LDH, lactate dehydrogenase; apicomplexa, APAD, tet 99.86
3fi9_A343 Malate dehydrogenase; structural genomics, oxidore 99.86
2hjr_A328 Malate dehydrogenase; malaria, structural genomics 99.86
2v6b_A304 L-LDH, L-lactate dehydrogenase; oxidoreductase, ra 99.85
1y7t_A327 Malate dehydrogenase; NAD-dependent-MDH-NADPH comp 99.85
2ewd_A317 Lactate dehydrogenase,; protein-substrate_cofactor 99.84
7mdh_A375 Protein (malate dehydrogenase); chloroplastic mala 99.84
1hyh_A309 L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 99.84
1b8p_A329 Protein (malate dehydrogenase); oxidoreductase; 1. 99.83
1mld_A314 Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D 99.82
1smk_A326 Malate dehydrogenase, glyoxysomal; tricarboxylic c 99.81
1lld_A319 L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N 99.69
4h7p_A345 Malate dehydrogenase; ssgcid, structural G seattle 99.69
1up7_A417 6-phospho-beta-glucosidase; hydrolase, family4 hyd 99.67
1s6y_A450 6-phospho-beta-glucosidase; hydrolase, structural 99.58
1u8x_X472 Maltose-6'-phosphate glucosidase; structural genom 99.55
3fef_A450 Putative glucosidase LPLD; gulosidase, structural 99.09
1obb_A480 Maltase, alpha-glucosidase; glycosidase, sulfinic 97.51
3u95_A477 Glycoside hydrolase, family 4; hydrolysis, cytosol 97.33
>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* Back     alignment and structure
Probab=99.93  E-value=2.4e-26  Score=192.79  Aligned_cols=97  Identities=25%  Similarity=0.290  Sum_probs=91.8

Q ss_pred             hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699         18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL   96 (149)
Q Consensus        18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L   96 (149)
                      .+.++++|+|| ++||+|+||||+++++|+++|++|+  ++++|||++++|+||++ |+|+|+||+||++|++ +++++|
T Consensus       195 ~~~~~~~g~eIi~~kGst~~a~a~a~~~~~~ail~d~--~~v~~~s~~l~g~yG~~-~v~~s~P~~lg~~Gve-i~~l~L  270 (294)
T 2x0j_A          195 ENDVRFVAAEVIKRKGATIFGPAVAIYRMVKAVVEDT--GEIIPTSMILQGEYGIE-NVAVGVPAKLGKNGAE-VADIKL  270 (294)
T ss_dssp             HHHHHTHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTC--CCEEEEEEEEESGGGCE-EEEEEEEEEEETTEEE-ECCCCC
T ss_pred             HHHHhhhheEEEecCcccchhHHHHHHHHHHHHHcCC--CcEEEEEEEEecCCCCc-cEEEEEEEEEeCCEEE-EeCCCC
Confidence            35689999999 9999999999999999999999996  89999999999999997 9999999999999995 889999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHH
Q psy17699         97 TQEEIEKLKKSAQAISQDYMYF  118 (149)
Q Consensus        97 s~eEqe~L~~Sa~~Ik~~i~~~  118 (149)
                      |++|+++|++|++.||++++++
T Consensus       271 ~~~E~~~l~~s~~~lk~~i~~l  292 (294)
T 2x0j_A          271 SDEEIEKLRNSAKILRERLEEL  292 (294)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999998864
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Back     alignment and structure
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* Back     alignment and structure
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Back     alignment and structure
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Back     alignment and structure
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* Back     alignment and structure
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Back     alignment and structure
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Back     alignment and structure
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Back     alignment and structure
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Back     alignment and structure
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Back     alignment and structure
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Back     alignment and structure
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Back     alignment and structure
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Back     alignment and structure
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Back     alignment and structure
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Back     alignment and structure
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Back     alignment and structure
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Back     alignment and structure
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Back     alignment and structure
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Back     alignment and structure
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Back     alignment and structure
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Back     alignment and structure
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Back     alignment and structure
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Back     alignment and structure
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Back     alignment and structure
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Back     alignment and structure
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Back     alignment and structure
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Back     alignment and structure
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Back     alignment and structure
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Back     alignment and structure
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Back     alignment and structure
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Back     alignment and structure
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Back     alignment and structure
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Back     alignment and structure
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Back     alignment and structure
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Back     alignment and structure
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Back     alignment and structure
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Back     alignment and structure
>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} Back     alignment and structure
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A Back     alignment and structure
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Back     alignment and structure
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Back     alignment and structure
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Back     alignment and structure
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Back     alignment and structure
>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 149
d1i0za2172 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human 7e-10
d2ldxa2172 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse 1e-09
d1ldma2169 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi 5e-08
d1ojua2152 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archa 8e-08
d1hyha2163 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy 1e-07
d1uxja2164 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro 1e-07
d1hyea2168 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd 1e-07
d5mdha2179 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S 2e-07
d1guza2163 d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro 3e-07
d1llca2172 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto 3e-07
d1ldna2168 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil 3e-07
d1llda2170 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid 5e-07
d1t2da2165 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar 5e-07
d1b8pa2171 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp 6e-07
d1y7ta2173 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu 6e-07
d1y6ja2169 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost 6e-07
d1a5za2172 d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm 1e-06
d1ez4a2171 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto 1e-06
d1o6za2161 d.162.1.1 (A:163-330) Malate dehydrogenase {Archae 4e-06
d7mdha2188 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu 6e-06
d1mlda2169 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S 2e-05
d1pzga2174 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop 2e-05
d2cmda2167 d.162.1.1 (A:146-312) Malate dehydrogenase {Escher 1e-04
>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 7e-10
 Identities = 23/58 (39%), Positives = 37/58 (63%)

Query: 54  DSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPLTQEEIEKLKKSAQAI 111
           + +      +  +G +GIE EVFLSLPC++   G+T ++NQ L  +E+ +LKKSA  +
Sbjct: 106 NLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTL 163
>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172 Back     information, alignment and structure
>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169 Back     information, alignment and structure
>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 152 Back     information, alignment and structure
>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163 Back     information, alignment and structure
>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164 Back     information, alignment and structure
>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168 Back     information, alignment and structure
>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179 Back     information, alignment and structure
>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163 Back     information, alignment and structure
>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172 Back     information, alignment and structure
>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168 Back     information, alignment and structure
>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170 Back     information, alignment and structure
>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165 Back     information, alignment and structure
>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171 Back     information, alignment and structure
>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173 Back     information, alignment and structure
>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169 Back     information, alignment and structure
>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172 Back     information, alignment and structure
>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171 Back     information, alignment and structure
>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161 Back     information, alignment and structure
>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188 Back     information, alignment and structure
>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169 Back     information, alignment and structure
>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174 Back     information, alignment and structure
>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query149
d1ojua2152 Lactate dehydrogenase {Archaeon Archaeoglobus fulg 99.96
d1uxja2164 Malate dehydrogenase {Chloroflexus aurantiacus [Ta 99.92
d1llda2170 Lactate dehydrogenase {Bifidobacterium longum, str 99.91
d1y6ja2169 Lactate dehydrogenase {Clostridium thermocellum [T 99.9
d1guza2163 Malate dehydrogenase {Chlorobium vibrioforme [TaxI 99.9
d1ez4a2171 Lactate dehydrogenase {Lactobacillus pentosus [Tax 99.89
d1i0za2172 Lactate dehydrogenase {Human (Homo sapiens), heart 99.89
d5mdha2179 Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 99.89
d1t2da2165 Lactate dehydrogenase {Malaria parasite (Plasmodiu 99.89
d1a5za2172 Lactate dehydrogenase {Thermotoga maritima [TaxId: 99.88
d1ldma2169 Lactate dehydrogenase {Dogfish (Squalus acanthias) 99.88
d1pzga2174 Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 99.88
d1hyea2168 MJ0490, lactate/malate dehydrogenase {Archaeon Met 99.88
d7mdha2188 Malate dehydrogenase {Sorghum (Sorghum vulgare), c 99.88
d1ldna2168 Lactate dehydrogenase {Bacillus stearothermophilus 99.87
d1llca2172 Lactate dehydrogenase {Lactobacillus casei [TaxId: 99.86
d2ldxa2172 Lactate dehydrogenase {Mouse (Mus musculus) [TaxId 99.85
d1y7ta2173 Malate dehydrogenase {Thermus thermophilus [TaxId: 99.85
d1hyha2163 L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La 99.84
d1o6za2161 Malate dehydrogenase {Archaeon Haloarcula marismor 99.84
d2cmda2167 Malate dehydrogenase {Escherichia coli [TaxId: 562 99.82
d1b8pa2171 Malate dehydrogenase {Aquaspirillum arcticum [TaxI 99.81
d1mlda2169 Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 99.78
d1up7a2253 6-phospho-beta-glucosidase {Thermotoga maritima [T 96.99
d1s6ya2270 6-phospho-beta-glucosidase {Bacillus stearothermop 96.93
d1u8xx2276 Maltose-6'-phosphate glucosidase GlvA {Bacillus su 96.41
d1obba2308 Alpha-glucosidase AglA {Thermotoga maritima [TaxId 95.77
d1vjta2278 Putative alpha-glucosidase TM0752 {Thermotoga mari 95.6
>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.96  E-value=2.3e-30  Score=198.25  Aligned_cols=97  Identities=25%  Similarity=0.290  Sum_probs=91.6

Q ss_pred             hhhhhccchhh-cccCcceeeHHHHHHHHHHhhhcCCCCCeEEEeeeeccCcCCCccceEEEeeEEEcCCceeEEecCCC
Q psy17699         18 ISVVFSAGNDI-KFMLNTIEGPRGGLTHNIQVPLLDFDSNVESCEKSKSEGHHGIEEEVFLSLPCVMADNGVTHIVNQPL   96 (149)
Q Consensus        18 ~~~V~~ag~eI-~~KG~T~ygiA~aia~IveaIL~D~de~~IlpvS~~l~G~YGi~~dV~lSvP~vIGr~GVe~vl~l~L   96 (149)
                      .+.+|++|++| ++||+|+||||.++++|+++|++|+  +.++|||++++|+||++ |+|+|+||+||++|++ +++++|
T Consensus        53 ~~~v~~~g~eIi~~kG~t~~gia~a~~~iv~aIl~d~--~~v~pvs~~l~geyG~~-dv~lsvP~vig~~Gve-i~~l~L  128 (152)
T d1ojua2          53 ENDVRFVAAEVIKRKGATIFGPAVAIYRMVKAVVEDT--GEIIPTSMILQGEYGIE-NVAVGVPAKLGKNGAE-VADIKL  128 (152)
T ss_dssp             HHHHHTTHHHHHHHHSSCCHHHHHHHHHHHHHHHTTC--CCEEEEEEEEESGGGCE-EEEEEEEEEEETTEEE-ECCCCC
T ss_pred             HHHHHHHHHHhhhhccceeccHHHHHHHHHHHHHhcC--CCceeeeEEeccccCCC-CEEEEeEEEECCCceE-EEcCCC
Confidence            35689999999 9999999999999999999999996  89999999999999997 9999999999999996 899999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHH
Q psy17699         97 TQEEIEKLKKSAQAISQDYMYF  118 (149)
Q Consensus        97 s~eEqe~L~~Sa~~Ik~~i~~~  118 (149)
                      |++|+++|++|++.||++++++
T Consensus       129 ~~~E~~~l~~Sa~~ik~~i~~l  150 (152)
T d1ojua2         129 SDEEIEKLRNSAKILRERLEEL  150 (152)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999998753
>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Back     information, alignment and structure
>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Back     information, alignment and structure
>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Back     information, alignment and structure
>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Back     information, alignment and structure
>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Back     information, alignment and structure
>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Back     information, alignment and structure
>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Back     information, alignment and structure
>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Back     information, alignment and structure
>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Back     information, alignment and structure
>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Back     information, alignment and structure
>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vjta2 d.162.1.2 (A:192-469) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure