Psyllid ID: psy176

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MDEKMENNLTWYTSLISISVVVGAVDFESVVYKFKPYLMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNYS
Secondary Structure (PSIPRED)
ccHHHHccEEEEEEEEEEEEEEEEEEccEEEEEEEcEEEcccEEEEEcccccEEEEEEEEEccccEEEEEccccccEEEEccccEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccEEEEEEEEEEEEEEEEcccEEEEEEcccEccccEEEcccccccEEEEEEEEcccccEEEEEccccccEEEEcHHcccccccccccccccccc
Coil and Loop (DISEMBL)
MDEKMENNLTWYTSLISISVVVGAVDFesvvykfkpylmenqkvwvpdpadgfvLGRILDLgmdevtvqpldskkpkaafsldrvytaeehdskdvddnys
Flexible Loop (DISEMBL)
MDEKMENNLTWYTSLISISVVVGAVDFESVVYKFKPYLMENQKVWVPDPADGFVLGRILDLGMDEVtvqpldskkpkaafsldrvytaeehdskdvddnys
Low Complexity Region (SEG)
MDEKMENNLTWYTSLISISVVVGAVDFESVVYKFKPYLMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNYS
Disordered region (IsUnstruct)
*******NLTWYTSLISISVVVGAVDFESVVYKFKPYLMENQKVWVPDPADGFVLGRILDLGMDEVTV*********************************
Disordered Region (DISOPRED)
******N*LTWYTSLISISVVVGAVDFESVVYKFKPYLMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSK***DNY*
Disordered Region (DISEMBL)
MDEKMENNLTWYTSLISISVVVGAVDFESVVYKFKPYLMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAE************
Disordered Region (DISPRO)
*DEKMENNLTWYTSLISISVVVGAVDFESVVYKFKPYLMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAE************
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDEKMENNLTWYTSLISISVVVGAVDFESVVYKFKPYLMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNYS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
Q9I8D1	1276	Unconventional myosin-VI	yes	N/A	0.623	0.049	0.453	4e-10
Q64331	1265	Unconventional myosin-VI	yes	N/A	0.623	0.049	0.453	7e-10
Q9UM54	1294	Unconventional myosin-VI	yes	N/A	0.623	0.048	0.453	1e-09
Q29122	1254	Unconventional myosin-VI	yes	N/A	0.623	0.050	0.453	2e-09
Q01989	1253	Myosin heavy chain 95F OS	yes	N/A	0.603	0.048	0.387	9e-06

>sp|Q9I8D1|MYO6_CHICK Unconventional myosin-VI OS=Gallus gallus GN=MYO6 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 39  MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
           ME+ K VW P P DGF +G I+D+G D +T++PL+ K      ++++V+ AEE   KDV+
Sbjct: 1   MEDGKPVWAPHPTDGFQMGMIVDIGTDYLTIEPLNQKGKTFQAAINQVFPAEEDSKKDVE 60

Query: 98  DNYS 101
           DN S
Sbjct: 61  DNCS 64

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Myosin 6 is a reverse-direction motor protein that moves towards the minus-end of actin filaments. Has slow rate of actin-activated ADP release due to weak ATP binding. Functions in a variety of intracellular processes such as vesicular membrane trafficking and cell migration. Required for the structural integrity of the Golgi apparatus via the p53-dependent pro-survival pathway. Appears to be involved in a very early step of clathrin-mediated endocytosis in polarized epithelial cells. May act as a regulator of F-actin dynamics. May play a role in transporting DAB2 from the plasma membrane to specific cellular targets.
Gallus gallus (taxid: 9031)

>sp|Q64331|MYO6_MOUSE Unconventional myosin-VI OS=Mus musculus GN=Myo6 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 39  MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
           ME+ K VW P P DGF +G I+D+G D +T++PL+ K       +++V+ AEE   KDV+
Sbjct: 1   MEDGKPVWAPHPTDGFQMGNIVDIGPDSLTIEPLNQKGKTFGALINQVFPAEEDSKKDVE 60

Query: 98  DNYS 101
           DN S
Sbjct: 61  DNCS 64

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Myosin 6 is a reverse-direction motor protein that moves towards the minus-end of actin filaments. Has slow rate of actin-activated ADP release due to weak ATP binding. Functions in a variety of intracellular processes such as vesicular membrane trafficking and cell migration. Required for the structural integrity of the Golgi apparatus via the p53-dependent pro-survival pathway. Appears to be involved in a very early step of clathrin-mediated endocytosis in polarized epithelial cells. May act as a regulator of F-actin dynamics. May play a role in transporting DAB2 from the plasma membrane to specific cellular targets. Required for structural integrity of inner ear hair cells.

Mus musculus (taxid: 10090)

>sp|Q9UM54|MYO6_HUMAN Unconventional myosin-VI OS=Homo sapiens GN=MYO6 PE=1 SV=4

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 39  MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
           ME+ K VW P P DGF +G I+D+G D +T++PL+ K       +++V+ AEE   KDV+
Sbjct: 1   MEDGKPVWAPHPTDGFQMGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVE 60

Query: 98  DNYS 101
           DN S
Sbjct: 61  DNCS 64

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Myosin 6 is a reverse-direction motor protein that moves towards the minus-end of actin filaments. Has slow rate of actin-activated ADP release due to weak ATP binding. Functions in a variety of intracellular processes such as vesicular membrane trafficking and cell migration. Required for the structural integrity of the Golgi apparatus via the p53-dependent pro-survival pathway. Appears to be involved in a very early step of clathrin-mediated endocytosis in polarized epithelial cells. May act as a regulator of F-actin dynamics. May play a role in transporting DAB2 from the plasma membrane to specific cellular targets. Required for structural integrity of inner ear hair cells.

Homo sapiens (taxid: 9606)

>sp|Q29122|MYO6_PIG Unconventional myosin-VI OS=Sus scrofa GN=MYO6 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 39  MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
           ME+ K VW P P DGF +G I+D+G D +T++PL+ K       +++V+ AEE   KDV+
Sbjct: 1   MEDGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVE 60

Query: 98  DNYS 101
           DN S
Sbjct: 61  DNCS 64

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Myosin 6 is a reverse-direction motor protein that moves towards the minus-end of actin filaments. Has slow rate of actin-activated ADP release due to weak ATP binding. Functions in a variety of intracellular processes such as vesicular membrane trafficking and cell migration. Required for the structural integrity of the Golgi apparatus via the p53-dependent pro-survival pathway. Appears to be involved in a very early step of clathrin-mediated endocytosis in polarized epithelial cells. May act as a regulator of F-actin dynamics. May play a role in transporting DAB2 from the plasma membrane to specific cellular targets. Required for structural integrity of inner ear hair cells.

Sus scrofa (taxid: 9823)

>sp|Q01989|MYS9_DROME Myosin heavy chain 95F OS=Drosophila melanogaster GN=jar PE=2 SV=4

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 38 LMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
          L + Q VWV D A+G++ GRI ++G  E  V P D K PK     D ++++ +   +D D
Sbjct: 2  LEDTQLVWVRDAAEGYIQGRITEIGAKEFEVTPTDRKYPKRTCHFDDIHSSCD-GPQDHD 60

Query: 98 DN 99
          DN
Sbjct: 61 DN 62

Myosin is a protein that binds to actin and has ATPase activity that is activated by actin. Together CLIP-190 and jar may coordinate the interaction between the actin and microtubule cytoskeleton. May link endocytic vesicles to microtubules and may be involved in transport in the early embryo and in the dynamic process of dorsal closure. It is believed that its function changes during the life cycle.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
242018255	1277	myosin heavy chain 95F, putative [Pedicu	0.603	0.047	0.606	6e-17
193632037	1234	PREDICTED: myosin heavy chain 95F isofor	0.594	0.048	0.606	3e-13
328714790	1230	PREDICTED: myosin heavy chain 95F isofor	0.594	0.048	0.606	3e-13
321458840	1271	hypothetical protein DAPPUDRAFT_228516 [	0.633	0.050	0.531	1e-11
47550961	1267	myosin VI [Strongylocentrotus purpuratus	0.603	0.048	0.580	3e-11
167517213	1224	hypothetical protein [Monosiga brevicoll	0.584	0.048	0.55	5e-10
443701212	1278	hypothetical protein CAPTEDRAFT_154601 [	0.613	0.048	0.483	6e-10
291223887	1263	PREDICTED: myosin VIb-like [Saccoglossus	0.584	0.046	0.533	1e-09
405959253	1246	Myosin-VI [Crassostrea gigas]	0.574	0.046	0.482	2e-09
67043515	936	myosin VI [Azumapecten farreri]	0.574	0.061	0.5	4e-09

>gi|242018255|ref|XP_002429594.1| myosin heavy chain 95F, putative [Pediculus humanus corporis] gi|212514561|gb|EEB16856.1| myosin heavy chain 95F, putative [Pediculus humanus corporis]

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/61 (60%), Positives = 51/61 (83%)

Query: 39 MENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDD 98
          ME+ +VW+PDP +GF+LG+++D+G+ EV V+PLD KK K   SLDR YTAE++D+KDVDD
Sbjct: 29 MESHRVWLPDPQEGFILGKVVDIGLGEVMVEPLDPKKKKVVCSLDRTYTAEDYDNKDVDD 88

Query: 99 N 99
          N
Sbjct: 89 N 89

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193632037|ref|XP_001946310.1| PREDICTED: myosin heavy chain 95F isoform 1 [Acyrthosiphon pisum]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/61 (60%), Positives = 45/61 (73%), Gaps = 1/61 (1%)

Query: 42  QKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEH-DSKDVDDNY 100
           Q VWVP+P +GF+L  I+DLGMDEVTVQP+ + K +    LDR+YTA  H D KDVDDN 
Sbjct: 7   QVVWVPEPKEGFILATIVDLGMDEVTVQPVGTSKAQFTLPLDRMYTANPHFDDKDVDDNC 66

Query: 101 S 101
           S
Sbjct: 67  S 67

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328714790|ref|XP_003245453.1| PREDICTED: myosin heavy chain 95F isoform 2 [Acyrthosiphon pisum]

 Score = 79.3 bits (194), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/61 (60%), Positives = 45/61 (73%), Gaps = 1/61 (1%)

Query: 42  QKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEH-DSKDVDDNY 100
           Q VWVP+P +GF+L  I+DLGMDEVTVQP+ + K +    LDR+YTA  H D KDVDDN 
Sbjct: 3   QVVWVPEPKEGFILATIVDLGMDEVTVQPVGTSKAQFTLPLDRMYTANPHFDDKDVDDNC 62

Query: 101 S 101
           S
Sbjct: 63  S 63

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321458840|gb|EFX69901.1| hypothetical protein DAPPUDRAFT_228516 [Daphnia pulex]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/64 (53%), Positives = 45/64 (70%)

Query: 38  LMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
           +M+NQKVWVPD   GF+LG+I+DLG + +TV P++    +     DRVY A E D+KDVD
Sbjct: 25  MMDNQKVWVPDVHRGFILGKIVDLGSEAITVLPIEQGLKEIRCPYDRVYPAGEDDNKDVD 84

Query: 98  DNYS 101
           DN S
Sbjct: 85  DNCS 88

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|47550961|ref|NP_999654.1| myosin VI [Strongylocentrotus purpuratus] gi|8099610|gb|AAF72176.1|AF248485_1 myosin VI [Strongylocentrotus purpuratus]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/62 (58%), Positives = 47/62 (75%), Gaps = 1/62 (1%)

Query: 40  ENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN 99
           EN+KVWVP    GF LGRI+D+G+D +TVQP+DS K  +A S DRV+ AE+ ++K VDDN
Sbjct: 4   ENRKVWVPHLEHGFQLGRIIDIGVDGITVQPVDSGKAVSA-SYDRVFPAEDDEAKVVDDN 62

Query: 100 YS 101
            S
Sbjct: 63  CS 64

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|167517213|ref|XP_001742947.1| hypothetical protein [Monosiga brevicollis MX1] gi|163778046|gb|EDQ91661.1| predicted protein [Monosiga brevicollis MX1]

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 40 ENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN 99
          + +KVW P+ A+GF+LG I D G D +TVQP+D  KP  A   D VY AEE D+KDV DN
Sbjct: 3  QGRKVWAPNVAEGFILGEISDFGADTLTVQPIDGGKPIDA-PYDAVYPAEEEDAKDVADN 61

Source: Monosiga brevicollis MX1

Species: Monosiga brevicollis

Genus: Monosiga

Family: Codonosigidae

Order: Choanoflagellida

Superkingdom: Eukaryota

>gi|443701212|gb|ELT99775.1| hypothetical protein CAPTEDRAFT_154601 [Capitella teleta]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 43/62 (69%)

Query: 40  ENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN 99
           E++KVWVP   +GF  G I+D+G D +TV+P D+     +   D+VY AEE+D+KDV+DN
Sbjct: 3   EDRKVWVPHATEGFKKGSIVDIGSDTITVEPFDTPGQTISAPYDKVYPAEEYDNKDVEDN 62

Query: 100 YS 101
            S
Sbjct: 63  CS 64

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|291223887|ref|XP_002731939.1| PREDICTED: myosin VIb-like [Saccoglossus kowalevskii]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 40 ENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN 99
          ENQKVW PDP DGF +G I+D+G + VTV+  ++KK   A   DRV+ AEE ++K V DN
Sbjct: 3  ENQKVWAPDPMDGFKMGTIVDIGSETVTVELFENKKQVTAL-YDRVFPAEEDENKSVADN 61

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|405959253|gb|EKC25309.1| Myosin-VI [Crassostrea gigas]

 Score = 67.0 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 39/58 (67%)

Query: 42 QKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN 99
          +KVWVP   DGF LGRI+D+G D + ++P D+         DR + AEE+D+KDV+DN
Sbjct: 5  KKVWVPHATDGFKLGRIVDIGSDSIAIEPFDAPGTTINAIYDRTFPAEEYDNKDVEDN 62

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|67043515|gb|AAY63881.1| myosin VI [Azumapecten farreri]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 39/58 (67%)

Query: 42 QKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN 99
          +KVWV   ADGF LGRI D+G D ++++P D+          RV+ AEE+D+KDVDDN
Sbjct: 5  KKVWVSHAADGFKLGRITDIGSDNISIEPFDAPGTTIHSVYGRVFPAEEYDNKDVDDN 62

Source: Azumapecten farreri

Species: Azumapecten farreri

Genus: Azumapecten

Family: Pectinidae

Order: Pectinoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
UNIPROTKB|F1NWK0	1253	MYO6 "Unconventional myosin-VI	0.623	0.050	0.453	1.8e-09
MGI|MGI:104785	1265	Myo6 "myosin VI" [Mus musculus	0.623	0.049	0.453	1.8e-09
UNIPROTKB|F1NWJ9	1276	MYO6 "Unconventional myosin-VI	0.623	0.049	0.453	1.8e-09
UNIPROTKB|Q9I8D1	1276	MYO6 "Unconventional myosin-VI	0.623	0.049	0.453	1.8e-09
UNIPROTKB|E2QUR8	1253	MYO6 "Uncharacterized protein"	0.623	0.050	0.453	2.3e-09
UNIPROTKB|D4A5I9	1262	Myo6 "Protein Myo6" [Rattus no	0.623	0.049	0.453	2.3e-09
UNIPROTKB|E7EW20	1286	MYO6 "Unconventional myosin-VI	0.623	0.048	0.453	2.4e-09
UNIPROTKB|Q9UM54	1294	MYO6 "Unconventional myosin-VI	0.623	0.048	0.453	2.4e-09
UNIPROTKB|F1RQI7	1253	MYO6 "Unconventional myosin-VI	0.623	0.050	0.453	3e-09
UNIPROTKB|Q29122	1254	MYO6 "Unconventional myosin-VI	0.623	0.050	0.453	3e-09

UNIPROTKB|F1NWK0 MYO6 "Unconventional myosin-VI" [Gallus gallus (taxid:9031)]

 Score = 152 (58.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 29/64 (45%), Positives = 43/64 (67%)

Query:    39 MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
             ME+ K VW P P DGF +G I+D+G D +T++PL+ K      ++++V+ AEE   KDV+
Sbjct:     1 MEDGKPVWAPHPTDGFQMGMIVDIGTDYLTIEPLNQKGKTFQAAINQVFPAEEDSKKDVE 60

Query:    98 DNYS 101
             DN S
Sbjct:    61 DNCS 64

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

MGI|MGI:104785 Myo6 "myosin VI" [Mus musculus (taxid:10090)]

 Score = 152 (58.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 29/64 (45%), Positives = 42/64 (65%)

Query:    39 MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
             ME+ K VW P P DGF +G I+D+G D +T++PL+ K       +++V+ AEE   KDV+
Sbjct:     1 MEDGKPVWAPHPTDGFQMGNIVDIGPDSLTIEPLNQKGKTFGALINQVFPAEEDSKKDVE 60

Query:    98 DNYS 101
             DN S
Sbjct:    61 DNCS 64

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001726 "ruffle" evidence=ISO

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005654 "nucleoplasm" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005886 "plasma membrane" evidence=IPI

GO:0005902 "microvillus" evidence=ISO

GO:0005905 "coated pit" evidence=IEA

GO:0006605 "protein targeting" evidence=IPI

GO:0006810 "transport" evidence=IEA

GO:0006897 "endocytosis" evidence=ISO;IMP

GO:0007268 "synaptic transmission" evidence=IMP

GO:0007416 "synapse assembly" evidence=IMP

GO:0007605 "sensory perception of sound" evidence=ISO;IMP

GO:0007626 "locomotory behavior" evidence=IMP

GO:0012506 "vesicle membrane" evidence=IPI

GO:0014047 "glutamate secretion" evidence=IMP

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISO

GO:0016358 "dendrite development" evidence=IMP

GO:0016459 "myosin complex" evidence=IEA

GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=ISO

GO:0030139 "endocytic vesicle" evidence=ISO

GO:0030330 "DNA damage response, signal transduction by p53 class mediator" evidence=ISO

GO:0030424 "axon" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0031941 "filamentous actin" evidence=ISO

GO:0031965 "nuclear membrane" evidence=ISO

GO:0032587 "ruffle membrane" evidence=ISO

GO:0042472 "inner ear morphogenesis" evidence=IMP

GO:0042491 "auditory receptor cell differentiation" evidence=IMP

GO:0042493 "response to drug" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045177 "apical part of cell" evidence=ISO

GO:0045202 "synapse" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0048167 "regulation of synaptic plasticity" evidence=IMP

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;IDA

GO:0048839 "inner ear development" evidence=IMP

GO:0051015 "actin filament binding" evidence=ISO

GO:0051046 "regulation of secretion" evidence=ISO

GO:0071257 "cellular response to electrical stimulus" evidence=IMP

UNIPROTKB|F1NWJ9 MYO6 "Unconventional myosin-VI" [Gallus gallus (taxid:9031)]

 Score = 152 (58.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 29/64 (45%), Positives = 43/64 (67%)

Query:    39 MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
             ME+ K VW P P DGF +G I+D+G D +T++PL+ K      ++++V+ AEE   KDV+
Sbjct:     1 MEDGKPVWAPHPTDGFQMGMIVDIGTDYLTIEPLNQKGKTFQAAINQVFPAEEDSKKDVE 60

Query:    98 DNYS 101
             DN S
Sbjct:    61 DNCS 64

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006605 "protein targeting" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0007416 "synapse assembly" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0012506 "vesicle membrane" evidence=IEA

GO:0014047 "glutamate secretion" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=IEA

GO:0030330 "DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0042491 "auditory receptor cell differentiation" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0045334 "clathrin-coated endocytic vesicle" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048167 "regulation of synaptic plasticity" evidence=IEA

GO:0051046 "regulation of secretion" evidence=IEA

GO:0071257 "cellular response to electrical stimulus" evidence=IEA

UNIPROTKB|Q9I8D1 MYO6 "Unconventional myosin-VI" [Gallus gallus (taxid:9031)]

 Score = 152 (58.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 29/64 (45%), Positives = 43/64 (67%)

Query:    39 MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
             ME+ K VW P P DGF +G I+D+G D +T++PL+ K      ++++V+ AEE   KDV+
Sbjct:     1 MEDGKPVWAPHPTDGFQMGMIVDIGTDYLTIEPLNQKGKTFQAAINQVFPAEEDSKKDVE 60

Query:    98 DNYS 101
             DN S
Sbjct:    61 DNCS 64

GO:0005524 "ATP binding" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0030175 "filopodium" evidence=IEA

GO:0030665 "clathrin-coated vesicle membrane" evidence=IEA

GO:0032587 "ruffle membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISS

GO:0005938 "cell cortex" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0006897 "endocytosis" evidence=ISS;IMP

GO:0030139 "endocytic vesicle" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0005905 "coated pit" evidence=IDA

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0001726 "ruffle" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005884 "actin filament" evidence=IDA

GO:0003779 "actin binding" evidence=IDA

GO:0060002 "plus-end directed microfilament motor activity" evidence=IDA

GO:0005634 "nucleus" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISS

GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=ISS

GO:0030330 "DNA damage response, signal transduction by p53 class mediator" evidence=ISS

GO:0031941 "filamentous actin" evidence=ISS

GO:0031965 "nuclear membrane" evidence=ISS

GO:0045334 "clathrin-coated endocytic vesicle" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0051015 "actin filament binding" evidence=ISS

GO:0051046 "regulation of secretion" evidence=ISS

GO:0003774 "motor activity" evidence=ISS

GO:0005516 "calmodulin binding" evidence=ISS

GO:0030048 "actin filament-based movement" evidence=ISS

GO:0043531 "ADP binding" evidence=ISS

UNIPROTKB|E2QUR8 MYO6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 151 (58.2 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 29/64 (45%), Positives = 42/64 (65%)

Query:    39 MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
             ME+ K VW P P DGF +G I+D+G D +T++PL+ K       +++V+ AEE   KDV+
Sbjct:     1 MEDGKPVWAPHPTDGFQMGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVE 60

Query:    98 DNYS 101
             DN S
Sbjct:    61 DNCS 64

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|D4A5I9 Myo6 "Protein Myo6" [Rattus norvegicus (taxid:10116)]

 Score = 151 (58.2 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 29/64 (45%), Positives = 42/64 (65%)

Query:    39 MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
             ME+ K VW P P DGF +G I+D+G D +T++PL+ K       +++V+ AEE   KDV+
Sbjct:     1 MEDGKPVWAPHPTDGFQMGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVE 60

Query:    98 DNYS 101
             DN S
Sbjct:    61 DNCS 64

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|E7EW20 MYO6 "Unconventional myosin-VI" [Homo sapiens (taxid:9606)]

 Score = 151 (58.2 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 29/64 (45%), Positives = 42/64 (65%)

Query:    39 MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
             ME+ K VW P P DGF +G I+D+G D +T++PL+ K       +++V+ AEE   KDV+
Sbjct:     1 MEDGKPVWAPHPTDGFQMGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVE 60

Query:    98 DNYS 101
             DN S
Sbjct:    61 DNCS 64

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|Q9UM54 MYO6 "Unconventional myosin-VI" [Homo sapiens (taxid:9606)]

 Score = 151 (58.2 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 29/64 (45%), Positives = 42/64 (65%)

Query:    39 MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
             ME+ K VW P P DGF +G I+D+G D +T++PL+ K       +++V+ AEE   KDV+
Sbjct:     1 MEDGKPVWAPHPTDGFQMGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVE 60

Query:    98 DNYS 101
             DN S
Sbjct:    61 DNCS 64

GO:0005524 "ATP binding" evidence=IEA

GO:0006605 "protein targeting" evidence=IEA

GO:0007416 "synapse assembly" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0014047 "glutamate secretion" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0042491 "auditory receptor cell differentiation" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0048167 "regulation of synaptic plasticity" evidence=IEA

GO:0071257 "cellular response to electrical stimulus" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0030665 "clathrin-coated vesicle membrane" evidence=IEA

GO:0032587 "ruffle membrane" evidence=IEA

GO:0016461 "unconventional myosin complex" evidence=TAS

GO:0003779 "actin binding" evidence=TAS

GO:0060001 "minus-end directed microfilament motor activity" evidence=NAS

GO:0030048 "actin filament-based movement" evidence=ISS;NAS

GO:0005938 "cell cortex" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0006897 "endocytosis" evidence=ISS;IMP

GO:0045334 "clathrin-coated endocytic vesicle" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=ISS;TAS

GO:0030330 "DNA damage response, signal transduction by p53 class mediator" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0001726 "ruffle" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0031965 "nuclear membrane" evidence=IDA

GO:0031941 "filamentous actin" evidence=ISS;IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS;IDA

GO:0051015 "actin filament binding" evidence=ISS;IDA

GO:0003774 "motor activity" evidence=ISS

GO:0030139 "endocytic vesicle" evidence=ISS

GO:0043531 "ADP binding" evidence=ISS

GO:0051046 "regulation of secretion" evidence=IMP

GO:0005654 "nucleoplasm" evidence=IDA

GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

UNIPROTKB|F1RQI7 MYO6 "Unconventional myosin-VI" [Sus scrofa (taxid:9823)]

 Score = 150 (57.9 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 29/64 (45%), Positives = 42/64 (65%)

Query:    39 MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
             ME+ K VW P P DGF +G I+D+G D +T++PL+ K       +++V+ AEE   KDV+
Sbjct:     1 MEDGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVE 60

Query:    98 DNYS 101
             DN S
Sbjct:    61 DNCS 64

GO:0071257 "cellular response to electrical stimulus" evidence=IEA

GO:0051046 "regulation of secretion" evidence=IEA

GO:0048167 "regulation of synaptic plasticity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045334 "clathrin-coated endocytic vesicle" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0042491 "auditory receptor cell differentiation" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030330 "DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0014047 "glutamate secretion" evidence=IEA

GO:0012506 "vesicle membrane" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0007416 "synapse assembly" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0006605 "protein targeting" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|Q29122 MYO6 "Unconventional myosin-VI" [Sus scrofa (taxid:9823)]

 Score = 150 (57.9 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 29/64 (45%), Positives = 42/64 (65%)

Query:    39 MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
             ME+ K VW P P DGF +G I+D+G D +T++PL+ K       +++V+ AEE   KDV+
Sbjct:     1 MEDGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVE 60

Query:    98 DNYS 101
             DN S
Sbjct:    61 DNCS 64

GO:0045334 "clathrin-coated endocytic vesicle" evidence=ISS

GO:0051046 "regulation of secretion" evidence=ISS

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISS

GO:0005938 "cell cortex" evidence=IDA

GO:0005516 "calmodulin binding" evidence=NAS;IPI

GO:0043531 "ADP binding" evidence=IDA

GO:0051015 "actin filament binding" evidence=IC;IDA

GO:0031941 "filamentous actin" evidence=IMP;IDA

GO:0030048 "actin filament-based movement" evidence=IDA

GO:0003774 "motor activity" evidence=IDA

GO:0006897 "endocytosis" evidence=IMP

GO:0005905 "coated pit" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IMP

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0031965 "nuclear membrane" evidence=ISS

GO:0030330 "DNA damage response, signal transduction by p53 class mediator" evidence=ISS

GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0005654 "nucleoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0001726 "ruffle" evidence=ISS

GO:0016459 "myosin complex" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	101
pfam02736	42	pfam02736, Myosin_N, Myosin N-terminal SH3-like do	4e-06

>gnl|CDD|111612 pfam02736, Myosin_N, Myosin N-terminal SH3-like domain

 Score = 39.8 bits (94), Expect = 4e-06
 Identities = 17/32 (53%), Positives = 20/32 (62%)

Query: 44 VWVPDPADGFVLGRILDLGMDEVTVQPLDSKK 75
          VWVPDP +GFV G I     D+VTV+  D K 
Sbjct: 4  VWVPDPKEGFVKGEIKSREGDKVTVKTEDGKT 35

This domain has an SH3-like fold. It is found at the N-terminus of many but not all myosins. The function of this domain is unknown. Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
KOG0163|consensus	1259		99.83
PF02736	42	Myosin_N: Myosin N-terminal SH3-like domain; Inter	99.35
PTZ00014	821	myosin-A; Provisional	97.76
KOG0161|consensus	1930		97.06
PF09378	91	HAS-barrel: HAS barrel domain; InterPro: IPR018538	83.87
PF08141	58	SspH: Small acid-soluble spore protein H family; I	81.81

>KOG0163|consensus

Probab=99.83  E-value=2.8e-21  Score=173.82  Aligned_cols=64  Identities=41%  Similarity=0.741  Sum_probs=62.8

Q ss_pred             ccCCcEEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCcCCCCCCcCCCCC
Q psy176           38 LMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNYS  101 (101)
Q Consensus        38 md~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAeED~~KDVDDNCs  101 (101)
                      |++||+||+||++|||++|||+|||.+++|+.|+|.++++++|.|+||+|+|||..|||||||+
T Consensus         1 ~e~gr~VWi~d~tdGf~~~rI~di~~~~ftl~~~d~k~~t~~~~~edv~a~eeD~~k~veDNC~   64 (1259)
T KOG0163|consen    1 LEDGRLVWIRDATDGFIAGRITDIGAKGFTLTPLDRKGPTVTRHFEDVHACEEDSPKDVEDNCE   64 (1259)
T ss_pred             CCCCceEeecccccchhheeeeeecCCceEEeecccCCcceeehhhhccccccccccccccccc
Confidence            6899999999999999999999999999999999999999999999999999999999999996

>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold

Probab=99.35  E-value=2.2e-12  Score=77.11  Aligned_cols=42  Identities=40%  Similarity=0.696  Sum_probs=38.2

Q ss_pred             CcEEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCc
Q psy176           41 NQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDR   84 (101)
Q Consensus        41 gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~ydd   84 (101)
                      ++.||+|||++||++|+|+++.++.+||++.+  +++++++.||
T Consensus         1 K~~vWvpD~~egfv~g~I~~~~g~~vtV~~~~--G~~~tv~~dd   42 (42)
T PF02736_consen    1 KKWVWVPDPKEGFVKGEIIEEEGDKVTVKTED--GKEVTVKKDD   42 (42)
T ss_dssp             TTEEEEEESSSSEEEEEEEEEESSEEEEEETT--TEEEEEEGGG
T ss_pred             CCEEEEeCCcccEEEEEEEEEcCCEEEEEECC--CCEEEeCCCC
Confidence            47899999999999999999999999999997  5788888775

It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....

>PTZ00014 myosin-A; Provisional

Probab=97.76  E-value=4.4e-05  Score=68.52  Aligned_cols=62  Identities=16%  Similarity=0.215  Sum_probs=52.6

Q ss_pred             CCcEEEe-------cCCCCCeEEEEEE-EccCCeEEEEEcC-CCCCeEEecCCceecCcCCC-CCCcCCCCC
Q psy176           40 ENQKVWV-------PDPADGFVLGRIL-DLGMDEVTVQPLD-SKKPKAAFSLDRVYTAEEHD-SKDVDDNYS  101 (101)
Q Consensus        40 ~gq~VWa-------pDp~eGFiLgrIv-DIG~d~~TVqPld-~k~~~~~~~yddVFPAeED~-~KDVDDNCs  101 (101)
                      .|-.||.       +||++||++|+|+ +...+.++|+.++ .++++++++.+++|++.... ...+||.|.
T Consensus        32 ~g~~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~n~~~~~~~~~Dl~~  103 (821)
T PTZ00014         32 KGFYVWTDKAPAVKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTFEVKPEHAFNANSQIDPMTYGDIGL  103 (821)
T ss_pred             cCCeEEeeCCCCCCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEEEeeHHHhhhcCCCCCcCCcchhhh
Confidence            5788997       7899999999999 9999999999875 46899999999999998742 235788773

>KOG0161|consensus

Probab=97.06  E-value=0.0008  Score=65.70  Aligned_cols=63  Identities=27%  Similarity=0.374  Sum_probs=50.4

Q ss_pred             ccccCCcEEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCcCCCCCCcCCC
Q psy176           36 PYLMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN   99 (101)
Q Consensus        36 ~~md~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAeED~~KDVDDN   99 (101)
                      +|.+..+.||+||+++||+.|.|..=..++++|.-.++ +......=++|+|...---..|||=
T Consensus        25 ~~~d~kk~vWvpd~~e~fv~~~i~~~~~~~v~v~~~~~-~~~~~v~~~~v~~~NPPkfdk~eDM   87 (1930)
T KOG0161|consen   25 RPFDSKKWVWVPDPKEGFVKAEIKSEEGEKVTVETEEG-GTLTQVKEDDVQKMNPPKFDKVEDM   87 (1930)
T ss_pred             cchhhcceeeecCCCCCeeeeeeeccCCCceEEEEcCC-ceeEEecHHHcCcCCCCCccccccH
Confidence            78899999999999999999999988777899986655 3444488999999986433355553

>PF09378 HAS-barrel: HAS barrel domain; InterPro: IPR018538 The HAS barrel is named after HerA-ATP Synthase

Probab=83.87  E-value=2.5  Score=26.73  Aligned_cols=47  Identities=17%  Similarity=0.232  Sum_probs=29.0

Q ss_pred             EEEEEeeeecceeeeeeec--cccCCcEEEecCCCCCeEEEEEEEccCC
Q psy176           18 ISVVVGAVDFESVVYKFKP--YLMENQKVWVPDPADGFVLGRILDLGMD   64 (101)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~--~md~gq~VWapDp~eGFiLgrIvDIG~d   64 (101)
                      |..|+|...-....+...+  ++.-|.-|=+++...+.+||+|++|...
T Consensus         1 IG~ViG~~s~~~~~f~~~~~~~v~~GeyV~i~~~~~~~vlG~V~~i~~~   49 (91)
T PF09378_consen    1 IGYVIGETSSNEFEFIVEPSKDVRVGEYVVIEYDDGEKVLGMVTSISRG   49 (91)
T ss_dssp             -----EEEEEETTEEEEEE-TT-BTTEEEEES----TTEEEEEEEEES-
T ss_pred             CCcccCceeEeeEEEEEeCCCCCCcCeEEEEEEechhhhhhhhheeEEc
Confidence            4566776665555555566  7888999999999999999999999984

In ATP synthases, this domain is implicated in the assembly of the catalytic toroid and docking of accessory subunits, such as the subunit of the ATP synthase complex. Similar roles in docking of the functional partner, the NurA nuclease, and assembly of the HerA toroid complex appear likely for the HAS-barrel of the HerA family []. ; PDB: 3OAA_I.

>PF08141 SspH: Small acid-soluble spore protein H family; InterPro: IPR012610 This family consists of the small acid-soluble spore proteins (SASP) of the H type (sspH)

Probab=81.81  E-value=2.6  Score=27.32  Aligned_cols=35  Identities=17%  Similarity=0.424  Sum_probs=24.4

Q ss_pred             CCcEEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCc
Q psy176           40 ENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDR   84 (101)
Q Consensus        40 ~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~ydd   84 (101)
                      .|++||+-+-.+          ..++.+|.|+++..+...+|..+
T Consensus        21 ~G~pV~Ie~vde----------~~~tA~V~~l~~p~~~~~Vpv~~   55 (58)
T PF08141_consen   21 NGVPVWIEHVDE----------ENGTARVHPLDNPEEEQEVPVND   55 (58)
T ss_pred             CCEEEEEEEEcC----------CCCeEEEEECCCCCcEEEEEHHH
Confidence            589999988655          45666677776666666666544

SspH are unique to spores of Bacillus subtilis and are expressed only in the forespore compartment during sporulation of this organism. The sspH genes are monocistronic and are recognised by the forespore-specific sigma factor for RNA polymerase - sigma-G. The specific role of this protein is unclear but is thought to play a role in sporulation under conditions different from that of the common laboratory tests of spore properties [].; GO: 0030436 asexual sporulation, 0042601 endospore-forming forespore

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	101
2bki_A	858	Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St		1e-10
2x51_A	789	M6 Delta Insert1 Length = 789		1e-10
4anj_A	1052	Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St		2e-10
4dbq_A	788	Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos		2e-10
4dbp_A	814	Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal		2e-10
2bkh_A	814	Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc		2e-10
2vas_A	788	Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo		2e-10
3l9i_A	814	Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant		2e-10
4dbr_A	786	Myosin Vi D179y (md) Pre-powerstroke State Length =		3e-10
2v26_A	784	Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L		3e-10
4e7z_A	798	Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F		3e-10
4e7s_A	798	Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat		6e-09

>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 39  MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
           ME+ K VW P P DGF +G I+D+G D +T++PL+ K       +++V+ AEE   KDV+
Sbjct: 1   MEDGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVE 60
Query: 98  DNYS 101
           DN S
Sbjct: 61  DNCS 64

>pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 39  MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
           ME+ K VW P P DGF +G I+D+G D +T++PL+ K       +++V+ AEE   KDV+
Sbjct: 1   MEDGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVE 60
Query: 98  DNYS 101
           DN S
Sbjct: 61  DNCS 64

>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 39  MENQK-VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVD 97
           ME+ K VW P P DGF +G I+D+G D +T++PL+ K       +++V+ AEE   KDV+
Sbjct: 1   MEDGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVE 60
Query: 98  DNYS 101
           DN S
Sbjct: 61  DNCS 64

>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 40  ENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN 99
           + + VW P P DGF +G I+D+G D +T++PL+ K       +++V+ AEE   KDV+DN
Sbjct: 2   DGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDN 61
Query: 100 YS 101
            S
Sbjct: 62  CS 63

>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 40  ENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN 99
           + + VW P P DGF +G I+D+G D +T++PL+ K       +++V+ AEE   KDV+DN
Sbjct: 2   DGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDN 61
Query: 100 YS 101
            S
Sbjct: 62  CS 63

>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 40  ENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN 99
           + + VW P P DGF +G I+D+G D +T++PL+ K       +++V+ AEE   KDV+DN
Sbjct: 2   DGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDN 61
Query: 100 YS 101
            S
Sbjct: 62  CS 63

>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 40  ENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN 99
           + + VW P P DGF +G I+D+G D +T++PL+ K       +++V+ AEE   KDV+DN
Sbjct: 2   DGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDN 61
Query: 100 YS 101
            S
Sbjct: 62  CS 63

>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 40  ENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN 99
           + + VW P P DGF +G I+D+G D +T++PL+ K       +++V+ AEE   KDV+DN
Sbjct: 2   DGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDN 61
Query: 100 YS 101
            S
Sbjct: 62  CS 63

>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 42  QKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNYS 101
           + VW P P DGF +G I+D+G D +T++PL+ K       +++V+ AEE   KDV+DN S
Sbjct: 2   KPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCS 61

>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 42  QKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNYS 101
           + VW P P DGF +G I+D+G D +T++PL+ K       +++V+ AEE   KDV+DN S
Sbjct: 1   KPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCS 60

>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 44  VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNYS 101
           VW P P DGF +G I+D+G D +T++PL+ K       +++V+ AEE   KDV+DN S
Sbjct: 16  VWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCS 73

>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 44  VWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNYS 101
           VW P P DGF +G I+  G D +T++PL+ K       +++V+ AEE   KDV+DN S
Sbjct: 16  VWAPHPTDGFQVGNIVRRGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCS 73

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	101
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	4e-12
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	2e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-10
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	4e-07
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-07
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	2e-05
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	5e-05

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784

 Score = 59.6 bits (145), Expect = 4e-12
 Identities = 25/58 (43%), Positives = 38/58 (65%)

Query: 42 QKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN 99
          + VW P P DGF +G I+D+G D +T++PL+ K       +++V+ AEE   KDV+DN
Sbjct: 1  KPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDN 58

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 40 ENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN 99
            + VWVP    GF    + D G +E  V+  +S +       D++           +D 
Sbjct: 7  ARRLVWVPSELHGFEAAALRDEGEEEAEVELAESGRRL-RLPRDQIQRMNPPKFSKAEDM 65

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.5 bits (131), Expect = 3e-10
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 43 KVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDN 99
           VWVP    GF    I +   DEVTV+  ++ K K   S D +          V+D 
Sbjct: 33 LVWVPSEKHGFEAASIKEEKGDEVTVELQENGK-KVTLSKDDIQKMNPPKFSKVEDM 88

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837

 Score = 45.4 bits (108), Expect = 4e-07
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 40 ENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDD 98
            +  WVPD  +GF    I     DE+TV+ +     +     D + +      + ++D
Sbjct: 30 GKKNCWVPDEKEGFASAEIQSSKGDEITVKIVADSSTR-TVKKDDIQSMNPPKFEKLED 87

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 45.4 bits (108), Expect = 4e-07
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 34 FKPYLMENQKVWV---PDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEE 90
          FK  + + + +W    PD  D +  G I+    D  T + +D +  +     D       
Sbjct: 25 FKLTVSDKRYIWYNPDPDERDSYECGEIVSETSDSFTFKTVDGQDRQ--VKKDDANQRNP 82

Query: 91 HDSKDVDDN 99
               V+D 
Sbjct: 83 IKFDGVEDM 91

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 43 KVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDD 98
           V+VPD    FV  +I+     +VT +    K        D+V          ++D
Sbjct: 36 DVFVPDDKQEFVKAKIVSREGGKVTAETEYGKTVT--VKEDQVMQQNPPKFDKIED 89

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770

 Score = 39.5 bits (93), Expect = 5e-05
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 34 FKPYLMENQKVWV---PDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEE 90
          FK  + + + +W    P   D +  G I+    D  T + +D +  +     D       
Sbjct: 25 FKLTVSDKRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQ--VKKDDANQRNP 82

Query: 91 HDSKDVDD 98
               V+D
Sbjct: 83 IKFDGVED 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	99.1
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	98.91
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	98.66
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.58
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	98.52
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	98.43
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	98.15
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	98.13
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	97.64
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	97.31
2qqr_A	118	JMJC domain-containing histone demethylation prote	90.61
3h8z_A	128	FragIle X mental retardation syndrome-related Pro;	85.81
2xk0_A	69	Polycomb protein PCL; transcription, aromatic CAGE	82.75

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=99.10  E-value=7e-11  Score=105.59  Aligned_cols=64  Identities=41%  Similarity=0.798  Sum_probs=54.7

Q ss_pred             ccCCcEEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCcCCCCCCcCCCCC
Q psy176           38 LMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNYS  101 (101)
Q Consensus        38 md~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAeED~~KDVDDNCs  101 (101)
                      |++|.+||+|||++||++|+|++.+.++++|++++.+++.++++.++++|+..+...+|||.|+
T Consensus         1 me~G~~VWv~d~~~~~~~a~v~~~~~~~~~v~~~~~~g~~~~~~~~~v~~~n~~~~~~veDl~~   64 (1052)
T 4anj_A            1 MEDGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCS   64 (1052)
T ss_dssp             ---CCCEEEEETTTEEEEEEEEEECSSEEEEEEC----CCEEEEGGGCEECCSCSSCCCSBGGG
T ss_pred             CCCCCEEEEEcCCCCEEEEEEEEEcCCcEEEEEeCCCCcEEEecHHHcCCCCCCccCCCccccc
Confidence            7899999999999999999999999999999999988999999999999999988889999874

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*

Probab=98.91  E-value=9.6e-10  Score=95.45  Aligned_cols=60  Identities=43%  Similarity=0.830  Sum_probs=52.7

Q ss_pred             cEEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCcCCCCCCcCCCCC
Q psy176           42 QKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNYS  101 (101)
Q Consensus        42 q~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAeED~~KDVDDNCs  101 (101)
                      ++||+|||++||++|+|++++++.++|++++.++++++++.++++|+.++....+||.|.
T Consensus         1 ~~vWv~~~~~~~~~~~v~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~Dl~~   60 (784)
T 2v26_A            1 KPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCS   60 (784)
T ss_dssp             CCEEEEETTTEEEEEEEEEECSSEEEEEC----CCCEEEEGGGCEECCSCSSCCCSBGGG
T ss_pred             CeEEEEcCCCcEEEEEEEEecCCeEEEEEECCCCCEEEEehhhccccccccccccchhhh
Confidence            579999999999999999999999999998777899999999999999888889999874

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*

Probab=98.66  E-value=2.6e-08  Score=86.86  Aligned_cols=63  Identities=19%  Similarity=0.224  Sum_probs=56.3

Q ss_pred             ccccCCcEEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCcCCCCCCcCCCC
Q psy176           36 PYLMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNY  100 (101)
Q Consensus        36 ~~md~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAeED~~KDVDDNC  100 (101)
                      +|++.+++||+|||++||+.|+|++..++.++|+.-  .+++++++.++|+|+.......+||-|
T Consensus        29 ~~~~~~~~vWv~d~~~~~~~~~v~~~~~~~~~v~~~--~g~~~~v~~~~v~~~np~~~~~~eDl~   91 (783)
T 4db1_A           29 RPFDLKKDVFVPDDKQEFVKAKIVSREGGKVTAETE--YGKTVTVKEDQVMQQNPPKFDKIEDMA   91 (783)
T ss_dssp             SCCCTTTEEEEECSSSSEEEEEEEEECSSEEEEEET--TTEEEEEEGGGCEECCCGGGTTCSBGG
T ss_pred             cCCcCCCEEEEECCCCCEEEEEEEEecCCEEEEEEC--CCCEEeCCHHHcccCCCCccCCcchhh
Confidence            578999999999999999999999999999999843  468899999999999887667888876

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.58  E-value=8.6e-08  Score=84.66  Aligned_cols=64  Identities=27%  Similarity=0.338  Sum_probs=56.5

Q ss_pred             cccCCcEEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCcCCCCCCcCCCCC
Q psy176           37 YLMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNYS  101 (101)
Q Consensus        37 ~md~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAeED~~KDVDDNCs  101 (101)
                      |++.+..||+|||.+||+.|+|++..++.++|+..+. ++.++++.++++|+....-..+||.|.
T Consensus        27 ~~~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~n~~~~~~~~Dl~~   90 (1184)
T 1i84_S           27 DWSAKKLVWVPSEKHGFEAASIKEEKGDEVTVELQEN-GKKVTLSKDDIQKMNPPKFSKVEDMAE   90 (1184)
T ss_dssp             HTTCTTEEEECCTTTSSEEEEEEEEETTEEEEEETTT-CCEEEEETTSCEECCCGGGTTCSBTTS
T ss_pred             CcccCCeEEEECCCCCeEEEEEEEecCCeEEEEEcCC-CcEEEeeHHHccCCCCccccccchhhh
Confidence            6788999999999999999999999999999997655 789999999999998754457888874

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=98.52  E-value=1.1e-07  Score=83.22  Aligned_cols=64  Identities=20%  Similarity=0.349  Sum_probs=56.8

Q ss_pred             ccccCCcEEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCcCCCCCCcCCCC
Q psy176           36 PYLMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNY  100 (101)
Q Consensus        36 ~~md~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAeED~~KDVDDNC  100 (101)
                      .|++.+..||+|||++||+.|+|++..++.++|+..+. +++++++.++++|+....-..+||.|
T Consensus        26 ~~~~~~~~vWv~~~~~~~~~~~v~~~~~~~~~v~~~~~-g~~~~v~~~~~~~~np~~~~~~~Dl~   89 (837)
T 1kk8_A           26 AAFDGKKNCWVPDEKEGFASAEIQSSKGDEITVKIVAD-SSTRTVKKDDIQSMNPPKFEKLEDMA   89 (837)
T ss_dssp             CCCCTTTEEEEEETTTEEEEEEEEEEETTEEEEEETTT-CCEEEEEGGGCEECCCGGGTTCSBGG
T ss_pred             cccccCCEEEEECCCCCeeEEEEEeecCCeEEEEEcCC-CceEEeeHHHccccCchhhcchhhhh
Confidence            47899999999999999999999999999999997654 78999999999999875556788876

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*

Probab=98.43  E-value=2.2e-07  Score=82.24  Aligned_cols=63  Identities=21%  Similarity=0.321  Sum_probs=55.9

Q ss_pred             cccCCcEEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCcCCCCCCcCCCC
Q psy176           37 YLMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNY  100 (101)
Q Consensus        37 ~md~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAeED~~KDVDDNC  100 (101)
                      |++.+..||+|||++||+.|+|++..++.++|+..++ ++.++++.++++|+....-..+||.|
T Consensus         4 ~~~~~~~vwv~~~~~~~~~~~v~~~~~~~~~v~~~~~-~~~~~v~~~~~~~~np~~~~~~~Dl~   66 (995)
T 2ycu_A            4 EWTARRLVWVPSELHGFEAAALRDEGEEEAEVELAES-GRRLRLPRDQIQRMNPPKFSKAEDMA   66 (995)
T ss_dssp             CCGGGCEEEEEETTTEEEEEEEEEECSSEEEEEETTT-CCEEEEEGGGCEECCCGGGTTCSBGG
T ss_pred             cccCCCeEEEECCCCceEEEEEEEecCCeEEEEECCC-CeEEEeeHHHcccCCCccccccchhh
Confidence            7788999999999999999999999999999998765 67889999999999875556788876

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1

Probab=98.15  E-value=2.3e-06  Score=76.04  Aligned_cols=62  Identities=19%  Similarity=0.331  Sum_probs=54.9

Q ss_pred             cccCCcEEE---ecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCcCCCCCCcCCCC
Q psy176           37 YLMENQKVW---VPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNY  100 (101)
Q Consensus        37 ~md~gq~VW---apDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAeED~~KDVDDNC  100 (101)
                      |++.+.+||   +|||++||+.|+|++..++.++|+..++  +.++++.++++|+....-..+||.|
T Consensus        28 ~~~~~~~vW~~~v~~~~~~~~~~~v~~~~~~~~~v~~~~g--~~~~v~~~~~~~~np~~~~~~~Dl~   92 (1010)
T 1g8x_A           28 TVSDKRYIWYNPDPDERDSYECGEIVSETSDSFTFKTVDG--QDRQVKKDDANQRNPIKFDGVEDMS   92 (1010)
T ss_dssp             CCCCCCEEEECSSTTCTTCCEEEEEEEEETTEEEEECSSS--SEEEEETTTCCBCCCGGGTTCSBGG
T ss_pred             chhcCCceeCccCcCcccCeeEEEEEEecCCeEEEEecCC--cEEEecHHhccccCcchhcchhhhh
Confidence            788999999   9999999999999999999999997654  5889999999999876556788876

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...

Probab=98.13  E-value=3.3e-06  Score=73.73  Aligned_cols=59  Identities=15%  Similarity=0.220  Sum_probs=51.1

Q ss_pred             CCcEEEecCC---CCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCcCCCCCCcCCCC
Q psy176           40 ENQKVWVPDP---ADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEEHDSKDVDDNY  100 (101)
Q Consensus        40 ~gq~VWapDp---~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAeED~~KDVDDNC  100 (101)
                      .+.+||+||+   ++||+.|+|++..++.++|+ .+ .++.++++.++++|+....-..+||.|
T Consensus        31 ~~~~vWv~~~~~~~~~~~~~~v~~~~~~~~~v~-~~-~g~~~~v~~~~v~~~np~~~~~~~Dl~   92 (770)
T 1w9i_A           31 DKRYIWYNPDPKERDSYECGEIVSETSDSFTFK-TV-DGQDRQVKKDDANQRNPIKFDGVEDMS   92 (770)
T ss_dssp             -CCEEEECSSTTCTTCCEEEEEEEECSSEEEEE-CT-TSCEEEEETTTCEECCCGGGTTCSBGG
T ss_pred             CCCEEEeeCCcccccCceEEEEEEecCCeEEee-cC-CCcEEEEchHhccccCcccccchhhhh
Confidence            6899999999   99999999999999999999 43 478899999999999876556788876

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=97.64  E-value=4.8e-05  Score=66.41  Aligned_cols=62  Identities=15%  Similarity=0.294  Sum_probs=47.0

Q ss_pred             ccCCcEEEecCCCCCeEEEEEEE-c--cCCeEEEEEcCCCCCeEEecC----CceecC-cCCCCCCcCCCCC
Q psy176           38 LMENQKVWVPDPADGFVLGRILD-L--GMDEVTVQPLDSKKPKAAFSL----DRVYTA-EEHDSKDVDDNYS  101 (101)
Q Consensus        38 md~gq~VWapDp~eGFiLgrIvD-I--G~d~~TVqPld~k~~~~~~~y----ddVFPA-eED~~KDVDDNCs  101 (101)
                      +..|..||+|||++||+.|+|++ +  |.+.++|++.+  ++.++++.    ++++|. ..+.-..+||.|.
T Consensus         7 ~~~g~~vwv~~~~~~~~~~~v~~~~~~~~~~~~v~~~~--g~~~~v~~~~~~~~~~~~~np~~~~~~~Dl~~   76 (795)
T 1w7j_A            7 YTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEE--GKDLEYCLDPKTKELPPLRNPDILVGENDLTA   76 (795)
T ss_dssp             CCTTCEEEEEETTTEEEEEEESSCCCTTCSEEEEECSS--SSEEEEECCTTTTCCCCBCCCGGGTTCSSSTT
T ss_pred             cccCCEEEEECCCCceEEEEEEeeccCCCceEEEEECC--CCEEEEeccCcccccccccCcchhccccchhh
Confidence            56789999999999999999995 3  56679998764  67788887    467774 3433356888763

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=97.31  E-value=9.9e-05  Score=65.95  Aligned_cols=63  Identities=14%  Similarity=0.289  Sum_probs=46.0

Q ss_pred             cccCCcEEEecCCCCCeEEEEEEE-c--cCCeEEEEEcCCCCCeEEecC----CceecC-cCCCCCCcCCCCC
Q psy176           37 YLMENQKVWVPDPADGFVLGRILD-L--GMDEVTVQPLDSKKPKAAFSL----DRVYTA-EEHDSKDVDDNYS  101 (101)
Q Consensus        37 ~md~gq~VWapDp~eGFiLgrIvD-I--G~d~~TVqPld~k~~~~~~~y----ddVFPA-eED~~KDVDDNCs  101 (101)
                      .+..|..||+|||.+||+.|+|+. +  |...++|++.+  ++.++++.    ++++|. ..+.-..+||.|.
T Consensus         6 ~~~~g~~vwv~~~~~~~~~~~v~~~~~~~~~~~~v~~~~--g~~~~~~~~~~~~~~~~~~np~~~~~~~Dl~~   76 (1080)
T 2dfs_A            6 LYTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEE--GKDLEYCLDPKTKELPPLRNPDILVGENDLTA   76 (1080)
T ss_dssp             CCCTTCEEEEEETTTEEEEEECSSCCCTTCSEEECCCSS--SSCCEEECCTTTCCCCCBCCCGGGSSCSBSTT
T ss_pred             hcccCCEEEEECCCCceEEEEEEeeecCCCceEEEEECC--CCEEEEecCCcccccccccCcccccchhhhhh
Confidence            356789999999999999999995 3  56679998665  46666666    457774 3433356888763

>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*

Probab=90.61  E-value=0.61  Score=32.86  Aligned_cols=37  Identities=14%  Similarity=0.108  Sum_probs=31.0

Q ss_pred             eccccCCcEEEecCCCCCeEEEEEEEccCCeEEEEEc
Q psy176           35 KPYLMENQKVWVPDPADGFVLGRILDLGMDEVTVQPL   71 (101)
Q Consensus        35 ~~~md~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPl   71 (101)
                      .+++--||.||+.|.+-.|-.|+|+++.+.++=..-.
T Consensus         3 ~~~v~vGq~V~akh~ngryy~~~V~~~~~~~~y~V~F   39 (118)
T 2qqr_A            3 MQSITAGQKVISKHKNGRFYQCEVVRLTTETFYEVNF   39 (118)
T ss_dssp             SSCCCTTCEEEEECTTSSEEEEEEEEEEEEEEEEEEE
T ss_pred             cceeccCCEEEEECCCCCEEeEEEEEEeeEEEEEEEc
Confidence            4677789999999999999999999998876655444

>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*

Probab=85.81  E-value=4.2  Score=28.62  Aligned_cols=50  Identities=18%  Similarity=0.144  Sum_probs=40.1

Q ss_pred             CcEEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCcC
Q psy176           41 NQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAEE   90 (101)
Q Consensus        41 gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAeE   90 (101)
                      +..|=++..+..|-.|.|+||+.++++|.-.+.-.+..+.|+++|-|.-.
T Consensus         5 ~~~VEV~~~~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~   54 (128)
T 3h8z_A            5 GLPVEVRGSNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPP   54 (128)
T ss_dssp             TCEEEEECTTSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCC
T ss_pred             ccEEEEecCCCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCC
Confidence            34555666778899999999999999999876645678899999987543

>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}

Probab=82.75  E-value=6.8  Score=25.70  Aligned_cols=49  Identities=18%  Similarity=0.229  Sum_probs=40.8

Q ss_pred             cCCcEEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceecCc
Q psy176           39 MENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYTAE   89 (101)
Q Consensus        39 d~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFPAe   89 (101)
                      ..|+-|-|+...-.|-||+|+|...+..-|+=.|+  ..+-+-+.++--..
T Consensus        17 ~~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~--S~~Wv~~kdi~kl~   65 (69)
T 2xk0_A           17 ALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQ--SEQWCEPDKLRKLG   65 (69)
T ss_dssp             CTTCEEEEECTTSCEEEEEEEEECSSCEEEEETTC--CEEEECTTTEECSS
T ss_pred             ccCCeEEEEecCCCEEEEEEEecCCceEEEEecCC--cceeeeHHHHHhhc
Confidence            57899999999999999999999999999987776  56667777776443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	101
d1br2a1	46	b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal	1e-04
d1kk8a1	48	b.34.3.1 (A:29-76) Myosin S1 fragment, N-terminal	3e-04
d2mysa1	46	b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal	7e-04

>d1br2a1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 46

class: All beta proteins
fold: SH3-like barrel
superfamily: Myosin S1 fragment, N-terminal domain
family: Myosin S1 fragment, N-terminal domain
domain: Myosin S1 fragment, N-terminal domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 34.6 bits (80), Expect = 1e-04
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 44 VWVPDPADGFVLGRILDLGMDEVTVQPLDSKK 75
          VWVP    GF    I +   DEVTV+  ++ K
Sbjct: 2  VWVPSEKHGFEAASIKEEKGDEVTVELQENGK 33

>d1kk8a1 b.34.3.1 (A:29-76) Myosin S1 fragment, N-terminal domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 48

class: All beta proteins
fold: SH3-like barrel
superfamily: Myosin S1 fragment, N-terminal domain
family: Myosin S1 fragment, N-terminal domain
domain: Myosin S1 fragment, N-terminal domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 33.5 bits (77), Expect = 3e-04
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 44 VWVPDPADGFVLGRILDLGMDEVTVQPLDSKK 75
           WVPD  +GF    I     DE+TV+ +    
Sbjct: 6  CWVPDEKEGFASAEIQSSKGDEITVKIVADSS 37

>d2mysa1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 46

class: All beta proteins
fold: SH3-like barrel
superfamily: Myosin S1 fragment, N-terminal domain
family: Myosin S1 fragment, N-terminal domain
domain: Myosin S1 fragment, N-terminal domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 32.7 bits (75), Expect = 7e-04
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 44 VWVPDPADGFVLGRILDLGMDEVTVQPLDSKK 75
          V+V  P   FV G I      +VTV+    + 
Sbjct: 5  VFVVHPKQSFVKGTIQSKEGGKVTVKTEGGET 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	101
d1br2a1	46	Myosin S1 fragment, N-terminal domain {Chicken (Ga	98.9
d1kk8a1	48	Myosin S1 fragment, N-terminal domain {Bay scallop	98.82
d2mysa1	46	Myosin S1 fragment, N-terminal domain {Chicken (Ga	98.64
d1w7ja1	58	Myosin S1 fragment, N-terminal domain {Chicken (Ga	96.17
d1vhka1	72	Hypothetical protein YqeU {Bacillus subtilis [TaxI	80.35

>d1br2a1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Myosin S1 fragment, N-terminal domain
family: Myosin S1 fragment, N-terminal domain
domain: Myosin S1 fragment, N-terminal domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=98.90  E-value=8.8e-10  Score=66.33  Aligned_cols=44  Identities=34%  Similarity=0.483  Sum_probs=34.3

Q ss_pred             EEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceec
Q psy176           43 KVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYT   87 (101)
Q Consensus        43 ~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFP   87 (101)
                      +||+||++|||+.|.|..-.++.+||+..++ +++++.+-|++++
T Consensus         1 ~VWVPd~kegfv~a~Ik~~~Gd~vtV~~~~~-Gk~~tvkkddvq~   44 (46)
T d1br2a1           1 LVWVPSEKHGFEAASIKEEKGDEVTVELQEN-GKKVTLSKDDIQK   44 (46)
T ss_dssp             CEEEECSSSSEEEEEC------CEEEEESSS-CCEEEECSTTCEE
T ss_pred             CEEeeCCcccEEEEEEEeccCCEEEEEEcCC-CcEEEEcHHHcEe
Confidence            5999999999999999999999999996654 7999999999986

>d1kk8a1 b.34.3.1 (A:29-76) Myosin S1 fragment, N-terminal domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Myosin S1 fragment, N-terminal domain
family: Myosin S1 fragment, N-terminal domain
domain: Myosin S1 fragment, N-terminal domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=98.82  E-value=3.9e-09  Score=63.97  Aligned_cols=46  Identities=26%  Similarity=0.466  Sum_probs=40.4

Q ss_pred             cCCcEEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCce
Q psy176           39 MENQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRV   85 (101)
Q Consensus        39 d~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddV   85 (101)
                      |..+.||+||+.|||+.|.|..-.++.+||+-.+. +++++..-|+|
T Consensus         1 D~KK~vWVPD~kegfv~a~Ik~~~Gd~vtV~~~~~-Gk~~tvkkddv   46 (48)
T d1kk8a1           1 DGKKNCWVPDEKEGFASAEIQSSKGDEITVKIVAD-SSTRTVKKDDI   46 (48)
T ss_dssp             CTTTEEEEEETTTEEEEEEEEEEETTEEEEEETTT-CCEEEEEGGGC
T ss_pred             CCcceEEecCCcccEEEEEEEEccCCEEEEEEcCC-CcEEEecHHHc
Confidence            45689999999999999999999999999996654 78998887776

>d2mysa1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Myosin S1 fragment, N-terminal domain
family: Myosin S1 fragment, N-terminal domain
domain: Myosin S1 fragment, N-terminal domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=98.64  E-value=2.9e-08  Score=59.77  Aligned_cols=45  Identities=27%  Similarity=0.369  Sum_probs=40.4

Q ss_pred             CcEEEecCCCCCeEEEEEEEccCCeEEEEEcCCCCCeEEecCCceec
Q psy176           41 NQKVWVPDPADGFVLGRILDLGMDEVTVQPLDSKKPKAAFSLDRVYT   87 (101)
Q Consensus        41 gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld~k~~~~~~~yddVFP   87 (101)
                      .+.||+||+.|||+.|.|..-.++.+||+-.  .+++++..=|+||+
T Consensus         2 Kk~vwVpD~ke~yv~~~Iks~~GdkvTV~t~--~G~tvtVk~ddi~~   46 (46)
T d2mysa1           2 KSSVFVVHPKQSFVKGTIQSKEGGKVTVKTE--GGETLTVKEDQVFS   46 (46)
T ss_dssp             TTEEEEECSSSSEEEEEEEEECSSEEEECCS--SSCCEEEEGGGEEC
T ss_pred             CceEEcccCcccEEEEEEEEccCCEEEEEEC--CCCEEEEeHHHccC
Confidence            4689999999999999999999999999843  37899999999994

>d1w7ja1 b.34.3.1 (A:5-62) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Myosin S1 fragment, N-terminal domain
family: Myosin S1 fragment, N-terminal domain
domain: Myosin S1 fragment, N-terminal domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=96.17  E-value=0.0015  Score=39.76  Aligned_cols=37  Identities=22%  Similarity=0.478  Sum_probs=28.9

Q ss_pred             CCcEEEecCCCCCeEEEEEEEc---cCCeEEEEEcCCCCC
Q psy176           40 ENQKVWVPDPADGFVLGRILDL---GMDEVTVQPLDSKKP   76 (101)
Q Consensus        40 ~gq~VWapDp~eGFiLgrIvDI---G~d~~TVqPld~k~~   76 (101)
                      -|-+||+|||++|.+-|.|++=   |...+.++.-|++..
T Consensus         5 kgtRvWiPd~e~vW~~AEl~~dyk~g~k~L~l~lEdg~~~   44 (58)
T d1w7ja1           5 KYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDL   44 (58)
T ss_dssp             TTCEEEEEETTTEEEEEEESSCCCTTCSEEEEECSSSSEE
T ss_pred             cCcEEEEECccccEeeeEEEEEeeCCCeEEEEEecCCCEE
Confidence            4789999999999999999864   455578876666433

>d1vhka1 b.122.1.2 (A:2-73) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: YggJ N-terminal domain-like
domain: Hypothetical protein YqeU
species: Bacillus subtilis [TaxId: 1423]

Probab=80.35  E-value=2.2  Score=24.73  Aligned_cols=35  Identities=9%  Similarity=0.079  Sum_probs=31.8

Q ss_pred             ccCCcEEEecCCCCCeEEEEEEEccCCeEEEEEcC
Q psy176           38 LMENQKVWVPDPADGFVLGRILDLGMDEVTVQPLD   72 (101)
Q Consensus        38 md~gq~VWapDp~eGFiLgrIvDIG~d~~TVqPld   72 (101)
                      |..|..+++-|...+--+|+|+.|+...+++..++
T Consensus        34 ~k~Gd~i~l~dg~g~~~~~~I~~i~k~~v~~~i~e   68 (72)
T d1vhka1          34 MNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIE   68 (72)
T ss_dssp             CCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEEE
T ss_pred             cCCCCEEEEEECCCCEEEEEEEEEECCEEEEEEEE
Confidence            56789999999999999999999999999998664