Psyllid ID: psy17703

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720
Protein Sequence
MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQDEKEHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSSIGSLRTPRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLEHQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLELTAALKKLVILLGPSVTVTQQKLIMDLKGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNT
Secondary Structure (PSIPRED)
ccccccccEEEEEEccccccccccccEEEEEEEEEEEcccccccccccccccEEEEEEEEEEEcccccccccccccccccHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccEEEEEcHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccccccccccccEEEEEEEEEEEEcccHHHHHHHHcccccccEEEEEcccccccccccccccccccEEEEEcccEEEccccccccccccccEEEEEEccccHHHHHHHHHHHHccccEEEEccccccccccEEEEEEccccccEEEEccEEEEEcccEEEEEcccccccccHHHHHHHHcccHHEEEccccEEEEHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccccccccHHcHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEHHHHHHHHHHHHHHccccccccHHHHcccHHHHHHHHHHHHHEEEEEEccccEEEEcHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEHHHHcccccccEEEEEEEEEEEccccccccccEEEEEccEEEEEEEEEEcccccccccccEEcccHHHHHHHHHHHccccHHHHHHHHHcccHccHHHHHHHHHHHHHcccccccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccEEEEHHHHHHccHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHccccEEEEEccccccccHHHccHHHHHHEEEEcEEEEEcccccHHHHEEEEEEcccccEEEEEEcccEEEcccccccccccccEEEEEccccccccEEcccccccccEEEEEEcccccHHHHHHHHHHHHcccEEEEcccccccEEEEEEEEEcccccEEEEEccEEEEccccEEEEccHccccHcHHHHHHHHHHHHHHHHHHHHHHEEEcHHHHHHHHcccccccccccccccccccccccHHccccEEEEEEccccHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccHHHHHHHHHHHHHHcccEEEEccEEEEEEcccccHcccEEEEEcccEEEEccHccccHcHHHHHHHHHHHHHHHHHHHHHHEEEcHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mpagqtphsvVLFTYNdlvdsiqpgdrvtvtgiyravplqvnprmrSVKSVYKTHIDVVHFRkidatrlykqdekehkfppERVELLKSlsrkpdiyerltsaicpsiygyedVKKGIMLQmfggtkktfdETISDRMseidlasplnygtpssigslrtprsgiqgtpirlrpdirtdrRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQlvcypqevipildmgvneyfferhpaavlehqiqvrpfnakktrnlrhlnpedidQLITINGMVIRTSNIIPEMREAFFRCIVCnysttveidrgriheptlctncstnhcfslvhnrshftdKQLVRLqetpaeinillcgdpgtsksQLLSYVYDlvprsqytsgkgssavgltayitkdpeTRQMVLQTGALVLadsgvccidefdkmsDTTRSILHEVMEQQTLSIAKAGIICQLNARTSIlaaanpcdsqwntsktiidnirlphtllSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQehlsptlseEASQRLIQTYVDMRKlgagrgrisaYPRQLESLIRLSEAHAKMRysetvevqDVDEAWRLHREALKqsatdplsgkidvsilTTGVSSAARQRQLELTAALKKLVILLGPSVTVTQQKLIMDLKGALVLAdsgvccidefdkmsDTTRSILHEVMEQQTLSIAKAGIICQLNARTSIlaaanpcdsqwnt
Flexible Loop (DISEMBL)
MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIyravplqvnprmrsvKSVYkthidvvhfrkidatrlykqdekehkfppervellkslsrkpdiyerltsaicpsiyGYEDVKKGIMLQMFGGTKKTFDETISDRMSEidlasplnygtpssigslrtprsgiqgtpirlrpdirtDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLEHQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSqytsgkgssavgLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEhlsptlseeaSQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREAlkqsatdplsgkidVSILTTGVSSAARQRQLELTAALKKLVILLGPSVTVTQQKLIMDLKGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILaaanpcdsqwnt
Low Complexity Region (SEG)
MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQDEKEHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSSIGSLRTPRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLEHQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTllsrfdlifllldPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLELTAALKKLVILLGPSVTVTQQKLIMDLKGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNT
Disordered region (IsUnstruct)
********SVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYK*********************KPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDET************************************IRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLEHQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNRSHFTDKQLVRLQETPAEINILLCGD*****************************VGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPT******QRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREA**********GKIDVSILTTGVSSAARQRQLELTAALKKLVILLGPSVTVTQQKLIMDLKGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAA*********
Disordered Region (DISOPRED)
MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRA****************KTHIDVVHFRK******************ERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGT***********MSEIDLASPLNYGTPSSIGSLRTPRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLEHQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNRSH**********ETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYV*************AYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREA*************************************************VTQQKLIMDLKGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQW**
Disordered Region (DISEMBL)
MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQDEKEHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSSIGSLRTPRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLEHQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLELTAALKKLVILLGPSVTVTQQKLIMDLKGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNT
Disordered Region (DISPRO)
****QTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLY**DEKEHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSSIGSLRTPRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLEHQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLELTAALKKLVILLGPSVTVTQQKLIMDLKGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQDEKEHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSSIGSLRTPRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLEHQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLELTAALKKLVILLGPSVTVTQQKLIMDLKGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	720	2.2.26 [Sep-21-2011]
Q26454	866	DNA replication licensing	yes	N/A	0.431	0.359	0.752	1e-141
Q6GL41	863	DNA replication licensing	yes	N/A	0.469	0.391	0.652	1e-133
Q5XK83	858	DNA replication licensing	N/A	N/A	0.469	0.393	0.649	1e-133
P30664	863	DNA replication licensing	N/A	N/A	0.433	0.361	0.698	1e-132
P33991	863	DNA replication licensing	yes	N/A	0.433	0.361	0.701	1e-132
P49717	862	DNA replication licensing	yes	N/A	0.433	0.361	0.692	1e-131
P30665	933	DNA replication licensing	yes	N/A	0.412	0.318	0.548	1e-92
P29458	931	DNA replication licensing	yes	N/A	0.373	0.288	0.570	2e-88
Q9UXG1	686	Minichromosome maintenanc	yes	N/A	0.405	0.425	0.431	4e-66
Q6NX31	720	DNA replication licensing	no	N/A	0.341	0.341	0.513	5e-65

>sp|Q26454|MCM4_DROME DNA replication licensing factor MCM4 OS=Drosophila melanogaster GN=dpa PE=1 SV=2

 Score =  502 bits (1293), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 246/327 (75%), Positives = 283/327 (86%), Gaps = 16/327 (4%)

Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
           +EI++LLCGDPGTSKSQ+L YV++LVPRSQYTSG+GSSAVGLTAY+TKDPETRQ+VLQTG
Sbjct: 504 SEIHLLLCGDPGTSKSQMLQYVFNLVPRSQYTSGRGSSAVGLTAYVTKDPETRQLVLQTG 563

Query: 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
           ALVLAD+GVCCIDEFDKM+D+TRS+LHEVMEQQTLSIAKAGIICQLNARTSILAAANP +
Sbjct: 564 ALVLADNGVCCIDEFDKMNDSTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPAE 623

Query: 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL--------------- 508
           SQWN  K IIDN++LPHTLLSRFDLIFL+LDPQ E FD RLA HL               
Sbjct: 624 SQWNKRKNIIDNVQLPHTLLSRFDLIFLVLDPQDEIFDKRLASHLVSLYYVTRHEEEDTM 683

Query: 509 -DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
            D++VLRDYIAYA+EHLSPTLS+EA QRLIQ YVDMRK+GAGRG+ISAYPRQLESLIRLS
Sbjct: 684 FDMSVLRDYIAYAREHLSPTLSDEAQQRLIQAYVDMRKVGAGRGQISAYPRQLESLIRLS 743

Query: 568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
           EAHAK+R S  VE+ DV+EAWRLHREALKQSATDPLSGKIDV ILTTG+S+AAR+++ +L
Sbjct: 744 EAHAKVRLSNQVELLDVEEAWRLHREALKQSATDPLSGKIDVGILTTGLSTAARKKRADL 803

Query: 628 TAALKKLVILLGPSVTVTQQKLIMDLK 654
            AA+K+ +   G  +TV  QKL  D+K
Sbjct: 804 VAAIKENLKKKGKVLTVPYQKLFSDIK 830

Acts as component of the Mcm2-7 complex (Mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the Mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. Required for DNA replication and cell proliferation. Essential role in mitotic DNA replication but not in endoreplication.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp|Q6GL41|MCM4_XENTR DNA replication licensing factor mcm4 OS=Xenopus tropicalis GN=mcm4 PE=2 SV=1

 Score =  475 bits (1223), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 238/365 (65%), Positives = 288/365 (78%), Gaps = 27/365 (7%)

Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
           AE+NILLCGDPGTSKSQLL YVY+LVPR QYTSGKGSSAVGLTAY+ KDPETRQ+VLQTG
Sbjct: 502 AEVNILLCGDPGTSKSQLLQYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTG 561

Query: 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
           ALVL+D+G+CCIDEFDKM+++TRS+LHEVMEQQTLSIAKAGIICQLNARTS+LAAANP +
Sbjct: 562 ALVLSDNGICCIDEFDKMNESTRSVLHEVMEQQTLSIAKAGIICQLNARTSVLAAANPVE 621

Query: 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLA----------------RH 507
           SQWN  KT I+NI+LPHTLLSRFDLIFL+LDPQ E +D RLA                 H
Sbjct: 622 SQWNPKKTTIENIQLPHTLLSRFDLIFLMLDPQDETYDRRLAHHLVALYYQSEEQMKEEH 681

Query: 508 LDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
           LD+ VL+DYIAYA+ +++P L EEASQ LI+ YVDMRK+G+GRG +SAYPRQLESLIRLS
Sbjct: 682 LDMAVLKDYIAYARTYVNPRLGEEASQALIEAYVDMRKIGSGRGMVSAYPRQLESLIRLS 741

Query: 568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
           EAHAK+R+S  VE  DV+EA RLHREALKQSATDP +G +D+SILTTG+S+ AR+R+ EL
Sbjct: 742 EAHAKVRFSSKVETIDVEEAKRLHREALKQSATDPRTGIVDISILTTGMSATARKRKEEL 801

Query: 628 TAALKKLVILLGPSVTVTQQKLIMDLKGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQ 687
              LKKL+   G +  +  Q+L  DL+G    +D+ V   D FD+        LH + ++
Sbjct: 802 AQVLKKLIQSKGKTPALKYQQLFEDLRGQ---SDAAVTK-DMFDEA-------LHALADE 850

Query: 688 QTLSI 692
             L++
Sbjct: 851 DYLTV 855

Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q5XK83|MCM4A_XENLA DNA replication licensing factor mcm4-A OS=Xenopus laevis GN=mcm4-a PE=1 SV=1

 Score =  474 bits (1221), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/365 (64%), Positives = 287/365 (78%), Gaps = 27/365 (7%)

Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
           AE+NILLCGDPGTSKSQLL YVY+LVPR QYTSGKGSSAVGLTAY+ KDPETRQ+VLQTG
Sbjct: 497 AEVNILLCGDPGTSKSQLLQYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTG 556

Query: 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
           ALVL+D+G+CCIDEFDKM+++TRS+LHEVMEQQTLSIAKAGIICQLNARTS+LAAANP +
Sbjct: 557 ALVLSDNGICCIDEFDKMNESTRSVLHEVMEQQTLSIAKAGIICQLNARTSVLAAANPVE 616

Query: 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLA----------------RH 507
           SQWN  KT I+NI+LPHTLLSRFDLIFL+LDPQ E +D RLA                 H
Sbjct: 617 SQWNPKKTTIENIQLPHTLLSRFDLIFLMLDPQDETYDRRLAHHLVALYYQSEEQLKEEH 676

Query: 508 LDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
           LD+ VL+DYIAYA+ +++P L EEASQ LI+ YVDMRK+G+GRG +SAYPRQLESLIRLS
Sbjct: 677 LDMAVLKDYIAYARTYVNPRLGEEASQALIEAYVDMRKIGSGRGMVSAYPRQLESLIRLS 736

Query: 568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
           EAHAK+R+S  VE  DV+EA RLHREALKQSATDP +G +D+SILTTG+S+ AR+R+ EL
Sbjct: 737 EAHAKVRFSSKVETIDVEEAKRLHREALKQSATDPRTGIVDISILTTGMSATARKRKEEL 796

Query: 628 TAALKKLVILLGPSVTVTQQKLIMDLKGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQ 687
              LKKL+   G +     Q+L  DL+G    +D+ +   D FD+        LH + ++
Sbjct: 797 AQVLKKLIQSKGKTPAFKYQQLFEDLRGQ---SDAAITK-DMFDEA-------LHALADE 845

Query: 688 QTLSI 692
             L++
Sbjct: 846 DYLTV 850

Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P30664|MCM4B_XENLA DNA replication licensing factor mcm4-B OS=Xenopus laevis GN=mcm4-b PE=1 SV=3

 Score =  471 bits (1213), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/328 (69%), Positives = 272/328 (82%), Gaps = 16/328 (4%)

Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
           AE+NILLCGDPGTSKSQLL YV++LVPR QYTSGKGSSAVGLTAY+ KDPETRQ+VLQTG
Sbjct: 502 AEVNILLCGDPGTSKSQLLQYVFNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTG 561

Query: 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
           ALVL+D+G+CCIDEFDKM+++TRS+LHEVMEQQTLSIAKAGIICQLNARTS+LAAANP +
Sbjct: 562 ALVLSDNGICCIDEFDKMNESTRSVLHEVMEQQTLSIAKAGIICQLNARTSVLAAANPVE 621

Query: 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLA----------------RH 507
           SQWN  KT I+NI+LPHTLLSRFDLIFL+LDPQ E +D RLA                 H
Sbjct: 622 SQWNPKKTTIENIQLPHTLLSRFDLIFLMLDPQDEAYDRRLAHHLVALYYQSEEQMKEEH 681

Query: 508 LDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
           LD+ VL+DYIAYA+ +++P LSEEASQ LI+ YV MRK+G+GRG +SAYPRQLESLIRLS
Sbjct: 682 LDMAVLKDYIAYARTYVNPRLSEEASQALIEAYVSMRKIGSGRGMVSAYPRQLESLIRLS 741

Query: 568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
           EAHAK+R+S  VE  DV+EA RLHREALKQSATDP +G +D+SILTTG+S+ AR+R+ EL
Sbjct: 742 EAHAKVRFSNKVETIDVEEAKRLHREALKQSATDPRTGIVDISILTTGMSATARKRKEEL 801

Query: 628 TAALKKLVILLGPSVTVTQQKLIMDLKG 655
              LKKL+   G +  +  Q+L  DL+G
Sbjct: 802 AQVLKKLIQSKGKTPALKYQQLFEDLRG 829

Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P33991|MCM4_HUMAN DNA replication licensing factor MCM4 OS=Homo sapiens GN=MCM4 PE=1 SV=5

 Score =  471 bits (1212), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/328 (70%), Positives = 270/328 (82%), Gaps = 16/328 (4%)

Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
           AEINILLCGDPGTSKSQLL YVY+LVPR QYTSGKGSSAVGLTAY+ KDPETRQ+VLQTG
Sbjct: 502 AEINILLCGDPGTSKSQLLQYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTG 561

Query: 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
           ALVL+D+G+CCIDEFDKM+++TRS+LHEVMEQQTLSIAKAGIICQLNARTS+LAAANP +
Sbjct: 562 ALVLSDNGICCIDEFDKMNESTRSVLHEVMEQQTLSIAKAGIICQLNARTSVLAAANPIE 621

Query: 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARH---------------- 507
           SQWN  KT I+NI+LPHTLLSRFDLIFLLLDPQ E +D RLA H                
Sbjct: 622 SQWNPKKTTIENIQLPHTLLSRFDLIFLLLDPQDEAYDRRLAHHLVALYYQSEEQAEEEL 681

Query: 508 LDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
           LD+ VL+DYIAYA   + P LSEEASQ LI+ YVDMRK+G+ RG +SAYPRQLESLIRL+
Sbjct: 682 LDMAVLKDYIAYAHSTIMPRLSEEASQALIEAYVDMRKIGSSRGMVSAYPRQLESLIRLA 741

Query: 568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
           EAHAK+R S  VE  DV+EA RLHREALKQSATDP +G +D+SILTTG+S+ +R+R+ EL
Sbjct: 742 EAHAKVRLSNKVEAIDVEEAKRLHREALKQSATDPRTGIVDISILTTGMSATSRKRKEEL 801

Query: 628 TAALKKLVILLGPSVTVTQQKLIMDLKG 655
             ALKKL++  G +  +  Q+L  D++G
Sbjct: 802 AEALKKLILSKGKTPALKYQQLFEDIRG 829

Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P49717|MCM4_MOUSE DNA replication licensing factor MCM4 OS=Mus musculus GN=Mcm4 PE=2 SV=1

 Score =  469 bits (1207), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/328 (69%), Positives = 271/328 (82%), Gaps = 16/328 (4%)

Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
           AEINILLCGDPGTSKSQLL YVY+LVPR QYTSGKGSSAVGLTAY+ KDPETRQ+VLQTG
Sbjct: 501 AEINILLCGDPGTSKSQLLQYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTG 560

Query: 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
           ALVL+D+G+CCIDEFDKM+++TRS+LHEVMEQQTLSIAKAGIICQLNARTS+LAAANP +
Sbjct: 561 ALVLSDNGICCIDEFDKMNESTRSVLHEVMEQQTLSIAKAGIICQLNARTSVLAAANPIE 620

Query: 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARH---------------- 507
           SQWN  KT I+NI+LPHTLLSRFDLIFL+LDPQ E +D RLA H                
Sbjct: 621 SQWNPKKTTIENIQLPHTLLSRFDLIFLMLDPQDEAYDRRLAHHLVSLYYQSEEQVEEEF 680

Query: 508 LDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
           LD+ VL+DYIAYA   + P LSEEASQ LI+ YV+MRK+G+ RG +SAYPRQLESLIRL+
Sbjct: 681 LDMAVLKDYIAYAHSTIMPRLSEEASQALIEAYVNMRKIGSSRGMVSAYPRQLESLIRLA 740

Query: 568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
           EAHAK+R+S  VE  DV+EA RLHREALKQSATDP +G +D+SILTTG+S+ +R+R+ EL
Sbjct: 741 EAHAKVRFSNKVEAIDVEEAKRLHREALKQSATDPRTGIVDISILTTGMSATSRKRKEEL 800

Query: 628 TAALKKLVILLGPSVTVTQQKLIMDLKG 655
             AL+KL++  G +  +  Q+L  D++G
Sbjct: 801 AEALRKLILSKGKTPALKYQQLFEDIRG 828

Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P30665|MCM4_YEAST DNA replication licensing factor MCM4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MCM4 PE=1 SV=2

 Score =  341 bits (875), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 175/319 (54%), Positives = 227/319 (71%), Gaps = 22/319 (6%)

Query: 332 TDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITK 391
           T+K   +      +INILLCGDP TSKSQ+L YV+ + PR  YTSGKGSSAVGLTAYIT+
Sbjct: 548 TNKTFTKGGRYRGDINILLCGDPSTSKSQILQYVHKITPRGVYTSGKGSSAVGLTAYITR 607

Query: 392 DPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNA 451
           D +T+Q+VL++GALVL+D GVCCIDEFDKMSD+TRS+LHEVMEQQT+SIAKAGII  LNA
Sbjct: 608 DVDTKQLVLESGALVLSDGGVCCIDEFDKMSDSTRSVLHEVMEQQTISIAKAGIITTLNA 667

Query: 452 RTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDIT 511
           R+SILA+ANP  S++N +  + +NI LP  LLSRFDL++L+LD   E+ D  LA+HL   
Sbjct: 668 RSSILASANPIGSRYNPNLPVTENIDLPPPLLSRFDLVYLVLDKVDEKNDRELAKHLTNL 727

Query: 512 VLRD------------------YIAYAQEHLSPTLSEEASQRLIQTYVDMRKLG----AG 549
            L D                  YI+YA+EH+ P ++E A   L++ YV MRK+G    + 
Sbjct: 728 YLEDKPEHISQDDVLPVEFLTMYISYAKEHIHPIITEAAKTELVRAYVGMRKMGDDSRSD 787

Query: 550 RGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDV 609
             RI+A  RQLES+IRL+EAHAKM+    VE++DV EA RL R A+K  ATDP +GKID+
Sbjct: 788 EKRITATTRQLESMIRLAEAHAKMKLKNVVELEDVQEAVRLIRSAIKDYATDPKTGKIDM 847

Query: 610 SILTTGVSSAARQRQLELT 628
           +++ TG S   R+ Q +L+
Sbjct: 848 NLVQTGKSVIQRKLQEDLS 866

Acts as component of the MCM2-7 complex (MCM complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the MCM2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. Once loaded onto DNA, double hexamers can slide on dsDNA in the absence of ATPase activity. Required for S phase execution.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P29458|MCM4_SCHPO DNA replication licensing factor mcm4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mcm4 PE=1 SV=2

 Score =  327 bits (838), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 166/291 (57%), Positives = 208/291 (71%), Gaps = 22/291 (7%)

Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
            +INIL+CGDP TSKSQ+L YV+ + PR  YTSGKGSSAVGLTAYIT+D +T+Q+VL++G
Sbjct: 537 GDINILMCGDPSTSKSQILKYVHKIAPRGVYTSGKGSSAVGLTAYITRDQDTKQLVLESG 596

Query: 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
           ALVL+D G+CCIDEFDKMSD TRSILHEVMEQQT+++AKAGII  LNARTSILA+ANP  
Sbjct: 597 ALVLSDGGICCIDEFDKMSDATRSILHEVMEQQTVTVAKAGIITTLNARTSILASANPIG 656

Query: 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL--------------- 508
           S++N    +  NI LP TLLSRFDL++L+LD   E  D +LA H+               
Sbjct: 657 SKYNPDLPVTKNIDLPPTLLSRFDLVYLILDRVDETLDRKLANHIVSMYMEDTPEHATDM 716

Query: 509 ---DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLG----AGRGRISAYPRQLE 561
               +  L  YI YA+ +++P +SEEA++ L+  YV MRKLG    A   RI+A  RQLE
Sbjct: 717 EVFSVEFLTSYITYARNNINPVISEEAAKELVNAYVGMRKLGEDVRASEKRITATTRQLE 776

Query: 562 SLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSIL 612
           S+IRLSEAHAKM     VEV DV EA RL + A+K  ATDP +GKI + ++
Sbjct: 777 SMIRLSEAHAKMHLRNVVEVGDVLEAARLIKTAIKDYATDPATGKISLDLI 827

Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity (By similarity). Required for S phase execution.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q9UXG1|MCM_SULSO Minichromosome maintenance protein MCM OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=MCM PE=1 SV=1

 Score =  253 bits (646), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 133/308 (43%), Positives = 194/308 (62%), Gaps = 16/308 (5%)

Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
            +I+IL+ GDPGT+KSQ+L ++  + PR+ YT+GKGS+A GLTA + ++  T +  L+ G
Sbjct: 332 GDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAG 391

Query: 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
           ALVLAD G+  IDE DKM D  R  +HE MEQQT+SIAKAGI+ +LNAR +++AA NP  
Sbjct: 392 ALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKF 451

Query: 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARH-------------LDI 510
            ++ + + + DNI LP T+LSRFDLIF+L D   EQ D  LA +             +DI
Sbjct: 452 GRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDI 510

Query: 511 TVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGR--GRISAYPRQLESLIRLSE 568
             LR YIAYA+++++P ++ EA   +   +V+MRK  +      I   PRQLE+LIR+SE
Sbjct: 511 DTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISE 570

Query: 569 AHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLELT 628
           A+AKM     V  +D + A  + R  L+    D  SGKID+  + TG   +AR++ +++ 
Sbjct: 571 AYAKMALKAEVTREDAERAINIMRLFLESVGVDMESGKIDIDTIMTGKPKSAREKMMKII 630

Query: 629 AALKKLVI 636
             +  L +
Sbjct: 631 EIIDSLAV 638

Presumptive replicative helicase. Has ATPase and DNA helicase activities. The latter preferentially melts 5'-tailed oligonucleotides and is stimulated by the SSB protein (single-stranded DNA binding protein). The active ATPase sites in the MCM ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The helicase function is proposed to use a partially sequential mode of ATP hydrolysis; the complex appears to tolerate multiple catalytically inactive subunits.

Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (taxid: 273057)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q6NX31|MCM7_XENTR DNA replication licensing factor mcm7 OS=Xenopus tropicalis GN=mcm7 PE=2 SV=1

 Score =  249 bits (636), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 136/265 (51%), Positives = 170/265 (64%), Gaps = 19/265 (7%)

Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
             INI L GDPG +KSQLLSY+  L PRSQYT+G+GSS VGLTA + KDP T +M L+ G
Sbjct: 372 GNINICLMGDPGVAKSQLLSYIDRLAPRSQYTTGRGSSGVGLTAAVMKDPVTGEMTLEGG 431

Query: 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
           ALVLAD GVCCIDEFDKM DT R+ +HEVMEQQT+SIAKAGI+  LNAR SILAAANP  
Sbjct: 432 ALVLADQGVCCIDEFDKMMDTDRTAIHEVMEQQTISIAKAGIMTTLNARCSILAAANPAY 491

Query: 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARH---------------- 507
            ++N  KT+  NI+LP  LLSRFDL++L+ D      D RLA+H                
Sbjct: 492 GRYNPKKTVEQNIQLPAALLSRFDLLWLIQDKPDRDNDLRLAQHITYVHQHSKQPPSQFQ 551

Query: 508 -LDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLG-AGRGRISAYPRQLESLIR 565
            LD+ ++R YI   +    P + E  +  L   YV+MRK     +       R L S++R
Sbjct: 552 PLDMKLMRRYITMCKRK-QPAIPESLADYLTAAYVEMRKEARTNKDMTFTSARTLLSILR 610

Query: 566 LSEAHAKMRYSETVEVQDVDEAWRL 590
           LS A A++R  + VE +DV+EA RL
Sbjct: 611 LSTALARLRLEDVVEKEDVNEAMRL 635

Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differentially to the complex helicase activity. The existence of maternal and zygotic forms of mcm3 and mcm6 suggests that specific forms of mcm2-7 complexes may be used during different stages of development.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	720
189238875	883	PREDICTED: similar to DNA replication li	0.438	0.357	0.741	1e-141
195121564	863	GI20404 [Drosophila mojavensis] gi|19391	0.431	0.360	0.755	1e-140
195425383	871	GK10701 [Drosophila willistoni] gi|19415	0.438	0.362	0.747	1e-140
195383940	864	GJ20076 [Drosophila virilis] gi|19414548	0.431	0.359	0.755	1e-140
194757594	865	GF13675 [Drosophila ananassae] gi|190622	0.438	0.365	0.747	1e-140
194863800	866	GG10740 [Drosophila erecta] gi|190662487	0.431	0.359	0.755	1e-140
195474398	866	GE23926 [Drosophila yakuba] gi|194175579	0.431	0.359	0.755	1e-139
195029713	863	GH19815 [Drosophila grimshawi] gi|193903	0.438	0.366	0.744	1e-139
195332135	866	GM20786 [Drosophila sechellia] gi|194124	0.431	0.359	0.752	1e-139
17137242	866	disc proliferation abnormal [Drosophila	0.431	0.359	0.752	1e-139

>gi|189238875|ref|XP_973671.2| PREDICTED: similar to DNA replication licensing factor MCM4 [Tribolium castaneum]

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 247/333 (74%), Positives = 292/333 (87%), Gaps = 17/333 (5%)

Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
           +EINILLCGDPGTSKSQLL YVY+LVPRSQYTSGKGSSAVGLTAY+TKD ETRQ+VLQTG
Sbjct: 517 SEINILLCGDPGTSKSQLLQYVYNLVPRSQYTSGKGSSAVGLTAYVTKDTETRQLVLQTG 576

Query: 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
           ALVLAD+G+CCIDEFDKM+D+TRS+LHEVMEQQTLSIAKAGIICQLNARTSILAAANP +
Sbjct: 577 ALVLADNGICCIDEFDKMNDSTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPSE 636

Query: 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARH---------------- 507
           SQWN +KTII+N++LPHTLLSRFDLIFL+LDPQSE FD +LA H                
Sbjct: 637 SQWNKNKTIIENVQLPHTLLSRFDLIFLILDPQSELFDRKLASHLVSLYHKAPQQNDDEI 696

Query: 508 LDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
           LD+++LRDY+AYA+EH+ P LSEEASQRLIQ YVDMRK+G+GRG+ISAYPRQLESLIRLS
Sbjct: 697 LDMSILRDYLAYAKEHIHPKLSEEASQRLIQAYVDMRKVGSGRGQISAYPRQLESLIRLS 756

Query: 568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
           EAHAK+R+S+ V+V+DV+EAWRLHREALKQSATDPLSGKIDV ILTTG+S+AAR+R++EL
Sbjct: 757 EAHAKVRFSQVVQVEDVEEAWRLHREALKQSATDPLSGKIDVGILTTGLSNAARKRRVEL 816

Query: 628 TAALKKLVILLGPSVTVTQQKLIMDLK-GALVL 659
             A+KKL+   G   T+  QKL+ +++ G+ V+
Sbjct: 817 AQAMKKLIESKGKVPTINYQKLLAEMREGSSVM 849

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195121564|ref|XP_002005290.1| GI20404 [Drosophila mojavensis] gi|193910358|gb|EDW09225.1| GI20404 [Drosophila mojavensis]

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/327 (75%), Positives = 284/327 (86%), Gaps = 16/327 (4%)

Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
           +EI++LLCGDPGTSKSQ+L YVY+LVPRSQYTSG+GSSAVGLTAY+TKDPETRQ+VLQTG
Sbjct: 501 SEIHLLLCGDPGTSKSQMLQYVYNLVPRSQYTSGRGSSAVGLTAYVTKDPETRQLVLQTG 560

Query: 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
           ALVLAD+GVCCIDEFDKM+D+TRS+LHEVMEQQTLSIAKAGIICQLNARTSILAAANP +
Sbjct: 561 ALVLADNGVCCIDEFDKMNDSTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPAE 620

Query: 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL--------------- 508
           SQWN  K IIDN++LPHTLLSRFDLIFL+LDPQ E FD RLA HL               
Sbjct: 621 SQWNKRKNIIDNVQLPHTLLSRFDLIFLVLDPQDELFDKRLASHLVSLYYVTRHEEEDTM 680

Query: 509 -DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
            D++VLRDYIAYA+EHLSPTLS+EA QRLIQ YVDMRK+GAGRG+ISAYPRQLESLIRLS
Sbjct: 681 FDMSVLRDYIAYAREHLSPTLSDEAQQRLIQAYVDMRKVGAGRGQISAYPRQLESLIRLS 740

Query: 568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
           EAHAK+R S +VE+QDV+EAWRLHREALKQSATDPLSGKIDV ILTTG+S+AAR+++ +L
Sbjct: 741 EAHAKVRLSNSVELQDVEEAWRLHREALKQSATDPLSGKIDVGILTTGLSTAARKKRADL 800

Query: 628 TAALKKLVILLGPSVTVTQQKLIMDLK 654
            AA+K+ +   G   TV  QKL  ++K
Sbjct: 801 VAAIKENLKKKGKVPTVPYQKLFKEIK 827

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195425383|ref|XP_002060989.1| GK10701 [Drosophila willistoni] gi|194157074|gb|EDW71975.1| GK10701 [Drosophila willistoni]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/333 (74%), Positives = 288/333 (86%), Gaps = 17/333 (5%)

Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
           +EI++LLCGDPGTSKSQ+L YVY+LVPRSQYTSG+GSSAVGLTAY+TKDPETRQ+VLQTG
Sbjct: 509 SEIHLLLCGDPGTSKSQMLQYVYNLVPRSQYTSGRGSSAVGLTAYVTKDPETRQLVLQTG 568

Query: 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
           ALVLAD+GVCCIDEFDKM+D+TRS+LHEVMEQQTLSIAKAGIICQLNARTSILAAANP +
Sbjct: 569 ALVLADNGVCCIDEFDKMNDSTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPAE 628

Query: 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL--------------- 508
           SQWN  K IIDN++LPHTLLSRFDLIFL+LDPQ E FD RLA HL               
Sbjct: 629 SQWNKRKNIIDNVQLPHTLLSRFDLIFLVLDPQDEIFDKRLASHLVSLYYVTRHEEEDTM 688

Query: 509 -DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
            D++VLRDYIAYA+EHLSPTLS+EA QRLIQ YVDMRK+GAGRG+ISAYPRQLESLIRLS
Sbjct: 689 FDMSVLRDYIAYAREHLSPTLSDEAQQRLIQAYVDMRKVGAGRGQISAYPRQLESLIRLS 748

Query: 568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
           EAHAK+R S TVE++DV+EAWRLHREALKQSATDPLSGKIDV ILTTG+S+AAR+++ +L
Sbjct: 749 EAHAKVRLSGTVELEDVEEAWRLHREALKQSATDPLSGKIDVGILTTGLSTAARKKRADL 808

Query: 628 TAALKKLVILLGPSVTVTQQKLIMDLK-GALVL 659
            AA+K+ +   G   TV  QKL  ++K G+ +L
Sbjct: 809 VAAIKENLKKKGKVPTVPYQKLFKEIKEGSQIL 841

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195383940|ref|XP_002050683.1| GJ20076 [Drosophila virilis] gi|194145480|gb|EDW61876.1| GJ20076 [Drosophila virilis]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/327 (75%), Positives = 283/327 (86%), Gaps = 16/327 (4%)

Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
           +EI++LLCGDPGTSKSQ+L YVY+LVPRSQYTSG+GSSAVGLTAY+TKDPETRQ+VLQTG
Sbjct: 502 SEIHLLLCGDPGTSKSQMLQYVYNLVPRSQYTSGRGSSAVGLTAYVTKDPETRQLVLQTG 561

Query: 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
           ALVLAD+GVCCIDEFDKM+D+TRS+LHEVMEQQTLSIAKAGIICQLNARTSILAAANP +
Sbjct: 562 ALVLADNGVCCIDEFDKMNDSTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPAE 621

Query: 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL--------------- 508
           SQWN  K IIDN++LPHTLLSRFDLIFL+LDPQ E FD RLA HL               
Sbjct: 622 SQWNKRKNIIDNVQLPHTLLSRFDLIFLVLDPQDELFDKRLASHLVSLYYVTRHEEEDTM 681

Query: 509 -DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
            D++VLRDYIAYA+EHLSPTLS+EA QRLIQ YVDMRK+GAGRG+ISAYPRQLESLIRLS
Sbjct: 682 FDMSVLRDYIAYAREHLSPTLSDEAQQRLIQAYVDMRKVGAGRGQISAYPRQLESLIRLS 741

Query: 568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
           EAHAK+R S  VE+QDV+EAWRLHREALKQSATDPLSGKIDV ILTTG+S+AAR+++ +L
Sbjct: 742 EAHAKVRLSNAVELQDVEEAWRLHREALKQSATDPLSGKIDVGILTTGLSTAARKKRADL 801

Query: 628 TAALKKLVILLGPSVTVTQQKLIMDLK 654
            AA+K+ +   G   TV  QKL  ++K
Sbjct: 802 VAAIKENLKKKGKVPTVPYQKLFKEIK 828

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194757594|ref|XP_001961049.1| GF13675 [Drosophila ananassae] gi|190622347|gb|EDV37871.1| GF13675 [Drosophila ananassae]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/333 (74%), Positives = 287/333 (86%), Gaps = 17/333 (5%)

Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
           +EI++LLCGDPGTSKSQ+L YVY+LVPRSQYTSG+GSSAVGLTAY+TKDPETRQ+VLQTG
Sbjct: 503 SEIHLLLCGDPGTSKSQMLQYVYNLVPRSQYTSGRGSSAVGLTAYVTKDPETRQLVLQTG 562

Query: 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
           ALVLAD+GVCCIDEFDKM+D+TRS+LHEVMEQQTLSIAKAGIICQLNARTSILAAANP +
Sbjct: 563 ALVLADNGVCCIDEFDKMNDSTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPAE 622

Query: 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL--------------- 508
           SQWN  K IIDN++LPHTLLSRFDLIFL+LDPQ E FD RLA HL               
Sbjct: 623 SQWNKRKNIIDNVQLPHTLLSRFDLIFLVLDPQDEIFDKRLASHLVSLYYVTRHEEEDTM 682

Query: 509 -DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
            D++VLRDYIAYA+EHLSPTLS+EA QRLIQ YVDMRK+GAGRG+ISAYPRQLESLIRLS
Sbjct: 683 FDMSVLRDYIAYAREHLSPTLSDEAQQRLIQAYVDMRKVGAGRGQISAYPRQLESLIRLS 742

Query: 568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
           EAHAK+R S  VE+QDV+EAWRLHREALKQSATDPLSGKIDV ILTTG+S+AAR+++ +L
Sbjct: 743 EAHAKVRLSNEVELQDVEEAWRLHREALKQSATDPLSGKIDVGILTTGLSTAARKKRADL 802

Query: 628 TAALKKLVILLGPSVTVTQQKLIMDLK-GALVL 659
            AA+K+ +   G   TV  QKL  ++K G+ +L
Sbjct: 803 VAAIKENLKKKGKVPTVPYQKLFKEIKEGSQIL 835

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194863800|ref|XP_001970620.1| GG10740 [Drosophila erecta] gi|190662487|gb|EDV59679.1| GG10740 [Drosophila erecta]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 247/327 (75%), Positives = 283/327 (86%), Gaps = 16/327 (4%)

Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
           +EI++LLCGDPGTSKSQ+L YVY+LVPRSQYTSG+GSSAVGLTAY+TKDPETRQ+VLQTG
Sbjct: 504 SEIHLLLCGDPGTSKSQMLQYVYNLVPRSQYTSGRGSSAVGLTAYVTKDPETRQLVLQTG 563

Query: 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
           ALVLAD+GVCCIDEFDKM+D+TRS+LHEVMEQQTLSIAKAGIICQLNARTSILAAANP +
Sbjct: 564 ALVLADNGVCCIDEFDKMNDSTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPAE 623

Query: 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL--------------- 508
           SQWN  K IIDN++LPHTLLSRFDLIFL+LDPQ E FD RLA HL               
Sbjct: 624 SQWNKRKNIIDNVQLPHTLLSRFDLIFLVLDPQDEIFDKRLASHLVSLYYVTRHEEEDTM 683

Query: 509 -DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
            D++VLRDYIAYA+EHLSPTLS+EA QRLIQ YVDMRK+GAGRG+ISAYPRQLESLIRLS
Sbjct: 684 FDMSVLRDYIAYAREHLSPTLSDEAQQRLIQAYVDMRKVGAGRGQISAYPRQLESLIRLS 743

Query: 568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
           EAHAK+R S  VE+ DV+EAWRLHREALKQSATDPLSGKIDV ILTTG+S+AAR+++ +L
Sbjct: 744 EAHAKVRLSNEVELLDVEEAWRLHREALKQSATDPLSGKIDVGILTTGLSTAARKKRADL 803

Query: 628 TAALKKLVILLGPSVTVTQQKLIMDLK 654
            AA+K+ +   G  +TV  QKL  D+K
Sbjct: 804 VAAIKENLKKKGKVLTVPYQKLFNDIK 830

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195474398|ref|XP_002089478.1| GE23926 [Drosophila yakuba] gi|194175579|gb|EDW89190.1| GE23926 [Drosophila yakuba]

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 247/327 (75%), Positives = 283/327 (86%), Gaps = 16/327 (4%)

Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
           +EI++LLCGDPGTSKSQ+L YVY+LVPRSQYTSG+GSSAVGLTAY+TKDPETRQ+VLQTG
Sbjct: 504 SEIHLLLCGDPGTSKSQMLQYVYNLVPRSQYTSGRGSSAVGLTAYVTKDPETRQLVLQTG 563

Query: 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
           ALVLAD+GVCCIDEFDKM+D+TRS+LHEVMEQQTLSIAKAGIICQLNARTSILAAANP +
Sbjct: 564 ALVLADNGVCCIDEFDKMNDSTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPAE 623

Query: 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL--------------- 508
           SQWN  K IIDN++LPHTLLSRFDLIFL+LDPQ E FD RLA HL               
Sbjct: 624 SQWNKRKNIIDNVQLPHTLLSRFDLIFLVLDPQDEIFDKRLASHLVSLYYVTRHEEEDTM 683

Query: 509 -DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
            D++VLRDYIAYA+EHLSPTLS+EA QRLIQ YVDMRK+GAGRG+ISAYPRQLESLIRLS
Sbjct: 684 FDMSVLRDYIAYAREHLSPTLSDEAQQRLIQAYVDMRKVGAGRGQISAYPRQLESLIRLS 743

Query: 568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
           EAHAK+R S  VE+ DV+EAWRLHREALKQSATDPLSGKIDV ILTTG+S+AAR+++ +L
Sbjct: 744 EAHAKVRLSNEVELLDVEEAWRLHREALKQSATDPLSGKIDVGILTTGLSTAARKKRADL 803

Query: 628 TAALKKLVILLGPSVTVTQQKLIMDLK 654
            AA+K+ +   G  +TV  QKL  D+K
Sbjct: 804 VAAIKENLKKKGKVLTVPYQKLFNDIK 830

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195029713|ref|XP_001987716.1| GH19815 [Drosophila grimshawi] gi|193903716|gb|EDW02583.1| GH19815 [Drosophila grimshawi]

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 248/333 (74%), Positives = 287/333 (86%), Gaps = 17/333 (5%)

Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
           +EI++LLCGDPGTSKSQ+L YVY+LVPRSQYTSG+GSSAVGLTAY+TKDPETRQ+VLQTG
Sbjct: 501 SEIHLLLCGDPGTSKSQMLQYVYNLVPRSQYTSGRGSSAVGLTAYVTKDPETRQLVLQTG 560

Query: 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
           ALVLAD+GVCCIDEFDKM+D+TRS+LHEVMEQQTLSIAKAGIICQLNARTSILAAANP +
Sbjct: 561 ALVLADNGVCCIDEFDKMNDSTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPAE 620

Query: 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL--------------- 508
           SQWN  K IIDN++LPHTLLSRFDLIFL+LDPQ E FD RLA HL               
Sbjct: 621 SQWNKRKNIIDNVQLPHTLLSRFDLIFLVLDPQDEVFDKRLASHLVSLYYVTRHEEEDTM 680

Query: 509 -DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
            D++VLRDYIAYA+EHLSPTLS+EA QRLIQ YVDMRK+GAGRG+ISAYPRQLESLIRLS
Sbjct: 681 FDMSVLRDYIAYAREHLSPTLSDEAQQRLIQAYVDMRKVGAGRGQISAYPRQLESLIRLS 740

Query: 568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
           EAHAK+R S  VE++DV+EAWRLHREALKQSATDPLSGKIDV ILTTG+S+AAR+++ +L
Sbjct: 741 EAHAKVRLSNEVELRDVEEAWRLHREALKQSATDPLSGKIDVGILTTGLSTAARKKRADL 800

Query: 628 TAALKKLVILLGPSVTVTQQKLIMDLK-GALVL 659
            AA+K+ +   G   TV  QKL  ++K G+ +L
Sbjct: 801 VAAIKENLKKKGKVPTVPYQKLFKEIKEGSQIL 833

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195332135|ref|XP_002032754.1| GM20786 [Drosophila sechellia] gi|194124724|gb|EDW46767.1| GM20786 [Drosophila sechellia]

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 246/327 (75%), Positives = 283/327 (86%), Gaps = 16/327 (4%)

Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
           +EI++LLCGDPGTSKSQ+L YV++LVPRSQYTSG+GSSAVGLTAY+TKDPETRQ+VLQTG
Sbjct: 504 SEIHLLLCGDPGTSKSQMLQYVFNLVPRSQYTSGRGSSAVGLTAYVTKDPETRQLVLQTG 563

Query: 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
           ALVLAD+GVCCIDEFDKM+D+TRS+LHEVMEQQTLSIAKAGIICQLNARTSILAAANP +
Sbjct: 564 ALVLADNGVCCIDEFDKMNDSTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPAE 623

Query: 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL--------------- 508
           SQWN  K IIDN++LPHTLLSRFDLIFL+LDPQ E FD RLA HL               
Sbjct: 624 SQWNKRKNIIDNVQLPHTLLSRFDLIFLVLDPQDEIFDKRLASHLVSLYYVTRHEEEDTM 683

Query: 509 -DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
            D++VLRDYIAYA+EHLSPTLS+EA QRLIQ YVDMRK+GAGRG+ISAYPRQLESLIRLS
Sbjct: 684 FDMSVLRDYIAYAREHLSPTLSDEAQQRLIQAYVDMRKVGAGRGQISAYPRQLESLIRLS 743

Query: 568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
           EAHAK+R S  VE+ DV+EAWRLHREALKQSATDPLSGKIDV ILTTG+S+AAR+++ +L
Sbjct: 744 EAHAKVRLSNQVELLDVEEAWRLHREALKQSATDPLSGKIDVGILTTGLSTAARKKRADL 803

Query: 628 TAALKKLVILLGPSVTVTQQKLIMDLK 654
            AA+K+ +   G  +TV  QKL  D+K
Sbjct: 804 VAAIKENLKKKGKVLTVPYQKLFNDIK 830

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17137242|ref|NP_477185.1| disc proliferation abnormal [Drosophila melanogaster] gi|17380470|sp|Q26454.2|MCM4_DROME RecName: Full=DNA replication licensing factor MCM4; AltName: Full=Protein disc proliferation abnormal gi|7304207|gb|AAF59242.1| disc proliferation abnormal [Drosophila melanogaster]

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 246/327 (75%), Positives = 283/327 (86%), Gaps = 16/327 (4%)

Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
           +EI++LLCGDPGTSKSQ+L YV++LVPRSQYTSG+GSSAVGLTAY+TKDPETRQ+VLQTG
Sbjct: 504 SEIHLLLCGDPGTSKSQMLQYVFNLVPRSQYTSGRGSSAVGLTAYVTKDPETRQLVLQTG 563

Query: 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
           ALVLAD+GVCCIDEFDKM+D+TRS+LHEVMEQQTLSIAKAGIICQLNARTSILAAANP +
Sbjct: 564 ALVLADNGVCCIDEFDKMNDSTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPAE 623

Query: 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL--------------- 508
           SQWN  K IIDN++LPHTLLSRFDLIFL+LDPQ E FD RLA HL               
Sbjct: 624 SQWNKRKNIIDNVQLPHTLLSRFDLIFLVLDPQDEIFDKRLASHLVSLYYVTRHEEEDTM 683

Query: 509 -DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
            D++VLRDYIAYA+EHLSPTLS+EA QRLIQ YVDMRK+GAGRG+ISAYPRQLESLIRLS
Sbjct: 684 FDMSVLRDYIAYAREHLSPTLSDEAQQRLIQAYVDMRKVGAGRGQISAYPRQLESLIRLS 743

Query: 568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
           EAHAK+R S  VE+ DV+EAWRLHREALKQSATDPLSGKIDV ILTTG+S+AAR+++ +L
Sbjct: 744 EAHAKVRLSNQVELLDVEEAWRLHREALKQSATDPLSGKIDVGILTTGLSTAARKKRADL 803

Query: 628 TAALKKLVILLGPSVTVTQQKLIMDLK 654
            AA+K+ +   G  +TV  QKL  D+K
Sbjct: 804 VAAIKENLKKKGKVLTVPYQKLFSDIK 830

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	720
FB|FBgn0015929	866	dpa "disc proliferation abnorm	0.437	0.363	0.709	7.7e-208
UNIPROTKB|E1C2U4	859	MCM4 "Uncharacterized protein"	0.431	0.362	0.678	5.4e-184
ZFIN|ZDB-GENE-030131-9544	845	mcm4 "MCM4 minichromosome main	0.433	0.369	0.670	3.8e-181
UNIPROTKB|G3V681	862	Mcm4 "RCG36531, isoform CRA_b"	0.433	0.361	0.655	1.3e-176
UNIPROTKB|Q6GL41	863	mcm4 "DNA replication licensin	0.451	0.376	0.646	3e-170
UNIPROTKB|P30664	863	mcm4-b "DNA replication licens	0.451	0.376	0.640	1e-169
UNIPROTKB|F1RSE7	836	MCM4 "Uncharacterized protein"	0.433	0.373	0.664	1.2e-169
UNIPROTKB|Q5XK83	858	mcm4-a "DNA replication licens	0.451	0.378	0.643	2.1e-169
UNIPROTKB|E2QSM6	866	MCM4 "Uncharacterized protein"	0.433	0.360	0.661	1.3e-167
UNIPROTKB|F6V1U9	863	MCM4 "Uncharacterized protein"	0.433	0.361	0.661	1.3e-167

FB|FBgn0015929 dpa "disc proliferation abnormal" [Drosophila melanogaster (taxid:7227)]

 Score = 1161 (413.8 bits), Expect = 7.7e-208, Sum P(3) = 7.7e-208
 Identities = 235/331 (70%), Positives = 271/331 (81%)

Query:   340 QETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMV 399
             Q   +EI++LLCGDPGTSKSQ+L YV++LVPRSQYTSG+GSSAVGLTAY+TKDPETRQ+V
Sbjct:   500 QNFRSEIHLLLCGDPGTSKSQMLQYVFNLVPRSQYTSGRGSSAVGLTAYVTKDPETRQLV 559

Query:   400 LQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAA 459
             LQTGALVLAD+GVCCIDEFDKM+D+TRS+LHEVMEQQTLSIAKAGIICQLNARTSILAAA
Sbjct:   560 LQTGALVLADNGVCCIDEFDKMNDSTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAA 619

Query:   460 NPCDSQWNTSKTIIDNIRLPHTXXXXXXXXXXXXXPQSEQFDARLARHL----------- 508
             NP +SQWN  K IIDN++LPHT             PQ E FD RLA HL           
Sbjct:   620 NPAESQWNKRKNIIDNVQLPHTLLSRFDLIFLVLDPQDEIFDKRLASHLVSLYYVTRHEE 679

Query:   509 -----DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESL 563
                  D++VLRDYIAYA+EHLSPTLS+EA QRLIQ YVDMRK+GAGRG+ISAYPRQLESL
Sbjct:   680 EDTMFDMSVLRDYIAYAREHLSPTLSDEAQQRLIQAYVDMRKVGAGRGQISAYPRQLESL 739

Query:   564 IRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQR 623
             IRLSEAHAK+R S  VE+ DV+EAWRLHREALKQSATDPLSGKIDV ILTTG+S+AAR++
Sbjct:   740 IRLSEAHAKVRLSNQVELLDVEEAWRLHREALKQSATDPLSGKIDVGILTTGLSTAARKK 799

Query:   624 QLELTAALKKLVILLGPSVTVTQQKLIMDLK 654
             + +L AA+K+ +   G  +TV  QKL  D+K
Sbjct:   800 RADLVAAIKENLKKKGKVLTVPYQKLFSDIK 830

GO:0006260 "DNA replication" evidence=ISS;IMP;NAS;TAS

GO:0042023 "DNA endoreduplication" evidence=NAS

GO:0003677 "DNA binding" evidence=IEA;NAS

GO:0005634 "nucleus" evidence=NAS

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0042555 "MCM complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043138 "3'-5' DNA helicase activity" evidence=IDA

UNIPROTKB|E1C2U4 MCM4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1101 (392.6 bits), Expect = 5.4e-184, Sum P(3) = 5.4e-184
 Identities = 222/327 (67%), Positives = 263/327 (80%)

Query:   344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
             AEINILLCGDPGTSKSQLL YVY+LVPR QYTSGKGSSAVGLTAY+ KDPETRQ+VLQTG
Sbjct:   498 AEINILLCGDPGTSKSQLLQYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTG 557

Query:   404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
             ALVL+D+G+CCIDEFDKM+++TRS+LHEVMEQQTLSIAKAGIICQLNARTS+LAAANP +
Sbjct:   558 ALVLSDNGICCIDEFDKMNESTRSVLHEVMEQQTLSIAKAGIICQLNARTSVLAAANPIE 617

Query:   464 SQWNTSKTIIDNIRLPHTXXXXXXXXXXXXXPQSEQFDARLARHL--------------- 508
             SQWN  KT I+NI+LPHT             P+ E +D RLARHL               
Sbjct:   618 SQWNPKKTTIENIQLPHTLLSRFDLIFLMLDPRDEAYDRRLARHLVSLYYQSEEKLEEEY 677

Query:   509 -DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
              D+ VLRDYIA+A+ +++P LSEEASQ LIQ YVDMRK+G+GRG +SAYPRQLESLIRL+
Sbjct:   678 MDMAVLRDYIAFARGYINPRLSEEASQALIQAYVDMRKIGSGRGMVSAYPRQLESLIRLA 737

Query:   568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
             EAHAK+R+SE VE  DV+EA RLHREALKQSATDP +G +D+SILTTG+S+ AR+R+ EL
Sbjct:   738 EAHAKVRFSEKVETIDVEEAKRLHREALKQSATDPRTGIVDISILTTGMSTTARKRKEEL 797

Query:   628 TAALKKLVILLGPSVTVTQQKLIMDLK 654
               ALKKL+   G + T+  Q+L  DL+
Sbjct:   798 AQALKKLIQSKGKTPTLKYQQLFEDLR 824

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006268 "DNA unwinding involved in replication" evidence=IEA

GO:0042555 "MCM complex" evidence=IEA

ZFIN|ZDB-GENE-030131-9544 mcm4 "MCM4 minichromosome maintenance deficient 4, mitotin (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 1084 (386.6 bits), Expect = 3.8e-181, Sum P(3) = 3.8e-181
 Identities = 220/328 (67%), Positives = 258/328 (78%)

Query:   344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
             AE+NILLCGDPGTSKSQLL YVY+LVPR QYTSGKGSSAVGLTAY+ KDPETRQ+VLQTG
Sbjct:   484 AEVNILLCGDPGTSKSQLLQYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTG 543

Query:   404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
             ALVL+D+G+CCIDEFDKMSD TRS+LHEVMEQQTLSIAKAGIICQLNARTSILAAANP +
Sbjct:   544 ALVLSDNGICCIDEFDKMSDNTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPVE 603

Query:   464 SQWNTSKTIIDNIRLPHTXXXXXXXXXXXXXPQSEQFDARLARHL--------------- 508
             SQWN  KT I+NI+LPHT             PQ E +D RLA HL               
Sbjct:   604 SQWNPKKTTIENIQLPHTLLSRFDLIFLMLDPQDEAYDRRLAHHLVSLYYQSEEQIEEEH 663

Query:   509 -DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
              D+ VL+DYIA+A+  + P LSEEASQ LI+ YVDMRK+G+GRG +SAYPRQLESLIRL+
Sbjct:   664 LDMAVLKDYIAFARTTVHPRLSEEASQALIEAYVDMRKIGSGRGMVSAYPRQLESLIRLA 723

Query:   568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
             EAHAK+R+S  VE  DV+EA RLHREALKQSATDP +G +D+SILTTG+S+ AR+R+ E+
Sbjct:   724 EAHAKVRFSGKVETIDVEEAKRLHREALKQSATDPRTGFVDISILTTGMSATARKRKEEV 783

Query:   628 TAALKKLVILLGPSVTVTQQKLIMDLKG 655
               ALKKL+   G +  +  Q+L  DL+G
Sbjct:   784 AQALKKLIQSKGKTPAMKYQQLFDDLRG 811

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0042555 "MCM complex" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0003678 "DNA helicase activity" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0003682 "chromatin binding" evidence=IDA

UNIPROTKB|G3V681 Mcm4 "RCG36531, isoform CRA_b" [Rattus norvegicus (taxid:10116)]

 Score = 1077 (384.2 bits), Expect = 1.3e-176, Sum P(3) = 1.3e-176
 Identities = 215/328 (65%), Positives = 259/328 (78%)

Query:   344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
             AEINILLCGDPGTSKSQLL YVY+LVPR QYTSGKGSSAVGLTAY+ KDPETRQ+VLQTG
Sbjct:   501 AEINILLCGDPGTSKSQLLQYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTG 560

Query:   404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
             ALVL+D+G+CCIDEFDKM+++TRS+LHEVMEQQTLSIAKAGIICQLNARTS+LAAANP +
Sbjct:   561 ALVLSDNGICCIDEFDKMNESTRSVLHEVMEQQTLSIAKAGIICQLNARTSVLAAANPIE 620

Query:   464 SQWNTSKTIIDNIRLPHTXXXXXXXXXXXXXPQSEQFDARLARHL--------------- 508
             SQWN  KT I+NI+LPHT             PQ E +D RLA HL               
Sbjct:   621 SQWNPKKTTIENIQLPHTLLSRFDLIFLMLDPQDEAYDRRLAHHLVSLYYQSEEQVEQEF 680

Query:   509 -DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
              D+ VL+DYIAYA   + P LSEEASQ LI+ YV+MRK+G+ RG +SAYPRQLESLIRL+
Sbjct:   681 LDMAVLKDYIAYAHSTIMPRLSEEASQALIEAYVNMRKIGSSRGMVSAYPRQLESLIRLA 740

Query:   568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
             EAHAK+R+S+ VE  DV+EA RLHREALKQSATDP +G +D+SILTTG+S+ +R+R+ EL
Sbjct:   741 EAHAKVRFSDKVEAIDVEEAKRLHREALKQSATDPRTGIVDISILTTGMSATSRKRKEEL 800

Query:   628 TAALKKLVILLGPSVTVTQQKLIMDLKG 655
               AL+KL++  G +  +  Q+L  D++G
Sbjct:   801 AEALRKLILSKGKTPALKYQQLFEDIRG 828

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006268 "DNA unwinding involved in replication" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0042555 "MCM complex" evidence=IEA

UNIPROTKB|Q6GL41 mcm4 "DNA replication licensing factor mcm4" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 1090 (388.8 bits), Expect = 3.0e-170, Sum P(2) = 3.0e-170
 Identities = 223/345 (64%), Positives = 267/345 (77%)

Query:   344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
             AE+NILLCGDPGTSKSQLL YVY+LVPR QYTSGKGSSAVGLTAY+ KDPETRQ+VLQTG
Sbjct:   502 AEVNILLCGDPGTSKSQLLQYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTG 561

Query:   404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
             ALVL+D+G+CCIDEFDKM+++TRS+LHEVMEQQTLSIAKAGIICQLNARTS+LAAANP +
Sbjct:   562 ALVLSDNGICCIDEFDKMNESTRSVLHEVMEQQTLSIAKAGIICQLNARTSVLAAANPVE 621

Query:   464 SQWNTSKTIIDNIRLPHTXXXXXXXXXXXXXPQSEQFDARLARHL--------------- 508
             SQWN  KT I+NI+LPHT             PQ E +D RLA HL               
Sbjct:   622 SQWNPKKTTIENIQLPHTLLSRFDLIFLMLDPQDETYDRRLAHHLVALYYQSEEQMKEEH 681

Query:   509 -DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
              D+ VL+DYIAYA+ +++P L EEASQ LI+ YVDMRK+G+GRG +SAYPRQLESLIRLS
Sbjct:   682 LDMAVLKDYIAYARTYVNPRLGEEASQALIEAYVDMRKIGSGRGMVSAYPRQLESLIRLS 741

Query:   568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
             EAHAK+R+S  VE  DV+EA RLHREALKQSATDP +G +D+SILTTG+S+ AR+R+ EL
Sbjct:   742 EAHAKVRFSSKVETIDVEEAKRLHREALKQSATDPRTGIVDISILTTGMSATARKRKEEL 801

Query:   628 TAALKKLVILLGPSVTVTQQKLIMDLKGALVLADSGVCCIDEFDK 672
                LKKL+   G +  +  Q+L  DL+G    +D+ V   D FD+
Sbjct:   802 AQVLKKLIQSKGKTPALKYQQLFEDLRGQ---SDAAVTK-DMFDE 842

GO:0000785 "chromatin" evidence=ISS

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0006268 "DNA unwinding involved in replication" evidence=ISS

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=ISS

GO:0042555 "MCM complex" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

UNIPROTKB|P30664 mcm4-b "DNA replication licensing factor mcm4-B" [Xenopus laevis (taxid:8355)]

 Score = 1083 (386.3 bits), Expect = 1.0e-169, Sum P(2) = 1.0e-169
 Identities = 221/345 (64%), Positives = 267/345 (77%)

Query:   344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
             AE+NILLCGDPGTSKSQLL YV++LVPR QYTSGKGSSAVGLTAY+ KDPETRQ+VLQTG
Sbjct:   502 AEVNILLCGDPGTSKSQLLQYVFNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTG 561

Query:   404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
             ALVL+D+G+CCIDEFDKM+++TRS+LHEVMEQQTLSIAKAGIICQLNARTS+LAAANP +
Sbjct:   562 ALVLSDNGICCIDEFDKMNESTRSVLHEVMEQQTLSIAKAGIICQLNARTSVLAAANPVE 621

Query:   464 SQWNTSKTIIDNIRLPHTXXXXXXXXXXXXXPQSEQFDARLARHL--------------- 508
             SQWN  KT I+NI+LPHT             PQ E +D RLA HL               
Sbjct:   622 SQWNPKKTTIENIQLPHTLLSRFDLIFLMLDPQDEAYDRRLAHHLVALYYQSEEQMKEEH 681

Query:   509 -DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
              D+ VL+DYIAYA+ +++P LSEEASQ LI+ YV MRK+G+GRG +SAYPRQLESLIRLS
Sbjct:   682 LDMAVLKDYIAYARTYVNPRLSEEASQALIEAYVSMRKIGSGRGMVSAYPRQLESLIRLS 741

Query:   568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
             EAHAK+R+S  VE  DV+EA RLHREALKQSATDP +G +D+SILTTG+S+ AR+R+ EL
Sbjct:   742 EAHAKVRFSNKVETIDVEEAKRLHREALKQSATDPRTGIVDISILTTGMSATARKRKEEL 801

Query:   628 TAALKKLVILLGPSVTVTQQKLIMDLKGALVLADSGVCCIDEFDK 672
                LKKL+   G +  +  Q+L  DL+G    +D+ +   D FD+
Sbjct:   802 AQVLKKLIQSKGKTPALKYQQLFEDLRGQ---SDAAITK-DMFDE 842

GO:0000785 "chromatin" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0006268 "DNA unwinding involved in replication" evidence=IDA

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IDA

GO:0042555 "MCM complex" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

UNIPROTKB|F1RSE7 MCM4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1086 (387.4 bits), Expect = 1.2e-169, Sum P(3) = 1.2e-169
 Identities = 218/328 (66%), Positives = 259/328 (78%)

Query:   344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
             AEINILLCGDPGTSKSQLL YVY+LVPR QYTSGKGSSAVGLTAY+TKDPETRQ+VLQTG
Sbjct:   475 AEINILLCGDPGTSKSQLLQYVYNLVPRGQYTSGKGSSAVGLTAYVTKDPETRQLVLQTG 534

Query:   404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
             ALVL+D+G+CCIDEFDKM+++TRS+LHEVMEQQTLSIAKAGIICQLNARTSILAAANP +
Sbjct:   535 ALVLSDNGICCIDEFDKMNESTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPIE 594

Query:   464 SQWNTSKTIIDNIRLPHTXXXXXXXXXXXXXPQSEQFDARLARHL--------------- 508
             SQWN  KT I+NI+LPHT             PQ E +D RLA HL               
Sbjct:   595 SQWNPKKTTIENIQLPHTLLSRFDLIFLMLDPQDEAYDRRLAHHLVSLYYQSEEQAQEEV 654

Query:   509 -DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
              D+ VLRDYIAYA   + P LS++ASQ LI+ YVDMRK+G+ RG +SAYPRQLESLIRL+
Sbjct:   655 MDMAVLRDYIAYAHSTVLPRLSQDASQALIEAYVDMRKIGSSRGMVSAYPRQLESLIRLA 714

Query:   568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
             EAHAK+R+S  VE  DV+EA RLHREALKQSATDP +G +D+SILTTG+S+ +R+R+ EL
Sbjct:   715 EAHAKVRFSNKVEAVDVEEAKRLHREALKQSATDPRTGIVDISILTTGMSATSRKRKEEL 774

Query:   628 TAALKKLVILLGPSVTVTQQKLIMDLKG 655
               ALKKL++  G +  +  Q+L  D++G
Sbjct:   775 AEALKKLILSKGKTPALKYQQLFEDIRG 802

GO:0042555 "MCM complex" evidence=IEA

GO:0006268 "DNA unwinding involved in replication" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

UNIPROTKB|Q5XK83 mcm4-a "DNA replication licensing factor mcm4-A" [Xenopus laevis (taxid:8355)]

 Score = 1087 (387.7 bits), Expect = 2.1e-169, Sum P(2) = 2.1e-169
 Identities = 222/345 (64%), Positives = 266/345 (77%)

Query:   344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
             AE+NILLCGDPGTSKSQLL YVY+LVPR QYTSGKGSSAVGLTAY+ KDPETRQ+VLQTG
Sbjct:   497 AEVNILLCGDPGTSKSQLLQYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTG 556

Query:   404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
             ALVL+D+G+CCIDEFDKM+++TRS+LHEVMEQQTLSIAKAGIICQLNARTS+LAAANP +
Sbjct:   557 ALVLSDNGICCIDEFDKMNESTRSVLHEVMEQQTLSIAKAGIICQLNARTSVLAAANPVE 616

Query:   464 SQWNTSKTIIDNIRLPHTXXXXXXXXXXXXXPQSEQFDARLARHL--------------- 508
             SQWN  KT I+NI+LPHT             PQ E +D RLA HL               
Sbjct:   617 SQWNPKKTTIENIQLPHTLLSRFDLIFLMLDPQDETYDRRLAHHLVALYYQSEEQLKEEH 676

Query:   509 -DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
              D+ VL+DYIAYA+ +++P L EEASQ LI+ YVDMRK+G+GRG +SAYPRQLESLIRLS
Sbjct:   677 LDMAVLKDYIAYARTYVNPRLGEEASQALIEAYVDMRKIGSGRGMVSAYPRQLESLIRLS 736

Query:   568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
             EAHAK+R+S  VE  DV+EA RLHREALKQSATDP +G +D+SILTTG+S+ AR+R+ EL
Sbjct:   737 EAHAKVRFSSKVETIDVEEAKRLHREALKQSATDPRTGIVDISILTTGMSATARKRKEEL 796

Query:   628 TAALKKLVILLGPSVTVTQQKLIMDLKGALVLADSGVCCIDEFDK 672
                LKKL+   G +     Q+L  DL+G    +D+ +   D FD+
Sbjct:   797 AQVLKKLIQSKGKTPAFKYQQLFEDLRGQ---SDAAITK-DMFDE 837

GO:0000785 "chromatin" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0006268 "DNA unwinding involved in replication" evidence=ISS

GO:0030174 "regulation of DNA-dependent DNA replication initiation" evidence=IDA

GO:0042555 "MCM complex" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0016887 "ATPase activity" evidence=ISS

UNIPROTKB|E2QSM6 MCM4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1081 (385.6 bits), Expect = 1.3e-167, Sum P(2) = 1.3e-167
 Identities = 217/328 (66%), Positives = 258/328 (78%)

Query:   344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
             AEINILLCGDPGTSKSQLL YVY+LVPR QYTSGKGSSAVGLTAY+ KDPETRQ+VLQTG
Sbjct:   505 AEINILLCGDPGTSKSQLLQYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTG 564

Query:   404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
             ALVL+D+G+CCIDEFDKM+++TRS+LHEVMEQQTLSIAKAGIICQLNARTSILAAANP +
Sbjct:   565 ALVLSDNGICCIDEFDKMNESTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPVE 624

Query:   464 SQWNTSKTIIDNIRLPHTXXXXXXXXXXXXXPQSEQFDARLARHL--------------- 508
             SQWN  KT I+NI+LPHT             PQ E +D RLA HL               
Sbjct:   625 SQWNPKKTTIENIQLPHTLLSRFDLIFLMLDPQDEAYDRRLAHHLVALYYRSEEQMEEEF 684

Query:   509 -DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
              D+ VL+DYIAYA   + P LS+EASQ LI+ YVDMRK+G+ RG +SAYPRQLESLIRL+
Sbjct:   685 MDMAVLKDYIAYAHSMVMPRLSQEASQALIEAYVDMRKIGSSRGMVSAYPRQLESLIRLA 744

Query:   568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
             EAHAK+R+S  VE  DV+EA RLHREALKQSATDP +G +D+SILTTG+S+ +R+R+ EL
Sbjct:   745 EAHAKVRFSSKVEAVDVEEAKRLHREALKQSATDPRTGIVDISILTTGMSATSRKRKEEL 804

Query:   628 TAALKKLVILLGPSVTVTQQKLIMDLKG 655
               ALKKL++  G +  +  Q+L  D++G
Sbjct:   805 AEALKKLILSKGKTPALKYQQLFEDIRG 832

GO:0042555 "MCM complex" evidence=IEA

GO:0006268 "DNA unwinding involved in replication" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

UNIPROTKB|F6V1U9 MCM4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1081 (385.6 bits), Expect = 1.3e-167, Sum P(2) = 1.3e-167
 Identities = 217/328 (66%), Positives = 258/328 (78%)

Query:   344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
             AEINILLCGDPGTSKSQLL YVY+LVPR QYTSGKGSSAVGLTAY+ KDPETRQ+VLQTG
Sbjct:   502 AEINILLCGDPGTSKSQLLQYVYNLVPRGQYTSGKGSSAVGLTAYVMKDPETRQLVLQTG 561

Query:   404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
             ALVL+D+G+CCIDEFDKM+++TRS+LHEVMEQQTLSIAKAGIICQLNARTSILAAANP +
Sbjct:   562 ALVLSDNGICCIDEFDKMNESTRSVLHEVMEQQTLSIAKAGIICQLNARTSILAAANPVE 621

Query:   464 SQWNTSKTIIDNIRLPHTXXXXXXXXXXXXXPQSEQFDARLARHL--------------- 508
             SQWN  KT I+NI+LPHT             PQ E +D RLA HL               
Sbjct:   622 SQWNPKKTTIENIQLPHTLLSRFDLIFLMLDPQDEAYDRRLAHHLVALYYRSEEQMEEEF 681

Query:   509 -DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS 567
              D+ VL+DYIAYA   + P LS+EASQ LI+ YVDMRK+G+ RG +SAYPRQLESLIRL+
Sbjct:   682 MDMAVLKDYIAYAHSMVMPRLSQEASQALIEAYVDMRKIGSSRGMVSAYPRQLESLIRLA 741

Query:   568 EAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLEL 627
             EAHAK+R+S  VE  DV+EA RLHREALKQSATDP +G +D+SILTTG+S+ +R+R+ EL
Sbjct:   742 EAHAKVRFSSKVEAVDVEEAKRLHREALKQSATDPRTGIVDISILTTGMSATSRKRKEEL 801

Query:   628 TAALKKLVILLGPSVTVTQQKLIMDLKG 655
               ALKKL++  G +  +  Q+L  D++G
Sbjct:   802 AEALKKLILSKGKTPALKYQQLFEDIRG 829

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0042555 "MCM complex" evidence=IEA

GO:0006270 "DNA replication initiation" evidence=IEA

GO:0003678 "DNA helicase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P33991	MCM4_HUMAN	3, ., 6, ., 4, ., 1, 2	0.7012	0.4333	0.3615	yes	N/A
Q26454	MCM4_DROME	3, ., 6, ., 4, ., 1, 2	0.7522	0.4319	0.3591	yes	N/A
P49717	MCM4_MOUSE	3, ., 6, ., 4, ., 1, 2	0.6920	0.4333	0.3619	yes	N/A
P30665	MCM4_YEAST	3, ., 6, ., 4, ., 1, 2	0.5485	0.4125	0.3183	yes	N/A
Q6GL41	MCM4_XENTR	3, ., 6, ., 4, ., 1, 2	0.6520	0.4694	0.3916	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	720
pfam00493	327	pfam00493, MCM, MCM2/3/5 family	1e-142
smart00350	509	smart00350, MCM, minichromosome maintenance protei	1e-135
COG1241	682	COG1241, MCM2, Predicted ATPase involved in replic	1e-118
PTZ00111	915	PTZ00111, PTZ00111, DNA replication licensing fact	2e-80
smart00350	509	smart00350, MCM, minichromosome maintenance protei	2e-39
pfam00493	327	pfam00493, MCM, MCM2/3/5 family	9e-38
smart00350	509	smart00350, MCM, minichromosome maintenance protei	4e-35
COG1241	682	COG1241, MCM2, Predicted ATPase involved in replic	7e-34
COG1241	682	COG1241, MCM2, Predicted ATPase involved in replic	2e-27
COG1241	682	COG1241, MCM2, Predicted ATPase involved in replic	2e-27
PTZ00111	915	PTZ00111, PTZ00111, DNA replication licensing fact	6e-26
smart00350	509	smart00350, MCM, minichromosome maintenance protei	1e-25
PTZ00111	915	PTZ00111, PTZ00111, DNA replication licensing fact	5e-24
PTZ00111	915	PTZ00111, PTZ00111, DNA replication licensing fact	4e-19
pfam00493	327	pfam00493, MCM, MCM2/3/5 family	7e-16
COG0714	329	COG0714, COG0714, MoxR-like ATPases [General funct	6e-11
pfam07728	135	pfam07728, AAA_5, AAA domain (dynein-related subfa	1e-05
COG1239	423	COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme	7e-05
TIGR02031	589	TIGR02031, BchD-ChlD, magnesium chelatase ATPase s	1e-04

>gnl|CDD|215947 pfam00493, MCM, MCM2/3/5 family

 Score =  418 bits (1076), Expect = e-142
 Identities = 151/271 (55%), Positives = 191/271 (70%), Gaps = 19/271 (7%)

Query: 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGA 404
           +IN+LL GDPGT+KSQLL YV  L PR+ YTSGKGSSA GLTA + +DP+T +  L+ GA
Sbjct: 57  DINVLLVGDPGTAKSQLLKYVAKLAPRAVYTSGKGSSAAGLTAAVVRDPDTGEWTLEAGA 116

Query: 405 LVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDS 464
           LVLAD GVCCIDEFDKM++  R  +HE MEQQT+SIAKAGI+  LNAR S+LAAANP   
Sbjct: 117 LVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGIVATLNARCSVLAAANPIFG 176

Query: 465 QWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARH----------------- 507
           +++  K++ +NI LP  LLSRFDLIF+LLD   E+ D  LA+H                 
Sbjct: 177 RYDPKKSVAENINLPPPLLSRFDLIFVLLDKPDEERDEELAKHIVDLHRASDEEEIETED 236

Query: 508 -LDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLG-AGRGRISAYPRQLESLIR 565
            +D  +LR YIAYA+E++ P LS+EA ++L+  YV++RK     RG I    RQLESLIR
Sbjct: 237 EIDPELLRKYIAYARENIKPKLSDEAREKLVNWYVELRKESEGSRGSIPITVRQLESLIR 296

Query: 566 LSEAHAKMRYSETVEVQDVDEAWRLHREALK 596
           LSEAHA++R SE V  +DV+EA RL  E+LK
Sbjct: 297 LSEAHARLRLSEEVTEEDVEEAIRLILESLK 327

Length = 327

>gnl|CDD|214631 smart00350, MCM, minichromosome maintenance proteins

 Score =  407 bits (1049), Expect = e-135
 Identities = 154/275 (56%), Positives = 191/275 (69%), Gaps = 22/275 (8%)

Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
            +INILLCGDPGT+KSQLL YV    PR+ YT+GKGSSAVGLTA +T+DPETR+  L+ G
Sbjct: 235 GDINILLCGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEAG 294

Query: 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
           ALVLAD+GVCCIDEFDKM D+ R+ +HE MEQQT+SIAKAGI   LNAR S+LAAANP  
Sbjct: 295 ALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIG 354

Query: 464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARH---------------- 507
            +++   T  +NI LP  +LSRFDL+F++LD   E+ D  LA+H                
Sbjct: 355 GRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEEDEAF 414

Query: 508 ---LDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGA---GRGRISAYPRQLE 561
              L    LR YIAYA+E + P LSEEA+ +L++ YVD+RK  +    R  I    RQLE
Sbjct: 415 EPPLSQEKLRKYIAYAREKIKPKLSEEAADKLVKAYVDLRKEDSQTESRSSIPITVRQLE 474

Query: 562 SLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALK 596
           S+IRLSEAHAKMR S+ VE  DV+EA RL RE++ 
Sbjct: 475 SIIRLSEAHAKMRLSDVVEEADVEEAIRLLRESII 509

Length = 509

>gnl|CDD|224162 COG1241, MCM2, Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

 Score =  370 bits (953), Expect = e-118
 Identities = 164/331 (49%), Positives = 207/331 (62%), Gaps = 27/331 (8%)

Query: 332 TDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITK 391
             K L        +I+ILL GDPGT+KSQLL YV  L PR  YTSGKGSSA GLTA + +
Sbjct: 306 VKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVR 365

Query: 392 DPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNA 451
           D  T + VL+ GALVLAD GVCCIDEFDKM++  R  +HE MEQQT+SIAKAGI   LNA
Sbjct: 366 DKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNA 425

Query: 452 RTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARH---- 507
           R S+LAAANP   +++  KT+ +NI LP  LLSRFDLIF+L D   E+ D  +A H    
Sbjct: 426 RCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDK 485

Query: 508 --------------------LDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLG 547
                                D  +LR YI+YA+++++P L+EEA + L   YV+MRK  
Sbjct: 486 HRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKS 545

Query: 548 AGRGRISAYP---RQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLS 604
           A        P   RQLES+IRL+EAHAKMR S+ VE +DVDEA RL   +LK  A DP  
Sbjct: 546 ALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFSLKTVAVDPEK 605

Query: 605 GKIDVSILTTGVSSAARQRQLELTAALKKLV 635
           GKID+ I+  G S + R +  ++   +K+LV
Sbjct: 606 GKIDIDIIEPGKSKSKRDKIEKVLDIIKELV 636

Length = 682

>gnl|CDD|173403 PTZ00111, PTZ00111, DNA replication licensing factor MCM4; Provisional

 Score =  274 bits (703), Expect = 2e-80
 Identities = 127/346 (36%), Positives = 187/346 (54%), Gaps = 66/346 (19%)

Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYIT-KDPETRQMVLQT 402
             IN+LLCGDPGT+KSQLL Y + L PRS YTSGK SS+VGLTA I   + +  + ++Q 
Sbjct: 491 GIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQP 550

Query: 403 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC 462
           GA+VLA+ GVCCIDE DK  + +R  L+EVMEQQT++IAKAGI+  L A T+ILA+ NP 
Sbjct: 551 GAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPI 610

Query: 463 DSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL-------------- 508
           +S++N +K +I+NI +  +L +RFDLI+L+LD   +  D  ++  +              
Sbjct: 611 NSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGN 670

Query: 509 ---------------------------DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYV 541
                                      D+ +LR YI +++ H  P LS+EA + + + YV
Sbjct: 671 DEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITREYV 730

Query: 542 DMRKLG------------------------AGRGRISAYPRQLESLIRLSEAHAKMRYSE 577
            MR+                          +G   I    R + S+IR+S + A+MR S 
Sbjct: 731 KMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLST 790

Query: 578 TVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQR 623
            V   D  +A ++ + +  QS  DP +GKID   L  G+++   Q+
Sbjct: 791 VVTPADALQAVQIVKSSTFQSLVDPTTGKIDFDQLHQGITTNKMQQ 836

Length = 915

>gnl|CDD|214631 smart00350, MCM, minichromosome maintenance proteins

 Score =  152 bits (386), Expect = 2e-39
 Identities = 59/140 (42%), Positives = 82/140 (58%), Gaps = 5/140 (3%)

Query: 1   MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYK--THIDV 58
           +P GQ P SV +    DLVD  +PGDRV VTGIYR VP     ++ +VK +    T+I+ 
Sbjct: 97  VPVGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNVP--YGFKLNTVKGLPVFATYIEA 154

Query: 59  VHFRKIDATRLYKQDEK-EHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKG 117
            H RK+D  R ++           E  E ++ LS+ PDIYERL  ++ PSIYG+ED+KK 
Sbjct: 155 NHVRKLDYKRSFEDSSFSVQSLSDEEEEEIRKLSKDPDIYERLARSLAPSIYGHEDIKKA 214

Query: 118 IMLQMFGGTKKTFDETISDR 137
           I+L +FGG  K   + +  R
Sbjct: 215 ILLLLFGGVHKNLPDGMKIR 234

Length = 509

>gnl|CDD|215947 pfam00493, MCM, MCM2/3/5 family

 Score =  143 bits (363), Expect = 9e-38
 Identities = 56/112 (50%), Positives = 72/112 (64%), Gaps = 18/112 (16%)

Query: 610 SILTTGV-SSAARQRQLELTAALKKLVILLGPSVTVTQQKLIMDLK-GALVLADSGVCCI 667
           ++ T+G  SSAA      LTAA+ +           T +     L+ GALVLAD GVCCI
Sbjct: 84  AVYTSGKGSSAA-----GLTAAVVR--------DPDTGE---WTLEAGALVLADGGVCCI 127

Query: 668 DEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWN 719
           DEFDKM++  R  +HE MEQQT+SIAKAGI+  LNAR S+LAAANP   +++
Sbjct: 128 DEFDKMNEEDRVAIHEAMEQQTISIAKAGIVATLNARCSVLAAANPIFGRYD 179

Length = 327

>gnl|CDD|214631 smart00350, MCM, minichromosome maintenance proteins

 Score =  139 bits (353), Expect = 4e-35
 Identities = 45/65 (69%), Positives = 54/65 (83%)

Query: 655 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC 714
           GALVLAD+GVCCIDEFDKM D+ R+ +HE MEQQT+SIAKAGI   LNAR S+LAAANP 
Sbjct: 294 GALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPI 353

Query: 715 DSQWN 719
             +++
Sbjct: 354 GGRYD 358

Length = 509

>gnl|CDD|224162 COG1241, MCM2, Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

 Score =  137 bits (348), Expect = 7e-34
 Identities = 53/137 (38%), Positives = 81/137 (59%), Gaps = 8/137 (5%)

Query: 1   MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVH 60
           +P G+ P S+ +   +DLVDS++PGDRV +TG+ R VP +     R    V++ +++   
Sbjct: 189 VPGGELPRSIEVILEDDLVDSVRPGDRVKITGVVRIVPSRSLSGRRK-GPVFEIYLEANS 247

Query: 61  FRKIDATRLYKQDEKEHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIML 120
             K+D         +E +   E  E +K L+++PDIY+ L  +I PSIYG+EDVKK I+L
Sbjct: 248 VEKLDK-------REEVEITEEDEEEIKELAKRPDIYDILIKSIAPSIYGHEDVKKAILL 300

Query: 121 QMFGGTKKTFDETISDR 137
           Q+FGG KK   +    R
Sbjct: 301 QLFGGVKKNLPDGTRIR 317

Length = 682

>gnl|CDD|224162 COG1241, MCM2, Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

 Score =  118 bits (297), Expect = 2e-27
 Identities = 44/59 (74%), Positives = 49/59 (83%)

Query: 655 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP 713
           GALVLAD GVCCIDEFDKM++  R  +HE MEQQT+SIAKAGI   LNAR S+LAAANP
Sbjct: 377 GALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANP 435

Length = 682

>gnl|CDD|224162 COG1241, MCM2, Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

 Score =  117 bits (296), Expect = 2e-27
 Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 6/183 (3%)

Query: 170 IRLRPDIRTDRRIRQIFSLEDP---VLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGV 226
            RLR          +   L+      L V+L+ L ++D +L   L+  P+E+IP+ +  +
Sbjct: 7   FRLRFKWEDILEYAENIILDKIINRSLEVDLSDLEEYDPELAGLLLENPEEIIPLFEKAL 66

Query: 227 NE-YFFERHPAAVLEHQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMR 285
           +E              +I VR  N     ++R L  E I +L+++ G+V R S + P ++
Sbjct: 67  DEIALLLFPEVDRSLKKIHVRFKNLPNRLSIRELRSEHIGKLVSVEGIVTRASEVRPRLK 126

Query: 286 EAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTN--HCFSLVHNRSHFTDKQLVRLQETP 343
           +A F C  C     VE    R+  P  C NC         LV  +S F D Q V++QE P
Sbjct: 127 KAVFECPKCGREVEVEQSEFRVEPPRECENCGKFGKGPLKLVPRKSEFIDFQKVKIQELP 186

Query: 344 AEI 346
             +
Sbjct: 187 ELV 189

Length = 682

>gnl|CDD|173403 PTZ00111, PTZ00111, DNA replication licensing factor MCM4; Provisional

 Score =  113 bits (285), Expect = 6e-26
 Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 6/129 (4%)

Query: 9   SVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDAT- 67
            + L  Y+DL+DS++ GDRVTV GI +  P++ +   R++KS+Y   ++V+H + I++T 
Sbjct: 347 VINLNLYDDLIDSVKTGDRVTVVGILKVTPIRTSTTRRTLKSLYTYFVNVIHVKVINSTN 406

Query: 68  -----RLYKQDEKEHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQM 122
                +  K    E+ F   +V  +  LSR P IY  L  +  PSI    +VK G++ Q+
Sbjct: 407 ANQPEKGLKYLGNENDFSDLQVYKILELSRNPMIYRILLDSFAPSIKARNNVKIGLLCQL 466

Query: 123 FGGTKKTFD 131
           F G K + D
Sbjct: 467 FSGNKNSSD 475

Length = 915

>gnl|CDD|214631 smart00350, MCM, minichromosome maintenance proteins

 Score =  111 bits (279), Expect = 1e-25
 Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 2/97 (2%)

Query: 252 KTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPT 311
           K  ++R L  + + +L+ I+G+V RTS + P+++ A F C  C  +   EI  GR  EPT
Sbjct: 1   KPSSIRELRADHLGKLVRISGIVTRTSGVRPKLKRASFTCEKCGATLGPEIQSGRETEPT 60

Query: 312 LCTN--CSTNHCFSLVHNRSHFTDKQLVRLQETPAEI 346
           +C    C +   FSL H RS F D Q ++LQE+P E+
Sbjct: 61  VCPPRECQSPTPFSLNHERSTFIDFQKIKLQESPEEV 97

Length = 509

>gnl|CDD|173403 PTZ00111, PTZ00111, DNA replication licensing factor MCM4; Provisional

 Score =  107 bits (269), Expect = 5e-24
 Identities = 50/110 (45%), Positives = 70/110 (63%), Gaps = 13/110 (11%)

Query: 610 SILTTGVSSAARQRQLELTAALKKLVILLGPSVTVTQQKLIMDLKGALVLADSGVCCIDE 669
           SI T+G SS++    + LTA++K            +     M   GA+VLA+ GVCCIDE
Sbjct: 519 SIYTSGKSSSS----VGLTASIK---------FNESDNGRAMIQPGAVVLANGGVCCIDE 565

Query: 670 FDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWN 719
            DK  + +R  L+EVMEQQT++IAKAGI+  L A T+ILA+ NP +S++N
Sbjct: 566 LDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYN 615

Length = 915

>gnl|CDD|173403 PTZ00111, PTZ00111, DNA replication licensing factor MCM4; Provisional

 Score = 92.4 bits (229), Expect = 4e-19
 Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 18/171 (10%)

Query: 195 VNLAHLAKFDSQLCQQLVCYPQEVIPILDMGV----NEYFFERHPAAVLEHQI---QVRP 247
           V+L H+  FD  L + LV +P + I  LD  +    NE   + +    LE+     + R 
Sbjct: 150 VDLMHVYSFDKVLYKLLVTFPADCIAELDKVLVKLFNELLSKHYSDLSLENNSFFPRARL 209

Query: 248 FNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCI-----------VCNY 296
            N   +  + +L P   D L+  +G V+R + I+PE+  A FRC             C  
Sbjct: 210 MNKPVSDCVGNLEPSMADSLVQFSGTVVRQTWIVPEITMACFRCRGQKKIGLNDYQPCTC 269

Query: 297 STTVEIDRGRIHEPTLCTNCSTNHCFSLVHNRSHFTDKQLVRLQETPAEIN 347
                + +G ++EP LC  C++ + F L HN   ++ K++V+L ++ + +N
Sbjct: 270 EHYEYVIQGEVNEPLLCNECNSKYTFELNHNMCVYSTKKIVKLLQSNSSLN 320

Length = 915

>gnl|CDD|215947 pfam00493, MCM, MCM2/3/5 family

 Score = 79.1 bits (196), Expect = 7e-16
 Identities = 27/55 (49%), Positives = 38/55 (69%)

Query: 83  RVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDR 137
             E ++ L++ PDIY++L  +I PSIYG+EDVKK I+LQ+FGG KK   +    R
Sbjct: 1   DEEEIRELAKDPDIYDKLARSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRLR 55

Length = 327

>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only]

 Score = 64.0 bits (156), Expect = 6e-11
 Identities = 61/276 (22%), Positives = 102/276 (36%), Gaps = 34/276 (12%)

Query: 344 AEINILLCGDPGTSKSQL---LSYVYDL-VPRSQYTSG-KGSSAVGLTAYITKDPETRQM 398
           A  ++LL G PG  K+ L   L+    L   R Q T     S  +G  AY     E  + 
Sbjct: 42  AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEF 101

Query: 399 VLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAA 458
               G L  A   +  +DE ++     ++ L E +E++ +++     I +L     ++A 
Sbjct: 102 RFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTI-RLPPPFIVIAT 160

Query: 459 ANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIA 518
            NP + +  T         LP  LL RF L   +  P SE+ +  +   +      D  +
Sbjct: 161 QNPGEYE-GTY-------PLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELDLES 212

Query: 519 YAQEHLSP-------------TLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR 565
             +  LS               +S+E    ++     +R+        S  PR   +L+ 
Sbjct: 213 LVKPVLSDEELLRLQKEVKKVPVSDEVIDYIVTLVAALREAPDVALGAS--PRASLALLA 270

Query: 566 LSEAHAKMRYSETVEVQDVDE----AWRLHREALKQ 597
              A A +   + V   DV      A   HR  L+ 
Sbjct: 271 ALRALALLDGRDAVIPDDVKALAEPALA-HRLILEL 305

Length = 329

>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily)

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 33/150 (22%), Positives = 59/150 (39%), Gaps = 25/150 (16%)

Query: 347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKD-------PETRQMV 399
            +LL G PGT KS+L   +      +   S +    V LT   T++        +     
Sbjct: 1   GVLLVGPPGTGKSELAERL------AAALSNRPVFYVQLTRDTTEEDLKGRRNIDPGGAS 54

Query: 400 LQTGALVLA--DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNAR-TSIL 456
              G LV A  +  +  +DE ++ +    + L  +++++ L + + G + +       ++
Sbjct: 55  WVDGPLVRAAREGEIAVLDEINRANPDVLNSLLSLLDERRLLLPEGGELVKAAPDGFRLI 114

Query: 457 AAANPCDSQWNTSKTIIDNIRLPHTLLSRF 486
           A  NP D   N          L   L SRF
Sbjct: 115 ATMNPLDRGLN---------ELSPALRSRF 135

This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135

>gnl|CDD|224160 COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism]

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 53/237 (22%), Positives = 84/237 (35%), Gaps = 44/237 (18%)

Query: 399 VLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAA 458
             Q G L  A+ G+  +DE + + D     L +V  +    + + GI  +  AR  ++  
Sbjct: 134 AFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGT 193

Query: 459 ANPCDSQWNTSKTIIDNIRLPHTLLSRFDL---IFLLLDPQ---------------SEQF 500
            NP + +          +R    LL RF L       LD +                E F
Sbjct: 194 MNPEEGE----------LRPQ--LLDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAF 241

Query: 501 DARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQL 560
             + A       LR  I  A+  LS    ++ ++  I        +   R  I       
Sbjct: 242 LEKYAD--AQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVV----- 294

Query: 561 ESLIRLSEAHAKMRYSETVEVQDVDEAWRL---HREALKQSATDPLSGKIDVSILTT 614
              +R ++A A +R    VE +D+ EA  L   HR   K      + G+ID   L  
Sbjct: 295 ---VRAAKALAALRGRTEVEEEDIREAAELALLHRRRRK-PFIRTVLGEIDADELEA 347

Length = 423

>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D

 Score = 45.2 bits (107), Expect = 1e-04
 Identities = 49/215 (22%), Positives = 82/215 (38%), Gaps = 34/215 (15%)

Query: 389 ITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQ 448
           + +     Q V Q G L  A  GV  +D  + + D   + L + +++  + + + GI   
Sbjct: 64  VEESLAGGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVV 123

Query: 449 LNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLA--- 505
             A+ +++A  +P +              LP  LL R  L   L D  S   D R+    
Sbjct: 124 HPAKFALIATYDPAEGG----------GGLPDHLLDRLALHVSLEDVAS--QDLRVEIVR 171

Query: 506 ----RHLDIT-----VLRDYIAYAQEHL-SPTLSEEASQRLIQTYVDMRKLGAGRGRISA 555
                 +        +LR  I  A+E L   T+S E  + L+ T      LG    R   
Sbjct: 172 RERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLT---AASLGISGHRADL 228

Query: 556 YPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL 590
           +       +R ++AHA +     V  +D+  A  L
Sbjct: 229 F------AVRAAKAHAALHGRTEVTEEDLKLAVEL 257

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 589

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	720
KOG0478|consensus	804		100.0
COG1241	682	MCM2 Predicted ATPase involved in replication cont	100.0
KOG0482|consensus	721		100.0
KOG0481|consensus	729		100.0
KOG0480|consensus	764		100.0
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	100.0
KOG0479|consensus	818		100.0
KOG0477|consensus	854		100.0
smart00350	509	MCM minichromosome maintenance proteins.	100.0
PF00493	331	MCM: MCM2/3/5 family This family extends the MCM d	100.0
KOG0482|consensus	721		100.0
KOG0481|consensus	729		100.0
COG1241	682	MCM2 Predicted ATPase involved in replication cont	100.0
KOG0477|consensus	854		100.0
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	100.0
KOG0478|consensus	804		100.0
KOG0479|consensus	818		100.0
KOG0480|consensus	764		99.95
smart00350	509	MCM minichromosome maintenance proteins.	99.95
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	99.92
COG0606	490	Predicted ATPase with chaperone activity [Posttran	99.92
PRK09862	506	putative ATP-dependent protease; Provisional	99.92
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	99.9
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	99.9
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	99.89
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	99.89
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	99.88
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	99.88
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	99.85
PRK13406	584	bchD magnesium chelatase subunit D; Provisional	99.83
PRK13531	498	regulatory ATPase RavA; Provisional	99.79
COG0714	329	MoxR-like ATPases [General function prediction onl	99.76
PF07726	131	AAA_3: ATPase family associated with various cellu	99.76
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	99.73
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	99.7
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.69
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	99.66
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.66
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	99.57
PF00493	331	MCM: MCM2/3/5 family This family extends the MCM d	99.56
COG3604	550	FhlA Transcriptional regulator containing GAF, AAA	99.55
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	99.54
PHA02244	383	ATPase-like protein	99.53
COG3829	560	RocR Transcriptional regulator containing PAS, AAA	99.52
COG2204	464	AtoC Response regulator containing CheY-like recei	99.5
PRK13765	637	ATP-dependent protease Lon; Provisional	99.49
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.44
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	99.44
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	99.41
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	99.41
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.4
KOG0734|consensus	752		99.4
PF14551	121	MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1	99.38
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.36
COG1221	403	PspF Transcriptional regulators containing an AAA-	99.36
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.36
PRK11608	326	pspF phage shock protein operon transcriptional ac	99.34
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.34
CHL00181	287	cbbX CbbX; Provisional	99.34
PRK15424	538	propionate catabolism operon regulatory protein Pr	99.32
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	99.32
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	99.32
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	99.31
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.31
PRK05022	509	anaerobic nitric oxide reductase transcription reg	99.29
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	99.29
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	99.28
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	99.26
PLN03025	319	replication factor C subunit; Provisional	99.26
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	99.26
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.22
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.21
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.19
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	99.19
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	99.18
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	99.17
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.16
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	99.15
CHL00195	489	ycf46 Ycf46; Provisional	99.14
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.14
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	99.13
PRK11361	457	acetoacetate metabolism regulatory protein AtoC; P	99.12
KOG2004|consensus	906		99.11
PRK15115	444	response regulator GlrR; Provisional	99.11
KOG2028|consensus	554		99.11
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	99.11
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.1
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	99.09
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.09
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	99.08
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.08
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	99.08
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	99.07
KOG0989|consensus	346		99.06
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.06
CHL00176	638	ftsH cell division protein; Validated	99.05
COG3284	606	AcoR Transcriptional activator of acetoin/glycerol	99.05
PRK13342	413	recombination factor protein RarA; Reviewed	99.05
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.03
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.02
CHL00095	821	clpC Clp protease ATP binding subunit	99.02
KOG0738|consensus	491		99.02
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	99.01
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.01
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	99.0
KOG0990|consensus	360		98.99
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	98.99
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	98.97
COG3283	511	TyrR Transcriptional regulator of aromatic amino a	98.96
PRK10365	441	transcriptional regulatory protein ZraR; Provision	98.96
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	98.96
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	98.95
KOG0730|consensus	693		98.95
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	98.95
PRK13341	725	recombination factor protein RarA/unknown domain f	98.95
CHL00206	2281	ycf2 Ycf2; Provisional	98.95
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	98.93
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	98.93
KOG0742|consensus	630		98.93
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	98.93
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	98.92
PF00004	132	AAA: ATPase family associated with various cellula	98.9
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	98.89
KOG0745|consensus	564		98.88
PRK10865	857	protein disaggregation chaperone; Provisional	98.88
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	98.84
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.84
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	98.84
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	98.83
KOG0652|consensus	424		98.83
CHL00095	821	clpC Clp protease ATP binding subunit	98.83
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	98.83
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.82
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	98.82
KOG0737|consensus	386		98.81
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	98.81
KOG0736|consensus	953		98.81
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.8
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.8
KOG0731|consensus	774		98.8
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	98.78
PRK08084	235	DNA replication initiation factor; Provisional	98.77
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	98.76
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	98.76
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	98.76
KOG1942|consensus	456		98.76
KOG0733|consensus	802		98.76
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	98.76
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	98.75
PRK12402	337	replication factor C small subunit 2; Reviewed	98.75
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	98.75
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	98.74
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	98.74
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	98.74
PRK10865	857	protein disaggregation chaperone; Provisional	98.74
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	98.73
PRK06620	214	hypothetical protein; Validated	98.72
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	98.72
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	98.71
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	98.71
PRK00440	319	rfc replication factor C small subunit; Reviewed	98.68
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	98.68
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	98.68
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.68
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	98.67
COG4650	531	RtcR Sigma54-dependent transcription regulator con	98.65
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	98.65
PRK06893	229	DNA replication initiation factor; Validated	98.63
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	98.62
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	98.62
KOG0739|consensus	439		98.61
PRK08727	233	hypothetical protein; Validated	98.6
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	98.59
KOG0728|consensus	404		98.58
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	98.57
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	98.57
KOG0733|consensus	802		98.57
PRK09087	226	hypothetical protein; Validated	98.57
PRK00411	394	cdc6 cell division control protein 6; Reviewed	98.56
KOG0991|consensus	333		98.56
PTZ00112	1164	origin recognition complex 1 protein; Provisional	98.56
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	98.54
PHA02544	316	44 clamp loader, small subunit; Provisional	98.53
PRK04132	846	replication factor C small subunit; Provisional	98.53
KOG0727|consensus	408		98.52
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	98.52
PRK12422	445	chromosomal replication initiation protein; Provis	98.5
COG1067	647	LonB Predicted ATP-dependent protease [Posttransla	98.49
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	98.48
PRK00149	450	dnaA chromosomal replication initiation protein; R	98.48
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	98.47
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	98.46
PRK14087	450	dnaA chromosomal replication initiation protein; P	98.45
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	98.44
PRK04195	482	replication factor C large subunit; Provisional	98.44
PRK11823	446	DNA repair protein RadA; Provisional	98.44
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	98.42
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	98.4
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	98.4
KOG0726|consensus	440		98.4
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	98.39
PRK14086	617	dnaA chromosomal replication initiation protein; P	98.39
KOG0743|consensus	457		98.36
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.33
PRK07940	394	DNA polymerase III subunit delta'; Validated	98.33
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	98.33
PRK05642	234	DNA replication initiation factor; Validated	98.31
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.31
PRK05707	328	DNA polymerase III subunit delta'; Validated	98.29
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	98.28
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	98.27
TIGR02688	449	conserved hypothetical protein TIGR02688. Members	98.25
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	98.25
KOG0744|consensus	423		98.24
KOG0729|consensus	435		98.24
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	98.23
smart00382	148	AAA ATPases associated with a variety of cellular	98.22
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.22
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	98.21
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	98.17
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	98.15
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	98.13
PHA01747	425	putative ATP-dependent protease	98.07
PRK08058	329	DNA polymerase III subunit delta'; Validated	98.06
COG0593	408	DnaA ATPase involved in DNA replication initiation	98.05
KOG0735|consensus	952		98.03
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	98.01
KOG0651|consensus	388		97.99
PRK06964	342	DNA polymerase III subunit delta'; Validated	97.98
KOG0740|consensus	428		97.96
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	97.91
KOG0730|consensus	693		97.87
PRK06871	325	DNA polymerase III subunit delta'; Validated	97.87
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	97.87
PRK07993	334	DNA polymerase III subunit delta'; Validated	97.84
KOG1808|consensus	1856		97.79
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	97.79
PRK05564	313	DNA polymerase III subunit delta'; Validated	97.79
PF13337	457	Lon_2: Putative ATP-dependent Lon protease	97.75
KOG0732|consensus	1080		97.75
KOG0741|consensus	744		97.73
KOG1051|consensus	898		97.66
PRK09112	351	DNA polymerase III subunit delta'; Validated	97.65
PRK07471	365	DNA polymerase III subunit delta'; Validated	97.63
PRK08769	319	DNA polymerase III subunit delta'; Validated	97.58
PRK06921	266	hypothetical protein; Provisional	97.55
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	97.5
PRK08699	325	DNA polymerase III subunit delta'; Validated	97.5
KOG0736|consensus	953		97.45
PRK12377	248	putative replication protein; Provisional	97.44
PRK15455	644	PrkA family serine protein kinase; Provisional	97.44
PRK07399	314	DNA polymerase III subunit delta'; Validated	97.39
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	97.36
PRK06090	319	DNA polymerase III subunit delta'; Validated	97.34
KOG2680|consensus	454		97.3
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	97.3
KOG2035|consensus	351		97.25
TIGR02653	675	Lon_rel_chp conserved hypothetical protein. This m	97.23
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	97.22
PRK09862	506	putative ATP-dependent protease; Provisional	97.18
PRK08181	269	transposase; Validated	97.15
PRK08116	268	hypothetical protein; Validated	97.15
KOG1514|consensus	767		97.07
PRK06526	254	transposase; Provisional	97.05
KOG1969|consensus	877		97.02
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	96.99
PRK09183	259	transposase/IS protein; Provisional	96.99
PF13148	378	DUF3987: Protein of unknown function (DUF3987)	96.98
PF05272	198	VirE: Virulence-associated protein E; InterPro: IP	96.96
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	96.92
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	96.87
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	96.81
PRK06835	329	DNA replication protein DnaC; Validated	96.78
PRK07952	244	DNA replication protein DnaC; Validated	96.72
PF13654	509	AAA_32: AAA domain; PDB: 3K1J_B.	96.7
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.67
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	96.67
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	96.66
PHA02774	613	E1; Provisional	96.64
COG1484	254	DnaC DNA replication protein [DNA replication, rec	96.55
PHA02624	647	large T antigen; Provisional	96.52
PRK05917	290	DNA polymerase III subunit delta'; Validated	96.46
COG5245	3164	DYN1 Dynein, heavy chain [Cytoskeleton]	96.28
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	96.26
KOG2545|consensus	543		96.23
KOG0735|consensus	952		96.19
PRK07132	299	DNA polymerase III subunit delta'; Validated	96.16
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	96.15
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	96.13
PRK05818	261	DNA polymerase III subunit delta'; Validated	96.11
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	96.01
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	96.01
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	95.93
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	95.77
PF00519	432	PPV_E1_C: Papillomavirus helicase; InterPro: IPR00	95.62
PF13173	128	AAA_14: AAA domain	95.47
PF13335	96	Mg_chelatase_2: Magnesium chelatase, subunit ChlI	95.44
PRK04296	190	thymidine kinase; Provisional	95.42
TIGR01613	304	primase_Cterm phage/plasmid primase, P4 family, C-	95.42
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	95.42
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	95.39
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	95.36
PRK04040	188	adenylate kinase; Provisional	95.29
PF01443	234	Viral_helicase1: Viral (Superfamily 1) RNA helicas	95.26
PRK07276	290	DNA polymerase III subunit delta'; Validated	95.19
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	95.12
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	95.06
KOG3347|consensus	176		94.88
PHA00729	226	NTP-binding motif containing protein	94.83
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	94.78
COG4178	604	ABC-type uncharacterized transport system, permeas	94.73
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	94.71
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	94.66
PRK14532	188	adenylate kinase; Provisional	94.64
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	94.56
KOG2170|consensus	344		94.49
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	94.47
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	94.35
PRK13947	171	shikimate kinase; Provisional	94.34
PRK08118	167	topology modulation protein; Reviewed	94.33
PRK00131	175	aroK shikimate kinase; Reviewed	94.16
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	94.12
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	94.01
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	93.9
PRK03839	180	putative kinase; Provisional	93.88
PRK14530	215	adenylate kinase; Provisional	93.81
PF13245	76	AAA_19: Part of AAA domain	93.77
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	93.74
PRK00625	173	shikimate kinase; Provisional	93.68
KOG3595|consensus	1395		93.67
PRK06581	263	DNA polymerase III subunit delta'; Validated	93.57
PRK07261	171	topology modulation protein; Provisional	93.55
PRK13949	169	shikimate kinase; Provisional	93.49
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	93.49
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	93.43
PRK06762	166	hypothetical protein; Provisional	93.43
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	93.28
PRK14531	183	adenylate kinase; Provisional	93.26
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	93.17
PF05729	166	NACHT: NACHT domain	93.08
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	93.08
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	93.07
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	93.05
PF07726	131	AAA_3: ATPase family associated with various cellu	93.04
PRK14526	211	adenylate kinase; Provisional	92.88
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	92.85
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	92.81
PRK08233	182	hypothetical protein; Provisional	92.79
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	92.76
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	92.68
PRK14528	186	adenylate kinase; Provisional	92.65
PTZ00088	229	adenylate kinase 1; Provisional	92.64
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	92.63
PRK08939	306	primosomal protein DnaI; Reviewed	92.63
TIGR01448	720	recD_rel helicase, putative, RecD/TraA family. Thi	92.56
PRK06217	183	hypothetical protein; Validated	92.51
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	92.45
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	92.41
PRK05057	172	aroK shikimate kinase I; Reviewed	92.29
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	92.27
PRK02496	184	adk adenylate kinase; Provisional	92.19
COG4619	223	ABC-type uncharacterized transport system, ATPase	92.18
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	92.13
PHA02530	300	pseT polynucleotide kinase; Provisional	92.11
PRK14527	191	adenylate kinase; Provisional	92.08
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	92.07
TIGR01447	586	recD exodeoxyribonuclease V, alpha subunit. This f	92.05
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	92.04
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	92.01
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	91.93
PF13555	62	AAA_29: P-loop containing region of AAA domain	91.9
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	91.88
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	91.87
PRK00279	215	adk adenylate kinase; Reviewed	91.87
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	91.83
TIGR02768	744	TraA_Ti Ti-type conjugative transfer relaxase TraA	91.81
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	91.7
PLN02200	234	adenylate kinase family protein	91.7
PLN02348	395	phosphoribulokinase	91.67
KOG2227|consensus	529		91.63
PRK13851	344	type IV secretion system protein VirB11; Provision	91.6
PTZ00301	210	uridine kinase; Provisional	91.52
PRK14529	223	adenylate kinase; Provisional	91.51
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	91.49
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	91.44
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	91.44
COG1485	367	Predicted ATPase [General function prediction only	91.31
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	91.31
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	91.3
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	91.2
PRK00300	205	gmk guanylate kinase; Provisional	91.19
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	91.16
PRK03731	171	aroL shikimate kinase II; Reviewed	91.02
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	90.94
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	90.82
PRK13948	182	shikimate kinase; Provisional	90.7
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	90.69
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	90.68
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	90.68
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	90.67
KOG2383|consensus	467		90.62
PLN02674	244	adenylate kinase	90.55
PRK05541	176	adenylylsulfate kinase; Provisional	90.53
PRK13946	184	shikimate kinase; Provisional	90.5
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	90.48
PRK13406	584	bchD magnesium chelatase subunit D; Provisional	90.45
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	90.43
TIGR00235	207	udk uridine kinase. Model contains a number of lon	90.37
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	90.3
PRK03846	198	adenylylsulfate kinase; Provisional	90.27
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	90.26
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	90.25
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	90.23
PLN02459	261	probable adenylate kinase	90.22
PF13479	213	AAA_24: AAA domain	90.2
PF00005	137	ABC_tran: ABC transporter This structure is on hol	90.09
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	89.99
KOG0060|consensus	659		89.92
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	89.91
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	89.9
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	89.89
PRK12339	197	2-phosphoglycerate kinase; Provisional	89.83
PRK14737	186	gmk guanylate kinase; Provisional	89.81
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	89.73
COG0606	490	Predicted ATPase with chaperone activity [Posttran	89.71
PRK09825	176	idnK D-gluconate kinase; Provisional	89.71
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	89.68
PRK00889	175	adenylylsulfate kinase; Provisional	89.67
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	89.64
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	89.63
PRK05480	209	uridine/cytidine kinase; Provisional	89.48
PRK06547	172	hypothetical protein; Provisional	89.46
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	89.42
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	89.42
PLN02165	334	adenylate isopentenyltransferase	89.4
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	89.35
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	89.33
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	89.32
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	89.32
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	89.31
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	89.23
COG4098	441	comFA Superfamily II DNA/RNA helicase required for	89.22
PRK04182	180	cytidylate kinase; Provisional	89.17
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	89.12
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	89.11
PRK01184	184	hypothetical protein; Provisional	89.09
PRK14738	206	gmk guanylate kinase; Provisional	89.08
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	89.06
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	89.04
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	89.02
PLN02318	656	phosphoribulokinase/uridine kinase	88.98
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	88.94
PRK13833	323	conjugal transfer protein TrbB; Provisional	88.93
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	88.93
TIGR02237	209	recomb_radB DNA repair and recombination protein R	88.93
PRK13695	174	putative NTPase; Provisional	88.9
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	88.88
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	88.87
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	88.83
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	88.74
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	88.74
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	88.64
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	88.57
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	88.56
PRK13826	1102	Dtr system oriT relaxase; Provisional	88.47
PRK13975	196	thymidylate kinase; Provisional	88.43
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	88.42
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	88.37
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	88.36
PRK08356	195	hypothetical protein; Provisional	88.29
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	88.2
KOG1970|consensus	634		88.19
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	88.16
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	88.14
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	88.13
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	88.13
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	88.06
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	88.06
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	88.05
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	88.05
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	88.03
cd03269	210	ABC_putative_ATPase This subfamily is involved in	87.99
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	87.96
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	87.91
cd03216	163	ABC_Carb_Monos_I This family represents the domain	87.89
PF01057	271	Parvo_NS1: Parvovirus non-structural protein NS1;	87.86
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	87.8
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	87.76
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	87.73
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	87.7
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	87.67
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	87.66
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	87.65
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	87.63
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	87.61
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	87.57
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	87.54
cd03246	173	ABCC_Protease_Secretion This family represents the	87.54
PRK13808	333	adenylate kinase; Provisional	87.53
PRK13889	988	conjugal transfer relaxase TraA; Provisional	87.51

>KOG0478|consensus

Probab=100.00  E-value=1.8e-96  Score=802.76  Aligned_cols=460  Identities=64%  Similarity=0.970  Sum_probs=447.6

Q ss_pred             hhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCcccccccceEEEecCCccccccc
Q psy17703        178 TDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLEHQIQVRPFNAKKTRNLR  257 (720)
Q Consensus       178 ~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  257 (720)
                      |.+.+++|...+...+++|..||+.||.+||++++.||+|+++.|+.++++++.+.++.....+.++||++|..++.++|
T Consensus       154 yi~~l~e~~~~~~~~ln~~~~hl~~~~~~Ly~ql~~ypqevip~~d~t~~~~~~e~~~~~~~~~~i~vRPfn~~~~~smr  233 (804)
T KOG0478|consen  154 YIKSLLELKELEPEFLNLDAEHLTDFDMDLYRQLVVYPQEVIPIFDETANEIVLERYVLEILEKSIKVRPFNAGKTFSMR  233 (804)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhccccccHHHHHhhhhchHhhcccchHHHHHHHHhhccccchhceeEeeccCcccccccc
Confidence            66779999999999999999999999999999999999999999999999999999988888899999999999999999


Q ss_pred             cCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCCCCCCCcceeeccCCccchhhhh
Q psy17703        258 HLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNRSHFTDKQLV  337 (720)
Q Consensus       258 ~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~~~~~~~~s~~~d~Q~i  337 (720)
                      +|+|++|+|||+++|+|+|+|++.|+|+.++|+|..|++++.+++.+|++.+|..|++|+..+.|.+.|++|.|.|+|.+
T Consensus       234 ~lNp~dIDkLisI~GmViRss~vipem~~afFrC~vC~~~~~ve~drg~i~eP~~C~~C~~~~~~~Lihnrs~F~dkQvi  313 (804)
T KOG0478|consen  234 NLNPNDIDKLISISGMVIRSSEVIPEMVEAFFRCSVCGHEIAVESDRGRIKEPMLCKECGTTNSFQLLHNRSEFADKQVI  313 (804)
T ss_pred             cCChhhhhheEEeeeEEEecCCCCHHHHhHhhhhhhcCceEEEEeecCccCCCcccccccCcccceeehhhhhhccccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCC--------------------------------------------------------------------------
Q psy17703        338 RLQETP--------------------------------------------------------------------------  343 (720)
Q Consensus       338 klQE~p--------------------------------------------------------------------------  343 (720)
                      |+||.|                                                                          
T Consensus       314 klqEspd~~p~g~tPhtv~v~~~~dLVD~v~pGDrv~VTGi~ra~p~r~np~~r~vkSvyktyldvvh~rk~s~~rl~~~  393 (804)
T KOG0478|consen  314 KLQESPDDMPEGSTPHTVSVVLHNDLVDKVRPGDRVEVTGILRATPVRVNPRMRMVKSVYKTYLDVVHIRKASMKRLEGS  393 (804)
T ss_pred             eeeeccccCcCCCCCceEEEEEehhhhhccCCCCeEEEEEEEEeEEeccCcchhhHHHHHHHHhHhhhhhhhhhhhcccc
Confidence            999998                                                                          


Q ss_pred             -------------------------------------------------------------------CCccEEEEcCCCC
Q psy17703        344 -------------------------------------------------------------------AEINILLCGDPGT  356 (720)
Q Consensus       344 -------------------------------------------------------------------g~i~vLL~G~PGt  356 (720)
                                                                                         |+|||||+|||||
T Consensus       394 d~~d~~~~~~~~~~e~i~elskrpdiy~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGt  473 (804)
T KOG0478|consen  394 DERDVDEVRRIEDLEKIQELSKRPDIYELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGT  473 (804)
T ss_pred             ccccccccccHHHHHHHHHHhcCccHHHHHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCc
Confidence                                                                               6799999999999


Q ss_pred             HHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhc
Q psy17703        357 SKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQ  436 (720)
Q Consensus       357 GKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~  436 (720)
                      |||||++|+++++||++|++|++++++|+|+++++|+.+++|+++.|+|+++|+|||||||||||+.+.|+.|||+||||
T Consensus       474 sKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQ  553 (804)
T KOG0478|consen  474 SKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQ  553 (804)
T ss_pred             CHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHHHhhc--------
Q psy17703        437 TLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL--------  508 (720)
Q Consensus       437 ~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i--------  508 (720)
                      +++|+|||++++||+|++|+|++||.+++||+.+++.+|++|||+|||||||+|.+.|++++..|++|+.|+        
T Consensus       554 TvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~  633 (804)
T KOG0478|consen  554 TLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETG  633 (804)
T ss_pred             hhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998        


Q ss_pred             --------chhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCC
Q psy17703        509 --------DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVE  580 (720)
Q Consensus       509 --------~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~  580 (720)
                              +..+++.|+.||++.++|.+++|+.+.+..+|+.+|+.+...+.+..|+||+|+|+|++||||++++++.|.
T Consensus       634 ~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRlsEahak~r~s~~ve  713 (804)
T KOG0478|consen  634 EKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRLSEAHAKMRLSNRVE  713 (804)
T ss_pred             ccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhhcccccc
Confidence                    667899999999999999999999999999999999998877788999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHHhccCCCCCcceeeeeccCCCHHHHHHHHHHHHHHHHHHHH
Q psy17703        581 VQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLELTAALKKLVIL  637 (720)
Q Consensus       581 ~~Dv~~Ai~l~~~~l~~~~~d~~~g~~d~~~~~~g~~~~~~~~~~~~~~~i~~~~~~  637 (720)
                      ..|+++|++|++++++++++||.+|.+|++++++|.+...++.++.+.+++.++++.
T Consensus       714 ~~dV~eA~~l~R~aL~~~a~d~~tg~vd~~~l~tg~s~~~~~~~~~~~~ai~~~l~~  770 (804)
T KOG0478|consen  714 EIDVEEAVRLLREALKQSATDPATGKVDMDILATGNSVVSRKKVEILGGAILKMLKD  770 (804)
T ss_pred             hhhHHHHHHHHHHHhcccCCCCCCCceeehhhhhcccccchHHHHHHHHHHHHHhHH
Confidence            999999999999999999999999999999999999999999888888888887763

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

Probab=100.00  E-value=1.8e-93  Score=807.17  Aligned_cols=425  Identities=51%  Similarity=0.779  Sum_probs=396.1

Q ss_pred             CCCCCCceEEEEEEcccccccccCCCeEEEEEEEEeccCCCCccccccccceeEEEEEEEEEEecccccccccccCCCCC
Q psy17703          1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQDEKEHKFP   80 (720)
Q Consensus         1 VP~G~~Prsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   80 (720)
                      +|.|++||+++|++++|||+++.|||||.||||++..+.+..++ +....+|++|++++++.+.+..       .+..+|
T Consensus       189 ~p~g~~Prs~~vil~~dlv~~~~pGdrV~itGi~~~~~~~~~~~-~~~~~~~~~~~~a~~v~~~~~~-------~~~~~t  260 (682)
T COG1241         189 VPGGELPRSIEVILEDDLVDSVRPGDRVKITGVVRIVPSRSLSG-RRKGPVFEIYLEANSVEKLDKR-------EEVEIT  260 (682)
T ss_pred             CCCCCCCceEEEEEecCcccccCCCCEEEEEEEEeccccccccc-ccCCceEEEEEEEEEEEeccch-------hhccCC
Confidence            69999999999999999999999999999999999988432222 3346789999999999886532       456799


Q ss_pred             hHHHHHHHhhhcCCcHHHHHHHhhchhccCchhhHHHHHHHhhCCcccccccccccCCcccccCCCcccCCCCCcccccc
Q psy17703         81 PERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSSIGSLRT  160 (720)
Q Consensus        81 ~~~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk~lll~L~GG~~k~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~  160 (720)
                      ++++++|++++++||+|++|++|||||||||++||||||||||||+.|++++|+++|                       
T Consensus       261 ~ed~e~i~elak~~~i~~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iR-----------------------  317 (682)
T COG1241         261 EEDEEEIKELAKRPDIYDILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIR-----------------------  317 (682)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccc-----------------------
Confidence            999999999999999999999999999999999999999999999999876443211                       


Q ss_pred             CCCCCcCCccccCCCchhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCcccccc
Q psy17703        161 PRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLE  240 (720)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~~  240 (720)
                                                                                                      
T Consensus       318 --------------------------------------------------------------------------------  317 (682)
T COG1241         318 --------------------------------------------------------------------------------  317 (682)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cceEEEecCCccccccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCCCCCCC
Q psy17703        241 HQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNH  320 (720)
Q Consensus       241 ~~~~~~~~~~~~~~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~  320 (720)
                                                                                                      
T Consensus       318 --------------------------------------------------------------------------------  317 (682)
T COG1241         318 --------------------------------------------------------------------------------  317 (682)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cceeeccCCccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceee
Q psy17703        321 CFSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVL  400 (720)
Q Consensus       321 ~~~~~~~~s~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~  400 (720)
                                             |||||||+||||||||||++++++.+||++|++|++++++||||++++|+.+|+|++
T Consensus       318 -----------------------GDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~L  374 (682)
T COG1241         318 -----------------------GDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVL  374 (682)
T ss_pred             -----------------------cceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEE
Confidence                                   699999999999999999999999999999999999999999999999999999999


Q ss_pred             ecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCCh
Q psy17703        401 QTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPH  480 (720)
Q Consensus       401 ~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~  480 (720)
                      ++|+|++||+|||||||||||+..++++|||+||||+|+|+|+|++++||+||+++||+||.+|+|+.++++.+|++||+
T Consensus       375 eaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~  454 (682)
T COG1241         375 EAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPA  454 (682)
T ss_pred             eCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccceeEEEecCCChHHHHHHHHhhc------------------------chhHHHHHHHHHHhhcCCcchHHHHHHH
Q psy17703        481 TLLSRFDLIFLLLDPQSEQFDARLARHL------------------------DITVLRDYIAYAQEHLSPTLSEEASQRL  536 (720)
Q Consensus       481 aLlsRFdli~~l~d~~~~~~d~~la~~i------------------------~~~~l~~~i~~ar~~~~p~ls~ea~~~l  536 (720)
                      +|||||||+|.+.|.++++.|+.++.|+                        +.++||+||.|||+++.|.++++|.+.|
T Consensus       455 ~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l  534 (682)
T COG1241         455 PLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREEL  534 (682)
T ss_pred             hHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHH
Confidence            9999999999999999999999999987                        1457999999999999999999999999


Q ss_pred             HHHHHHhhhcCC---CCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHHHHHHhccCCCCCcceeeeec
Q psy17703        537 IQTYVDMRKLGA---GRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILT  613 (720)
Q Consensus       537 ~~~y~~lr~~~~---~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~~l~~~~~d~~~g~~d~~~~~  613 (720)
                      .++|+++|+.+.   ....+++|+||||+++|||+|+|||++++.|+++|+.+|++|++.+++++++||++|.+|.+.+.
T Consensus       535 ~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~~l~~v~~dp~~g~~d~~~~~  614 (682)
T COG1241         535 EDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFSLKTVAVDPEKGKIDIDIIE  614 (682)
T ss_pred             HHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCccCCceehhhhc
Confidence            999999998643   35679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHhC
Q psy17703        614 TGVSSAARQRQLELTAALKKLVILLG  639 (720)
Q Consensus       614 ~g~~~~~~~~~~~~~~~i~~~~~~~~  639 (720)
                      +|.+.+++++.+.+...++++.++..
T Consensus       615 ~~~~~~~~~~~~~~~~~i~e~~~~~~  640 (682)
T COG1241         615 PGKSKSKRDKIEKVLDIIKELVERSE  640 (682)
T ss_pred             cCCcchhhhhHHHHHHHHHHHhhccc
Confidence            99999999999999998888777644

>KOG0482|consensus

Probab=100.00  E-value=7.3e-93  Score=749.23  Aligned_cols=448  Identities=40%  Similarity=0.612  Sum_probs=393.5

Q ss_pred             CCCCCCceEEEEEEcccccccccCCCeEEEEEEEEeccCCCCccccccccceeEEEEEEEEEEecccccccccccCCCCC
Q psy17703          1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQDEKEHKFP   80 (720)
Q Consensus         1 VP~G~~Prsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   80 (720)
                      ||.|+||||++|+|+++++++|+|||+|.|+|||.|.|+.+++..+. .-+-.||+++..+.+++.      .+.+.+++
T Consensus       244 VPvG~IPRsltv~~~ge~tr~~~PGDvV~vsGiFLP~pytGfr~~~a-GLladtYLeAh~v~~~nk------~~~~~~~~  316 (721)
T KOG0482|consen  244 VPVGHIPRSLTVHVYGEMTRKCQPGDVVVVSGIFLPIPYTGFRALKA-GLLADTYLEAHRVVQINK------KYDNIEKT  316 (721)
T ss_pred             CCCCccCceeEEEEecccceecCCCCEEEEeeeecccchhhHHHHHh-hhHHHHHHHHhhhhhhcc------cccccccc
Confidence            89999999999999999999999999999999999999988776653 235689999987776542      23445566


Q ss_pred             hHHHHHHHhhhcCCcHHHHHHHhhchhccCchhhHHHHHHHhhCCcccccccccccCCcccccCCCcccCCCCCcccccc
Q psy17703         81 PERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSSIGSLRT  160 (720)
Q Consensus        81 ~~~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk~lll~L~GG~~k~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~  160 (720)
                      .+...++.++.+..|+|++|++||||+||||+||||||||+|+||+.|...+                            
T Consensus       317 ~~~~~~~~~~~~~~d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~d----------------------------  368 (721)
T KOG0482|consen  317 GELEPEELELIAEGDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGD----------------------------  368 (721)
T ss_pred             ccccHHHHHHhhcccHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCC----------------------------
Confidence            6667777777778999999999999999999999999999999999987532                            


Q ss_pred             CCCCCcCCccccCCCchhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCcccccc
Q psy17703        161 PRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLE  240 (720)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~~  240 (720)
                                                                                                      
T Consensus       369 --------------------------------------------------------------------------------  368 (721)
T KOG0482|consen  369 --------------------------------------------------------------------------------  368 (721)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cceEEEecCCccccccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCCCCCCC
Q psy17703        241 HQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNH  320 (720)
Q Consensus       241 ~~~~~~~~~~~~~~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~  320 (720)
                                                     ||-||                                            
T Consensus       369 -------------------------------GMKIR--------------------------------------------  373 (721)
T KOG0482|consen  369 -------------------------------GMKIR--------------------------------------------  373 (721)
T ss_pred             -------------------------------Cceee--------------------------------------------
Confidence                                           33333                                            


Q ss_pred             cceeeccCCccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceee
Q psy17703        321 CFSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVL  400 (720)
Q Consensus       321 ~~~~~~~~s~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~  400 (720)
                                             |+|||+|+||||++||||++++.+++||++|++|++||++||||++.+|+.++++++
T Consensus       374 -----------------------GdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM~L  430 (721)
T KOG0482|consen  374 -----------------------GDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEMVL  430 (721)
T ss_pred             -----------------------cceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhhhcCCCCCeeEe
Confidence                                   799999999999999999999999999999999999999999999999999999999


Q ss_pred             ecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCCh
Q psy17703        401 QTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPH  480 (720)
Q Consensus       401 ~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~  480 (720)
                      |.|+|+|||+|||||||||||.+.++.++||+||||+|||+|+|+.++||+||+|+|||||.+|+||+..++.+|++||+
T Consensus       431 EGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPa  510 (721)
T KOG0482|consen  431 EGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPA  510 (721)
T ss_pred             ccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccceeEEEecCCChHHHHHHHHhhc-----------------chhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHh
Q psy17703        481 TLLSRFDLIFLLLDPQSEQFDARLARHL-----------------DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDM  543 (720)
Q Consensus       481 aLlsRFdli~~l~d~~~~~~d~~la~~i-----------------~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~l  543 (720)
                      |||||||++|++.|.++.+.|.+||+|+                 +.+.+|.||++||+ ..|.++++..+.+..+|+++
T Consensus       511 ALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~-~~P~vp~~l~dyi~~AYv~~  589 (721)
T KOG0482|consen  511 ALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKR-KNPVVPEALADYITGAYVEL  589 (721)
T ss_pred             HHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998                 67899999999998 59999999999999999999


Q ss_pred             hhcCCC-CCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHHHHHHhccCCCCCcceeeeeccCCCHHHHH
Q psy17703        544 RKLGAG-RGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQ  622 (720)
Q Consensus       544 r~~~~~-~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~~l~~~~~d~~~g~~d~~~~~~g~~~~~~~  622 (720)
                      |+.+.. +.....|||.|.+++|+|.|+||||+++.|.++|+.||++||+-+- .+.... .+      -..+.++    
T Consensus       590 Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLme~sK-~sL~~~-~~------~~~~~~~----  657 (721)
T KOG0482|consen  590 RREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLMEMSK-DSLYQD-DG------QKEDTSA----  657 (721)
T ss_pred             HHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHhhh-cccccc-cc------cccccch----
Confidence            998754 3445678999999999999999999999999999999999997543 332211 11      1222333    


Q ss_pred             HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHhhcccccCCCcccccccccCChh
Q psy17703        623 RQLELTAALKKLVILLGPSVTVTQQKLIMDLKGALVLADSGVCCIDEFDKMSDT  676 (720)
Q Consensus       623 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~alv~ad~~~~~idE~~~l~~~  676 (720)
                       ...+.+.|+++..+.++ ..+++..+.+....++....+...|||||..+.-|
T Consensus       658 -~~~if~iirel~~e~g~-~~v~~s~~~~r~~~kGfs~~ql~~~i~ey~~lnVw  709 (721)
T KOG0482|consen  658 -TDAIFAIIRELAGEGGK-RCVKLSNAEQRCVRKGFSEAQLKKCIDEYAELNVW  709 (721)
T ss_pred             -HHHHHHHHHHHHhhcCC-ceeeHHHHHHHHHHcCCCHHHHHHHHHHHHhcCeE
Confidence             22477888888886443 35788888888888888888888899999888554

>KOG0481|consensus

Probab=100.00  E-value=1.1e-88  Score=718.25  Aligned_cols=436  Identities=43%  Similarity=0.649  Sum_probs=379.0

Q ss_pred             CCCCCCceEEEEEEcccccccccCCCeEEEEEEEEeccCCC-CccccccccceeEEEEEEEEEEecccccccccccCCCC
Q psy17703          1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQV-NPRMRSVKSVYKTHIDVVHFRKIDATRLYKQDEKEHKF   79 (720)
Q Consensus         1 VP~G~~Prsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   79 (720)
                      ||.|+|||++.++|+++||+++.||.||+|+|||....... ..+.++..++...|+.|+.++......   .......|
T Consensus       228 VP~GE~PRhl~L~~dRyL~~kvvPG~RvtI~GIYsI~~~~~~~~s~k~~v~iR~PyirVvGi~~ds~~s---s~~~~~~f  304 (729)
T KOG0481|consen  228 VPVGEMPRHLQLFCDRYLTNKVVPGNRVTIMGIYSIKKFGSTSSSDKSGVGIRTPYIRVVGIQDDSEGS---SRSSATMF  304 (729)
T ss_pred             CCcCcCcchhhhhhhHHHhccccCCceEEEEEEEEeeeccccCCCCccceeeecceEEEEEEEeccCCc---cccCcccC
Confidence            89999999999999999999999999999999999864332 122334566788999999997643211   11234579


Q ss_pred             ChHHHHHHHhhhcCCcHHHHHHHhhchhccCchhhHHHHHHHhhCCcccccccccccCCcccccCCCcccCCCCCccccc
Q psy17703         80 PPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSSIGSLR  159 (720)
Q Consensus        80 ~~~~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk~lll~L~GG~~k~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~  159 (720)
                      |+|+++.|++|++.||+|++|.+|||||||||+||||||+|+||||+.|.+|||..+|                      
T Consensus       305 t~eEEEeFk~la~~~d~Ye~is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lR----------------------  362 (729)
T KOG0481|consen  305 TPEEEEEFKKLAASPDVYERISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLR----------------------  362 (729)
T ss_pred             ChhHHHHHHHHhcCccHHHHHhhccCchhcCchhHHHHHHHHhhcCccccCCCcceec----------------------
Confidence            9999999999999999999999999999999999999999999999999998653211                      


Q ss_pred             cCCCCCcCCccccCCCchhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCccccc
Q psy17703        160 TPRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVL  239 (720)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~  239 (720)
                                                                                                      
T Consensus       363 --------------------------------------------------------------------------------  362 (729)
T KOG0481|consen  363 --------------------------------------------------------------------------------  362 (729)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccceEEEecCCccccccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCCCCCC
Q psy17703        240 EHQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTN  319 (720)
Q Consensus       240 ~~~~~~~~~~~~~~~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~  319 (720)
                                                                                                      
T Consensus       363 --------------------------------------------------------------------------------  362 (729)
T KOG0481|consen  363 --------------------------------------------------------------------------------  362 (729)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcceeeccCCccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCcccccee
Q psy17703        320 HCFSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMV  399 (720)
Q Consensus       320 ~~~~~~~~~s~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~  399 (720)
                                              |||||||.|||||+||||++++.+.+|-++|++|++|+++||||++.+|+.+++|.
T Consensus       363 ------------------------GDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~RD~~tReFy  418 (729)
T KOG0481|consen  363 ------------------------GDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIRDPSTREFY  418 (729)
T ss_pred             ------------------------cceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEecCCcceEE
Confidence                                    79999999999999999999999999999999999999999999999999999999


Q ss_pred             eecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCC
Q psy17703        400 LQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLP  479 (720)
Q Consensus       400 ~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~  479 (720)
                      +|.|+++||||||+||||||||.++++.++||+||||+++|+|+|++++||+||+|+|||||.+|+||..|+..+|+++-
T Consensus       419 lEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~  498 (729)
T KOG0481|consen  419 LEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFM  498 (729)
T ss_pred             EecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccceeEEEecCCChHHHHHHHHhhc----------------------chhHHHHHHHHHHhhcCCcchHHHHHHHH
Q psy17703        480 HTLLSRFDLIFLLLDPQSEQFDARLARHL----------------------DITVLRDYIAYAQEHLSPTLSEEASQRLI  537 (720)
Q Consensus       480 ~aLlsRFdli~~l~d~~~~~~d~~la~~i----------------------~~~~l~~~i~~ar~~~~p~ls~ea~~~l~  537 (720)
                      +.+|||||+||.+.|..+++.|..||+|+                      +.+.+++||.|||.+|.|+|+++|.+.|.
T Consensus       499 ~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~  578 (729)
T KOG0481|consen  499 PTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLS  578 (729)
T ss_pred             hhHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence            99999999999999999999999999998                      56789999999999999999999999999


Q ss_pred             HHHHHhhhcC-------CCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHHHHHHhc-cCCCCCccee
Q psy17703        538 QTYVDMRKLG-------AGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSA-TDPLSGKIDV  609 (720)
Q Consensus       538 ~~y~~lr~~~-------~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~~l~~~~-~d~~~g~~d~  609 (720)
                      ..|+.+|...       ..+..+|+|.||||+++|+++++|+|+++..+|+.|+++|++||+.+--+++ .++..|    
T Consensus       579 ~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF~vSTmdAa~~g~l~g----  654 (729)
T KOG0481|consen  579 SRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRLFQVSTMDAASQGTLAG----  654 (729)
T ss_pred             HHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhHhhHHHHhcCchhc----
Confidence            9999998753       2356799999999999999999999999999999999999999998765554 333222    


Q ss_pred             eeeccCCCHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHh
Q psy17703        610 SILTTGVSSAARQRQLELTAALKKLVILLGPSVTVTQQKLIMDLK  654 (720)
Q Consensus       610 ~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~  654 (720)
                         ..|..+..  ..+.+..+=+.+-.+-+.|+.+++..|+.++.
T Consensus       655 ---~egf~s~e--~~e~i~rie~qlkrr~~IG~~~se~~li~df~  694 (729)
T KOG0481|consen  655 ---VEGFTSPE--DQEEIKRIEKQLKRRFAIGSQVSEHSLIRDFV  694 (729)
T ss_pred             ---ccccCCHH--HHHHHHHHHHHHHHhcccccchhHHHHHHHHH
Confidence               13432221  12223222222223456788899988887775

>KOG0480|consensus

Probab=100.00  E-value=6.4e-88  Score=730.60  Aligned_cols=415  Identities=41%  Similarity=0.648  Sum_probs=392.6

Q ss_pred             HhcCCcEEEEechhHhh-hcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCc-ccccccceEEEecCCccccccccCCCcC
Q psy17703        186 FSLEDPVLNVNLAHLAK-FDSQLCQQLVCYPQEVIPILDMGVNEYFFERHP-AAVLEHQIQVRPFNAKKTRNLRHLNPED  263 (720)
Q Consensus       186 ~~~~~~~l~id~~~l~~-~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~l~~~~  263 (720)
                      .-.+..+|.||+.||.. |+++|+..|..+|...++.+..|+..++....+ ...+.++++++++|+|....+|+|+++.
T Consensus        53 ~~~~~~tl~vd~~~l~~~~~~~la~~l~~~~~r~~p~m~~av~~~l~d~~~~~~~~~~~~~v~f~nlp~~~~irdlra~~  132 (764)
T KOG0480|consen   53 DRPERNTLLVDFQHLSKQYNQNLATALEENYYRVLPCMCRAVHKVLKDWSTNSGALVKKIYVRFYNLPTRHKIRDLRAAR  132 (764)
T ss_pred             ccCCCceEEEEHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHcccccccccceeEEEEEeccccccccccccHhh
Confidence            33467799999999998 999999999999999999999999998866211 2345578999999999999999999999


Q ss_pred             CCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCC--CCCCCcceeeccCCccchhhhhhhhc
Q psy17703        264 IDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTN--CSTNHCFSLVHNRSHFTDKQLVRLQE  341 (720)
Q Consensus       264 i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~--C~~~~~~~~~~~~s~~~d~Q~iklQE  341 (720)
                      ||+|++++|.|+|+++|+|++++++|.|..||..+....+.+++++|.+||+  |.++.+|.++.++|.|.|||+||+||
T Consensus       133 iG~Lv~isGtVvRts~VrPelt~~~F~C~~C~t~i~~v~q~fkYt~Pt~C~np~C~nrr~f~l~~~~s~f~D~QkIrIQE  212 (764)
T KOG0480|consen  133 IGKLVRISGTVVRTSPVRPELTKMTFLCEKCGTVIRNVEQQFKYTEPTKCPNPVCSNRRSFTLDRSSSRFLDWQKIRIQE  212 (764)
T ss_pred             hcceEEEEEEEEEeecccceeeeeEEEHhhCCCeeccchhcCccCCCccCCCccccCCceeeeecccceeeeeeeeehhh
Confidence            9999999999999999999999999999999999999999999999999997  88889999999999999999999999


Q ss_pred             CC------------------------------------------------------------------------------
Q psy17703        342 TP------------------------------------------------------------------------------  343 (720)
Q Consensus       342 ~p------------------------------------------------------------------------------  343 (720)
                      ..                                                                              
T Consensus       213 ~~~E~p~GsiPRtvdviLr~dlVe~~~pGD~v~~TGiliVvpdv~~l~~pgsk~~n~r~~~~~~~i~~lkal~Vrdl~yq  292 (764)
T KOG0480|consen  213 LQAEIPRGSIPRTVDVILRGDLVETAQPGDKVDITGILIVVPDVSQLGGPGSKAENNRGGETGDGITGLKALGVRDLTYQ  292 (764)
T ss_pred             hhhhCCCCCCCceeEEEEhhhhHhhcCCCCEEEEEEEEEEecChHHhcCCccccccccCCCcccceeeehhcccccchhh
Confidence            64                                                                              


Q ss_pred             --------------------------------------------------------------------------------
Q psy17703        344 --------------------------------------------------------------------------------  343 (720)
Q Consensus       344 --------------------------------------------------------------------------------  343 (720)
                                                                                                      
T Consensus       293 ~aFlac~~~~~~~~ee~~~~~~~~~~s~~e~~~~~em~~~~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg  372 (764)
T KOG0480|consen  293 LAFLACHVQSTLAVEEDDEEDMLNSMSSEEFAEIREMSKDENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEG  372 (764)
T ss_pred             hhHhhhhcccccccchhhhHHHhhhccHHHHHHHHHHhcCchHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCC
Confidence                                                                                            


Q ss_pred             ----CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccc
Q psy17703        344 ----AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFD  419 (720)
Q Consensus       344 ----g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEid  419 (720)
                          ||+|||++|||||||||++++++..+||++|++|+.++++|||+++++|+.++++++++|||+|||+|||||||||
T Consensus       373 ~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFD  452 (764)
T KOG0480|consen  373 TSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFD  452 (764)
T ss_pred             ccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhc
Confidence                8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHH
Q psy17703        420 KMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQ  499 (720)
Q Consensus       420 km~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~  499 (720)
                      ||+..+|.+|||+||||+|+|+|+|+.++||+|++|||||||..|+||..|++.+|+++++|++|||||+|.+.|..++.
T Consensus       453 KMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~  532 (764)
T KOG0480|consen  453 KMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEV  532 (764)
T ss_pred             ccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc-----------------chhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcC-C--CCCCcccCHHH
Q psy17703        500 FDARLARHL-----------------DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLG-A--GRGRISAYPRQ  559 (720)
Q Consensus       500 ~d~~la~~i-----------------~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~-~--~~~~~~~t~R~  559 (720)
                      .|..+++||                 +.+.+++||.||| +++|+++.+|.+.|+++|..+|... .  ++..+++|.||
T Consensus       533 ~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR-~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRq  611 (764)
T KOG0480|consen  533 VDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYAR-NFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQ  611 (764)
T ss_pred             HHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHH-hcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHH
Confidence            999999998                 6789999999999 6899999999999999999999865 2  24589999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHHHHHHhccC
Q psy17703        560 LESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATD  601 (720)
Q Consensus       560 le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~~l~~~~~d  601 (720)
                      ||+||||+||+||++++++||++|+.+|.+|+++++-....|
T Consensus       612 LESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~Siv~ve~d  653 (764)
T KOG0480|consen  612 LESLIRLSEARARVECRDEVTKEDVEEAVELLKKSIVRVEGD  653 (764)
T ss_pred             HHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHhhheeeccc
Confidence            999999999999999999999999999999999998765543

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=100.00  E-value=3.9e-86  Score=761.90  Aligned_cols=458  Identities=38%  Similarity=0.601  Sum_probs=402.9

Q ss_pred             CCCCCCc--------------------eEEEEEEcccccccccCCCeEEEEEEEEeccCCCCccccccccceeEEEEEEE
Q psy17703          1 MPAGQTP--------------------HSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVH   60 (720)
Q Consensus         1 VP~G~~P--------------------rsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~~~~~~~~~~~~~~~~i~~~~   60 (720)
                      ||+|++|                    |+++|++++||||+|+|||||+|||||++.+.+.++..+..+++|.+|++++|
T Consensus       319 vp~G~~P~~~~~~~~~~~~~~~~~~~~rsi~v~l~dDLVD~v~PGDrV~VtGIl~~~~~~~~~~~~~~~~~~~~yl~~~~  398 (915)
T PTZ00111        319 LNNPDKDGLDNSVDNSGLNGEIYMKDNEVINLNLYDDLIDSVKTGDRVTVVGILKVTPIRTSTTRRTLKSLYTYFVNVIH  398 (915)
T ss_pred             CCCCCCCccccccccccccccccccCCceEEEEEecchhccCCCCCEEEEEEEEEeccccccccccccccccceEEEEEE
Confidence            6999999                    99999999999999999999999999999887666655666789999999999


Q ss_pred             EEEecccccc------cccccCCCCChHHHHHHHhhhcCCcHHHHHHHhhchhccCchhhHHHHHHHhhCCccccccccc
Q psy17703         61 FRKIDATRLY------KQDEKEHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETI  134 (720)
Q Consensus        61 ~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk~lll~L~GG~~k~~~~~~  134 (720)
                      ++..+.....      +....+..||++++++|++|+++|++|++|++||||+||||++||+||||+||||++|....+.
T Consensus       399 i~~~~~~~~~~~~~~~~~~~~~~~~t~ed~~~I~~ls~~p~i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~  478 (915)
T PTZ00111        399 VKVINSTNANQPEKGLKYLGNENDFSDLQVYKILELSRNPMIYRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNK  478 (915)
T ss_pred             EEEeccccccccccccccccccccCCHHHHHHHHHHhcCHHHHHHHHHHhCCeEECCHHHHHHHHHHHhcCCcccccccc
Confidence            9876432111      0011334699999999999999999999999999999999999999999999999988632110


Q ss_pred             ccCCcccccCCCcccCCCCCccccccCCCCCcCCccccCCCchhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhC
Q psy17703        135 SDRMSEIDLASPLNYGTPSSIGSLRTPRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCY  214 (720)
Q Consensus       135 ~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~  214 (720)
                      .                                                                               
T Consensus       479 ~-------------------------------------------------------------------------------  479 (915)
T PTZ00111        479 S-------------------------------------------------------------------------------  479 (915)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             hhhHHHHHHHHHHHHHHhhCcccccccceEEEecCCccccccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccC
Q psy17703        215 PQEVIPILDMGVNEYFFERHPAAVLEHQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVC  294 (720)
Q Consensus       215 P~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~C  294 (720)
                                          |+..                               ..+.-+                   
T Consensus       480 --------------------~dg~-------------------------------~~~~~i-------------------  489 (915)
T PTZ00111        480 --------------------PDAC-------------------------------YKVDNF-------------------  489 (915)
T ss_pred             --------------------cccc-------------------------------cccccc-------------------
Confidence                                0000                               000000                   


Q ss_pred             CceeeeeeccCcccCCccCCCCCCCCcceeeccCCccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCcc
Q psy17703        295 NYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQY  374 (720)
Q Consensus       295 g~~~~~~~~~~~~~~p~~C~~C~~~~~~~~~~~~s~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~  374 (720)
                               +                                       |++||||+|+||||||++|+++++.+||..|
T Consensus       490 ---------R---------------------------------------gdihVLLvGDPGTGKSqLAr~Ih~lspR~~y  521 (915)
T PTZ00111        490 ---------R---------------------------------------GIINVLLCGDPGTAKSQLLHYTHLLSPRSIY  521 (915)
T ss_pred             ---------c---------------------------------------CCceEEEeCCCCccHHHHHHHHHHhCCcccc
Confidence                     0                                       7999999999999999999999999999999


Q ss_pred             ccCCccccccccceee-cCccccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCce
Q psy17703        375 TSGKGSSAVGLTAYIT-KDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNART  453 (720)
Q Consensus       375 ~~g~~ss~~glta~~~-~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~  453 (720)
                      ++|.+++.+|+++... .+..+|+|.+++|++++|++|+||||||++|++..|.+||++||+|+++|+|+|+.++++++|
T Consensus       522 tsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~  601 (915)
T PTZ00111        522 TSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAET  601 (915)
T ss_pred             CCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCe
Confidence            9999999999999876 455678999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHHHhhc-------------------------
Q psy17703        454 SILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL-------------------------  508 (720)
Q Consensus       454 ~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i-------------------------  508 (720)
                      +||||+||.+|+||+.+++.+|++||++|||||||+|.+.|.++++.|+.|+.|+                         
T Consensus       602 rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~  681 (915)
T PTZ00111        602 AILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTM  681 (915)
T ss_pred             EEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchhccccc
Confidence            9999999999999999999999999999999999999999999999999998765                         


Q ss_pred             ----------------chhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcC------------------------C
Q psy17703        509 ----------------DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLG------------------------A  548 (720)
Q Consensus       509 ----------------~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~------------------------~  548 (720)
                                      +.++|++||+|||++++|+|+++|.+.|.++|++||+..                        .
T Consensus       682 ~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~  761 (915)
T PTZ00111        682 HVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSS  761 (915)
T ss_pred             cccccccccccccCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccc
Confidence                            356799999999999999999999999999999999731                        2


Q ss_pred             CCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHHHHHHhccCCCCCcceeeeeccCCCHHHHHHHHHHH
Q psy17703        549 GRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLELT  628 (720)
Q Consensus       549 ~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~~l~~~~~d~~~g~~d~~~~~~g~~~~~~~~~~~~~  628 (720)
                      +.+.+++|+||||+|||||+|+|||++++.|+.+|+++|++|++.+++++++||++|.+|++++.+|.+++++++++.+.
T Consensus       762 ~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~~sl~~~~~DpetG~iD~d~~~~G~s~~~r~~~~~~~  841 (915)
T PTZ00111        762 GTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVKSSTFQSLVDPTTGKIDFDQLHQGITTNKMQQLNQMY  841 (915)
T ss_pred             cCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHHHHHhhhcccccCCcccceeeccCCcHHHHHHHHHHH
Confidence            23468999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC---CCcchhHHHHHHHHhh
Q psy17703        629 AALKKLVILLG---PSVTVTQQKLIMDLKG  655 (720)
Q Consensus       629 ~~i~~~~~~~~---~~~~~~~~~i~~~~~~  655 (720)
                      +.|++++....   ....+++++|++.+.+
T Consensus       842 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~  871 (915)
T PTZ00111        842 EQVLSVLTRSSNQDSNKSLDLNEVLSLCHK  871 (915)
T ss_pred             HHHHHHHHhhhccccCCceeHHHHHHHHHh
Confidence            98988875432   1235888999887743

>KOG0479|consensus

Probab=100.00  E-value=1.1e-87  Score=719.30  Aligned_cols=380  Identities=46%  Similarity=0.725  Sum_probs=354.5

Q ss_pred             CCCCCceEEEEEEcccccccccCCCeEEEEEEEEeccCCCCccccccccceeEEEEEEEEEEecccccccccccCCCCCh
Q psy17703          2 PAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQDEKEHKFPP   81 (720)
Q Consensus         2 P~G~~Prsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   81 (720)
                      |+||+||||+|++++||||+|||||||.|.||||+.|...+.   +..+.|+|.+.+++|....       .+....|++
T Consensus       207 PaGQLPRSVDvilddDLVD~~KPGDRV~ivG~yr~Lp~k~~g---~tsg~FRTvliaNni~~l~-------ke~~~~~t~  276 (818)
T KOG0479|consen  207 PAGQLPRSVDVILDDDLVDRVKPGDRVNIVGIYRSLPGKSNG---NTSGTFRTVLIANNIELLS-------KEAAPDFTD  276 (818)
T ss_pred             CCCCCCcceeEEecccccccCCCCCeeEEEEEEeeccCccCC---cccceeEEEEEeccHHhhc-------ccccccCCh
Confidence            999999999999999999999999999999999999975433   3467899999998886543       123567999


Q ss_pred             HHHHHHHhhhcCCcHHHHHHHhhchhccCchhhHHHHHHHhhCCcccccccccccCCcccccCCCcccCCCCCccccccC
Q psy17703         82 ERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSSIGSLRTP  161 (720)
Q Consensus        82 ~~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk~lll~L~GG~~k~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~  161 (720)
                      +++..|++||+..|+|++|++|+|||||||+.|||||||+|+||+.|++..|+.+|                        
T Consensus       277 ~Di~~i~klsk~kdiFdlLa~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlR------------------------  332 (818)
T KOG0479|consen  277 EDIRNIKKLSKKKDIFDLLARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLR------------------------  332 (818)
T ss_pred             hhHHHHHHHHhcCCHHHHHhhccCcccccHHHHHHHHHHHHhccceeccCCCceec------------------------
Confidence            99999999999999999999999999999999999999999999999986332111                        


Q ss_pred             CCCCcCCccccCCCchhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCccccccc
Q psy17703        162 RSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLEH  241 (720)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~~~  241 (720)
                                                                                                      
T Consensus       333 --------------------------------------------------------------------------------  332 (818)
T KOG0479|consen  333 --------------------------------------------------------------------------------  332 (818)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceEEEecCCccccccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCCCCCCCc
Q psy17703        242 QIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHC  321 (720)
Q Consensus       242 ~~~~~~~~~~~~~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~  321 (720)
                                                                                                      
T Consensus       333 --------------------------------------------------------------------------------  332 (818)
T KOG0479|consen  333 --------------------------------------------------------------------------------  332 (818)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeccCCccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeee
Q psy17703        322 FSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQ  401 (720)
Q Consensus       322 ~~~~~~~s~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~  401 (720)
                                            |||||||+|||.|+||||+||+.+.+|+.+-++|+||+++||||+++.|..+|+..+|
T Consensus       333 ----------------------GDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD~eTGERRLE  390 (818)
T KOG0479|consen  333 ----------------------GDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTDQETGERRLE  390 (818)
T ss_pred             ----------------------cceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEeeccccchhhhh
Confidence                                  7999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChh
Q psy17703        402 TGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHT  481 (720)
Q Consensus       402 ~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~a  481 (720)
                      +|+++|||.||+||||||||++-++.++||+||||+|+|+|+||+++||+||+|+||+||.+|+|+.+++..+|+.||++
T Consensus       391 AGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDS  470 (818)
T KOG0479|consen  391 AGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDS  470 (818)
T ss_pred             cCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccceeEEEecCCChHHHHHHHHhhc-----------------------------------------------------
Q psy17703        482 LLSRFDLIFLLLDPQSEQFDARLARHL-----------------------------------------------------  508 (720)
Q Consensus       482 LlsRFdli~~l~d~~~~~~d~~la~~i-----------------------------------------------------  508 (720)
                      |||||||+|.+.|..+.+.|+.++.|+                                                     
T Consensus       471 LLSRFDLlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~k~  550 (818)
T KOG0479|consen  471 LLSRFDLLFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHGKAKQ  550 (818)
T ss_pred             HHhhhcEEEEEeccccchHHHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccccccccchhHhhhhhhhhccccc
Confidence            999999999999999999999999987                                                     


Q ss_pred             ------chhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCC---CCCcccCHHHHHHHHHHHHHHHHHcCCCCC
Q psy17703        509 ------DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAG---RGRISAYPRQLESLIRLSEAHAKMRYSETV  579 (720)
Q Consensus       509 ------~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~---~~~~~~t~R~le~lirla~A~A~l~~~~~V  579 (720)
                            ..+++|+||.|||.+++|+|++++.+.|.+.|..+|.....   ....|+|+|+||.|||||.|||++++++.|
T Consensus       551 ~~~k~lti~F~rKYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlSk~V  630 (818)
T KOG0479|consen  551 QHEKLLTIDFMRKYIHYAKSRIKPKLTQEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARLSKVV  630 (818)
T ss_pred             cccceeeHHHHHHHHHHHHhhcCccccHHHHHHHHHHHhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhhccee
Confidence                  45789999999999999999999999999999999997653   456889999999999999999999999999


Q ss_pred             CHHhHHHHHHHHHHHHHH
Q psy17703        580 EVQDVDEAWRLHREALKQ  597 (720)
Q Consensus       580 ~~~Dv~~Ai~l~~~~l~~  597 (720)
                      +.+|++.|+.|++.++..
T Consensus       631 ~~~DAe~A~~Ll~fA~f~  648 (818)
T KOG0479|consen  631 EKDDAEAAVNLLRFALFK  648 (818)
T ss_pred             ehhhHHHHHHHHHHHHHh
Confidence            999999999999888744

>KOG0477|consensus

Probab=100.00  E-value=4.7e-83  Score=688.13  Aligned_cols=383  Identities=43%  Similarity=0.695  Sum_probs=357.2

Q ss_pred             CCCCCCceEEEEEEcccccccccCCCeEEEEEEEEeccCCCCccccccccceeEEEEEEEEEEecccccccccccCCCCC
Q psy17703          1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQDEKEHKFP   80 (720)
Q Consensus         1 VP~G~~Prsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   80 (720)
                      ||+|++|||.+|++..||||+|+|||.|.|||||+. ++.++-..++++.+|.|.++++|+.+.+.      .....++|
T Consensus       351 v~~GrlPRsk~vILl~DLvD~~kpGdEievTGIy~n-n~d~sLN~kngFpvfatvi~ANhV~~k~~------~~~~~~lt  423 (854)
T KOG0477|consen  351 VPAGRLPRSKEVILLADLVDSCKPGDEIEVTGIYTN-NFDGSLNTKNGFPVFATVIEANHVVKKDG------KFDVDELT  423 (854)
T ss_pred             CCCCccccchhheehhhhhhhcCCCcceEEeeeecc-cccccccccCCccccceeheehhhhhhcc------ccchhHHh
Confidence            799999999999999999999999999999999984 45555555678899999999999987542      12234689


Q ss_pred             hHHHHHHHhhhcCCcHHHHHHHhhchhccCchhhHHHHHHHhhCCcccccccccccCCcccccCCCcccCCCCCcccccc
Q psy17703         81 PERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSSIGSLRT  160 (720)
Q Consensus        81 ~~~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk~lll~L~GG~~k~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~  160 (720)
                      +|+.+.|.+++++|.|-+++.+|||||||||++||.|++|.||||++|+...+++                         
T Consensus       424 ded~k~i~~lskd~~i~~rIiaSiaPsIyGh~~VK~AvAlaLfGGv~kn~~~khk-------------------------  478 (854)
T KOG0477|consen  424 DEDFKEIWELSKDPPIKERIIASIAPSIYGHEDVKRAVALALFGGVPKNPGGKHK-------------------------  478 (854)
T ss_pred             HHHHHHHHHHhcCccHHHHHHHhhCchhhchHHHHHHHHHHHhcCCccCCCCCce-------------------------
Confidence            9999999999999999999999999999999999999999999999998421100                         


Q ss_pred             CCCCCcCCccccCCCchhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCcccccc
Q psy17703        161 PRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLE  240 (720)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~~  240 (720)
                                                                                                      
T Consensus       479 --------------------------------------------------------------------------------  478 (854)
T KOG0477|consen  479 --------------------------------------------------------------------------------  478 (854)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cceEEEecCCccccccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCCCCCCC
Q psy17703        241 HQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNH  320 (720)
Q Consensus       241 ~~~~~~~~~~~~~~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~  320 (720)
                                                        +                            +                
T Consensus       479 ----------------------------------v----------------------------R----------------  480 (854)
T KOG0477|consen  479 ----------------------------------V----------------------------R----------------  480 (854)
T ss_pred             ----------------------------------e----------------------------c----------------
Confidence                                              0                            1                


Q ss_pred             cceeeccCCccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceee
Q psy17703        321 CFSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVL  400 (720)
Q Consensus       321 ~~~~~~~~s~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~  400 (720)
                                             |+|||||+|||||||||+++|+++.++|+++++|.|++++|+|+++.+++.+++|++
T Consensus       481 -----------------------GDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTL  537 (854)
T KOG0477|consen  481 -----------------------GDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTL  537 (854)
T ss_pred             -----------------------cceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeee
Confidence                                   799999999999999999999999999999999999999999999999999999999


Q ss_pred             ecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCCh
Q psy17703        401 QTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPH  480 (720)
Q Consensus       401 ~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~  480 (720)
                      ++|+|+|||+|||||||||||++.++..+||+||||.|+|+|+||.++|++||++|||+||.+|+||+..++.+|++|..
T Consensus       538 EaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~lte  617 (854)
T KOG0477|consen  538 EAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTE  617 (854)
T ss_pred             ccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccceeEEEecCCChHHHHHHHHhhc-----------------------------chhHHHHHHHHHHhhcCCcchHH
Q psy17703        481 TLLSRFDLIFLLLDPQSEQFDARLARHL-----------------------------DITVLRDYIAYAQEHLSPTLSEE  531 (720)
Q Consensus       481 aLlsRFdli~~l~d~~~~~~d~~la~~i-----------------------------~~~~l~~~i~~ar~~~~p~ls~e  531 (720)
                      |++||||+.+++.|..+...|+++|+++                             +.++||+||.|||.+++|+|.+-
T Consensus       618 PIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~  697 (854)
T KOG0477|consen  618 PILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQM  697 (854)
T ss_pred             chhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccc
Confidence            9999999999999999999999999765                             56899999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHHHHH
Q psy17703        532 ASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALK  596 (720)
Q Consensus       532 a~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~~l~  596 (720)
                      -.+.+...|.+||+.+...+++++|.|.+|+++|+++|||+|++++.|+.+|+..||+.+.+++-
T Consensus       698 d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ldSfi  762 (854)
T KOG0477|consen  698 DMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVMLDSFI  762 (854)
T ss_pred             cHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998877754

>smart00350 MCM minichromosome maintenance proteins

Probab=100.00  E-value=7.6e-72  Score=633.43  Aligned_cols=389  Identities=54%  Similarity=0.840  Sum_probs=346.6

Q ss_pred             CCCCCCceEEEEEEcccccccccCCCeEEEEEEEEeccCCCCccccccccceeEEEEEEEEEEeccccccccc-ccCCCC
Q psy17703          1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQD-EKEHKF   79 (720)
Q Consensus         1 VP~G~~Prsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~   79 (720)
                      +|.|++||+++|++++||||+|+|||+|+|||||++.+...........+.|.+|++++++++.+........ .....|
T Consensus        97 ~p~G~~Prsi~v~l~~dLvd~~~PGD~V~i~Gi~~~~~~~~~~~~~~~~~~~~~~l~a~~i~~~~~~~~~~~~~~~~~~~  176 (509)
T smart00350       97 VPAGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNIPYGFKLNTVKGLPVFATYIEANHVRKLDYKRSFEDCSFSVQSL  176 (509)
T ss_pred             CCCCCCCcEEEEEEcccccCcccCCCEEEEEEEEEeeccccccccCCCcceeeEEEEEeEEEEccccccccccccccccC
Confidence            6899999999999999999999999999999999987632211112223458999999999886533211110 012369


Q ss_pred             ChHHHHHHHhhhcCCcHHHHHHHhhchhccCchhhHHHHHHHhhCCcccccccccccCCcccccCCCcccCCCCCccccc
Q psy17703         80 PPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSSIGSLR  159 (720)
Q Consensus        80 ~~~~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk~lll~L~GG~~k~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~  159 (720)
                      |++++++|++++++|++|++|++||||+||||+++|+||+|+||||+.+...++++                        
T Consensus       177 ~~~~~~~i~~~~~~~~~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~------------------------  232 (509)
T smart00350      177 SDEEEEEIRKLSKDPDIYERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMK------------------------  232 (509)
T ss_pred             CHHHHHHHHHHhcCHHHHHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCcc------------------------
Confidence            99999999999999999999999999999999999999999999999876432110                        


Q ss_pred             cCCCCCcCCccccCCCchhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCccccc
Q psy17703        160 TPRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVL  239 (720)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~  239 (720)
                                                                                                      
T Consensus       233 --------------------------------------------------------------------------------  232 (509)
T smart00350      233 --------------------------------------------------------------------------------  232 (509)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccceEEEecCCccccccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCCCCCC
Q psy17703        240 EHQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTN  319 (720)
Q Consensus       240 ~~~~~~~~~~~~~~~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~  319 (720)
                                                         +                            +               
T Consensus       233 -----------------------------------~----------------------------r---------------  234 (509)
T smart00350      233 -----------------------------------I----------------------------R---------------  234 (509)
T ss_pred             -----------------------------------c----------------------------c---------------
Confidence                                               0                            0               


Q ss_pred             CcceeeccCCccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCcccccee
Q psy17703        320 HCFSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMV  399 (720)
Q Consensus       320 ~~~~~~~~~s~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~  399 (720)
                                              +++||||+|+||||||++|+++++.+|+..|++|.+.+.+|+++...+++.+++|.
T Consensus       235 ------------------------~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~  290 (509)
T smart00350      235 ------------------------GDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFT  290 (509)
T ss_pred             ------------------------ccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEE
Confidence                                    68999999999999999999999999999999999889999999888888889999


Q ss_pred             eecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCC
Q psy17703        400 LQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLP  479 (720)
Q Consensus       400 ~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~  479 (720)
                      +++|++++|++|+||||||++|++..|.+|+++||+++++++|+|+.+++|++|++|||+||.+|+|++.+++.+|++||
T Consensus       291 ~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~  370 (509)
T smart00350      291 LEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLP  370 (509)
T ss_pred             ecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccceeEEEecCCChHHHHHHHHhhc-------------------chhHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Q psy17703        480 HTLLSRFDLIFLLLDPQSEQFDARLARHL-------------------DITVLRDYIAYAQEHLSPTLSEEASQRLIQTY  540 (720)
Q Consensus       480 ~aLlsRFdli~~l~d~~~~~~d~~la~~i-------------------~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y  540 (720)
                      ++++|||||+|.+.|+++++.|..|+.|+                   +.+.|++||.|||+++.|.+++++.+.|.++|
T Consensus       371 ~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y  450 (509)
T smart00350      371 APILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAY  450 (509)
T ss_pred             hHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999998874                   45789999999999899999999999999999


Q ss_pred             HHhhhcCCCC---CCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHHHH
Q psy17703        541 VDMRKLGAGR---GRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREAL  595 (720)
Q Consensus       541 ~~lr~~~~~~---~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~~l  595 (720)
                      .++|..+...   ..+++|+|++++|+|+|+|+|+|++++.|+++|+.+|++|+++++
T Consensus       451 ~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~s~  508 (509)
T smart00350      451 VDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRESI  508 (509)
T ss_pred             HHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHHhh
Confidence            9999865432   468899999999999999999999999999999999999998774

>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite

Probab=100.00  E-value=3.6e-68  Score=572.31  Aligned_cols=253  Identities=59%  Similarity=0.881  Sum_probs=216.3

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD  423 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~  423 (720)
                      +++||||+||||||||+|++++++++||++|++|++++.+|+|+++.+++.+++|.+++|++++||+|||||||||+|++
T Consensus        56 ~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~  135 (331)
T PF00493_consen   56 GNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKE  135 (331)
T ss_dssp             -S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--C
T ss_pred             cccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHH
Q psy17703        424 TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDAR  503 (720)
Q Consensus       424 ~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~  503 (720)
                      +++.+||++||+|+++++|+|+.+++|++|+|+||+||..|+|+..+++.+|+++|++|+|||||+|.+.|+++++.|+.
T Consensus       136 ~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~  215 (331)
T PF00493_consen  136 DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDER  215 (331)
T ss_dssp             HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHH
T ss_pred             hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhc----------------------chhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCC-CCCCcccCHHHH
Q psy17703        504 LARHL----------------------DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGA-GRGRISAYPRQL  560 (720)
Q Consensus       504 la~~i----------------------~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~-~~~~~~~t~R~l  560 (720)
                      ++.|+                      +.+++++||.|||+++.|.+++++.+.|.++|+++|+... .....++|+|+|
T Consensus       216 la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~L  295 (331)
T PF00493_consen  216 LAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQL  295 (331)
T ss_dssp             HHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCC
T ss_pred             cceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhH
Confidence            99876                      3567899999999889999999999999999999999763 356788999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHHHHH
Q psy17703        561 ESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALK  596 (720)
Q Consensus       561 e~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~~l~  596 (720)
                      |+|+|||+|+|||++++.|+++|+.+|++|++.++|
T Consensus       296 eSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~~Sl~  331 (331)
T PF00493_consen  296 ESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFEESLK  331 (331)
T ss_dssp             CHHHHHHHHHHHCTTSSECSHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhccCceeHHHHHHHHHHHHhhcC
Confidence            999999999999999999999999999999999885

; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.

>KOG0482|consensus

Probab=100.00  E-value=1.7e-47  Score=405.16  Aligned_cols=406  Identities=31%  Similarity=0.445  Sum_probs=264.5

Q ss_pred             hHHHHHHHhcCCcEEEEechhHhhhc--HHHHHHHHhChhhHHHHHHHHHHHHHHhhC----------------------
Q psy17703        179 DRRIRQIFSLEDPVLNVNLAHLAKFD--SQLCQQLVCYPQEVIPILDMGVNEYFFERH----------------------  234 (720)
Q Consensus       179 ~~~~r~~~~~~~~~l~id~~~l~~~d--~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~----------------------  234 (720)
                      -..++.+...+..++.||++|++.||  .+|...+..+-..+..+|..++.+++.+..                      
T Consensus        34 ~~~L~eia~Re~~ai~vdldDi~~~d~~~~l~~~i~~Na~ry~~lf~~~vdellp~~~~~~~~~~d~lDv~~~qR~~~~~  113 (721)
T KOG0482|consen   34 MNQLQEIANREQNAIEVDLDDIAEYDDATELVGAIESNARRYVELFSDAVDELLPEPTGEIPYGDDVLDVYMEQRLMRNE  113 (721)
T ss_pred             HHHHHHHhcccceeEEEehHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCccHHHHHHHHHHHhcc
Confidence            33456666778889999999999998  478899999999999999999988754321                      


Q ss_pred             ---cccc---------cc--cceEEEecCCccccccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeee
Q psy17703        235 ---PAAV---------LE--HQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTV  300 (720)
Q Consensus       235 ---~~~~---------~~--~~~~~~~~~~~~~~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~  300 (720)
                         |...         +.  .++..++....+...+|++++++||+||+|+|||+|+|+|+|.+.+++|.|..||+|+++
T Consensus       114 ~~~p~~~~~~~~fP~~l~rryelyfk~~~~~kp~svR~vka~~iG~LvtvrGIVTR~S~VKP~m~VatYtCd~CGaE~yQ  193 (721)
T KOG0482|consen  114 TRDPELEDKREQFPSELLRRYELYFKPLSNNKPYSVREVKADHIGSLVTVRGIVTRVSDVKPSMVVATYTCDQCGAETYQ  193 (721)
T ss_pred             ccCccccchhhcCCHHHhhhheeeecccccCCccchhhhhhhhccceEEEEEEEEeccccccceEEEEEecccccHhhhc
Confidence               1100         00  123333444456789999999999999999999999999999999999999999999999


Q ss_pred             eeccCcccCCccCCC--CCCC---CcceeeccCCccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccc
Q psy17703        301 EIDRGRIHEPTLCTN--CSTN---HCFSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYT  375 (720)
Q Consensus       301 ~~~~~~~~~p~~C~~--C~~~---~~~~~~~~~s~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~  375 (720)
                      ++.+..|.++..||+  |..+   +.+.++...|+|+++|++|+||..+++++                  ...||+...
T Consensus       194 eV~s~~F~pl~~CpS~eC~~n~~~G~L~lqtRgSKFikfQe~kmQEls~qVPv------------------G~IPRsltv  255 (721)
T KOG0482|consen  194 EVNSRTFTPLSECPSEECRTNKAGGRLYLQTRGSKFIKFQEVKMQELSDQVPV------------------GHIPRSLTV  255 (721)
T ss_pred             cccCccccchhhCChHHhhhcccCCeEEEEecccccchhhhhhHHHHhccCCC------------------CccCceeEE
Confidence            999999999999997  8754   67999999999999999999999866644                  112442211


Q ss_pred             c--------CCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceE-eeeccCeE
Q psy17703        376 S--------GKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTL-SIAKAGII  446 (720)
Q Consensus       376 ~--------g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~v-si~k~g~~  446 (720)
                      .        ......+..++.+..-+.+|-..+.+|.+.  +                     ..+|-..+ .+      
T Consensus       256 ~~~ge~tr~~~PGDvV~vsGiFLP~pytGfr~~~aGLla--d---------------------tYLeAh~v~~~------  306 (721)
T KOG0482|consen  256 HVYGEMTRKCQPGDVVVVSGIFLPIPYTGFRALKAGLLA--D---------------------TYLEAHRVVQI------  306 (721)
T ss_pred             EEecccceecCCCCEEEEeeeecccchhhHHHHHhhhHH--H---------------------HHHHHhhhhhh------
Confidence            0        011222222222233333332222322211  0                     01111111 11      


Q ss_pred             EeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCC
Q psy17703        447 CQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSP  526 (720)
Q Consensus       447 ~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p  526 (720)
                                   |-.+                       | .+.......++..+.++.. +     -|-..|+. +.|
T Consensus       307 -------------nk~~-----------------------~-~~~~~~~~~~~~~~~~~~~-d-----~yekLa~S-iAP  342 (721)
T KOG0482|consen  307 -------------NKKY-----------------------D-NIEKTGELEPEELELIAEG-D-----FYEKLAAS-IAP  342 (721)
T ss_pred             -------------cccc-----------------------c-cccccccccHHHHHHhhcc-c-----HHHHHHHh-hch
Confidence                         1000                       0 0011111111111111110 0     01122232 445


Q ss_pred             cc--hHHHHHHHHHHHHHhhhcCCCC---CCcccCHHHHHHHHHHHHHHHHHcCC-CCCCHHhHHHHHHHHHHHHHHhc-
Q psy17703        527 TL--SEEASQRLIQTYVDMRKLGAGR---GRISAYPRQLESLIRLSEAHAKMRYS-ETVEVQDVDEAWRLHREALKQSA-  599 (720)
Q Consensus       527 ~l--s~ea~~~l~~~y~~lr~~~~~~---~~~~~t~R~le~lirla~A~A~l~~~-~~V~~~Dv~~Ai~l~~~~l~~~~-  599 (720)
                      .+  .++.+++|.-..+    ++..+   .++.                  +|+. +....+|...|.+   +.|+.+. 
T Consensus       343 EIyGheDVKKaLLLlLV----Ggvd~~~~dGMK------------------IRGdINicLmGDPGVAKS---QLLkyi~r  397 (721)
T KOG0482|consen  343 EIYGHEDVKKALLLLLV----GGVDKSPGDGMK------------------IRGDINICLMGDPGVAKS---QLLKYISR  397 (721)
T ss_pred             hhccchHHHHHHHHHhh----CCCCCCCCCCce------------------eecceeEEecCCCchhHH---HHHHHHHh
Confidence            44  3444444442222    11111   1111                  1111 2345688888887   4445442 


Q ss_pred             cCCCCCcceeeeeccCCCHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHhhcccccCCCcccccccccCChhhHH
Q psy17703        600 TDPLSGKIDVSILTTGVSSAARQRQLELTAALKKLVILLGPSVTVTQQKLIMDLKGALVLADSGVCCIDEFDKMSDTTRS  679 (720)
Q Consensus       600 ~d~~~g~~d~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~alv~ad~~~~~idE~~~l~~~~r~  679 (720)
                      ..|+      ++|+||.++|..    +|++++.+    +.-+..+.    +  .+|++++||+|+|||||||||.+.+|+
T Consensus       398 lapR------gvYTTGrGSSGV----GLTAAVmk----DpvTgEM~----L--EGGALVLAD~GICCIDEfDKM~e~DRt  457 (721)
T KOG0482|consen  398 LAPR------GVYTTGRGSSGV----GLTAAVMK----DPVTGEMV----L--EGGALVLADGGICCIDEFDKMDESDRT  457 (721)
T ss_pred             cCcc------cceecCCCCCcc----ccchhhhc----CCCCCeeE----e--ccceEEEccCceEeehhhhhhhhhhhH
Confidence            3444      789999999998    47766542    22111221    1  289999999999999999999999999


Q ss_pred             HHHHhhhcceEEeeecceeEEEcccceEEeecCCCCCCCCC
Q psy17703        680 ILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNT  720 (720)
Q Consensus       680 ~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~~~~~  720 (720)
                      +|||+||||+|||+||||+++|||||||||||||.|||||+
T Consensus       458 AIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnp  498 (721)
T KOG0482|consen  458 AIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNP  498 (721)
T ss_pred             HHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCc
Confidence            99999999999999999999999999999999999999995

>KOG0481|consensus

Probab=100.00  E-value=2.7e-46  Score=396.44  Aligned_cols=393  Identities=31%  Similarity=0.456  Sum_probs=266.2

Q ss_pred             hhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhC---cc-cccccceEEEecCCccc
Q psy17703        178 TDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERH---PA-AVLEHQIQVRPFNAKKT  253 (720)
Q Consensus       178 ~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~---~~-~~~~~~~~~~~~~~~~~  253 (720)
                      |...++.=+..++++|+|+++||.+||.+|++.|...|.++|++||+|++++..+-.   |. ....+++|+.+....+.
T Consensus        47 Yrd~L~~N~~~~~y~L~v~le~L~~fdedl~~~L~~~P~~~lp~fEeAa~~Vad~i~~~~~~~E~~~~d~Qv~L~sda~p  126 (729)
T KOG0481|consen   47 YRDQLKRNYNLGEYSLEVELEDLISFDEDLADKLSKQPADHLPLFEEAAKEVADEITRPRPSGEEVLHDIQVLLTSDANP  126 (729)
T ss_pred             hHHHHHhcccccceEEEEEHHHhhccchHHHHHHHhChHhHHHHHHHHHHHHHhhhcCCCcCCCccceeeEEEEecCCCc
Confidence            444456667788999999999999999999999999999999999999998875432   22 23346799999988889


Q ss_pred             cccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeec-cC--cccCCccCC-------CCCCCCcce
Q psy17703        254 RNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEID-RG--RIHEPTLCT-------NCSTNHCFS  323 (720)
Q Consensus       254 ~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~-~~--~~~~p~~C~-------~C~~~~~~~  323 (720)
                      .++|+|+++++.|||.++||++.+|.|+.+.+....+|++|.+....... .|  .+..|+.|.       .|.- ++|.
T Consensus       127 ~~iR~l~s~~vsklVki~GIiiaAS~v~~kat~l~l~CrnC~~t~~~~~~~pgl~g~~lPR~C~~~~~~k~~Cp~-DPyi  205 (729)
T KOG0481|consen  127 ISIRQLKSDHVSKLVKISGIIIAASAVSAKATRLSLVCRNCRHTRPNVIMRPGLEGYALPRKCDTPQAGKPKCPL-DPYI  205 (729)
T ss_pred             ccHhHhhhHhhhhheeeccEEEEeeeeeecceEEEEEeccccccccceecCCCccccccccccCCcccCCCCCCC-CCEE
Confidence            99999999999999999999999999999999999999999998855433 22  578899996       4775 7999


Q ss_pred             eeccCCccchhhhhhhhcCCCCc-------cEEEEcCCCCHHHHHHHHHHhhC-CC------Ccccc---CCcccccccc
Q psy17703        324 LVHNRSHFTDKQLVRLQETPAEI-------NILLCGDPGTSKSQLLSYVYDLV-PR------SQYTS---GKGSSAVGLT  386 (720)
Q Consensus       324 ~~~~~s~~~d~Q~iklQE~pg~i-------~vLL~G~PGtGKS~ll~~va~~~-pr------~~~~~---g~~ss~~glt  386 (720)
                      +.+++|+|+|+|.+|+||.|.++       |++|.-|         |++.+.. |.      ++|.-   +..++. +-.
T Consensus       206 i~pdks~~vD~QtLKLQE~pe~VP~GE~PRhl~L~~d---------RyL~~kvvPG~RvtI~GIYsI~~~~~~~~s-~k~  275 (729)
T KOG0481|consen  206 IMPDKSKCVDQQTLKLQELPEDVPVGEMPRHLQLFCD---------RYLTNKVVPGNRVTIMGIYSIKKFGSTSSS-DKS  275 (729)
T ss_pred             EcccccceeehhheehhhCcccCCcCcCcchhhhhhh---------HHHhccccCCceEEEEEEEEeeeccccCCC-Ccc
Confidence            99999999999999999999776       4544444         4444433 32      12211   111111 111


Q ss_pred             ceeecCccccceeeecceeeecCC-ce----ee-cc---ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEe
Q psy17703        387 AYITKDPETRQMVLQTGALVLADS-GV----CC-ID---EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILA  457 (720)
Q Consensus       387 a~~~~~~~~~~~~~~~G~l~lad~-gI----~~-ID---Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iia  457 (720)
                      +--.+.++.+..-++    .-.++ |.    .| -|   ||-+++.  ...+++.+.   -+|+..              
T Consensus       276 ~v~iR~PyirVvGi~----~ds~~ss~~~~~~ft~eEEEeFk~la~--~~d~Ye~is---~sIAPS--------------  332 (729)
T KOG0481|consen  276 GVGIRTPYIRVVGIQ----DDSEGSSRSSATMFTPEEEEEFKKLAA--SPDVYERIS---KSIAPS--------------  332 (729)
T ss_pred             ceeeecceEEEEEEE----eccCCccccCcccCChhHHHHHHHHhc--CccHHHHHh---hccCch--------------
Confidence            111122221111111    00000 10    11 11   2222221  112333321   222210              


Q ss_pred             cccCCCCCCCCCccccc------ccCCChhhhccceeEEEec-CCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchH
Q psy17703        458 AANPCDSQWNTSKTIID------NIRLPHTLLSRFDLIFLLL-DPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSE  530 (720)
Q Consensus       458 aaNp~~g~~~~~~~~~~------~~~l~~aLlsRFdli~~l~-d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~  530 (720)
                          .+|.-|-.+.+.+      .-.||+.+..|-|+.+++. ||....                      .        
T Consensus       333 ----IfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAK----------------------S--------  378 (729)
T KOG0481|consen  333 ----IFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAK----------------------S--------  378 (729)
T ss_pred             ----hcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhH----------------------H--------
Confidence                1111111111111      1158888888999877765 554321                      0        


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHHHHHHhccCCCCCcceee
Q psy17703        531 EASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVS  610 (720)
Q Consensus       531 ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~~l~~~~~d~~~g~~d~~  610 (720)
                                                  ||...                               +        +-..++.
T Consensus       379 ----------------------------QlLKF-------------------------------v--------EkvsPIa  391 (729)
T KOG0481|consen  379 ----------------------------QLLKF-------------------------------V--------EKVSPIA  391 (729)
T ss_pred             ----------------------------HHHHH-------------------------------H--------HhcCceE
Confidence                                        11000                               0        0123568


Q ss_pred             eeccCCCHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHhhcccccCCCcccccccccCChhhHHHHHHhhhcceE
Q psy17703        611 ILTTGVSSAARQRQLELTAALKKLVILLGPSVTVTQQKLIMDLKGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTL  690 (720)
Q Consensus       611 ~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~  690 (720)
                      +|++|+++|+++    |++.+.    ++..+-.|-      ..+|++++||+|++||||||||.+++|.+|||+||||+|
T Consensus       392 VYTSGKGSSAAG----LTASV~----RD~~tReFy------lEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTI  457 (729)
T KOG0481|consen  392 VYTSGKGSSAAG----LTASVI----RDPSTREFY------LEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTI  457 (729)
T ss_pred             EEecCCCccccc----ceeeEE----ecCCcceEE------EecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhH
Confidence            999999999873    554332    222221221      138999999999999999999999999999999999999


Q ss_pred             EeeecceeEEEcccceEEeecCCCCCCCC
Q psy17703        691 SIAKAGIICQLNARTSILAAANPCDSQWN  719 (720)
Q Consensus       691 ~i~k~g~~~~l~~~~~~~~~~~p~~~~~~  719 (720)
                      ||+||||+++||+||||||||||.+||||
T Consensus       458 SIAKAGITT~LNSRtSVLAAANpvfGRyD  486 (729)
T KOG0481|consen  458 SIAKAGITTTLNSRTSVLAAANPVFGRYD  486 (729)
T ss_pred             HHhhhcceeeecchhhhhhhcCCcccccc
Confidence            99999999999999999999999999998

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

Probab=100.00  E-value=5.1e-46  Score=421.42  Aligned_cols=407  Identities=32%  Similarity=0.461  Sum_probs=263.0

Q ss_pred             CCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCcccccc-cceEEEecCCccccccccCCCcCCCce
Q psy17703        189 EDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLE-HQIQVRPFNAKKTRNLRHLNPEDIDQL  267 (720)
Q Consensus       189 ~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~l~~~~i~~l  267 (720)
                      ...++.||+.|+..||++|+..++.+|.++++.|+.++.++....+|+.... ..++++|.|.|....+|+|+++|+|||
T Consensus        29 ~~~s~~v~~~~~~~~~~~la~~l~~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iR~l~s~~igkL  108 (682)
T COG1241          29 INRSLEVDLSDLEEYDPELAGLLLENPEEIIPLFEKALDEIALLLFPEVDRSLKKIHVRFKNLPNRLSIRELRSEHIGKL  108 (682)
T ss_pred             cceEEEEEhHHhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHhcCccccccccceEEEecCCcCCcChhhCchhhCCcE
Confidence            3449999999999999999999999999999999999999988777666554 589999999999999999999999999


Q ss_pred             EEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCCCCC--CCcceeeccCCccchhhhhhhhcCCCC
Q psy17703        268 ITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCST--NHCFSLVHNRSHFTDKQLVRLQETPAE  345 (720)
Q Consensus       268 v~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~--~~~~~~~~~~s~~~d~Q~iklQE~pg~  345 (720)
                      |+|+|+|+|+|.|+|++++++|.|.+||++..+.+....+.+|..|++|..  .++|.++++.|.|.|||++++||.|+.
T Consensus       109 V~v~GiV~r~s~v~p~~~~~~~~C~~Cg~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~s~f~d~Q~vkiQE~pe~  188 (682)
T COG1241         109 VSVEGIVTRASEVRPRLKKAVFECPKCGREVEVEQSEFRVEPPRECENCGKFGKGPLKLVPRKSEFIDFQKVKIQELPEL  188 (682)
T ss_pred             EEEEEEEEecccccceeEEEEEEcCCCCCEEEEEeccccccCCccCCCccccCCCceEEecCcceeeeceEEEEecCccc
Confidence            999999999999999999999999999999999998888899999999932  357999999999999999999999976


Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHH
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTT  425 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~  425 (720)
                      +      |||.            .|+..-.        -+-...       .-...||.-+.. .||+.+-+-..++.  
T Consensus       189 ~------p~g~------------~Prs~~v--------il~~dl-------v~~~~pGdrV~i-tGi~~~~~~~~~~~--  232 (682)
T COG1241         189 V------PGGE------------LPRSIEV--------ILEDDL-------VDSVRPGDRVKI-TGVVRIVPSRSLSG--  232 (682)
T ss_pred             C------CCCC------------CCceEEE--------EEecCc-------ccccCCCCEEEE-EEEEeccccccccc--
Confidence            5      2221            2322110        000000       001122321111 23333322211111  


Q ss_pred             HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHHH
Q psy17703        426 RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLA  505 (720)
Q Consensus       426 ~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la  505 (720)
                               .....+            +.++.-+|.....             ..    ++  .+. ..+.+++.-..++
T Consensus       233 ---------~~~~~~------------~~~~~~a~~v~~~-------------~~----~~--~~~-~t~ed~e~i~ela  271 (682)
T COG1241         233 ---------RRKGPV------------FEIYLEANSVEKL-------------DK----RE--EVE-ITEEDEEEIKELA  271 (682)
T ss_pred             ---------ccCCce------------EEEEEEEEEEEec-------------cc----hh--hcc-CCHHHHHHHHHHh
Confidence                     000000            0001111111000             00    00  000 0111222222233


Q ss_pred             hhcchhHHHHHHHHHHhhcCCcc--hHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcC-CCCCCHH
Q psy17703        506 RHLDITVLRDYIAYAQEHLSPTL--SEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRY-SETVEVQ  582 (720)
Q Consensus       506 ~~i~~~~l~~~i~~ar~~~~p~l--s~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~-~~~V~~~  582 (720)
                      +.-+  .....   + ..+.|.+  .++..++|.-.   |- ++..+ ..+-              ..++|+ .+..-.+
T Consensus       272 k~~~--i~~~l---~-~SiaPsIyG~e~VKkAilLq---Lf-gGv~k-~~~~--------------g~~iRGDInILLvG  326 (682)
T COG1241         272 KRPD--IYDIL---I-KSIAPSIYGHEDVKKAILLQ---LF-GGVKK-NLPD--------------GTRIRGDIHILLVG  326 (682)
T ss_pred             cCCc--HHHHH---H-HHhcccccCcHHHHHHHHHH---hc-CCCcc-cCCC--------------CcccccceeEEEcC
Confidence            2111  11110   1 1133333  22233333211   11 11110 0000              001221 1334557


Q ss_pred             hHHHHHHHHHHHHHHhccCCCCCcceeeeeccCCCHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHhhcccccC
Q psy17703        583 DVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLELTAALKKLVILLGP-SVTVTQQKLIMDLKGALVLAD  661 (720)
Q Consensus       583 Dv~~Ai~l~~~~l~~~~~d~~~g~~d~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~i~~~~~~alv~ad  661 (720)
                      |...|.+-+   |+...     ...+.+++++|+++++.    +|++++.+   +... .|.+        .+|++++||
T Consensus       327 DPgtaKSql---Lk~v~-----~~aPr~vytsgkgss~~----GLTAav~r---d~~tge~~L--------eaGALVlAD  383 (682)
T COG1241         327 DPGTAKSQL---LKYVA-----KLAPRGVYTSGKGSSAA----GLTAAVVR---DKVTGEWVL--------EAGALVLAD  383 (682)
T ss_pred             CCchhHHHH---HHHHH-----hhCCceEEEcccccccc----CceeEEEE---ccCCCeEEE--------eCCEEEEec
Confidence            888887743   33332     12334899999999987    46654432   2111 1332        289999999


Q ss_pred             CCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCCCCCC
Q psy17703        662 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNT  720 (720)
Q Consensus       662 ~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~~~~~  720 (720)
                      .|+|||||||||++++|.+|||+||||+|+|+||||+++|||||||||||||++||||.
T Consensus       384 ~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~  442 (682)
T COG1241         384 GGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDP  442 (682)
T ss_pred             CCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCC
Confidence            99999999999999999999999999999999999999999999999999999999984

>KOG0477|consensus

Probab=100.00  E-value=1.8e-43  Score=382.26  Aligned_cols=398  Identities=29%  Similarity=0.412  Sum_probs=270.8

Q ss_pred             chhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCcccccc-cceEEEecCCcccc
Q psy17703        176 IRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLE-HQIQVRPFNAKKTR  254 (720)
Q Consensus       176 ~~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  254 (720)
                      ..+..+++.|+..+..++.|++.||..-...|+..+-+.|.+++.+|+.++.++....+|.+... .++|+|..++|-..
T Consensus       179 ~~~~~ri~~~~~~n~esl~v~y~dla~~~~~la~fl~~ap~e~l~I~dr~a~~~v~~~~p~yeri~~~ihvris~lP~~~  258 (854)
T KOG0477|consen  179 NVYIERIRRMCEENRESLEVNYTDLAESEHVLAYFLPEAPEEMLEIFDRAALEVVLLHYPNYERIHNEIHVRISDLPVCE  258 (854)
T ss_pred             chHHHHHHHHHhhchHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhCCChhhcccceeeeeecCCccc
Confidence            45577799999999999999999999999999999999999999999999999999999887654 58999999999999


Q ss_pred             ccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeecc-CcccCCccCCCCCCCCcceeeccCCccch
Q psy17703        255 NLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDR-GRIHEPTLCTNCSTNHCFSLVHNRSHFTD  333 (720)
Q Consensus       255 ~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~-~~~~~p~~C~~C~~~~~~~~~~~~s~~~d  333 (720)
                      .+|.++..|+|+|+.+.|.|||.|-|.|++....|.|.+||+.....+.. .....|..||+|..+++|.+..+...|.+
T Consensus       259 ~lr~lRq~Hln~Lvr~~GvVtr~tgV~pql~~vky~C~KC~~vlgPF~qs~n~evkp~~C~~cqSkGpf~vn~e~Tvyrn  338 (854)
T KOG0477|consen  259 SLRSLRQLHLNQLVRTSGVVTRRTGVFPQLSVVKYDCLKCGFVLGPFVQSSNSEVKPGSCPECQSKGPFEVNVEETVYRN  338 (854)
T ss_pred             cHHHHHHhccCceEEeeeEEEecceeehhhHHHhhhHHhhCCccCceeeccCceeCCCCCccccCCCCCccchhhhhhcc
Confidence            99999999999999999999999999999999999999999887655543 35577999999999999999999999999


Q ss_pred             hhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCcee
Q psy17703        334 KQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVC  413 (720)
Q Consensus       334 ~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~  413 (720)
                      ||++++||.||.+      ++|            .+||+.-                                    -|+
T Consensus       339 YQritiQEspg~v------~~G------------rlPRsk~------------------------------------vIL  364 (854)
T KOG0477|consen  339 YQRITIQESPGTV------PAG------------RLPRSKE------------------------------------VIL  364 (854)
T ss_pred             cceeeeccCCCcC------CCC------------ccccchh------------------------------------hee
Confidence            9999999999876      222            2344210                                    011


Q ss_pred             eccccccCChHHHHHHHHHHHhceEeeeccCeE-----Eeec--CceEEEec---ccCCCCCCCCCcccccccCCChhhh
Q psy17703        414 CIDEFDKMSDTTRSILHEVMEQQTLSIAKAGII-----CQLN--ARTSILAA---ANPCDSQWNTSKTIIDNIRLPHTLL  483 (720)
Q Consensus       414 ~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~-----~~l~--a~~~iiaa---aNp~~g~~~~~~~~~~~~~l~~aLl  483 (720)
                      +=|=+|...+-+         +-.+    .|+.     ..||  ..|-++|+   +|..-                    
T Consensus       365 l~DLvD~~kpGd---------Eiev----TGIy~nn~d~sLN~kngFpvfatvi~ANhV~--------------------  411 (854)
T KOG0477|consen  365 LADLVDSCKPGD---------EIEV----TGIYTNNFDGSLNTKNGFPVFATVIEANHVV--------------------  411 (854)
T ss_pred             hhhhhhhcCCCc---------ceEE----eeeecccccccccccCCccccceeheehhhh--------------------
Confidence            001111111100         0000    1110     0110  00111111   11110                    


Q ss_pred             ccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHH
Q psy17703        484 SRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESL  563 (720)
Q Consensus       484 sRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~l  563 (720)
                       |=|--+.+....++             ..+.+-.+.|   .|.+.+-...-|.          .   ++..     ...
T Consensus       412 -~k~~~~~~~~ltde-------------d~k~i~~lsk---d~~i~~rIiaSia----------P---sIyG-----h~~  456 (854)
T KOG0477|consen  412 -KKDGKFDVDELTDE-------------DFKEIWELSK---DPPIKERIIASIA----------P---SIYG-----HED  456 (854)
T ss_pred             -hhccccchhHHhHH-------------HHHHHHHHhc---CccHHHHHHHhhC----------c---hhhc-----hHH
Confidence             00000111111111             1122222221   1111111000000          0   0000     122


Q ss_pred             HHHHHHHHHHcCC--------------CCCCHHhHHHHHHHHHHHHHHhc-cCCCCCcceeeeeccCCCHHHHHHHHHHH
Q psy17703        564 IRLSEAHAKMRYS--------------ETVEVQDVDEAWRLHREALKQSA-TDPLSGKIDVSILTTGVSSAARQRQLELT  628 (720)
Q Consensus       564 irla~A~A~l~~~--------------~~V~~~Dv~~Ai~l~~~~l~~~~-~d~~~g~~d~~~~~~g~~~~~~~~~~~~~  628 (720)
                      ++.|-|+|-..+.              +.+.-+|...|.+-   .||.+. +.|+      .+++||.++|++    +|+
T Consensus       457 VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQ---FLKY~eK~s~R------AV~tTGqGASav----GLT  523 (854)
T KOG0477|consen  457 VKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQ---FLKYAEKTSPR------AVFTTGQGASAV----GLT  523 (854)
T ss_pred             HHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHH---HHHHHHhcCcc------eeEeccCCcccc----cee
Confidence            3444455444332              22234677778773   344443 3333      789999999987    355


Q ss_pred             HHHHHHHHHhC--CCcchhHHHHHHHHhhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccce
Q psy17703        629 AALKKLVILLG--PSVTVTQQKLIMDLKGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTS  706 (720)
Q Consensus       629 ~~i~~~~~~~~--~~~~~~~~~i~~~~~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~  706 (720)
                      ..+.+    ++  ..|.++        +|++++||+|+|||||||||.+++|++||||||||.|||+||||+++|+|||+
T Consensus       524 a~v~K----dPvtrEWTLE--------aGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArct  591 (854)
T KOG0477|consen  524 AYVRK----DPVTREWTLE--------AGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCT  591 (854)
T ss_pred             EEEee----CCccceeeec--------cCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhh
Confidence            54432    22  223332        89999999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCCCCCC
Q psy17703        707 ILAAANPCDSQWNT  720 (720)
Q Consensus       707 ~~~~~~p~~~~~~~  720 (720)
                      |||||||++||||.
T Consensus       592 vIAAanPigGRY~~  605 (854)
T KOG0477|consen  592 VIAAANPIGGRYNP  605 (854)
T ss_pred             hheecCCCCCccCC
Confidence            99999999999984

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=100.00  E-value=1e-39  Score=377.57  Aligned_cols=172  Identities=27%  Similarity=0.476  Sum_probs=152.6

Q ss_pred             chhhHHHHHHHhcC----------CcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHh----hCccccccc
Q psy17703        176 IRTDRRIRQIFSLE----------DPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFE----RHPAAVLEH  241 (720)
Q Consensus       176 ~~~~~~~r~~~~~~----------~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~----~~~~~~~~~  241 (720)
                      ..|..+++.|...+          ..+|.||+.||..||++||++|+++|.++|+.|++|+++++.+    .+++..+..
T Consensus       121 ~~y~~~~~~~~~~~~~~~~~~~~~~~sl~Vd~~~l~~fd~~L~~~l~~~P~e~i~~~e~~l~~~~~~~~~~~~~~~~~~~  200 (915)
T PTZ00111        121 LYYLWKLMNFIKENLRDHSTGYSRILPFEVDLMHVYSFDKVLYKLLVTFPADCIAELDKVLVKLFNELLSKHYSDLSLEN  200 (915)
T ss_pred             HHHHHHHHHHHHHhhhcccccccCCceEEEEHHHHHhhhHHHHHHHHHCHHHHHHHHHHHHHHHHHHHhhcccccchhcc
Confidence            45677788887654          4799999999999999999999999999999999999887543    333333332


Q ss_pred             ---ceEEEecCCccccccccCCCcCCCceEEEeeEEEEecccchhhhhheeeccc-----------CCceeeeeeccCcc
Q psy17703        242 ---QIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIV-----------CNYSTTVEIDRGRI  307 (720)
Q Consensus       242 ---~~~~~~~~~~~~~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~-----------Cg~~~~~~~~~~~~  307 (720)
                         .++||++|++....+|+|+++++||||+|+|||+|+|+|+|+++.++|+|..           |+++....+.+|.+
T Consensus       201 ~~~~~~vr~~n~~~~~~iR~L~s~~i~kLV~v~GiV~r~S~v~P~l~~a~f~C~~~~~~~~~~~~~C~~~~~~~~~~g~~  280 (915)
T PTZ00111        201 NSFFPRARLMNKPVSDCVGNLEPSMADSLVQFSGTVVRQTWIVPEITMACFRCRGQKKIGLNDYQPCTCEHYEYVIQGEV  280 (915)
T ss_pred             ccceEEEEEeCCCCCCCcccCCHhhCCCeEEEEEEEEEccCcchhhEEEEEECCCCCcccCCccccCCccccccccCCcc
Confidence               4799999999999999999999999999999999999999999999999985           88887777788899


Q ss_pred             cCCccCCCCCCCCcceeeccCCccchhhhhhhhcCCCCcc
Q psy17703        308 HEPTLCTNCSTNHCFSLVHNRSHFTDKQLVRLQETPAEIN  347 (720)
Q Consensus       308 ~~p~~C~~C~~~~~~~~~~~~s~~~d~Q~iklQE~pg~i~  347 (720)
                      .+|..||+|++.++|.+.+++|.|+|||++++||+|++++
T Consensus       281 ~~P~~C~~C~~~~~f~l~~~~s~f~D~Q~IklQE~pe~vp  320 (915)
T PTZ00111        281 NEPLLCNECNSKYTFELNHNMCVYSTKKIVKLLQSNSSLN  320 (915)
T ss_pred             cCCCCCCCCCCCCCeEEccCccEEEeeeEEEEeeCcccCC
Confidence            9999999999999999999999999999999999998774

>KOG0478|consensus

Probab=100.00  E-value=7.4e-39  Score=351.16  Aligned_cols=175  Identities=46%  Similarity=0.687  Sum_probs=154.1

Q ss_pred             CCCCCCceEEEEEEcccccccccCCCeEEEEEEEEeccCCCCccccccccceeEEEEEEEEEEeccccccccc--ccCCC
Q psy17703          1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQD--EKEHK   78 (720)
Q Consensus         1 VP~G~~Prsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~   78 (720)
                      +|.|+||++|+|++++||||+|+|||||+||||||+.|.+.|++++.++++|++|++++|+++.+..+++..+  ..+..
T Consensus       322 ~p~g~tPhtv~v~~~~dLVD~v~pGDrv~VTGi~ra~p~r~np~~r~vkSvyktyldvvh~rk~s~~rl~~~d~~d~~~~  401 (804)
T KOG0478|consen  322 MPEGSTPHTVSVVLHNDLVDKVRPGDRVEVTGILRATPVRVNPRMRMVKSVYKTYLDVVHIRKASMKRLEGSDERDVDEV  401 (804)
T ss_pred             CcCCCCCceEEEEEehhhhhccCCCCeEEEEEEEEeEEeccCcchhhHHHHHHHHhHhhhhhhhhhhhcccccccccccc
Confidence            6999999999999999999999999999999999999999999999999999999999999998877766332  33567


Q ss_pred             CChHHHHHHHhhhcCCcHHHHHHHhhchhccCchhhHHHHHHHhhCCcccccccccccCCcccccCCCcccCCCCCcccc
Q psy17703         79 FPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSSIGSL  158 (720)
Q Consensus        79 ~~~~~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk~lll~L~GG~~k~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~  158 (720)
                      ++.+++++|.+++++||+|++|++|||||||||||||||||||||||+.|.+..++++|+ +|+   .|+|||||+.|+ 
T Consensus       402 ~~~~~~e~i~elskrpdiy~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~-~IN---ILL~GDPGtsKS-  476 (804)
T KOG0478|consen  402 RRIEDLEKIQELSKRPDIYELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRG-DIN---ILLVGDPGTSKS-  476 (804)
T ss_pred             ccHHHHHHHHHHhcCccHHHHHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccc-cce---EEEecCCCcCHH-
Confidence            899999999999999999999999999999999999999999999999999988776664 444   899999999764 


Q ss_pred             ccCCCCCcCCccccCCCchhhHHHHHHHhcCCcEE
Q psy17703        159 RTPRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVL  193 (720)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l  193 (720)
                                   +-..|-+....|.+|++|+.+=
T Consensus       477 -------------qlLqyv~~l~pRg~yTSGkGsS  498 (804)
T KOG0478|consen  477 -------------QLLQYCHRLLPRGVYTSGKGSS  498 (804)
T ss_pred             -------------HHHHHHHHhCCcceeecCCccc
Confidence                         4555666677777777776643

>KOG0479|consensus

Probab=100.00  E-value=1.7e-35  Score=318.53  Aligned_cols=404  Identities=28%  Similarity=0.365  Sum_probs=251.3

Q ss_pred             hhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCcccccc-cceEEEecC--Cccc
Q psy17703        177 RTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLE-HQIQVRPFN--AKKT  253 (720)
Q Consensus       177 ~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~--~~~~  253 (720)
                      -|.+++..|...++..|.||.+||..|+++++.-|+.+|.+.++.|++|+.++.....+.+... ..++|-|..  -.+.
T Consensus        29 iy~e~i~~~~~~~~~RlIvNv~dlr~~~~~~A~glL~~p~~~~~~f~~AL~~~~~~~d~~~~~~~~~~~vGfeGsFG~~h  108 (818)
T KOG0479|consen   29 IYQEAIKKLLNEGQHRLIVNVDDLREFNRERASGLLENPAEEVPPFEDALTDAASRIDDVYAKVKELFFVGFEGSFGNRH  108 (818)
T ss_pred             HHHHHHHHhhhcCcceEEEEhHHHHHhHHHHHHhHhhChHhhhhhHHHHHHHHHhcccchhhhhccceEEEeeeeccccc
Confidence            3456788899999999999999999999999999999999999999999999876544444333 244554432  2345


Q ss_pred             cccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccC----cccCCccCC-CCCCCCcceeeccC
Q psy17703        254 RNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRG----RIHEPTLCT-NCSTNHCFSLVHNR  328 (720)
Q Consensus       254 ~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~----~~~~p~~C~-~C~~~~~~~~~~~~  328 (720)
                      .+-|.|.+.++|++|+++|||+++|-|+|++.+.+.-|+.-+...+.....-    .+..+..-| .-...+++.....-
T Consensus       109 v~PRtL~s~~lg~mVcvEGIVTkcSlvRPKvvkSVHYcpaT~~~~~r~Y~D~T~~~~~p~~svYPT~De~gN~L~TEyGl  188 (818)
T KOG0479|consen  109 VNPRTLTSVYLGKMVCVEGIVTKCSLVRPKVVKSVHYCPATNKFHERDYRDATMLTTLPTGSVYPTRDEDGNLLETEYGL  188 (818)
T ss_pred             cChhhHHHHHhCceEEeeeeeeeeeeechhhhheeeeccccCcchhhhhcchheecccccCCcCCccCCCCCeeeEeecc
Confidence            6789999999999999999999999999999999999999887765543221    112222222 23334678888899


Q ss_pred             CccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeec
Q psy17703        329 SHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLA  408 (720)
Q Consensus       329 s~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~la  408 (720)
                      |.|.|+|.+.+||.|..-      |||-            +||++-.                                 
T Consensus       189 S~ykDHQtitiQEmPE~A------PaGQ------------LPRSVDv---------------------------------  217 (818)
T KOG0479|consen  189 SVYKDHQTITIQEMPEKA------PAGQ------------LPRSVDV---------------------------------  217 (818)
T ss_pred             eeeecccEEEeeeccccC------CCCC------------CCcceeE---------------------------------
Confidence            999999999999999742      5542            5664321                                 


Q ss_pred             CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeec--------CceEEEecccCCCCCCCCCcccccccCCCh
Q psy17703        409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLN--------ARTSILAAANPCDSQWNTSKTIIDNIRLPH  480 (720)
Q Consensus       409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~--------a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~  480 (720)
                         |+=.|=.|+..|.++           +.|  -|+...||        ..|.-+--+|...--   .+       =+.
T Consensus       218 ---ilddDLVD~~KPGDR-----------V~i--vG~yr~Lp~k~~g~tsg~FRTvliaNni~~l---~k-------e~~  271 (818)
T KOG0479|consen  218 ---ILDDDLVDRVKPGDR-----------VNI--VGIYRSLPGKSNGNTSGTFRTVLIANNIELL---SK-------EAA  271 (818)
T ss_pred             ---EecccccccCCCCCe-----------eEE--EEEEeeccCccCCcccceeEEEEEeccHHhh---cc-------ccc
Confidence               000111233333221           111  12222221        112211112211100   00       001


Q ss_pred             hhhccceeEEEecCCChHHHHHHHHhhcch-hHHHHHHHHHHhhcCCcc--hHHHHHHHHHHHH-----HhhhcCCCCCC
Q psy17703        481 TLLSRFDLIFLLLDPQSEQFDARLARHLDI-TVLRDYIAYAQEHLSPTL--SEEASQRLIQTYV-----DMRKLGAGRGR  552 (720)
Q Consensus       481 aLlsRFdli~~l~d~~~~~~d~~la~~i~~-~~l~~~i~~ar~~~~p~l--s~ea~~~l~~~y~-----~lr~~~~~~~~  552 (720)
                      +.+.++|+          ..-++|++.-+. ++|      ++ .+.|.+  .+...++|.-...     .|+.+..-+++
T Consensus       272 ~~~t~~Di----------~~i~klsk~kdiFdlL------a~-SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRGD  334 (818)
T KOG0479|consen  272 PDFTDEDI----------RNIKKLSKKKDIFDLL------AR-SLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGD  334 (818)
T ss_pred             ccCChhhH----------HHHHHHHhcCCHHHHH------hh-ccCcccccHHHHHHHHHHHHhccceeccCCCceeccc
Confidence            11112220          111223321111 111      11 234444  1222233321111     01111111222


Q ss_pred             cccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHH-HHHHHHHHhccCCCCCcceeeeeccCCCHHHHHHHHHHHHHH
Q psy17703        553 ISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWR-LHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLELTAAL  631 (720)
Q Consensus       553 ~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~-l~~~~l~~~~~d~~~g~~d~~~~~~g~~~~~~~~~~~~~~~i  631 (720)
                      +                       +....+|...|.+ |+++-|.   +.|      ..+-+||.++|.+    +|++++
T Consensus       335 I-----------------------NiLlvGDPSvAKSQLLRyVLn---tAp------lAI~TTGRGSSGV----GLTAAV  378 (818)
T KOG0479|consen  335 I-----------------------NILLVGDPSVAKSQLLRYVLN---TAP------LAIATTGRGSSGV----GLTAAV  378 (818)
T ss_pred             e-----------------------eEEEecCchHHHHHHHHHHHh---ccc------ccccccCCCCCCc----cceeEE
Confidence            2                       2334577777876 2333222   233      3667899998887    466655


Q ss_pred             HHHHHHhCCCcchhHHHHHHHHhhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeec
Q psy17703        632 KKLVILLGPSVTVTQQKLIMDLKGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAA  711 (720)
Q Consensus       632 ~~~~~~~~~~~~~~~~~i~~~~~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~  711 (720)
                      ..   +...|  -.     ....|+++++|.|+.||||||||++-+|.+|||+||||++.|+||||+++|||||||||||
T Consensus       379 Tt---D~eTG--ER-----RLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAA  448 (818)
T KOG0479|consen  379 TT---DQETG--ER-----RLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAA  448 (818)
T ss_pred             ee---ccccc--hh-----hhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeec
Confidence            42   11111  11     1238999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCC
Q psy17703        712 NPCDSQWNT  720 (720)
Q Consensus       712 ~p~~~~~~~  720 (720)
                      ||+|||||.
T Consensus       449 NPvyG~Yd~  457 (818)
T KOG0479|consen  449 NPVYGQYDQ  457 (818)
T ss_pred             CccccccCC
Confidence            999999984

>KOG0480|consensus

Probab=99.95  E-value=1.4e-28  Score=268.76  Aligned_cols=174  Identities=28%  Similarity=0.429  Sum_probs=136.6

Q ss_pred             CCCCCCceEEEEEEcccccccccCCCeEEEEEEEEeccCC---CCcccccc-----c-cceeEEEEEEEEEEecccccc-
Q psy17703          1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQ---VNPRMRSV-----K-SVYKTHIDVVHFRKIDATRLY-   70 (720)
Q Consensus         1 VP~G~~Prsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~---~~~~~~~~-----~-~~~~~~i~~~~~~~~~~~~~~-   70 (720)
                      .|.|+|||+++|++.+|||++|+|||+|++|||+.+.|.-   +.+..+..     . ..+-+++.+++++..+....+ 
T Consensus       217 ~p~GsiPRtvdviLr~dlVe~~~pGD~v~~TGiliVvpdv~~l~~pgsk~~n~r~~~~~~~i~~lkal~Vrdl~yq~aFl  296 (764)
T KOG0480|consen  217 IPRGSIPRTVDVILRGDLVETAQPGDKVDITGILIVVPDVSQLGGPGSKAENNRGGETGDGITGLKALGVRDLTYQLAFL  296 (764)
T ss_pred             CCCCCCCceeEEEEhhhhHhhcCCCCEEEEEEEEEEecChHHhcCCccccccccCCCcccceeeehhcccccchhhhhHh
Confidence            5999999999999999999999999999999999998841   11222211     1 156788888888765432100 


Q ss_pred             --------cccc-----cCCCCChHHHHHHHhhhcCCcHHHHHHHhhchhccCchhhHHHHHHHhhCCcccccccccccC
Q psy17703         71 --------KQDE-----KEHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDR  137 (720)
Q Consensus        71 --------~~~~-----~~~~~~~~~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk~lll~L~GG~~k~~~~~~~~~  137 (720)
                              ..++     --..++.+|...+++++.++|+|.+|+.|+||+|||||.||+||||+||||+.|.-.+++++|
T Consensus       297 ac~~~~~~~~ee~~~~~~~~~~s~~e~~~~~em~~~~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lR  376 (764)
T KOG0480|consen  297 ACHVQSTLAVEEDDEEDMLNSMSSEEFAEIREMSKDENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLR  376 (764)
T ss_pred             hhhcccccccchhhhHHHhhhccHHHHHHHHHHhcCchHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCcccc
Confidence                    0011     113589999999999999999999999999999999999999999999999999998899999


Q ss_pred             CcccccCCCcccCCCCCccccccCCCCCcCCccccCCCchhhHHHHHHHhcCCcE
Q psy17703        138 MSEIDLASPLNYGTPSSIGSLRTPRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPV  192 (720)
Q Consensus       138 ~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  192 (720)
                      +   |++ ++++||||++|+              |...+-..-.+|.+|+.|+.+
T Consensus       377 G---Din-v~iVGDPgt~KS--------------QfLk~v~~fsPR~vYtsGkaS  413 (764)
T KOG0480|consen  377 G---DIN-VCIVGDPGTGKS--------------QFLKAVCAFSPRSVYTSGKAS  413 (764)
T ss_pred             C---Cce-EEEeCCCCccHH--------------HHHHHHhccCCcceEecCccc
Confidence            8   665 899999999774              333344445578888887653

>smart00350 MCM minichromosome maintenance proteins

Probab=99.95  E-value=2.4e-27  Score=269.66  Aligned_cols=93  Identities=39%  Similarity=0.737  Sum_probs=88.9

Q ss_pred             cccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCC--CCCCCcceeeccCCcc
Q psy17703        254 RNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTN--CSTNHCFSLVHNRSHF  331 (720)
Q Consensus       254 ~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~--C~~~~~~~~~~~~s~~  331 (720)
                      .++|+|+++++||||+|+|+|+|+|.|+|++++++|+|..||++.++.+..+.+.+|..||+  |++.++|.++++.|+|
T Consensus         3 ~~~r~l~s~~igklV~v~GiV~r~s~v~p~~~~~~f~C~~C~~~~~~~~~~~~~~~p~~C~~~~C~~~~~f~l~~~~s~~   82 (509)
T smart00350        3 SSIRELRADHLGKLVRVSGIVTRTSGVRPKLKRASFTCEKCGATLGPEIQSGRETEPTVCPPRECQSPTPFSLNHERSTF   82 (509)
T ss_pred             CCcccCCHhHCCCEEEEEEEEEEccCceEEEEEEEEEecCCCCEEeEEecCCcccCCCcCCCCcCCCCCceEeccCCCeE
Confidence            57899999999999999999999999999999999999999999999988889999999998  9998899999999999


Q ss_pred             chhhhhhhhcCCCCc
Q psy17703        332 TDKQLVRLQETPAEI  346 (720)
Q Consensus       332 ~d~Q~iklQE~pg~i  346 (720)
                      .|||++++||.|+++
T Consensus        83 ~D~Q~I~iQE~~e~~   97 (509)
T smart00350       83 IDFQKIKLQESPEEV   97 (509)
T ss_pred             EEEEEEEEEcCcccC
Confidence            999999999998765

>TIGR00368 Mg chelatase-related protein

Probab=99.92  E-value=2.5e-24  Score=241.99  Aligned_cols=236  Identities=22%  Similarity=0.260  Sum_probs=171.0

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccc----cCCccccccccce---ee------------cC-ccccceeeecc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYT----SGKGSSAVGLTAY---IT------------KD-PETRQMVLQTG  403 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~----~g~~ss~~glta~---~~------------~~-~~~~~~~~~~G  403 (720)
                      ++.|++|+||||+|||++++.++.++|+....    .....+..|....   ..            .. ...|.+..+||
T Consensus       210 ~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG  289 (499)
T TIGR00368       210 GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPG  289 (499)
T ss_pred             CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccccchh
Confidence            67899999999999999999999988764221    1111111121110   00            00 01233457899


Q ss_pred             eeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcc----------cc
Q psy17703        404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKT----------II  473 (720)
Q Consensus       404 ~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~----------~~  473 (720)
                      .+.+|++|++||||+++++++.++.|+++||++.+++.+.|....+|++|.+|||+||++++|.....          ..
T Consensus       290 ~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~  369 (499)
T TIGR00368       290 EISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISR  369 (499)
T ss_pred             hhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999766543211          12


Q ss_pred             cccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhc------------CCc-----------chH
Q psy17703        474 DNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHL------------SPT-----------LSE  530 (720)
Q Consensus       474 ~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~------------~p~-----------ls~  530 (720)
                      +..+++.+|+||||+++.+.+.+..+... -....+...+++.+..||+..            +..           +++
T Consensus       370 y~~~is~pllDR~dl~~~~~~~~~~~l~~-~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~  448 (499)
T TIGR00368       370 YWNKLSGPFLDRIDLSVEVPLLPPEKLLS-TGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSA  448 (499)
T ss_pred             HhhhccHhHHhhCCEEEEEcCCCHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCH
Confidence            23479999999999999999887654422 112235566777777665432            111           233


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703        531 EASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL  590 (720)
Q Consensus       531 ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l  590 (720)
                      ++.+.+...|..          ...|.|....++|+|+++|+|++++.|+.+|+.+|+++
T Consensus       449 ~~~~~l~~a~~~----------~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~~  498 (499)
T TIGR00368       449 IDANDLEGALNK----------LGLSSRATHRILKVARTIADLKEEKNISREHLAEAIEY  498 (499)
T ss_pred             HHHHHHHHHHHh----------cCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhc
Confidence            333333333321          23567999999999999999999999999999999864

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2.5e-25  Score=239.90  Aligned_cols=260  Identities=23%  Similarity=0.285  Sum_probs=188.4

Q ss_pred             cchhhhhhhhcCC---------CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecC--------c
Q psy17703        331 FTDKQLVRLQETP---------AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKD--------P  393 (720)
Q Consensus       331 ~~d~Q~iklQE~p---------g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~--------~  393 (720)
                      ..|+..|+-||..         |.+|+|++||||||||++++.+..++|+.......+.+.+...+....+        +
T Consensus       175 ~~D~~DV~GQ~~AKrAleiAAAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rP  254 (490)
T COG0606         175 APDFKDVKGQEQAKRALEIAAAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRP  254 (490)
T ss_pred             CcchhhhcCcHHHHHHHHHHHhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCC
Confidence            5688888888865         8999999999999999999999999998754333333222222111000        0


Q ss_pred             -------------cccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEeccc
Q psy17703        394 -------------ETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAAN  460 (720)
Q Consensus       394 -------------~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaN  460 (720)
                                   ..|....+||.+.+||+||+|+||+....++..++|++-||.+.+.|++++...++|++|+++||||
T Consensus       255 Fr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmN  334 (490)
T COG0606         255 FRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMN  334 (490)
T ss_pred             ccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcC
Confidence                         1122457899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccc----------cccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcC---Cc
Q psy17703        461 PCDSQWNTSKTII----------DNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLS---PT  527 (720)
Q Consensus       461 p~~g~~~~~~~~~----------~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~---p~  527 (720)
                      |+.+++.....-.          +.-+|+.+|++|||+.+.+..++-.+.-...-.......+++.+++||....   -.
T Consensus       335 pcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~  414 (490)
T COG0606         335 PCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQVPTGESSAGVRERVAKAREAQIARAGR  414 (490)
T ss_pred             CCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhc
Confidence            9999987754432          2237999999999999999877533322111112235567777777764210   11


Q ss_pred             --chHHHHHHHHHHHHHhhhcCCC-----CCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703        528 --LSEEASQRLIQTYVDMRKLGAG-----RGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL  590 (720)
Q Consensus       528 --ls~ea~~~l~~~y~~lr~~~~~-----~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l  590 (720)
                        .+.+......+.|+.+-..+..     -..+.+|.|.+..++|+|+.+|++.+.+.+...|+.+|++.
T Consensus       415 ~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTiADL~g~~~i~~~hl~eAi~y  484 (490)
T COG0606         415 IGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTIADLEGSEQIERSHLAEAISY  484 (490)
T ss_pred             cCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhhhcccCcchhhHHHHHHHHhh
Confidence              1223333333334433222110     12345677999999999999999999999999999999875

>PRK09862 putative ATP-dependent protease; Provisional

Probab=99.92  E-value=3e-24  Score=240.12  Aligned_cols=238  Identities=23%  Similarity=0.312  Sum_probs=167.1

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcc----ccccccc---eeecCc-------------cccceeeecc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGS----SAVGLTA---YITKDP-------------ETRQMVLQTG  403 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~s----s~~glta---~~~~~~-------------~~~~~~~~~G  403 (720)
                      ++.|++|+|+||+|||+|++.++.++|+.......+.    +.+|...   ...+.+             ..|.+..+||
T Consensus       209 ~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG  288 (506)
T PRK09862        209 GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPG  288 (506)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhh
Confidence            6689999999999999999999999876422111111    1111100   000001             1234568899


Q ss_pred             eeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcc---c-----ccc
Q psy17703        404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKT---I-----IDN  475 (720)
Q Consensus       404 ~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~---~-----~~~  475 (720)
                      .+.+||+|++|+||++.+++..++.|+++||++.+++.+.|...++|++|.+|||+||++++|.+...   .     .+.
T Consensus       289 ~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~  368 (506)
T PRK09862        289 EISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYL  368 (506)
T ss_pred             HhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999766543211   1     112


Q ss_pred             cCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhh-------cCC-----------cchHHHHHHHH
Q psy17703        476 IRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEH-------LSP-----------TLSEEASQRLI  537 (720)
Q Consensus       476 ~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~-------~~p-----------~ls~ea~~~l~  537 (720)
                      -+|+.+++||||+.+.+.+++.++.........+...+++.+..|++.       ++.           .+++++...+.
T Consensus       369 ~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~  448 (506)
T PRK09862        369 NRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLE  448 (506)
T ss_pred             hhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHH
Confidence            379999999999999999876543321111122333444444433321       111           12333333333


Q ss_pred             HHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703        538 QTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLH  591 (720)
Q Consensus       538 ~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~  591 (720)
                      .++.          ...+|+|....++|+|+++|.|++++.|+.+|+.+|+.+.
T Consensus       449 ~~~~----------~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~yR  492 (506)
T PRK09862        449 ETLI----------HLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSYR  492 (506)
T ss_pred             HHHH----------HcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhh
Confidence            3322          2335689999999999999999999999999999998864

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=99.90  E-value=5.1e-23  Score=237.08  Aligned_cols=227  Identities=24%  Similarity=0.284  Sum_probs=180.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCc-cccCC-cccccccccee--ecCccccceeeecceeeecCCceeeccccccC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQ-YTSGK-GSSAVGLTAYI--TKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~-~~~g~-~ss~~glta~~--~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      -||||.|+||||||++++++++.+|+.. |.... +.+.-.+.+..  ......+.+.+++|.+..|++|++||||++++
T Consensus        17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl   96 (589)
T TIGR02031        17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL   96 (589)
T ss_pred             ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence            4999999999999999999999998641 22111 11111222221  11123466788999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHH
Q psy17703        422 SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFD  501 (720)
Q Consensus       422 ~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d  501 (720)
                      ++..|+.|+++|+++.+++.+.|....+|++|.+|||+||..+.          -.|+++|++||++.+.+.+++....+
T Consensus        97 ~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~----------g~L~~~LldRf~l~v~~~~~~~~~er  166 (589)
T TIGR02031        97 DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGG----------GGLPDHLLDRLALHVSLEDVASQDLR  166 (589)
T ss_pred             CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcccc----------CCCCHHHHHhccCeeecCCCCCHHHH
Confidence            99999999999999999999999999999999999999998521          15999999999999988877665543


Q ss_pred             HHHHhh----------cchhHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703        502 ARLARH----------LDITVLRDYIAYAQEHLSP-TLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH  570 (720)
Q Consensus       502 ~~la~~----------i~~~~l~~~i~~ar~~~~p-~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~  570 (720)
                      ..+.++          .....++++|..|++.+.. .+++++.+.|.+.+..+...         ++|....++|+|+|+
T Consensus       167 ~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~---------s~Ra~i~~~r~ArA~  237 (589)
T TIGR02031       167 VEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGIS---------GHRADLFAVRAAKAH  237 (589)
T ss_pred             HHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCC---------CccHHHHHHHHHHHH
Confidence            333332          2456788899999986543 57899999999888765532         259999999999999


Q ss_pred             HHHcCCCCCCHHhHHHHHHHH
Q psy17703        571 AKMRYSETVEVQDVDEAWRLH  591 (720)
Q Consensus       571 A~l~~~~~V~~~Dv~~Ai~l~  591 (720)
                      |.+++++.|+++|+.+|..+.
T Consensus       238 Aal~gr~~V~~~Dv~~a~~lv  258 (589)
T TIGR02031       238 AALHGRTEVTEEDLKLAVELV  258 (589)
T ss_pred             HHHhCCCCCCHHHHHHHHHHH
Confidence            999999999999999999974

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=99.90  E-value=2.6e-22  Score=214.86  Aligned_cols=227  Identities=21%  Similarity=0.240  Sum_probs=174.8

Q ss_pred             CCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcc---------------------------------cccccccee
Q psy17703        343 PAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGS---------------------------------SAVGLTAYI  389 (720)
Q Consensus       343 pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~s---------------------------------s~~glta~~  389 (720)
                      ++..|+||.|+||||||++++.+++++|+.....+...                                 +.-.+.++.
T Consensus        27 ~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~  106 (334)
T PRK13407         27 PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGAL  106 (334)
T ss_pred             cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecch
Confidence            45579999999999999999999999986332222100                                 000011110


Q ss_pred             ecC--ccccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCC
Q psy17703        390 TKD--PETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWN  467 (720)
Q Consensus       390 ~~~--~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~  467 (720)
                      .-+  -.+|.+.+++|.+..+++|++|+||++.++++.|+.|+++|+++.+++.+.|....++++|.++|++||..+   
T Consensus       107 d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~---  183 (334)
T PRK13407        107 DIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEG---  183 (334)
T ss_pred             hhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccC---
Confidence            000  114678899999999999999999999999999999999999999999999999999999999999999754   


Q ss_pred             CCcccccccCCChhhhccceeEEEecCCCh-HHHHHHHHhhcc---------------hhHHHHHHHHHHhhcC-CcchH
Q psy17703        468 TSKTIIDNIRLPHTLLSRFDLIFLLLDPQS-EQFDARLARHLD---------------ITVLRDYIAYAQEHLS-PTLSE  530 (720)
Q Consensus       468 ~~~~~~~~~~l~~aLlsRFdli~~l~d~~~-~~~d~~la~~i~---------------~~~l~~~i~~ar~~~~-p~ls~  530 (720)
                               .++++|++||.+.+.+.++.+ ++..+.+.+...               .....+.|..+++.+. -.+++
T Consensus       184 ---------~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~  254 (334)
T PRK13407        184 ---------ELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPN  254 (334)
T ss_pred             ---------CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCH
Confidence                     389999999999999988776 444444443221               1123466777777654 35788


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703        531 EASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL  590 (720)
Q Consensus       531 ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l  590 (720)
                      +..+++.+.....|..         ++|.-..+++.|+|+|.+++++.|+.+|+..+..+
T Consensus       255 ~~~~yi~~l~~~~~~~---------s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~  305 (334)
T PRK13407        255 TVLHDCAALCIALGSD---------GLRGELTLLRAARALAAFEGAEAVGRSHLRSVATM  305 (334)
T ss_pred             HHHHHHHHHHHHHCCC---------CchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHH
Confidence            8888888887777653         35988999999999999999999999999888654

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=99.89  E-value=3.5e-22  Score=232.73  Aligned_cols=227  Identities=22%  Similarity=0.277  Sum_probs=176.0

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCC-----------------------------------ccccccccce
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGK-----------------------------------GSSAVGLTAY  388 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~-----------------------------------~ss~~glta~  388 (720)
                      ...+|||.|+||||||++++++++++|......|.                                   +.+...+.+.
T Consensus        24 ~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~  103 (633)
T TIGR02442        24 RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGS  103 (633)
T ss_pred             CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCc
Confidence            34579999999999999999999999732111000                                   0000001111


Q ss_pred             e--ecCccccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCC
Q psy17703        389 I--TKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQW  466 (720)
Q Consensus       389 ~--~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~  466 (720)
                      .  ...-..+.+.+++|.+..|++|++||||+++|+++.|+.|+++|+++.+.+.+.|....+++++.+|||+||..|  
T Consensus       104 ~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg--  181 (633)
T TIGR02442       104 LDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEG--  181 (633)
T ss_pred             ccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCC--
Confidence            0  000123456788999999999999999999999999999999999999999999999999999999999999764  


Q ss_pred             CCCcccccccCCChhhhccceeEEEecCCChHHHHHHHHhhc----------------chhHHHHHHHHHHhhcC-Ccch
Q psy17703        467 NTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL----------------DITVLRDYIAYAQEHLS-PTLS  529 (720)
Q Consensus       467 ~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i----------------~~~~l~~~i~~ar~~~~-p~ls  529 (720)
                                .|+++|++||++.+.+.++.+.+.+..+..+.                ....++++|..++.... ..++
T Consensus       182 ----------~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is  251 (633)
T TIGR02442       182 ----------DLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRIS  251 (633)
T ss_pred             ----------CCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCC
Confidence                      38999999999999998876554433333321                12256688888887543 3679


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703        530 EEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLH  591 (720)
Q Consensus       530 ~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~  591 (720)
                      +++.+.+.+.+..++..         +.|....++|+|+|+|.|++++.|+.+|+.+|+.+.
T Consensus       252 ~~~~~~l~~~~~~~~i~---------s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lv  304 (633)
T TIGR02442       252 DSLIRFISELCIEFGVD---------GHRADIVMARAARALAALDGRRRVTAEDVREAAELV  304 (633)
T ss_pred             HHHHHHHHHHHHHhCCC---------CccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence            99999999998877532         249999999999999999999999999999999874

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=99.89  E-value=9.1e-22  Score=211.20  Aligned_cols=227  Identities=23%  Similarity=0.271  Sum_probs=174.9

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCc------cccC-----------C---c---c--------ccccccceeecC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ------YTSG-----------K---G---S--------SAVGLTAYITKD  392 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~------~~~g-----------~---~---s--------s~~glta~~~~~  392 (720)
                      +.-|+||.|+||+|||++++.++++.|...      +.+.           .   .   .        ....+..+...+
T Consensus        24 ~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d  103 (337)
T TIGR02030        24 KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATED  103 (337)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCCCCCCCccc
Confidence            456899999999999999999999886421      1000           0   0   0        001111111111


Q ss_pred             -----------ccccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccC
Q psy17703        393 -----------PETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP  461 (720)
Q Consensus       393 -----------~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp  461 (720)
                                 -.+|.+.+++|.+..|++|++|+||++.+++..|..|+++|+++.+++.+.|....+++++.++|++||
T Consensus       104 ~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np  183 (337)
T TIGR02030       104 RVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNP  183 (337)
T ss_pred             ceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEecccc
Confidence                       125778899999999999999999999999999999999999998888899999999999999999999


Q ss_pred             CCCCCCCCcccccccCCChhhhccceeEEEecCCCh-HHHHHHHHhhc---------------chhHHHHHHHHHHhhcC
Q psy17703        462 CDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQS-EQFDARLARHL---------------DITVLRDYIAYAQEHLS  525 (720)
Q Consensus       462 ~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~-~~~d~~la~~i---------------~~~~l~~~i~~ar~~~~  525 (720)
                      ..+.            |+++|++||.+.+.+.++.+ ++..+.+....               ....+.+.|..+++.+.
T Consensus       184 ~eg~------------l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~  251 (337)
T TIGR02030       184 EEGE------------LRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLP  251 (337)
T ss_pred             ccCC------------CCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhc
Confidence            8543            99999999999999998876 33333343321               11244677788887654


Q ss_pred             C-cchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703        526 P-TLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLH  591 (720)
Q Consensus       526 p-~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~  591 (720)
                      . .+++++.+++.+....+|..         ++|....++|.|+|+|.+++|+.|+++|+..|..+.
T Consensus       252 ~V~v~d~~~~~i~~l~~~~~~~---------s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~v  309 (337)
T TIGR02030       252 QVTIPYDVLVKVAELCAELDVD---------GLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLA  309 (337)
T ss_pred             cCcCCHHHHHHHHHHHHHHCCC---------CCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            3 57889999999888776632         459999999999999999999999999999998864

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=99.88  E-value=3.2e-23  Score=204.82  Aligned_cols=153  Identities=24%  Similarity=0.313  Sum_probs=85.5

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccce------eecCc--------------cccceeeecc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAY------ITKDP--------------ETRQMVLQTG  403 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~------~~~~~--------------~~~~~~~~~G  403 (720)
                      |..|+||+||||||||++++.+..++|........+.+.....+.      .....              ..+....+||
T Consensus        21 G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PG  100 (206)
T PF01078_consen   21 GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPG  100 (206)
T ss_dssp             CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcC
Confidence            778999999999999999999999999875544333222221111      11110              0123467899


Q ss_pred             eeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcc----------cc
Q psy17703        404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKT----------II  473 (720)
Q Consensus       404 ~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~----------~~  473 (720)
                      .+.+||+||+|+||+..+++...++|++.||++.+++.++|...++|++|.+|||+||++|+|.....          ..
T Consensus       101 eislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~  180 (206)
T PF01078_consen  101 EISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRR  180 (206)
T ss_dssp             CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S----------------------
T ss_pred             HHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEecccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999765321          12


Q ss_pred             cccCCChhhhccceeEEEecCCC
Q psy17703        474 DNIRLPHTLLSRFDLIFLLLDPQ  496 (720)
Q Consensus       474 ~~~~l~~aLlsRFdli~~l~d~~  496 (720)
                      +.-+++.+|++|||+.+.+....
T Consensus       181 Y~~rlsgpllDRiDi~v~~~~~~  203 (206)
T PF01078_consen  181 YQSRLSGPLLDRIDIHVEVPRVS  203 (206)
T ss_dssp             -----------------------
T ss_pred             ccccccccccccccccccccccc
Confidence            33489999999999988887554

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=99.88  E-value=2.7e-21  Score=207.36  Aligned_cols=225  Identities=21%  Similarity=0.236  Sum_probs=172.2

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCC-----------------c--------------cccccccceeecCc-
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGK-----------------G--------------SSAVGLTAYITKDP-  393 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~-----------------~--------------ss~~glta~~~~~~-  393 (720)
                      -++||.|++|||||++++.+++++|+.....+.                 +              ...+.+..+...+. 
T Consensus        39 ~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l  118 (350)
T CHL00081         39 GGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRV  118 (350)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhc
Confidence            379999999999999999999988753211110                 0              00000001111111 


Q ss_pred             ----------cccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCC
Q psy17703        394 ----------ETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD  463 (720)
Q Consensus       394 ----------~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~  463 (720)
                                ..+.+.+++|.+..|++|++|+||++.+++..|..|+++|+++.+++.+.|....+++++.++|++||..
T Consensus       119 ~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~e  198 (350)
T CHL00081        119 CGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEE  198 (350)
T ss_pred             cCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCccc
Confidence                      1244667899999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CCCCCCcccccccCCChhhhccceeEEEecCCCh-HHHHHHHHhhcc-----h----------hHHHHHHHHHHhhcCC-
Q psy17703        464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQS-EQFDARLARHLD-----I----------TVLRDYIAYAQEHLSP-  526 (720)
Q Consensus       464 g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~-~~~d~~la~~i~-----~----------~~l~~~i~~ar~~~~p-  526 (720)
                      +.            |+++|++||.+.+.+.++.+ +...+.+.+...     .          .....-|..|++.+.. 
T Consensus       199 g~------------l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V  266 (350)
T CHL00081        199 GE------------LRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKV  266 (350)
T ss_pred             CC------------CCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCC
Confidence            43            89999999999999998876 333334433211     1          1235667777776543 


Q ss_pred             cchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703        527 TLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLH  591 (720)
Q Consensus       527 ~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~  591 (720)
                      .++++..+++.+.....|..         ++|....++|.|+|+|.+++|+.|+++|+..+..+.
T Consensus       267 ~v~~~~~~yi~~l~~~~~~~---------s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~v  322 (350)
T CHL00081        267 EIDYDLRVKISQICSELDVD---------GLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLC  322 (350)
T ss_pred             ccCHHHHHHHHHHHHHHCCC---------CChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            57888888888887777652         469999999999999999999999999999998864

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=99.85  E-value=3.6e-20  Score=197.83  Aligned_cols=225  Identities=27%  Similarity=0.321  Sum_probs=169.9

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcc-------------------------------ccccccceeecCc-
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGS-------------------------------SAVGLTAYITKDP-  393 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~s-------------------------------s~~glta~~~~~~-  393 (720)
                      -.+|+.|+.|||||+++|+++.++|......|-..                               -.+++....+.|. 
T Consensus        39 ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrv  118 (423)
T COG1239          39 GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRL  118 (423)
T ss_pred             ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhh
Confidence            47999999999999999999999987543322200                               1122222222221 


Q ss_pred             ----------cccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCC
Q psy17703        394 ----------ETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD  463 (720)
Q Consensus       394 ----------~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~  463 (720)
                                ..+...++||.|..||+||+++||++.+++..+++|+.+++++...+.+.|+..++|++|.+||||||..
T Consensus       119 vGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEe  198 (423)
T COG1239         119 VGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEE  198 (423)
T ss_pred             ccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccc
Confidence                      1244678899999999999999999999999999999999998778888999999999999999999997


Q ss_pred             CCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHHHhhc----------------chhHHHHHHHHHHhhcCC-
Q psy17703        464 SQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL----------------DITVLRDYIAYAQEHLSP-  526 (720)
Q Consensus       464 g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i----------------~~~~l~~~i~~ar~~~~p-  526 (720)
                      |.            |.++|++||.+.+.+..+.+.+....+.+..                ....||..+..|++-+.. 
T Consensus       199 Ge------------LrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V  266 (423)
T COG1239         199 GE------------LRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEV  266 (423)
T ss_pred             cc------------cchhhHhhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            65            8999999999999998877665444433321                234455566666654433 


Q ss_pred             cchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703        527 TLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLH  591 (720)
Q Consensus       527 ~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~  591 (720)
                      .+++++...+.+...++--.+         -|.-..+.|.++|+|.+.++.+|+.+|+++|..|.
T Consensus       267 ~l~~~~~~~ia~~~~~~~v~g---------~radi~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~  322 (423)
T COG1239         267 ELDDDAETKIAELCARLAVDG---------HRADIVVVRAAKALAALRGRTEVEEEDIREAAELA  322 (423)
T ss_pred             cCcHHHHHHHHHHHHHhccCC---------CchhhHHHHHHHHHHHhcCceeeehhhHHHHHhhh
Confidence            456666666655444332222         27778899999999999999999999999998874

>PRK13406 bchD magnesium chelatase subunit D; Provisional

Probab=99.83  E-value=1.2e-19  Score=207.37  Aligned_cols=218  Identities=21%  Similarity=0.231  Sum_probs=167.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCC--ccccCCcccccccccee--ecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRS--QYTSGKGSSAVGLTAYI--TKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~--~~~~g~~ss~~glta~~--~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      -|||.|++|||||++++.++.++|..  ...-..+.+...+.++.  ...-..|...++||.+.+||+||+|+||++.++
T Consensus        27 Gv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~  106 (584)
T PRK13406         27 GVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERLE  106 (584)
T ss_pred             eEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccCC
Confidence            69999999999999999999999852  22222333333333321  011123455689999999999999999999999


Q ss_pred             hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHH
Q psy17703        423 DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDA  502 (720)
Q Consensus       423 ~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~  502 (720)
                      +..+++|+++||++.++|.+.|...++|++|.+||+.|+..          +...||++|+|||++.+.+.++...+...
T Consensus       107 ~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~----------~~~~L~~~lLDRf~l~v~v~~~~~~~~~~  176 (584)
T PRK13406        107 PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAE----------EDERAPAALADRLAFHLDLDGLALRDARE  176 (584)
T ss_pred             HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChh----------cccCCCHHhHhheEEEEEcCCCChHHhcc
Confidence            99999999999999999999999999999999999977652          11369999999999999999887654321


Q ss_pred             HHHhhcchhHHHHHHHHHHhhc-CCcchHHHHHHHHHHHHHhhhcCCCCCCccc-CHHHHHHHHHHHHHHHHHcCCCCCC
Q psy17703        503 RLARHLDITVLRDYIAYAQEHL-SPTLSEEASQRLIQTYVDMRKLGAGRGRISA-YPRQLESLIRLSEAHAKMRYSETVE  580 (720)
Q Consensus       503 ~la~~i~~~~l~~~i~~ar~~~-~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~-t~R~le~lirla~A~A~l~~~~~V~  580 (720)
                             .......|..||+.+ .-.++++..+.+.+.+..+          .+ ++|....++|+|+|+|.+++++.|+
T Consensus       177 -------~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~----------gv~S~Ra~i~llraARa~AaL~Gr~~V~  239 (584)
T PRK13406        177 -------IPIDADDIAAARARLPAVGPPPEAIAALCAAAAAL----------GIASLRAPLLALRAARAAAALAGRTAVE  239 (584)
T ss_pred             -------cCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh----------CCCCcCHHHHHHHHHHHHHHHcCCCCCC
Confidence                   112233555666543 3356777777666554432          22 5699999999999999999999999


Q ss_pred             HHhHHHHHHHH
Q psy17703        581 VQDVDEAWRLH  591 (720)
Q Consensus       581 ~~Dv~~Ai~l~  591 (720)
                      .+|+.+|..+.
T Consensus       240 ~~dv~~Aa~lv  250 (584)
T PRK13406        240 EEDLALAARLV  250 (584)
T ss_pred             HHHHHHHHHHH
Confidence            99999999874

>PRK13531 regulatory ATPase RavA; Provisional

Probab=99.79  E-value=4.8e-18  Score=187.12  Aligned_cols=229  Identities=16%  Similarity=0.131  Sum_probs=153.6

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCc---cccCCcccccccccee-ecC-cccccee-eecceeeecCCceeeccc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ---YTSGKGSSAVGLTAYI-TKD-PETRQMV-LQTGALVLADSGVCCIDE  417 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~---~~~g~~ss~~glta~~-~~~-~~~~~~~-~~~G~l~lad~gI~~IDE  417 (720)
                      .+-||||.||||||||+++++++..+.+.-   +....-++...+.+.. ... ...+.+. ..+|.+..++  ++|+||
T Consensus        38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~--lLfLDE  115 (498)
T PRK13531         38 SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAE--IVFLDE  115 (498)
T ss_pred             cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCcccccc--EEeecc
Confidence            578999999999999999999999775421   1111101111222211 111 1134442 5567665554  999999


Q ss_pred             cccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCCh
Q psy17703        418 FDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQS  497 (720)
Q Consensus       418 idkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~  497 (720)
                      |+++++..|++|+++|+++.+++  .|....+|.++.++|+ ||.+.          .-.+.+++++||-+.+.+.++.+
T Consensus       116 I~rasp~~QsaLLeam~Er~~t~--g~~~~~lp~rfiv~AT-N~LPE----------~g~~leAL~DRFliri~vp~l~~  182 (498)
T PRK13531        116 IWKAGPAILNTLLTAINERRFRN--GAHEEKIPMRLLVTAS-NELPE----------ADSSLEALYDRMLIRLWLDKVQD  182 (498)
T ss_pred             cccCCHHHHHHHHHHHHhCeEec--CCeEEeCCCcEEEEEC-CCCcc----------cCCchHHhHhhEEEEEECCCCCc
Confidence            99999999999999999999987  7888999999888887 86542          11355799999977788877764


Q ss_pred             H-HHHHHHHhhc-------------chhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHH
Q psy17703        498 E-QFDARLARHL-------------DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESL  563 (720)
Q Consensus       498 ~-~~d~~la~~i-------------~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~l  563 (720)
                      + +..+.+..+.             +.+.+...-..++   .-.++++..+.+.+....+|...   ....+|||.+.++
T Consensus       183 ~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~---~V~v~d~v~eyI~~L~~~lr~~r---~~~~~SpR~~~~l  256 (498)
T PRK13531        183 KANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIG---KITLPDHVFELIFQLRQQLDALP---NAPYVSDRRWKKA  256 (498)
T ss_pred             hHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhc---ceeCCHHHHHHHHHHHHHHhcCC---CCCCcCcHHHHHH
Confidence            3 3344554321             2222322222221   23566777666665544444321   2234899999999


Q ss_pred             HHHHHHHHHHcCCCCCCHHhHHHHHHHHHH
Q psy17703        564 IRLSEAHAKMRYSETVEVQDVDEAWRLHRE  593 (720)
Q Consensus       564 irla~A~A~l~~~~~V~~~Dv~~Ai~l~~~  593 (720)
                      +++++|.|.+++|+.|+++|+..|...++.
T Consensus       257 ~~~akA~A~l~GR~~V~p~Dv~ll~~vL~H  286 (498)
T PRK13531        257 IRLLQASAFFSGRDAIAPIDLILLKDCLWH  286 (498)
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHHhHHHhcc
Confidence            999999999999999999999965554433

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=99.76  E-value=2.7e-17  Score=178.12  Aligned_cols=235  Identities=21%  Similarity=0.267  Sum_probs=168.9

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCc----cc-cCCccccccccceeecCccccceeeecceeeecCCceeecccc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ----YT-SGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEF  418 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~----~~-~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEi  418 (720)
                      .+-|+||.|+||||||+|++.+++.+....    ++ ....+...|...........+.+.+.+|.+..+.++++++|||
T Consensus        42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEI  121 (329)
T COG0714          42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEI  121 (329)
T ss_pred             cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecc
Confidence            467999999999999999999999885321    12 1223333444333222111566788889888877789999999


Q ss_pred             ccCChHHHHHHHHHHHhceEeeeccCeE-EeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCCh
Q psy17703        419 DKMSDTTRSILHEVMEQQTLSIAKAGII-CQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQS  497 (720)
Q Consensus       419 dkm~~~~~~~L~e~mE~~~vsi~k~g~~-~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~  497 (720)
                      ++.+++.+++|+++|+++.+++  .+.. ..++..+.++||+||.+..        ....||+++++||.+.+.+.+|..
T Consensus       122 nra~p~~q~aLl~~l~e~~vtv--~~~~~~~~~~~f~viaT~Np~e~~--------g~~~l~eA~ldRf~~~~~v~yp~~  191 (329)
T COG0714         122 NRAPPEVQNALLEALEERQVTV--PGLTTIRLPPPFIVIATQNPGEYE--------GTYPLPEALLDRFLLRIYVDYPDS  191 (329)
T ss_pred             ccCCHHHHHHHHHHHhCcEEEE--CCcCCcCCCCCCEEEEccCccccC--------CCcCCCHHHHhhEEEEEecCCCCc
Confidence            9999999999999999999999  5555 8889999999999986533        223699999999988888888855


Q ss_pred             HHHHHHHHhhcc-------hhHHHHHHHHH-----Hhhc-CCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHH
Q psy17703        498 EQFDARLARHLD-------ITVLRDYIAYA-----QEHL-SPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLI  564 (720)
Q Consensus       498 ~~~d~~la~~i~-------~~~l~~~i~~a-----r~~~-~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~li  564 (720)
                      ++....+..+..       ....+..+...     ...+ ...+++++.+.+.......|....  -...+++|....++
T Consensus       192 ~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~s~r~~~~~~  269 (329)
T COG0714         192 EEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKVPVSDEVIDYIVTLVAALREAPD--VALGASPRASLALL  269 (329)
T ss_pred             hHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHhhhccCCchHHHHHHHHHHHHhhccccc--hhccCCchhHHHHH
Confidence            554444444332       11222222111     1112 456677777777766666655322  23456789999999


Q ss_pred             HHHHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703        565 RLSEAHAKMRYSETVEVQDVDEAWRL  590 (720)
Q Consensus       565 rla~A~A~l~~~~~V~~~Dv~~Ai~l  590 (720)
                      ..+++.|.+.++..+..+|+......
T Consensus       270 ~~~~~~a~~~~~~~~~~~dv~~~~~~  295 (329)
T COG0714         270 AALRALALLDGRDAVIPDDVKALAEP  295 (329)
T ss_pred             HHHHhhhhhcCccccCHHHHHHHhhh
Confidence            99999999999999999999887553

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=99.76  E-value=1.9e-18  Score=157.38  Aligned_cols=125  Identities=27%  Similarity=0.406  Sum_probs=84.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCc----cc-cCCccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQ----YT-SGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~----~~-~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      ||||+|.||+|||++++++++.+....    ++ .-..++..|.   .+-+...+.+.+.+|.+.   .+|+++||+++.
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~---~v~~~~~~~f~~~~GPif---~~ill~DEiNra   74 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGF---PVYDQETGEFEFRPGPIF---TNILLADEINRA   74 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEE---EEEETTTTEEEEEE-TT----SSEEEEETGGGS
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceee---eeeccCCCeeEeecChhh---hceeeecccccC
Confidence            899999999999999999999875432    22 1223333333   333444577888888877   579999999999


Q ss_pred             ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703        422 SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD  487 (720)
Q Consensus       422 ~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd  487 (720)
                      ++..|++|+++|+++.|++  .|..+.+|..+.|+||.||.+..        ..+.||.++++||-
T Consensus        75 ppktQsAlLeam~Er~Vt~--~g~~~~lp~pf~ViATqNp~e~~--------Gty~Lpea~~DRF~  130 (131)
T PF07726_consen   75 PPKTQSALLEAMEERQVTI--DGQTYPLPDPFFVIATQNPVEQE--------GTYPLPEAQLDRFM  130 (131)
T ss_dssp             -HHHHHHHHHHHHHSEEEE--TTEEEE--SS-EEEEEE-TT--S--------------HHHHTTSS
T ss_pred             CHHHHHHHHHHHHcCeEEe--CCEEEECCCcEEEEEecCccccC--------ceecCCHHHhcccc
Confidence            9999999999999999999  99999999999999999997532        34579999999995

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=99.73  E-value=1.9e-16  Score=167.61  Aligned_cols=211  Identities=16%  Similarity=0.180  Sum_probs=141.3

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccC----CccccccccceeecCccccceeeecceeeec--CCceeeccc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSG----KGSSAVGLTAYITKDPETRQMVLQTGALVLA--DSGVCCIDE  417 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g----~~ss~~glta~~~~~~~~~~~~~~~G~l~la--d~gI~~IDE  417 (720)
                      +-||||.|+||||||++++.+++.+....+ ..+    ......|......++. .....++.|.+..|  +++++++||
T Consensus        64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g-~~~~~f~~GpL~~A~~~g~illlDE  142 (327)
T TIGR01650        64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDG-KQITEFRDGILPWALQHNVALCFDE  142 (327)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCC-cceeEEecCcchhHHhCCeEEEech
Confidence            458999999999999999999998754332 111    1222333333322222 12245577877654  577899999


Q ss_pred             cccCChHHHHHHHHHHH-hceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCC
Q psy17703        418 FDKMSDTTRSILHEVME-QQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQ  496 (720)
Q Consensus       418 idkm~~~~~~~L~e~mE-~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~  496 (720)
                      +|.++++.+.+|+.++| ++.+++...+....-+..|.++||+||.+.+ +..--......+|.++++||-+++.+.+++
T Consensus       143 in~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~G-d~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~  221 (327)
T TIGR01650       143 YDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLG-DTTGLYHGTQQINQAQMDRWSIVTTLNYLE  221 (327)
T ss_pred             hhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcC-CCCcceeeeecCCHHHHhheeeEeeCCCCC
Confidence            99999999999999999 5688886666555556689999999998733 111112345579999999998777888887


Q ss_pred             hHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcC-CCCCCcccCHHHHHHHHHHHHHH
Q psy17703        497 SEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLG-AGRGRISAYPRQLESLIRLSEAH  570 (720)
Q Consensus       497 ~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~-~~~~~~~~t~R~le~lirla~A~  570 (720)
                      .+.+.+.+....            . .......++..+.+++.....|... ...-...+|||.+.+|.+++...
T Consensus       222 ~e~E~~Il~~~~------------~-~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~~~~~f  283 (327)
T TIGR01650       222 HDNEAAIVLAKA------------K-GFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAENAEIF  283 (327)
T ss_pred             HHHHHHHHHhhc------------c-CCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHHHHHhh
Confidence            766554444211            0 0111123556677777666677632 12335678999999999887643

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=99.70  E-value=5e-16  Score=179.59  Aligned_cols=175  Identities=20%  Similarity=0.267  Sum_probs=135.4

Q ss_pred             eecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccC-----e---EEeecCceEEEecccCCCCCCCCCcc
Q psy17703        400 LQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAG-----I---ICQLNARTSILAAANPCDSQWNTSKT  471 (720)
Q Consensus       400 ~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g-----~---~~~l~a~~~iiaaaNp~~g~~~~~~~  471 (720)
                      .++|.+..|++|++||||++.|++..|..|+++|+++++.+....     .   ....|.++.+|+++||..        
T Consensus       208 i~~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~--------  279 (608)
T TIGR00764       208 VEAGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDD--------  279 (608)
T ss_pred             CCCCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHH--------
Confidence            479999999999999999999999999999999999998884421     1   234678999999999752        


Q ss_pred             cccccCCChhhhccce---eEEEecC--CChHHHHHHHHhhcchhHHHHHHHH-HHhh-cCCcchHHHHHHHHHHHHHhh
Q psy17703        472 IIDNIRLPHTLLSRFD---LIFLLLD--PQSEQFDARLARHLDITVLRDYIAY-AQEH-LSPTLSEEASQRLIQTYVDMR  544 (720)
Q Consensus       472 ~~~~~~l~~aLlsRFd---li~~l~d--~~~~~~d~~la~~i~~~~l~~~i~~-ar~~-~~p~ls~ea~~~l~~~y~~lr  544 (720)
                         ...++++|++||+   +.+.+.+  +.+.+....+++         |+.. ++++ ..|.+++++.+.+.++|..+ 
T Consensus       280 ---l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~---------~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~-  346 (608)
T TIGR00764       280 ---LEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQ---------FVAQEVKKDGRIPHFTRDAVEEIVREAQRR-  346 (608)
T ss_pred             ---HhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHH---------HHHHHHHHhCCCCcCCHHHHHHHHHHHHHH-
Confidence               1258899999999   6666553  334443333332         3322 3333 46789999999999987654 


Q ss_pred             hcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHHHHHH
Q psy17703        545 KLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQ  597 (720)
Q Consensus       545 ~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~~l~~  597 (720)
                        ...++.++.+.|++..++|.|.+.|+.+++..|+.+|+.+|++..+....+
T Consensus       347 --ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~~~~~  397 (608)
T TIGR00764       347 --AGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKTLEKQ  397 (608)
T ss_pred             --HhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHHHHHH
Confidence              334556888899999999999999999999999999999999876655443

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=99.69  E-value=4.3e-16  Score=163.18  Aligned_cols=212  Identities=18%  Similarity=0.228  Sum_probs=140.0

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCc----ccccccccee-------------ecCccccceeeeccee
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKG----SSAVGLTAYI-------------TKDPETRQMVLQTGAL  405 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~----ss~~glta~~-------------~~~~~~~~~~~~~G~l  405 (720)
                      .+.|+||.||||||||++++++++.+..... ..+..    +...|.....             .+..........+|.+
T Consensus        20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l   99 (262)
T TIGR02640        20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL   99 (262)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence            4679999999999999999999986643322 22221    1111110000             0000011122346666


Q ss_pred             ee--cCCceeeccccccCChHHHHHHHHHHHhceEeeecc---CeEEeecCceEEEecccCCCCCCCCCcccccccCCCh
Q psy17703        406 VL--ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKA---GIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPH  480 (720)
Q Consensus       406 ~l--ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~---g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~  480 (720)
                      ..  ..+++++|||+++++++.++.|+++||++.+++...   +.....+.+|.+|+|+||....        ....+++
T Consensus       100 ~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~--------g~~~l~~  171 (262)
T TIGR02640       100 TLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYA--------GVHETQD  171 (262)
T ss_pred             HHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccc--------ceecccH
Confidence            64  478899999999999999999999999999888532   2345577899999999986422        1124689


Q ss_pred             hhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHH
Q psy17703        481 TLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQL  560 (720)
Q Consensus       481 aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~l  560 (720)
                      +|++|| ..+.+..|+.++..+.+..+                  ..+.++..+.+++.+.++|..+.   ....++|++
T Consensus       172 aL~~R~-~~i~i~~P~~~~e~~Il~~~------------------~~~~~~~~~~iv~~~~~~R~~~~---~~~~~~r~~  229 (262)
T TIGR02640       172 ALLDRL-ITIFMDYPDIDTETAILRAK------------------TDVAEDSAATIVRLVREFRASGD---EITSGLRAS  229 (262)
T ss_pred             HHHhhc-EEEECCCCCHHHHHHHHHHh------------------hCCCHHHHHHHHHHHHHHHhhCC---ccCCcHHHH
Confidence            999999 45666666544443333321                  13577888899999999994222   234457877


Q ss_pred             HHHHHHHHHHHHHcCCCCCCHHhHHHHH
Q psy17703        561 ESLIRLSEAHAKMRYSETVEVQDVDEAW  588 (720)
Q Consensus       561 e~lirla~A~A~l~~~~~V~~~Dv~~Ai  588 (720)
                      ..|.|.+++   +.++..++++|+....
T Consensus       230 i~~~~~~~~---~~~~~~~~~~~~~~~~  254 (262)
T TIGR02640       230 LMIAEVATQ---QDIPVDVDDEDFVDLC  254 (262)
T ss_pred             HHHHHHHHH---cCCCCCCCcHHHHHHH
Confidence            666665555   4678999999998764

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=99.66  E-value=8.6e-15  Score=148.40  Aligned_cols=192  Identities=24%  Similarity=0.323  Sum_probs=143.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCc-cccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHH
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQ-YTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTT  425 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~-~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~  425 (720)
                      |+||+||||+|||+||..+|+.+.-.. .++|.--.-.|..++...              .+..+.|+|||||+++++..
T Consensus        54 HvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt--------------~Le~~DVLFIDEIHrl~~~v  119 (332)
T COG2255          54 HVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILT--------------NLEEGDVLFIDEIHRLSPAV  119 (332)
T ss_pred             eEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHHh--------------cCCcCCeEEEehhhhcChhH
Confidence            999999999999999999999875332 233322211111111111              13457899999999999999


Q ss_pred             HHHHHHHHHhceEeee--c--cCeEEeec-CceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHH
Q psy17703        426 RSILHEVMEQQTLSIA--K--AGIICQLN-ARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQF  500 (720)
Q Consensus       426 ~~~L~e~mE~~~vsi~--k--~g~~~~l~-a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~  500 (720)
                      -+.|+.+||+..+.|-  +  +.....++ ..|++|+|+...+             .|+.||.+||-++..+.....++.
T Consensus       120 EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G-------------~lt~PLrdRFGi~~rlefY~~~eL  186 (332)
T COG2255         120 EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAG-------------MLTNPLRDRFGIIQRLEFYTVEEL  186 (332)
T ss_pred             HHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccc-------------cccchhHHhcCCeeeeecCCHHHH
Confidence            9999999999887653  2  22334444 4699999998655             589999999999999988777766


Q ss_pred             HHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCC
Q psy17703        501 DARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVE  580 (720)
Q Consensus       501 d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~  580 (720)
                      .+.+.+             ....+.-.+++++...|...     .        ..|||-...|+|--+..|..++...++
T Consensus       187 ~~Iv~r-------------~a~~l~i~i~~~~a~eIA~r-----S--------RGTPRIAnRLLrRVRDfa~V~~~~~I~  240 (332)
T COG2255         187 EEIVKR-------------SAKILGIEIDEEAALEIARR-----S--------RGTPRIANRLLRRVRDFAQVKGDGDID  240 (332)
T ss_pred             HHHHHH-------------HHHHhCCCCChHHHHHHHHh-----c--------cCCcHHHHHHHHHHHHHHHHhcCCccc
Confidence            555442             33446778899998888632     1        357899999999999999999999999


Q ss_pred             HHhHHHHHHHH
Q psy17703        581 VQDVDEAWRLH  591 (720)
Q Consensus       581 ~~Dv~~Ai~l~  591 (720)
                      .+-+.+|+..+
T Consensus       241 ~~ia~~aL~~L  251 (332)
T COG2255         241 RDIADKALKML  251 (332)
T ss_pred             HHHHHHHHHHh
Confidence            98888887654

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.66  E-value=3.1e-16  Score=156.21  Aligned_cols=172  Identities=22%  Similarity=0.308  Sum_probs=107.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT  424 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~  424 (720)
                      -|+||+||||+|||+||+.+|+.+..... ++|......+..+....              .+..+.|+|||||+++++.
T Consensus        51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~--------------~l~~~~ILFIDEIHRlnk~  116 (233)
T PF05496_consen   51 DHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILT--------------NLKEGDILFIDEIHRLNKA  116 (233)
T ss_dssp             -EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHH--------------T--TT-EEEECTCCC--HH
T ss_pred             ceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHH--------------hcCCCcEEEEechhhccHH
Confidence            39999999999999999999998865432 22211111111111100              1235679999999999999


Q ss_pred             HHHHHHHHHHhceEeee-ccC---eEEeec-CceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHH
Q psy17703        425 TRSILHEVMEQQTLSIA-KAG---IICQLN-ARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQ  499 (720)
Q Consensus       425 ~~~~L~e~mE~~~vsi~-k~g---~~~~l~-a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~  499 (720)
                      .|+.|+.+||++.+.+- .+|   ...+++ .+|++|+|++..+             .|++||.+||-+++.+.....++
T Consensus       117 ~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g-------------~ls~pLrdRFgi~~~l~~Y~~~e  183 (233)
T PF05496_consen  117 QQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAG-------------LLSSPLRDRFGIVLRLEFYSEEE  183 (233)
T ss_dssp             HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGC-------------CTSHCCCTTSSEEEE----THHH
T ss_pred             HHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecccc-------------ccchhHHhhcceecchhcCCHHH
Confidence            99999999999998642 333   234444 5799999998654             59999999999988888777665


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703        500 FDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH  570 (720)
Q Consensus       500 ~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~  570 (720)
                      ....+.             .......-.+++++...|...             -..|||-...|+|-.+..
T Consensus       184 l~~Iv~-------------r~a~~l~i~i~~~~~~~Ia~r-------------srGtPRiAnrll~rvrD~  228 (233)
T PF05496_consen  184 LAKIVK-------------RSARILNIEIDEDAAEEIARR-------------SRGTPRIANRLLRRVRDF  228 (233)
T ss_dssp             HHHHHH-------------HCCHCTT-EE-HHHHHHHHHC-------------TTTSHHHHHHHHHHHCCC
T ss_pred             HHHHHH-------------HHHHHhCCCcCHHHHHHHHHh-------------cCCChHHHHHHHHHHHHH
Confidence            544433             333445677888888877631             135789888888765433

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=99.57  E-value=5.9e-14  Score=160.68  Aligned_cols=209  Identities=18%  Similarity=0.245  Sum_probs=139.8

Q ss_pred             CCCCccEEEEcCCCCHHHHHHHHHHhhCCCC---------ccc--cCCc--ccccccccee---ecCc---------ccc
Q psy17703        342 TPAEINILLCGDPGTSKSQLLSYVYDLVPRS---------QYT--SGKG--SSAVGLTAYI---TKDP---------ETR  396 (720)
Q Consensus       342 ~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~---------~~~--~g~~--ss~~glta~~---~~~~---------~~~  396 (720)
                      .+...|+||+||||||||++|+++++.+.+.         .+.  +...  .+.-++....   ..++         ..+
T Consensus        83 ~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g  162 (531)
T TIGR02902        83 GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAG  162 (531)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCC
Confidence            3456899999999999999999998753211         111  1000  0000000000   0011         112


Q ss_pred             ceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccC---------------eEEeecCceEEEecccC
Q psy17703        397 QMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAG---------------IICQLNARTSILAAANP  461 (720)
Q Consensus       397 ~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g---------------~~~~l~a~~~iiaaaNp  461 (720)
                      ....++|.+..+++|++||||++.|+++.|+.|+.+||++.+.+..+.               ....+|+++.+|+|+|.
T Consensus       163 ~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~  242 (531)
T TIGR02902       163 IPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTR  242 (531)
T ss_pred             cccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecC
Confidence            233467888899999999999999999999999999999887653110               02346888999988874


Q ss_pred             CCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Q psy17703        462 CDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYV  541 (720)
Q Consensus       462 ~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~  541 (720)
                      ...            .+++++++||. .+.+.+...++.... .        +    .+-++....+++++.+.+..+..
T Consensus       243 ~p~------------~L~paLrsR~~-~I~f~pL~~eei~~I-l--------~----~~a~k~~i~is~~al~~I~~y~~  296 (531)
T TIGR02902       243 NPE------------EIPPALRSRCV-EIFFRPLLDEEIKEI-A--------K----NAAEKIGINLEKHALELIVKYAS  296 (531)
T ss_pred             Ccc------------cCChHHhhhhh-eeeCCCCCHHHHHHH-H--------H----HHHHHcCCCcCHHHHHHHHHhhh
Confidence            432            48999999996 445665554443222 2        1    12222456789999987765421


Q ss_pred             HhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703        542 DMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL  590 (720)
Q Consensus       542 ~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l  590 (720)
                                    +.|++..+++.|...|..+.+..|+.+|+++++..
T Consensus       297 --------------n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~  331 (531)
T TIGR02902       297 --------------NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN  331 (531)
T ss_pred             --------------hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence                          13999999999988888888889999999999863

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite

Probab=99.56  E-value=1.3e-15  Score=164.52  Aligned_cols=67  Identities=66%  Similarity=1.004  Sum_probs=54.6

Q ss_pred             hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCCCCCC
Q psy17703        654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNT  720 (720)
Q Consensus       654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~~~~~  720 (720)
                      .|+++.+++|+||||||++|+++++.+|||+||||+++|+|+|++++|||||+|+|||||++||||.
T Consensus       114 aGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~  180 (331)
T PF00493_consen  114 AGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDP  180 (331)
T ss_dssp             E-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-T
T ss_pred             CCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcch
Confidence            7889999999999999999999999999999999999999999999999999999999999999973

; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]

Probab=99.55  E-value=2.6e-14  Score=154.83  Aligned_cols=210  Identities=20%  Similarity=0.248  Sum_probs=151.1

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCcc----ccCC---ccccccccceeecCccccceeeecceeeecCCceeecc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQY----TSGK---GSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCID  416 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~----~~g~---~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~ID  416 (720)
                      .+.+|||.|++||||..+|++|++.+||...    ...-   ++-.-....+..+..+||...-+.|.+.+||||.+|+|
T Consensus       245 Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLD  324 (550)
T COG3604         245 SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLD  324 (550)
T ss_pred             CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccccccccchhccCcceeecCCCeEech
Confidence            6899999999999999999999999988522    1110   01000111223455677888889999999999999999


Q ss_pred             ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCC
Q psy17703        417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQ  496 (720)
Q Consensus       417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~  496 (720)
                      ||..|+.+.|..|+.++.++.+.  +.|...+++.++.||||+|..-      +..+.+-++...|+.|.. +|.+.-||
T Consensus       325 EIGelPL~lQaKLLRvLQegEie--RvG~~r~ikVDVRiIAATNRDL------~~~V~~G~FRaDLYyRLs-V~Pl~lPP  395 (550)
T COG3604         325 EIGELPLALQAKLLRVLQEGEIE--RVGGDRTIKVDVRVIAATNRDL------EEMVRDGEFRADLYYRLS-VFPLELPP  395 (550)
T ss_pred             hhccCCHHHHHHHHHHHhhccee--ecCCCceeEEEEEEEeccchhH------HHHHHcCcchhhhhhccc-ccccCCCC
Confidence            99999999999999999998865  5899999999999999999542      233444568888999998 55555444


Q ss_pred             hHHHHHHHHhhcchhHHHH-HHHHHHhhc---CCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703        497 SEQFDARLARHLDITVLRD-YIAYAQEHL---SPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK  572 (720)
Q Consensus       497 ~~~~d~~la~~i~~~~l~~-~i~~ar~~~---~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~  572 (720)
                      -.++..      |..+|.+ |+..++...   .-.++++|.+.|.+|            .||.+.|.||.+++-|--.| 
T Consensus       396 LRER~~------DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y------------~wPGNVRELen~veRavlla-  456 (550)
T COG3604         396 LRERPE------DIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSY------------EWPGNVRELENVVERAVLLA-  456 (550)
T ss_pred             cccCCc------cHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcC------------CCCCcHHHHHHHHHHHHHHh-
Confidence            333221      2233333 334444332   336899999888755            47889999999998776665 


Q ss_pred             HcCCCCCCHHhH
Q psy17703        573 MRYSETVEVQDV  584 (720)
Q Consensus       573 l~~~~~V~~~Dv  584 (720)
                         ...++.+|+
T Consensus       457 ---~~~~~~~d~  465 (550)
T COG3604         457 ---GRLTRRGDL  465 (550)
T ss_pred             ---cccCCCcce
Confidence               234555665

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.54  E-value=1.2e-14  Score=137.32  Aligned_cols=129  Identities=25%  Similarity=0.390  Sum_probs=88.8

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccC-CccccccccceeecCccccceeeecceeeec--CCceeeccccccCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQY-TSG-KGSSAVGLTAYITKDPETRQMVLQTGALVLA--DSGVCCIDEFDKMS  422 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g-~~ss~~glta~~~~~~~~~~~~~~~G~l~la--d~gI~~IDEidkm~  422 (720)
                      ||||+||||+|||++++++++.+....+ ..+ ..++...+...+...  .+.....+|.++.+  ++++++|||+++++
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~~~~~il~lDEin~a~   78 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAMRKGGILVLDEINRAP   78 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTHHEEEEEEESSCGG--
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec--ccccccccccccccccceeEEEECCcccCC
Confidence            7999999999999999999998854432 122 223333333333222  34455566776644  68899999999999


Q ss_pred             hHHHHHHHHHHHhceEeeeccCeEEeecC------ceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703        423 DTTRSILHEVMEQQTLSIAKAGIICQLNA------RTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF  486 (720)
Q Consensus       423 ~~~~~~L~e~mE~~~vsi~k~g~~~~l~a------~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF  486 (720)
                      ++.+..|+.+++++.+.+...+.....+.      .+.+|||+||.. .        ....++++|+|||
T Consensus        79 ~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~--------~~~~l~~al~~Rf  139 (139)
T PF07728_consen   79 PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-K--------GRKELSPALLDRF  139 (139)
T ss_dssp             HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST-----------TTTTCHHHHTT-
T ss_pred             HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-C--------CcCcCCHHHHhhC
Confidence            99999999999999988766665555544      499999999887 1        1226999999998

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PHA02244 ATPase-like protein

Probab=99.53  E-value=1e-13  Score=148.28  Aligned_cols=143  Identities=15%  Similarity=0.225  Sum_probs=101.1

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceee--ecCCceeeccccccC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALV--LADSGVCCIDEFDKM  421 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~--lad~gI~~IDEidkm  421 (720)
                      .+.||||+||||||||+++++++..+....+..........+.+.. .  ..+.  .+.|.+.  ...+|+|+|||++.+
T Consensus       118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i-~--~~g~--~~dgpLl~A~~~GgvLiLDEId~a  192 (383)
T PHA02244        118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFI-D--ANGK--FHETPFYEAFKKGGLFFIDEIDAS  192 (383)
T ss_pred             cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccc-c--cccc--ccchHHHHHhhcCCEEEEeCcCcC
Confidence            5789999999999999999999998754433221111111111111 0  1122  2334332  357899999999999


Q ss_pred             ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCC
Q psy17703        422 SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQ  496 (720)
Q Consensus       422 ~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~  496 (720)
                      +++.+..|+.+++++.+.+  .|.....+.+|++|||+||...+|+..  +.....|++++++||- .+.+.+|.
T Consensus       193 ~p~vq~~L~~lLd~r~l~l--~g~~i~~h~~FRlIATsN~~~~G~~~~--y~G~k~L~~AllDRFv-~I~~dyp~  262 (383)
T PHA02244        193 IPEALIIINSAIANKFFDF--ADERVTAHEDFRVISAGNTLGKGADHI--YVARNKIDGATLDRFA-PIEFDYDE  262 (383)
T ss_pred             CHHHHHHHHHHhccCeEEe--cCcEEecCCCEEEEEeeCCCccCcccc--cCCCcccCHHHHhhcE-EeeCCCCc
Confidence            9999999999999887665  566777788999999999988777542  1234479999999995 67777765

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]

Probab=99.52  E-value=6.4e-14  Score=153.91  Aligned_cols=210  Identities=21%  Similarity=0.288  Sum_probs=142.4

Q ss_pred             CCCccEEEEcCCCCHHHHHHHHHHhhCCCCcc--c---c------CCccccccccceeecCccccceee-ecceeeecCC
Q psy17703        343 PAEINILLCGDPGTSKSQLLSYVYDLVPRSQY--T---S------GKGSSAVGLTAYITKDPETRQMVL-QTGALVLADS  410 (720)
Q Consensus       343 pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~--~---~------g~~ss~~glta~~~~~~~~~~~~~-~~G~l~lad~  410 (720)
                      +.+.+|||.|++||||..+|+++++.+||..-  .   +      -.+|..+|..    +..+||...- ++|.+.+|++
T Consensus       266 ~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye----~GAFTGA~~~GK~GlfE~A~g  341 (560)
T COG3829         266 KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYE----KGAFTGASKGGKPGLFELANG  341 (560)
T ss_pred             CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcC----CccccccccCCCCcceeeccC
Confidence            47899999999999999999999999988421  0   1      1122222322    2234444333 7899999999


Q ss_pred             ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703        411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF  490 (720)
Q Consensus       411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~  490 (720)
                      |.+|+|||..|+...|..|+++++++.+.  +-|.....+.++.||||+|....      ...+.-.|...|..|..++=
T Consensus       342 GTLFLDEIgempl~LQaKLLRVLQEkei~--rvG~t~~~~vDVRIIAATN~nL~------~~i~~G~FReDLYYRLNV~~  413 (560)
T COG3829         342 GTLFLDEIGEMPLPLQAKLLRVLQEKEIE--RVGGTKPIPVDVRIIAATNRNLE------KMIAEGTFREDLYYRLNVIP  413 (560)
T ss_pred             CeEEehhhccCCHHHHHHHHHHHhhceEE--ecCCCCceeeEEEEEeccCcCHH------HHHhcCcchhhheeeeceee
Confidence            99999999999999999999999988865  48899999999999999996532      23344467888899998443


Q ss_pred             EecCCChHHHHHHHHhhcchhHHHHHH-HH-HHhh--cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703        491 LLLDPQSEQFDARLARHLDITVLRDYI-AY-AQEH--LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL  566 (720)
Q Consensus       491 ~l~d~~~~~~d~~la~~i~~~~l~~~i-~~-ar~~--~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl  566 (720)
                      ...+| -.++-+      |...|-.|+ .. .+..  ..+.+++++...|..|            .||.+.|+|+.++.-
T Consensus       414 i~iPP-LReR~e------DI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y------------~WPGNVRELeNviER  474 (560)
T COG3829         414 ITIPP-LRERKE------DIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRY------------DWPGNVRELENVIER  474 (560)
T ss_pred             ecCCC-cccCcc------hHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhC------------CCCchHHHHHHHHHH
Confidence            33232 222111      222233322 22 2221  2346899999888754            689999999999875


Q ss_pred             HHHHHHHcCCCCCCHHhHH
Q psy17703        567 SEAHAKMRYSETVEVQDVD  585 (720)
Q Consensus       567 a~A~A~l~~~~~V~~~Dv~  585 (720)
                      +--.  +.-...|+.+|+.
T Consensus       475 ~v~~--~~~~~~I~~~~lp  491 (560)
T COG3829         475 AVNL--VESDGLIDADDLP  491 (560)
T ss_pred             HHhc--cCCcceeehhhcc
Confidence            4321  2333345555554

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=99.50  E-value=1.4e-13  Score=151.54  Aligned_cols=211  Identities=19%  Similarity=0.265  Sum_probs=148.5

Q ss_pred             CCCccEEEEcCCCCHHHHHHHHHHhhCCCCc--cc---cCC------ccccccccceeecCccccceeeecceeeecCCc
Q psy17703        343 PAEINILLCGDPGTSKSQLLSYVYDLVPRSQ--YT---SGK------GSSAVGLTAYITKDPETRQMVLQTGALVLADSG  411 (720)
Q Consensus       343 pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~--~~---~g~------~ss~~glta~~~~~~~~~~~~~~~G~l~lad~g  411 (720)
                      +.+.+||+.|++||||-.+|+++++.++|.-  |.   ++-      +|-.+|    ..+..+||....+.|.+..|+||
T Consensus       162 ~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFG----hekGAFTGA~~~r~G~fE~A~GG  237 (464)
T COG2204         162 PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFG----HEKGAFTGAITRRIGRFEQANGG  237 (464)
T ss_pred             CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhc----ccccCcCCcccccCcceeEcCCc
Confidence            4789999999999999999999999998731  11   010      111111    12333566777789999999999


Q ss_pred             eeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEE
Q psy17703        412 VCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFL  491 (720)
Q Consensus       412 I~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~  491 (720)
                      .+|||||..|+.+.|..|+++++++.+.-  -|...+.+.++.||||+|...      +....+-.|.+.|+.|+. ++.
T Consensus       238 TLfLDEI~~mpl~~Q~kLLRvLqe~~~~r--vG~~~~i~vdvRiIaaT~~dL------~~~v~~G~FReDLyyRLn-V~~  308 (464)
T COG2204         238 TLFLDEIGEMPLELQVKLLRVLQEREFER--VGGNKPIKVDVRIIAATNRDL------EEEVAAGRFREDLYYRLN-VVP  308 (464)
T ss_pred             eEEeeccccCCHHHHHHHHHHHHcCeeEe--cCCCcccceeeEEEeecCcCH------HHHHHcCCcHHHHHhhhc-cce
Confidence            99999999999999999999999998764  888999999999999999543      223344468899999998 344


Q ss_pred             ecCCChHHHHHHHHhhcchhHHHHHHHHHHh---hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703        492 LLDPQSEQFDARLARHLDITVLRDYIAYAQE---HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE  568 (720)
Q Consensus       492 l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~---~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~  568 (720)
                      +.-|+-.++.+-|-     .+...|+..+..   .-.+.+++++.+.|..|            +||.+.|+|+.+++.+-
T Consensus       309 i~iPpLRER~EDIp-----~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y------------~WPGNVREL~N~ver~~  371 (464)
T COG2204         309 LRLPPLRERKEDIP-----LLAEHFLKRFAAELGRPPKGFSPEALAALLAY------------DWPGNVRELENVVERAV  371 (464)
T ss_pred             ecCCcccccchhHH-----HHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC------------CCChHHHHHHHHHHHHH
Confidence            44333333222111     122233332222   23568999999988754            68999999999988765


Q ss_pred             HHHHHcCCCCCCHHhHHH
Q psy17703        569 AHAKMRYSETVEVQDVDE  586 (720)
Q Consensus       569 A~A~l~~~~~V~~~Dv~~  586 (720)
                      ..+   ..+.++.+|+.-
T Consensus       372 il~---~~~~i~~~~l~~  386 (464)
T COG2204         372 ILS---EGPEIEVEDLPL  386 (464)
T ss_pred             hcC---Cccccchhhccc
Confidence            543   334566666553

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=99.49  E-value=5.6e-13  Score=153.88  Aligned_cols=166  Identities=19%  Similarity=0.262  Sum_probs=126.2

Q ss_pred             eecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeecc----Ce----EEeecCceEEEecccCCCCCCCCCcc
Q psy17703        400 LQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKA----GI----ICQLNARTSILAAANPCDSQWNTSKT  471 (720)
Q Consensus       400 ~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~----g~----~~~l~a~~~iiaaaNp~~g~~~~~~~  471 (720)
                      +++|.+..|++|++||||++.|++..|..|+++|+++.+.+...    +.    ....|.++.+|+++|+..        
T Consensus       217 i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~l--------  288 (637)
T PRK13765        217 VEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDA--------  288 (637)
T ss_pred             CCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCH--------
Confidence            38999999999999999999999999999999999999877221    00    345678999999999842        


Q ss_pred             cccccCCChhhhccce---eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhh-----cCCcchHHHHHHHHHHHHHh
Q psy17703        472 IIDNIRLPHTLLSRFD---LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEH-----LSPTLSEEASQRLIQTYVDM  543 (720)
Q Consensus       472 ~~~~~~l~~aLlsRFd---li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~-----~~p~ls~ea~~~l~~~y~~l  543 (720)
                       .  ..+.++|.+||.   +.+.+.+..+.          +.+..++|+.+..+.     -.|.++++|...++++|...
T Consensus       289 -l--~~~dpdL~~rfk~~~v~v~f~~~~~d----------~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~  355 (637)
T PRK13765        289 -L--ENMHPALRSRIKGYGYEVYMRDTMED----------TPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRR  355 (637)
T ss_pred             -H--HhhhHHHHHHhccCeEEEEcccccCC----------CHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHH
Confidence             1  135789999996   45555443221          223345555544432     24689999999999998754


Q ss_pred             hhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHH
Q psy17703        544 RKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       544 r~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      -   ..++.++...|++..|+|.|...|+.+.++.|+.+|+.+|+.
T Consensus       356 a---g~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~  398 (637)
T PRK13765        356 A---GRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKK  398 (637)
T ss_pred             h---CCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHH
Confidence            2   234456677899999999999999999999999999998875

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.44  E-value=1.9e-12  Score=140.27  Aligned_cols=191  Identities=23%  Similarity=0.304  Sum_probs=128.9

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT  424 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~  424 (720)
                      -|+||+||||||||++++++++.+..... ..+......+         ..... +    -.+..++++||||++.++..
T Consensus        52 ~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~---------~l~~~-l----~~l~~~~vl~IDEi~~l~~~  117 (328)
T PRK00080         52 DHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPG---------DLAAI-L----TNLEEGDVLFIDEIHRLSPV  117 (328)
T ss_pred             CcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChH---------HHHHH-H----HhcccCCEEEEecHhhcchH
Confidence            48999999999999999999997753221 1111000000         00000 0    01245789999999999998


Q ss_pred             HHHHHHHHHHhceEee--eccCe----EEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChH
Q psy17703        425 TRSILHEVMEQQTLSI--AKAGI----ICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSE  498 (720)
Q Consensus       425 ~~~~L~e~mE~~~vsi--~k~g~----~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~  498 (720)
                      .++.|+.+|++..+.+  .+...    ...+| ++.+++|+|+..             .++++|.|||.+++.+..++.+
T Consensus       118 ~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~-~~~li~at~~~~-------------~l~~~L~sRf~~~~~l~~~~~~  183 (328)
T PRK00080        118 VEEILYPAMEDFRLDIMIGKGPAARSIRLDLP-PFTLIGATTRAG-------------LLTSPLRDRFGIVQRLEFYTVE  183 (328)
T ss_pred             HHHHHHHHHHhcceeeeeccCccccceeecCC-CceEEeecCCcc-------------cCCHHHHHhcCeeeecCCCCHH
Confidence            8899999999876543  11111    11233 478899888654             4789999999988888887766


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCC
Q psy17703        499 QFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSET  578 (720)
Q Consensus       499 ~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~  578 (720)
                      +....+.+             ........+++++.+.|....             ..+||.+..+++.....|..+....
T Consensus       184 e~~~il~~-------------~~~~~~~~~~~~~~~~ia~~~-------------~G~pR~a~~~l~~~~~~a~~~~~~~  237 (328)
T PRK00080        184 ELEKIVKR-------------SARILGVEIDEEGALEIARRS-------------RGTPRIANRLLRRVRDFAQVKGDGV  237 (328)
T ss_pred             HHHHHHHH-------------HHHHcCCCcCHHHHHHHHHHc-------------CCCchHHHHHHHHHHHHHHHcCCCC
Confidence            55433332             222246678889888887431             2346989888888888887777778


Q ss_pred             CCHHhHHHHHHH
Q psy17703        579 VEVQDVDEAWRL  590 (720)
Q Consensus       579 V~~~Dv~~Ai~l  590 (720)
                      ++.+++..++..
T Consensus       238 I~~~~v~~~l~~  249 (328)
T PRK00080        238 ITKEIADKALDM  249 (328)
T ss_pred             CCHHHHHHHHHH
Confidence            999999998753

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=99.44  E-value=8.8e-13  Score=142.41  Aligned_cols=200  Identities=20%  Similarity=0.215  Sum_probs=132.0

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCC--ccc--cCCccccc---cccceeecCccccceeeecceeeecCCceeecc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRS--QYT--SGKGSSAV---GLTAYITKDPETRQMVLQTGALVLADSGVCCID  416 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~--~~~--~g~~ss~~---glta~~~~~~~~~~~~~~~G~l~lad~gI~~ID  416 (720)
                      .+.+|||.|+|||||+.+|++++...++.  .+.  .....+..   ....+..+...++.....+|.+..|++|++|||
T Consensus        21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ld  100 (329)
T TIGR02974        21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLD  100 (329)
T ss_pred             CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCCCEEEeC
Confidence            57899999999999999999999988652  111  11100000   000011111223333346788899999999999


Q ss_pred             ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee-EEEecCC
Q psy17703        417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL-IFLLLDP  495 (720)
Q Consensus       417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl-i~~l~d~  495 (720)
                      |++.|+.+.|..|+.+++++.+.  +.|.....+.++.+|+|+|....      .....-.+.+.|+.||.. .+.+++.
T Consensus       101 ei~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~RiI~at~~~l~------~~~~~g~fr~dL~~rl~~~~i~lPpL  172 (329)
T TIGR02974       101 ELATASLLVQEKLLRVIEYGEFE--RVGGSQTLQVDVRLVCATNADLP------ALAAEGRFRADLLDRLAFDVITLPPL  172 (329)
T ss_pred             ChHhCCHHHHHHHHHHHHcCcEE--ecCCCceeccceEEEEechhhHH------HHhhcCchHHHHHHHhcchhcCCCch
Confidence            99999999999999999988765  36666778889999999986531      112233577899999963 4444444


Q ss_pred             ChHHHHHHHHhhcchhHHHHHHHH-HHhh-cC--CcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703        496 QSEQFDARLARHLDITVLRDYIAY-AQEH-LS--PTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH  570 (720)
Q Consensus       496 ~~~~~d~~la~~i~~~~l~~~i~~-ar~~-~~--p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~  570 (720)
                      .+...|  |.     .+++.|+.. +++. ..  +.+++++.+.|..|            +||.+.|+|+.+++-+-..
T Consensus       173 ReR~eD--I~-----~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y------------~WPGNvrEL~n~i~~~~~~  232 (329)
T TIGR02974       173 RERQED--IM-----LLAEHFAIRMARELGLPLFPGFTPQAREQLLEY------------HWPGNVRELKNVVERSVYR  232 (329)
T ss_pred             hhhhhh--HH-----HHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhC------------CCCchHHHHHHHHHHHHHh
Confidence            332222  11     123334432 3321 12  57999999998755            5888999999988755443

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=99.41  E-value=5.6e-13  Score=147.28  Aligned_cols=194  Identities=15%  Similarity=0.201  Sum_probs=121.7

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD  423 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~  423 (720)
                      ..|+||+||||||||++++++++.+....+ .++...+..+..+.-........+....+.+..+.+||+||||+|+++.
T Consensus       108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~  187 (412)
T PRK05342        108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR  187 (412)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence            569999999999999999999987743222 1111111111100000000000011123444567889999999999976


Q ss_pred             H--------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCC---CCCCC------------------
Q psy17703        424 T--------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD---SQWNT------------------  468 (720)
Q Consensus       424 ~--------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~---g~~~~------------------  468 (720)
                      .              .|.+|+++||...+.+...|....-...+.+|+|+|..+   |.|.+                  
T Consensus       188 ~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~  267 (412)
T PRK05342        188 KSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGA  267 (412)
T ss_pred             ccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCcc
Confidence            3              789999999977777765554444346788999999832   33221                  


Q ss_pred             C-c---------ccc--------cccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHH-HHhhcCCcch
Q psy17703        469 S-K---------TII--------DNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAY-AQEHLSPTLS  529 (720)
Q Consensus       469 ~-~---------~~~--------~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~-ar~~~~p~ls  529 (720)
                      . +         .+.        ..+.|.|+|+.|+|.++.+.+...++..+.+.... ..++++|-.. +...+...++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~-~~l~~q~~~~l~~~~i~L~~t  346 (412)
T PRK05342        268 EVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPK-NALVKQYQKLFEMDGVELEFT  346 (412)
T ss_pred             ccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHH-HHHHHHHHHHHHhCCcEEEEC
Confidence            0 0         000        11247999999999999999888887766655322 1344444432 3445778899


Q ss_pred             HHHHHHHHHH
Q psy17703        530 EEASQRLIQT  539 (720)
Q Consensus       530 ~ea~~~l~~~  539 (720)
                      +++.+.|++.
T Consensus       347 ~~al~~Ia~~  356 (412)
T PRK05342        347 DEALEAIAKK  356 (412)
T ss_pred             HHHHHHHHHh
Confidence            9999999864

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=99.41  E-value=6.1e-13  Score=146.23  Aligned_cols=194  Identities=18%  Similarity=0.227  Sum_probs=118.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCc-cccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQ-YTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD  423 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~-~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~  423 (720)
                      ..|+||+||||+|||++++++++.+.... .......+..|..+.-.....+......++.+..+.+||+||||+|++++
T Consensus       116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~  195 (413)
T TIGR00382       116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR  195 (413)
T ss_pred             CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence            46999999999999999999998763211 11111111111100000000011111234555667889999999999987


Q ss_pred             --------------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCC---CCCCCCC-----------------
Q psy17703        424 --------------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC---DSQWNTS-----------------  469 (720)
Q Consensus       424 --------------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~---~g~~~~~-----------------  469 (720)
                                    ..|++|+++||...+.+...|....-..++.+|.|+|..   .|-|.+.                 
T Consensus       196 ~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~  275 (413)
T TIGR00382       196 KSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGA  275 (413)
T ss_pred             hhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccc
Confidence                          589999999974444444333332223578899999982   2322110                 


Q ss_pred             --c-------ccc--------cccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHH-HHHhhcCCcchHH
Q psy17703        470 --K-------TII--------DNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIA-YAQEHLSPTLSEE  531 (720)
Q Consensus       470 --~-------~~~--------~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~-~ar~~~~p~ls~e  531 (720)
                        .       .+.        ..+.|.|+|+.|+|.++.+.+...++..+.+....+ .++++|-. ++.+.+.-.++++
T Consensus       276 ~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n-~l~kq~~~~l~~~gi~L~~t~~  354 (413)
T TIGR00382       276 EVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKN-ALVKQYQALFKMDNVELDFEEE  354 (413)
T ss_pred             cccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHH-HHHHHHHHHhccCCeEEEECHH
Confidence              0       000        122489999999999999988888777666554321 23444432 2334567788999


Q ss_pred             HHHHHHHH
Q psy17703        532 ASQRLIQT  539 (720)
Q Consensus       532 a~~~l~~~  539 (720)
                      +.+.|++.
T Consensus       355 a~~~Ia~~  362 (413)
T TIGR00382       355 ALKAIAKK  362 (413)
T ss_pred             HHHHHHHh
Confidence            99988865

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.40  E-value=7e-12  Score=134.38  Aligned_cols=191  Identities=22%  Similarity=0.260  Sum_probs=124.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT  424 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~  424 (720)
                      -|++|+||||||||++++.+++.+...... .+......+.        ....  +.    .+..++++||||++.++++
T Consensus        31 ~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~--------l~~~--l~----~~~~~~vl~iDEi~~l~~~   96 (305)
T TIGR00635        31 DHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGD--------LAAI--LT----NLEEGDVLFIDEIHRLSPA   96 (305)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchh--------HHHH--HH----hcccCCEEEEehHhhhCHH
Confidence            489999999999999999999876432211 1100000000        0000  00    1234679999999999999


Q ss_pred             HHHHHHHHHHhceEeee-ccCe-----EEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChH
Q psy17703        425 TRSILHEVMEQQTLSIA-KAGI-----ICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSE  498 (720)
Q Consensus       425 ~~~~L~e~mE~~~vsi~-k~g~-----~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~  498 (720)
                      .++.|+.+|++....+- .++.     ...+| .+.+++++|...             .++++++|||.+++.+..++.+
T Consensus        97 ~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~li~~t~~~~-------------~l~~~l~sR~~~~~~l~~l~~~  162 (305)
T TIGR00635        97 VEELLYPAMEDFRLDIVIGKGPSARSVRLDLP-PFTLVGATTRAG-------------MLTSPLRDRFGIILRLEFYTVE  162 (305)
T ss_pred             HHHHhhHHHhhhheeeeeccCccccceeecCC-CeEEEEecCCcc-------------ccCHHHHhhcceEEEeCCCCHH
Confidence            99999999987664321 1111     11223 477777777542             4788999999888888877766


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCC
Q psy17703        499 QFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSET  578 (720)
Q Consensus       499 ~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~  578 (720)
                      +....+.             .........+++++.+.|.+..             ..+||.+..+++.+...|.......
T Consensus       163 e~~~il~-------------~~~~~~~~~~~~~al~~ia~~~-------------~G~pR~~~~ll~~~~~~a~~~~~~~  216 (305)
T TIGR00635       163 ELAEIVS-------------RSAGLLNVEIEPEAALEIARRS-------------RGTPRIANRLLRRVRDFAQVRGQKI  216 (305)
T ss_pred             HHHHHHH-------------HHHHHhCCCcCHHHHHHHHHHh-------------CCCcchHHHHHHHHHHHHHHcCCCC
Confidence            5433332             1112235678899888877431             1235888888887777777666677


Q ss_pred             CCHHhHHHHHHH
Q psy17703        579 VEVQDVDEAWRL  590 (720)
Q Consensus       579 V~~~Dv~~Ai~l  590 (720)
                      ++.+++..++..
T Consensus       217 it~~~v~~~l~~  228 (305)
T TIGR00635       217 INRDIALKALEM  228 (305)
T ss_pred             cCHHHHHHHHHH
Confidence            999999988764

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>KOG0734|consensus

Probab=99.40  E-value=1e-12  Score=142.37  Aligned_cols=263  Identities=23%  Similarity=0.281  Sum_probs=154.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC-CCccccCCcccc--ccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP-RSQYTSGKGSSA--VGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD  423 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p-r~~~~~g~~ss~--~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~  423 (720)
                      -|||+||||||||.|||++|..+. +..|.+|.+...  +|..|..+++-+.     .+-   .-...|+||||+|....
T Consensus       339 GVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~-----aAk---~~APcIIFIDEiDavG~  410 (752)
T KOG0734|consen  339 GVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFA-----AAK---ARAPCIIFIDEIDAVGG  410 (752)
T ss_pred             ceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHH-----HHH---hcCCeEEEEechhhhcc
Confidence            799999999999999999999773 455666665443  4444443333211     000   01257999999998642


Q ss_pred             ----HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeEEEecCCCh
Q psy17703        424 ----TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLIFLLLDPQS  497 (720)
Q Consensus       424 ----~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli~~l~d~~~  497 (720)
                          .++....+.+.|--+..  +|.  .-|..+.||||+|-.+             .|++||++  |||..+.++.|+-
T Consensus       411 kR~~~~~~y~kqTlNQLLvEm--DGF--~qNeGiIvigATNfpe-------------~LD~AL~RPGRFD~~v~Vp~PDv  473 (752)
T KOG0734|consen  411 KRNPSDQHYAKQTLNQLLVEM--DGF--KQNEGIIVIGATNFPE-------------ALDKALTRPGRFDRHVTVPLPDV  473 (752)
T ss_pred             cCCccHHHHHHHHHHHHHHHh--cCc--CcCCceEEEeccCChh-------------hhhHHhcCCCccceeEecCCCCc
Confidence                22222222222211111  222  2356789999999665             58888888  9999999988877


Q ss_pred             HHHHHHHHhhc---------ch------------hHH--------------------HHHHHHHHhhc-------CCcch
Q psy17703        498 EQFDARLARHL---------DI------------TVL--------------------RDYIAYAQEHL-------SPTLS  529 (720)
Q Consensus       498 ~~~d~~la~~i---------~~------------~~l--------------------~~~i~~ar~~~-------~p~ls  529 (720)
                      .-+.+++..|+         |.            ..|                    -+++.+||.++       ...++
T Consensus       474 ~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDrIlMG~ERks~~i~  553 (752)
T KOG0734|consen  474 RGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDRILMGPERKSMVID  553 (752)
T ss_pred             ccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhheeecccccccccC
Confidence            77777776665         00            011                    12333444332       12334


Q ss_pred             HHHHHH---------HHHHHHH--h---------hhcCC-------CCCCcccCHHHHHHHHH------HHHHHHHHcCC
Q psy17703        530 EEASQR---------LIQTYVD--M---------RKLGA-------GRGRISAYPRQLESLIR------LSEAHAKMRYS  576 (720)
Q Consensus       530 ~ea~~~---------l~~~y~~--l---------r~~~~-------~~~~~~~t~R~le~lir------la~A~A~l~~~  576 (720)
                      +++...         |+.+|.+  +         |..+.       ....+.+|.+|+.+.+.      +||.+  +-+.
T Consensus       554 ~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~t~~LPe~D~~~~Tk~q~LA~lDV~MGGRvAEEL--IfG~  631 (752)
T KOG0734|consen  554 EEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGHTSQLPEKDRYSITKAQLLARLDVCMGGRVAEEL--IFGT  631 (752)
T ss_pred             hhhhhhhhhhccCceEEEeecCCCccccceeeccCCccccceeecCccchhhHHHHHHHHHHHHhhcchHHHHH--hccC
Confidence            444322         2222221  0         00000       12235577788877663      44433  4566


Q ss_pred             CCCCH---HhHHHHHHHHHHHHHHhccCCCCCcceeeeeccCCCHHHHHHHHHHHHHHHHHHHH
Q psy17703        577 ETVEV---QDVDEAWRLHREALKQSATDPLSGKIDVSILTTGVSSAARQRQLELTAALKKLVIL  637 (720)
Q Consensus       577 ~~V~~---~Dv~~Ai~l~~~~l~~~~~d~~~g~~d~~~~~~g~~~~~~~~~~~~~~~i~~~~~~  637 (720)
                      +.||.   .|+..|-.+-+.+..+.++...-|..++..-..+.+.+- ..++-+.+.|+.++++
T Consensus       632 D~iTsGAssDl~qAT~lA~~MVt~fGMSd~vG~v~~~~~~~~~s~~~-~t~~lidaEi~~lL~~  694 (752)
T KOG0734|consen  632 DKITSGASSDLDQATKLARRMVTKFGMSDKVGPVTLSAEDNSSSLSP-RTQELIDAEIKRLLRD  694 (752)
T ss_pred             CcccccccchHHHHHHHHHHHHHHcCccccccceeeeccCCCCCCCc-hhHHHHHHHHHHHHHH
Confidence            77876   699999999999999999877777776654333333332 2334566777777776

>PF14551 MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1LTL_E

Probab=99.38  E-value=7.3e-13  Score=122.01  Aligned_cols=97  Identities=26%  Similarity=0.473  Sum_probs=77.9

Q ss_pred             chhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhh--------Ccc-cccccceEEE
Q psy17703        176 IRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFER--------HPA-AVLEHQIQVR  246 (720)
Q Consensus       176 ~~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~--------~~~-~~~~~~~~~~  246 (720)
                      ..|...+++|...+..+|.|||+||..||++||..|+++|.+++++|++|+++++.+.        .+. ......++++
T Consensus        16 ~~Y~~~l~~~~~~~~~~l~Vd~~dL~~f~~~L~~~l~~~P~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   95 (121)
T PF14551_consen   16 PKYMDQLREMIQRNKKSLYVDLDDLREFDPDLAEALIENPYRYLPLFEEALKEVVKELFPSEQQSSFPPELKRRKEIQVR   95 (121)
T ss_dssp             -CCHHHHHHHHHHT-SCEEEEHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHCHHTT----------GCCTTTS--EEE
T ss_pred             hHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCchhhccceeEEEE
Confidence            4567789999999999999999999999999999999999999999999999988652        222 2234689999


Q ss_pred             ecCCccccccccCCCcCCCceEEEee
Q psy17703        247 PFNAKKTRNLRHLNPEDIDQLITING  272 (720)
Q Consensus       247 ~~~~~~~~~~r~l~~~~i~~lv~v~G  272 (720)
                      +.|.+...++|+|++++|||||+|+|
T Consensus        96 ~~~~~~~~~iR~L~s~~igkLV~v~G  121 (121)
T PF14551_consen   96 FYNLPKSTSIRELRSSHIGKLVSVSG  121 (121)
T ss_dssp             EES-S-EE-GGG-SGGGTTSEEEEEE
T ss_pred             EcCCCCCcCcCCCChHHCCCEEEEeC
Confidence            99999999999999999999999998

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=1.4e-12  Score=146.85  Aligned_cols=170  Identities=24%  Similarity=0.333  Sum_probs=105.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCcc--cccee----eecceeee------cCCcee
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPE--TRQMV----LQTGALVL------ADSGVC  413 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~--~~~~~----~~~G~l~l------ad~gI~  413 (720)
                      .=+||+||||+|||+|++++|+.+.|-.+--..|    |+     +|..  -|...    --||.+..      ..+-++
T Consensus       351 pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLG----Gv-----rDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~  421 (782)
T COG0466         351 PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLG----GV-----RDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVF  421 (782)
T ss_pred             cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecC----cc-----ccHHHhccccccccccCChHHHHHHHHhCCcCCeE
Confidence            4589999999999999999999998764432111    11     1210  01110    12444432      245689


Q ss_pred             eccccccCChHH----HHHHHHHHH-hceEeeeccCeEEeec-CceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703        414 CIDEFDKMSDTT----RSILHEVME-QQTLSIAKAGIICQLN-ARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD  487 (720)
Q Consensus       414 ~IDEidkm~~~~----~~~L~e~mE-~~~vsi~k~g~~~~l~-a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd  487 (720)
                      +|||+|||+.+.    -++|+|+++ +|..++...-....+. +++.+|||||...             .+|.||++|..
T Consensus       422 LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~-------------tIP~PLlDRME  488 (782)
T COG0466         422 LLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD-------------TIPAPLLDRME  488 (782)
T ss_pred             EeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc-------------cCChHHhccee
Confidence            999999998765    469999995 3444443333333332 5789999999654             59999999998


Q ss_pred             eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Q psy17703        488 LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYV  541 (720)
Q Consensus       488 li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~  541 (720)
                       ++.+.....++..++-.+|+-...+++   ..-..-.-.++++|...|+++|.
T Consensus       489 -iI~lsgYt~~EKl~IAk~~LiPk~~~~---~gL~~~el~i~d~ai~~iI~~YT  538 (782)
T COG0466         489 -VIRLSGYTEDEKLEIAKRHLIPKQLKE---HGLKKGELTITDEAIKDIIRYYT  538 (782)
T ss_pred             -eeeecCCChHHHHHHHHHhcchHHHHH---cCCCccceeecHHHHHHHHHHHh
Confidence             455554444443333334442222221   00011234689999999999997

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=99.36  E-value=4.2e-12  Score=137.74  Aligned_cols=204  Identities=17%  Similarity=0.144  Sum_probs=136.1

Q ss_pred             cCCCCccEEEEcCCCCHHHHHHHHHHhhCCCC---cc---ccCCcccc-ccc-cceeecCccccceeeecceeeecCCce
Q psy17703        341 ETPAEINILLCGDPGTSKSQLLSYVYDLVPRS---QY---TSGKGSSA-VGL-TAYITKDPETRQMVLQTGALVLADSGV  412 (720)
Q Consensus       341 E~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~---~~---~~g~~ss~-~gl-ta~~~~~~~~~~~~~~~G~l~lad~gI  412 (720)
                      -+|.+.|||+.|++||||+.+|+.++....+.   .+   .++.-+.. ..+ .-+..+...+|...-++|.+..|+||+
T Consensus        97 ~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGt  176 (403)
T COG1221          97 YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGT  176 (403)
T ss_pred             hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCE
Confidence            45688999999999999999999999876652   11   11110000 000 111223335666677899999999999


Q ss_pred             eeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc-cceeEEE
Q psy17703        413 CCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS-RFDLIFL  491 (720)
Q Consensus       413 ~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls-RFdli~~  491 (720)
                      +|+||+..|++..|..|+.+||++.+.-  -|.....+.++.+++|+|-...+         .+.-...|++ |+.+++.
T Consensus       177 LfLDEI~~LP~~~Q~kLl~~le~g~~~r--vG~~~~~~~dVRli~AT~~~l~~---------~~~~g~dl~~rl~~~~I~  245 (403)
T COG1221         177 LFLDEIHRLPPEGQEKLLRVLEEGEYRR--VGGSQPRPVDVRLICATTEDLEE---------AVLAGADLTRRLNILTIT  245 (403)
T ss_pred             EehhhhhhCCHhHHHHHHHHHHcCceEe--cCCCCCcCCCceeeeccccCHHH---------HHHhhcchhhhhcCceec
Confidence            9999999999999999999999998863  66688889999999999854321         1111135555 6666666


Q ss_pred             ecCCChHHHHHHHHhhcchhHHHHHH-HHHHhhc--CCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703        492 LLDPQSEQFDARLARHLDITVLRDYI-AYAQEHL--SPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE  568 (720)
Q Consensus       492 l~d~~~~~~d~~la~~i~~~~l~~~i-~~ar~~~--~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~  568 (720)
                      +++......|..       .++.-|+ .++++.-  .+..++++...+..|            +++.+.|+|+.++..+-
T Consensus       246 LPpLrER~~Di~-------~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y------------~~pGNirELkN~Ve~~~  306 (403)
T COG1221         246 LPPLRERKEDIL-------LLAEHFLKSEARRLGLPLSVDSPEALRALLAY------------DWPGNIRELKNLVERAV  306 (403)
T ss_pred             CCChhhchhhHH-------HHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC------------CCCCcHHHHHHHHHHHH
Confidence            665544322211       1112222 2344322  233456777777654            57888999999999988


Q ss_pred             HHHHHc
Q psy17703        569 AHAKMR  574 (720)
Q Consensus       569 A~A~l~  574 (720)
                      +.+...
T Consensus       307 ~~~~~~  312 (403)
T COG1221         307 AQASGE  312 (403)
T ss_pred             HHhccc
Confidence            887655

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.36  E-value=7.7e-12  Score=131.11  Aligned_cols=189  Identities=19%  Similarity=0.203  Sum_probs=111.4

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCC-ccccCCc--cccccccceeecCccccceee-ecceeeecCCceeeccccc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRS-QYTSGKG--SSAVGLTAYITKDPETRQMVL-QTGALVLADSGVCCIDEFD  419 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~-~~~~g~~--ss~~glta~~~~~~~~~~~~~-~~G~l~lad~gI~~IDEid  419 (720)
                      ...|+||+||||||||++|+++++.+... ....+.-  .....+....     .++... -.+.+..+.+||+||||++
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~-----~g~~~~~~~~~~~~a~~~VL~IDE~~  115 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEY-----IGHTAQKTREVIKKALGGVLFIDEAY  115 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhh-----ccchHHHHHHHHHhccCCEEEEechh
Confidence            45799999999999999999999865211 0000000  0000000000     000000 0122334568999999999


Q ss_pred             cCC--------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEE
Q psy17703        420 KMS--------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFL  491 (720)
Q Consensus       420 km~--------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~  491 (720)
                      .+.        .+.+..|+..||+..             .++.++++.+|....        .-..++|+|.+||+..+.
T Consensus       116 ~L~~~~~~~~~~~~i~~Ll~~~e~~~-------------~~~~vila~~~~~~~--------~~~~~~p~L~sRf~~~i~  174 (261)
T TIGR02881       116 SLARGGEKDFGKEAIDTLVKGMEDNR-------------NEFVLILAGYSDEMD--------YFLSLNPGLRSRFPISID  174 (261)
T ss_pred             hhccCCccchHHHHHHHHHHHHhccC-------------CCEEEEecCCcchhH--------HHHhcChHHHhccceEEE
Confidence            876        345677888887542             335666666553311        112478999999998889


Q ss_pred             ecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHH
Q psy17703        492 LLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHA  571 (720)
Q Consensus       492 l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A  571 (720)
                      +.++..++....+.         .++   + .....+++++.+.+.+++..++...   ..-..+.|.+..++..|..+.
T Consensus       175 f~~~~~~el~~Il~---------~~~---~-~~~~~l~~~a~~~l~~~~~~~~~~~---~~~~gn~R~~~n~~e~a~~~~  238 (261)
T TIGR02881       175 FPDYTVEELMEIAE---------RMV---K-EREYKLTEEAKWKLREHLYKVDQLS---SREFSNARYVRNIIEKAIRRQ  238 (261)
T ss_pred             ECCCCHHHHHHHHH---------HHH---H-HcCCccCHHHHHHHHHHHHHHHhcc---CCCCchHHHHHHHHHHHHHHH
Confidence            98877655433322         222   2 2345689999998888776655311   122345688888887766555


Q ss_pred             HHc
Q psy17703        572 KMR  574 (720)
Q Consensus       572 ~l~  574 (720)
                      ..+
T Consensus       239 ~~r  241 (261)
T TIGR02881       239 AVR  241 (261)
T ss_pred             HHH
Confidence            433

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=99.34  E-value=9.2e-12  Score=134.52  Aligned_cols=200  Identities=20%  Similarity=0.218  Sum_probs=130.3

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCC--ccc--cCCccccccccc---eeecCccccceeeecceeeecCCceeecc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRS--QYT--SGKGSSAVGLTA---YITKDPETRQMVLQTGALVLADSGVCCID  416 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~--~~~--~g~~ss~~glta---~~~~~~~~~~~~~~~G~l~lad~gI~~ID  416 (720)
                      .+.||||.|+|||||+.+|++++...++.  .+.  .....+..-+..   +..+...++.....+|.+..+++|++|||
T Consensus        28 ~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~  107 (326)
T PRK11608         28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLD  107 (326)
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhccCCCeEEeC
Confidence            57899999999999999999999887642  111  111110000000   00011112222234678889999999999


Q ss_pred             ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce-eEEEecCC
Q psy17703        417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD-LIFLLLDP  495 (720)
Q Consensus       417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd-li~~l~d~  495 (720)
                      |++.|+...|..|+.+++.+.+.-  .|.....+.++.+|+++|....      .+...-.+.+.|+.||. ..+.+++.
T Consensus       108 ~i~~L~~~~Q~~L~~~l~~~~~~~--~g~~~~~~~~~RiI~~s~~~l~------~l~~~g~f~~dL~~~l~~~~i~lPpL  179 (326)
T PRK11608        108 ELATAPMLVQEKLLRVIEYGELER--VGGSQPLQVNVRLVCATNADLP------AMVAEGKFRADLLDRLAFDVVQLPPL  179 (326)
T ss_pred             ChhhCCHHHHHHHHHHHhcCcEEe--CCCCceeeccEEEEEeCchhHH------HHHHcCCchHHHHHhcCCCEEECCCh
Confidence            999999999999999999887543  5656677888999999986431      11223358889999996 45555554


Q ss_pred             ChHHHHHHHHhhcchhHHHHHHHHH-Hhh---cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703        496 QSEQFDARLARHLDITVLRDYIAYA-QEH---LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH  570 (720)
Q Consensus       496 ~~~~~d~~la~~i~~~~l~~~i~~a-r~~---~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~  570 (720)
                      .+...|  |.     .++..|+... ++.   +.+.+++++.+.|..|            +||.+.|+|+.+++-+-..
T Consensus       180 ReR~eD--I~-----~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y------------~WPGNvrEL~~vl~~a~~~  239 (326)
T PRK11608        180 RERQSD--IM-----LMAEHFAIQMCRELGLPLFPGFTERARETLLNY------------RWPGNIRELKNVVERSVYR  239 (326)
T ss_pred             hhhhhh--HH-----HHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhC------------CCCcHHHHHHHHHHHHHHh
Confidence            333222  11     1233334332 221   1257999999988755            5888999999988765443

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=99.34  E-value=5.1e-12  Score=133.82  Aligned_cols=189  Identities=19%  Similarity=0.127  Sum_probs=114.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccce-eeecceeeecCCceeeccccccC--
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQM-VLQTGALVLADSGVCCIDEFDKM--  421 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~-~~~~G~l~lad~gI~~IDEidkm--  421 (720)
                      ..|+||+||||||||++|+++++.+...-+....  ..+..+....-....++. ....+.+..+.+|++||||++.+  
T Consensus        58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~--~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~  135 (284)
T TIGR02880        58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKG--HLVSVTRDDLVGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYR  135 (284)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccc--eEEEecHHHHhHhhcccchHHHHHHHHHccCcEEEEechhhhcc
Confidence            5799999999999999998888866321110000  000000000000000000 00112344467899999999977  


Q ss_pred             -------ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecC
Q psy17703        422 -------SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLD  494 (720)
Q Consensus       422 -------~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d  494 (720)
                             +.+.++.|++.|+++.             .++.+|+|+++..        ...-+.+.|+|.+||+..+.+++
T Consensus       136 ~~~~~~~~~~~~~~Ll~~le~~~-------------~~~~vI~a~~~~~--------~~~~~~~np~L~sR~~~~i~fp~  194 (284)
T TIGR02880       136 PDNERDYGQEAIEILLQVMENQR-------------DDLVVILAGYKDR--------MDSFFESNPGFSSRVAHHVDFPD  194 (284)
T ss_pred             CCCccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHH--------HHHHHhhCHHHHhhCCcEEEeCC
Confidence                   3456788999998642             3567888876531        11123568999999999999998


Q ss_pred             CChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHc
Q psy17703        495 PQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMR  574 (720)
Q Consensus       495 ~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~  574 (720)
                      +..++....+.         .++.   + ....+++++.+.+.++....+     ..+++.+.|.+..++.-+......|
T Consensus       195 l~~edl~~I~~---------~~l~---~-~~~~l~~~a~~~L~~~l~~~~-----~~~~~GN~R~lrn~ve~~~~~~~~r  256 (284)
T TIGR02880       195 YSEAELLVIAG---------LMLK---E-QQYRFSAEAEEAFADYIALRR-----TQPHFANARSIRNAIDRARLRQANR  256 (284)
T ss_pred             cCHHHHHHHHH---------HHHH---H-hccccCHHHHHHHHHHHHHhC-----CCCCCChHHHHHHHHHHHHHHHHHH
Confidence            87655433322         2222   2 346788888888877554332     2357788899999887665554444

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>CHL00181 cbbX CbbX; Provisional

Probab=99.34  E-value=5.5e-12  Score=133.59  Aligned_cols=181  Identities=19%  Similarity=0.174  Sum_probs=109.7

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCC--ccccccccceeecCcccccee-eecceeeecCCceeeccccc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGK--GSSAVGLTAYITKDPETRQMV-LQTGALVLADSGVCCIDEFD  419 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~--~ss~~glta~~~~~~~~~~~~-~~~G~l~lad~gI~~IDEid  419 (720)
                      ...|+||+||||||||++|+++++.+...-+. .+.  ..+...+....     .++.. ...+.+..+.+||+||||++
T Consensus        58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~-----~g~~~~~~~~~l~~a~ggVLfIDE~~  132 (287)
T CHL00181         58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQY-----IGHTAPKTKEVLKKAMGGVLFIDEAY  132 (287)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHH-----hccchHHHHHHHHHccCCEEEEEccc
Confidence            35799999999999999999998865321110 110  00000010000     01000 00123344678999999999


Q ss_pred             cC---------ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703        420 KM---------SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF  490 (720)
Q Consensus       420 km---------~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~  490 (720)
                      .+         ..+.+..|+..||...             .++.||+|+++..        +..-..++|+|.+||+.++
T Consensus       133 ~l~~~~~~~~~~~e~~~~L~~~me~~~-------------~~~~vI~ag~~~~--------~~~~~~~np~L~sR~~~~i  191 (287)
T CHL00181        133 YLYKPDNERDYGSEAIEILLQVMENQR-------------DDLVVIFAGYKDR--------MDKFYESNPGLSSRIANHV  191 (287)
T ss_pred             hhccCCCccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHH--------HHHHHhcCHHHHHhCCceE
Confidence            86         4567788999998642             3466777766431        1122356799999999999


Q ss_pred             EecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703        491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE  568 (720)
Q Consensus       491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~  568 (720)
                      .+.+++.++....+.         .++   ++ ....+++++.+.+.+++.+.+.     .+...+.|.+..++.-+.
T Consensus       192 ~F~~~t~~el~~I~~---------~~l---~~-~~~~l~~~~~~~L~~~i~~~~~-----~~~~GNaR~vrn~ve~~~  251 (287)
T CHL00181        192 DFPDYTPEELLQIAK---------IML---EE-QQYQLTPEAEKALLDYIKKRME-----QPLFANARSVRNALDRAR  251 (287)
T ss_pred             EcCCcCHHHHHHHHH---------HHH---HH-hcCCCChhHHHHHHHHHHHhCC-----CCCCccHHHHHHHHHHHH
Confidence            999998766543333         222   21 3556788888777776654332     234455688888776433

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=99.32  E-value=2.2e-11  Score=138.57  Aligned_cols=222  Identities=15%  Similarity=0.126  Sum_probs=135.2

Q ss_pred             CCCccEEEEcCCCCHHHHHHHHHHhh--------CCCC--ccc--cCCcccccccc---ceeecCccccce-eeecceee
Q psy17703        343 PAEINILLCGDPGTSKSQLLSYVYDL--------VPRS--QYT--SGKGSSAVGLT---AYITKDPETRQM-VLQTGALV  406 (720)
Q Consensus       343 pg~i~vLL~G~PGtGKS~ll~~va~~--------~pr~--~~~--~g~~ss~~glt---a~~~~~~~~~~~-~~~~G~l~  406 (720)
                      +.+.+|||.|+|||||+.+|++++..        .++.  .+.  ........-+.   .+......++.. .-++|.+.
T Consensus       240 ~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e  319 (538)
T PRK15424        240 RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE  319 (538)
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchh
Confidence            36789999999999999999999987        4432  111  00000000000   000011112221 13568888


Q ss_pred             ecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703        407 LADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF  486 (720)
Q Consensus       407 lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF  486 (720)
                      .|++|.+||||++.|+...|..|+.+++++.+.-  .|.....+.++.+|+|+|....      .....-.+.+.|+.|+
T Consensus       320 ~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r--~G~~~~~~~dvRiIaat~~~L~------~~v~~g~Fr~dL~yrL  391 (538)
T PRK15424        320 IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR--VGGHQPVPVDVRVISATHCDLE------EDVRQGRFRRDLFYRL  391 (538)
T ss_pred             ccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEe--cCCCceeccceEEEEecCCCHH------HHHhcccchHHHHHHh
Confidence            9999999999999999999999999999988764  6777788899999999985431      1222335777888898


Q ss_pred             ee-EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703        487 DL-IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR  565 (720)
Q Consensus       487 dl-i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir  565 (720)
                      .. .+.+++.  .++.+-|.     .+.+.|+..........+++++...+.+....|..     -+||.+.|+|+.+++
T Consensus       392 ~~~~I~lPPL--ReR~eDI~-----~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~-----y~WPGNvREL~nvie  459 (538)
T PRK15424        392 SILRLQLPPL--RERVADIL-----PLAESFLKQSLAALSAPFSAALRQGLQQCETLLLH-----YDWPGNVRELRNLME  459 (538)
T ss_pred             cCCeecCCCh--hhchhHHH-----HHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHh-----CCCCchHHHHHHHHH
Confidence            73 3334333  22221121     23344444432233445888877655544433333     268999999999887


Q ss_pred             HHHHHHHHcCCCCCCHHhH
Q psy17703        566 LSEAHAKMRYSETVEVQDV  584 (720)
Q Consensus       566 la~A~A~l~~~~~V~~~Dv  584 (720)
                      -+-..+.-.....++.+++
T Consensus       460 r~~i~~~~~~~~~i~~~~l  478 (538)
T PRK15424        460 RLALFLSVEPTPDLTPQFL  478 (538)
T ss_pred             HHHHhcCCCCcCccCHHHh
Confidence            5544322111234555554

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=8.8e-12  Score=130.46  Aligned_cols=186  Identities=23%  Similarity=0.265  Sum_probs=116.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCc-cccCCc--cccccccceeecCccccceeeecceeeec---CCceeeccccc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQ-YTSGKG--SSAVGLTAYITKDPETRQMVLQTGALVLA---DSGVCCIDEFD  419 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~-~~~g~~--ss~~glta~~~~~~~~~~~~~~~G~l~la---d~gI~~IDEid  419 (720)
                      --|||+||||||||.||+++|+...... ...|.+  ...+|..+-.+++           .+.+|   ...|+||||||
T Consensus       186 KGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRe-----------lF~lArekaPsIIFiDEID  254 (406)
T COG1222         186 KGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRE-----------LFELAREKAPSIIFIDEID  254 (406)
T ss_pred             CceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHH-----------HHHHHhhcCCeEEEEechh
Confidence            3799999999999999999998654211 111110  0112222222221           11222   24799999999


Q ss_pred             cCC-----------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cc
Q psy17703        420 KMS-----------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RF  486 (720)
Q Consensus       420 km~-----------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RF  486 (720)
                      .+.           .+.|-.|+|.+.|-      +|...  ..++-||+|+|...             .|+||||+  ||
T Consensus       255 AIg~kR~d~~t~gDrEVQRTmleLL~ql------DGFD~--~~nvKVI~ATNR~D-------------~LDPALLRPGR~  313 (406)
T COG1222         255 AIGAKRFDSGTSGDREVQRTMLELLNQL------DGFDP--RGNVKVIMATNRPD-------------ILDPALLRPGRF  313 (406)
T ss_pred             hhhcccccCCCCchHHHHHHHHHHHHhc------cCCCC--CCCeEEEEecCCcc-------------ccChhhcCCCcc
Confidence            863           34577788887653      23221  35688999999765             58999999  99


Q ss_pred             eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703        487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL  566 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl  566 (720)
                      |-.+.++.|..+.+.+++.-|-           .+-++.+.+.-+.   |+    .+      ..+  .|--++.++..-
T Consensus       314 DRkIEfplPd~~gR~~Il~IHt-----------rkM~l~~dvd~e~---la----~~------~~g--~sGAdlkaictE  367 (406)
T COG1222         314 DRKIEFPLPDEEGRAEILKIHT-----------RKMNLADDVDLEL---LA----RL------TEG--FSGADLKAICTE  367 (406)
T ss_pred             cceeecCCCCHHHHHHHHHHHh-----------hhccCccCcCHHH---HH----Hh------cCC--CchHHHHHHHHH
Confidence            9999999887766665555442           0111112111111   11    00      111  223678888888


Q ss_pred             HHHHHHHcCCCCCCHHhHHHHHH
Q psy17703        567 SEAHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       567 a~A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      |--.|--+.|..||.+|..+|++
T Consensus       368 AGm~AiR~~R~~Vt~~DF~~Av~  390 (406)
T COG1222         368 AGMFAIRERRDEVTMEDFLKAVE  390 (406)
T ss_pred             HhHHHHHhccCeecHHHHHHHHH
Confidence            88888888999999999999976

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=99.32  E-value=1.9e-11  Score=139.16  Aligned_cols=224  Identities=18%  Similarity=0.176  Sum_probs=140.4

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCc--cc--cCCcccccccc---ceeecCccccce-eeecceeeecCCceeec
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ--YT--SGKGSSAVGLT---AYITKDPETRQM-VLQTGALVLADSGVCCI  415 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~--~~--~g~~ss~~glt---a~~~~~~~~~~~-~~~~G~l~lad~gI~~I  415 (720)
                      .+.||||.|++||||+.+|++++...++..  +.  ........-+.   .+......++.. .-.+|.+..|++|.+||
T Consensus       234 ~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfL  313 (526)
T TIGR02329       234 SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFL  313 (526)
T ss_pred             CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcCCceEEe
Confidence            678999999999999999999998775521  11  11000000000   000111112211 13567888899999999


Q ss_pred             cccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce-eEEEecC
Q psy17703        416 DEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD-LIFLLLD  494 (720)
Q Consensus       416 DEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd-li~~l~d  494 (720)
                      ||++.|+.+.|..|+++++++.+.-  .|.....+.++.+|+|+|....      .....-.+...|+.|+. +.+.+++
T Consensus       314 deI~~Lp~~~Q~~Ll~~L~~~~~~r--~g~~~~~~~dvRiIaat~~~l~------~~v~~g~fr~dL~~rL~~~~I~lPP  385 (526)
T TIGR02329       314 DEIGEMPLPLQTRLLRVLEEREVVR--VGGTEPVPVDVRVVAATHCALT------TAVQQGRFRRDLFYRLSILRIALPP  385 (526)
T ss_pred             cChHhCCHHHHHHHHHHHhcCcEEe--cCCCceeeecceEEeccCCCHH------HHhhhcchhHHHHHhcCCcEEeCCC
Confidence            9999999999999999999887653  5666677889999999985531      11223357788888987 4455554


Q ss_pred             CChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHc
Q psy17703        495 PQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMR  574 (720)
Q Consensus       495 ~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~  574 (720)
                      ..+...|  |.     .+.+.|+..........+++++.+.+...+-.|..     -+||.+.|+|+.+++-+-..+...
T Consensus       386 LReR~eD--I~-----~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~-----y~WPGNvrEL~nvier~~i~~~~~  453 (526)
T TIGR02329       386 LRERPGD--IL-----PLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQR-----YPWPGNVRELRNLVERLALELSAM  453 (526)
T ss_pred             chhchhH--HH-----HHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHh-----CCCCchHHHHHHHHHHHHHhcccC
Confidence            4332222  11     23344444433333445888888875444333332     268999999999887655443222


Q ss_pred             CCCCCCHHhHHHH
Q psy17703        575 YSETVEVQDVDEA  587 (720)
Q Consensus       575 ~~~~V~~~Dv~~A  587 (720)
                      ....++.+|+...
T Consensus       454 ~~~~I~~~~l~~~  466 (526)
T TIGR02329       454 PAGALTPDVLRAL  466 (526)
T ss_pred             CCCccCHHHhhhh
Confidence            2356788776543

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.31  E-value=4.7e-12  Score=126.75  Aligned_cols=188  Identities=22%  Similarity=0.275  Sum_probs=113.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCc--cccceeeecceeeecCCceeeccccccCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDP--ETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~--~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      .-|||++||||||||++|+++++.+.-..+ ..+....+|..   +.|.  ..++..-++.   .+...|+||||+|.+.
T Consensus       151 PknVLFyGppGTGKTm~Akalane~kvp~l-~vkat~liGeh---VGdgar~Ihely~rA~---~~aPcivFiDE~DAia  223 (368)
T COG1223         151 PKNVLFYGPPGTGKTMMAKALANEAKVPLL-LVKATELIGEH---VGDGARRIHELYERAR---KAAPCIVFIDELDAIA  223 (368)
T ss_pred             cceeEEECCCCccHHHHHHHHhcccCCceE-EechHHHHHHH---hhhHHHHHHHHHHHHH---hcCCeEEEehhhhhhh
Confidence            469999999999999999999986632221 11222222211   1111  0011111111   2346899999999875


Q ss_pred             hH------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703        423 DT------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF  490 (720)
Q Consensus       423 ~~------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~  490 (720)
                      -+            ..++|+.-|+         |+.  -+-.+..|||+|...             -|++++.|||.--+
T Consensus       224 LdRryQelRGDVsEiVNALLTelD---------gi~--eneGVvtIaaTN~p~-------------~LD~aiRsRFEeEI  279 (368)
T COG1223         224 LDRRYQELRGDVSEIVNALLTELD---------GIK--ENEGVVTIAATNRPE-------------LLDPAIRSRFEEEI  279 (368)
T ss_pred             hhhhHHHhcccHHHHHHHHHHhcc---------Ccc--cCCceEEEeecCChh-------------hcCHHHHhhhhhee
Confidence            43            2346665553         322  244567788888554             58999999999888


Q ss_pred             EecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHH-HHHHHHHHH
Q psy17703        491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQL-ESLIRLSEA  569 (720)
Q Consensus       491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~l-e~lirla~A  569 (720)
                      .+.-|.+++....+..            |++..--| +... .+.+.    . +.     .++  |-|.+ +.+++-|--
T Consensus       280 EF~LP~~eEr~~ile~------------y~k~~Plp-v~~~-~~~~~----~-~t-----~g~--SgRdikekvlK~aLh  333 (368)
T COG1223         280 EFKLPNDEERLEILEY------------YAKKFPLP-VDAD-LRYLA----A-KT-----KGM--SGRDIKEKVLKTALH  333 (368)
T ss_pred             eeeCCChHHHHHHHHH------------HHHhCCCc-cccC-HHHHH----H-Hh-----CCC--CchhHHHHHHHHHHH
Confidence            8888888876555442            33332111 1111 11111    1 11     112  22655 578888888


Q ss_pred             HHHHcCCCCCCHHhHHHHHH
Q psy17703        570 HAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       570 ~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      .|-.++++.|+.+|++.|+.
T Consensus       334 ~Ai~ed~e~v~~edie~al~  353 (368)
T COG1223         334 RAIAEDREKVEREDIEKALK  353 (368)
T ss_pred             HHHHhchhhhhHHHHHHHHH
Confidence            88899999999999999965

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.31  E-value=1.2e-11  Score=131.56  Aligned_cols=166  Identities=25%  Similarity=0.310  Sum_probs=104.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCccccccccceeecCccccceeeecceee-ecCCceeeccccccCCh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGSSAVGLTAYITKDPETRQMVLQTGALV-LADSGVCCIDEFDKMSD  423 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~ss~~glta~~~~~~~~~~~~~~~G~l~-lad~gI~~IDEidkm~~  423 (720)
                      .+++|+||||||||+|++.++......... +...+....+          ++..-++-... ...+-|+||||++++++
T Consensus        49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdl----------r~i~e~a~~~~~~gr~tiLflDEIHRfnK  118 (436)
T COG2256          49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDL----------REIIEEARKNRLLGRRTILFLDEIHRFNK  118 (436)
T ss_pred             ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHH----------HHHHHHHHHHHhcCCceEEEEehhhhcCh
Confidence            589999999999999999999876543222 1111111111          11111110111 11245899999999999


Q ss_pred             HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecc--cCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHH
Q psy17703        424 TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAA--NPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFD  501 (720)
Q Consensus       424 ~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaa--Np~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d  501 (720)
                      ..|++|+..||.+++.+               |||+  ||.+             .+.++|+||.- +|.+.+...++..
T Consensus       119 ~QQD~lLp~vE~G~iil---------------IGATTENPsF-------------~ln~ALlSR~~-vf~lk~L~~~di~  169 (436)
T COG2256         119 AQQDALLPHVENGTIIL---------------IGATTENPSF-------------ELNPALLSRAR-VFELKPLSSEDIK  169 (436)
T ss_pred             hhhhhhhhhhcCCeEEE---------------EeccCCCCCe-------------eecHHHhhhhh-eeeeecCCHHHHH
Confidence            99999999999998764               5555  6554             68999999995 8999988888776


Q ss_pred             HHHHhhcchhHHHHHHHHHHh--hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHH
Q psy17703        502 ARLARHLDITVLRDYIAYAQE--HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHA  571 (720)
Q Consensus       502 ~~la~~i~~~~l~~~i~~ar~--~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A  571 (720)
                      ..+.+-+        ...-+.  ...+.+++++.+.++..-    .         ...|....++.++.-.+
T Consensus       170 ~~l~ra~--------~~~~rgl~~~~~~i~~~a~~~l~~~s----~---------GD~R~aLN~LE~~~~~~  220 (436)
T COG2256         170 KLLKRAL--------LDEERGLGGQIIVLDEEALDYLVRLS----N---------GDARRALNLLELAALSA  220 (436)
T ss_pred             HHHHHHH--------hhhhcCCCcccccCCHHHHHHHHHhc----C---------chHHHHHHHHHHHHHhc
Confidence            5555311        000110  113457788888776431    1         12366666666665444

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=99.29  E-value=3.1e-11  Score=138.26  Aligned_cols=202  Identities=19%  Similarity=0.231  Sum_probs=133.0

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCc----cccCCccccc--c-ccceeecCccccceeeecceeeecCCceeecc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ----YTSGKGSSAV--G-LTAYITKDPETRQMVLQTGALVLADSGVCCID  416 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~----~~~g~~ss~~--g-lta~~~~~~~~~~~~~~~G~l~lad~gI~~ID  416 (720)
                      .+.||||+|++||||+.++++++...++..    ..........  . ...+..+...++...-..|.+..|++|++|||
T Consensus       209 ~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ld  288 (509)
T PRK05022        209 SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLD  288 (509)
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhcCCCEEEec
Confidence            678999999999999999999999887531    1111111000  0 00001111122222335677889999999999


Q ss_pred             ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE-EEecCC
Q psy17703        417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI-FLLLDP  495 (720)
Q Consensus       417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli-~~l~d~  495 (720)
                      |++.|+.+.|..|+.+++++.+.  +.|.....+.++.+|+|+|....      .....-.+.+.|+.|+... +.+++.
T Consensus       289 eI~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~RiI~~t~~~l~------~~~~~~~f~~dL~~rl~~~~i~lPpL  360 (509)
T PRK05022        289 EIGELPLALQAKLLRVLQYGEIQ--RVGSDRSLRVDVRVIAATNRDLR------EEVRAGRFRADLYHRLSVFPLSVPPL  360 (509)
T ss_pred             ChhhCCHHHHHHHHHHHhcCCEe--eCCCCcceecceEEEEecCCCHH------HHHHcCCccHHHHhcccccEeeCCCc
Confidence            99999999999999999988764  35656677789999999986431      1222335888999999743 444443


Q ss_pred             ChHHHHHHHHhhcchhHHHHHHHHHHhh---cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703        496 QSEQFDARLARHLDITVLRDYIAYAQEH---LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK  572 (720)
Q Consensus       496 ~~~~~d~~la~~i~~~~l~~~i~~ar~~---~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~  572 (720)
                      .+...|  |.     .+.+.|+......   -.+.+++++.+.|..|            +||.+.|+|+.+++-+-..|.
T Consensus       361 reR~eD--I~-----~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y------------~WPGNvrEL~~~i~ra~~~~~  421 (509)
T PRK05022        361 RERGDD--VL-----LLAGYFLEQNRARLGLRSLRLSPAAQAALLAY------------DWPGNVRELEHVISRAALLAR  421 (509)
T ss_pred             hhchhh--HH-----HHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC------------CCCCcHHHHHHHHHHHHHhcC
Confidence            332222  11     1233344333222   2468999999998755            688999999999987766554

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=99.29  E-value=2e-11  Score=145.12  Aligned_cols=214  Identities=20%  Similarity=0.255  Sum_probs=122.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCc--cccccccceeecCccccceeeecceee------ecCCceeeccc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKG--SSAVGLTAYITKDPETRQMVLQTGALV------LADSGVCCIDE  417 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~--ss~~glta~~~~~~~~~~~~~~~G~l~------lad~gI~~IDE  417 (720)
                      -.++|+||||+|||++++.+++.+.+..+....+  .....+.+.  +....+   -.+|.+.      ...+.+++|||
T Consensus       350 ~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~--~~~~~g---~~~G~~~~~l~~~~~~~~villDE  424 (784)
T PRK10787        350 PILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH--RRTYIG---SMPGKLIQKMAKVGVKNPLFLLDE  424 (784)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc--hhccCC---CCCcHHHHHHHhcCCCCCEEEEEC
Confidence            3699999999999999999999887543221110  000000000  000000   1123221      12356999999


Q ss_pred             cccCChHH----HHHHHHHHHh-ceEeeeccCeEEeec-CceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEE
Q psy17703        418 FDKMSDTT----RSILHEVMEQ-QTLSIAKAGIICQLN-ARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFL  491 (720)
Q Consensus       418 idkm~~~~----~~~L~e~mE~-~~vsi~k~g~~~~l~-a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~  491 (720)
                      +|+++.+.    .++|+++|+. +..++...-....+. .++.+|||+|..              .+|+||++||. ++.
T Consensus       425 idk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~--------------~i~~aLl~R~~-ii~  489 (784)
T PRK10787        425 IDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM--------------NIPAPLLDRME-VIR  489 (784)
T ss_pred             hhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC--------------CCCHHHhccee-eee
Confidence            99999875    4899999985 444443322222222 578899999843              39999999997 567


Q ss_pred             ecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHH
Q psy17703        492 LLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHA  571 (720)
Q Consensus       492 l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A  571 (720)
                      +.....++......+|+....+++.   ........+++++.+.+++.|.  +..+.     +---|.++.++|-.-+..
T Consensus       490 ~~~~t~eek~~Ia~~~L~~k~~~~~---~l~~~~l~i~~~ai~~ii~~yt--~e~Ga-----R~LeR~I~~i~r~~l~~~  559 (784)
T PRK10787        490 LSGYTEDEKLNIAKRHLLPKQIERN---ALKKGELTVDDSAIIGIIRYYT--REAGV-----RSLEREISKLCRKAVKQL  559 (784)
T ss_pred             cCCCCHHHHHHHHHHhhhHHHHHHh---CCCCCeEEECHHHHHHHHHhCC--cccCC-----cHHHHHHHHHHHHHHHHH
Confidence            7777766666555555433332221   1112356789999999998764  32221     000144444444222221


Q ss_pred             HHcCC---CCCCHHhHHHHHH
Q psy17703        572 KMRYS---ETVEVQDVDEAWR  589 (720)
Q Consensus       572 ~l~~~---~~V~~~Dv~~Ai~  589 (720)
                      -+...   -.|+.+++.+.+.
T Consensus       560 ~~~~~~~~v~v~~~~~~~~lg  580 (784)
T PRK10787        560 LLDKSLKHIEINGDNLHDYLG  580 (784)
T ss_pred             HhcCCCceeeecHHHHHHHhC
Confidence            12211   2577788777654

>TIGR01817 nifA Nif-specific regulatory protein

Probab=99.28  E-value=2.2e-11  Score=140.44  Aligned_cols=212  Identities=19%  Similarity=0.242  Sum_probs=137.0

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCC--cc--ccCCccccccccc---eeecCccccceeeecceeeecCCceeecc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRS--QY--TSGKGSSAVGLTA---YITKDPETRQMVLQTGALVLADSGVCCID  416 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~--~~--~~g~~ss~~glta---~~~~~~~~~~~~~~~G~l~lad~gI~~ID  416 (720)
                      .+.+|||.|++||||+.+|++++..+++.  .+  ......+...+..   +..+...++.....+|.+..+++|++|||
T Consensus       218 ~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ld  297 (534)
T TIGR01817       218 SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLD  297 (534)
T ss_pred             cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEe
Confidence            57899999999999999999999987642  11  1111111000000   00111122222335677888999999999


Q ss_pred             ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee-EEEecCC
Q psy17703        417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL-IFLLLDP  495 (720)
Q Consensus       417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl-i~~l~d~  495 (720)
                      |++.|+.+.|..|+++++++.+.-  .|.....+.++.+|+|+|.....      ....-.+.+.|+.|+.. .+.+++.
T Consensus       298 ei~~L~~~~Q~~Ll~~l~~~~~~~--~~~~~~~~~~~riI~~s~~~l~~------~~~~~~f~~~L~~rl~~~~i~lPpL  369 (534)
T TIGR01817       298 EIGEISPAFQAKLLRVLQEGEFER--VGGNRTLKVDVRLVAATNRDLEE------AVAKGEFRADLYYRINVVPIFLPPL  369 (534)
T ss_pred             chhhCCHHHHHHHHHHHhcCcEEE--CCCCceEeecEEEEEeCCCCHHH------HHHcCCCCHHHHHHhcCCeeeCCCc
Confidence            999999999999999999887653  45555667789999999854311      22333588899999974 3444444


Q ss_pred             ChHHHHHHHHhhcchhHHHHHHHHHHh--hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHH
Q psy17703        496 QSEQFDARLARHLDITVLRDYIAYAQE--HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKM  573 (720)
Q Consensus       496 ~~~~~d~~la~~i~~~~l~~~i~~ar~--~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l  573 (720)
                      .+...|-  .     .++..|+.....  ...+.+++++.+.|..|            +||.+.|+|+.+++.+-..+  
T Consensus       370 reR~eDi--~-----~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~------------~WPGNvrEL~~v~~~a~~~~--  428 (534)
T TIGR01817       370 RERREDI--P-----LLAEAFLEKFNRENGRPLTITPSAIRVLMSC------------KWPGNVRELENCLERTATLS--  428 (534)
T ss_pred             ccccccH--H-----HHHHHHHHHHHHHcCCCCCCCHHHHHHHHhC------------CCCChHHHHHHHHHHHHHhC--
Confidence            3222111  1     123333333221  12368999999988754            57888999999988664433  


Q ss_pred             cCCCCCCHHhHH
Q psy17703        574 RYSETVEVQDVD  585 (720)
Q Consensus       574 ~~~~~V~~~Dv~  585 (720)
                       ....++.+|+.
T Consensus       429 -~~~~I~~~~l~  439 (534)
T TIGR01817       429 -RSGTITRSDFS  439 (534)
T ss_pred             -CCCcccHHHCc
Confidence             34578888875

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=99.26  E-value=4e-12  Score=124.00  Aligned_cols=136  Identities=19%  Similarity=0.259  Sum_probs=90.1

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCC--ccc--cCCcccccccc---ceeecCccccceeeecceeeecCCceeecc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRS--QYT--SGKGSSAVGLT---AYITKDPETRQMVLQTGALVLADSGVCCID  416 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~--~~~--~g~~ss~~glt---a~~~~~~~~~~~~~~~G~l~lad~gI~~ID  416 (720)
                      .+.||||+|++||||+.+|+++++..+|.  .+.  .....+.-.+.   .+..+...++....++|.+..|++|++|||
T Consensus        21 ~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld  100 (168)
T PF00158_consen   21 SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLD  100 (168)
T ss_dssp             STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEE
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccceEEeec
Confidence            56899999999999999999999988753  111  11111000000   011122223333456799999999999999


Q ss_pred             ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703        417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD  487 (720)
Q Consensus       417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd  487 (720)
                      |++.|+++.|..|+++|+++++..  .|.....+.++.+|+++|...      ....++-.|.+.|+.|+.
T Consensus       101 ~I~~L~~~~Q~~Ll~~l~~~~~~~--~g~~~~~~~~~RiI~st~~~l------~~~v~~g~fr~dLy~rL~  163 (168)
T PF00158_consen  101 EIEDLPPELQAKLLRVLEEGKFTR--LGSDKPVPVDVRIIASTSKDL------EELVEQGRFREDLYYRLN  163 (168)
T ss_dssp             TGGGS-HHHHHHHHHHHHHSEEEC--CTSSSEEE--EEEEEEESS-H------HHHHHTTSS-HHHHHHHT
T ss_pred             chhhhHHHHHHHHHHHHhhchhcc--ccccccccccceEEeecCcCH------HHHHHcCCChHHHHHHhc
Confidence            999999999999999999998764  555567788999999998432      223334467777777765

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PLN03025 replication factor C subunit; Provisional

Probab=99.26  E-value=3.2e-11  Score=130.12  Aligned_cols=181  Identities=19%  Similarity=0.199  Sum_probs=103.7

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCcc----ccCCccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQY----TSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~----~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      .|+||+||||||||++++++++.+....+    .....+...+..  .+++. ...+......+......+++|||+|.|
T Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~--~vr~~-i~~~~~~~~~~~~~~~kviiiDE~d~l  111 (319)
T PLN03025         35 PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGID--VVRNK-IKMFAQKKVTLPPGRHKIVILDEADSM  111 (319)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHH--HHHHH-HHHHHhccccCCCCCeEEEEEechhhc
Confidence            48999999999999999999987632111    111111111100  00000 000000000000123569999999999


Q ss_pred             ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHH
Q psy17703        422 SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFD  501 (720)
Q Consensus       422 ~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d  501 (720)
                      +...|++|+..||..             +..+.++.++|...             .+.++|.||+. ++.+..+++++..
T Consensus       112 t~~aq~aL~~~lE~~-------------~~~t~~il~~n~~~-------------~i~~~L~SRc~-~i~f~~l~~~~l~  164 (319)
T PLN03025        112 TSGAQQALRRTMEIY-------------SNTTRFALACNTSS-------------KIIEPIQSRCA-IVRFSRLSDQEIL  164 (319)
T ss_pred             CHHHHHHHHHHHhcc-------------cCCceEEEEeCCcc-------------ccchhHHHhhh-cccCCCCCHHHHH
Confidence            999999999999842             12244566677432             46789999994 7788877766543


Q ss_pred             HHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCH
Q psy17703        502 ARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEV  581 (720)
Q Consensus       502 ~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~  581 (720)
                      ..+.             ..-+.-.-.+++++.+.++...-             ...|.+...+.   +.+ . +...++.
T Consensus       165 ~~L~-------------~i~~~egi~i~~~~l~~i~~~~~-------------gDlR~aln~Lq---~~~-~-~~~~i~~  213 (319)
T PLN03025        165 GRLM-------------KVVEAEKVPYVPEGLEAIIFTAD-------------GDMRQALNNLQ---ATH-S-GFGFVNQ  213 (319)
T ss_pred             HHHH-------------HHHHHcCCCCCHHHHHHHHHHcC-------------CCHHHHHHHHH---HHH-h-cCCCCCH
Confidence            3322             22222355678888887764321             12355555554   222 1 2457888


Q ss_pred             HhHHHH
Q psy17703        582 QDVDEA  587 (720)
Q Consensus       582 ~Dv~~A  587 (720)
                      +++...
T Consensus       214 ~~v~~~  219 (319)
T PLN03025        214 ENVFKV  219 (319)
T ss_pred             HHHHHH
Confidence            887654

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=99.26  E-value=5.3e-11  Score=140.27  Aligned_cols=211  Identities=14%  Similarity=0.190  Sum_probs=136.0

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCC--cc--ccCCcccc----ccccceeecCccccceeeecceeeecCCceeec
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRS--QY--TSGKGSSA----VGLTAYITKDPETRQMVLQTGALVLADSGVCCI  415 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~--~~--~~g~~ss~----~glta~~~~~~~~~~~~~~~G~l~lad~gI~~I  415 (720)
                      .+.+|||.|+|||||+.+|++++..+++.  .+  ........    ..+.+...    .....-.+|.+..|++|++||
T Consensus       347 ~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~----~~~~~~~~g~~~~a~~GtL~l  422 (638)
T PRK11388        347 SSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDR----TDSENGRLSKFELAHGGTLFL  422 (638)
T ss_pred             cCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCC----cCccCCCCCceeECCCCEEEE
Confidence            57899999999999999999999987642  11  11111100    00101000    011123467888999999999


Q ss_pred             cccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee-EEEecC
Q psy17703        416 DEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL-IFLLLD  494 (720)
Q Consensus       416 DEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl-i~~l~d  494 (720)
                      ||++.|+.+.|..|+++++++.++-  .|.....+.++.+|+|+|....      .....-.+.+.|+.|+.. .+.+++
T Consensus       423 dei~~l~~~~Q~~Ll~~l~~~~~~~--~~~~~~~~~~~riI~~t~~~l~------~~~~~~~f~~dL~~~l~~~~i~lPp  494 (638)
T PRK11388        423 EKVEYLSPELQSALLQVLKTGVITR--LDSRRLIPVDVRVIATTTADLA------MLVEQNRFSRQLYYALHAFEITIPP  494 (638)
T ss_pred             cChhhCCHHHHHHHHHHHhcCcEEe--CCCCceEEeeEEEEEeccCCHH------HHHhcCCChHHHhhhhceeEEeCCC
Confidence            9999999999999999999887753  5666667788999999996431      112223577788888873 333443


Q ss_pred             CChHHHHHHHHhhcchhHHHHHHHHHH-h-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703        495 PQSEQFDARLARHLDITVLRDYIAYAQ-E-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK  572 (720)
Q Consensus       495 ~~~~~~d~~la~~i~~~~l~~~i~~ar-~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~  572 (720)
                      ..+  +..-|.     .++..|+.... + ...+.+++++.+.|..|            +||.+.|+|+.+++-+-..+ 
T Consensus       495 Lre--R~~Di~-----~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y------------~WPGNvreL~~~l~~~~~~~-  554 (638)
T PRK11388        495 LRM--RREDIP-----ALVNNKLRSLEKRFSTRLKIDDDALARLVSY------------RWPGNDFELRSVIENLALSS-  554 (638)
T ss_pred             hhh--hhhHHH-----HHHHHHHHHHHHHhCCCCCcCHHHHHHHHcC------------CCCChHHHHHHHHHHHHHhC-
Confidence            332  221111     12333333222 1 12357899999988754            58888999999998654432 


Q ss_pred             HcCCCCCCHHhHHHHH
Q psy17703        573 MRYSETVEVQDVDEAW  588 (720)
Q Consensus       573 l~~~~~V~~~Dv~~Ai  588 (720)
                        ....++.+|+...+
T Consensus       555 --~~~~i~~~~lp~~~  568 (638)
T PRK11388        555 --DNGRIRLSDLPEHL  568 (638)
T ss_pred             --CCCeecHHHCchhh
Confidence              23468888876654

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.22  E-value=5e-10  Score=133.58  Aligned_cols=138  Identities=15%  Similarity=0.213  Sum_probs=78.0

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCcccccccc--ceeecCccccceeeecceee----ecCCceeecc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLT--AYITKDPETRQMVLQTGALV----LADSGVCCID  416 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glt--a~~~~~~~~~~~~~~~G~l~----lad~gI~~ID  416 (720)
                      ..-|++|+||||||||.+++.+++.+..... ..-.+.....+.  ..+......|+|..+-..+.    ...+.|+|||
T Consensus       202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiD  281 (731)
T TIGR02639       202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFID  281 (731)
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEe
Confidence            5569999999999999999999986521100 000000001100  00000111122211100000    1135699999


Q ss_pred             ccccCC---------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703        417 EFDKMS---------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD  487 (720)
Q Consensus       417 Eidkm~---------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd  487 (720)
                      |++.+.         .+..+.|...|+.+               .+.+|+|+|+..  |+      ..+..+++|.+||.
T Consensus       282 Eih~l~~~g~~~~~~~~~~~~L~~~l~~g---------------~i~~IgaTt~~e--~~------~~~~~d~al~rRf~  338 (731)
T TIGR02639       282 EIHTIVGAGATSGGSMDASNLLKPALSSG---------------KLRCIGSTTYEE--YK------NHFEKDRALSRRFQ  338 (731)
T ss_pred             cHHHHhccCCCCCccHHHHHHHHHHHhCC---------------CeEEEEecCHHH--HH------HHhhhhHHHHHhCc
Confidence            999874         23456677776644               356799999743  11      22357899999998


Q ss_pred             eEEEecCCChHHHHHHHH
Q psy17703        488 LIFLLLDPQSEQFDARLA  505 (720)
Q Consensus       488 li~~l~d~~~~~~d~~la  505 (720)
                       .+.+..|+.++....+.
T Consensus       339 -~i~v~~p~~~~~~~il~  355 (731)
T TIGR02639       339 -KIDVGEPSIEETVKILK  355 (731)
T ss_pred             -eEEeCCCCHHHHHHHHH
Confidence             67788777766655544

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.21  E-value=8.4e-11  Score=138.85  Aligned_cols=180  Identities=16%  Similarity=0.185  Sum_probs=112.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccc-------cccccceeecCccccceeeeccee----eecCCceee
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSS-------AVGLTAYITKDPETRQMVLQTGAL----VLADSGVCC  414 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss-------~~glta~~~~~~~~~~~~~~~G~l----~lad~gI~~  414 (720)
                      ++||+||||+|||.+++.+++.+..... ..+....       .+|...+.+     |  ..+.|.+    .....+|++
T Consensus       490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyv-----g--~~~~g~L~~~v~~~p~sVll  562 (758)
T PRK11034        490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYV-----G--FDQGGLLTDAVIKHPHAVLL  562 (758)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcc-----c--ccccchHHHHHHhCCCcEEE
Confidence            7999999999999999999998743221 1111110       111111111     0  0111222    122468999


Q ss_pred             ccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCC-------CCCCCc---cccc--ccCCChhh
Q psy17703        415 IDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDS-------QWNTSK---TIID--NIRLPHTL  482 (720)
Q Consensus       415 IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g-------~~~~~~---~~~~--~~~l~~aL  482 (720)
                      +|||++++++.++.|+++|+++.++.. .|.... -.++.+|+|+|.-..       ++....   ...+  ...|+|+|
T Consensus       563 lDEieka~~~v~~~LLq~ld~G~ltd~-~g~~vd-~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pef  640 (758)
T PRK11034        563 LDEIEKAHPDVFNLLLQVMDNGTLTDN-NGRKAD-FRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEF  640 (758)
T ss_pred             eccHhhhhHHHHHHHHHHHhcCeeecC-CCceec-CCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHH
Confidence            999999999999999999999998753 333222 246779999993210       011000   0000  12589999


Q ss_pred             hccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q psy17703        483 LSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQT  539 (720)
Q Consensus       483 lsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~  539 (720)
                      +.|+|.++.+.+...++..+.+...+  ..+.+.+  .+..+.-.+++++.+.|.+.
T Consensus       641 l~Rid~ii~f~~L~~~~l~~I~~~~l--~~~~~~l--~~~~i~l~~~~~~~~~l~~~  693 (758)
T PRK11034        641 RNRLDNIIWFDHLSTDVIHQVVDKFI--VELQAQL--DQKGVSLEVSQEARDWLAEK  693 (758)
T ss_pred             HccCCEEEEcCCCCHHHHHHHHHHHH--HHHHHHH--HHCCCCceECHHHHHHHHHh
Confidence            99999999999888877765554332  1122222  33457788999999988753

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.19  E-value=1.2e-10  Score=128.85  Aligned_cols=194  Identities=22%  Similarity=0.254  Sum_probs=115.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeee---cCCceeeccccccC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVL---ADSGVCCIDEFDKM  421 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~l---ad~gI~~IDEidkm  421 (720)
                      ..+|||+||||||||++++++++.+....+.- ..+.   +.......   .....+ ..+..   ...+|+||||+|.+
T Consensus       165 p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v-~~~~---l~~~~~g~---~~~~i~-~~f~~a~~~~p~IlfiDEiD~l  236 (389)
T PRK03992        165 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRV-VGSE---LVQKFIGE---GARLVR-ELFELAREKAPSIIFIDEIDAI  236 (389)
T ss_pred             CCceEEECCCCCChHHHHHHHHHHhCCCEEEe-ehHH---HhHhhccc---hHHHHH-HHHHHHHhcCCeEEEEechhhh
Confidence            34799999999999999999998775432211 0000   00000000   000000 00111   13579999999987


Q ss_pred             C-----------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--ccee
Q psy17703        422 S-----------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDL  488 (720)
Q Consensus       422 ~-----------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdl  488 (720)
                      .           .+.+..+.+.+.+..      |.  .-..++.||||+|...             .+++++++  |||.
T Consensus       237 ~~~r~~~~~~~~~~~~~~l~~lL~~ld------~~--~~~~~v~VI~aTn~~~-------------~ld~allRpgRfd~  295 (389)
T PRK03992        237 AAKRTDSGTSGDREVQRTLMQLLAEMD------GF--DPRGNVKIIAATNRID-------------ILDPAILRPGRFDR  295 (389)
T ss_pred             hcccccCCCCccHHHHHHHHHHHHhcc------cc--CCCCCEEEEEecCChh-------------hCCHHHcCCccCce
Confidence            3           334455666554311      10  0123578999999654             48899986  9999


Q ss_pred             EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS  567 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla  567 (720)
                      .+.+..|..+++...+..|.            +. .+.+.+.   ...+..    .      .  -..+.+.+.++++.|
T Consensus       296 ~I~v~~P~~~~R~~Il~~~~------------~~~~~~~~~~---~~~la~----~------t--~g~sgadl~~l~~eA  348 (389)
T PRK03992        296 IIEVPLPDEEGRLEILKIHT------------RKMNLADDVD---LEELAE----L------T--EGASGADLKAICTEA  348 (389)
T ss_pred             EEEECCCCHHHHHHHHHHHh------------ccCCCCCcCC---HHHHHH----H------c--CCCCHHHHHHHHHHH
Confidence            99998887776655444321            11 1111111   111111    0      0  124569999999999


Q ss_pred             HHHHHHcCCCCCCHHhHHHHHHHHHHH
Q psy17703        568 EAHAKMRYSETVEVQDVDEAWRLHREA  594 (720)
Q Consensus       568 ~A~A~l~~~~~V~~~Dv~~Ai~l~~~~  594 (720)
                      .-.|.-+.+..|+.+|+.+|+.-++..
T Consensus       349 ~~~a~~~~~~~i~~~d~~~A~~~~~~~  375 (389)
T PRK03992        349 GMFAIRDDRTEVTMEDFLKAIEKVMGK  375 (389)
T ss_pred             HHHHHHcCCCCcCHHHHHHHHHHHhcc
Confidence            888887888899999999998866543

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=99.19  E-value=2.2e-10  Score=129.32  Aligned_cols=212  Identities=17%  Similarity=0.221  Sum_probs=135.1

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCc--c--ccCCcccccccc---ceeecCccccceeeecceeeecCCceeecc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ--Y--TSGKGSSAVGLT---AYITKDPETRQMVLQTGALVLADSGVCCID  416 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~--~--~~g~~ss~~glt---a~~~~~~~~~~~~~~~G~l~lad~gI~~ID  416 (720)
                      .+.++++.|++||||+.++++++...++..  +  .........-+.   .+..+...++.....+|.+..+++|++|||
T Consensus       161 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~  240 (445)
T TIGR02915       161 SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLD  240 (445)
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEe
Confidence            578999999999999999999999876421  1  111110000000   000111122333445788899999999999


Q ss_pred             ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce-eEEEecCC
Q psy17703        417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD-LIFLLLDP  495 (720)
Q Consensus       417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd-li~~l~d~  495 (720)
                      |++.|+...|..|+++++++.+..  .|.....+.++.+|+|+|....      .....-.+.+.|+.|+. +.+.+++.
T Consensus       241 ~i~~l~~~~q~~l~~~l~~~~~~~--~~~~~~~~~~~rii~~~~~~l~------~~~~~~~~~~~L~~~l~~~~i~lPpL  312 (445)
T TIGR02915       241 EIGDLPLNLQAKLLRFLQERVIER--LGGREEIPVDVRIVCATNQDLK------RMIAEGTFREDLFYRIAEISITIPPL  312 (445)
T ss_pred             chhhCCHHHHHHHHHHHhhCeEEe--CCCCceeeeceEEEEecCCCHH------HHHHcCCccHHHHHHhccceecCCCc
Confidence            999999999999999999987643  5555677889999999986531      11222357788888987 33344433


Q ss_pred             ChHHHHHHHHhhcchhHHHHHHHHH-Hhh--cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703        496 QSEQFDARLARHLDITVLRDYIAYA-QEH--LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK  572 (720)
Q Consensus       496 ~~~~~d~~la~~i~~~~l~~~i~~a-r~~--~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~  572 (720)
                      .+.  .+.|.     .+.+.|+... ++.  -.+.+++++.+.|..|            +||.+.|+|+.+++-+-..+.
T Consensus       313 r~R--~~Di~-----~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~------------~wpgNvreL~~~i~~a~~~~~  373 (445)
T TIGR02915       313 RSR--DGDAV-----LLANAFLERFARELKRKTKGFTDDALRALEAH------------AWPGNVRELENKVKRAVIMAE  373 (445)
T ss_pred             hhc--hhhHH-----HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhC------------CCCChHHHHHHHHHHHHHhCC
Confidence            222  22111     1223333332 221  1357999999988755            578888999999986544332


Q ss_pred             HcCCCCCCHHhHH
Q psy17703        573 MRYSETVEVQDVD  585 (720)
Q Consensus       573 l~~~~~V~~~Dv~  585 (720)
                         ...++.+|+.
T Consensus       374 ---~~~i~~~~l~  383 (445)
T TIGR02915       374 ---GNQITAEDLG  383 (445)
T ss_pred             ---CCcccHHHcC
Confidence               3466766653

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=99.18  E-value=1.5e-10  Score=132.78  Aligned_cols=211  Identities=18%  Similarity=0.207  Sum_probs=132.4

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCC--cc--ccCCcccccccc---ceeecCccccceeeecceeeecCCceeecc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRS--QY--TSGKGSSAVGLT---AYITKDPETRQMVLQTGALVLADSGVCCID  416 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~--~~--~~g~~ss~~glt---a~~~~~~~~~~~~~~~G~l~lad~gI~~ID  416 (720)
                      .+.+|||+|++||||+.+|++++...++.  .+  ..........+.   .+......++...-.+|.+..|++|.+|||
T Consensus       226 ~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~Ld  305 (520)
T PRK10820        226 LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLD  305 (520)
T ss_pred             CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEe
Confidence            57899999999999999999999877643  11  111111000000   000000111111234577778999999999


Q ss_pred             ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce-eEEEecCC
Q psy17703        417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD-LIFLLLDP  495 (720)
Q Consensus       417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd-li~~l~d~  495 (720)
                      |++.|++..|..|+.+++++++.  +.|.....+.++.+|+|++...      ..+.+.-.+.+.|+.|+. +.+.+++.
T Consensus       306 eI~~L~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~vRiI~st~~~l------~~l~~~g~f~~dL~~rL~~~~i~lPpL  377 (520)
T PRK10820        306 EIGEMSPRMQAKLLRFLNDGTFR--RVGEDHEVHVDVRVICATQKNL------VELVQKGEFREDLYYRLNVLTLNLPPL  377 (520)
T ss_pred             ChhhCCHHHHHHHHHHHhcCCcc--cCCCCcceeeeeEEEEecCCCH------HHHHHcCCccHHHHhhcCeeEEeCCCc
Confidence            99999999999999999987653  3555566677889999987442      112233357788999986 44455544


Q ss_pred             ChHHHHHHHHhhcchhHHHHHHHH-HHhh--cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703        496 QSEQFDARLARHLDITVLRDYIAY-AQEH--LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK  572 (720)
Q Consensus       496 ~~~~~d~~la~~i~~~~l~~~i~~-ar~~--~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~  572 (720)
                      .+...|  +.     .+...|+.. +++.  ..|.+++++.+.|..|            +||.+.|+|+.++.-+-..+ 
T Consensus       378 reR~~D--i~-----~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y------------~WPGNvreL~nvl~~a~~~~-  437 (520)
T PRK10820        378 RDRPQD--IM-----PLTELFVARFADEQGVPRPKLAADLNTVLTRY------------GWPGNVRQLKNAIYRALTQL-  437 (520)
T ss_pred             ccChhH--HH-----HHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcC------------CCCCHHHHHHHHHHHHHHhC-
Confidence            433222  11     122333332 2221  2468999999888744            58888999999886553332 


Q ss_pred             HcCCCCCCHHhH
Q psy17703        573 MRYSETVEVQDV  584 (720)
Q Consensus       573 l~~~~~V~~~Dv  584 (720)
                        ....++.+|+
T Consensus       438 --~~~~i~~~~~  447 (520)
T PRK10820        438 --EGYELRPQDI  447 (520)
T ss_pred             --CCCcccHHHc
Confidence              2346777775

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=99.17  E-value=2.7e-10  Score=129.54  Aligned_cols=215  Identities=20%  Similarity=0.244  Sum_probs=139.7

Q ss_pred             CCCccEEEEcCCCCHHHHHHHHHHhhCCCCc--c--ccCCcccccccc---ceeecCccccceeeecceeeecCCceeec
Q psy17703        343 PAEINILLCGDPGTSKSQLLSYVYDLVPRSQ--Y--TSGKGSSAVGLT---AYITKDPETRQMVLQTGALVLADSGVCCI  415 (720)
Q Consensus       343 pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~--~--~~g~~ss~~glt---a~~~~~~~~~~~~~~~G~l~lad~gI~~I  415 (720)
                      +.+.++|+.|++||||+.++++++...++..  +  .........-+.   .+..+...++......|.+..+++|.+||
T Consensus       159 ~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l  238 (469)
T PRK10923        159 RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFL  238 (469)
T ss_pred             ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEE
Confidence            3688999999999999999999999876531  1  111100000000   00001112233334678888999999999


Q ss_pred             cccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce-eEEEecC
Q psy17703        416 DEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD-LIFLLLD  494 (720)
Q Consensus       416 DEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd-li~~l~d  494 (720)
                      ||++.|+.+.|..|+.+++++.+.-  .|.....+.++.+|+|+|...      ....+.-.+.+.|+.||. +.+.+++
T Consensus       239 ~~i~~l~~~~q~~L~~~l~~~~~~~--~~~~~~~~~~~rii~~~~~~l------~~~~~~~~~~~~L~~~l~~~~i~~Pp  310 (469)
T PRK10923        239 DEIGDMPLDVQTRLLRVLADGQFYR--VGGYAPVKVDVRIIAATHQNL------EQRVQEGKFREDLFHRLNVIRVHLPP  310 (469)
T ss_pred             eccccCCHHHHHHHHHHHhcCcEEe--CCCCCeEEeeEEEEEeCCCCH------HHHHHcCCchHHHHHHhcceeecCCC
Confidence            9999999999999999999887654  454455667899999998542      112233458889999996 4455554


Q ss_pred             CChHHHHHHHHhhcchhHHHHHHHHHHhhc---CCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHH
Q psy17703        495 PQSEQFDARLARHLDITVLRDYIAYAQEHL---SPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHA  571 (720)
Q Consensus       495 ~~~~~~d~~la~~i~~~~l~~~i~~ar~~~---~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A  571 (720)
                      ..+...|  +.     .+++.|+.......   .+.+++++.+.|..|            +||.+.|+|+.+++-+-..+
T Consensus       311 LreR~~D--i~-----~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~------------~wpgNv~eL~~~i~~~~~~~  371 (469)
T PRK10923        311 LRERRED--IP-----RLARHFLQVAARELGVEAKLLHPETEAALTRL------------AWPGNVRQLENTCRWLTVMA  371 (469)
T ss_pred             cccchhh--HH-----HHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC------------CCCChHHHHHHHHHHHHHhC
Confidence            4333222  11     23344444332221   246899999888754            68889999999997665443


Q ss_pred             HHcCCCCCCHHhHHHH
Q psy17703        572 KMRYSETVEVQDVDEA  587 (720)
Q Consensus       572 ~l~~~~~V~~~Dv~~A  587 (720)
                         -...++.+|+...
T Consensus       372 ---~~~~i~~~~l~~~  384 (469)
T PRK10923        372 ---AGQEVLIQDLPGE  384 (469)
T ss_pred             ---CCCcccHHHCcHh
Confidence               2457888887544

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.16  E-value=2.4e-09  Score=126.64  Aligned_cols=174  Identities=11%  Similarity=0.143  Sum_probs=92.0

Q ss_pred             CCCccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccc--cceeecCccccceeeecc----eeeecCCceeec
Q psy17703        343 PAEINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGL--TAYITKDPETRQMVLQTG----ALVLADSGVCCI  415 (720)
Q Consensus       343 pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~gl--ta~~~~~~~~~~~~~~~G----~l~lad~gI~~I  415 (720)
                      ...-|+||+||||||||.+++.++..+..... ..-.+.....+  ..-+......|+|..+-.    .+....++|+||
T Consensus       205 ~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfI  284 (758)
T PRK11034        205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFI  284 (758)
T ss_pred             cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEe
Confidence            35679999999999999999999975411100 00000000000  000000111122211100    111234689999


Q ss_pred             cccccCC---------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703        416 DEFDKMS---------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF  486 (720)
Q Consensus       416 DEidkm~---------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF  486 (720)
                      ||++.+-         .+..+.|..+++.               .+..+|||+|+..-+        ..+..+++|.+||
T Consensus       285 DEIh~L~g~g~~~~g~~d~~nlLkp~L~~---------------g~i~vIgATt~~E~~--------~~~~~D~AL~rRF  341 (758)
T PRK11034        285 DEIHTIIGAGAASGGQVDAANLIKPLLSS---------------GKIRVIGSTTYQEFS--------NIFEKDRALARRF  341 (758)
T ss_pred             ccHHHHhccCCCCCcHHHHHHHHHHHHhC---------------CCeEEEecCChHHHH--------HHhhccHHHHhhC
Confidence            9999761         1223345555543               346789999975311        1235789999999


Q ss_pred             eeEEEecCCChHHHHHHHHhhc-----------chhHHHHHHHHHHhhcCC-cchHHHHHHHHHHH
Q psy17703        487 DLIFLLLDPQSEQFDARLARHL-----------DITVLRDYIAYAQEHLSP-TLSEEASQRLIQTY  540 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la~~i-----------~~~~l~~~i~~ar~~~~p-~ls~ea~~~l~~~y  540 (720)
                      + .+.+..|+.++...+|....           +.+.++.-+..+..++.. .+++.|.+.+.+..
T Consensus       342 q-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~  406 (758)
T PRK11034        342 Q-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAG  406 (758)
T ss_pred             c-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHH
Confidence            8 67788787776665554321           333444444444444443 34455555554443

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=99.15  E-value=3.6e-10  Score=134.21  Aligned_cols=199  Identities=18%  Similarity=0.218  Sum_probs=127.3

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCc----cccCCccccccccc----eeecCccccceeeecceeeecCCceeec
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ----YTSGKGSSAVGLTA----YITKDPETRQMVLQTGALVLADSGVCCI  415 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~----~~~g~~ss~~glta----~~~~~~~~~~~~~~~G~l~lad~gI~~I  415 (720)
                      .+.||||.|+||||||.+|++++..+++.-    ......... ++..    +..+...++......|.+..+++|++||
T Consensus       398 ~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~-~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~L  476 (686)
T PRK15429        398 SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA-GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFL  476 (686)
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh-hHhhhhhcCcccccccccccchhhHHHhcCCCeEEE
Confidence            678999999999999999999999876421    111111000 0000    0001111222233456777899999999


Q ss_pred             cccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE-EEecC
Q psy17703        416 DEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI-FLLLD  494 (720)
Q Consensus       416 DEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli-~~l~d  494 (720)
                      ||++.++.+.|..|+.+++++.+..  .|.....+.++.+|+++|....      .....-.+...|+.|+... +.+++
T Consensus       477 dei~~L~~~~Q~~L~~~l~~~~~~~--~g~~~~~~~~~RiI~~t~~~l~------~~~~~~~f~~~L~~~l~~~~i~lPp  548 (686)
T PRK15429        477 DEVGDMPLELQPKLLRVLQEQEFER--LGSNKIIQTDVRLIAATNRDLK------KMVADREFRSDLYYRLNVFPIHLPP  548 (686)
T ss_pred             echhhCCHHHHHHHHHHHHhCCEEe--CCCCCcccceEEEEEeCCCCHH------HHHHcCcccHHHHhccCeeEEeCCC
Confidence            9999999999999999999886654  5555566788999999986431      1223335778888898743 33333


Q ss_pred             CChHHHHHHHHhhcchhHHHHHHHH-HHhhc--CCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703        495 PQSEQFDARLARHLDITVLRDYIAY-AQEHL--SPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH  570 (720)
Q Consensus       495 ~~~~~~d~~la~~i~~~~l~~~i~~-ar~~~--~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~  570 (720)
                      .  .++.+-|.     .+++.|+.. +++.-  .+.+++++.+.|..|            +||.+.|+|+.+++-+-..
T Consensus       549 L--reR~~Di~-----~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y------------~WPGNvrEL~~~i~~a~~~  608 (686)
T PRK15429        549 L--RERPEDIP-----LLVKAFTFKIARRMGRNIDSIPAETLRTLSNM------------EWPGNVRELENVIERAVLL  608 (686)
T ss_pred             h--hhhHhHHH-----HHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC------------CCCCcHHHHHHHHHHHHHh
Confidence            3  22222221     233444433 33211  236899999888754            5888999999998766543

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.14  E-value=4.3e-10  Score=126.85  Aligned_cols=184  Identities=22%  Similarity=0.187  Sum_probs=109.9

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCC---ccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGK---GSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~---~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      -.|||+||||||||.+++++++.+....+.-..   .+..+|.+...++     +....+.   .....|+||||+|++.
T Consensus       260 kGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~-----~~f~~A~---~~~P~IL~IDEID~~~  331 (489)
T CHL00195        260 RGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMR-----QMIRIAE---ALSPCILWIDEIDKAF  331 (489)
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHH-----HHHHHHH---hcCCcEEEehhhhhhh
Confidence            469999999999999999999977543322100   0111111111110     0100011   1236899999999864


Q ss_pred             hH------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--ccee
Q psy17703        423 DT------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDL  488 (720)
Q Consensus       423 ~~------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdl  488 (720)
                      ..            ....++..|++.             +.++.+|||+|...             .||+++++  |||.
T Consensus       332 ~~~~~~~d~~~~~rvl~~lL~~l~~~-------------~~~V~vIaTTN~~~-------------~Ld~allR~GRFD~  385 (489)
T CHL00195        332 SNSESKGDSGTTNRVLATFITWLSEK-------------KSPVFVVATANNID-------------LLPLEILRKGRFDE  385 (489)
T ss_pred             ccccCCCCchHHHHHHHHHHHHHhcC-------------CCceEEEEecCChh-------------hCCHHHhCCCcCCe
Confidence            31            123455555421             24578999999654             59999997  9999


Q ss_pred             EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPT-LSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS  567 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~-ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla  567 (720)
                      +|.+..|+.+++...+..|+         ..    ..|. ..+...+.+..          ..  -..|.+.++.+++-|
T Consensus       386 ~i~v~lP~~~eR~~Il~~~l---------~~----~~~~~~~~~dl~~La~----------~T--~GfSGAdI~~lv~eA  440 (489)
T CHL00195        386 IFFLDLPSLEEREKIFKIHL---------QK----FRPKSWKKYDIKKLSK----------LS--NKFSGAEIEQSIIEA  440 (489)
T ss_pred             EEEeCCcCHHHHHHHHHHHH---------hh----cCCCcccccCHHHHHh----------hc--CCCCHHHHHHHHHHH
Confidence            99998887776655544332         11    1221 11111222221          11  124569999999988


Q ss_pred             HHHHHHcCCCCCCHHhHHHHHH
Q psy17703        568 EAHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       568 ~A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      ...|..+.+ .++.+|+..|+.
T Consensus       441 ~~~A~~~~~-~lt~~dl~~a~~  461 (489)
T CHL00195        441 MYIAFYEKR-EFTTDDILLALK  461 (489)
T ss_pred             HHHHHHcCC-CcCHHHHHHHHH
Confidence            877766654 589999999976

>TIGR00763 lon ATP-dependent protease La

Probab=99.14  E-value=1.8e-10  Score=138.12  Aligned_cols=171  Identities=22%  Similarity=0.261  Sum_probs=99.7

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCcc-ccccccceeecCccccceeeeccee----e--ecCCceeecc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGS-SAVGLTAYITKDPETRQMVLQTGAL----V--LADSGVCCID  416 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~s-s~~glta~~~~~~~~~~~~~~~G~l----~--lad~gI~~ID  416 (720)
                      .-++||+||||||||++++++++.+.+..+. +..+. ....+...  +....+.   .+|.+    .  ...+.+++||
T Consensus       347 ~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~--~~~~~g~---~~g~i~~~l~~~~~~~~villD  421 (775)
T TIGR00763       347 GPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH--RRTYVGA---MPGRIIQGLKKAKTKNPLFLLD  421 (775)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC--CCceeCC---CCchHHHHHHHhCcCCCEEEEe
Confidence            3489999999999999999999987543321 11110 00000000  0000000   01111    1  1235699999


Q ss_pred             ccccCChHH----HHHHHHHHHhc---eEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        417 EFDKMSDTT----RSILHEVMEQQ---TLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       417 Eidkm~~~~----~~~L~e~mE~~---~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      |||++.++.    .++|+++|+..   .+.-...+....+ .++.+|+|+|+..             .+|++|++||+ +
T Consensus       422 Eidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~-s~v~~I~TtN~~~-------------~i~~~L~~R~~-v  486 (775)
T TIGR00763       422 EIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDL-SKVIFIATANSID-------------TIPRPLLDRME-V  486 (775)
T ss_pred             chhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceecc-CCEEEEEecCCch-------------hCCHHHhCCee-E
Confidence            999997643    37899999742   2211111222221 4678899999754             58999999997 5


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhc---CCcchHHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHL---SPTLSEEASQRLIQTYV  541 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~---~p~ls~ea~~~l~~~y~  541 (720)
                      +.+..++.++....+..++..    +.+..  ..+   .-.+++++...|++.|.
T Consensus       487 i~~~~~~~~e~~~I~~~~l~~----~~~~~--~~l~~~~~~~~~~~l~~i~~~~~  535 (775)
T TIGR00763       487 IELSGYTEEEKLEIAKKYLIP----KALED--HGLKPDELKITDEALLLLIKYYT  535 (775)
T ss_pred             EecCCCCHHHHHHHHHHHHHH----HHHHH--cCCCcceEEECHHHHHHHHHhcC
Confidence            678777766655454443321    11111  012   23689999999998765

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=99.13  E-value=4.4e-10  Score=130.92  Aligned_cols=207  Identities=18%  Similarity=0.202  Sum_probs=119.0

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCC-----------ccccCCccc--c--c--cccceeecCc----------ccc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRS-----------QYTSGKGSS--A--V--GLTAYITKDP----------ETR  396 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~-----------~~~~g~~ss--~--~--glta~~~~~~----------~~~  396 (720)
                      ...|++|+||||||||++++.+++...+.           +...+....  .  .  .+.... .++          .++
T Consensus       174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~-~~~~~~~a~~~l~~~g  252 (615)
T TIGR02903       174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSV-HDPIYQGARRDLAETG  252 (615)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCc-cHHHHHHHHHHHHHcC
Confidence            45689999999999999999998766321           111111100  0  0  000000 000          011


Q ss_pred             ceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCe---------------EEeecCceEEEecccC
Q psy17703        397 QMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGI---------------ICQLNARTSILAAANP  461 (720)
Q Consensus       397 ~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~---------------~~~l~a~~~iiaaaNp  461 (720)
                      ......|.+..+++|++||||++.|++..|..|+.+|+++.+.+.....               ....+.++.++++++.
T Consensus       253 l~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~  332 (615)
T TIGR02903       253 VPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTR  332 (615)
T ss_pred             CCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccc
Confidence            1223456677788999999999999999999999999998876532210               1123456777776653


Q ss_pred             CCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Q psy17703        462 CDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYV  541 (720)
Q Consensus       462 ~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~  541 (720)
                      ...            .++++|.+||.. +.+.+...++....+         +.++    ......+++++.+.|.++-.
T Consensus       333 ~~~------------~l~~aLrSR~~~-i~~~pls~edi~~Il---------~~~a----~~~~v~ls~eal~~L~~ys~  386 (615)
T TIGR02903       333 DPE------------EINPALRSRCAE-VFFEPLTPEDIALIV---------LNAA----EKINVHLAAGVEELIARYTI  386 (615)
T ss_pred             ccc------------ccCHHHHhceeE-EEeCCCCHHHHHHHH---------HHHH----HHcCCCCCHHHHHHHHHCCC
Confidence            321            378999999984 455555444332222         2211    12344688888888876432


Q ss_pred             HhhhcCCCCCCcccCHHHHHHHHHHHHHHHHH--------cCCCCCCHHhHHHHHHHH
Q psy17703        542 DMRKLGAGRGRISAYPRQLESLIRLSEAHAKM--------RYSETVEVQDVDEAWRLH  591 (720)
Q Consensus       542 ~lr~~~~~~~~~~~t~R~le~lirla~A~A~l--------~~~~~V~~~Dv~~Ai~l~  591 (720)
                      +.|             |.+ .++.-+-..+..        .....|+.+|+++++..-
T Consensus       387 ~gR-------------ral-n~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~  430 (615)
T TIGR02903       387 EGR-------------KAV-NILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS  430 (615)
T ss_pred             cHH-------------HHH-HHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence            221             222 222211122111        122368999999998753

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional

Probab=99.12  E-value=7.7e-10  Score=125.35  Aligned_cols=215  Identities=15%  Similarity=0.181  Sum_probs=136.3

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCc--c--ccCCcccccccc---ceeecCccccceeeecceeeecCCceeecc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ--Y--TSGKGSSAVGLT---AYITKDPETRQMVLQTGALVLADSGVCCID  416 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~--~--~~g~~ss~~glt---a~~~~~~~~~~~~~~~G~l~lad~gI~~ID  416 (720)
                      .+.++|+.|++||||+.++++++..+++..  +  ..........+.   .+......++.....+|.+..+++|++|||
T Consensus       165 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld  244 (457)
T PRK11361        165 SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLD  244 (457)
T ss_pred             CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEe
Confidence            568999999999999999999998765421  1  111110000000   000011123334456788999999999999


Q ss_pred             ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCC
Q psy17703        417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQ  496 (720)
Q Consensus       417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~  496 (720)
                      |++.|+.+.|..|+.+++.+.+.  +.|.....+.++.+|+|+|....      .+...-.+.+.|+.|+.. +.+.-|+
T Consensus       245 ~i~~l~~~~q~~L~~~l~~~~~~--~~~~~~~~~~~~rii~~t~~~l~------~~~~~g~~~~~l~~~l~~-~~i~~pp  315 (457)
T PRK11361        245 EIGEMPLVLQAKLLRILQEREFE--RIGGHQTIKVDIRIIAATNRDLQ------AMVKEGTFREDLFYRLNV-IHLILPP  315 (457)
T ss_pred             chhhCCHHHHHHHHHHHhcCcEE--eCCCCceeeeceEEEEeCCCCHH------HHHHcCCchHHHHHHhcc-ceecCCC
Confidence            99999999999999999988765  35666677888999999996531      122233577788888863 3333233


Q ss_pred             hHHHHHHHHhhcchhHHHHHHHHHHhh---cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHH
Q psy17703        497 SEQFDARLARHLDITVLRDYIAYAQEH---LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKM  573 (720)
Q Consensus       497 ~~~~d~~la~~i~~~~l~~~i~~ar~~---~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l  573 (720)
                      -.++...+.     .+...|+......   -.+.+++++.+.|..|            +||.+.|+|+.+++-+-..+  
T Consensus       316 LreR~~di~-----~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~------------~wpgNv~eL~~~~~~~~~~~--  376 (457)
T PRK11361        316 LRDRREDIS-----LLANHFLQKFSSENQRDIIDIDPMAMSLLTAW------------SWPGNIRELSNVIERAVVMN--  376 (457)
T ss_pred             hhhchhhHH-----HHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcC------------CCCCcHHHHHHHHHHHHHhC--
Confidence            222211111     1233334333221   1357899999888744            68888999999987654432  


Q ss_pred             cCCCCCCHHhHHHH
Q psy17703        574 RYSETVEVQDVDEA  587 (720)
Q Consensus       574 ~~~~~V~~~Dv~~A  587 (720)
                       ....++.+|+...
T Consensus       377 -~~~~i~~~~l~~~  389 (457)
T PRK11361        377 -SGPIIFSEDLPPQ  389 (457)
T ss_pred             -CCCcccHHHChHh
Confidence             2346788877654

>KOG2004|consensus

Probab=99.11  E-value=1.4e-10  Score=130.00  Aligned_cols=169  Identities=22%  Similarity=0.308  Sum_probs=104.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccce-eec---Cccccceeeecceee------ecCCceee
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAY-ITK---DPETRQMVLQTGALV------LADSGVCC  414 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~-~~~---~~~~~~~~~~~G~l~------lad~gI~~  414 (720)
                      +--++|+||||+|||+++++||+.+.|-.+.    .+..|++-- -.+   ..+.|   --||.++      ...+-+++
T Consensus       438 GkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR----fSvGG~tDvAeIkGHRRTYVG---AMPGkiIq~LK~v~t~NPliL  510 (906)
T KOG2004|consen  438 GKILCFVGPPGVGKTSIAKSIARALNRKFFR----FSVGGMTDVAEIKGHRRTYVG---AMPGKIIQCLKKVKTENPLIL  510 (906)
T ss_pred             CcEEEEeCCCCCCcccHHHHHHHHhCCceEE----EeccccccHHhhcccceeeec---cCChHHHHHHHhhCCCCceEE
Confidence            3468999999999999999999999987654    222233210 000   00111   2355543      23567899


Q ss_pred             ccccccCCh----HHHHHHHHHHH-hceEeeeccCeEEeec-CceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703        415 IDEFDKMSD----TTRSILHEVME-QQTLSIAKAGIICQLN-ARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL  488 (720)
Q Consensus       415 IDEidkm~~----~~~~~L~e~mE-~~~vsi~k~g~~~~l~-a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl  488 (720)
                      |||+||+..    +--++|+|+|+ +|.-++...-....+. +++.+|||||...             .+|+||++|..+
T Consensus       511 iDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~id-------------tIP~pLlDRMEv  577 (906)
T KOG2004|consen  511 IDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVID-------------TIPPPLLDRMEV  577 (906)
T ss_pred             eehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccc-------------cCChhhhhhhhe
Confidence            999999875    23569999995 3333332222222222 5789999999776             699999999985


Q ss_pred             EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhc-----CCcchHHHHHHHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHL-----SPTLSEEASQRLIQTYVD  542 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~-----~p~ls~ea~~~l~~~y~~  542 (720)
                      | .+.-...++.-.+-.+|+        +-.++..+     +-.+++.|...|+.+|+.
T Consensus       578 I-elsGYv~eEKv~IA~~yL--------ip~a~~~~gl~~e~v~is~~al~~lI~~Ycr  627 (906)
T KOG2004|consen  578 I-ELSGYVAEEKVKIAERYL--------IPQALKDCGLKPEQVKISDDALLALIERYCR  627 (906)
T ss_pred             e-eccCccHHHHHHHHHHhh--------hhHHHHHcCCCHHhcCccHHHHHHHHHHHHH
Confidence            4 444333333322222332        12232222     346899999999999974

>PRK15115 response regulator GlrR; Provisional

Probab=99.11  E-value=1.1e-09  Score=123.80  Aligned_cols=215  Identities=18%  Similarity=0.246  Sum_probs=135.8

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCc--c--ccCCcccccccc---ceeecCccccceeeecceeeecCCceeecc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ--Y--TSGKGSSAVGLT---AYITKDPETRQMVLQTGALVLADSGVCCID  416 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~--~--~~g~~ss~~glt---a~~~~~~~~~~~~~~~G~l~lad~gI~~ID  416 (720)
                      .+.++++.|++||||+.++++++...++..  +  ..........+.   .+..+...++......|.+..+++|++|||
T Consensus       156 ~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~  235 (444)
T PRK15115        156 SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLD  235 (444)
T ss_pred             CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEE
Confidence            578999999999999999999999876531  1  110000000000   000111223334456788889999999999


Q ss_pred             ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCC
Q psy17703        417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQ  496 (720)
Q Consensus       417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~  496 (720)
                      |++.|+.+.|..|+.+++++.+.  ..|.....+.++.+|+|+|...      ......-.+.+.|+.|+... .+.-|+
T Consensus       236 ~i~~l~~~~q~~L~~~l~~~~~~--~~g~~~~~~~~~rii~~~~~~l------~~~~~~~~f~~~l~~~l~~~-~i~lPp  306 (444)
T PRK15115        236 EIGDMPAPLQVKLLRVLQERKVR--PLGSNRDIDIDVRIISATHRDL------PKAMARGEFREDLYYRLNVV-SLKIPA  306 (444)
T ss_pred             ccccCCHHHHHHHHHHHhhCCEE--eCCCCceeeeeEEEEEeCCCCH------HHHHHcCCccHHHHHhhcee-eecCCC
Confidence            99999999999999999988764  3555566677899999998431      11222335778888888732 222222


Q ss_pred             hHHHHHHHHhhcchhHHHHHHHHH-Hhh--cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHH
Q psy17703        497 SEQFDARLARHLDITVLRDYIAYA-QEH--LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKM  573 (720)
Q Consensus       497 ~~~~d~~la~~i~~~~l~~~i~~a-r~~--~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l  573 (720)
                      -.++.+.|.     .+++.|+... +..  ..+.+++++.+.|..|            +||.+.|+|+.+++.+-..+  
T Consensus       307 Lr~R~eDi~-----~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~------------~WpgNvreL~~~i~~~~~~~--  367 (444)
T PRK15115        307 LAERTEDIP-----LLANHLLRQAAERHKPFVRAFSTDAMKRLMTA------------SWPGNVRQLVNVIEQCVALT--  367 (444)
T ss_pred             hHhccccHH-----HHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC------------CCCChHHHHHHHHHHHHHhC--
Confidence            222211111     1234444433 222  1235899999998754            68888999999998764432  


Q ss_pred             cCCCCCCHHhHHHH
Q psy17703        574 RYSETVEVQDVDEA  587 (720)
Q Consensus       574 ~~~~~V~~~Dv~~A  587 (720)
                       ....++.+|+...
T Consensus       368 -~~~~i~~~~l~~~  380 (444)
T PRK15115        368 -SSPVISDALVEQA  380 (444)
T ss_pred             -CCCccChhhhhhh
Confidence             2446777776543

>KOG2028|consensus

Probab=99.11  E-value=1.8e-10  Score=120.28  Aligned_cols=193  Identities=18%  Similarity=0.244  Sum_probs=105.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCcccc-ceeeecceeeecCCceeeccccccCChHH
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETR-QMVLQTGALVLADSGVCCIDEFDKMSDTT  425 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~-~~~~~~G~l~lad~gI~~IDEidkm~~~~  425 (720)
                      .++|+||||||||+|++.++.......|..-. .++...+..-+++.... +..    .......-|+||||++++++..
T Consensus       164 SmIlWGppG~GKTtlArlia~tsk~~Syrfve-lSAt~a~t~dvR~ife~aq~~----~~l~krkTilFiDEiHRFNksQ  238 (554)
T KOG2028|consen  164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVE-LSATNAKTNDVRDIFEQAQNE----KSLTKRKTILFIDEIHRFNKSQ  238 (554)
T ss_pred             ceEEecCCCCchHHHHHHHHhhcCCCceEEEE-EeccccchHHHHHHHHHHHHH----HhhhcceeEEEeHHhhhhhhhh
Confidence            58899999999999999999866433221000 00000000001110000 000    0001125699999999999999


Q ss_pred             HHHHHHHHHhceEeeeccCeEEeecCceEEEecc--cCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHH
Q psy17703        426 RSILHEVMEQQTLSIAKAGIICQLNARTSILAAA--NPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDAR  503 (720)
Q Consensus       426 ~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaa--Np~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~  503 (720)
                      |+.++...|.+.|++               |+|+  ||.+             +|..+|+||+- +|.+...+-+.....
T Consensus       239 QD~fLP~VE~G~I~l---------------IGATTENPSF-------------qln~aLlSRC~-VfvLekL~~n~v~~i  289 (554)
T KOG2028|consen  239 QDTFLPHVENGDITL---------------IGATTENPSF-------------QLNAALLSRCR-VFVLEKLPVNAVVTI  289 (554)
T ss_pred             hhcccceeccCceEE---------------EecccCCCcc-------------chhHHHHhccc-eeEeccCCHHHHHHH
Confidence            999998888777654               5555  5544             78999999996 666665555554444


Q ss_pred             HHhhcchhHHHHHHHHHHhhcCCcchH---HHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHH--HHHHHHc--CC
Q psy17703        504 LARHLDITVLRDYIAYAQEHLSPTLSE---EASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS--EAHAKMR--YS  576 (720)
Q Consensus       504 la~~i~~~~l~~~i~~ar~~~~p~ls~---ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla--~A~A~l~--~~  576 (720)
                      |.+.|..      +...++... .++.   ...+.+++|...+..+.         .|.....+.++  ...-|-.  -+
T Consensus       290 L~raia~------l~dser~~~-~l~n~s~~ve~siidyla~lsdGD---------aR~aLN~Lems~~m~~tr~g~~~~  353 (554)
T KOG2028|consen  290 LMRAIAS------LGDSERPTD-PLPNSSMFVEDSIIDYLAYLSDGD---------ARAALNALEMSLSMFCTRSGQSSR  353 (554)
T ss_pred             HHHHHHh------hccccccCC-CCCCcchhhhHHHHHHHHHhcCch---------HHHHHHHHHHHHHHHHhhcCCccc
Confidence            4432210      001111111 1211   34455555555544322         24444444444  3333322  34


Q ss_pred             CCCCHHhHHHHHH
Q psy17703        577 ETVEVQDVDEAWR  589 (720)
Q Consensus       577 ~~V~~~Dv~~Ai~  589 (720)
                      ..++.+|+.+++.
T Consensus       354 ~~lSidDvke~lq  366 (554)
T KOG2028|consen  354 VLLSIDDVKEGLQ  366 (554)
T ss_pred             ceecHHHHHHHHh
Confidence            5788899999865

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.11  E-value=4.7e-11  Score=116.85  Aligned_cols=138  Identities=20%  Similarity=0.227  Sum_probs=84.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC-----CCccccCCccccccccceeecCccccceeeecceeeecCCceeecccccc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP-----RSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK  420 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p-----r~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk  420 (720)
                      .++||.||+|+|||.+++.+++.+-     +.+...+...+.....    ...........+|.+-.+++||+|+|||||
T Consensus         4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~----~~~~~~l~~~~~~~v~~~~~gVVllDEidK   79 (171)
T PF07724_consen    4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDV----ESSVSKLLGSPPGYVGAEEGGVVLLDEIDK   79 (171)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHC----SCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchH----HhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence            5899999999999999999999775     1111111111110000    000000111123444455678999999999


Q ss_pred             CCh-----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCc--------c----c--ccc
Q psy17703        421 MSD-----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSK--------T----I--IDN  475 (720)
Q Consensus       421 m~~-----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~--------~----~--~~~  475 (720)
                      +.+           ..|+.|+++||.++++..+ |.... -.++.+|+|+|-.........        .    .  .-.
T Consensus        80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~-g~~vd-~~n~ifI~Tsn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (171)
T PF07724_consen   80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSY-GRTVD-TSNIIFIMTSNFGAEEIIDASRSGEAIEQEQEEQIRDLVE  157 (171)
T ss_dssp             CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETT-CCEEE-GTTEEEEEEESSSTHHHHHCHHHCTCCHHHHCHHHHHHHH
T ss_pred             ccccccccchhhHHHHHHHHHHHhcccceeccc-ceEEE-eCCceEEEecccccchhhhhhccccccHHHHHHHHHHHHH
Confidence            999           9999999999999998633 43332 257999999995432111100        0    0  001


Q ss_pred             cCCChhhhccceeE
Q psy17703        476 IRLPHTLLSRFDLI  489 (720)
Q Consensus       476 ~~l~~aLlsRFdli  489 (720)
                      ..++|+|+.|||.|
T Consensus       158 ~~f~pEf~~Ri~~i  171 (171)
T PF07724_consen  158 YGFRPEFLGRIDVI  171 (171)
T ss_dssp             HTS-HHHHTTSSEE
T ss_pred             cCCCHHHHccCCcC
Confidence            14889999999854

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.10  E-value=4.2e-10  Score=124.28  Aligned_cols=191  Identities=19%  Similarity=0.258  Sum_probs=111.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcccc----ccccceeecCccccceeeecceeeecCCceeecccccc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSA----VGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK  420 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~----~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk  420 (720)
                      .-++||+||||||||++++++++.+....+.- .++..    .|.+....+     +....+   ......|+||||+|.
T Consensus       179 pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i-~~s~l~~k~~ge~~~~lr-----~lf~~A---~~~~P~ILfIDEID~  249 (398)
T PTZ00454        179 PRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV-VGSEFVQKYLGEGPRMVR-----DVFRLA---RENAPSIIFIDEVDS  249 (398)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhcCCCEEEE-ehHHHHHHhcchhHHHHH-----HHHHHH---HhcCCeEEEEECHhh
Confidence            35799999999999999999998765432211 00000    010000000     000000   011357999999998


Q ss_pred             CCh-----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cce
Q psy17703        421 MSD-----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFD  487 (720)
Q Consensus       421 m~~-----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFd  487 (720)
                      +..           ..+..+.+.+.+-      .|.  .-..++.+|+|+|...             .+++++++  |||
T Consensus       250 i~~~r~~~~~~~d~~~~r~l~~LL~~l------d~~--~~~~~v~VI~aTN~~d-------------~LDpAllR~GRfd  308 (398)
T PTZ00454        250 IATKRFDAQTGADREVQRILLELLNQM------DGF--DQTTNVKVIMATNRAD-------------TLDPALLRPGRLD  308 (398)
T ss_pred             hccccccccCCccHHHHHHHHHHHHHh------hcc--CCCCCEEEEEecCCch-------------hCCHHHcCCCccc
Confidence            632           2333455554321      111  0123577899999654             58999997  999


Q ss_pred             eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHH
Q psy17703        488 LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS  567 (720)
Q Consensus       488 li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla  567 (720)
                      ..+.+..|..+++...+..+.           .+..+.+.+.   .+.+.    . +       .-..|++.+.++++-|
T Consensus       309 ~~I~~~~P~~~~R~~Il~~~~-----------~~~~l~~dvd---~~~la----~-~-------t~g~sgaDI~~l~~eA  362 (398)
T PTZ00454        309 RKIEFPLPDRRQKRLIFQTIT-----------SKMNLSEEVD---LEDFV----S-R-------PEKISAADIAAICQEA  362 (398)
T ss_pred             EEEEeCCcCHHHHHHHHHHHH-----------hcCCCCcccC---HHHHH----H-H-------cCCCCHHHHHHHHHHH
Confidence            999888777665443333211           1111122111   11111    1 0       1124679999999999


Q ss_pred             HHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703        568 EAHAKMRYSETVEVQDVDEAWRLH  591 (720)
Q Consensus       568 ~A~A~l~~~~~V~~~Dv~~Ai~l~  591 (720)
                      ...|.-+.+..|+.+|+.+|++-.
T Consensus       363 ~~~A~r~~~~~i~~~df~~A~~~v  386 (398)
T PTZ00454        363 GMQAVRKNRYVILPKDFEKGYKTV  386 (398)
T ss_pred             HHHHHHcCCCccCHHHHHHHHHHH
Confidence            988888888999999999997753

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=99.09  E-value=2.9e-09  Score=122.78  Aligned_cols=184  Identities=19%  Similarity=0.165  Sum_probs=104.9

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCCCCccccCCc---------------cccccccceeecCc-cccceeeec--ceeeecC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKG---------------SSAVGLTAYITKDP-ETRQMVLQT--GALVLAD  409 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~---------------ss~~glta~~~~~~-~~~~~~~~~--G~l~lad  409 (720)
                      +||+|++|||||++++.+++.+.......+..               .....+.+...+.. ..++. ++.  .......
T Consensus        41 yLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReL-Ie~a~~~P~~gr  119 (830)
T PRK07003         41 YLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAAL-LERAVYAPVDAR  119 (830)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHH-HHHHHhccccCC
Confidence            58999999999999999999774321111100               01111111000000 00000 000  0001134


Q ss_pred             CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      ..|++|||++.|+...+++|+..||+-             +.++.||.++|...             +|+++++||| ..
T Consensus       120 ~KVIIIDEah~LT~~A~NALLKtLEEP-------------P~~v~FILaTtd~~-------------KIp~TIrSRC-q~  172 (830)
T PRK07003        120 FKVYMIDEVHMLTNHAFNAMLKTLEEP-------------PPHVKFILATTDPQ-------------KIPVTVLSRC-LQ  172 (830)
T ss_pred             ceEEEEeChhhCCHHHHHHHHHHHHhc-------------CCCeEEEEEECChh-------------hccchhhhhe-EE
Confidence            569999999999999999999999873             23345555665322             5889999999 58


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA  569 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A  569 (720)
                      |.|...+.++....|.             .....-...+++++.+.|.+..             ..+.|...+++.-+.+
T Consensus       173 f~Fk~Ls~eeIv~~L~-------------~Il~~EgI~id~eAL~lIA~~A-------------~GsmRdALsLLdQAia  226 (830)
T PRK07003        173 FNLKQMPAGHIVSHLE-------------RILGEERIAFEPQALRLLARAA-------------QGSMRDALSLTDQAIA  226 (830)
T ss_pred             EecCCcCHHHHHHHHH-------------HHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHHH
Confidence            8888776665433332             2222224457788887776431             1234666666543333


Q ss_pred             HHHHcCCCCCCHHhHHHHHH
Q psy17703        570 HAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       570 ~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      .    ..+.|+.+++...+.
T Consensus       227 ~----~~~~It~~~V~~~LG  242 (830)
T PRK07003        227 Y----SANEVTETAVSGMLG  242 (830)
T ss_pred             h----ccCCcCHHHHHHHhC
Confidence            2    234688877776543

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.09  E-value=3.6e-10  Score=134.80  Aligned_cols=184  Identities=17%  Similarity=0.208  Sum_probs=112.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCcc-------ccccccceeecCccccceeeecceeeecCCceeecccc
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGS-------SAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEF  418 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~s-------s~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEi  418 (720)
                      ++||+||||||||.+++++++.+..... .++...       ...|-..+.+.....+..   ..++.....+|++|||+
T Consensus       486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l---~~~~~~~p~~VvllDEi  562 (731)
T TIGR02639       486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLL---TEAVRKHPHCVLLLDEI  562 (731)
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHH---HHHHHhCCCeEEEEech
Confidence            5899999999999999999998853211 111110       001111111000000000   01122235689999999


Q ss_pred             ccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCC------Cccc----cc--ccCCChhhhccc
Q psy17703        419 DKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNT------SKTI----ID--NIRLPHTLLSRF  486 (720)
Q Consensus       419 dkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~------~~~~----~~--~~~l~~aLlsRF  486 (720)
                      ++++++.++.|+++|+++.++.. .|....+ .++.+|+|+|.-...+..      ....    ..  .-.++|+|++||
T Consensus       563 eka~~~~~~~Ll~~ld~g~~~d~-~g~~vd~-~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Ri  640 (731)
T TIGR02639       563 EKAHPDIYNILLQVMDYATLTDN-NGRKADF-RNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRL  640 (731)
T ss_pred             hhcCHHHHHHHHHhhccCeeecC-CCcccCC-CCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcC
Confidence            99999999999999999998753 3433322 368899999964221110      0000    00  124899999999


Q ss_pred             eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q psy17703        487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQT  539 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~  539 (720)
                      |-++.+.+...++..+.+...+.  .+.+.+  ....+.-.+++++.+.|.+.
T Consensus       641 d~Vi~F~pLs~e~l~~Iv~~~L~--~l~~~l--~~~~~~l~i~~~a~~~La~~  689 (731)
T TIGR02639       641 DAIIHFNPLSEEVLEKIVQKFVD--ELSKQL--NEKNIKLELTDDAKKYLAEK  689 (731)
T ss_pred             CeEEEcCCCCHHHHHHHHHHHHH--HHHHHH--HhCCCeEEeCHHHHHHHHHh
Confidence            99999999888777666554321  122222  22335667899999988864

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=3.3e-10  Score=116.78  Aligned_cols=198  Identities=16%  Similarity=0.239  Sum_probs=121.4

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCC-CCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVP-RSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~p-r~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      +..||||+||+|+|||.||+.+|+.+. +....+.+.-+.+|..+--+.+-..+-...--..+..|..||++||||||++
T Consensus        96 ~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIa  175 (408)
T COG1219          96 SKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIA  175 (408)
T ss_pred             eeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhh
Confidence            467999999999999999999999883 2223333333333332211110000001111245567889999999999986


Q ss_pred             hH--------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccC---CCCCCCCCccc-------------
Q psy17703        423 DT--------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP---CDSQWNTSKTI-------------  472 (720)
Q Consensus       423 ~~--------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp---~~g~~~~~~~~-------------  472 (720)
                      ..              .|.+|+..||--..++...|....-+..|.-+-|+|-   ++|.|++-..+             
T Consensus       176 rkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~  255 (408)
T COG1219         176 RKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFG  255 (408)
T ss_pred             ccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCccccc
Confidence            42              5889999999888888877766555566777777774   34433211100             


Q ss_pred             ---------------c--------cccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHH-hhcCCcc
Q psy17703        473 ---------------I--------DNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQ-EHLSPTL  528 (720)
Q Consensus       473 ---------------~--------~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar-~~~~p~l  528 (720)
                                     .        -.+.|-|.|.-|+.++..+.+.+.+..-+.|.+- ...+++.|-..-. ..+.-.+
T Consensus       256 a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILteP-kNAlvKQYq~Lf~~d~V~L~F  334 (408)
T COG1219         256 AEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEP-KNALVKQYQKLFEMDGVELEF  334 (408)
T ss_pred             ccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcc-cHHHHHHHHHHhcccCceEEE
Confidence                           0        0125678888888888777777666655444421 1234555543322 3455677


Q ss_pred             hHHHHHHHHHHHHH
Q psy17703        529 SEEASQRLIQTYVD  542 (720)
Q Consensus       529 s~ea~~~l~~~y~~  542 (720)
                      +++|...++....+
T Consensus       335 ~~~AL~~IA~~A~~  348 (408)
T COG1219         335 TEEALKAIAKKAIE  348 (408)
T ss_pred             cHHHHHHHHHHHHH
Confidence            88888887765543

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.08  E-value=4.3e-10  Score=123.62  Aligned_cols=188  Identities=22%  Similarity=0.262  Sum_probs=111.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeee---cCCceeeccccccCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVL---ADSGVCCIDEFDKMS  422 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~l---ad~gI~~IDEidkm~  422 (720)
                      .++||+||||||||++++++++.+....+.. ..+   .+.......   +....+ ..+..   ...+|+||||+|.+.
T Consensus       157 ~gvLL~GppGtGKT~lakaia~~l~~~~~~v-~~~---~l~~~~~g~---~~~~i~-~~f~~a~~~~p~il~iDEiD~l~  228 (364)
T TIGR01242       157 KGVLLYGPPGTGKTLLAKAVAHETNATFIRV-VGS---ELVRKYIGE---GARLVR-EIFELAKEKAPSIIFIDEIDAIA  228 (364)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhCCCCEEec-chH---HHHHHhhhH---HHHHHH-HHHHHHHhcCCcEEEhhhhhhhc
Confidence            3699999999999999999999775432211 000   010000000   000000 00011   134699999999873


Q ss_pred             -----------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeE
Q psy17703        423 -----------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLI  489 (720)
Q Consensus       423 -----------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli  489 (720)
                                 ...+..+.+.+.+-.      +.  .-..++.+|+|+|...             .+++++++  |||..
T Consensus       229 ~~~~~~~~~~~~~~~~~l~~ll~~ld------~~--~~~~~v~vI~ttn~~~-------------~ld~al~r~grfd~~  287 (364)
T TIGR01242       229 AKRTDSGTSGDREVQRTLMQLLAELD------GF--DPRGNVKVIAATNRPD-------------ILDPALLRPGRFDRI  287 (364)
T ss_pred             cccccCCCCccHHHHHHHHHHHHHhh------CC--CCCCCEEEEEecCChh-------------hCChhhcCcccCceE
Confidence                       233445555554311      10  1123678999999654             47888886  99988


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE  568 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~  568 (720)
                      +.+..|..++....+..|            ++. .+.+.+.   .+.+..    .   .     -..+.+.+.++++.|.
T Consensus       288 i~v~~P~~~~r~~Il~~~------------~~~~~l~~~~~---~~~la~----~---t-----~g~sg~dl~~l~~~A~  340 (364)
T TIGR01242       288 IEVPLPDFEGRLEILKIH------------TRKMKLAEDVD---LEAIAK----M---T-----EGASGADLKAICTEAG  340 (364)
T ss_pred             EEeCCcCHHHHHHHHHHH------------HhcCCCCccCC---HHHHHH----H---c-----CCCCHHHHHHHHHHHH
Confidence            888877766654444322            111 1111111   111111    0   1     1245699999999999


Q ss_pred             HHHHHcCCCCCCHHhHHHHHH
Q psy17703        569 AHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       569 A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      ..|..+.+..|+.+|+.+|+.
T Consensus       341 ~~a~~~~~~~i~~~d~~~a~~  361 (364)
T TIGR01242       341 MFAIREERDYVTMDDFIKAVE  361 (364)
T ss_pred             HHHHHhCCCccCHHHHHHHHH
Confidence            999888999999999999976

Many proteins may score above the trusted cutoff because an internal

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.08  E-value=2e-09  Score=121.40  Aligned_cols=185  Identities=16%  Similarity=0.177  Sum_probs=105.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCccccCC---------------ccccccccceeecCc-cccceeeecc-eeeecC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGK---------------GSSAVGLTAYITKDP-ETRQMVLQTG-ALVLAD  409 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~---------------~ss~~glta~~~~~~-~~~~~~~~~G-~l~lad  409 (720)
                      .+||+||||||||++|+.+++.+.......+.               ......+.++..+.. ..++..-... .-..++
T Consensus        38 ~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~  117 (472)
T PRK14962         38 AYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGK  117 (472)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCC
Confidence            37999999999999999999976432111110               001111111100000 0000000000 012345


Q ss_pred             CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEE-ecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSIL-AAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL  488 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~ii-aaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl  488 (720)
                      ..+++|||++.|+.+.+++|+..||+.             +..+.++ +++||.              .+++++.|||. 
T Consensus       118 ~kVvIIDE~h~Lt~~a~~~LLk~LE~p-------------~~~vv~Ilattn~~--------------kl~~~L~SR~~-  169 (472)
T PRK14962        118 YKVYIIDEVHMLTKEAFNALLKTLEEP-------------PSHVVFVLATTNLE--------------KVPPTIISRCQ-  169 (472)
T ss_pred             eEEEEEEChHHhHHHHHHHHHHHHHhC-------------CCcEEEEEEeCChH--------------hhhHHHhcCcE-
Confidence            679999999999999999999999862             1223444 444432              37899999996 


Q ss_pred             EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE  568 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~  568 (720)
                      ++.+..++.++....             +..+.+.-.-.+++++.+.|++..-             ...|.+..++..+.
T Consensus       170 vv~f~~l~~~el~~~-------------L~~i~~~egi~i~~eal~~Ia~~s~-------------GdlR~aln~Le~l~  223 (472)
T PRK14962        170 VIEFRNISDELIIKR-------------LQEVAEAEGIEIDREALSFIAKRAS-------------GGLRDALTMLEQVW  223 (472)
T ss_pred             EEEECCccHHHHHHH-------------HHHHHHHcCCCCCHHHHHHHHHHhC-------------CCHHHHHHHHHHHH
Confidence            677777766554322             3222222345789999988875321             12365555444322


Q ss_pred             HHHHHcCCCCCCHHhHHHHHH
Q psy17703        569 AHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       569 A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      +.   . ...++.+|+.+++.
T Consensus       224 ~~---~-~~~It~e~V~~~l~  240 (472)
T PRK14962        224 KF---S-EGKITLETVHEALG  240 (472)
T ss_pred             Hh---c-CCCCCHHHHHHHHc
Confidence            22   1 23599999998865

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=99.07  E-value=1.4e-09  Score=123.58  Aligned_cols=215  Identities=22%  Similarity=0.270  Sum_probs=139.0

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCc--c--ccCCccccccc---cceeecCccccceeeecceeeecCCceeecc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ--Y--TSGKGSSAVGL---TAYITKDPETRQMVLQTGALVLADSGVCCID  416 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~--~--~~g~~ss~~gl---ta~~~~~~~~~~~~~~~G~l~lad~gI~~ID  416 (720)
                      .++++++.|++||||+.++++++...++..  +  ..........+   ..+..+...++...-..|.+..+++|++|||
T Consensus       156 ~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~  235 (463)
T TIGR01818       156 SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLD  235 (463)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEE
Confidence            578999999999999999999999876531  1  11110000000   0000111122233335678889999999999


Q ss_pred             ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee-EEEecCC
Q psy17703        417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL-IFLLLDP  495 (720)
Q Consensus       417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl-i~~l~d~  495 (720)
                      |++.|+.+.|..|+++++++.+..  .|.....+.++.+|+|+|....      .....-.+.+.|+.|+.. .+.+++.
T Consensus       236 ei~~l~~~~q~~ll~~l~~~~~~~--~~~~~~~~~~~rii~~~~~~l~------~~~~~~~f~~~L~~rl~~~~i~lPpL  307 (463)
T TIGR01818       236 EIGDMPLDAQTRLLRVLADGEFYR--VGGRTPIKVDVRIVAATHQNLE------ALVRQGKFREDLFHRLNVIRIHLPPL  307 (463)
T ss_pred             chhhCCHHHHHHHHHHHhcCcEEE--CCCCceeeeeeEEEEeCCCCHH------HHHHcCCcHHHHHHHhCcceecCCCc
Confidence            999999999999999999888764  4555566677889999986531      112223577789999873 4555544


Q ss_pred             ChHHHHHHHHhhcchhHHHHHHHHHHhhc---CCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703        496 QSEQFDARLARHLDITVLRDYIAYAQEHL---SPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK  572 (720)
Q Consensus       496 ~~~~~d~~la~~i~~~~l~~~i~~ar~~~---~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~  572 (720)
                      .+...|  +.     .+++.|+..+....   .+.+++++.+.|..|            +||.+.|+|+.+++-+-..| 
T Consensus       308 r~R~~D--i~-----~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~------------~wpgNvreL~~~~~~~~~~~-  367 (463)
T TIGR01818       308 RERRED--IP-----RLARHFLALAARELDVEPKLLDPEALERLKQL------------RWPGNVRQLENLCRWLTVMA-  367 (463)
T ss_pred             ccchhh--HH-----HHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC------------CCCChHHHHHHHHHHHHHhC-
Confidence            432211  11     12334444333322   257999999988754            58888999999988765543 


Q ss_pred             HcCCCCCCHHhHHHHH
Q psy17703        573 MRYSETVEVQDVDEAW  588 (720)
Q Consensus       573 l~~~~~V~~~Dv~~Ai  588 (720)
                        ....++.+|+...+
T Consensus       368 --~~~~i~~~~l~~~~  381 (463)
T TIGR01818       368 --SGDEVLVSDLPAEL  381 (463)
T ss_pred             --CCCcccHHhchHHH
Confidence              23578888876554

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>KOG0989|consensus

Probab=99.06  E-value=2.1e-09  Score=110.79  Aligned_cols=152  Identities=18%  Similarity=0.260  Sum_probs=89.4

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCC-CccccCC----ccccccccceeecCcccccee----ee--cceeeecCCce
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPR-SQYTSGK----GSSAVGLTAYITKDPETRQMV----LQ--TGALVLADSGV  412 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr-~~~~~g~----~ss~~glta~~~~~~~~~~~~----~~--~G~l~lad~gI  412 (720)
                      .-.|.||+||||||||+.++++++.+.. ..+-++.    .+..-|..  +.+... ..+.    ..  .-.-+...-.|
T Consensus        56 ~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis--vvr~Ki-k~fakl~~~~~~~~~~~~~~fKi  132 (346)
T KOG0989|consen   56 ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS--VVREKI-KNFAKLTVLLKRSDGYPCPPFKI  132 (346)
T ss_pred             CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc--chhhhh-cCHHHHhhccccccCCCCCcceE
Confidence            3469999999999999999999986632 1111111    11111111  111110 0000    00  00011122368


Q ss_pred             eeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEe
Q psy17703        413 CCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLL  492 (720)
Q Consensus       413 ~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l  492 (720)
                      ++|||.|.|..+.|.+|+.+||....+           .+|.+|  +|-..             ++++++.||+- -|.+
T Consensus       133 iIlDEcdsmtsdaq~aLrr~mE~~s~~-----------trFiLI--cnyls-------------rii~pi~SRC~-KfrF  185 (346)
T KOG0989|consen  133 IILDECDSMTSDAQAALRRTMEDFSRT-----------TRFILI--CNYLS-------------RIIRPLVSRCQ-KFRF  185 (346)
T ss_pred             EEEechhhhhHHHHHHHHHHHhccccc-----------eEEEEE--cCChh-------------hCChHHHhhHH-HhcC
Confidence            999999999999999999999963221           234444  44222             69999999996 6777


Q ss_pred             cCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHH
Q psy17703        493 LDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQ  538 (720)
Q Consensus       493 ~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~  538 (720)
                      ....++..-.+|.             +....-.-.+.+++.+.|+.
T Consensus       186 k~L~d~~iv~rL~-------------~Ia~~E~v~~d~~al~~I~~  218 (346)
T KOG0989|consen  186 KKLKDEDIVDRLE-------------KIASKEGVDIDDDALKLIAK  218 (346)
T ss_pred             CCcchHHHHHHHH-------------HHHHHhCCCCCHHHHHHHHH
Confidence            7776654332322             22223355677888877763

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.06  E-value=6.7e-10  Score=123.53  Aligned_cols=192  Identities=17%  Similarity=0.199  Sum_probs=110.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeec---CCceeeccccccCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLA---DSGVCCIDEFDKMS  422 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~la---d~gI~~IDEidkm~  422 (720)
                      .++||+||||||||++++++++.+....+. -.++...+   .....   +...+ ...+..|   ...|+||||+|.+.
T Consensus       218 ~gVLL~GPPGTGKT~LAraIA~el~~~fi~-V~~seL~~---k~~Ge---~~~~v-r~lF~~A~~~~P~ILfIDEID~l~  289 (438)
T PTZ00361        218 KGVILYGPPGTGKTLLAKAVANETSATFLR-VVGSELIQ---KYLGD---GPKLV-RELFRVAEENAPSIVFIDEIDAIG  289 (438)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCCEEE-Eecchhhh---hhcch---HHHHH-HHHHHHHHhCCCcEEeHHHHHHHh
Confidence            479999999999999999999976532211 01111100   00000   00000 0001111   24689999998763


Q ss_pred             h-----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeE
Q psy17703        423 D-----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLI  489 (720)
Q Consensus       423 ~-----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli  489 (720)
                      .           +.+..+.+.+.+-      .|..  -..++.||+|+|...             .+++++++  |||..
T Consensus       290 ~kR~~~~sgg~~e~qr~ll~LL~~L------dg~~--~~~~V~VI~ATNr~d-------------~LDpaLlRpGRfd~~  348 (438)
T PTZ00361        290 TKRYDATSGGEKEIQRTMLELLNQL------DGFD--SRGDVKVIMATNRIE-------------SLDPALIRPGRIDRK  348 (438)
T ss_pred             ccCCCCCCcccHHHHHHHHHHHHHH------hhhc--ccCCeEEEEecCChH-------------HhhHHhccCCeeEEE
Confidence            2           2233444444321      1110  123578999999554             47889986  99999


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA  569 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A  569 (720)
                      +.+..|..+.+...+..|.         .  +..+.+.+.   .+.++    ...        -..|.+.+.++++-|.-
T Consensus       349 I~~~~Pd~~~R~~Il~~~~---------~--k~~l~~dvd---l~~la----~~t--------~g~sgAdI~~i~~eA~~  402 (438)
T PTZ00361        349 IEFPNPDEKTKRRIFEIHT---------S--KMTLAEDVD---LEEFI----MAK--------DELSGADIKAICTEAGL  402 (438)
T ss_pred             EEeCCCCHHHHHHHHHHHH---------h--cCCCCcCcC---HHHHH----Hhc--------CCCCHHHHHHHHHHHHH
Confidence            9998887766554444321         1  111111111   11111    111        12456889999998888


Q ss_pred             HHHHcCCCCCCHHhHHHHHHHHH
Q psy17703        570 HAKMRYSETVEVQDVDEAWRLHR  592 (720)
Q Consensus       570 ~A~l~~~~~V~~~Dv~~Ai~l~~  592 (720)
                      .|.-+.+..|+.+|+.+|++-..
T Consensus       403 ~Alr~~r~~Vt~~D~~~A~~~v~  425 (438)
T PTZ00361        403 LALRERRMKVTQADFRKAKEKVL  425 (438)
T ss_pred             HHHHhcCCccCHHHHHHHHHHHH
Confidence            88888899999999999988543

>CHL00176 ftsH cell division protein; Validated

Probab=99.05  E-value=1.2e-09  Score=127.00  Aligned_cols=191  Identities=21%  Similarity=0.240  Sum_probs=109.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCc-cccCCcc--ccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQ-YTSGKGS--SAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~-~~~g~~s--s~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      ..++||+||||||||.++++++..+.... +.++...  ...|..+...++     ....+   ......|+||||+|.+
T Consensus       216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~-----lF~~A---~~~~P~ILfIDEID~l  287 (638)
T CHL00176        216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRD-----LFKKA---KENSPCIVFIDEIDAV  287 (638)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHH-----HHHHH---hcCCCcEEEEecchhh
Confidence            35799999999999999999998763222 2211110  001111100000     00000   0112469999999987


Q ss_pred             Ch-----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--ccee
Q psy17703        422 SD-----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDL  488 (720)
Q Consensus       422 ~~-----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdl  488 (720)
                      ..           ..+..|...+.+-      .|.  .-+.++.+|||+|...             .++++|++  |||.
T Consensus       288 ~~~r~~~~~~~~~e~~~~L~~LL~~~------dg~--~~~~~ViVIaaTN~~~-------------~LD~ALlRpGRFd~  346 (638)
T CHL00176        288 GRQRGAGIGGGNDEREQTLNQLLTEM------DGF--KGNKGVIVIAATNRVD-------------ILDAALLRPGRFDR  346 (638)
T ss_pred             hhcccCCCCCCcHHHHHHHHHHHhhh------ccc--cCCCCeeEEEecCchH-------------hhhhhhhccccCce
Confidence            42           2233444444321      111  1134678999999654             47788987  9999


Q ss_pred             EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE  568 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~  568 (720)
                      .+.+..|+.+++...+..|+         ..     .+...+.....+..          .  ....+.+.|..+++-|.
T Consensus       347 ~I~v~lPd~~~R~~IL~~~l---------~~-----~~~~~d~~l~~lA~----------~--t~G~sgaDL~~lvneAa  400 (638)
T CHL00176        347 QITVSLPDREGRLDILKVHA---------RN-----KKLSPDVSLELIAR----------R--TPGFSGADLANLLNEAA  400 (638)
T ss_pred             EEEECCCCHHHHHHHHHHHH---------hh-----cccchhHHHHHHHh----------c--CCCCCHHHHHHHHHHHH
Confidence            99888887666555444332         11     11111112222210          0  11245699999998776


Q ss_pred             HHHHHcCCCCCCHHhHHHHHHH
Q psy17703        569 AHAKMRYSETVEVQDVDEAWRL  590 (720)
Q Consensus       569 A~A~l~~~~~V~~~Dv~~Ai~l  590 (720)
                      ..|.-+....++.+|+++|++-
T Consensus       401 l~a~r~~~~~It~~dl~~Ai~r  422 (638)
T CHL00176        401 ILTARRKKATITMKEIDTAIDR  422 (638)
T ss_pred             HHHHHhCCCCcCHHHHHHHHHH
Confidence            6666677788999999999864

>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]

Probab=99.05  E-value=5.6e-10  Score=125.31  Aligned_cols=208  Identities=21%  Similarity=0.252  Sum_probs=138.7

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCC---cc-------ccCCccccccccceeecCcccccee-eecceeeecCCce
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRS---QY-------TSGKGSSAVGLTAYITKDPETRQMV-LQTGALVLADSGV  412 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~---~~-------~~g~~ss~~glta~~~~~~~~~~~~-~~~G~l~lad~gI  412 (720)
                      .++++|+.|+|||||-.|+++++......   +.       .+..++..+|..++    ..+|.+. -..|.+..|++|.
T Consensus       335 ~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~G----afTga~~kG~~g~~~~A~gGt  410 (606)
T COG3284         335 TDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAG----AFTGARRKGYKGKLEQADGGT  410 (606)
T ss_pred             cCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCcc----ccccchhccccccceecCCCc
Confidence            68899999999999999999999866421   00       01112222222221    2222222 2357888999999


Q ss_pred             eeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEe
Q psy17703        413 CCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLL  492 (720)
Q Consensus       413 ~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l  492 (720)
                      +|+|||..|+-+.|..|+++++++.|+-  -|... .+.++.||+|++..      -..++++-.+...|+.|.. .+.+
T Consensus       411 lFldeIgd~p~~~Qs~LLrVl~e~~v~p--~g~~~-~~vdirvi~ath~d------l~~lv~~g~fredLyyrL~-~~~i  480 (606)
T COG3284         411 LFLDEIGDMPLALQSRLLRVLQEGVVTP--LGGTR-IKVDIRVIAATHRD------LAQLVEQGRFREDLYYRLN-AFVI  480 (606)
T ss_pred             cHHHHhhhchHHHHHHHHHHHhhCceec--cCCcc-eeEEEEEEeccCcC------HHHHHHcCCchHHHHHHhc-Ceee
Confidence            9999999999999999999999999874  67666 89999999999943      2345666678899999987 3333


Q ss_pred             cCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703        493 LDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK  572 (720)
Q Consensus       493 ~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~  572 (720)
                      .-|+-.++...+      ..|..|...-. ...-.+++++...|..+            .||.+.|+|.++++.+-+++ 
T Consensus       481 ~lP~lr~R~d~~------~~l~~~~~~~~-~~~~~l~~~~~~~l~~~------------~WPGNirel~~v~~~~~~l~-  540 (606)
T COG3284         481 TLPPLRERSDRI------PLLDRILKREN-DWRLQLDDDALARLLAY------------RWPGNIRELDNVIERLAALS-  540 (606)
T ss_pred             ccCchhcccccH------HHHHHHHHHcc-CCCccCCHHHHHHHHhC------------CCCCcHHHHHHHHHHHHHcC-
Confidence            333333322221      12322222111 13457889998888754            58999999999998776543 


Q ss_pred             HcCCCCCCHHhHHHH
Q psy17703        573 MRYSETVEVQDVDEA  587 (720)
Q Consensus       573 l~~~~~V~~~Dv~~A  587 (720)
                        ....+...|+...
T Consensus       541 --~~g~~~~~dlp~~  553 (606)
T COG3284         541 --DGGRIRVSDLPPE  553 (606)
T ss_pred             --CCCeeEcccCCHH
Confidence              3334555555444

>PRK13342 recombination factor protein RarA; Reviewed

Probab=99.05  E-value=1.9e-09  Score=120.40  Aligned_cols=177  Identities=22%  Similarity=0.297  Sum_probs=106.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCccccccccceeecCccccceeeec-ceeeecCCceeeccccccCCh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGSSAVGLTAYITKDPETRQMVLQT-GALVLADSGVCCIDEFDKMSD  423 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~ss~~glta~~~~~~~~~~~~~~~-G~l~lad~gI~~IDEidkm~~  423 (720)
                      .|++|+||||||||++++.+++.+....+. +... ...    ...     ....... .......+.+++|||+++++.
T Consensus        37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~-~~~----~~i-----r~ii~~~~~~~~~g~~~vL~IDEi~~l~~  106 (413)
T PRK13342         37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT-SGV----KDL-----REVIEEARQRRSAGRRTILFIDEIHRFNK  106 (413)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc-ccH----HHH-----HHHHHHHHHhhhcCCceEEEEechhhhCH
Confidence            489999999999999999999866432211 1110 000    000     0000000 000112467999999999999


Q ss_pred             HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecc--cCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHH
Q psy17703        424 TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAA--NPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFD  501 (720)
Q Consensus       424 ~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaa--Np~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d  501 (720)
                      ..+++|+..||++.+               .+++++  ||..             .++++|+||| .++.+..++.++..
T Consensus       107 ~~q~~LL~~le~~~i---------------ilI~att~n~~~-------------~l~~aL~SR~-~~~~~~~ls~e~i~  157 (413)
T PRK13342        107 AQQDALLPHVEDGTI---------------TLIGATTENPSF-------------EVNPALLSRA-QVFELKPLSEEDIE  157 (413)
T ss_pred             HHHHHHHHHhhcCcE---------------EEEEeCCCChhh-------------hccHHHhccc-eeeEeCCCCHHHHH
Confidence            999999999987543               344443  3322             5789999999 57778877766544


Q ss_pred             HHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCH
Q psy17703        502 ARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEV  581 (720)
Q Consensus       502 ~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~  581 (720)
                      ..+.+         .+......+ ..+++++.+.+....             ...+|.+..++..+...     ...++.
T Consensus       158 ~lL~~---------~l~~~~~~~-i~i~~~al~~l~~~s-------------~Gd~R~aln~Le~~~~~-----~~~It~  209 (413)
T PRK13342        158 QLLKR---------ALEDKERGL-VELDDEALDALARLA-------------NGDARRALNLLELAALG-----VDSITL  209 (413)
T ss_pred             HHHHH---------HHHHhhcCC-CCCCHHHHHHHHHhC-------------CCCHHHHHHHHHHHHHc-----cCCCCH
Confidence            33332         111111111 257888877776431             12357777766654332     467888


Q ss_pred             HhHHHHHH
Q psy17703        582 QDVDEAWR  589 (720)
Q Consensus       582 ~Dv~~Ai~  589 (720)
                      +++.+++.
T Consensus       210 ~~v~~~~~  217 (413)
T PRK13342        210 ELLEEALQ  217 (413)
T ss_pred             HHHHHHHh
Confidence            88888765

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.03  E-value=1e-09  Score=132.05  Aligned_cols=202  Identities=14%  Similarity=0.182  Sum_probs=119.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCccccccccceeecCccccceeeeccee----eecCCceeecccc
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLTAYITKDPETRQMVLQTGAL----VLADSGVCCIDEF  418 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l----~lad~gI~~IDEi  418 (720)
                      .+||+||||+|||.+++++++.+-..    +...+......+........+....-.-+.|.+    -....+|++||||
T Consensus       598 ~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEi  677 (852)
T TIGR03345       598 VFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEV  677 (852)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEech
Confidence            48999999999999999999976211    111111000000000000010000000122222    1234679999999


Q ss_pred             ccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCC-----C-----ccccc------ccCCChhh
Q psy17703        419 DKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNT-----S-----KTIID------NIRLPHTL  482 (720)
Q Consensus       419 dkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~-----~-----~~~~~------~~~l~~aL  482 (720)
                      +|++++.++.|+++|+++.++.. .|....+. ++.+|.|+|--...|..     .     ..+..      .-.|+|+|
T Consensus       678 eka~~~v~~~Llq~ld~g~l~d~-~Gr~vd~~-n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEf  755 (852)
T TIGR03345       678 EKAHPDVLELFYQVFDKGVMEDG-EGREIDFK-NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAF  755 (852)
T ss_pred             hhcCHHHHHHHHHHhhcceeecC-CCcEEecc-ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHH
Confidence            99999999999999999998753 45554443 68999999964443321     0     00011      01489999


Q ss_pred             hccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHH
Q psy17703        483 LSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLE  561 (720)
Q Consensus       483 lsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le  561 (720)
                      ++|++ ++.+.+...++..+.+...+..  +.+.  ++.+ .+.-.+++++.+.|.+.....+          .-.|.|.
T Consensus       756 lnRi~-iI~F~pLs~e~l~~Iv~~~L~~--l~~r--l~~~~gi~l~i~d~a~~~La~~g~~~~----------~GAR~L~  820 (852)
T TIGR03345       756 LGRMT-VIPYLPLDDDVLAAIVRLKLDR--IARR--LKENHGAELVYSEALVEHIVARCTEVE----------SGARNID  820 (852)
T ss_pred             hccee-EEEeCCCCHHHHHHHHHHHHHH--HHHH--HHHhcCceEEECHHHHHHHHHHcCCCC----------CChHHHH
Confidence            99999 7788888777776665544311  1111  2222 4566789999999886543211          1137777


Q ss_pred             HHHH
Q psy17703        562 SLIR  565 (720)
Q Consensus       562 ~lir  565 (720)
                      .+++
T Consensus       821 r~Ie  824 (852)
T TIGR03345       821 AILN  824 (852)
T ss_pred             HHHH
Confidence            7664

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.02  E-value=1.6e-09  Score=123.79  Aligned_cols=187  Identities=23%  Similarity=0.253  Sum_probs=105.7

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCc--cccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKG--SSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~--ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      .++||+||||||||++++++++.+....+ .++..  +...|.+....++     ....+   .....+|+||||+|.+.
T Consensus        89 ~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~-----~f~~a---~~~~p~Il~iDEid~l~  160 (495)
T TIGR01241        89 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRD-----LFEQA---KKNAPCIIFIDEIDAVG  160 (495)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHH-----HHHHH---HhcCCCEEEEechhhhh
Confidence            46999999999999999999987643322 11110  0001111110000     00000   01135799999999875


Q ss_pred             hHH--------------HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cc
Q psy17703        423 DTT--------------RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RF  486 (720)
Q Consensus       423 ~~~--------------~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RF  486 (720)
                      ...              .+.|+..|+.         .  .-+.++.||||+|+..             .++++|++  ||
T Consensus       161 ~~r~~~~~~~~~~~~~~~~~lL~~~d~---------~--~~~~~v~vI~aTn~~~-------------~ld~al~r~gRf  216 (495)
T TIGR01241       161 RQRGAGLGGGNDEREQTLNQLLVEMDG---------F--GTNTGVIVIAATNRPD-------------VLDPALLRPGRF  216 (495)
T ss_pred             hccccCcCCccHHHHHHHHHHHhhhcc---------c--cCCCCeEEEEecCChh-------------hcCHHHhcCCcc
Confidence            321              1122333321         0  1123578999999765             58899997  99


Q ss_pred             eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703        487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL  566 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl  566 (720)
                      |..+.+..|+.+++.+.+..++            +. .... ++...+.+.+     +       ....+.+.++.+++-
T Consensus       217 d~~i~i~~Pd~~~R~~il~~~l------------~~-~~~~-~~~~l~~la~-----~-------t~G~sgadl~~l~~e  270 (495)
T TIGR01241       217 DRQVVVDLPDIKGREEILKVHA------------KN-KKLA-PDVDLKAVAR-----R-------TPGFSGADLANLLNE  270 (495)
T ss_pred             eEEEEcCCCCHHHHHHHHHHHH------------hc-CCCC-cchhHHHHHH-----h-------CCCCCHHHHHHHHHH
Confidence            9998888887666554444321            11 1100 1111111111     0       112456888888887


Q ss_pred             HHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703        567 SEAHAKMRYSETVEVQDVDEAWRL  590 (720)
Q Consensus       567 a~A~A~l~~~~~V~~~Dv~~Ai~l  590 (720)
                      |...|.-+.+..++.+|+.+|+.-
T Consensus       271 A~~~a~~~~~~~i~~~~l~~a~~~  294 (495)
T TIGR01241       271 AALLAARKNKTEITMNDIEEAIDR  294 (495)
T ss_pred             HHHHHHHcCCCCCCHHHHHHHHHH
Confidence            666665666778999999998774

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.02  E-value=2.3e-09  Score=129.37  Aligned_cols=187  Identities=16%  Similarity=0.159  Sum_probs=112.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC----CccccCCccccccccceeecCccccceeeecc----eeeecCCceeecccc
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR----SQYTSGKGSSAVGLTAYITKDPETRQMVLQTG----ALVLADSGVCCIDEF  418 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr----~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G----~l~lad~gI~~IDEi  418 (720)
                      .+||+||||+|||.+++++++.+-.    .+...+...............+....-.-+.|    ++......|+++||+
T Consensus       541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDei  620 (821)
T CHL00095        541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEI  620 (821)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECCh
Confidence            4799999999999999999997631    11111110000000000000000000000111    112233479999999


Q ss_pred             ccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCC---------CCCCCc------c---ccc------
Q psy17703        419 DKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDS---------QWNTSK------T---IID------  474 (720)
Q Consensus       419 dkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g---------~~~~~~------~---~~~------  474 (720)
                      ++++++.++.|+++||++.++..+ |....+ .++.+|.|+|--..         +|....      .   +.+      
T Consensus       621 eka~~~v~~~Llq~le~g~~~d~~-g~~v~~-~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~  698 (821)
T CHL00095        621 EKAHPDIFNLLLQILDDGRLTDSK-GRTIDF-KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEEL  698 (821)
T ss_pred             hhCCHHHHHHHHHHhccCceecCC-CcEEec-CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHH
Confidence            999999999999999999988644 444444 47999999995321         121100      0   000      


Q ss_pred             ccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q psy17703        475 NIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQT  539 (720)
Q Consensus       475 ~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~  539 (720)
                      .-.++|+|++|+|-++.+.+...++..+.+...+.  .+.+.+  +.+.+.-.+++++.+.|.+.
T Consensus       699 ~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~--~l~~rl--~~~~i~l~~~~~~~~~La~~  759 (821)
T CHL00095        699 KQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLK--NLFKRL--NEQGIQLEVTERIKTLLIEE  759 (821)
T ss_pred             HHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHH--HHHHHH--HHCCcEEEECHHHHHHHHHh
Confidence            01489999999999999999988877666554331  122222  33456778899999988764

>KOG0738|consensus

Probab=99.02  E-value=7.3e-10  Score=116.92  Aligned_cols=126  Identities=25%  Similarity=0.273  Sum_probs=78.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeeccee-----eec---CCceeeccc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGAL-----VLA---DSGVCCIDE  417 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l-----~la---d~gI~~IDE  417 (720)
                      --||++||||||||+||++|+....-..|.    .++..++.         .|.-+.-.+     .+|   ...++||||
T Consensus       246 kgvLm~GPPGTGKTlLAKAvATEc~tTFFN----VSsstltS---------KwRGeSEKlvRlLFemARfyAPStIFiDE  312 (491)
T KOG0738|consen  246 KGVLMVGPPGTGKTLLAKAVATECGTTFFN----VSSSTLTS---------KWRGESEKLVRLLFEMARFYAPSTIFIDE  312 (491)
T ss_pred             ceeeeeCCCCCcHHHHHHHHHHhhcCeEEE----echhhhhh---------hhccchHHHHHHHHHHHHHhCCceeehhh
Confidence            479999999999999999999765421111    11111211         111111111     111   257899999


Q ss_pred             cccCC------------hHHHHHHHHHHHhceEeeeccCeEEeec--CceEEEecccCCCCCCCCCcccccccCCChhhh
Q psy17703        418 FDKMS------------DTTRSILHEVMEQQTLSIAKAGIICQLN--ARTSILAAANPCDSQWNTSKTIIDNIRLPHTLL  483 (720)
Q Consensus       418 idkm~------------~~~~~~L~e~mE~~~vsi~k~g~~~~l~--a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLl  483 (720)
                      ||.+-            ....+-|+--|+         |...++.  ..+.|+||+|-++             +|+.||+
T Consensus       313 IDslcs~RG~s~EHEaSRRvKsELLvQmD---------G~~~t~e~~k~VmVLAATN~PW-------------diDEAlr  370 (491)
T KOG0738|consen  313 IDSLCSQRGGSSEHEASRRVKSELLVQMD---------GVQGTLENSKVVMVLAATNFPW-------------DIDEALR  370 (491)
T ss_pred             HHHHHhcCCCccchhHHHHHHHHHHHHhh---------ccccccccceeEEEEeccCCCc-------------chHHHHH
Confidence            98863            223445555553         3333333  3588999999877             6899999


Q ss_pred             ccceeEEEecCCChHHHHHHHHh
Q psy17703        484 SRFDLIFLLLDPQSEQFDARLAR  506 (720)
Q Consensus       484 sRFdli~~l~d~~~~~~d~~la~  506 (720)
                      +||.-.+.++-|..+.+...|..
T Consensus       371 RRlEKRIyIPLP~~~~R~~Li~~  393 (491)
T KOG0738|consen  371 RRLEKRIYIPLPDAEARSALIKI  393 (491)
T ss_pred             HHHhhheeeeCCCHHHHHHHHHH
Confidence            99997777777766665544443

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.01  E-value=6.4e-09  Score=122.15  Aligned_cols=150  Identities=21%  Similarity=0.215  Sum_probs=88.7

Q ss_pred             cE-EEEcCCCCHHHHHHHHHHhhCCCCccccCC---------------cccccccccee-ecCccccc----eeeeccee
Q psy17703        347 NI-LLCGDPGTSKSQLLSYVYDLVPRSQYTSGK---------------GSSAVGLTAYI-TKDPETRQ----MVLQTGAL  405 (720)
Q Consensus       347 ~v-LL~G~PGtGKS~ll~~va~~~pr~~~~~g~---------------~ss~~glta~~-~~~~~~~~----~~~~~G~l  405 (720)
                      |. ||+||||||||++++.+++.+.......+.               ......+.+.. .+-...++    ....+   
T Consensus        39 HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P---  115 (944)
T PRK14949         39 HAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRP---  115 (944)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhh---
Confidence            54 899999999999999999987543111110               00001011110 00000011    11111   


Q ss_pred             eecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcc
Q psy17703        406 VLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSR  485 (720)
Q Consensus       406 ~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsR  485 (720)
                      ......|++|||+++|+.+.+++|+..||+-             |..+.+|.++|...             .|+++++||
T Consensus       116 ~~gk~KViIIDEAh~LT~eAqNALLKtLEEP-------------P~~vrFILaTTe~~-------------kLl~TIlSR  169 (944)
T PRK14949        116 SRGRFKVYLIDEVHMLSRSSFNALLKTLEEP-------------PEHVKFLLATTDPQ-------------KLPVTVLSR  169 (944)
T ss_pred             hcCCcEEEEEechHhcCHHHHHHHHHHHhcc-------------CCCeEEEEECCCch-------------hchHHHHHh
Confidence            1123569999999999999999999999963             23334444444221             478999999


Q ss_pred             ceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q psy17703        486 FDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQT  539 (720)
Q Consensus       486 Fdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~  539 (720)
                      + .+|.+...+.++.             ++|+...-..-...+++++.+.|...
T Consensus       170 C-q~f~fkpLs~eEI-------------~~~L~~il~~EgI~~edeAL~lIA~~  209 (944)
T PRK14949        170 C-LQFNLKSLTQDEI-------------GTQLNHILTQEQLPFEAEALTLLAKA  209 (944)
T ss_pred             h-eEEeCCCCCHHHH-------------HHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            9 5788888776654             33333332222456788888887643

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=1.6e-09  Score=125.85  Aligned_cols=190  Identities=17%  Similarity=0.174  Sum_probs=118.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC----CccccCCccccccccceeecCccccceeeecceeeec----CCceeecccc
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR----SQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLA----DSGVCCIDEF  418 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr----~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~la----d~gI~~IDEi  418 (720)
                      ..||.||+|+|||.|++++|..+-.    .+...+.+...-+........+....-.-+.|.|.-+    .-.|+++|||
T Consensus       523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEI  602 (786)
T COG0542         523 SFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEI  602 (786)
T ss_pred             EEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechh
Confidence            7899999999999999999997742    1112222111111111111111111111223433322    2469999999


Q ss_pred             ccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCC------C---CCCcccccc------cCCChhhh
Q psy17703        419 DKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQ------W---NTSKTIIDN------IRLPHTLL  483 (720)
Q Consensus       419 dkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~------~---~~~~~~~~~------~~l~~aLl  483 (720)
                      .|.+++..+.|+++|++++.+-.+. .... -.++.||.|+|--...      .   ...+...+.      -.++|+|+
T Consensus       603 EKAHpdV~nilLQVlDdGrLTD~~G-r~Vd-FrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFL  680 (786)
T COG0542         603 EKAHPDVFNLLLQVLDDGRLTDGQG-RTVD-FRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFL  680 (786)
T ss_pred             hhcCHHHHHHHHHHhcCCeeecCCC-CEEe-cceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHH
Confidence            9999999999999999999986443 2222 2468899999943111      0   001111111      16899999


Q ss_pred             ccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH
Q psy17703        484 SRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVD  542 (720)
Q Consensus       484 sRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~  542 (720)
                      +|+|-++.+.+...+...+++...+  ..+.+.+.  ++.+.-.+++++.+.|.+...+
T Consensus       681 NRid~II~F~~L~~~~l~~Iv~~~L--~~l~~~L~--~~~i~l~~s~~a~~~l~~~gyd  735 (786)
T COG0542         681 NRIDEIIPFNPLSKEVLERIVDLQL--NRLAKRLA--ERGITLELSDEAKDFLAEKGYD  735 (786)
T ss_pred             hhcccEEeccCCCHHHHHHHHHHHH--HHHHHHHH--hCCceEEECHHHHHHHHHhccC
Confidence            9999999998888776665555432  22333333  4567888999999999876543

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=99.00  E-value=2.7e-09  Score=112.19  Aligned_cols=204  Identities=16%  Similarity=0.214  Sum_probs=115.3

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCC---ceeecccccc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADS---GVCCIDEFDK  420 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~---gI~~IDEidk  420 (720)
                      .+.|+||+||+|||||.+++...+.++...|....-......++..++.........+.|...-+.+   -|+|||+++-
T Consensus        32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~  111 (272)
T PF12775_consen   32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNM  111 (272)
T ss_dssp             CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-
T ss_pred             cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCC
Confidence            5789999999999999999988776654432211111111112221221111122223333332222   3899999976


Q ss_pred             CChH------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecC
Q psy17703        421 MSDT------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLD  494 (720)
Q Consensus       421 m~~~------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d  494 (720)
                      -.++      ..+.|++.|+.+-+.-.+......+ .++.++||+||..|+          ..+++.|++.|- ++.+..
T Consensus       112 p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i-~~i~~vaa~~p~~Gr----------~~is~R~~r~f~-i~~~~~  179 (272)
T PF12775_consen  112 PQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSI-EDIQFVAAMNPTGGR----------NPISPRFLRHFN-ILNIPY  179 (272)
T ss_dssp             S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEE-CSEEEEEEESSTTT------------SHHHHHHTTEE-EEE---
T ss_pred             CCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEE-eeeEEEEecCCCCCC----------CCCChHHhhheE-EEEecC
Confidence            5533      3578999999988775443333333 468999999997654          147899999996 666666


Q ss_pred             CChHHHHHHHHhhcchhHHHHHHHHHH--hhcCCcchHHHHHHHHHHHHHhhhcCC---CCCCcccCHHHHHHHHH
Q psy17703        495 PQSEQFDARLARHLDITVLRDYIAYAQ--EHLSPTLSEEASQRLIQTYVDMRKLGA---GRGRISAYPRQLESLIR  565 (720)
Q Consensus       495 ~~~~~~d~~la~~i~~~~l~~~i~~ar--~~~~p~ls~ea~~~l~~~y~~lr~~~~---~~~~~~~t~R~le~lir  565 (720)
                      |.++....+...     .+..++....  ..+ ..+.+....+.++.|..++..-.   .+.+...++|.+.++++
T Consensus       180 p~~~sl~~If~~-----il~~~l~~~~f~~~v-~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlRDlsrv~q  249 (272)
T PF12775_consen  180 PSDESLNTIFSS-----ILQSHLKNGGFPEDV-QKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLRDLSRVFQ  249 (272)
T ss_dssp             -TCCHHHHHHHH-----HHHHHTCHTTSSGGG-CCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHHHHHHHHH
T ss_pred             CChHHHHHHHHH-----HHhhhcccCCCChHH-HHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHHHHHHHHH
Confidence            666655444332     2333322111  111 23456677788888888776432   24567777888877765

>KOG0990|consensus

Probab=98.99  E-value=7.8e-10  Score=114.45  Aligned_cols=269  Identities=16%  Similarity=0.124  Sum_probs=140.9

Q ss_pred             cCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccc-----cceeee--cceeee-cCCce
Q psy17703        341 ETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPET-----RQMVLQ--TGALVL-ADSGV  412 (720)
Q Consensus       341 E~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~-----~~~~~~--~G~l~l-ad~gI  412 (720)
                      +.++--|.|++||||||||....+.++.+...   .+..+....+.++.-++...     ..+...  +-.+.. +.-..
T Consensus        58 ~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~---~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKl  134 (360)
T KOG0990|consen   58 GMPGLPHLLFYGPPGTGKTSTILANARDFYSP---HPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKL  134 (360)
T ss_pred             cCCCCCcccccCCCCCCCCCchhhhhhhhcCC---CCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeE
Confidence            33444599999999999999999999877542   11222222232222111110     001000  011111 13457


Q ss_pred             eeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEe
Q psy17703        413 CCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLL  492 (720)
Q Consensus       413 ~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l  492 (720)
                      +++||.|.|..+.|++|+++.|+.+..             +.+.--+|+..             .+.|++++||. .|.+
T Consensus       135 vILDEADaMT~~AQnALRRviek~t~n-------------~rF~ii~n~~~-------------ki~pa~qsRct-rfrf  187 (360)
T KOG0990|consen  135 VILDEADAMTRDAQNALRRVIEKYTAN-------------TRFATISNPPQ-------------KIHPAQQSRCT-RFRF  187 (360)
T ss_pred             EEecchhHhhHHHHHHHHHHHHHhccc-------------eEEEEeccChh-------------hcCchhhcccc-cCCC
Confidence            899999999999999999987765433             33333345443             57899999996 5666


Q ss_pred             cCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703        493 LDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK  572 (720)
Q Consensus       493 ~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~  572 (720)
                      .+.+-.....++..++..+             +                           ...++-...++.|++     
T Consensus       188 ~pl~~~~~~~r~shi~e~e-------------~---------------------------~~~~~~~~~a~~r~s-----  222 (360)
T KOG0990|consen  188 APLTMAQQTERQSHIRESE-------------Q---------------------------KETNPEGYSALGRLS-----  222 (360)
T ss_pred             CCCChhhhhhHHHHHHhcc-------------h---------------------------hhcCHHHHHHHHHHh-----
Confidence            5554333322333221111             1                           112222222333332     


Q ss_pred             HcCCCCCCHHhHHHHHHHHHHHHHHhc-cCCCCCcceeeeeccCCCHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHH
Q psy17703        573 MRYSETVEVQDVDEAWRLHREALKQSA-TDPLSGKIDVSILTTGVSSAARQRQLELTAALKKLVILLGPSVTVTQQKLIM  651 (720)
Q Consensus       573 l~~~~~V~~~Dv~~Ai~l~~~~l~~~~-~d~~~g~~d~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~  651 (720)
                              .+|++.|+..++.+..... .+|.+--.|..+...|.....     ++.+.+++++.........+.+++..
T Consensus       223 --------~gDmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g~p~~~-----dI~~I~~~il~~~~~~~~~~is~lk~  289 (360)
T KOG0990|consen  223 --------VGDMRVALNYLQSILKKVMERKELNNPNDLVYQCKGAPQPS-----DIRQIIEKRMNGEDIELMLDDSELKK  289 (360)
T ss_pred             --------HHHHHHHHHHHHHHHHHhCCCCCCCCchhhHHHhcCCCChh-----HHHHHHHHHhcCchHHHHhhhhhhhh
Confidence                    6788999998887776654 344431122223335555332     35555555544322111222222222


Q ss_pred             HHhhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecce
Q psy17703        652 DLKGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGI  697 (720)
Q Consensus       652 ~~~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~  697 (720)
                      ..+.+.........-+-...+++..++..|..-|...++.+++|+-
T Consensus       290 ~~gla~~d~i~~l~~~~~~~~~~~~~~~~I~~~l~~Ie~~ls~g~~  335 (360)
T KOG0990|consen  290 PKGLARQDRRAELEQRFAIVISKTPVEGHILYQLADIEERLSKGCM  335 (360)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHhHHHHHHHHhcchh
Confidence            2222211111111111122345557788999999999999999874

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=98.99  E-value=3.5e-09  Score=128.23  Aligned_cols=203  Identities=19%  Similarity=0.182  Sum_probs=119.1

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCccccccccceeecCccccce-eeeccee----eecCCceeecc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLTAYITKDPETRQM-VLQTGAL----VLADSGVCCID  416 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glta~~~~~~~~~~~-~~~~G~l----~lad~gI~~ID  416 (720)
                      ..+||+||||||||.+|+++++.+.+.    ++..+...............+. +-. ..+.|.+    ......|+++|
T Consensus       596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~-g~~g~~~~g~l~~~v~~~p~~vlllD  674 (852)
T TIGR03346       596 GSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPP-GYVGYEEGGQLTEAVRRKPYSVVLFD  674 (852)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCC-CccCcccccHHHHHHHcCCCcEEEEe
Confidence            369999999999999999999976321    1111111000000000000000 000 0011221    12234699999


Q ss_pred             ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCC------Ccccc------cccCCChhhhc
Q psy17703        417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNT------SKTII------DNIRLPHTLLS  484 (720)
Q Consensus       417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~------~~~~~------~~~~l~~aLls  484 (720)
                      |+++++++.++.|+++|+++.++.. .|....+ .++.||+|+|--...+..      ...+.      -.-.++|.|+.
T Consensus       675 eieka~~~v~~~Ll~~l~~g~l~d~-~g~~vd~-rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~  752 (852)
T TIGR03346       675 EVEKAHPDVFNVLLQVLDDGRLTDG-QGRTVDF-RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN  752 (852)
T ss_pred             ccccCCHHHHHHHHHHHhcCceecC-CCeEEec-CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc
Confidence            9999999999999999999998853 3444443 358899999963221111      00110      12258999999


Q ss_pred             cceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHH
Q psy17703        485 RFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLI  564 (720)
Q Consensus       485 RFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~li  564 (720)
                      |+|-++.+.++..+.....+...+  ..+.+.+  ....+...+++++.+.|.++-.+          .+...|.|..++
T Consensus       753 Rid~IivF~PL~~e~l~~I~~l~L--~~l~~~l--~~~~~~l~i~~~a~~~L~~~~~~----------~~~gaR~L~~~i  818 (852)
T TIGR03346       753 RIDEIVVFHPLGREQIARIVEIQL--GRLRKRL--AERKITLELSDAALDFLAEAGYD----------PVYGARPLKRAI  818 (852)
T ss_pred             CcCeEEecCCcCHHHHHHHHHHHH--HHHHHHH--HHCCCeecCCHHHHHHHHHhCCC----------CCCCchhHHHHH
Confidence            999999998888776655544322  2222222  22345678999999998865221          112247777766


Q ss_pred             H
Q psy17703        565 R  565 (720)
Q Consensus       565 r  565 (720)
                      +
T Consensus       819 ~  819 (852)
T TIGR03346       819 Q  819 (852)
T ss_pred             H
Confidence            5

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.97  E-value=1.6e-08  Score=111.14  Aligned_cols=185  Identities=18%  Similarity=0.195  Sum_probs=104.7

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCCCCccccCCc---------------ccccccccee-ecCccccceeeecce-eeecCC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKG---------------SSAVGLTAYI-TKDPETRQMVLQTGA-LVLADS  410 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~---------------ss~~glta~~-~~~~~~~~~~~~~G~-l~lad~  410 (720)
                      +||+||||+|||++++.+++.+.......+..               .....+.++. .+-....+..-.... -..++.
T Consensus        41 ~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~  120 (363)
T PRK14961         41 WLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRF  120 (363)
T ss_pred             EEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCc
Confidence            69999999999999999999764211000000               0000000000 000000000000000 012345


Q ss_pred             ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703        411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF  490 (720)
Q Consensus       411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~  490 (720)
                      .+++|||+++|+...+++|+..||+-             |..+.+|.++|-..             .+++++.||+ ..+
T Consensus       121 kviIIDEa~~l~~~a~naLLk~lEe~-------------~~~~~fIl~t~~~~-------------~l~~tI~SRc-~~~  173 (363)
T PRK14961        121 KVYLIDEVHMLSRHSFNALLKTLEEP-------------PQHIKFILATTDVE-------------KIPKTILSRC-LQF  173 (363)
T ss_pred             eEEEEEChhhcCHHHHHHHHHHHhcC-------------CCCeEEEEEcCChH-------------hhhHHHHhhc-eEE
Confidence            69999999999999999999999863             22333444443211             4889999999 577


Q ss_pred             EecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703        491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH  570 (720)
Q Consensus       491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~  570 (720)
                      .+.+++.++..             +++...-+.....+++++.+.+....             ..++|....++.-+.+ 
T Consensus       174 ~~~~l~~~el~-------------~~L~~~~~~~g~~i~~~al~~ia~~s-------------~G~~R~al~~l~~~~~-  226 (363)
T PRK14961        174 KLKIISEEKIF-------------NFLKYILIKESIDTDEYALKLIAYHA-------------HGSMRDALNLLEHAIN-  226 (363)
T ss_pred             eCCCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHHH-
Confidence            88877666543             23322222224567888888776431             1235766655543322 


Q ss_pred             HHHcCCCCCCHHhHHHHHH
Q psy17703        571 AKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       571 A~l~~~~~V~~~Dv~~Ai~  589 (720)
                        . +...++.+++.+++.
T Consensus       227 --~-~~~~It~~~v~~~l~  242 (363)
T PRK14961        227 --L-GKGNINIKNVTDMLG  242 (363)
T ss_pred             --h-cCCCCCHHHHHHHHC
Confidence              2 467899999988764

>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]

Probab=98.96  E-value=4.2e-09  Score=110.05  Aligned_cols=213  Identities=15%  Similarity=0.194  Sum_probs=137.7

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccc---eeeecceeeecCCceeecccccc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQ---MVLQTGALVLADSGVCCIDEFDK  420 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~---~~~~~G~l~lad~gI~~IDEidk  420 (720)
                      -|-++|+.|++||||-.+|++.+..+||...-. ..-..+++..........|.   ..-..|.+..|++|.+|+|||..
T Consensus       226 lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pF-lalNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgE  304 (511)
T COG3283         226 LDAPLLITGETGTGKDLLAKACHLASPRHSKPF-LALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGE  304 (511)
T ss_pred             cCCCeEEecCCCchHHHHHHHHhhcCcccCCCe-eEeecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhh
Confidence            467999999999999999999999998852110 00111111111111110010   12246888999999999999999


Q ss_pred             CChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHH
Q psy17703        421 MSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQF  500 (720)
Q Consensus       421 m~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~  500 (720)
                      |++..|..|+..+.++++.  +.|......+++.||+|+.-.-      ..+.+.-.+...|..|..+ ..+.-||-.+.
T Consensus       305 mSp~lQaKLLRFL~DGtFR--RVGee~Ev~vdVRVIcatq~nL------~~lv~~g~fReDLfyRLNV-Ltl~~PpLRer  375 (511)
T COG3283         305 MSPRLQAKLLRFLNDGTFR--RVGEDHEVHVDVRVICATQVNL------VELVQKGKFREDLFYRLNV-LTLNLPPLRER  375 (511)
T ss_pred             cCHHHHHHHHHHhcCCcee--ecCCcceEEEEEEEEecccccH------HHHHhcCchHHHHHHHhhe-eeecCCccccC
Confidence            9999999999999999875  4888888999999999986332      1223333567778888872 22322222221


Q ss_pred             HHHHHhhcchhHHHHHHHHHHhh---cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCC
Q psy17703        501 DARLARHLDITVLRDYIAYAQEH---LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSE  577 (720)
Q Consensus       501 d~~la~~i~~~~l~~~i~~ar~~---~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~  577 (720)
                      -.-|     ..+..-|+..+...   ..|+++++....+..|            +|+.+.|||...+=  +|.+.+++ .
T Consensus       376 ~~di-----~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y------------~WpGNVRqL~N~iy--RA~s~~Eg-~  435 (511)
T COG3283         376 PQDI-----MPLAELFVQQFSDELGVPRPKLAADLLTVLTRY------------AWPGNVRQLKNAIY--RALTLLEG-Y  435 (511)
T ss_pred             cccc-----hHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHc------------CCCccHHHHHHHHH--HHHHHhcc-C
Confidence            1111     12334455544433   4789999998888754            68889999988653  34444443 4


Q ss_pred             CCCHHhHHH
Q psy17703        578 TVEVQDVDE  586 (720)
Q Consensus       578 ~V~~~Dv~~  586 (720)
                      .+..+|+.-
T Consensus       436 ~l~i~~i~L  444 (511)
T COG3283         436 ELRIEDILL  444 (511)
T ss_pred             ccchhhccc
Confidence            566655543

>PRK10365 transcriptional regulatory protein ZraR; Provisional

Probab=98.96  E-value=5.9e-09  Score=117.53  Aligned_cols=215  Identities=18%  Similarity=0.205  Sum_probs=134.0

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCc--cc--cCCccccccccc---eeecCccccceeeecceeeecCCceeecc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ--YT--SGKGSSAVGLTA---YITKDPETRQMVLQTGALVLADSGVCCID  416 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~--~~--~g~~ss~~glta---~~~~~~~~~~~~~~~G~l~lad~gI~~ID  416 (720)
                      .+.++++.|++||||+.++++++...++..  +.  .........+-.   +..+...++......|.+..|++|++|||
T Consensus       161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld  240 (441)
T PRK10365        161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD  240 (441)
T ss_pred             CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEe
Confidence            568999999999999999999998776431  11  111000000000   00011112222335788899999999999


Q ss_pred             ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCC
Q psy17703        417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQ  496 (720)
Q Consensus       417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~  496 (720)
                      |++.|+++.|..|+.+++.+.+..  .|.....+.++.+|+|++....      .....-.+.+.|+.||.. +.+.-|+
T Consensus       241 ei~~l~~~~q~~l~~~l~~~~~~~--~~~~~~~~~~~rii~~t~~~~~------~~~~~~~~~~~l~~~l~~-~~i~~pp  311 (441)
T PRK10365        241 EIGDISPMMQVRLLRAIQEREVQR--VGSNQTISVDVRLIAATHRDLA------AEVNAGRFRQDLYYRLNV-VAIEVPS  311 (441)
T ss_pred             ccccCCHHHHHHHHHHHccCcEEe--CCCCceeeeceEEEEeCCCCHH------HHHHcCCchHHHHHHhcc-ceecCCC
Confidence            999999999999999999988654  5555667788899999875431      112223577888888863 2332233


Q ss_pred             hHHHHHHHHhhcchhHHHHHHHH-HHhh--cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHH
Q psy17703        497 SEQFDARLARHLDITVLRDYIAY-AQEH--LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKM  573 (720)
Q Consensus       497 ~~~~d~~la~~i~~~~l~~~i~~-ar~~--~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l  573 (720)
                      -.++.+.+.     .+...|+.. +++.  ..+.+++++.+.|..+            +||.+.|+|+.+++.+-..   
T Consensus       312 LreR~~Di~-----~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~------------~wpgN~reL~~~~~~~~~~---  371 (441)
T PRK10365        312 LRQRREDIP-----LLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY------------DWPGNIRELENAVERAVVL---  371 (441)
T ss_pred             hhhcchhHH-----HHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC------------CCCCHHHHHHHHHHHHHHh---
Confidence            222221111     123333332 3322  1246899999888744            5788889999998865443   


Q ss_pred             cCCCCCCHHhHHHH
Q psy17703        574 RYSETVEVQDVDEA  587 (720)
Q Consensus       574 ~~~~~V~~~Dv~~A  587 (720)
                      .....++.+|+...
T Consensus       372 ~~~~~i~~~~l~~~  385 (441)
T PRK10365        372 LTGEYISERELPLA  385 (441)
T ss_pred             CCCCccchHhCchh
Confidence            22346777777544

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.96  E-value=1.6e-08  Score=112.72  Aligned_cols=186  Identities=14%  Similarity=0.164  Sum_probs=106.9

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCCCCccc----cC-----------CccccccccceeecC-ccccceeeeccee-eecCC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVPRSQYT----SG-----------KGSSAVGLTAYITKD-PETRQMVLQTGAL-VLADS  410 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~pr~~~~----~g-----------~~ss~~glta~~~~~-~~~~~~~~~~G~l-~lad~  410 (720)
                      +||+||||||||++|+.+++.+......    ++           .......+.++.... ...++..-..... .....
T Consensus        43 ~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~  122 (484)
T PRK14956         43 YIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKY  122 (484)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCC
Confidence            7999999999999999999977532110    01           000111111110000 0000000000000 01123


Q ss_pred             ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703        411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF  490 (720)
Q Consensus       411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~  490 (720)
                      .|++|||++.|+.+.+++|+..||+-             +..+.+|.++|...             .++++++||+. +|
T Consensus       123 KV~IIDEah~Ls~~A~NALLKtLEEP-------------p~~viFILaTte~~-------------kI~~TI~SRCq-~~  175 (484)
T PRK14956        123 KVYIIDEVHMLTDQSFNALLKTLEEP-------------PAHIVFILATTEFH-------------KIPETILSRCQ-DF  175 (484)
T ss_pred             EEEEEechhhcCHHHHHHHHHHhhcC-------------CCceEEEeecCChh-------------hccHHHHhhhh-ee
Confidence            49999999999999999999999863             23345555555322             58999999995 67


Q ss_pred             EecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703        491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH  570 (720)
Q Consensus       491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~  570 (720)
                      .+...+.++..             +|+.+.-....-.+++++...|+..-             ..++|...+++.-+-+.
T Consensus       176 ~f~~ls~~~i~-------------~~L~~i~~~Egi~~e~eAL~~Ia~~S-------------~Gd~RdAL~lLeq~i~~  229 (484)
T PRK14956        176 IFKKVPLSVLQ-------------DYSEKLCKIENVQYDQEGLFWIAKKG-------------DGSVRDMLSFMEQAIVF  229 (484)
T ss_pred             eecCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CChHHHHHHHHHHHHHh
Confidence            77777655433             33333322234567888888887431             12357777776543332


Q ss_pred             HHHcCCCCCCHHhHHHHHHH
Q psy17703        571 AKMRYSETVEVQDVDEAWRL  590 (720)
Q Consensus       571 A~l~~~~~V~~~Dv~~Ai~l  590 (720)
                          ....++.+++.+++.+
T Consensus       230 ----~~~~it~~~V~~~lg~  245 (484)
T PRK14956        230 ----TDSKLTGVKIRKMIGY  245 (484)
T ss_pred             ----CCCCcCHHHHHHHhCC
Confidence                1246888888776543

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.95  E-value=1.8e-08  Score=115.31  Aligned_cols=187  Identities=20%  Similarity=0.174  Sum_probs=107.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCcccc---------------CCccccccccceeecCc-cccceeeec-ceeeec
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTS---------------GKGSSAVGLTAYITKDP-ETRQMVLQT-GALVLA  408 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~---------------g~~ss~~glta~~~~~~-~~~~~~~~~-G~l~la  408 (720)
                      ..+||+||||+|||++|+.+++.+....-..               |.......+.++..... ..++..... -.-...
T Consensus        38 HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~g  117 (702)
T PRK14960         38 HAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQG  117 (702)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcC
Confidence            3569999999999999999999764311000               11111111111100000 000000000 000112


Q ss_pred             CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703        409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL  488 (720)
Q Consensus       409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl  488 (720)
                      ...|++|||++.|+...+++|+..||+-             +..+.+|.++|...             .++++++||+. 
T Consensus       118 k~KV~IIDEVh~LS~~A~NALLKtLEEP-------------P~~v~FILaTtd~~-------------kIp~TIlSRCq-  170 (702)
T PRK14960        118 RFKVYLIDEVHMLSTHSFNALLKTLEEP-------------PEHVKFLFATTDPQ-------------KLPITVISRCL-  170 (702)
T ss_pred             CcEEEEEechHhcCHHHHHHHHHHHhcC-------------CCCcEEEEEECChH-------------hhhHHHHHhhh-
Confidence            3469999999999999999999999862             22334444444221             47889999994 


Q ss_pred             EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE  568 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~  568 (720)
                      +|.+..++.++..             +++...-..-...+++++.+.|+...             ..+.|.+.+++.-  
T Consensus       171 ~feFkpLs~eEI~-------------k~L~~Il~kEgI~id~eAL~~IA~~S-------------~GdLRdALnLLDQ--  222 (702)
T PRK14960        171 QFTLRPLAVDEIT-------------KHLGAILEKEQIAADQDAIWQIAESA-------------QGSLRDALSLTDQ--  222 (702)
T ss_pred             eeeccCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHH--
Confidence            7888877665443             33333222235568888888887431             1245777776542  


Q ss_pred             HHHHHcCCCCCCHHhHHHHHH
Q psy17703        569 AHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       569 A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      +.+.  +...|+.+|+...+.
T Consensus       223 aIay--g~g~IT~edV~~lLG  241 (702)
T PRK14960        223 AIAY--GQGAVHHQDVKEMLG  241 (702)
T ss_pred             HHHh--cCCCcCHHHHHHHhc
Confidence            2332  457899999988644

>KOG0730|consensus

Probab=98.95  E-value=1.5e-09  Score=121.68  Aligned_cols=186  Identities=22%  Similarity=0.243  Sum_probs=104.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCC-ccccCCc--cccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRS-QYTSGKG--SSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~-~~~~g~~--ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      --|||+||||||||++++++|+.+... ++..|-+  +.-+|..-..+++-+     -++-.  .+ ..|+|+||+|.+.
T Consensus       469 kGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF-----~kAR~--~a-P~IiFfDEiDsi~  540 (693)
T KOG0730|consen  469 KGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVF-----RKARQ--VA-PCIIFFDEIDALA  540 (693)
T ss_pred             ceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHH-----HHHhh--cC-CeEEehhhHHhHh
Confidence            379999999999999999999876432 1122211  111111111111100     01111  22 3799999999875


Q ss_pred             hH-----------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeE
Q psy17703        423 DT-----------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLI  489 (720)
Q Consensus       423 ~~-----------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli  489 (720)
                      .+           ..+.|+.-|         +|+...  .++.|+||+|.+.             .|++||++  |||-+
T Consensus       541 ~~R~g~~~~v~~RVlsqLLtEm---------DG~e~~--k~V~ViAATNRpd-------------~ID~ALlRPGRlD~i  596 (693)
T KOG0730|consen  541 GSRGGSSSGVTDRVLSQLLTEM---------DGLEAL--KNVLVIAATNRPD-------------MIDPALLRPGRLDRI  596 (693)
T ss_pred             hccCCCccchHHHHHHHHHHHc---------cccccc--CcEEEEeccCChh-------------hcCHHHcCCccccee
Confidence            43           234455555         333322  4689999999776             69999999  99988


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHH-HHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEE-ASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE  568 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~e-a~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~  568 (720)
                      +.++.|+.+...+++..+            +++  .| ++++ ..+.|+..          ...+  |-+.+..+.+-|.
T Consensus       597 iyVplPD~~aR~~Ilk~~------------~kk--mp-~~~~vdl~~La~~----------T~g~--SGAel~~lCq~A~  649 (693)
T KOG0730|consen  597 IYVPLPDLEARLEILKQC------------AKK--MP-FSEDVDLEELAQA----------TEGY--SGAEIVAVCQEAA  649 (693)
T ss_pred             EeecCccHHHHHHHHHHH------------Hhc--CC-CCccccHHHHHHH----------hccC--ChHHHHHHHHHHH
Confidence            888777665554444422            222  11 2222 11222211          1112  2267777777665


Q ss_pred             HHHHHc--CCCCCCHHhHHHHHHH
Q psy17703        569 AHAKMR--YSETVEVQDVDEAWRL  590 (720)
Q Consensus       569 A~A~l~--~~~~V~~~Dv~~Ai~l  590 (720)
                      -.|--+  ....|+.+|.++|+.-
T Consensus       650 ~~a~~e~i~a~~i~~~hf~~al~~  673 (693)
T KOG0730|consen  650 LLALRESIEATEITWQHFEEALKA  673 (693)
T ss_pred             HHHHHHhcccccccHHHHHHHHHh
Confidence            555333  2456677787777653

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=98.95  E-value=1.4e-08  Score=116.99  Aligned_cols=187  Identities=20%  Similarity=0.201  Sum_probs=108.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCccccCC---------------ccccccccceeecC-ccccceeeecc-eeeecC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGK---------------GSSAVGLTAYITKD-PETRQMVLQTG-ALVLAD  409 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~---------------~ss~~glta~~~~~-~~~~~~~~~~G-~l~lad  409 (720)
                      .+||+|+||+|||++++.+++.+.......+.               ......+.++.... ...++...... .-..+.
T Consensus        40 a~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk  119 (709)
T PRK08691         40 AYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGK  119 (709)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCC
Confidence            47999999999999999999976321111110               00000010000000 00000000000 001234


Q ss_pred             CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      ..|++|||++.|+....++|+..||+.             +..+.+|.++|...             +++++++||| +.
T Consensus       120 ~KVIIIDEad~Ls~~A~NALLKtLEEP-------------p~~v~fILaTtd~~-------------kL~~TIrSRC-~~  172 (709)
T PRK08691        120 YKVYIIDEVHMLSKSAFNAMLKTLEEP-------------PEHVKFILATTDPH-------------KVPVTVLSRC-LQ  172 (709)
T ss_pred             cEEEEEECccccCHHHHHHHHHHHHhC-------------CCCcEEEEEeCCcc-------------ccchHHHHHH-hh
Confidence            579999999999999999999999862             23345555555222             4889999999 46


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA  569 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A  569 (720)
                      |.+..+..++..             +++...-..-...+++++.+.|.+..             ..+.|.+.+++.-+.+
T Consensus       173 f~f~~Ls~eeI~-------------~~L~~Il~kEgi~id~eAL~~Ia~~A-------------~GslRdAlnLLDqaia  226 (709)
T PRK08691        173 FVLRNMTAQQVA-------------DHLAHVLDSEKIAYEPPALQLLGRAA-------------AGSMRDALSLLDQAIA  226 (709)
T ss_pred             hhcCCCCHHHHH-------------HHHHHHHHHcCCCcCHHHHHHHHHHh-------------CCCHHHHHHHHHHHHH
Confidence            777766655433             33333322334567888888887442             1345777777754433


Q ss_pred             HHHHcCCCCCCHHhHHHHHHH
Q psy17703        570 HAKMRYSETVEVQDVDEAWRL  590 (720)
Q Consensus       570 ~A~l~~~~~V~~~Dv~~Ai~l  590 (720)
                      .    +...|+.+++...+..
T Consensus       227 ~----g~g~It~e~V~~lLG~  243 (709)
T PRK08691        227 L----GSGKVAENDVRQMIGA  243 (709)
T ss_pred             h----cCCCcCHHHHHHHHcc
Confidence            2    3467898888887553

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=98.95  E-value=6.6e-09  Score=122.37  Aligned_cols=185  Identities=19%  Similarity=0.245  Sum_probs=107.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeec-cee-eecCCceeeccccccCCh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQT-GAL-VLADSGVCCIDEFDKMSD  423 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~-G~l-~lad~gI~~IDEidkm~~  423 (720)
                      .|++|+||||||||++++++++....... ....+ ..+.     .+  ..+..-.. ..+ .....+++||||++.++.
T Consensus        53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~-~lna~-~~~i-----~d--ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~  123 (725)
T PRK13341         53 GSLILYGPPGVGKTTLARIIANHTRAHFS-SLNAV-LAGV-----KD--LRAEVDRAKERLERHGKRTILFIDEVHRFNK  123 (725)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcCcce-eehhh-hhhh-----HH--HHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence            49999999999999999999986642211 10000 0000     00  00000000 000 012356999999999999


Q ss_pred             HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHH
Q psy17703        424 TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDAR  503 (720)
Q Consensus       424 ~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~  503 (720)
                      ..+++|+..||++.+               .+++++++...           ..++++++||+. +|.+.+++.++....
T Consensus       124 ~qQdaLL~~lE~g~I---------------iLI~aTTenp~-----------~~l~~aL~SR~~-v~~l~pLs~edi~~I  176 (725)
T PRK13341        124 AQQDALLPWVENGTI---------------TLIGATTENPY-----------FEVNKALVSRSR-LFRLKSLSDEDLHQL  176 (725)
T ss_pred             HHHHHHHHHhcCceE---------------EEEEecCCChH-----------hhhhhHhhcccc-ceecCCCCHHHHHHH
Confidence            999999999986543               34554432210           147799999985 677777776655444


Q ss_pred             HHhhcchhHHHHHHHH-HHh--hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCC--CC
Q psy17703        504 LARHLDITVLRDYIAY-AQE--HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYS--ET  578 (720)
Q Consensus       504 la~~i~~~~l~~~i~~-ar~--~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~--~~  578 (720)
                      +.+         ++.. .+.  .....+++++.+.|.++.             +...|++..++..+...+.....  ..
T Consensus       177 L~~---------~l~~~~~~~g~~~v~I~deaL~~La~~s-------------~GD~R~lln~Le~a~~~~~~~~~~~i~  234 (725)
T PRK13341        177 LKR---------ALQDKERGYGDRKVDLEPEAEKHLVDVA-------------NGDARSLLNALELAVESTPPDEDGLID  234 (725)
T ss_pred             HHH---------HHHHHHhhcCCcccCCCHHHHHHHHHhC-------------CCCHHHHHHHHHHHHHhcccCCCCcee
Confidence            332         2211 110  124578999998887531             23458898888866543322221  22


Q ss_pred             CCHHhHHHHH
Q psy17703        579 VEVQDVDEAW  588 (720)
Q Consensus       579 V~~~Dv~~Ai  588 (720)
                      ++.+++++++
T Consensus       235 It~~~~~e~l  244 (725)
T PRK13341        235 ITLAIAEESI  244 (725)
T ss_pred             ccHHHHHHHH
Confidence            6666666664

>CHL00206 ycf2 Ycf2; Provisional

Probab=98.95  E-value=3.8e-09  Score=130.08  Aligned_cols=135  Identities=9%  Similarity=0.131  Sum_probs=83.5

Q ss_pred             CceeeccccccCChHH-----HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc
Q psy17703        410 SGVCCIDEFDKMSDTT-----RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS  484 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~-----~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls  484 (720)
                      ..|++|||||.+...+     ...|+..|+...        ...-..++.||||||.+.             .|+|||++
T Consensus      1733 PCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~--------~~~s~~~VIVIAATNRPD-------------~LDPALLR 1791 (2281)
T CHL00206       1733 PCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDC--------ERCSTRNILVIASTHIPQ-------------KVDPALIA 1791 (2281)
T ss_pred             CeEEEEEchhhcCCCccceehHHHHHHHhcccc--------ccCCCCCEEEEEeCCCcc-------------cCCHhHcC
Confidence            5799999999998653     234444453210        001124578999999776             69999999


Q ss_pred             --cceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHH
Q psy17703        485 --RFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLE  561 (720)
Q Consensus       485 --RFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le  561 (720)
                        |||-.+.+..|+...+.+++..          +.+.+. ...+..  ...+.++          ..  ....|.+.|.
T Consensus      1792 PGRFDR~I~Ir~Pd~p~R~kiL~I----------Ll~tkg~~L~~~~--vdl~~LA----------~~--T~GfSGADLa 1847 (2281)
T CHL00206       1792 PNKLNTCIKIRRLLIPQQRKHFFT----------LSYTRGFHLEKKM--FHTNGFG----------SI--TMGSNARDLV 1847 (2281)
T ss_pred             CCCCCeEEEeCCCCchhHHHHHHH----------HHhhcCCCCCccc--ccHHHHH----------Hh--CCCCCHHHHH
Confidence              9998888876655444433321          011111 011110  0011111          11  1224569999


Q ss_pred             HHHHHHHHHHHHcCCCCCCHHhHHHHHH
Q psy17703        562 SLIRLSEAHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       562 ~lirla~A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      +|+.-|.-.|.-+.+..|+.+|++.|+.
T Consensus      1848 nLvNEAaliAirq~ks~Id~~~I~~Al~ 1875 (2281)
T CHL00206       1848 ALTNEALSISITQKKSIIDTNTIRSALH 1875 (2281)
T ss_pred             HHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence            9999998888889999999999999965

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.93  E-value=1.8e-08  Score=114.89  Aligned_cols=187  Identities=14%  Similarity=0.144  Sum_probs=106.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCccccCC---------------ccccccccceeecC-ccccceeeecc-eeeecC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGK---------------GSSAVGLTAYITKD-PETRQMVLQTG-ALVLAD  409 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~---------------~ss~~glta~~~~~-~~~~~~~~~~G-~l~lad  409 (720)
                      .+||+||||+|||++++.+++.+.......+.               ......+.++.... ...++..-... .-..++
T Consensus        40 a~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~  119 (546)
T PRK14957         40 AYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGR  119 (546)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCC
Confidence            37899999999999999999966431110000               00111111100000 00000000000 002235


Q ss_pred             CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      ..|++|||+++|+.+.+++|+..||+.             |..+.+|.+++-..             .++++++||+ .+
T Consensus       120 ~kViIIDEa~~ls~~a~naLLK~LEep-------------p~~v~fIL~Ttd~~-------------kil~tI~SRc-~~  172 (546)
T PRK14957        120 YKVYLIDEVHMLSKQSFNALLKTLEEP-------------PEYVKFILATTDYH-------------KIPVTILSRC-IQ  172 (546)
T ss_pred             cEEEEEechhhccHHHHHHHHHHHhcC-------------CCCceEEEEECChh-------------hhhhhHHHhe-ee
Confidence            679999999999999999999999963             22333444443111             4778899999 58


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA  569 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A  569 (720)
                      |.+..++.++..             +++...-......+++++.+.++...             ..+.|.+..++.-+-+
T Consensus       173 ~~f~~Ls~~eI~-------------~~L~~il~~egi~~e~~Al~~Ia~~s-------------~GdlR~alnlLek~i~  226 (546)
T PRK14957        173 LHLKHISQADIK-------------DQLKIILAKENINSDEQSLEYIAYHA-------------KGSLRDALSLLDQAIS  226 (546)
T ss_pred             EEeCCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHHH
Confidence            888877766533             22322222234567888888777442             1234766666654333


Q ss_pred             HHHHcCCCCCCHHhHHHHHHH
Q psy17703        570 HAKMRYSETVEVQDVDEAWRL  590 (720)
Q Consensus       570 ~A~l~~~~~V~~~Dv~~Ai~l  590 (720)
                      .   .+ +.++.+++.+++..
T Consensus       227 ~---~~-~~It~~~V~~~l~~  243 (546)
T PRK14957        227 F---CG-GELKQAQIKQMLGI  243 (546)
T ss_pred             h---cc-CCCCHHHHHHHHcc
Confidence            2   22 67999999887553

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.93  E-value=1.6e-08  Score=115.14  Aligned_cols=182  Identities=20%  Similarity=0.189  Sum_probs=106.9

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCCCCcccc---------------CCccccccccceeecCc-cccce----eeecceeee
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVPRSQYTS---------------GKGSSAVGLTAYITKDP-ETRQM----VLQTGALVL  407 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~pr~~~~~---------------g~~ss~~glta~~~~~~-~~~~~----~~~~G~l~l  407 (720)
                      +||+||||||||++++.+++.+......+               |.......+.++..... ..++.    ...|   ..
T Consensus        41 ~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p---~~  117 (509)
T PRK14958         41 YLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAP---TK  117 (509)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhcc---cc
Confidence            69999999999999999999774321111               11111111111100000 00000    0111   11


Q ss_pred             cCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703        408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD  487 (720)
Q Consensus       408 ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd  487 (720)
                      +...|++|||++.|+.+..++|+..||+-             |..+.+|.++|...             +++++++||+ 
T Consensus       118 ~~~kV~iIDE~~~ls~~a~naLLk~LEep-------------p~~~~fIlattd~~-------------kl~~tI~SRc-  170 (509)
T PRK14958        118 GRFKVYLIDEVHMLSGHSFNALLKTLEEP-------------PSHVKFILATTDHH-------------KLPVTVLSRC-  170 (509)
T ss_pred             CCcEEEEEEChHhcCHHHHHHHHHHHhcc-------------CCCeEEEEEECChH-------------hchHHHHHHh-
Confidence            23469999999999999999999999862             33444555554221             4788899999 


Q ss_pred             eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHH
Q psy17703        488 LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS  567 (720)
Q Consensus       488 li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla  567 (720)
                      .+|.+...+.++.             .+++...-+.....+++++.+.+.+..             ..++|.+.+++.-+
T Consensus       171 ~~~~f~~l~~~~i-------------~~~l~~il~~egi~~~~~al~~ia~~s-------------~GslR~al~lLdq~  224 (509)
T PRK14958        171 LQFHLAQLPPLQI-------------AAHCQHLLKEENVEFENAALDLLARAA-------------NGSVRDALSLLDQS  224 (509)
T ss_pred             hhhhcCCCCHHHH-------------HHHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCcHHHHHHHHHHH
Confidence            4777776665543             223322222234557788877776432             13457777776433


Q ss_pred             HHHHHHcCCCCCCHHhHHHHHH
Q psy17703        568 EAHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       568 ~A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      .  +.  +...|+.+|+.+.+.
T Consensus       225 i--a~--~~~~It~~~V~~~lg  242 (509)
T PRK14958        225 I--AY--GNGKVLIADVKTMLG  242 (509)
T ss_pred             H--hc--CCCCcCHHHHHHHHC
Confidence            2  22  356899999988754

>KOG0742|consensus

Probab=98.93  E-value=1.1e-08  Score=108.50  Aligned_cols=131  Identities=24%  Similarity=0.249  Sum_probs=89.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceee-cCccccceeeecceeeecCCc-eeecccccc---
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYIT-KDPETRQMVLQTGALVLADSG-VCCIDEFDK---  420 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~-~~~~~~~~~~~~G~l~lad~g-I~~IDEidk---  420 (720)
                      -|||++||||||||++++-+++.+. ..|.-.++.+.+.+.+-.+ +-...-.|...      +..| ++||||.|.   
T Consensus       385 RNilfyGPPGTGKTm~ArelAr~SG-lDYA~mTGGDVAPlG~qaVTkiH~lFDWakk------S~rGLllFIDEADAFLc  457 (630)
T KOG0742|consen  385 RNILFYGPPGTGKTMFARELARHSG-LDYAIMTGGDVAPLGAQAVTKIHKLFDWAKK------SRRGLLLFIDEADAFLC  457 (630)
T ss_pred             hheeeeCCCCCCchHHHHHHHhhcC-CceehhcCCCccccchHHHHHHHHHHHHHhh------cccceEEEehhhHHHHH
Confidence            3999999999999999999998764 4455555555555543211 11111223322      2344 689999875   


Q ss_pred             ------CChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecC
Q psy17703        421 ------MSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLD  494 (720)
Q Consensus       421 ------m~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d  494 (720)
                            |+++.+.+|...+=       +.|.   -.-++.++-|+|.++             +|+.+.-+|||-++.++-
T Consensus       458 eRnktymSEaqRsaLNAlLf-------RTGd---qSrdivLvlAtNrpg-------------dlDsAV~DRide~veFpL  514 (630)
T KOG0742|consen  458 ERNKTYMSEAQRSALNALLF-------RTGD---QSRDIVLVLATNRPG-------------DLDSAVNDRIDEVVEFPL  514 (630)
T ss_pred             HhchhhhcHHHHHHHHHHHH-------Hhcc---cccceEEEeccCCcc-------------chhHHHHhhhhheeecCC
Confidence                  77888888776652       1121   123577888889766             688999999999999999


Q ss_pred             CChHHHHHHHHh
Q psy17703        495 PQSEQFDARLAR  506 (720)
Q Consensus       495 ~~~~~~d~~la~  506 (720)
                      |..+++.+.+..
T Consensus       515 PGeEERfkll~l  526 (630)
T KOG0742|consen  515 PGEEERFKLLNL  526 (630)
T ss_pred             CChHHHHHHHHH
Confidence            988887766553

>TIGR03689 pup_AAA proteasome ATPase

Probab=98.93  E-value=7.3e-09  Score=116.92  Aligned_cols=139  Identities=16%  Similarity=0.198  Sum_probs=80.1

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCC-ccccccccceeecCccccce------ee-ecceee-ecCCceeecc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGK-GSSAVGLTAYITKDPETRQM------VL-QTGALV-LADSGVCCID  416 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~-~ss~~glta~~~~~~~~~~~------~~-~~G~l~-lad~gI~~ID  416 (720)
                      .++||+||||||||++++++++.+....+.... ............-....++.      .+ .+.... .....|+|||
T Consensus       217 ~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfID  296 (512)
T TIGR03689       217 KGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFD  296 (512)
T ss_pred             cceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEe
Confidence            479999999999999999999987543322000 00000000000000000000      00 000000 0124599999


Q ss_pred             ccccCChH--------H----HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc
Q psy17703        417 EFDKMSDT--------T----RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS  484 (720)
Q Consensus       417 Eidkm~~~--------~----~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls  484 (720)
                      |+|.+...        .    ...|+..|+.         ...  ..++.+|+|+|...             .|+++|++
T Consensus       297 EiD~L~~~R~~~~s~d~e~~il~~LL~~LDg---------l~~--~~~ViVI~ATN~~d-------------~LDpALlR  352 (512)
T TIGR03689       297 EMDSIFRTRGSGVSSDVETTVVPQLLSELDG---------VES--LDNVIVIGASNRED-------------MIDPAILR  352 (512)
T ss_pred             hhhhhhcccCCCccchHHHHHHHHHHHHhcc---------ccc--CCceEEEeccCChh-------------hCCHhhcC
Confidence            99987321        1    1234444431         111  13578999999765             58999998


Q ss_pred             --cceeEEEecCCChHHHHHHHHhhc
Q psy17703        485 --RFDLIFLLLDPQSEQFDARLARHL  508 (720)
Q Consensus       485 --RFdli~~l~d~~~~~~d~~la~~i  508 (720)
                        |||..+.+..|..+.....+..++
T Consensus       353 pGRfD~~I~~~~Pd~e~r~~Il~~~l  378 (512)
T TIGR03689       353 PGRLDVKIRIERPDAEAAADIFSKYL  378 (512)
T ss_pred             ccccceEEEeCCCCHHHHHHHHHHHh
Confidence              999999999998888777776665

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=98.92  E-value=2.6e-08  Score=104.41  Aligned_cols=146  Identities=26%  Similarity=0.249  Sum_probs=104.7

Q ss_pred             CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      .|++||||.+-++-+..+.|+.+||.----              .++.|+|.-...-.+.. +..-..+|..||+|. ||
T Consensus       292 pGVLFIDEvHmLDIE~FsFlnrAlEse~aP--------------Iii~AtNRG~~kiRGTd-~~sPhGIP~DlLDRl-lI  355 (450)
T COG1224         292 PGVLFIDEVHMLDIECFSFLNRALESELAP--------------IIILATNRGMTKIRGTD-IESPHGIPLDLLDRL-LI  355 (450)
T ss_pred             cceEEEechhhhhHHHHHHHHHHhhcccCc--------------EEEEEcCCceeeecccC-CcCCCCCCHhhhhhe-eE
Confidence            489999999999999999999999865322              35667775433322221 333457999999999 57


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA  569 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A  569 (720)
                      +...+.+.++..+.|...            |+. -.-.++++|.+.|.+.-            ...|-|....|+.-|.-
T Consensus       356 I~t~py~~~EireIi~iR------------a~e-e~i~l~~~Ale~L~~ig------------~etSLRYa~qLL~pa~i  410 (450)
T COG1224         356 ISTRPYSREEIREIIRIR------------AKE-EDIELSDDALEYLTDIG------------EETSLRYAVQLLTPASI  410 (450)
T ss_pred             EecCCCCHHHHHHHHHHh------------hhh-hccccCHHHHHHHHhhc------------hhhhHHHHHHhccHHHH
Confidence            777777666665555421            222 25568999998887431            12234878888888999


Q ss_pred             HHHHcCCCCCCHHhHHHHHHHHHHHHH
Q psy17703        570 HAKMRYSETVEVQDVDEAWRLHREALK  596 (720)
Q Consensus       570 ~A~l~~~~~V~~~Dv~~Ai~l~~~~l~  596 (720)
                      .|+.+++..|..+|+++|.+||-+.-+
T Consensus       411 iA~~rg~~~V~~~dVe~a~~lF~D~kr  437 (450)
T COG1224         411 IAKRRGSKRVEVEDVERAKELFLDVKR  437 (450)
T ss_pred             HHHHhCCCeeehhHHHHHHHHHhhHHH
Confidence            999999999999999999999865443

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.90  E-value=8.5e-10  Score=102.32  Aligned_cols=116  Identities=27%  Similarity=0.331  Sum_probs=72.0

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccc--cccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSS--AVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT  424 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss--~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~  424 (720)
                      |||+||||||||++++.+++.+...++ .++....  ..+......     ..+..++..  .+...|++|||+|.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i-----~~~~~~~~~--~~~~~vl~iDe~d~l~~~   73 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKI-----RDFFKKAKK--SAKPCVLFIDEIDKLFPK   73 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHH-----HHHHHHHHH--TSTSEEEEEETGGGTSHH
T ss_pred             CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccc-----ccccccccc--cccceeeeeccchhcccc
Confidence            799999999999999999998753221 1111100  000000000     001111100  002589999999999887


Q ss_pred             H-----------HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhh-ccceeEEEe
Q psy17703        425 T-----------RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLL-SRFDLIFLL  492 (720)
Q Consensus       425 ~-----------~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLl-sRFdli~~l  492 (720)
                      .           ...|...|+...-.          +.++.+|+++|...             .++++++ +||+..+.+
T Consensus        74 ~~~~~~~~~~~~~~~L~~~l~~~~~~----------~~~~~vI~ttn~~~-------------~i~~~l~~~rf~~~i~~  130 (132)
T PF00004_consen   74 SQPSSSSFEQRLLNQLLSLLDNPSSK----------NSRVIVIATTNSPD-------------KIDPALLRSRFDRRIEF  130 (132)
T ss_dssp             CSTSSSHHHHHHHHHHHHHHHTTTTT----------SSSEEEEEEESSGG-------------GSCHHHHSTTSEEEEEE
T ss_pred             cccccccccccccceeeecccccccc----------cccceeEEeeCChh-------------hCCHhHHhCCCcEEEEc
Confidence            6           56777777643211          35689999999643             5899999 999988876


Q ss_pred             c
Q psy17703        493 L  493 (720)
Q Consensus       493 ~  493 (720)
                      .
T Consensus       131 ~  131 (132)
T PF00004_consen  131 P  131 (132)
T ss_dssp             -
T ss_pred             C
Confidence            4

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=98.89  E-value=3.7e-08  Score=111.65  Aligned_cols=190  Identities=15%  Similarity=0.148  Sum_probs=110.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCcccc-CCcccccccc-------ceeec-----Cc--ccc-----ceeeec-ce
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTS-GKGSSAVGLT-------AYITK-----DP--ETR-----QMVLQT-GA  404 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~-g~~ss~~glt-------a~~~~-----~~--~~~-----~~~~~~-G~  404 (720)
                      .++||+||||||||++|+.+++.+....... +......+..       .....     +.  .++     +..-.. -.
T Consensus        44 ~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~  123 (507)
T PRK06645         44 GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYK  123 (507)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhc
Confidence            4799999999999999999999775321111 0000000000       00000     00  000     000000 00


Q ss_pred             eeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc
Q psy17703        405 LVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS  484 (720)
Q Consensus       405 l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls  484 (720)
                      -..++..|++|||++.|+...+++|+..||+.             +..+.+|.++|...             .+++++.|
T Consensus       124 P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep-------------p~~~vfI~aTte~~-------------kI~~tI~S  177 (507)
T PRK06645        124 PLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP-------------PPHIIFIFATTEVQ-------------KIPATIIS  177 (507)
T ss_pred             cccCCcEEEEEEChhhcCHHHHHHHHHHHhhc-------------CCCEEEEEEeCChH-------------HhhHHHHh
Confidence            12345779999999999999999999999852             33455555554221             48899999


Q ss_pred             cceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHH
Q psy17703        485 RFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLI  564 (720)
Q Consensus       485 RFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~li  564 (720)
                      |+ ..|.+..++.++..             +++.+.-+.-...+++++.+.|....             ..+.|.+.+++
T Consensus       178 Rc-~~~ef~~ls~~el~-------------~~L~~i~~~egi~ie~eAL~~Ia~~s-------------~GslR~al~~L  230 (507)
T PRK06645        178 RC-QRYDLRRLSFEEIF-------------KLLEYITKQENLKTDIEALRIIAYKS-------------EGSARDAVSIL  230 (507)
T ss_pred             cc-eEEEccCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHH
Confidence            99 47778777665433             33333322335567888888876431             13458777777


Q ss_pred             HHHHHHHHHcCCCCCCHHhHHHHHH
Q psy17703        565 RLSEAHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       565 rla~A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      .-+.+.+.-. ...||.+|+.+.+.
T Consensus       231 dkai~~~~~~-~~~It~~~V~~llg  254 (507)
T PRK06645        231 DQAASMSAKS-DNIISPQVINQMLG  254 (507)
T ss_pred             HHHHHhhccC-CCCcCHHHHHHHHC
Confidence            6544443211 23688888887644

>KOG0745|consensus

Probab=98.88  E-value=7.4e-09  Score=110.68  Aligned_cols=117  Identities=16%  Similarity=0.219  Sum_probs=74.5

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCC-CCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVP-RSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~p-r~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      ...||||+||+|+|||.|++.+|+.+. +....+.+.-+.+|..+--+..-...-..--.+.+..|..||+||||+||+.
T Consensus       225 eKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~  304 (564)
T KOG0745|consen  225 EKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKIT  304 (564)
T ss_pred             ecccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhc
Confidence            457999999999999999999999883 2333344444444432211100000111112345667889999999999986


Q ss_pred             h--------------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEeccc
Q psy17703        423 D--------------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAAN  460 (720)
Q Consensus       423 ~--------------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaN  460 (720)
                      .              -.|.+|+..+|--.|.+.+.|.....+.+...|-|+|
T Consensus       305 ~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtn  356 (564)
T KOG0745|consen  305 KKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTN  356 (564)
T ss_pred             ccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccc
Confidence            2              3588999999988888865555444444444444444

>PRK10865 protein disaggregation chaperone; Provisional

Probab=98.88  E-value=7.2e-09  Score=125.11  Aligned_cols=186  Identities=15%  Similarity=0.160  Sum_probs=106.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCccccccccceeecCccccceeeecc----eeeecCCceeecccc
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLTAYITKDPETRQMVLQTG----ALVLADSGVCCIDEF  418 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glta~~~~~~~~~~~~~~~G----~l~lad~gI~~IDEi  418 (720)
                      ++||+||||||||.+++++++.+.+.    ++..................+....-..+.|    ++.....++++|||+
T Consensus       600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEi  679 (857)
T PRK10865        600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEV  679 (857)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeeh
Confidence            68999999999999999999876421    1111110000000000000000000000011    112224589999999


Q ss_pred             ccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCC----CC--ccc------ccccCCChhhhccc
Q psy17703        419 DKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWN----TS--KTI------IDNIRLPHTLLSRF  486 (720)
Q Consensus       419 dkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~----~~--~~~------~~~~~l~~aLlsRF  486 (720)
                      ++++++.++.|+++|+++.++-. .|....+ .++.+|.|+|-....|.    ..  ..+      ...-.+.|+|++|+
T Consensus       680 eka~~~v~~~Ll~ile~g~l~d~-~gr~vd~-rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRl  757 (857)
T PRK10865        680 EKAHPDVFNILLQVLDDGRLTDG-QGRTVDF-RNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRI  757 (857)
T ss_pred             hhCCHHHHHHHHHHHhhCceecC-CceEEee-cccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhC
Confidence            99999999999999999988742 3333333 24678999996322111    00  000      11225899999999


Q ss_pred             eeEEEecCCChHHHHHHHHhhcchhHHHHHHH-HHHhhcCCcchHHHHHHHHHH
Q psy17703        487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIA-YAQEHLSPTLSEEASQRLIQT  539 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~-~ar~~~~p~ls~ea~~~l~~~  539 (720)
                      |.++.+.++..++....+...+     .+... ..+..+...+++++.+.|.++
T Consensus       758 d~iivF~PL~~edl~~Iv~~~L-----~~l~~rl~~~gi~l~is~~al~~L~~~  806 (857)
T PRK10865        758 DEVVVFHPLGEQHIASIAQIQL-----QRLYKRLEERGYEIHISDEALKLLSEN  806 (857)
T ss_pred             CeeEecCCCCHHHHHHHHHHHH-----HHHHHHHHhCCCcCcCCHHHHHHHHHc
Confidence            9899888887765544333222     11111 122345667899999988753

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=98.84  E-value=1.5e-08  Score=119.06  Aligned_cols=185  Identities=24%  Similarity=0.257  Sum_probs=110.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCc--cccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKG--SSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD  423 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~--ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~  423 (720)
                      ++||+||||||||++++++++.+....+ .++..  ....+..+..+++..     ..+   ......|+||||+|.+..
T Consensus       187 gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f-----~~a---~~~~P~IifIDEiD~l~~  258 (644)
T PRK10733        187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMF-----EQA---KKAAPCIIFIDEIDAVGR  258 (644)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHH-----HHH---HhcCCcEEEehhHhhhhh
Confidence            5999999999999999999997754322 11111  001111111111100     000   011346999999999732


Q ss_pred             H--------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cce
Q psy17703        424 T--------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFD  487 (720)
Q Consensus       424 ~--------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFd  487 (720)
                      .              ..+.|+..|+..           .-+.++.+|||+|+..             .|++++++  |||
T Consensus       259 ~r~~~~~g~~~~~~~~ln~lL~~mdg~-----------~~~~~vivIaaTN~p~-------------~lD~Al~RpgRfd  314 (644)
T PRK10733        259 QRGAGLGGGHDEREQTLNQMLVEMDGF-----------EGNEGIIVIAATNRPD-------------VLDPALLRPGRFD  314 (644)
T ss_pred             ccCCCCCCCchHHHHHHHHHHHhhhcc-----------cCCCCeeEEEecCChh-------------hcCHHHhCCcccc
Confidence            1              122333333311           1134688999999775             58899997  999


Q ss_pred             eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHH
Q psy17703        488 LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS  567 (720)
Q Consensus       488 li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla  567 (720)
                      ..+.+..|..+++.+.+..|+..           ..+.+.+.-   ..+.            ......|.+.+..+++-|
T Consensus       315 r~i~v~~Pd~~~R~~Il~~~~~~-----------~~l~~~~d~---~~la------------~~t~G~sgadl~~l~~eA  368 (644)
T PRK10733        315 RQVVVGLPDVRGREQILKVHMRR-----------VPLAPDIDA---AIIA------------RGTPGFSGADLANLVNEA  368 (644)
T ss_pred             eEEEcCCCCHHHHHHHHHHHhhc-----------CCCCCcCCH---HHHH------------hhCCCCCHHHHHHHHHHH
Confidence            99988888777665555433210           011121111   1111            011235679999999988


Q ss_pred             HHHHHHcCCCCCCHHhHHHHHH
Q psy17703        568 EAHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       568 ~A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      .-.|.-+.+..++.+|+++|+.
T Consensus       369 a~~a~r~~~~~i~~~d~~~a~~  390 (644)
T PRK10733        369 ALFAARGNKRVVSMVEFEKAKD  390 (644)
T ss_pred             HHHHHHcCCCcccHHHHHHHHH
Confidence            8888888888999999999875

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.84  E-value=6.2e-09  Score=97.25  Aligned_cols=127  Identities=23%  Similarity=0.207  Sum_probs=79.5

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCC----CccccCCccccccccceeecCccccc--eeeecceeeecCCceeeccc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPR----SQYTSGKGSSAVGLTAYITKDPETRQ--MVLQTGALVLADSGVCCIDE  417 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr----~~~~~g~~ss~~glta~~~~~~~~~~--~~~~~G~l~lad~gI~~IDE  417 (720)
                      ...+++++|+||+|||++++.+++.+..    ..+........... .    ......  .............+++++||
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~lilDe   92 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLV-V----AELFGHFLVRLLFELAEKAKPGVLFIDE   92 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhH-H----HHHhhhhhHhHHHHhhccCCCeEEEEeC
Confidence            4679999999999999999999987631    11111110000000 0    000000  00001122234578999999


Q ss_pred             cccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEec
Q psy17703        418 FDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLL  493 (720)
Q Consensus       418 idkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~  493 (720)
                      ++.+.......+++.+++.....       ..+.++.+++++|+...           ..+++.+.+||+..+.+.
T Consensus        93 ~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~ii~~~~~~~~-----------~~~~~~~~~r~~~~i~~~  150 (151)
T cd00009          93 IDSLSRGAQNALLRVLETLNDLR-------IDRENVRVIGATNRPLL-----------GDLDRALYDRLDIRIVIP  150 (151)
T ss_pred             hhhhhHHHHHHHHHHHHhcCcee-------ccCCCeEEEEecCcccc-----------CCcChhHHhhhccEeecC
Confidence            99998888888888887654332       33567899999997763           247789999998666553

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=98.84  E-value=6.1e-08  Score=112.25  Aligned_cols=183  Identities=22%  Similarity=0.201  Sum_probs=103.8

Q ss_pred             c-EEEEcCCCCHHHHHHHHHHhhCCCCccc----cCC-----------cccccccccee-ecCccccce----eeeccee
Q psy17703        347 N-ILLCGDPGTSKSQLLSYVYDLVPRSQYT----SGK-----------GSSAVGLTAYI-TKDPETRQM----VLQTGAL  405 (720)
Q Consensus       347 ~-vLL~G~PGtGKS~ll~~va~~~pr~~~~----~g~-----------~ss~~glta~~-~~~~~~~~~----~~~~G~l  405 (720)
                      | +||+|+||+|||++++.+++.+......    +|.           ......+.+.. .+-...++.    ...+   
T Consensus        39 hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p---  115 (647)
T PRK07994         39 HAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAP---  115 (647)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhh---
Confidence            5 5899999999999999999977542110    010           00001111110 000000110    1111   


Q ss_pred             eecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcc
Q psy17703        406 VLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSR  485 (720)
Q Consensus       406 ~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsR  485 (720)
                      ......|++|||++.|+.+.+++|+..||+-             |..+.+|.++|...             .|+++++||
T Consensus       116 ~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP-------------p~~v~FIL~Tt~~~-------------kLl~TI~SR  169 (647)
T PRK07994        116 ARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEHVKFLLATTDPQ-------------KLPVTILSR  169 (647)
T ss_pred             hcCCCEEEEEechHhCCHHHHHHHHHHHHcC-------------CCCeEEEEecCCcc-------------ccchHHHhh
Confidence            1123459999999999999999999999963             22333444443221             488999999


Q ss_pred             ceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703        486 FDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR  565 (720)
Q Consensus       486 Fdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir  565 (720)
                      + ..|.+..++.++...             |+...-..-...+++++.+.|....             ..++|....++.
T Consensus       170 C-~~~~f~~Ls~~ei~~-------------~L~~il~~e~i~~e~~aL~~Ia~~s-------------~Gs~R~Al~lld  222 (647)
T PRK07994        170 C-LQFHLKALDVEQIRQ-------------QLEHILQAEQIPFEPRALQLLARAA-------------DGSMRDALSLTD  222 (647)
T ss_pred             h-eEeeCCCCCHHHHHH-------------HHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHH
Confidence            8 688888887665433             3322221123456777777665331             124577766654


Q ss_pred             HHHHHHHHcCCCCCCHHhHHHHHH
Q psy17703        566 LSEAHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       566 la~A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      -+  .+.  ....|+.+++...+.
T Consensus       223 qa--ia~--~~~~it~~~v~~~lg  242 (647)
T PRK07994        223 QA--IAS--GNGQVTTDDVSAMLG  242 (647)
T ss_pred             HH--HHh--cCCCcCHHHHHHHHc
Confidence            32  322  234678888777654

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.83  E-value=2.3e-08  Score=114.15  Aligned_cols=123  Identities=20%  Similarity=0.156  Sum_probs=76.3

Q ss_pred             CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      ..|++|||+|.|+...+++|+..||+-             +.++.||.++|...             +|+++++||| ..
T Consensus       125 ~KViIIDEah~Ls~~AaNALLKTLEEP-------------P~~v~FILaTtep~-------------kLlpTIrSRC-q~  177 (700)
T PRK12323        125 FKVYMIDEVHMLTNHAFNAMLKTLEEP-------------PEHVKFILATTDPQ-------------KIPVTVLSRC-LQ  177 (700)
T ss_pred             ceEEEEEChHhcCHHHHHHHHHhhccC-------------CCCceEEEEeCChH-------------hhhhHHHHHH-Hh
Confidence            459999999999999999999999862             23445555555222             5889999999 57


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA  569 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A  569 (720)
                      |.+..++.++....+.             +.-......+++++.+.|...-             ..++|...+++.-+.+
T Consensus       178 f~f~~ls~eei~~~L~-------------~Il~~Egi~~d~eAL~~IA~~A-------------~Gs~RdALsLLdQaia  231 (700)
T PRK12323        178 FNLKQMPPGHIVSHLD-------------AILGEEGIAHEVNALRLLAQAA-------------QGSMRDALSLTDQAIA  231 (700)
T ss_pred             cccCCCChHHHHHHHH-------------HHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHHH
Confidence            8887776654433222             1111123446677766665321             1245766666543222


Q ss_pred             HHHHcCCCCCCHHhHHHHHH
Q psy17703        570 HAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       570 ~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                          .....++.+++.+.+.
T Consensus       232 ----~~~~~It~~~V~~~LG  247 (700)
T PRK12323        232 ----YSAGNVSEEAVRGMLG  247 (700)
T ss_pred             ----hccCCcCHHHHHHHhC
Confidence                2234677777776543

>KOG0652|consensus

Probab=98.83  E-value=1.2e-08  Score=102.41  Aligned_cols=187  Identities=22%  Similarity=0.275  Sum_probs=110.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCccccCC----ccccccccceeecCccccceeeecceeeec---CCceeeccccc
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGK----GSSAVGLTAYITKDPETRQMVLQTGALVLA---DSGVCCIDEFD  419 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~----~ss~~glta~~~~~~~~~~~~~~~G~l~la---d~gI~~IDEid  419 (720)
                      .+|++||||||||.++|+++..... .|-..-    -...+|..+..++|.           +.+|   ...|+||||+|
T Consensus       207 GvLmYGPPGTGKTlmARAcAaqT~a-TFLKLAgPQLVQMfIGdGAkLVRDA-----------FaLAKEkaP~IIFIDElD  274 (424)
T KOG0652|consen  207 GVLMYGPPGTGKTLMARACAAQTNA-TFLKLAGPQLVQMFIGDGAKLVRDA-----------FALAKEKAPTIIFIDELD  274 (424)
T ss_pred             ceEeeCCCCCcHHHHHHHHHHhccc-hHHHhcchHHHhhhhcchHHHHHHH-----------HHHhhccCCeEEEEechh
Confidence            6999999999999999999874421 110000    112223333333332           2232   24699999998


Q ss_pred             cCC-----------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cc
Q psy17703        420 KMS-----------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RF  486 (720)
Q Consensus       420 km~-----------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RF  486 (720)
                      .+.           .+.|-.+++.+.|-      .|  .+-+.++-+|||+|...             -|.|+|++  |.
T Consensus       275 AIGtKRfDSek~GDREVQRTMLELLNQL------DG--Fss~~~vKviAATNRvD-------------iLDPALlRSGRL  333 (424)
T KOG0652|consen  275 AIGTKRFDSEKAGDREVQRTMLELLNQL------DG--FSSDDRVKVIAATNRVD-------------ILDPALLRSGRL  333 (424)
T ss_pred             hhccccccccccccHHHHHHHHHHHHhh------cC--CCCccceEEEeeccccc-------------ccCHHHhhcccc
Confidence            763           34577788888753      22  12356788999999765             58899987  89


Q ss_pred             eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703        487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR  565 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir  565 (720)
                      |-.+.++-|.++.+.+++.-|            +|+ ++.+.+.-+   .+.      |.    ...+..  -|..++.-
T Consensus       334 DRKIEfP~Pne~aRarIlQIH------------sRKMnv~~DvNfe---ELa------Rs----TddFNG--AQcKAVcV  386 (424)
T KOG0652|consen  334 DRKIEFPHPNEEARARILQIH------------SRKMNVSDDVNFE---ELA------RS----TDDFNG--AQCKAVCV  386 (424)
T ss_pred             cccccCCCCChHHHHHHHHHh------------hhhcCCCCCCCHH---HHh------hc----ccccCc--hhheeeeh
Confidence            988899888776655555433            111 223322111   111      11    111111  33333333


Q ss_pred             HHHHHHHHcCCCCCCHHhHHHHHHHHHH
Q psy17703        566 LSEAHAKMRYSETVEVQDVDEAWRLHRE  593 (720)
Q Consensus       566 la~A~A~l~~~~~V~~~Dv~~Ai~l~~~  593 (720)
                      -|--.|.-+...+|+.+|..++|.-.+.
T Consensus       387 EAGMiALRr~atev~heDfmegI~eVqa  414 (424)
T KOG0652|consen  387 EAGMIALRRGATEVTHEDFMEGILEVQA  414 (424)
T ss_pred             hhhHHHHhcccccccHHHHHHHHHHHHH
Confidence            3344555567789999999999775543

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.83  E-value=1.1e-07  Score=115.06  Aligned_cols=49  Identities=20%  Similarity=0.289  Sum_probs=40.0

Q ss_pred             CcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCC
Q psy17703        663 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP  713 (720)
Q Consensus       663 ~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p  713 (720)
                      .+..+||++|+.+.....++++|++..+.-++| -...+ .+|.++.++|-
T Consensus       613 ~VvllDeieka~~~v~~~Llq~le~g~~~d~~g-~~v~~-~~~i~I~Tsn~  661 (821)
T CHL00095        613 TVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKG-RTIDF-KNTLIIMTSNL  661 (821)
T ss_pred             eEEEECChhhCCHHHHHHHHHHhccCceecCCC-cEEec-CceEEEEeCCc
Confidence            567899999999999999999999999887664 34343 47888888885

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=1.5e-08  Score=116.02  Aligned_cols=187  Identities=24%  Similarity=0.248  Sum_probs=110.7

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcc----ccccccceeecCccccceeeecceeeecCCceeecccccc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGS----SAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK  420 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~s----s~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk  420 (720)
                      ...+||+||||||||.|+++++..+..... +-.++    ..+|.+...++.....     +-   .....|+||||+|+
T Consensus       276 ~~giLl~GpPGtGKT~lAkava~~~~~~fi-~v~~~~l~sk~vGesek~ir~~F~~-----A~---~~~p~iiFiDEiDs  346 (494)
T COG0464         276 PKGVLLYGPPGTGKTLLAKAVALESRSRFI-SVKGSELLSKWVGESEKNIRELFEK-----AR---KLAPSIIFIDEIDS  346 (494)
T ss_pred             CCeeEEECCCCCCHHHHHHHHHhhCCCeEE-EeeCHHHhccccchHHHHHHHHHHH-----HH---cCCCcEEEEEchhh
Confidence            348999999999999999999985532221 11111    1122222211111100     00   12368999999999


Q ss_pred             CChH-----------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cce
Q psy17703        421 MSDT-----------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFD  487 (720)
Q Consensus       421 m~~~-----------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFd  487 (720)
                      +-..           ..+.|+..|+...         .  ..++.+|||+|..+             .+++++++  |||
T Consensus       347 ~~~~r~~~~~~~~~r~~~~lL~~~d~~e---------~--~~~v~vi~aTN~p~-------------~ld~a~lR~gRfd  402 (494)
T COG0464         347 LASGRGPSEDGSGRRVVGQLLTELDGIE---------K--AEGVLVIAATNRPD-------------DLDPALLRPGRFD  402 (494)
T ss_pred             hhccCCCCCchHHHHHHHHHHHHhcCCC---------c--cCceEEEecCCCcc-------------ccCHhhcccCccc
Confidence            7432           2333444442111         1  12377999999876             58999999  999


Q ss_pred             eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHH-HHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703        488 LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEE-ASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL  566 (720)
Q Consensus       488 li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~e-a~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl  566 (720)
                      -++.+..|..++..+.+..|+..             ..+.+.++ ..+.+.+    +-.      .  .+...+..+++-
T Consensus       403 ~~i~v~~pd~~~r~~i~~~~~~~-------------~~~~~~~~~~~~~l~~----~t~------~--~sgadi~~i~~e  457 (494)
T COG0464         403 RLIYVPLPDLEERLEIFKIHLRD-------------KKPPLAEDVDLEELAE----ITE------G--YSGADIAALVRE  457 (494)
T ss_pred             eEeecCCCCHHHHHHHHHHHhcc-------------cCCcchhhhhHHHHHH----Hhc------C--CCHHHHHHHHHH
Confidence            99999888877766555544310             11111111 1122221    111      1  234778888887


Q ss_pred             HHHHHHHcC-CCCCCHHhHHHHHH
Q psy17703        567 SEAHAKMRY-SETVEVQDVDEAWR  589 (720)
Q Consensus       567 a~A~A~l~~-~~~V~~~Dv~~Ai~  589 (720)
                      |.-.|..+. ...++.+|+.+|+.
T Consensus       458 a~~~~~~~~~~~~~~~~~~~~a~~  481 (494)
T COG0464         458 AALEALREARRREVTLDDFLDALK  481 (494)
T ss_pred             HHHHHHHHhccCCccHHHHHHHHH
Confidence            777777776 77899999999976

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.82  E-value=5.7e-08  Score=99.62  Aligned_cols=181  Identities=17%  Similarity=0.210  Sum_probs=110.5

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD  423 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~  423 (720)
                      ..-+++|+|+||||||.|++++++.+...    +  ......++....    ...      -.....++++|||++.++.
T Consensus        41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~----~--~~~~~i~~~~~~----~~~------~~~~~~~~liiDdi~~l~~  104 (227)
T PRK08903         41 ADRFFYLWGEAGSGRSHLLQALVADASYG----G--RNARYLDAASPL----LAF------DFDPEAELYAVDDVERLDD  104 (227)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhC----C--CcEEEEehHHhH----HHH------hhcccCCEEEEeChhhcCc
Confidence            34689999999999999999999865210    0  001111110000    000      0123467999999999999


Q ss_pred             HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc--eeEEEecCCChHHHH
Q psy17703        424 TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF--DLIFLLLDPQSEQFD  501 (720)
Q Consensus       424 ~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF--dli~~l~d~~~~~~d  501 (720)
                      ..+..|+.+++...-           .....++.+++....          ...+.+.|.|||  ...+.+.++.++...
T Consensus       105 ~~~~~L~~~~~~~~~-----------~~~~~vl~~~~~~~~----------~~~l~~~L~sr~~~~~~i~l~pl~~~~~~  163 (227)
T PRK08903        105 AQQIALFNLFNRVRA-----------HGQGALLVAGPAAPL----------ALPLREDLRTRLGWGLVYELKPLSDADKI  163 (227)
T ss_pred             hHHHHHHHHHHHHHH-----------cCCcEEEEeCCCCHH----------hCCCCHHHHHHHhcCeEEEecCCCHHHHH
Confidence            888889888864210           112223444442211          113568899999  467778877765422


Q ss_pred             HHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCH
Q psy17703        502 ARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEV  581 (720)
Q Consensus       502 ~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~  581 (720)
                      ..         +++.   +. .....+++++.+.|...             ++.++|++..+++.-.+.|.... ..||.
T Consensus       164 ~~---------l~~~---~~-~~~v~l~~~al~~L~~~-------------~~gn~~~l~~~l~~l~~~~~~~~-~~i~~  216 (227)
T PRK08903        164 AA---------LKAA---AA-ERGLQLADEVPDYLLTH-------------FRRDMPSLMALLDALDRYSLEQK-RPVTL  216 (227)
T ss_pred             HH---------HHHH---HH-HcCCCCCHHHHHHHHHh-------------ccCCHHHHHHHHHHHHHHHHHhC-CCCCH
Confidence            11         2211   22 23577899999888742             45567999998887666665555 57887


Q ss_pred             HhHHHHH
Q psy17703        582 QDVDEAW  588 (720)
Q Consensus       582 ~Dv~~Ai  588 (720)
                      ..+.+++
T Consensus       217 ~~~~~~l  223 (227)
T PRK08903        217 PLLREML  223 (227)
T ss_pred             HHHHHHH
Confidence            7777764

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=98.82  E-value=1.3e-07  Score=107.45  Aligned_cols=184  Identities=16%  Similarity=0.166  Sum_probs=105.0

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCCCCccc----c-----------CCccccccccceeecC-ccccceeeecc-eeeecCC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVPRSQYT----S-----------GKGSSAVGLTAYITKD-PETRQMVLQTG-ALVLADS  410 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~pr~~~~----~-----------g~~ss~~glta~~~~~-~~~~~~~~~~G-~l~lad~  410 (720)
                      .||+||||+|||++++.+++.+......    +           +.......+.++..+. ....+...... .-..+..
T Consensus        39 yLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~  118 (535)
T PRK08451         39 YLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARF  118 (535)
T ss_pred             EEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCe
Confidence            4899999999999999999876321100    0           0001111111100000 00000000000 0112456


Q ss_pred             ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703        411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF  490 (720)
Q Consensus       411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~  490 (720)
                      .|++|||++.|+.+.+++|+..||+-             |..+.+|.++|...             .++++++||+. .|
T Consensus       119 KVvIIDEad~Lt~~A~NALLK~LEEp-------------p~~t~FIL~ttd~~-------------kL~~tI~SRc~-~~  171 (535)
T PRK08451        119 KIFIIDEVHMLTKEAFNALLKTLEEP-------------PSYVKFILATTDPL-------------KLPATILSRTQ-HF  171 (535)
T ss_pred             EEEEEECcccCCHHHHHHHHHHHhhc-------------CCceEEEEEECChh-------------hCchHHHhhce-eE
Confidence            79999999999999999999999862             23344444444222             58899999984 78


Q ss_pred             EecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703        491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH  570 (720)
Q Consensus       491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~  570 (720)
                      .+..++.++..             +++...-+.-...+++++.+.|+...             ..+.|.+..++.-+-+.
T Consensus       172 ~F~~Ls~~ei~-------------~~L~~Il~~EGi~i~~~Al~~Ia~~s-------------~GdlR~alnlLdqai~~  225 (535)
T PRK08451        172 RFKQIPQNSII-------------SHLKTILEKEGVSYEPEALEILARSG-------------NGSLRDTLTLLDQAIIY  225 (535)
T ss_pred             EcCCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCcHHHHHHHHHHHHHh
Confidence            88877765443             23332222234567888888777431             12457776666543333


Q ss_pred             HHHcCCCCCCHHhHHHHH
Q psy17703        571 AKMRYSETVEVQDVDEAW  588 (720)
Q Consensus       571 A~l~~~~~V~~~Dv~~Ai  588 (720)
                      +    ...+|.+++.+.+
T Consensus       226 ~----~~~It~~~V~~~l  239 (535)
T PRK08451        226 C----KNAITESKVADML  239 (535)
T ss_pred             c----CCCCCHHHHHHHh
Confidence            2    3578888887663

>KOG0737|consensus

Probab=98.81  E-value=2.3e-09  Score=113.12  Aligned_cols=135  Identities=24%  Similarity=0.259  Sum_probs=83.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceee-----ec---CCceeecc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALV-----LA---DSGVCCID  416 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~-----la---d~gI~~ID  416 (720)
                      ...|||+||||||||++|+++++.+...         ..++..+...    ..|.-++-.++     +|   ...|+|||
T Consensus       127 ~kGiLL~GPpG~GKTmlAKA~Akeaga~---------fInv~~s~lt----~KWfgE~eKlv~AvFslAsKl~P~iIFID  193 (386)
T KOG0737|consen  127 PKGILLYGPPGTGKTMLAKAIAKEAGAN---------FINVSVSNLT----SKWFGEAQKLVKAVFSLASKLQPSIIFID  193 (386)
T ss_pred             CccceecCCCCchHHHHHHHHHHHcCCC---------cceeeccccc----hhhHHHHHHHHHHHHhhhhhcCcceeehh
Confidence            4689999999999999999999977432         1111111111    12222222221     11   25799999


Q ss_pred             ccccCChHHHHHHHHHHHhc--eEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecC
Q psy17703        417 EFDKMSDTTRSILHEVMEQQ--TLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLD  494 (720)
Q Consensus       417 Eidkm~~~~~~~L~e~mE~~--~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d  494 (720)
                      |+|.|-..-+..=||+|..-  .+-..=+|....-+.++.|+||+|.+.             +|..|+++|+.-.|.+.-
T Consensus       194 Evds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~-------------DlDeAiiRR~p~rf~V~l  260 (386)
T KOG0737|consen  194 EVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPF-------------DLDEAIIRRLPRRFHVGL  260 (386)
T ss_pred             hHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCc-------------cHHHHHHHhCcceeeeCC
Confidence            99887533233334444221  110111455555566899999999665             689999999998888887


Q ss_pred             CChHHHHHHHH
Q psy17703        495 PQSEQFDARLA  505 (720)
Q Consensus       495 ~~~~~~d~~la  505 (720)
                      |..+.+.+++.
T Consensus       261 P~~~qR~kILk  271 (386)
T KOG0737|consen  261 PDAEQRRKILK  271 (386)
T ss_pred             CchhhHHHHHH
Confidence            77665554443

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.81  E-value=2.3e-08  Score=114.81  Aligned_cols=187  Identities=15%  Similarity=0.172  Sum_probs=106.1

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCcccc---------------CCccccccccceeecC-ccccceeeecc-eeeec
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTS---------------GKGSSAVGLTAYITKD-PETRQMVLQTG-ALVLA  408 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~---------------g~~ss~~glta~~~~~-~~~~~~~~~~G-~l~la  408 (720)
                      .++||+||||+|||++++.+++.+.......               |...+...+.+..... ...+....... .-..+
T Consensus        39 ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g  118 (624)
T PRK14959         39 PAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEG  118 (624)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcC
Confidence            4788999999999999999999774321111               1111111110000000 00000000000 00123


Q ss_pred             CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703        409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL  488 (720)
Q Consensus       409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl  488 (720)
                      ...|++|||++.|+.+.+++|+.+||+.             +.++.+|.++|...             .++++++||+. 
T Consensus       119 ~~kVIIIDEad~Lt~~a~naLLk~LEEP-------------~~~~ifILaTt~~~-------------kll~TI~SRcq-  171 (624)
T PRK14959        119 RYKVFIIDEAHMLTREAFNALLKTLEEP-------------PARVTFVLATTEPH-------------KFPVTIVSRCQ-  171 (624)
T ss_pred             CceEEEEEChHhCCHHHHHHHHHHhhcc-------------CCCEEEEEecCChh-------------hhhHHHHhhhh-
Confidence            4579999999999999999999999863             12344555554211             47788999995 


Q ss_pred             EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE  568 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~  568 (720)
                      ++.+...+.++....|.             ..-......+++++.+.|+...             ..+.|....++.-+ 
T Consensus       172 ~i~F~pLs~~eL~~~L~-------------~il~~egi~id~eal~lIA~~s-------------~GdlR~Al~lLeql-  224 (624)
T PRK14959        172 HFTFTRLSEAGLEAHLT-------------KVLGREGVDYDPAAVRLIARRA-------------AGSVRDSMSLLGQV-  224 (624)
T ss_pred             ccccCCCCHHHHHHHHH-------------HHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHH-
Confidence            66777776665433332             2111224457888888877532             12346665555421 


Q ss_pred             HHHHHcCCCCCCHHhHHHHHH
Q psy17703        569 AHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       569 A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                       .  ..+.+.|+.+++..++.
T Consensus       225 -l--~~g~~~It~d~V~~~lg  242 (624)
T PRK14959        225 -L--ALGESRLTIDGARGVLG  242 (624)
T ss_pred             -H--HhcCCCcCHHHHHHHhC
Confidence             1  23456899999887754

>KOG0736|consensus

Probab=98.81  E-value=2.1e-08  Score=113.81  Aligned_cols=131  Identities=25%  Similarity=0.289  Sum_probs=81.3

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcccc----ccccceeecCccccceeeecceeeecCCceeecccccc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSA----VGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK  420 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~----~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk  420 (720)
                      ..-|||+||||||||.+|++||....- .+.+-+|...    +|-.-.-+|+-+.     ++   --|...|+|+||+|.
T Consensus       705 RSGILLYGPPGTGKTLlAKAVATEcsL-~FlSVKGPELLNMYVGqSE~NVR~VFe-----rA---R~A~PCVIFFDELDS  775 (953)
T KOG0736|consen  705 RSGILLYGPPGTGKTLLAKAVATECSL-NFLSVKGPELLNMYVGQSEENVREVFE-----RA---RSAAPCVIFFDELDS  775 (953)
T ss_pred             cceeEEECCCCCchHHHHHHHHhhcee-eEEeecCHHHHHHHhcchHHHHHHHHH-----Hh---hccCCeEEEeccccc
Confidence            458999999999999999999976532 2222232221    1211111111111     11   124568999999999


Q ss_pred             CChH-------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--c
Q psy17703        421 MSDT-------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--R  485 (720)
Q Consensus       421 m~~~-------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--R  485 (720)
                      +.+.             .-..|+.-|         +|....-...+.||||+|.++             -|+|+||+  |
T Consensus       776 lAP~RG~sGDSGGVMDRVVSQLLAEL---------Dgls~~~s~~VFViGATNRPD-------------LLDpALLRPGR  833 (953)
T KOG0736|consen  776 LAPNRGRSGDSGGVMDRVVSQLLAEL---------DGLSDSSSQDVFVIGATNRPD-------------LLDPALLRPGR  833 (953)
T ss_pred             cCccCCCCCCccccHHHHHHHHHHHh---------hcccCCCCCceEEEecCCCcc-------------ccChhhcCCCc
Confidence            8764             122344333         344443445789999999765             48899998  9


Q ss_pred             ceeEEEecCCChHHHHHHHHh
Q psy17703        486 FDLIFLLLDPQSEQFDARLAR  506 (720)
Q Consensus       486 Fdli~~l~d~~~~~~d~~la~  506 (720)
                      ||-.+.+....+++...++-+
T Consensus       834 FDKLvyvG~~~d~esk~~vL~  854 (953)
T KOG0736|consen  834 FDKLVYVGPNEDAESKLRVLE  854 (953)
T ss_pred             cceeEEecCCccHHHHHHHHH
Confidence            997777776666655544433

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.80  E-value=4.9e-08  Score=99.80  Aligned_cols=184  Identities=21%  Similarity=0.282  Sum_probs=109.0

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD  423 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~  423 (720)
                      ..-+++|+|+||||||.+++++++.+...    +  .....+.+....+... .+ +  ..  +...++++|||++.++.
T Consensus        37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~----~--~~~~~i~~~~~~~~~~-~~-~--~~--~~~~~lLvIDdi~~l~~  104 (226)
T TIGR03420        37 GDRFLYLWGESGSGKSHLLQAACAAAEER----G--KSAIYLPLAELAQADP-EV-L--EG--LEQADLVCLDDVEAIAG  104 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhc----C--CcEEEEeHHHHHHhHH-HH-H--hh--cccCCEEEEeChhhhcC
Confidence            45699999999999999999999865321    0  0111111110000000 00 0  00  12346999999999987


Q ss_pred             HH--HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCC-hhhhccce--eEEEecCCChH
Q psy17703        424 TT--RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLP-HTLLSRFD--LIFLLLDPQSE  498 (720)
Q Consensus       424 ~~--~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~-~aLlsRFd--li~~l~d~~~~  498 (720)
                      ..  +..|..+++...    .        .+..+|.++|.....+          .+. +.|.+||.  ..+.+.++..+
T Consensus       105 ~~~~~~~L~~~l~~~~----~--------~~~~iIits~~~~~~~----------~~~~~~L~~r~~~~~~i~l~~l~~~  162 (226)
T TIGR03420       105 QPEWQEALFHLYNRVR----E--------AGGRLLIAGRAAPAQL----------PLRLPDLRTRLAWGLVFQLPPLSDE  162 (226)
T ss_pred             ChHHHHHHHHHHHHHH----H--------cCCeEEEECCCChHHC----------CcccHHHHHHHhcCeeEecCCCCHH
Confidence            44  778888775321    0        0123555666433211          233 78899985  56777777664


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCC
Q psy17703        499 QFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSET  578 (720)
Q Consensus       499 ~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~  578 (720)
                      +....         ++.+   +. .....+++++.+.|...             ++.++|+|..++.-+.+.+.... ..
T Consensus       163 e~~~~---------l~~~---~~-~~~~~~~~~~l~~L~~~-------------~~gn~r~L~~~l~~~~~~~~~~~-~~  215 (226)
T TIGR03420       163 EKIAA---------LQSR---AA-RRGLQLPDEVADYLLRH-------------GSRDMGSLMALLDALDRASLAAK-RK  215 (226)
T ss_pred             HHHHH---------HHHH---HH-HcCCCCCHHHHHHHHHh-------------ccCCHHHHHHHHHHHHHHHHHhC-CC
Confidence            43222         2222   11 12456889998888752             35567999999998887665555 46


Q ss_pred             CCHHhHHHHH
Q psy17703        579 VEVQDVDEAW  588 (720)
Q Consensus       579 V~~~Dv~~Ai  588 (720)
                      |+.+.+.+++
T Consensus       216 i~~~~~~~~~  225 (226)
T TIGR03420       216 ITIPFVKEVL  225 (226)
T ss_pred             CCHHHHHHHh
Confidence            8887777664

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=98.80  E-value=1.7e-08  Score=108.54  Aligned_cols=88  Identities=19%  Similarity=0.089  Sum_probs=69.9

Q ss_pred             cceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChh
Q psy17703        402 TGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHT  481 (720)
Q Consensus       402 ~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~a  481 (720)
                      .|.+..|++||+.++|+.|.+.+.+..|+.+++++.+.+  .|....++.+..|||++|+.+-.  ..+    +...+.|
T Consensus       229 ~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~--~~~~~~~~~d~liia~sNe~e~~--~~~----~~k~~ea  300 (361)
T smart00763      229 DGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKG--TGGFAMIPIDGLIIAHSNESEWQ--RFK----SNKKNEA  300 (361)
T ss_pred             cCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEec--CCcccccccceEEEEeCCHHHHh--hhh----ccccchh
Confidence            489999999999999999999999999999999999987  34555778888999999987521  111    1234699


Q ss_pred             hhccceeEEEecCCChH
Q psy17703        482 LLSRFDLIFLLLDPQSE  498 (720)
Q Consensus       482 LlsRFdli~~l~d~~~~  498 (720)
                      |++||. .+.+.++.+-
T Consensus       301 f~dR~~-~i~vpY~l~~  316 (361)
T smart00763      301 LLDRII-KVKVPYCLRV  316 (361)
T ss_pred             hhhceE-EEeCCCcCCH
Confidence            999998 6666666543

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>KOG0731|consensus

Probab=98.80  E-value=1.5e-08  Score=116.99  Aligned_cols=189  Identities=22%  Similarity=0.198  Sum_probs=109.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCC-ccccCCcc--ccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRS-QYTSGKGS--SAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD  423 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~-~~~~g~~s--s~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~  423 (720)
                      -+||+||||||||.||+++|..+.-. +..+|.+.  ..+|..++.+++-..     .+..  . ...|+||||||....
T Consensus       346 GvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~-----~ar~--~-aP~iifideida~~~  417 (774)
T KOG0731|consen  346 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFP-----LARK--N-APSIIFIDEIDAVGR  417 (774)
T ss_pred             ceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHH-----Hhhc--c-CCeEEEecccccccc
Confidence            69999999999999999999977422 22222211  112222333332111     1110  1 146999999988654


Q ss_pred             HH------------HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeE
Q psy17703        424 TT------------RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLI  489 (720)
Q Consensus       424 ~~------------~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli  489 (720)
                      ..            -..|.+.+-    .  -+|....  ..+.++|++|..+             .|++||++  |||-.
T Consensus       418 ~r~G~~~~~~~~e~e~tlnQll~----e--mDgf~~~--~~vi~~a~tnr~d-------------~ld~allrpGRfdr~  476 (774)
T KOG0731|consen  418 KRGGKGTGGGQDEREQTLNQLLV----E--MDGFETS--KGVIVLAATNRPD-------------ILDPALLRPGRFDRQ  476 (774)
T ss_pred             cccccccCCCChHHHHHHHHHHH----H--hcCCcCC--CcEEEEeccCCcc-------------ccCHHhcCCCccccc
Confidence            22            112333221    1  1343333  5688999999766             58899998  99988


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA  569 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A  569 (720)
                      +.+..|.-..+.+++.-|...             ++  +..+..+.-.  +. .+     ...  .+.-.|..+..-|.-
T Consensus       477 i~i~~p~~~~r~~i~~~h~~~-------------~~--~~~e~~dl~~--~a-~~-----t~g--f~gadl~n~~neaa~  531 (774)
T KOG0731|consen  477 IQIDLPDVKGRASILKVHLRK-------------KK--LDDEDVDLSK--LA-SL-----TPG--FSGADLANLCNEAAL  531 (774)
T ss_pred             eeccCCchhhhHHHHHHHhhc-------------cC--CCcchhhHHH--HH-hc-----CCC--CcHHHHHhhhhHHHH
Confidence            888877777766666655311             11  1111111110  00 00     111  223566667777777


Q ss_pred             HHHHcCCCCCCHHhHHHHHH
Q psy17703        570 HAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       570 ~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      +|.-+.+..|+..|+..|++
T Consensus       532 ~a~r~~~~~i~~~~~~~a~~  551 (774)
T KOG0731|consen  532 LAARKGLREIGTKDLEYAIE  551 (774)
T ss_pred             HHHHhccCccchhhHHHHHH
Confidence            77777888888888888887

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=1.1e-08  Score=115.99  Aligned_cols=131  Identities=29%  Similarity=0.261  Sum_probs=85.1

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCC-ccccCCcc--ccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRS-QYTSGKGS--SAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~-~~~~g~~s--s~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      -.+||+||||||||.|+++++..+.-. .+.+|...  ..+|..++.+++...     ++..  . ...|+||||+|...
T Consensus       184 kGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~-----qAkk--~-aP~IIFIDEiDAvG  255 (596)
T COG0465         184 KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFE-----QAKK--N-APCIIFIDEIDAVG  255 (596)
T ss_pred             cceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHH-----Hhhc--c-CCCeEEEehhhhcc
Confidence            379999999999999999999988533 22333322  224555555554332     1111  1 14799999999876


Q ss_pred             hHH--------------HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cc
Q psy17703        423 DTT--------------RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RF  486 (720)
Q Consensus       423 ~~~--------------~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RF  486 (720)
                      ..-              .+.|+--|         +|..  -+..+.++||+|...             -|++||++  ||
T Consensus       256 r~Rg~g~GggnderEQTLNQlLvEm---------DGF~--~~~gviviaaTNRpd-------------VlD~ALlRpgRF  311 (596)
T COG0465         256 RQRGAGLGGGNDEREQTLNQLLVEM---------DGFG--GNEGVIVIAATNRPD-------------VLDPALLRPGRF  311 (596)
T ss_pred             cccCCCCCCCchHHHHHHHHHHhhh---------ccCC--CCCceEEEecCCCcc-------------cchHhhcCCCCc
Confidence            432              22333333         2322  235678999999665             47889998  99


Q ss_pred             eeEEEecCCChHHHHHHHHhhc
Q psy17703        487 DLIFLLLDPQSEQFDARLARHL  508 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la~~i  508 (720)
                      |-.+.+..|+-..+...+.-|.
T Consensus       312 DRqI~V~~PDi~gRe~IlkvH~  333 (596)
T COG0465         312 DRQILVELPDIKGREQILKVHA  333 (596)
T ss_pred             ceeeecCCcchhhHHHHHHHHh
Confidence            9888887776666666666554

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.77  E-value=6.4e-08  Score=99.90  Aligned_cols=187  Identities=18%  Similarity=0.181  Sum_probs=103.2

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD  423 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~  423 (720)
                      +.-+++|+||||+|||.|++++++.+...    |  .....++...... ...+. .+  .  +..-.+++|||++.++.
T Consensus        44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~----~--~~v~y~~~~~~~~-~~~~~-~~--~--~~~~dlliiDdi~~~~~  111 (235)
T PRK08084         44 HSGYIYLWSREGAGRSHLLHAACAELSQR----G--RAVGYVPLDKRAW-FVPEV-LE--G--MEQLSLVCIDNIECIAG  111 (235)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhC----C--CeEEEEEHHHHhh-hhHHH-HH--H--hhhCCEEEEeChhhhcC
Confidence            44689999999999999999988754321    0  0111111100000 00000 00  0  01124799999999864


Q ss_pred             H--HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCCChHH
Q psy17703        424 T--TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDPQSEQ  499 (720)
Q Consensus       424 ~--~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~~~~~  499 (720)
                      +  .+..|..++....    .       ..+..++.|+|-.+..|.         .+.+.|.|||.  +++.+.+|++++
T Consensus       112 ~~~~~~~lf~l~n~~~----e-------~g~~~li~ts~~~p~~l~---------~~~~~L~SRl~~g~~~~l~~~~~~~  171 (235)
T PRK08084        112 DELWEMAIFDLYNRIL----E-------SGRTRLLITGDRPPRQLN---------LGLPDLASRLDWGQIYKLQPLSDEE  171 (235)
T ss_pred             CHHHHHHHHHHHHHHH----H-------cCCCeEEEeCCCChHHcC---------cccHHHHHHHhCCceeeecCCCHHH
Confidence            3  3444444433210    0       012234444543333332         25689999997  788888887766


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCC
Q psy17703        500 FDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETV  579 (720)
Q Consensus       500 ~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V  579 (720)
                      ..+.+.+            .|... .-.+++++.++|...+             +-+.|.++.++.... .+.+.....|
T Consensus       172 ~~~~l~~------------~a~~~-~~~l~~~v~~~L~~~~-------------~~d~r~l~~~l~~l~-~~~l~~~~~i  224 (235)
T PRK08084        172 KLQALQL------------RARLR-GFELPEDVGRFLLKRL-------------DREMRTLFMTLDQLD-RASITAQRKL  224 (235)
T ss_pred             HHHHHHH------------HHHHc-CCCCCHHHHHHHHHhh-------------cCCHHHHHHHHHHHH-HHHHhcCCCC
Confidence            5444331            12222 4578999999988543             224577877666543 3334433568


Q ss_pred             CHHhHHHHHH
Q psy17703        580 EVQDVDEAWR  589 (720)
Q Consensus       580 ~~~Dv~~Ai~  589 (720)
                      |.+.+++++.
T Consensus       225 t~~~~k~~l~  234 (235)
T PRK08084        225 TIPFVKEILK  234 (235)
T ss_pred             CHHHHHHHHc
Confidence            9888888764

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.76  E-value=1.3e-07  Score=108.57  Aligned_cols=181  Identities=19%  Similarity=0.192  Sum_probs=102.8

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCCCCcccc----CC-----------ccccccccceeecC-ccccc----eeeecceeee
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVPRSQYTS----GK-----------GSSAVGLTAYITKD-PETRQ----MVLQTGALVL  407 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~pr~~~~~----g~-----------~ss~~glta~~~~~-~~~~~----~~~~~G~l~l  407 (720)
                      +||+||||+|||++++.+++.+......+    |.           ......+.++.... ...++    ....|   ..
T Consensus        41 ~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p---~~  117 (527)
T PRK14969         41 YLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAP---TR  117 (527)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCc---cc
Confidence            58999999999999999999773211111    10           00000111100000 00000    00111   12


Q ss_pred             cCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEE-ecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703        408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSIL-AAANPCDSQWNTSKTIIDNIRLPHTLLSRF  486 (720)
Q Consensus       408 ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~ii-aaaNp~~g~~~~~~~~~~~~~l~~aLlsRF  486 (720)
                      +...|++|||+|+|+.+.+++|+..||+-             |..+.+| +|+||.              .++++++||+
T Consensus       118 ~~~kVvIIDEad~ls~~a~naLLK~LEep-------------p~~~~fIL~t~d~~--------------kil~tI~SRc  170 (527)
T PRK14969        118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEP-------------PEHVKFILATTDPQ--------------KIPVTVLSRC  170 (527)
T ss_pred             CCceEEEEcCcccCCHHHHHHHHHHHhCC-------------CCCEEEEEEeCChh--------------hCchhHHHHH
Confidence            34579999999999999999999999863             2233344 443432              3777899999


Q ss_pred             eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703        487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL  566 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl  566 (720)
                       .+|.+..++.++....             +...-..-.-.+++++.+.|....             ..++|...+++.-
T Consensus       171 -~~~~f~~l~~~~i~~~-------------L~~il~~egi~~~~~al~~la~~s-------------~Gslr~al~lldq  223 (527)
T PRK14969        171 -LQFNLKQMPPPLIVSH-------------LQHILEQENIPFDATALQLLARAA-------------AGSMRDALSLLDQ  223 (527)
T ss_pred             -HHHhcCCCCHHHHHHH-------------HHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHH
Confidence             5778877766544322             222111113346777777766431             1234766666543


Q ss_pred             HHHHHHHcCCCCCCHHhHHHHHH
Q psy17703        567 SEAHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       567 a~A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      +-  +.  +...|+.+++...+.
T Consensus       224 ai--~~--~~~~I~~~~v~~~~~  242 (527)
T PRK14969        224 AI--AY--GGGTVNESEVRAMLG  242 (527)
T ss_pred             HH--Hh--cCCCcCHHHHHHHHC
Confidence            32  22  467899998888754

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=98.76  E-value=8.7e-08  Score=114.41  Aligned_cols=197  Identities=17%  Similarity=0.204  Sum_probs=126.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCc-cccCC-ccccccccceeecCccccceeee--cceeeecCCceeecccccc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQ-YTSGK-GSSAVGLTAYITKDPETRQMVLQ--TGALVLADSGVCCIDEFDK  420 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~-~~~g~-~ss~~glta~~~~~~~~~~~~~~--~G~l~lad~gI~~IDEidk  420 (720)
                      .-++||.|.||+|||.|+.++|+...... ...-. -+....+.++...-...|++...  |-.-.+.+||.+++||++-
T Consensus      1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNL 1622 (4600)
T COG5271        1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINL 1622 (4600)
T ss_pred             CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhh
Confidence            35899999999999999999999775422 11111 11222333332222233443322  2222345899999999999


Q ss_pred             CChHHHHHHHHHHHhc-eEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHH
Q psy17703        421 MSDTTRSILHEVMEQQ-TLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQ  499 (720)
Q Consensus       421 m~~~~~~~L~e~mE~~-~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~  499 (720)
                      .+.+..+.|...++.+ ...|....+....+.+|.|+||.||.+.+....       .||.++++||-.++.=....++ 
T Consensus      1623 aSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRK-------gLPkSF~nRFsvV~~d~lt~dD- 1694 (4600)
T COG5271        1623 ASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRK-------GLPKSFLNRFSVVKMDGLTTDD- 1694 (4600)
T ss_pred             hHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcc-------cCCHHHhhhhheEEecccccch-
Confidence            9999999999999864 566767777788889999999999987653332       6999999999866543333322 


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhc-------CCCCCCcccCHHHHHHHHHH
Q psy17703        500 FDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKL-------GAGRGRISAYPRQLESLIRL  566 (720)
Q Consensus       500 ~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~-------~~~~~~~~~t~R~le~lirl  566 (720)
                      .- .|+                ....|.+.++-...++.+...+...       +....+|..+.|.-.+|+.+
T Consensus      1695 i~-~Ia----------------~~~yp~v~~d~~~kiik~ms~lqd~i~k~~~~g~~gsPwefnlrdTLRwl~l 1751 (4600)
T COG5271        1695 IT-HIA----------------NKMYPQVNEDWRLKIIKFMSRLQDNIEKDISFGSFGSPWEFNLRDTLRWLIL 1751 (4600)
T ss_pred             HH-HHH----------------HhhCCccChHHHHHHHHHHHHHHHhhhhhhcccCCCCCeEEehHHHHHHHHH
Confidence            11 122                1357777777777776665543221       22234666666655554433

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=98.76  E-value=3e-08  Score=118.74  Aligned_cols=127  Identities=28%  Similarity=0.324  Sum_probs=75.1

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCc--cccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKG--SSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~--ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      ..+||+||||||||+++++++..+....+. .+..  +..+|.+...+     +.....+   ......|+||||+|.+.
T Consensus       488 ~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i-----~~~f~~A---~~~~p~iifiDEid~l~  559 (733)
T TIGR01243       488 KGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAI-----REIFRKA---RQAAPAIIFFDEIDAIA  559 (733)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHH-----HHHHHHH---HhcCCEEEEEEChhhhh
Confidence            369999999999999999999876432211 1100  00011110000     0000001   01235799999999874


Q ss_pred             hH------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--ccee
Q psy17703        423 DT------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDL  488 (720)
Q Consensus       423 ~~------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdl  488 (720)
                      +.            ..+.|+..|+.         .  .-+.++.||||+|...             .|++++++  |||.
T Consensus       560 ~~r~~~~~~~~~~~~~~~lL~~ldg---------~--~~~~~v~vI~aTn~~~-------------~ld~allRpgRfd~  615 (733)
T TIGR01243       560 PARGARFDTSVTDRIVNQLLTEMDG---------I--QELSNVVVIAATNRPD-------------ILDPALLRPGRFDR  615 (733)
T ss_pred             ccCCCCCCccHHHHHHHHHHHHhhc---------c--cCCCCEEEEEeCCChh-------------hCCHhhcCCCccce
Confidence            21            22334444432         1  1134688999999765             58999996  9999


Q ss_pred             EEEecCCChHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARL  504 (720)
Q Consensus       489 i~~l~d~~~~~~d~~l  504 (720)
                      ++.+..|..+++...+
T Consensus       616 ~i~v~~Pd~~~R~~i~  631 (733)
T TIGR01243       616 LILVPPPDEEARKEIF  631 (733)
T ss_pred             EEEeCCcCHHHHHHHH
Confidence            8888877766554443

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG1942|consensus

Probab=98.76  E-value=1.1e-07  Score=97.02  Aligned_cols=145  Identities=23%  Similarity=0.239  Sum_probs=99.0

Q ss_pred             CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      .|++||||++-++-+-...||.++|.-.              --.+|.|+|.-.+.-.+...+..-..+|+.|++|.-++
T Consensus       297 PGVLFIDEVhMLDiEcFTyL~kalES~i--------------aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Ii  362 (456)
T KOG1942|consen  297 PGVLFIDEVHMLDIECFTYLHKALESPI--------------APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLII  362 (456)
T ss_pred             CcceEeeehhhhhhHHHHHHHHHhcCCC--------------CceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEE
Confidence            4789999999999999999999998532              12466777765444444455556678999999999644


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA  569 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A  569 (720)
                      -.+.++ +++....|...            | +.-.-.+++++...+...            +...|.|....|+.=+--
T Consensus       363 rt~~y~-~~e~r~Ii~~R------------a-~~E~l~~~e~a~~~l~~~------------gt~tsLRy~vqLl~p~~~  416 (456)
T KOG1942|consen  363 RTLPYD-EEEIRQIIKIR------------A-QVEGLQVEEEALDLLAEI------------GTSTSLRYAVQLLTPASI  416 (456)
T ss_pred             eeccCC-HHHHHHHHHHH------------H-hhhcceecHHHHHHHHhh------------ccchhHHHHHHhcCHHHH
Confidence            444444 44444333311            1 112445677777766532            122334666677777778


Q ss_pred             HHHHcCCCCCCHHhHHHHHHHHHHH
Q psy17703        570 HAKMRYSETVEVQDVDEAWRLHREA  594 (720)
Q Consensus       570 ~A~l~~~~~V~~~Dv~~Ai~l~~~~  594 (720)
                      .|+..+++.+..+|++++-.||.++
T Consensus       417 ~ak~~g~~~i~v~dvee~~~Lf~Da  441 (456)
T KOG1942|consen  417 LAKTNGRKEISVEDVEEVTELFLDA  441 (456)
T ss_pred             HHHHcCCceeecccHHHHHHHHHhc
Confidence            9999999999999999999998654

>KOG0733|consensus

Probab=98.76  E-value=7.3e-09  Score=114.72  Aligned_cols=141  Identities=19%  Similarity=0.219  Sum_probs=81.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHH
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTT  425 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~  425 (720)
                      --|||+||||||||+||+++|+.+.-..+.-.-..-..|..+.-  ....++..-++-   .....|+||||||.+.+.-
T Consensus       224 rGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGES--EkkiRelF~~A~---~~aPcivFiDeIDAI~pkR  298 (802)
T KOG0733|consen  224 RGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGES--EKKIRELFDQAK---SNAPCIVFIDEIDAITPKR  298 (802)
T ss_pred             CceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCccc--HHHHHHHHHHHh---ccCCeEEEeecccccccch
Confidence            36999999999999999999997743333211111111111110  000111111111   1135799999999998754


Q ss_pred             HHHHHHHHHhceEeee---ccCe--EEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeEEEecCCChH
Q psy17703        426 RSILHEVMEQQTLSIA---KAGI--ICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLIFLLLDPQSE  498 (720)
Q Consensus       426 ~~~L~e~mE~~~vsi~---k~g~--~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli~~l~d~~~~  498 (720)
                      .. -.+-||++.|+--   -++.  ..+....+.||||+|.+.             -|.++|.+  |||--+.+.-|+..
T Consensus       299 e~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD-------------slDpaLRRaGRFdrEI~l~vP~e~  364 (802)
T KOG0733|consen  299 EE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD-------------SLDPALRRAGRFDREICLGVPSET  364 (802)
T ss_pred             hh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc-------------ccCHHHhccccccceeeecCCchH
Confidence            33 2334555443210   0111  122346799999999776             47888887  99987777777666


Q ss_pred             HHHHHHH
Q psy17703        499 QFDARLA  505 (720)
Q Consensus       499 ~~d~~la  505 (720)
                      .+.++|.
T Consensus       365 aR~~IL~  371 (802)
T KOG0733|consen  365 AREEILR  371 (802)
T ss_pred             HHHHHHH
Confidence            5555443

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.76  E-value=7.9e-08  Score=109.35  Aligned_cols=185  Identities=20%  Similarity=0.198  Sum_probs=104.4

Q ss_pred             cE-EEEcCCCCHHHHHHHHHHhhCCCC--cc-cc-----------CCccccccccceeecCc-cccceeeecce-eeecC
Q psy17703        347 NI-LLCGDPGTSKSQLLSYVYDLVPRS--QY-TS-----------GKGSSAVGLTAYITKDP-ETRQMVLQTGA-LVLAD  409 (720)
Q Consensus       347 ~v-LL~G~PGtGKS~ll~~va~~~pr~--~~-~~-----------g~~ss~~glta~~~~~~-~~~~~~~~~G~-l~lad  409 (720)
                      |. ||+||||||||++++++++.+...  .. .+           +.......+.+...... ..++..-.... -..+.
T Consensus        37 ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~  116 (504)
T PRK14963         37 HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGG  116 (504)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCC
Confidence            55 999999999999999999976321  00 00           11111111111100000 00011000011 12345


Q ss_pred             CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      ..+++|||++.|+.+.+++|+..||+..             ..+.+|.++|...             .+++++.||+. .
T Consensus       117 ~kVVIIDEad~ls~~a~naLLk~LEep~-------------~~t~~Il~t~~~~-------------kl~~~I~SRc~-~  169 (504)
T PRK14963        117 RKVYILDEAHMMSKSAFNALLKTLEEPP-------------EHVIFILATTEPE-------------KMPPTILSRTQ-H  169 (504)
T ss_pred             CeEEEEECccccCHHHHHHHHHHHHhCC-------------CCEEEEEEcCChh-------------hCChHHhcceE-E
Confidence            6799999999999999999999998631             2234444444221             48899999996 7


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA  569 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A  569 (720)
                      |.+..++.++..             +++...-+.-.-.+++++.+.|....             ....|.+..++.-.-+
T Consensus       170 ~~f~~ls~~el~-------------~~L~~i~~~egi~i~~~Al~~ia~~s-------------~GdlR~aln~Lekl~~  223 (504)
T PRK14963        170 FRFRRLTEEEIA-------------GKLRRLLEAEGREAEPEALQLVARLA-------------DGAMRDAESLLERLLA  223 (504)
T ss_pred             EEecCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHHh
Confidence            788877666543             33333222224456888888876432             1234666555443211


Q ss_pred             HHHHcCCCCCCHHhHHHHHH
Q psy17703        570 HAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       570 ~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                           ....+|.+++..++.
T Consensus       224 -----~~~~It~~~V~~~l~  238 (504)
T PRK14963        224 -----LGTPVTRKQVEEALG  238 (504)
T ss_pred             -----cCCCCCHHHHHHHHC
Confidence                 134788888887754

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=98.75  E-value=2.1e-07  Score=107.47  Aligned_cols=184  Identities=20%  Similarity=0.191  Sum_probs=104.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCccccC---------------CccccccccceeecCc-cccceeeecc-eeeecC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSG---------------KGSSAVGLTAYITKDP-ETRQMVLQTG-ALVLAD  409 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g---------------~~ss~~glta~~~~~~-~~~~~~~~~G-~l~lad  409 (720)
                      ..||+||||||||++++.+++.+.......+               .......+.++..... ..++..-... .-..+.
T Consensus        40 ayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~  119 (559)
T PRK05563         40 AYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAK  119 (559)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCC
Confidence            3788999999999999999997642211111               1111111111000000 0000000000 011345


Q ss_pred             CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEE-ecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSIL-AAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL  488 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~ii-aaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl  488 (720)
                      ..|++|||++.|+....++|+..||+-             |..+.+| +|++|.              .++++++||+. 
T Consensus       120 ~kViIIDE~~~Lt~~a~naLLKtLEep-------------p~~~ifIlatt~~~--------------ki~~tI~SRc~-  171 (559)
T PRK05563        120 YKVYIIDEVHMLSTGAFNALLKTLEEP-------------PAHVIFILATTEPH--------------KIPATILSRCQ-  171 (559)
T ss_pred             eEEEEEECcccCCHHHHHHHHHHhcCC-------------CCCeEEEEEeCChh--------------hCcHHHHhHhe-
Confidence            679999999999999999999999853             2334444 444432              48899999996 


Q ss_pred             EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE  568 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~  568 (720)
                      .|.+..++.++...             ++.+.-+.....+++++.+.++...             ..++|...+++.-+.
T Consensus       172 ~~~f~~~~~~ei~~-------------~L~~i~~~egi~i~~~al~~ia~~s-------------~G~~R~al~~Ldq~~  225 (559)
T PRK05563        172 RFDFKRISVEDIVE-------------RLKYILDKEGIEYEDEALRLIARAA-------------EGGMRDALSILDQAI  225 (559)
T ss_pred             EEecCCCCHHHHHH-------------HHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHH
Confidence            67777666554332             2322222234567888877776431             123476666665333


Q ss_pred             HHHHHcCCCCCCHHhHHHHH
Q psy17703        569 AHAKMRYSETVEVQDVDEAW  588 (720)
Q Consensus       569 A~A~l~~~~~V~~~Dv~~Ai  588 (720)
                      +.    ..+.++.+|+..++
T Consensus       226 ~~----~~~~It~~~V~~vl  241 (559)
T PRK05563        226 SF----GDGKVTYEDALEVT  241 (559)
T ss_pred             Hh----ccCCCCHHHHHHHh
Confidence            32    24578888888764

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=98.75  E-value=1.6e-07  Score=101.85  Aligned_cols=123  Identities=15%  Similarity=0.199  Sum_probs=76.0

Q ss_pred             cCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEeccc-CCCCCCCCCcccccccCCChhhhccc
Q psy17703        408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAAN-PCDSQWNTSKTIIDNIRLPHTLLSRF  486 (720)
Q Consensus       408 ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaN-p~~g~~~~~~~~~~~~~l~~aLlsRF  486 (720)
                      ++..+++|||++.++++.+..|+..|++..             ..+.+|.++| +.              .+.++|.+|+
T Consensus       124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~~-------------~~~~~Il~~~~~~--------------~~~~~L~sr~  176 (337)
T PRK12402        124 ADYKTILLDNAEALREDAQQALRRIMEQYS-------------RTCRFIIATRQPS--------------KLIPPIRSRC  176 (337)
T ss_pred             CCCcEEEEeCcccCCHHHHHHHHHHHHhcc-------------CCCeEEEEeCChh--------------hCchhhcCCc
Confidence            456799999999999988999999987531             1233444443 32              2567899998


Q ss_pred             eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703        487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL  566 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl  566 (720)
                      . .+.+.+++.++..             +++...-..-...+++++.+.+....             +.+.|.+...+. 
T Consensus       177 ~-~v~~~~~~~~~~~-------------~~l~~~~~~~~~~~~~~al~~l~~~~-------------~gdlr~l~~~l~-  228 (337)
T PRK12402        177 L-PLFFRAPTDDELV-------------DVLESIAEAEGVDYDDDGLELIAYYA-------------GGDLRKAILTLQ-  228 (337)
T ss_pred             e-EEEecCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHH-
Confidence            5 5666666554432             22222222234568899998887542             123466544333 


Q ss_pred             HHHHHHHcCCCCCCHHhHHHHHH
Q psy17703        567 SEAHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       567 a~A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                        ..+  .....||.+|+.+++.
T Consensus       229 --~~~--~~~~~It~~~v~~~~~  247 (337)
T PRK12402        229 --TAA--LAAGEITMEAAYEALG  247 (337)
T ss_pred             --HHH--HcCCCCCHHHHHHHhC
Confidence              222  2235799999988754

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=98.75  E-value=6.5e-08  Score=106.77  Aligned_cols=141  Identities=17%  Similarity=0.178  Sum_probs=83.5

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCcc------cc-CCccccccccceeecCccccceeeeccee----ee-----
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQY------TS-GKGSSAVGLTAYITKDPETRQMVLQTGAL----VL-----  407 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~------~~-g~~ss~~glta~~~~~~~~~~~~~~~G~l----~l-----  407 (720)
                      ..-|++|+|+||||||++|+.++..+.....      ++ +...+......+..  +....+...+|.+    ..     
T Consensus       193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r--P~~vgy~~~~G~f~~~~~~A~~~p  270 (459)
T PRK11331        193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR--PNGVGFRRKDGIFYNFCQQAKEQP  270 (459)
T ss_pred             cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC--CCCCCeEecCchHHHHHHHHHhcc
Confidence            4569999999999999999999987632100      00 00000000000000  0111233334422    01     


Q ss_pred             cCCceeeccccccCChHH-HHHHHHHHHhce------Eee--ec-cCeEEeecCceEEEecccCCCCCCCCCcccccccC
Q psy17703        408 ADSGVCCIDEFDKMSDTT-RSILHEVMEQQT------LSI--AK-AGIICQLNARTSILAAANPCDSQWNTSKTIIDNIR  477 (720)
Q Consensus       408 ad~gI~~IDEidkm~~~~-~~~L~e~mE~~~------vsi--~k-~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~  477 (720)
                      ..+.+++|||+|+.+.+. ...+..+||.+.      +.+  .. .+....+|.++.||||||..+..      +   ..
T Consensus       271 ~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs------~---~~  341 (459)
T PRK11331        271 EKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRS------L---AV  341 (459)
T ss_pred             cCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccc------h---hh
Confidence            135689999999999654 667788888541      221  11 23356789999999999977622      1   14


Q ss_pred             CChhhhccceeEEEecCC
Q psy17703        478 LPHTLLSRFDLIFLLLDP  495 (720)
Q Consensus       478 l~~aLlsRFdli~~l~d~  495 (720)
                      ++.||++||..+-..++.
T Consensus       342 lD~AlrRRF~fi~i~p~~  359 (459)
T PRK11331        342 VDYALRRRFSFIDIEPGF  359 (459)
T ss_pred             ccHHHHhhhheEEecCCC
Confidence            899999999754444333

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.74  E-value=1.5e-07  Score=106.11  Aligned_cols=185  Identities=15%  Similarity=0.198  Sum_probs=103.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCC----cccc-----------CCccccccccceeecC-ccccceeeecc-eeeec
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRS----QYTS-----------GKGSSAVGLTAYITKD-PETRQMVLQTG-ALVLA  408 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~-----------g~~ss~~glta~~~~~-~~~~~~~~~~G-~l~la  408 (720)
                      .++||+||||+|||++|+.+++.+...    .-.+           +.......+.++-... ...++..-... .-..+
T Consensus        36 ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~  115 (491)
T PRK14964         36 QSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISS  115 (491)
T ss_pred             ceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccC
Confidence            369999999999999999999865211    0000           1111111111110000 00000000000 00234


Q ss_pred             CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703        409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL  488 (720)
Q Consensus       409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl  488 (720)
                      ...+++|||++.|+.+.+++|+..||+-             |..+.+|.++|...             +++++++||+- 
T Consensus       116 ~~KVvIIDEah~Ls~~A~NaLLK~LEeP-------------p~~v~fIlatte~~-------------Kl~~tI~SRc~-  168 (491)
T PRK14964        116 KFKVYIIDEVHMLSNSAFNALLKTLEEP-------------APHVKFILATTEVK-------------KIPVTIISRCQ-  168 (491)
T ss_pred             CceEEEEeChHhCCHHHHHHHHHHHhCC-------------CCCeEEEEEeCChH-------------HHHHHHHHhhe-
Confidence            5679999999999999999999999863             23344444444221             48899999994 


Q ss_pred             EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE  568 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~  568 (720)
                      .|.+..++.++..             +++...-+.-...+++++.+.|.+..             ..+.|.+.+++.-+-
T Consensus       169 ~~~f~~l~~~el~-------------~~L~~ia~~Egi~i~~eAL~lIa~~s-------------~GslR~alslLdqli  222 (491)
T PRK14964        169 RFDLQKIPTDKLV-------------EHLVDIAKKENIEHDEESLKLIAENS-------------SGSMRNALFLLEQAA  222 (491)
T ss_pred             eeecccccHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHH
Confidence            6777766655432             33333222235578888888776432             123466555554332


Q ss_pred             HHHHHcCCCCCCHHhHHHH
Q psy17703        569 AHAKMRYSETVEVQDVDEA  587 (720)
Q Consensus       569 A~A~l~~~~~V~~~Dv~~A  587 (720)
                      +.+    .+.|+.+++.+.
T Consensus       223 ~y~----~~~It~e~V~~l  237 (491)
T PRK14964        223 IYS----NNKISEKSVRDL  237 (491)
T ss_pred             Hhc----CCCCCHHHHHHH
Confidence            222    236777777664

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.74  E-value=9e-08  Score=110.64  Aligned_cols=122  Identities=20%  Similarity=0.173  Sum_probs=78.2

Q ss_pred             CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecc-cCCCCCCCCCcccccccCCChhhhcccee
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAA-NPCDSQWNTSKTIIDNIRLPHTLLSRFDL  488 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaa-Np~~g~~~~~~~~~~~~~l~~aLlsRFdl  488 (720)
                      ..|++|||++.|+.+.+++|+..||+-             |..+.+|.++ +|.              +++++++||+ .
T Consensus       125 ~KV~IIDEvh~Ls~~a~NaLLKtLEEP-------------P~~~~fIL~Ttd~~--------------kil~TIlSRc-~  176 (618)
T PRK14951        125 FKVFMIDEVHMLTNTAFNAMLKTLEEP-------------PEYLKFVLATTDPQ--------------KVPVTVLSRC-L  176 (618)
T ss_pred             ceEEEEEChhhCCHHHHHHHHHhcccC-------------CCCeEEEEEECCch--------------hhhHHHHHhc-e
Confidence            469999999999999999999999862             2334444444 332              3778899999 5


Q ss_pred             EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE  568 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~  568 (720)
                      +|.+...+.++....             +...-....-.+++++.+.|....             ..+.|.+.+++.-+ 
T Consensus       177 ~~~f~~Ls~eei~~~-------------L~~i~~~egi~ie~~AL~~La~~s-------------~GslR~al~lLdq~-  229 (618)
T PRK14951        177 QFNLRPMAPETVLEH-------------LTQVLAAENVPAEPQALRLLARAA-------------RGSMRDALSLTDQA-  229 (618)
T ss_pred             eeecCCCCHHHHHHH-------------HHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHH-
Confidence            888887776544322             222212224456778877776431             12457777665322 


Q ss_pred             HHHHHcCCCCCCHHhHHHHHH
Q psy17703        569 AHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       569 A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                       .+.  +...|+.+++..++.
T Consensus       230 -ia~--~~~~It~~~V~~~Lg  247 (618)
T PRK14951        230 -IAF--GSGQLQEAAVRQMLG  247 (618)
T ss_pred             -HHh--cCCCcCHHHHHHHHc
Confidence             222  345788888887754

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=98.74  E-value=2.4e-07  Score=110.97  Aligned_cols=130  Identities=22%  Similarity=0.248  Sum_probs=77.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCcc--ccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGS--SAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~s--s~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      .-++||+||||||||++++++++.+....+. ++...  ...|......     ......+   ......++||||+|.+
T Consensus       212 ~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l-----~~lf~~a---~~~~p~il~iDEid~l  283 (733)
T TIGR01243       212 PKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERL-----REIFKEA---EENAPSIIFIDEIDAI  283 (733)
T ss_pred             CceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHH-----HHHHHHH---HhcCCcEEEeehhhhh
Confidence            3579999999999999999999977543221 11100  0000000000     0000000   0112469999999887


Q ss_pred             Ch-----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--ccee
Q psy17703        422 SD-----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDL  488 (720)
Q Consensus       422 ~~-----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdl  488 (720)
                      .+           ..+..|+..|+...           -..++.+++|+|+..             .+++++.+  |||.
T Consensus       284 ~~~r~~~~~~~~~~~~~~Ll~~ld~l~-----------~~~~vivI~atn~~~-------------~ld~al~r~gRfd~  339 (733)
T TIGR01243       284 APKREEVTGEVEKRVVAQLLTLMDGLK-----------GRGRVIVIGATNRPD-------------ALDPALRRPGRFDR  339 (733)
T ss_pred             cccccCCcchHHHHHHHHHHHHhhccc-----------cCCCEEEEeecCChh-------------hcCHHHhCchhccE
Confidence            43           23456777775321           123578899999764             47888887  9998


Q ss_pred             EEEecCCChHHHHHHHHh
Q psy17703        489 IFLLLDPQSEQFDARLAR  506 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la~  506 (720)
                      .+.+..|+.++....+..
T Consensus       340 ~i~i~~P~~~~R~~Il~~  357 (733)
T TIGR01243       340 EIVIRVPDKRARKEILKV  357 (733)
T ss_pred             EEEeCCcCHHHHHHHHHH
Confidence            888888876665555543

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=98.74  E-value=5.4e-07  Score=109.07  Aligned_cols=50  Identities=22%  Similarity=0.326  Sum_probs=38.2

Q ss_pred             CCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCC
Q psy17703        662 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP  713 (720)
Q Consensus       662 ~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p  713 (720)
                      .++..+||++++..+....++.+|++..+.-.+ |....+ .+|.|+.++|-
T Consensus       671 ~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~-gr~vd~-rn~iiI~TSN~  720 (857)
T PRK10865        671 YSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQ-GRTVDF-RNTVVIMTSNL  720 (857)
T ss_pred             CCeEEEeehhhCCHHHHHHHHHHHhhCceecCC-ceEEee-cccEEEEeCCc
Confidence            357899999999999999999999998886432 333333 24777888885

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=98.73  E-value=6e-08  Score=115.72  Aligned_cols=176  Identities=14%  Similarity=0.253  Sum_probs=125.8

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCcc-c-cCCccccccccceeecCccccceeeecceeeec--CCceeeccccc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQY-T-SGKGSSAVGLTAYITKDPETRQMVLQTGALVLA--DSGVCCIDEFD  419 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~-~g~~ss~~glta~~~~~~~~~~~~~~~G~l~la--d~gI~~IDEid  419 (720)
                      ...++|+-||+.+|||.++.|+++...+-.. . .+..+......+.++.+ .+|...++.|.++-|  .|..+.+||++
T Consensus       887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTd-d~G~lsFkEGvLVeAlR~GyWIVLDELN  965 (4600)
T COG5271         887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTD-DDGSLSFKEGVLVEALRRGYWIVLDELN  965 (4600)
T ss_pred             cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeec-CCCceeeehhHHHHHHhcCcEEEeeccc
Confidence            5679999999999999999999998865422 2 22223333333333333 346677888888765  56688999999


Q ss_pred             cCChHHHHHHHHHHHh-ceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChH
Q psy17703        420 KMSDTTRSILHEVMEQ-QTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSE  498 (720)
Q Consensus       420 km~~~~~~~L~e~mE~-~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~  498 (720)
                      -++.+..++|.+.+++ +.+.|........-+.+|.++||.||+++ |.+.|      .|+.|+..|| +-..+.|.|..
T Consensus       966 LApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~-YgGRK------~LSrAFRNRF-lE~hFddiped 1037 (4600)
T COG5271         966 LAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGG-YGGRK------GLSRAFRNRF-LEMHFDDIPED 1037 (4600)
T ss_pred             cCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCcc-ccchH------HHHHHHHhhh-HhhhcccCcHH
Confidence            9999999999999975 66777766666666789999999999764 44444      4889999999 45566777777


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhc
Q psy17703        499 QFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKL  546 (720)
Q Consensus       499 ~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~  546 (720)
                      +...++..                  +..+.+.-+..+++.|..++..
T Consensus      1038 Ele~ILh~------------------rc~iapSyakKiVeVyr~Ls~r 1067 (4600)
T COG5271        1038 ELEEILHG------------------RCEIAPSYAKKIVEVYRGLSSR 1067 (4600)
T ss_pred             HHHHHHhc------------------cCccCHHHHHHHHHHHHHhhhh
Confidence            66555442                  2344455566778888776543

>PRK06620 hypothetical protein; Validated

Probab=98.72  E-value=3e-07  Score=93.48  Aligned_cols=166  Identities=16%  Similarity=0.181  Sum_probs=96.9

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHH
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTT  425 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~  425 (720)
                      -.++|+||||+|||.|++++++.... .+.+.               .....     .  ......++||||++.+....
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-~~~~~---------------~~~~~-----~--~~~~~d~lliDdi~~~~~~~  101 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNA-YIIKD---------------IFFNE-----E--ILEKYNAFIIEDIENWQEPA  101 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCC-EEcch---------------hhhch-----h--HHhcCCEEEEeccccchHHH
Confidence            45999999999999999998765421 11110               00000     0  01234689999999765322


Q ss_pred             HHHHHH-HHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCCChHHHHH
Q psy17703        426 RSILHE-VMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDPQSEQFDA  502 (720)
Q Consensus       426 ~~~L~e-~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~~~~~~d~  502 (720)
                      .-.++. +.|.+.               ..++++..+..           .+.+ ++|.||+.  +++.+..|.++....
T Consensus       102 lf~l~N~~~e~g~---------------~ilits~~~p~-----------~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~  154 (214)
T PRK06620        102 LLHIFNIINEKQK---------------YLLLTSSDKSR-----------NFTL-PDLSSRIKSVLSILLNSPDDELIKI  154 (214)
T ss_pred             HHHHHHHHHhcCC---------------EEEEEcCCCcc-----------ccch-HHHHHHHhCCceEeeCCCCHHHHHH
Confidence            222222 223322               23455544332           1246 88999997  567888877665432


Q ss_pred             HHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHH
Q psy17703        503 RLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQ  582 (720)
Q Consensus       503 ~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~  582 (720)
                      .+.         +.   ++. -.-.+++++.+.|....             +-+.|.++.++....+.|.... ..+|..
T Consensus       155 ~l~---------k~---~~~-~~l~l~~ev~~~L~~~~-------------~~d~r~l~~~l~~l~~~~~~~~-~~it~~  207 (214)
T PRK06620        155 LIF---------KH---FSI-SSVTISRQIIDFLLVNL-------------PREYSKIIEILENINYFALISK-RKITIS  207 (214)
T ss_pred             HHH---------HH---HHH-cCCCCCHHHHHHHHHHc-------------cCCHHHHHHHHHHHHHHHHHcC-CCCCHH
Confidence            222         11   111 24568999999988543             2235888887776555555554 358887


Q ss_pred             hHHHHH
Q psy17703        583 DVDEAW  588 (720)
Q Consensus       583 Dv~~Ai  588 (720)
                      .+++++
T Consensus       208 ~~~~~l  213 (214)
T PRK06620        208 LVKEVL  213 (214)
T ss_pred             HHHHHh
Confidence            777764

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.72  E-value=2e-07  Score=107.44  Aligned_cols=124  Identities=15%  Similarity=0.110  Sum_probs=77.7

Q ss_pred             cCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEE-EecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703        408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSI-LAAANPCDSQWNTSKTIIDNIRLPHTLLSRF  486 (720)
Q Consensus       408 ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~i-iaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF  486 (720)
                      ++..|++|||++.|+.+.+++|+..||+-             |..+.+ ++++++.              .+++++.||+
T Consensus       117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEp-------------p~~~~fIL~tte~~--------------kll~TI~SRc  169 (584)
T PRK14952        117 SRYRIFIVDEAHMVTTAGFNALLKIVEEP-------------PEHLIFIFATTEPE--------------KVLPTIRSRT  169 (584)
T ss_pred             CCceEEEEECCCcCCHHHHHHHHHHHhcC-------------CCCeEEEEEeCChH--------------hhHHHHHHhc
Confidence            45679999999999999999999999862             223344 4444431              5889999997


Q ss_pred             eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703        487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL  566 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl  566 (720)
                       ..|.+...+.++..             +++...-+.....+++++...+....             ..++|...+++.-
T Consensus       170 -~~~~F~~l~~~~i~-------------~~L~~i~~~egi~i~~~al~~Ia~~s-------------~GdlR~aln~Ldq  222 (584)
T PRK14952        170 -HHYPFRLLPPRTMR-------------ALIARICEQEGVVVDDAVYPLVIRAG-------------GGSPRDTLSVLDQ  222 (584)
T ss_pred             -eEEEeeCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHH
Confidence             47888777655433             33333222234457777777765321             1234666555543


Q ss_pred             HHHHHHHcCCCCCCHHhHHHHH
Q psy17703        567 SEAHAKMRYSETVEVQDVDEAW  588 (720)
Q Consensus       567 a~A~A~l~~~~~V~~~Dv~~Ai  588 (720)
                      .-+   ..+...|+.+++...+
T Consensus       223 l~~---~~~~~~It~~~v~~ll  241 (584)
T PRK14952        223 LLA---GAADTHVTYQRALGLL  241 (584)
T ss_pred             HHh---ccCCCCcCHHHHHHHH
Confidence            222   2234677877777654

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=98.71  E-value=1.5e-07  Score=107.64  Aligned_cols=185  Identities=13%  Similarity=0.204  Sum_probs=101.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCcccc----CCc-----------cccccccceeecC-ccccceeeecc-eeeecC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTS----GKG-----------SSAVGLTAYITKD-PETRQMVLQTG-ALVLAD  409 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~----g~~-----------ss~~glta~~~~~-~~~~~~~~~~G-~l~lad  409 (720)
                      .+||+||||+|||++|+.+++.+.......    |.-           .....+.++.... ...+...-... .-..++
T Consensus        40 A~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~  119 (605)
T PRK05896         40 AYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFK  119 (605)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCC
Confidence            489999999999999999999763211111    100           0000111100000 00000000000 012345


Q ss_pred             CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      .+|++|||++.|+...+++|+..||+-             |..+.+|.+++..             ..++++++||+. +
T Consensus       120 ~KVIIIDEad~Lt~~A~NaLLKtLEEP-------------p~~tvfIL~Tt~~-------------~KLl~TI~SRcq-~  172 (605)
T PRK05896        120 YKVYIIDEAHMLSTSAWNALLKTLEEP-------------PKHVVFIFATTEF-------------QKIPLTIISRCQ-R  172 (605)
T ss_pred             cEEEEEechHhCCHHHHHHHHHHHHhC-------------CCcEEEEEECCCh-------------HhhhHHHHhhhh-h
Confidence            789999999999999999999999863             2233444444311             148899999996 6


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA  569 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A  569 (720)
                      +.+..++.++...             ++...-..-...+++++.+.+++..             ..++|.+..++.-.  
T Consensus       173 ieF~~Ls~~eL~~-------------~L~~il~kegi~Is~eal~~La~lS-------------~GdlR~AlnlLekL--  224 (605)
T PRK05896        173 YNFKKLNNSELQE-------------LLKSIAKKEKIKIEDNAIDKIADLA-------------DGSLRDGLSILDQL--  224 (605)
T ss_pred             cccCCCCHHHHHH-------------HHHHHHHHcCCCCCHHHHHHHHHHc-------------CCcHHHHHHHHHHH--
Confidence            7777776654432             2222222224467888877766431             12345555544432  


Q ss_pred             HHHHcCCCCCCHHhHHHHH
Q psy17703        570 HAKMRYSETVEVQDVDEAW  588 (720)
Q Consensus       570 ~A~l~~~~~V~~~Dv~~Ai  588 (720)
                       +...+ ..++.+++.+++
T Consensus       225 -~~y~~-~~It~e~V~ell  241 (605)
T PRK05896        225 -STFKN-SEIDIEDINKTF  241 (605)
T ss_pred             -HhhcC-CCCCHHHHHHHh
Confidence             22233 238888887753

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=8.8e-09  Score=110.23  Aligned_cols=87  Identities=29%  Similarity=0.453  Sum_probs=61.5

Q ss_pred             heeecccCCceeeeeeccCcccCCccCCCCCCCCcceeeccCC-------------------ccchhhhhhhhcCC----
Q psy17703        287 AFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNRS-------------------HFTDKQLVRLQETP----  343 (720)
Q Consensus       287 ~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~~~~~~~~s-------------------~~~d~Q~iklQE~p----  343 (720)
                      ..|.|.+||+....|+++        ||+|+.|++|.-.....                   +....-.+..+|.|    
T Consensus         6 t~f~C~~CG~~s~KW~Gk--------Cp~Cg~Wns~vE~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~Ri~t   77 (456)
T COG1066           6 TAFVCQECGYVSPKWLGK--------CPACGAWNTLVEEVLAASPGGAPNKRRSGKAGSEPSKVLKLSDIELEEEPRIST   77 (456)
T ss_pred             cEEEcccCCCCCcccccc--------CCCCCCccceEEeeccccccccccccccccccCCcccceeeccceeeecccccC
Confidence            789999999999999976        99999999987544111                   11122233344444    


Q ss_pred             ----------C----CccEEEEcCCCCHHHHHHHHHHh-hC--CCCccccCCccc
Q psy17703        344 ----------A----EINILLCGDPGTSKSQLLSYVYD-LV--PRSQYTSGKGSS  381 (720)
Q Consensus       344 ----------g----~i~vLL~G~PGtGKS~ll~~va~-~~--pr~~~~~g~~ss  381 (720)
                                |    ..-+|+-|+||.|||+|+-.++. ++  .+..|.+|.+|-
T Consensus        78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~  132 (456)
T COG1066          78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESL  132 (456)
T ss_pred             ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCH
Confidence                      2    24799999999999998766655 33  246788887663

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=98.68  E-value=2.6e-07  Score=99.49  Aligned_cols=181  Identities=16%  Similarity=0.222  Sum_probs=104.2

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCcc-----ccceeeecceeeecCCceeecccccc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPE-----TRQMVLQTGALVLADSGVCCIDEFDK  420 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~-----~~~~~~~~G~l~lad~gI~~IDEidk  420 (720)
                      .|++|+|+||+|||++++++++.+....+.    .....+.+.......     ..++. +...+..++..+++|||++.
T Consensus        39 ~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~----~~~i~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~vviiDe~~~  113 (319)
T PRK00440         39 PHLLFAGPPGTGKTTAALALARELYGEDWR----ENFLELNASDERGIDVIRNKIKEFA-RTAPVGGAPFKIIFLDEADN  113 (319)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHcCCccc----cceEEeccccccchHHHHHHHHHHH-hcCCCCCCCceEEEEeCccc
Confidence            479999999999999999999876321110    000011000000000     00000 00111113456999999999


Q ss_pred             CChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHH
Q psy17703        421 MSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQF  500 (720)
Q Consensus       421 m~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~  500 (720)
                      ++.+.+..|+..|+...             ..+.+|.++|...             .+.+++.+|+. .+.+..++.++.
T Consensus       114 l~~~~~~~L~~~le~~~-------------~~~~lIl~~~~~~-------------~l~~~l~sr~~-~~~~~~l~~~ei  166 (319)
T PRK00440        114 LTSDAQQALRRTMEMYS-------------QNTRFILSCNYSS-------------KIIDPIQSRCA-VFRFSPLKKEAV  166 (319)
T ss_pred             CCHHHHHHHHHHHhcCC-------------CCCeEEEEeCCcc-------------ccchhHHHHhh-eeeeCCCCHHHH
Confidence            99988899999887421             2344555565321             36678999997 467766665443


Q ss_pred             HHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCC
Q psy17703        501 DARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVE  580 (720)
Q Consensus       501 d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~  580 (720)
                      .             +++...-......+++++.+.++...             ..++|.+...++.+.+.     ...||
T Consensus       167 ~-------------~~l~~~~~~~~~~i~~~al~~l~~~~-------------~gd~r~~~~~l~~~~~~-----~~~it  215 (319)
T PRK00440        167 A-------------ERLRYIAENEGIEITDDALEAIYYVS-------------EGDMRKAINALQAAAAT-----GKEVT  215 (319)
T ss_pred             H-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHc-----CCCCC
Confidence            2             23322222235568889888886431             12357766666533221     36799


Q ss_pred             HHhHHHHHH
Q psy17703        581 VQDVDEAWR  589 (720)
Q Consensus       581 ~~Dv~~Ai~  589 (720)
                      .+++..++.
T Consensus       216 ~~~v~~~~~  224 (319)
T PRK00440        216 EEAVYKITG  224 (319)
T ss_pred             HHHHHHHhC
Confidence            999988753

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=98.68  E-value=1.6e-06  Score=105.43  Aligned_cols=49  Identities=22%  Similarity=0.341  Sum_probs=39.5

Q ss_pred             CcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCC
Q psy17703        663 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP  713 (720)
Q Consensus       663 ~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p  713 (720)
                      .+..+||++++.......++++|+++.+.-++ |....+ .+|.||+++|=
T Consensus       669 ~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~-g~~vd~-rn~iiI~TSn~  717 (852)
T TIGR03346       669 SVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQ-GRTVDF-RNTVIIMTSNL  717 (852)
T ss_pred             cEEEEeccccCCHHHHHHHHHHHhcCceecCC-CeEEec-CCcEEEEeCCc
Confidence            46789999999999999999999999988554 444443 36889999884

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=98.68  E-value=9.5e-08  Score=104.33  Aligned_cols=121  Identities=23%  Similarity=0.343  Sum_probs=87.3

Q ss_pred             CCceeeccccccCChH------------HHHHHHHHHHhceEeeeccCeEEeec-CceEEEecccCCCCCCCCCcccccc
Q psy17703        409 DSGVCCIDEFDKMSDT------------TRSILHEVMEQQTLSIAKAGIICQLN-ARTSILAAANPCDSQWNTSKTIIDN  475 (720)
Q Consensus       409 d~gI~~IDEidkm~~~------------~~~~L~e~mE~~~vsi~k~g~~~~l~-a~~~iiaaaNp~~g~~~~~~~~~~~  475 (720)
                      ..||+|||||||+...            .|.+|+..||.-++++ |.|   ..+ .+..+||+.-     |...+    .
T Consensus       249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~-k~~---~i~T~~ILFI~~GA-----F~~~k----p  315 (443)
T PRK05201        249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVST-KYG---MVKTDHILFIASGA-----FHVSK----P  315 (443)
T ss_pred             cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeee-cce---eEECCceeEEecCC-----cCCCC----h
Confidence            7899999999998632            5889999999888876 333   223 3466666543     22222    1


Q ss_pred             cCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHH-hhcCCcchHHHHHHHHHHHHHh
Q psy17703        476 IRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQ-EHLSPTLSEEASQRLIQTYVDM  543 (720)
Q Consensus       476 ~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar-~~~~p~ls~ea~~~l~~~y~~l  543 (720)
                      -+|-|.|.-||.+++.+.+...++..+.|..- ...+++.|.+.-+ ..+.-.++++|.+.|++...+.
T Consensus       316 ~DlIPEl~GR~Pi~v~L~~L~~~dL~~ILteP-~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~  383 (443)
T PRK05201        316 SDLIPELQGRFPIRVELDALTEEDFVRILTEP-KASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQV  383 (443)
T ss_pred             hhccHHHhCccceEEECCCCCHHHHHHHhcCC-hhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHh
Confidence            35779999999999999999888777666531 2447888887443 4577789999999998877654

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.68  E-value=1.3e-07  Score=113.98  Aligned_cols=174  Identities=12%  Similarity=0.130  Sum_probs=92.3

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCcccccccccee-e-cCccccceeeeccee----ee-cCCceeec
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGSSAVGLTAYI-T-KDPETRQMVLQTGAL----VL-ADSGVCCI  415 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~ss~~glta~~-~-~~~~~~~~~~~~G~l----~l-ad~gI~~I  415 (720)
                      ..-|++|+||||+|||++++.+++.+...... ...+.....+..+. . .....|+|.-+-..+    .. ..+.|+||
T Consensus       207 ~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfI  286 (852)
T TIGR03345       207 RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFI  286 (852)
T ss_pred             CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            45699999999999999999999976432110 00111111000000 0 001112221100000    00 13569999


Q ss_pred             cccccCCh-----HHH---HHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703        416 DEFDKMSD-----TTR---SILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD  487 (720)
Q Consensus       416 DEidkm~~-----~~~---~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd  487 (720)
                      ||++.+..     ..+   +.|..+|+.+               ...+|||+++...+        ..+.++++|.+||.
T Consensus       287 DEih~l~~~g~~~~~~d~~n~Lkp~l~~G---------------~l~~IgaTT~~e~~--------~~~~~d~AL~rRf~  343 (852)
T TIGR03345       287 DEAHTLIGAGGQAGQGDAANLLKPALARG---------------ELRTIAATTWAEYK--------KYFEKDPALTRRFQ  343 (852)
T ss_pred             eChHHhccCCCccccccHHHHhhHHhhCC---------------CeEEEEecCHHHHh--------hhhhccHHHHHhCe
Confidence            99999853     122   2466666544               35678999865311        12457899999997


Q ss_pred             eEEEecCCChHHHHHHHHhh-----------cchhHHHHHHHHHHhhcCC-cchHHHHHHHHHHHH
Q psy17703        488 LIFLLLDPQSEQFDARLARH-----------LDITVLRDYIAYAQEHLSP-TLSEEASQRLIQTYV  541 (720)
Q Consensus       488 li~~l~d~~~~~~d~~la~~-----------i~~~~l~~~i~~ar~~~~p-~ls~ea~~~l~~~y~  541 (720)
                       ++.+..|+.++....+...           ++.+.+...+..+..++.- .+++.|++.|-+.-.
T Consensus       344 -~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a  408 (852)
T TIGR03345       344 -VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACA  408 (852)
T ss_pred             -EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHH
Confidence             6788888777665553211           1333444444444444332 345555555544433

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=98.67  E-value=8.4e-07  Score=97.55  Aligned_cols=143  Identities=15%  Similarity=0.139  Sum_probs=86.9

Q ss_pred             ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEee-cCceEEEecccCCCCCCCCCcccccccCCChhhhccce-e
Q psy17703        411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQL-NARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD-L  488 (720)
Q Consensus       411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l-~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd-l  488 (720)
                      .+++|||+|.+....+..|.+.+.-..        .... +.++.+|+++|...-        .  -.+.+.+.+||. .
T Consensus       131 ~vlvIDE~d~L~~~~~~~L~~l~~~~~--------~~~~~~~~v~lI~i~n~~~~--------~--~~l~~~~~s~~~~~  192 (365)
T TIGR02928       131 LIIVLDEIDYLVGDDDDLLYQLSRARS--------NGDLDNAKVGVIGISNDLKF--------R--ENLDPRVKSSLCEE  192 (365)
T ss_pred             EEEEECchhhhccCCcHHHHhHhcccc--------ccCCCCCeEEEEEEECCcch--------H--hhcCHHHhccCCcc
Confidence            478999999995433444554442110        1111 246788888885421        1  146788889996 4


Q ss_pred             EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE  568 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~  568 (720)
                      .+.+.+...++....+..+         +..+-  -...+++++.+.+.....  +.        ...+|....+++.|.
T Consensus       193 ~i~f~p~~~~e~~~il~~r---------~~~~~--~~~~~~~~~l~~i~~~~~--~~--------~Gd~R~al~~l~~a~  251 (365)
T TIGR02928       193 EIIFPPYDAEELRDILENR---------AEKAF--YDGVLDDGVIPLCAALAA--QE--------HGDARKAIDLLRVAG  251 (365)
T ss_pred             eeeeCCCCHHHHHHHHHHH---------HHhhc--cCCCCChhHHHHHHHHHH--Hh--------cCCHHHHHHHHHHHH
Confidence            4566666555544443322         21111  123467777666654321  11        124588888888888


Q ss_pred             HHHHHcCCCCCCHHhHHHHHHHHH
Q psy17703        569 AHAKMRYSETVEVQDVDEAWRLHR  592 (720)
Q Consensus       569 A~A~l~~~~~V~~~Dv~~Ai~l~~  592 (720)
                      -.|..+.+..|+.+|+..|+....
T Consensus       252 ~~a~~~~~~~it~~~v~~a~~~~~  275 (365)
T TIGR02928       252 EIAEREGAERVTEDHVEKAQEKIE  275 (365)
T ss_pred             HHHHHcCCCCCCHHHHHHHHHHHH
Confidence            888888888999999999988654

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=98.65  E-value=3.3e-08  Score=100.84  Aligned_cols=239  Identities=20%  Similarity=0.200  Sum_probs=146.7

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhC-------CCCccc---cCCccccccccceeecCccccceeeecceeeecCCcee
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLV-------PRSQYT---SGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVC  413 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~-------pr~~~~---~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~  413 (720)
                      ...++||.||+|.|||.|++.+.++-       .+.+-+   +..+.++..-..+.++...+|...-+.|.+-.||||.+
T Consensus       207 sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggml  286 (531)
T COG4650         207 SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGML  286 (531)
T ss_pred             ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceE
Confidence            56799999999999999999998743       221111   11122222112234455677777788999999999999


Q ss_pred             eccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEec
Q psy17703        414 CIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLL  493 (720)
Q Consensus       414 ~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~  493 (720)
                      |+||+..+..+.|..|+.++|+..+.-  -|......++|.+||-+.....+|-      ..-.+...|.-|..+ +.+.
T Consensus       287 fldeigelgadeqamllkaieekrf~p--fgsdr~v~sdfqliagtvrdlrq~v------aeg~fredl~arinl-wtf~  357 (531)
T COG4650         287 FLDEIGELGADEQAMLLKAIEEKRFYP--FGSDRQVSSDFQLIAGTVRDLRQLV------AEGKFREDLYARINL-WTFT  357 (531)
T ss_pred             ehHhhhhcCccHHHHHHHHHHhhccCC--CCCccccccchHHhhhhHHHHHHHH------hccchHHHHHHhhhe-eeee
Confidence            999999999999999999999887653  5666677788999887754321111      111355667777763 3333


Q ss_pred             CCChHHHHHHHHhhcchhHHHHHHHHHHhh-cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703        494 DPQSEQFDARLARHLDITVLRDYIAYAQEH-LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK  572 (720)
Q Consensus       494 d~~~~~~d~~la~~i~~~~l~~~i~~ar~~-~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~  572 (720)
                      -|.-....+.|...++.++.+    .|+.. -..++.-|+......+.      .+....+..+-|.|.+-+.-   .|-
T Consensus       358 lpgl~qr~ediepnldyeler----ha~~~g~~vrfntearra~l~fa------~spqa~w~gnfrelsasvtr---mat  424 (531)
T COG4650         358 LPGLRQRQEDIEPNLDYELER----HASLTGDSVRFNTEARRAWLAFA------TSPQATWRGNFRELSASVTR---MAT  424 (531)
T ss_pred             ccccccCccccCCCccHHHHH----HHHhhCceeeeehHHHHHHHHhc------cCcchhhcccHHHHhHHHHH---HHH
Confidence            333233333344444444433    23322 12345556654443332      22233455666877654322   233


Q ss_pred             HcCCCCCCHHhHHHHHHHHHHHHHHhccCCCC
Q psy17703        573 MRYSETVEVQDVDEAWRLHREALKQSATDPLS  604 (720)
Q Consensus       573 l~~~~~V~~~Dv~~Ai~l~~~~l~~~~~d~~~  604 (720)
                      +..+..++.+-+++-|.-++++..+....+.+
T Consensus       425 lad~grit~~~ve~ei~rlr~~w~~~~p~~l~  456 (531)
T COG4650         425 LADSGRITLDVVEDEINRLRYNWQESRPSALT  456 (531)
T ss_pred             HhcCCceeHHHHHHHHHHHHHHhhhcCchhhh
Confidence            45567889988988888777877765544433

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=98.65  E-value=4.7e-07  Score=99.10  Aligned_cols=186  Identities=17%  Similarity=0.197  Sum_probs=102.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCcc----ccC-----------CccccccccceeecCc-cccceeeeccee-eecC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQY----TSG-----------KGSSAVGLTAYITKDP-ETRQMVLQTGAL-VLAD  409 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~----~~g-----------~~ss~~glta~~~~~~-~~~~~~~~~G~l-~lad  409 (720)
                      .+||+||||+|||++++.+++.+.....    .+|           .......+.+...... ...+..-..... ..++
T Consensus        38 ~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~  117 (355)
T TIGR02397        38 AYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGK  117 (355)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCC
Confidence            4799999999999999999987643210    000           0000000100000000 000000001111 2345


Q ss_pred             CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      ..+++|||++.|+...++.|+..+|+.             |..+.+|.++|...             .+.+++.+|+. .
T Consensus       118 ~~vviidea~~l~~~~~~~Ll~~le~~-------------~~~~~lIl~~~~~~-------------~l~~~l~sr~~-~  170 (355)
T TIGR02397       118 YKVYIIDEVHMLSKSAFNALLKTLEEP-------------PEHVVFILATTEPH-------------KIPATILSRCQ-R  170 (355)
T ss_pred             ceEEEEeChhhcCHHHHHHHHHHHhCC-------------ccceeEEEEeCCHH-------------HHHHHHHhhee-E
Confidence            679999999999999899999998752             23455555554221             47789999995 6


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA  569 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A  569 (720)
                      +.+.+++.++....+.         .   ++++ ..-.+++++.+.+.+..             ..++|.+...+.-...
T Consensus       171 ~~~~~~~~~~l~~~l~---------~---~~~~-~g~~i~~~a~~~l~~~~-------------~g~~~~a~~~lekl~~  224 (355)
T TIGR02397       171 FDFKRIPLEDIVERLK---------K---ILDK-EGIKIEDEALELIARAA-------------DGSLRDALSLLDQLIS  224 (355)
T ss_pred             EEcCCCCHHHHHHHHH---------H---HHHH-cCCCCCHHHHHHHHHHc-------------CCChHHHHHHHHHHHh
Confidence            6776665544322222         1   1222 24467888888777432             1134555554432222


Q ss_pred             HHHHcCCCCCCHHhHHHHHH
Q psy17703        570 HAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       570 ~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      .   . ...++.+|+.+++.
T Consensus       225 ~---~-~~~it~~~v~~~~~  240 (355)
T TIGR02397       225 F---G-NGNITYEDVNELLG  240 (355)
T ss_pred             h---c-CCCCCHHHHHHHhC
Confidence            2   1 24589999988754

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK06893 DNA replication initiation factor; Validated

Probab=98.63  E-value=3.2e-07  Score=94.32  Aligned_cols=181  Identities=20%  Similarity=0.210  Sum_probs=102.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC----CCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP----RSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p----r~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      -.++|+||||||||.|++++++.+-    +..|.+......           .... .++    .+.+..+++|||++.+
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~-----------~~~~-~~~----~~~~~dlLilDDi~~~  103 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY-----------FSPA-VLE----NLEQQDLVCLDDLQAV  103 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh-----------hhHH-HHh----hcccCCEEEEeChhhh
Confidence            3579999999999999999998642    222222110000           0000 000    1224569999999987


Q ss_pred             Ch--HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCCCh
Q psy17703        422 SD--TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDPQS  497 (720)
Q Consensus       422 ~~--~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~~~  497 (720)
                      ..  ..+..|+..++...-    .       ....++.|+|..+..|..         ..+.|.||+-  +++.+..|.+
T Consensus       104 ~~~~~~~~~l~~l~n~~~~----~-------~~~illits~~~p~~l~~---------~~~~L~sRl~~g~~~~l~~pd~  163 (229)
T PRK06893        104 IGNEEWELAIFDLFNRIKE----Q-------GKTLLLISADCSPHALSI---------KLPDLASRLTWGEIYQLNDLTD  163 (229)
T ss_pred             cCChHHHHHHHHHHHHHHH----c-------CCcEEEEeCCCChHHccc---------cchhHHHHHhcCCeeeCCCCCH
Confidence            53  334467666653210    1       112344455533333221         3378999874  6788888876


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCC
Q psy17703        498 EQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSE  577 (720)
Q Consensus       498 ~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~  577 (720)
                      +...+.+.++            +.. -.-.+++++.++|...+             +-+.|.++.++..-.. +.+....
T Consensus       164 e~~~~iL~~~------------a~~-~~l~l~~~v~~~L~~~~-------------~~d~r~l~~~l~~l~~-~~~~~~~  216 (229)
T PRK06893        164 EQKIIVLQRN------------AYQ-RGIELSDEVANFLLKRL-------------DRDMHTLFDALDLLDK-ASLQAQR  216 (229)
T ss_pred             HHHHHHHHHH------------HHH-cCCCCCHHHHHHHHHhc-------------cCCHHHHHHHHHHHHH-HHHhcCC
Confidence            6554333321            111 24678999998887543             2245777776653332 3333233


Q ss_pred             CCCHHhHHHHHH
Q psy17703        578 TVEVQDVDEAWR  589 (720)
Q Consensus       578 ~V~~~Dv~~Ai~  589 (720)
                      .+|...+++++.
T Consensus       217 ~it~~~v~~~L~  228 (229)
T PRK06893        217 KLTIPFVKEILG  228 (229)
T ss_pred             CCCHHHHHHHhc
Confidence            689888887753

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.62  E-value=5.3e-07  Score=104.67  Aligned_cols=184  Identities=17%  Similarity=0.176  Sum_probs=101.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCccc---------------cCCccccccccceee-cCccccceeeecc-eeeecC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQYT---------------SGKGSSAVGLTAYIT-KDPETRQMVLQTG-ALVLAD  409 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~---------------~g~~ss~~glta~~~-~~~~~~~~~~~~G-~l~lad  409 (720)
                      ..||+||||+|||++++.+++.+......               .|.........+.-. .-...++..-... .-..++
T Consensus        40 ayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~  119 (576)
T PRK14965         40 AFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSR  119 (576)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCC
Confidence            35899999999999999999976421100               011111100100000 0000000000000 002345


Q ss_pred             CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      ..|++|||++.|+...+++|+..||+-             |..+.+|.++|...             +|+++++||+- +
T Consensus       120 ~KVvIIdev~~Lt~~a~naLLk~LEep-------------p~~~~fIl~t~~~~-------------kl~~tI~SRc~-~  172 (576)
T PRK14965        120 YKIFIIDEVHMLSTNAFNALLKTLEEP-------------PPHVKFIFATTEPH-------------KVPITILSRCQ-R  172 (576)
T ss_pred             ceEEEEEChhhCCHHHHHHHHHHHHcC-------------CCCeEEEEEeCChh-------------hhhHHHHHhhh-h
Confidence            679999999999999999999999963             33444454444211             58999999995 7


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA  569 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A  569 (720)
                      |.+..++.++..             .++...-+.-.-.+++++.+.+....             ..+.|.+.+++.  +.
T Consensus       173 ~~f~~l~~~~i~-------------~~L~~i~~~egi~i~~~al~~la~~a-------------~G~lr~al~~Ld--ql  224 (576)
T PRK14965        173 FDFRRIPLQKIV-------------DRLRYIADQEGISISDAALALVARKG-------------DGSMRDSLSTLD--QV  224 (576)
T ss_pred             hhcCCCCHHHHH-------------HHHHHHHHHhCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHH--HH
Confidence            777766655432             22222212224457788877776432             123365555543  22


Q ss_pred             HHHHcCCCCCCHHhHHHH
Q psy17703        570 HAKMRYSETVEVQDVDEA  587 (720)
Q Consensus       570 ~A~l~~~~~V~~~Dv~~A  587 (720)
                      .+...  +.|+.+|+...
T Consensus       225 iay~g--~~It~edV~~l  240 (576)
T PRK14965        225 LAFCG--DAVGDDDVAEL  240 (576)
T ss_pred             HHhcc--CCCCHHHHHHH
Confidence            22222  45888887765

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=98.62  E-value=8.1e-07  Score=106.22  Aligned_cols=186  Identities=15%  Similarity=0.090  Sum_probs=98.6

Q ss_pred             c-EEEEcCCCCHHHHHHHHHHhhCCCCcc----ccCC------------c-cccccccceeecC-ccccceeeec-ceee
Q psy17703        347 N-ILLCGDPGTSKSQLLSYVYDLVPRSQY----TSGK------------G-SSAVGLTAYITKD-PETRQMVLQT-GALV  406 (720)
Q Consensus       347 ~-vLL~G~PGtGKS~ll~~va~~~pr~~~----~~g~------------~-ss~~glta~~~~~-~~~~~~~~~~-G~l~  406 (720)
                      | +||+|++|+|||++++.+++.+....-    .+|.            + .....+.++.... ...++..-+. -.-.
T Consensus        38 Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~  117 (824)
T PRK07764         38 HAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPA  117 (824)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchh
Confidence            5 799999999999999999997742110    0110            0 0000000000000 0000000000 0012


Q ss_pred             ecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703        407 LADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF  486 (720)
Q Consensus       407 lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF  486 (720)
                      .....|++|||+++|+...+++|+..||+-             +..+.+|.++|-..             +|.++|.||+
T Consensus       118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEp-------------P~~~~fIl~tt~~~-------------kLl~TIrSRc  171 (824)
T PRK07764        118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEP-------------PEHLKFIFATTEPD-------------KVIGTIRSRT  171 (824)
T ss_pred             cCCceEEEEechhhcCHHHHHHHHHHHhCC-------------CCCeEEEEEeCChh-------------hhhHHHHhhe
Confidence            234679999999999999999999999863             22344444444221             3778999999


Q ss_pred             eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703        487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL  566 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl  566 (720)
                      - +|.|.....++..             +++...-..-...+++++...|+...-             .+.|.+.+++.-
T Consensus       172 ~-~v~F~~l~~~~l~-------------~~L~~il~~EGv~id~eal~lLa~~sg-------------GdlR~Al~eLEK  224 (824)
T PRK07764        172 H-HYPFRLVPPEVMR-------------GYLERICAQEGVPVEPGVLPLVIRAGG-------------GSVRDSLSVLDQ  224 (824)
T ss_pred             e-EEEeeCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHcC-------------CCHHHHHHHHHH
Confidence            5 6677666554433             223222111234567777666654321             123544444332


Q ss_pred             HHHHHHHcCCCCCCHHhHHHHH
Q psy17703        567 SEAHAKMRYSETVEVQDVDEAW  588 (720)
Q Consensus       567 a~A~A~l~~~~~V~~~Dv~~Ai  588 (720)
                      .-+   ....+.|+.+++...+
T Consensus       225 Lia---~~~~~~IT~e~V~all  243 (824)
T PRK07764        225 LLA---GAGPEGVTYERAVALL  243 (824)
T ss_pred             HHh---hcCCCCCCHHHHHHHh
Confidence            111   2234567877777653

>KOG0739|consensus

Probab=98.61  E-value=2.7e-08  Score=101.80  Aligned_cols=128  Identities=27%  Similarity=0.293  Sum_probs=76.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeeccee-----eec---CCceeecc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGAL-----VLA---DSGVCCID  416 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l-----~la---d~gI~~ID  416 (720)
                      ..-|||+||||||||.|++++|..+. +.+.+-..+..+            ..|.-+...|     .+|   ...|+|||
T Consensus       166 wrgiLLyGPPGTGKSYLAKAVATEAn-STFFSvSSSDLv------------SKWmGESEkLVknLFemARe~kPSIIFiD  232 (439)
T KOG0739|consen  166 WRGILLYGPPGTGKSYLAKAVATEAN-STFFSVSSSDLV------------SKWMGESEKLVKNLFEMARENKPSIIFID  232 (439)
T ss_pred             ceeEEEeCCCCCcHHHHHHHHHhhcC-CceEEeehHHHH------------HHHhccHHHHHHHHHHHHHhcCCcEEEee
Confidence            35799999999999999999998776 444333222221            1122121111     122   24799999


Q ss_pred             ccccCCh--------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703        417 EFDKMSD--------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL  488 (720)
Q Consensus       417 Eidkm~~--------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl  488 (720)
                      |+|.+-.        ..|-.--|.+-|    .  .| ...-+..+.|++|+|-++             .|..++.+||+-
T Consensus       233 EiDslcg~r~enEseasRRIKTEfLVQ----M--qG-VG~d~~gvLVLgATNiPw-------------~LDsAIRRRFek  292 (439)
T KOG0739|consen  233 EIDSLCGSRSENESEASRRIKTEFLVQ----M--QG-VGNDNDGVLVLGATNIPW-------------VLDSAIRRRFEK  292 (439)
T ss_pred             hhhhhccCCCCCchHHHHHHHHHHHHh----h--hc-cccCCCceEEEecCCCch-------------hHHHHHHHHhhc
Confidence            9998732        112111222211    1  11 112245688999999776             688999999998


Q ss_pred             EEEecCCChHHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARLA  505 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la  505 (720)
                      .+-++-|....+..+..
T Consensus       293 RIYIPLPe~~AR~~MF~  309 (439)
T KOG0739|consen  293 RIYIPLPEAHARARMFK  309 (439)
T ss_pred             ceeccCCcHHHhhhhhe
Confidence            77777665444433333

>PRK08727 hypothetical protein; Validated

Probab=98.60  E-value=4.9e-07  Score=93.24  Aligned_cols=182  Identities=18%  Similarity=0.160  Sum_probs=105.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeeccee-eecCCceeeccccccCC--h
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGAL-VLADSGVCCIDEFDKMS--D  423 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l-~lad~gI~~IDEidkm~--~  423 (720)
                      .++|+|++|||||.|+++++..+.+.    +.  ....++..-    ......   ..+ .+..-.+++|||++.+.  +
T Consensus        43 ~l~l~G~~G~GKThL~~a~~~~~~~~----~~--~~~y~~~~~----~~~~~~---~~~~~l~~~dlLiIDDi~~l~~~~  109 (233)
T PRK08727         43 WLYLSGPAGTGKTHLALALCAAAEQA----GR--SSAYLPLQA----AAGRLR---DALEALEGRSLVALDGLESIAGQR  109 (233)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHc----CC--cEEEEeHHH----hhhhHH---HHHHHHhcCCEEEEeCcccccCCh
Confidence            59999999999999999997755321    10  111111100    000000   000 11234589999999886  3


Q ss_pred             HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc--eeEEEecCCChHHHH
Q psy17703        424 TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF--DLIFLLLDPQSEQFD  501 (720)
Q Consensus       424 ~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF--dli~~l~d~~~~~~d  501 (720)
                      ..+..+...++...            ..+..+|.|+|-.+..|..         +.+.|.|||  .+++.+..+.+++..
T Consensus       110 ~~~~~lf~l~n~~~------------~~~~~vI~ts~~~p~~l~~---------~~~dL~SRl~~~~~~~l~~~~~e~~~  168 (233)
T PRK08727        110 EDEVALFDFHNRAR------------AAGITLLYTARQMPDGLAL---------VLPDLRSRLAQCIRIGLPVLDDVARA  168 (233)
T ss_pred             HHHHHHHHHHHHHH------------HcCCeEEEECCCChhhhhh---------hhHHHHHHHhcCceEEecCCCHHHHH
Confidence            44566777765431            1123477777755544432         568999997  477888888776554


Q ss_pred             HHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCH
Q psy17703        502 ARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEV  581 (720)
Q Consensus       502 ~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~  581 (720)
                      ..+.+            .|... .-.+++++.+.|.+..-             .+.|.+..++....+.+....+ .+|.
T Consensus       169 ~iL~~------------~a~~~-~l~l~~e~~~~La~~~~-------------rd~r~~l~~L~~l~~~~~~~~~-~it~  221 (233)
T PRK08727        169 AVLRE------------RAQRR-GLALDEAAIDWLLTHGE-------------RELAGLVALLDRLDRESLAAKR-RVTV  221 (233)
T ss_pred             HHHHH------------HHHHc-CCCCCHHHHHHHHHhCC-------------CCHHHHHHHHHHHHHHHHHhCC-CCCH
Confidence            43332            12221 45689999988875531             2236665555544443444444 6888


Q ss_pred             HhHHHHHH
Q psy17703        582 QDVDEAWR  589 (720)
Q Consensus       582 ~Dv~~Ai~  589 (720)
                      +.+++++.
T Consensus       222 ~~~~~~l~  229 (233)
T PRK08727        222 PFLRRVLE  229 (233)
T ss_pred             HHHHHHHh
Confidence            77777654

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=98.59  E-value=6.2e-08  Score=103.57  Aligned_cols=140  Identities=15%  Similarity=0.212  Sum_probs=76.7

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCC--ccccccccceeecCccccceeeecceee--ecCCceeeccccc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGK--GSSAVGLTAYITKDPETRQMVLQTGALV--LADSGVCCIDEFD  419 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~--~ss~~glta~~~~~~~~~~~~~~~G~l~--lad~gI~~IDEid  419 (720)
                      ..-++|+||||||||.+++++++.+.-..+ .++.  .+..+|.....++..+     -++....  .....|+||||||
T Consensus       148 PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F-----~~A~~~a~~~~aPcVLFIDEID  222 (413)
T PLN00020        148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRY-----REAADIIKKKGKMSCLFINDLD  222 (413)
T ss_pred             CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHH-----HHHHHHhhccCCCeEEEEehhh
Confidence            356899999999999999999998753321 1111  1122222222222111     1111110  1124699999999


Q ss_pred             cCChH---------HH---HHHHHHHHhceEeeeccCeE--EeecCceEEEecccCCCCCCCCCcccccccCCChhhhc-
Q psy17703        420 KMSDT---------TR---SILHEVMEQQTLSIAKAGII--CQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS-  484 (720)
Q Consensus       420 km~~~---------~~---~~L~e~mE~~~vsi~k~g~~--~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls-  484 (720)
                      ..-..         .|   ..|+..|+.-+ .+.-.|..  ..-..++.||+|+|...             .|+++|++ 
T Consensus       223 A~~g~r~~~~~tv~~qiV~~tLLnl~D~p~-~v~l~G~w~~~~~~~~V~VIaTTNrpd-------------~LDpALlRp  288 (413)
T PLN00020        223 AGAGRFGTTQYTVNNQMVNGTLMNIADNPT-NVSLGGDWREKEEIPRVPIIVTGNDFS-------------TLYAPLIRD  288 (413)
T ss_pred             hcCCCCCCCCcchHHHHHHHHHHHHhcCCc-cccccccccccccCCCceEEEeCCCcc-------------cCCHhHcCC
Confidence            76542         11   23444444211 11112221  23356789999999665             59999999 


Q ss_pred             -cceeEEEecCCChHHHHHHHH
Q psy17703        485 -RFDLIFLLLDPQSEQFDARLA  505 (720)
Q Consensus       485 -RFdli~~l~d~~~~~~d~~la  505 (720)
                       |||..+.  -|..+++..++.
T Consensus       289 GRfDk~i~--lPd~e~R~eIL~  308 (413)
T PLN00020        289 GRMEKFYW--APTREDRIGVVH  308 (413)
T ss_pred             CCCCceeC--CCCHHHHHHHHH
Confidence             9997653  344444444444

>KOG0728|consensus

Probab=98.58  E-value=1.1e-07  Score=95.18  Aligned_cols=130  Identities=25%  Similarity=0.322  Sum_probs=83.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCC-ccccCCccc--cccccceeecCccccceeeecceeeec---CCceeeccccc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRS-QYTSGKGSS--AVGLTAYITKDPETRQMVLQTGALVLA---DSGVCCIDEFD  419 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~-~~~~g~~ss--~~glta~~~~~~~~~~~~~~~G~l~la---d~gI~~IDEid  419 (720)
                      -.+||+||||||||.|+++++...... +..+|.+--  .+|..+-.++           ..+++|   ...|+|.||||
T Consensus       182 KGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvr-----------elfvmarehapsiifmdeid  250 (404)
T KOG0728|consen  182 KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVR-----------ELFVMAREHAPSIIFMDEID  250 (404)
T ss_pred             cceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHH-----------HHHHHHHhcCCceEeeeccc
Confidence            479999999999999999999765421 222222110  0111111111           112222   25799999999


Q ss_pred             cCC-----------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cc
Q psy17703        420 KMS-----------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RF  486 (720)
Q Consensus       420 km~-----------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RF  486 (720)
                      .+.           .+.|-.++|.+.|-      +|...+  .+.-+|.|+|...             .|+++|++  |.
T Consensus       251 sigs~r~e~~~ggdsevqrtmlellnql------dgfeat--knikvimatnrid-------------ild~allrpgri  309 (404)
T KOG0728|consen  251 SIGSSRVESGSGGDSEVQRTMLELLNQL------DGFEAT--KNIKVIMATNRID-------------ILDPALLRPGRI  309 (404)
T ss_pred             ccccccccCCCCccHHHHHHHHHHHHhc------cccccc--cceEEEEeccccc-------------cccHhhcCCCcc
Confidence            873           34577888888753      344333  3467889999765             58899988  99


Q ss_pred             eeEEEecCCChHHHHHHHHhh
Q psy17703        487 DLIFLLLDPQSEQFDARLARH  507 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la~~  507 (720)
                      |-.+.+++|..+.+...+.-|
T Consensus       310 drkiefp~p~e~ar~~ilkih  330 (404)
T KOG0728|consen  310 DRKIEFPPPNEEARLDILKIH  330 (404)
T ss_pred             cccccCCCCCHHHHHHHHHHh
Confidence            999999988777665555543

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=98.57  E-value=9.3e-07  Score=101.95  Aligned_cols=182  Identities=14%  Similarity=0.156  Sum_probs=103.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCccc----cC-----------Ccccccccccee-ecCccccce----eeecceee
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQYT----SG-----------KGSSAVGLTAYI-TKDPETRQM----VLQTGALV  406 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~----~g-----------~~ss~~glta~~-~~~~~~~~~----~~~~G~l~  406 (720)
                      .+||+||||+|||++++.+++.+......    +|           .......+.++. ..-....+.    ...|   .
T Consensus        40 ayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p---~  116 (563)
T PRK06647         40 AYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPP---A  116 (563)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhch---h
Confidence            38999999999999999999977432100    00           000000000000 000000000    0111   1


Q ss_pred             ecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703        407 LADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF  486 (720)
Q Consensus       407 lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF  486 (720)
                      .++..+++|||++.|+...+++|+..||+-             |..+.+|.+++...             .++++|.||+
T Consensus       117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEep-------------p~~~vfI~~tte~~-------------kL~~tI~SRc  170 (563)
T PRK06647        117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEP-------------PPYIVFIFATTEVH-------------KLPATIKSRC  170 (563)
T ss_pred             cCCCEEEEEEChhhcCHHHHHHHHHhhccC-------------CCCEEEEEecCChH-------------HhHHHHHHhc
Confidence            345679999999999999999999999852             23444544443211             4889999999


Q ss_pred             eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703        487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL  566 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl  566 (720)
                      . .+.+..++.++...             ++....+.-.-.+++++.+.|+...             ..+.|.+.+++.-
T Consensus       171 ~-~~~f~~l~~~el~~-------------~L~~i~~~egi~id~eAl~lLa~~s-------------~GdlR~alslLdk  223 (563)
T PRK06647        171 Q-HFNFRLLSLEKIYN-------------MLKKVCLEDQIKYEDEALKWIAYKS-------------TGSVRDAYTLFDQ  223 (563)
T ss_pred             e-EEEecCCCHHHHHH-------------HHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHH
Confidence            7 56777665554332             2222222234567888888887432             1234666666543


Q ss_pred             HHHHHHHcCCCCCCHHhHHHHH
Q psy17703        567 SEAHAKMRYSETVEVQDVDEAW  588 (720)
Q Consensus       567 a~A~A~l~~~~~V~~~Dv~~Ai  588 (720)
                      ..+.+    ...++.+++..++
T Consensus       224 lis~~----~~~It~e~V~~ll  241 (563)
T PRK06647        224 VVSFS----DSDITLEQIRSKM  241 (563)
T ss_pred             HHhhc----CCCCCHHHHHHHh
Confidence            22221    2468888888765

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=98.57  E-value=1.4e-07  Score=102.96  Aligned_cols=139  Identities=23%  Similarity=0.372  Sum_probs=94.5

Q ss_pred             cCCceeeccccccCChH------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccc
Q psy17703        408 ADSGVCCIDEFDKMSDT------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDN  475 (720)
Q Consensus       408 ad~gI~~IDEidkm~~~------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~  475 (720)
                      +..||+|||||||+...            .|.+|+..||--++++ |.|..-+  .+..+||+.-     |...+    .
T Consensus       246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~-k~~~v~T--~~ILFI~~GA-----F~~~k----p  313 (441)
T TIGR00390       246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT-KYGMVKT--DHILFIAAGA-----FQLAK----P  313 (441)
T ss_pred             HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee-cceeEEC--CceeEEecCC-----cCCCC----h
Confidence            57899999999998642            5889999999888776 4432222  3456666542     22221    2


Q ss_pred             cCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHH-hhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcc
Q psy17703        476 IRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQ-EHLSPTLSEEASQRLIQTYVDMRKLGAGRGRIS  554 (720)
Q Consensus       476 ~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar-~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~  554 (720)
                      -+|-|.|.-||.+++.+.+...++..+.|..- ...+++.|.+.-+ ..+.-.++++|.+.|++...++.....+   +.
T Consensus       314 ~DlIPEl~GR~Pi~v~L~~L~~edL~rILteP-~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~---iG  389 (441)
T TIGR00390       314 SDLIPELQGRFPIRVELQALTTDDFERILTEP-KNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTEN---IG  389 (441)
T ss_pred             hhccHHHhCccceEEECCCCCHHHHHHHhcCC-hhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccc---cc
Confidence            25789999999999999999888877666532 2357788876655 3466788999999998887664332211   22


Q ss_pred             cCHHHHHHHH
Q psy17703        555 AYPRQLESLI  564 (720)
Q Consensus       555 ~t~R~le~li  564 (720)
                        +|.|.+++
T Consensus       390 --AR~Lrtil  397 (441)
T TIGR00390       390 --ARRLHTVL  397 (441)
T ss_pred             --hhhHHHHH
Confidence              37776654

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>KOG0733|consensus

Probab=98.57  E-value=6.5e-08  Score=107.36  Aligned_cols=125  Identities=26%  Similarity=0.351  Sum_probs=74.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcccc----ccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSA----VGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~----~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      --|||+||||||||.||+++|+.+.-. |.+-+|...    +|..--.+     ++...++-+   +...|+|+||+|.|
T Consensus       546 sGvLL~GPPGCGKTLlAKAVANEag~N-FisVKGPELlNkYVGESErAV-----R~vFqRAR~---saPCVIFFDEiDaL  616 (802)
T KOG0733|consen  546 SGVLLCGPPGCGKTLLAKAVANEAGAN-FISVKGPELLNKYVGESERAV-----RQVFQRARA---SAPCVIFFDEIDAL  616 (802)
T ss_pred             CceEEeCCCCccHHHHHHHHhhhccCc-eEeecCHHHHHHHhhhHHHHH-----HHHHHHhhc---CCCeEEEecchhhc
Confidence            479999999999999999999876432 222222111    11110000     111111211   23579999999998


Q ss_pred             ChH-----------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--ccee
Q psy17703        422 SDT-----------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDL  488 (720)
Q Consensus       422 ~~~-----------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdl  488 (720)
                      -+.           ..+.|+.-|+         |...  ...+.||||+|.+.             .++||+|+  |||-
T Consensus       617 ~p~R~~~~s~~s~RvvNqLLtElD---------Gl~~--R~gV~viaATNRPD-------------iIDpAiLRPGRlDk  672 (802)
T KOG0733|consen  617 VPRRSDEGSSVSSRVVNQLLTELD---------GLEE--RRGVYVIAATNRPD-------------IIDPAILRPGRLDK  672 (802)
T ss_pred             CcccCCCCchhHHHHHHHHHHHhc---------cccc--ccceEEEeecCCCc-------------ccchhhcCCCccCc
Confidence            642           2334444442         3222  23578999999776             58899998  9996


Q ss_pred             EEEecCCChHHHHHH
Q psy17703        489 IFLLLDPQSEQFDAR  503 (720)
Q Consensus       489 i~~l~d~~~~~~d~~  503 (720)
                      +..+..|..+++..+
T Consensus       673 ~LyV~lPn~~eR~~I  687 (802)
T KOG0733|consen  673 LLYVGLPNAEERVAI  687 (802)
T ss_pred             eeeecCCCHHHHHHH
Confidence            655555555544433

>PRK09087 hypothetical protein; Validated

Probab=98.57  E-value=4.6e-07  Score=92.88  Aligned_cols=175  Identities=15%  Similarity=0.128  Sum_probs=101.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHH
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTT  425 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~  425 (720)
                      -.++|+|++|+|||.|++++++... ..|.+..              ....      ..+.-...++++|||++.++. .
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~-~~~i~~~--------------~~~~------~~~~~~~~~~l~iDDi~~~~~-~  102 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSD-ALLIHPN--------------EIGS------DAANAAAEGPVLIEDIDAGGF-D  102 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcC-CEEecHH--------------Hcch------HHHHhhhcCeEEEECCCCCCC-C
Confidence            3499999999999999998886431 1111110              0000      000011236899999998753 3


Q ss_pred             HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCCChHHHHHH
Q psy17703        426 RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDPQSEQFDAR  503 (720)
Q Consensus       426 ~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~~~~~~d~~  503 (720)
                      +..|.+.+....            ..+..+|-|++.....|..         ..+.|.|||.  +++.+..|.++.....
T Consensus       103 ~~~lf~l~n~~~------------~~g~~ilits~~~p~~~~~---------~~~dL~SRl~~gl~~~l~~pd~e~~~~i  161 (226)
T PRK09087        103 ETGLFHLINSVR------------QAGTSLLMTSRLWPSSWNV---------KLPDLKSRLKAATVVEIGEPDDALLSQV  161 (226)
T ss_pred             HHHHHHHHHHHH------------hCCCeEEEECCCChHHhcc---------ccccHHHHHhCCceeecCCCCHHHHHHH
Confidence            455666553211            1123345555533333321         3578999997  7888888877655444


Q ss_pred             HHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHh
Q psy17703        504 LARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQD  583 (720)
Q Consensus       504 la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~D  583 (720)
                      +.+             .-+...-.+++++.+.|.....             -+.|.++.++.--.+.|.... ..+|...
T Consensus       162 L~~-------------~~~~~~~~l~~ev~~~La~~~~-------------r~~~~l~~~l~~L~~~~~~~~-~~it~~~  214 (226)
T PRK09087        162 IFK-------------LFADRQLYVDPHVVYYLVSRME-------------RSLFAAQTIVDRLDRLALERK-SRITRAL  214 (226)
T ss_pred             HHH-------------HHHHcCCCCCHHHHHHHHHHhh-------------hhHHHHHHHHHHHHHHHHHhC-CCCCHHH
Confidence            332             1122356789999999986542             234666665544444454444 4588877


Q ss_pred             HHHHHHH
Q psy17703        584 VDEAWRL  590 (720)
Q Consensus       584 v~~Ai~l  590 (720)
                      +++++..
T Consensus       215 ~~~~l~~  221 (226)
T PRK09087        215 AAEVLNE  221 (226)
T ss_pred             HHHHHHh
Confidence            7777654

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=98.56  E-value=8.2e-07  Score=98.73  Aligned_cols=202  Identities=15%  Similarity=0.165  Sum_probs=111.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCC------CccccCCccccc-ccc----ceeec-Cccccceeee------cceeee
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPR------SQYTSGKGSSAV-GLT----AYITK-DPETRQMVLQ------TGALVL  407 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr------~~~~~g~~ss~~-glt----a~~~~-~~~~~~~~~~------~G~l~l  407 (720)
                      .+++++|+||||||++++.+++.+..      .+|..+...... .+.    ..+.. ......+...      ...+..
T Consensus        56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~  135 (394)
T PRK00411         56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDE  135 (394)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHh
Confidence            57999999999999999999886521      122222211100 000    00000 0000000000      000000


Q ss_pred             c-CCceeeccccccCC----hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhh
Q psy17703        408 A-DSGVCCIDEFDKMS----DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTL  482 (720)
Q Consensus       408 a-d~gI~~IDEidkm~----~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aL  482 (720)
                      . ..-+++|||+|.+.    .+....|.+.+++.            -..++++|+++|+..-.        +  .+.+.+
T Consensus       136 ~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~------------~~~~v~vI~i~~~~~~~--------~--~l~~~~  193 (394)
T PRK00411        136 RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY------------PGARIGVIGISSDLTFL--------Y--ILDPRV  193 (394)
T ss_pred             cCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc------------CCCeEEEEEEECCcchh--------h--hcCHHH
Confidence            0 12478999999986    22233333333321            01267889999865311        1  266778


Q ss_pred             hccce-eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhc-CCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHH
Q psy17703        483 LSRFD-LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHL-SPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQL  560 (720)
Q Consensus       483 lsRFd-li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~-~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~l  560 (720)
                      .+||. ..+.+.+...++....+.         .++..+   . ...+++++.+.+.+.....          ....|.+
T Consensus       194 ~s~~~~~~i~f~py~~~e~~~il~---------~r~~~~---~~~~~~~~~~l~~i~~~~~~~----------~Gd~r~a  251 (394)
T PRK00411        194 KSVFRPEEIYFPPYTADEIFDILK---------DRVEEG---FYPGVVDDEVLDLIADLTARE----------HGDARVA  251 (394)
T ss_pred             HhcCCcceeecCCCCHHHHHHHHH---------HHHHhh---cccCCCCHhHHHHHHHHHHHh----------cCcHHHH
Confidence            88885 345565555554433333         222111   2 2357888888877654311          1235888


Q ss_pred             HHHHHHHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703        561 ESLIRLSEAHAKMRYSETVEVQDVDEAWRLH  591 (720)
Q Consensus       561 e~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~  591 (720)
                      ..+++.|...|.-+.+..|+.+|+.+|+.-+
T Consensus       252 ~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~  282 (394)
T PRK00411        252 IDLLRRAGLIAEREGSRKVTEEDVRKAYEKS  282 (394)
T ss_pred             HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence            8888888888888888999999999998865

>KOG0991|consensus

Probab=98.56  E-value=1.4e-07  Score=93.74  Aligned_cols=109  Identities=21%  Similarity=0.370  Sum_probs=67.7

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccC----CccccccccceeecCcc----ccceeeecceeeecCCceeeccc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSG----KGSSAVGLTAYITKDPE----TRQMVLQTGALVLADSGVCCIDE  417 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g----~~ss~~glta~~~~~~~----~~~~~~~~G~l~lad~gI~~IDE  417 (720)
                      -|+++.||||||||+-+..+|+.+-...|-.+    +.|..-|..  ++++..    .....+.+|.     -.|+++||
T Consensus        49 P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGID--vVRn~IK~FAQ~kv~lp~gr-----hKIiILDE  121 (333)
T KOG0991|consen   49 PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGID--VVRNKIKMFAQKKVTLPPGR-----HKIIILDE  121 (333)
T ss_pred             CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccH--HHHHHHHHHHHhhccCCCCc-----eeEEEeec
Confidence            49999999999999999999886532222111    111111111  111110    0111222332     46999999


Q ss_pred             cccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703        418 FDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD  487 (720)
Q Consensus       418 idkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd  487 (720)
                      .|.|....|.+|++.||-.+-+             +.+.-|+|...             ++-+|+.||+.
T Consensus       122 ADSMT~gAQQAlRRtMEiyS~t-------------tRFalaCN~s~-------------KIiEPIQSRCA  165 (333)
T KOG0991|consen  122 ADSMTAGAQQALRRTMEIYSNT-------------TRFALACNQSE-------------KIIEPIQSRCA  165 (333)
T ss_pred             cchhhhHHHHHHHHHHHHHccc-------------chhhhhhcchh-------------hhhhhHHhhhH
Confidence            9999999999999999954322             34555667443             46678888886

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=98.56  E-value=6.4e-07  Score=104.25  Aligned_cols=134  Identities=17%  Similarity=0.241  Sum_probs=86.6

Q ss_pred             eeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE-E
Q psy17703        412 VCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI-F  490 (720)
Q Consensus       412 I~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli-~  490 (720)
                      |++|||||.+....+..|+.+++.-.          ...+++.+||.+|+..-.        +  .|.+.+.+||..- +
T Consensus       872 IIILDEID~L~kK~QDVLYnLFR~~~----------~s~SKLiLIGISNdlDLp--------e--rLdPRLRSRLg~eeI  931 (1164)
T PTZ00112        872 ILIIDEIDYLITKTQKVLFTLFDWPT----------KINSKLVLIAISNTMDLP--------E--RLIPRCRSRLAFGRL  931 (1164)
T ss_pred             EEEeehHhhhCccHHHHHHHHHHHhh----------ccCCeEEEEEecCchhcc--------h--hhhhhhhhccccccc
Confidence            79999999998877888888886321          113568899999965311        1  3567888998743 4


Q ss_pred             EecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703        491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH  570 (720)
Q Consensus       491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~  570 (720)
                      .+.+...+++..+|.         .++..    ....+++++.+.+++.-.      .    .....|....++|.|-..
T Consensus       932 vF~PYTaEQL~dILk---------~RAe~----A~gVLdDdAIELIArkVA------q----~SGDARKALDILRrAgEi  988 (1164)
T PTZ00112        932 VFSPYKGDEIEKIIK---------ERLEN----CKEIIDHTAIQLCARKVA------N----VSGDIRKALQICRKAFEN  988 (1164)
T ss_pred             cCCCCCHHHHHHHHH---------HHHHh----CCCCCCHHHHHHHHHhhh------h----cCCHHHHHHHHHHHHHhh
Confidence            445555554443333         22222    234688999888875321      1    112347777777776554


Q ss_pred             HHHcCCCCCCHHhHHHHHHHH
Q psy17703        571 AKMRYSETVEVQDVDEAWRLH  591 (720)
Q Consensus       571 A~l~~~~~V~~~Dv~~Ai~l~  591 (720)
                         +....|+.+|+.+|+..+
T Consensus       989 ---kegskVT~eHVrkAleei 1006 (1164)
T PTZ00112        989 ---KRGQKIVPRDITEATNQL 1006 (1164)
T ss_pred             ---cCCCccCHHHHHHHHHHH
Confidence               345689999999998644

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.54  E-value=1.7e-06  Score=98.17  Aligned_cols=185  Identities=19%  Similarity=0.248  Sum_probs=103.5

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCCCCcccc----C-----------CccccccccceeecCcc-ccceeeecce-eeecCC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVPRSQYTS----G-----------KGSSAVGLTAYITKDPE-TRQMVLQTGA-LVLADS  410 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~pr~~~~~----g-----------~~ss~~glta~~~~~~~-~~~~~~~~G~-l~lad~  410 (720)
                      .||+||||+|||++++.+++.+....-..    +           .......+.++...... .+...-.... -..+..
T Consensus        41 yLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~  120 (486)
T PRK14953         41 YIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKY  120 (486)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCe
Confidence            57899999999999999999775210000    0           00000000000000000 0000000000 012456


Q ss_pred             ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703        411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF  490 (720)
Q Consensus       411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~  490 (720)
                      .|++|||++.|+.+.+++|+..||+.             |..+.+|.++|...             .+++++.+|+. .+
T Consensus       121 KVvIIDEad~Lt~~a~naLLk~LEep-------------p~~~v~Il~tt~~~-------------kl~~tI~SRc~-~i  173 (486)
T PRK14953        121 KVYIIDEAHMLTKEAFNALLKTLEEP-------------PPRTIFILCTTEYD-------------KIPPTILSRCQ-RF  173 (486)
T ss_pred             eEEEEEChhhcCHHHHHHHHHHHhcC-------------CCCeEEEEEECCHH-------------HHHHHHHHhce-EE
Confidence            79999999999999999999999853             22333443443111             37889999996 67


Q ss_pred             EecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703        491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH  570 (720)
Q Consensus       491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~  570 (720)
                      .+.+++.++..             +|+...-+...-.+++++.+.+.+..             ..+.|.+.+++.-+.+.
T Consensus       174 ~f~~ls~~el~-------------~~L~~i~k~egi~id~~al~~La~~s-------------~G~lr~al~~Ldkl~~~  227 (486)
T PRK14953        174 IFSKPTKEQIK-------------EYLKRICNEEKIEYEEKALDLLAQAS-------------EGGMRDAASLLDQASTY  227 (486)
T ss_pred             EcCCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHh
Confidence            77766555433             33332222224467788888777432             12347777766544333


Q ss_pred             HHHcCCCCCCHHhHHHHHH
Q psy17703        571 AKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       571 A~l~~~~~V~~~Dv~~Ai~  589 (720)
                          ....+|.+++.+++.
T Consensus       228 ----~~~~It~~~V~~~lg  242 (486)
T PRK14953        228 ----GEGKVTIKVVEEFLG  242 (486)
T ss_pred             ----cCCCcCHHHHHHHhC
Confidence                245688888888653

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=98.53  E-value=1.8e-06  Score=93.02  Aligned_cols=152  Identities=18%  Similarity=0.248  Sum_probs=85.6

Q ss_pred             cEEE-EcCCCCHHHHHHHHHHhhCCCCc-cccCCccccccccceeecCccccceeeecceeeecCCceeeccccccC-Ch
Q psy17703        347 NILL-CGDPGTSKSQLLSYVYDLVPRSQ-YTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM-SD  423 (720)
Q Consensus       347 ~vLL-~G~PGtGKS~ll~~va~~~pr~~-~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm-~~  423 (720)
                      |++| +||||+|||++++++++.....+ +..+...   .  ....++.. ..+. .... ..+..++++|||++.+ ..
T Consensus        44 ~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~---~--~~~i~~~l-~~~~-~~~~-~~~~~~vliiDe~d~l~~~  115 (316)
T PHA02544         44 NMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDC---R--IDFVRNRL-TRFA-STVS-LTGGGKVIIIDEFDRLGLA  115 (316)
T ss_pred             eEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcc---c--HHHHHHHH-HHHH-Hhhc-ccCCCeEEEEECcccccCH
Confidence            5555 89999999999999998653221 2111110   0  00000000 0000 0000 1235689999999999 66


Q ss_pred             HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHH
Q psy17703        424 TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDAR  503 (720)
Q Consensus       424 ~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~  503 (720)
                      +.+..|...||+.             +.++.+|.++|...             .+++++.+||. .+.+..|+.++....
T Consensus       116 ~~~~~L~~~le~~-------------~~~~~~Ilt~n~~~-------------~l~~~l~sR~~-~i~~~~p~~~~~~~i  168 (316)
T PHA02544        116 DAQRHLRSFMEAY-------------SKNCSFIITANNKN-------------GIIEPLRSRCR-VIDFGVPTKEEQIEM  168 (316)
T ss_pred             HHHHHHHHHHHhc-------------CCCceEEEEcCChh-------------hchHHHHhhce-EEEeCCCCHHHHHHH
Confidence            6788888888752             34567788888432             47899999997 556655555443322


Q ss_pred             HHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q psy17703        504 LARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQT  539 (720)
Q Consensus       504 la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~  539 (720)
                      +..     .+......+.. -...+++++...+.+.
T Consensus       169 l~~-----~~~~~~~~~~~-~~~~i~~~al~~l~~~  198 (316)
T PHA02544        169 MKQ-----MIVRCKGILEA-EGVEVDMKVLAALVKK  198 (316)
T ss_pred             HHH-----HHHHHHHHHHh-cCCCCCHHHHHHHHHh
Confidence            221     11111111111 2445778887777643

>PRK04132 replication factor C small subunit; Provisional

Probab=98.53  E-value=7.7e-07  Score=105.80  Aligned_cols=179  Identities=15%  Similarity=0.213  Sum_probs=104.2

Q ss_pred             ccEEEEc--CCCCHHHHHHHHHHhhCCCC----ccccCCccccccccceeecCcccccee-eecceeeecCCceeecccc
Q psy17703        346 INILLCG--DPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLTAYITKDPETRQMV-LQTGALVLADSGVCCIDEF  418 (720)
Q Consensus       346 i~vLL~G--~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glta~~~~~~~~~~~~-~~~G~l~lad~gI~~IDEi  418 (720)
                      +|-+..|  |.+.|||++|+++++.+...    -+..-..++..|..  .+++.. ..+. ..+  +.-+...|++|||+
T Consensus       565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid--~IR~iI-k~~a~~~~--~~~~~~KVvIIDEa  639 (846)
T PRK04132        565 YHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGIN--VIREKV-KEFARTKP--IGGASFKIIFLDEA  639 (846)
T ss_pred             hhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHH--HHHHHH-HHHHhcCC--cCCCCCEEEEEECc
Confidence            5667778  89999999999999876211    11111122211111  111100 0000 001  00012369999999


Q ss_pred             ccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChH
Q psy17703        419 DKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSE  498 (720)
Q Consensus       419 dkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~  498 (720)
                      |.|+.+.|++|+..||+-             +..+.+|.++|+..             .++++|.||+. ++.+..++++
T Consensus       640 D~Lt~~AQnALLk~lEep-------------~~~~~FILi~N~~~-------------kIi~tIrSRC~-~i~F~~ls~~  692 (846)
T PRK04132        640 DALTQDAQQALRRTMEMF-------------SSNVRFILSCNYSS-------------KIIEPIQSRCA-IFRFRPLRDE  692 (846)
T ss_pred             ccCCHHHHHHHHHHhhCC-------------CCCeEEEEEeCChh-------------hCchHHhhhce-EEeCCCCCHH
Confidence            999999999999999952             23466777888654             58899999994 7888888766


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCC
Q psy17703        499 QFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSET  578 (720)
Q Consensus       499 ~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~  578 (720)
                      +....+.             ...+.-...+++++...++...         .    ...|....++..+.+   .  ...
T Consensus       693 ~i~~~L~-------------~I~~~Egi~i~~e~L~~Ia~~s---------~----GDlR~AIn~Lq~~~~---~--~~~  741 (846)
T PRK04132        693 DIAKRLR-------------YIAENEGLELTEEGLQAILYIA---------E----GDMRRAINILQAAAA---L--DDK  741 (846)
T ss_pred             HHHHHHH-------------HHHHhcCCCCCHHHHHHHHHHc---------C----CCHHHHHHHHHHHHH---h--cCC
Confidence            5433322             2222223446777777776331         1    223655555543322   2  246


Q ss_pred             CCHHhHHHH
Q psy17703        579 VEVQDVDEA  587 (720)
Q Consensus       579 V~~~Dv~~A  587 (720)
                      ++.+++..+
T Consensus       742 It~~~V~~~  750 (846)
T PRK04132        742 ITDENVFLV  750 (846)
T ss_pred             CCHHHHHHH
Confidence            787777665

>KOG0727|consensus

Probab=98.52  E-value=5.2e-07  Score=90.53  Aligned_cols=186  Identities=23%  Similarity=0.292  Sum_probs=105.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCC-ccccCCcccc--ccccceeecCccccceeeecceeeec---CCceeeccccc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRS-QYTSGKGSSA--VGLTAYITKDPETRQMVLQTGALVLA---DSGVCCIDEFD  419 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~-~~~~g~~ss~--~glta~~~~~~~~~~~~~~~G~l~la---d~gI~~IDEid  419 (720)
                      -.|||+||||||||+|++++++..... +...|.+.-.  .|...-+++|           .+-+|   ...|+||||+|
T Consensus       190 rgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrd-----------vfrlakenapsiifideid  258 (408)
T KOG0727|consen  190 RGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRD-----------VFRLAKENAPSIIFIDEID  258 (408)
T ss_pred             cceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHH-----------HHHHHhccCCcEEEeehhh
Confidence            379999999999999999999754322 1111111110  0110011111           01111   24699999998


Q ss_pred             cCC-----------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cc
Q psy17703        420 KMS-----------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RF  486 (720)
Q Consensus       420 km~-----------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RF  486 (720)
                      .+.           .+.|-.|.|.+.|-      .|...  .+++-+|.|+|...             .|.|+||+  |.
T Consensus       259 aiatkrfdaqtgadrevqril~ellnqm------dgfdq--~~nvkvimatnrad-------------tldpallrpgrl  317 (408)
T KOG0727|consen  259 AIATKRFDAQTGADREVQRILIELLNQM------DGFDQ--TTNVKVIMATNRAD-------------TLDPALLRPGRL  317 (408)
T ss_pred             hHhhhhccccccccHHHHHHHHHHHHhc------cCcCc--ccceEEEEecCccc-------------ccCHhhcCCccc
Confidence            753           44566788887653      23222  24567899999654             47889988  88


Q ss_pred             eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703        487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL  566 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl  566 (720)
                      |-.+.++.|+..... .+-..+            -.  +-.+++++-  +.+ |+ .|       +-.+|.-.+.++..-
T Consensus       318 drkiefplpdrrqkr-lvf~ti------------ts--km~ls~~vd--le~-~v-~r-------pdkis~adi~aicqe  371 (408)
T KOG0727|consen  318 DRKIEFPLPDRRQKR-LVFSTI------------TS--KMNLSDEVD--LED-LV-AR-------PDKISGADINAICQE  371 (408)
T ss_pred             cccccCCCCchhhhh-hhHHhh------------hh--cccCCcccC--HHH-Hh-cC-------ccccchhhHHHHHHH
Confidence            888888755433221 111000            00  112222221  111 10 11       112344677788888


Q ss_pred             HHHHHHHcCCCCCCHHhHHHHHH
Q psy17703        567 SEAHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       567 a~A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      |--+|.-.-|-.|...|+++|-.
T Consensus       372 agm~avr~nryvvl~kd~e~ay~  394 (408)
T KOG0727|consen  372 AGMLAVRENRYVVLQKDFEKAYK  394 (408)
T ss_pred             HhHHHHHhcceeeeHHHHHHHHH
Confidence            88888888888999999999843

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=98.52  E-value=2.4e-06  Score=99.01  Aligned_cols=185  Identities=20%  Similarity=0.214  Sum_probs=101.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCcc-cc-CCcccccc------------------cccee-ecCcccccee--eec
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQY-TS-GKGSSAVG------------------LTAYI-TKDPETRQMV--LQT  402 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~-g~~ss~~g------------------lta~~-~~~~~~~~~~--~~~  402 (720)
                      ..+||+||||+|||++++.+++.+..... .. +......|                  +.+.- ..-...++..  .+.
T Consensus        47 ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~  126 (598)
T PRK09111         47 QAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRY  126 (598)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHh
Confidence            35999999999999999999997642110 00 00000000                  00000 0000000000  000


Q ss_pred             ceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhh
Q psy17703        403 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTL  482 (720)
Q Consensus       403 G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aL  482 (720)
                      .. +.++..|++|||++.|+....++|+..||+-             +..+.+|.++|...             ++++++
T Consensus       127 ~P-~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP-------------p~~~~fIl~tte~~-------------kll~tI  179 (598)
T PRK09111        127 RP-VSARYKVYIIDEVHMLSTAAFNALLKTLEEP-------------PPHVKFIFATTEIR-------------KVPVTV  179 (598)
T ss_pred             ch-hcCCcEEEEEEChHhCCHHHHHHHHHHHHhC-------------CCCeEEEEEeCChh-------------hhhHHH
Confidence            11 2456789999999999999999999999862             33444554554221             477889


Q ss_pred             hccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHH
Q psy17703        483 LSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLES  562 (720)
Q Consensus       483 lsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~  562 (720)
                      +||+. .|.+..++.++....+.             ..-+.-.-.+++++.+.|....             ..++|.+.+
T Consensus       180 ~SRcq-~~~f~~l~~~el~~~L~-------------~i~~kegi~i~~eAl~lIa~~a-------------~Gdlr~al~  232 (598)
T PRK09111        180 LSRCQ-RFDLRRIEADVLAAHLS-------------RIAAKEGVEVEDEALALIARAA-------------EGSVRDGLS  232 (598)
T ss_pred             Hhhee-EEEecCCCHHHHHHHHH-------------HHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHH
Confidence            99995 77787776654432222             2212234557777777666431             123455555


Q ss_pred             HHHHHHHHHHHcCCCCCCHHhHHHHH
Q psy17703        563 LIRLSEAHAKMRYSETVEVQDVDEAW  588 (720)
Q Consensus       563 lirla~A~A~l~~~~~V~~~Dv~~Ai  588 (720)
                      ++.-+.++    +...|+.+|+...+
T Consensus       233 ~Ldkli~~----g~g~It~e~V~~ll  254 (598)
T PRK09111        233 LLDQAIAH----GAGEVTAEAVRDML  254 (598)
T ss_pred             HHHHHHhh----cCCCcCHHHHHHHh
Confidence            54322222    23456666666543

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=98.50  E-value=5.8e-07  Score=101.00  Aligned_cols=189  Identities=18%  Similarity=0.229  Sum_probs=106.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC----CCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP----RSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p----r~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      -+++|+|+||+|||.|++++++.+.    +..|.+...... .+... .+......+.    . ....-.+++|||++.+
T Consensus       142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~-~~~~~-l~~~~~~~f~----~-~~~~~dvLiIDDiq~l  214 (445)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE-HLVSA-IRSGEMQRFR----Q-FYRNVDALFIEDIEVF  214 (445)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH-HHHHH-HhcchHHHHH----H-HcccCCEEEEcchhhh
Confidence            3699999999999999999998653    122222110000 00000 0000000000    0 0123569999999998


Q ss_pred             Ch--HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCCCh
Q psy17703        422 SD--TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDPQS  497 (720)
Q Consensus       422 ~~--~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~~~  497 (720)
                      ..  ..+..++..+....-    .|        -.+|.++|..+..         -..+.+.|.|||.  +++.+.+|..
T Consensus       215 ~~k~~~qeelf~l~N~l~~----~~--------k~IIlts~~~p~~---------l~~l~~rL~SR~~~Gl~~~l~~pd~  273 (445)
T PRK12422        215 SGKGATQEEFFHTFNSLHT----EG--------KLIVISSTCAPQD---------LKAMEERLISRFEWGIAIPLHPLTK  273 (445)
T ss_pred             cCChhhHHHHHHHHHHHHH----CC--------CcEEEecCCCHHH---------HhhhHHHHHhhhcCCeEEecCCCCH
Confidence            64  345566665542210    11        1344444422211         1147799999996  8888888876


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH-HH--HHHHHHc
Q psy17703        498 EQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR-LS--EAHAKMR  574 (720)
Q Consensus       498 ~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir-la--~A~A~l~  574 (720)
                      +.....|.             ...+.....+++++.+.|...+.             ...|.|+..+. ++  .|.+.+.
T Consensus       274 e~r~~iL~-------------~k~~~~~~~l~~evl~~la~~~~-------------~dir~L~g~l~~l~~~~a~~~~~  327 (445)
T PRK12422        274 EGLRSFLE-------------RKAEALSIRIEETALDFLIEALS-------------SNVKSLLHALTLLAKRVAYKKLS  327 (445)
T ss_pred             HHHHHHHH-------------HHHHHcCCCCCHHHHHHHHHhcC-------------CCHHHHHHHHHHHHHHHHHHHhh
Confidence            55433322             22222356789999998875432             23477876554 54  4667666


Q ss_pred             CCCCCCHHhHHHHHH
Q psy17703        575 YSETVEVQDVDEAWR  589 (720)
Q Consensus       575 ~~~~V~~~Dv~~Ai~  589 (720)
                      ++ .++.+++++++.
T Consensus       328 ~~-~i~~~~~~~~l~  341 (445)
T PRK12422        328 HQ-LLYVDDIKALLH  341 (445)
T ss_pred             CC-CCCHHHHHHHHH
Confidence            53 578888887765

>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=2.7e-06  Score=98.53  Aligned_cols=188  Identities=20%  Similarity=0.242  Sum_probs=126.3

Q ss_pred             ccccccceeecCcccc------ceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeee-----ccCe---E
Q psy17703        381 SAVGLTAYITKDPETR------QMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIA-----KAGI---I  446 (720)
Q Consensus       381 s~~glta~~~~~~~~~------~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~-----k~g~---~  446 (720)
                      ....|.+.+..++..|      ...++||++-.||+|++||||++.+....+..++.+|+++...+.     ..|.   .
T Consensus       191 ~~~~LlG~Vr~~~~qG~l~~~~~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~  270 (647)
T COG1067         191 IADQLLGSVRHDPYQGGLGTTGHIRVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRP  270 (647)
T ss_pred             ChhhcceeEEEcCCCCccCCCCcccccCcccccccCcEEEEEhhhhhCcHHHHHHHHHHHhccccccCcCccccCcccCC
Confidence            3344445554444433      456899999999999999999999998888899999877643321     1122   2


Q ss_pred             EeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce---eEEEecCCC--hHHHHHHHHhhcchhHHHHHHHHHH
Q psy17703        447 CQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD---LIFLLLDPQ--SEQFDARLARHLDITVLRDYIAYAQ  521 (720)
Q Consensus       447 ~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd---li~~l~d~~--~~~~d~~la~~i~~~~l~~~i~~ar  521 (720)
                      -..|.++-++++.|+..-.           .|-+++.+|.+   ....+.++.  .++...++.        ..|+....
T Consensus       271 e~vP~d~klI~~Gn~~~l~-----------~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~--------~~~~q~v~  331 (647)
T COG1067         271 ESVPLDLKLILAGNREDLE-----------DLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLV--------QFYVQELA  331 (647)
T ss_pred             CCcccceEEEeeCCHHHHH-----------hhcccCHHHHhhcceEEEEcCCCCCChHHHHHHH--------HHHHHHHH
Confidence            2456788889888864311           23344444443   334554332  333333333        22333333


Q ss_pred             hh-cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703        522 EH-LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL  590 (720)
Q Consensus       522 ~~-~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l  590 (720)
                      +. --|.++.+|.+.|....   ++.+...+.++..+|.+-.++|.|--.|..++++.++.+|+++|+..
T Consensus       332 ~d~~ip~~~~~Av~~li~~a---~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~  398 (647)
T COG1067         332 RDGNIPHLDKDAVEELIREA---ARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQK  398 (647)
T ss_pred             hcCCCCCCCHHHHHHHHHHH---HHhccccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHh
Confidence            22 46788888888887543   33345567788899999999999999999999999999999999876

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=98.48  E-value=1.3e-06  Score=102.03  Aligned_cols=183  Identities=19%  Similarity=0.241  Sum_probs=98.7

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCCCCccccCC-cc----ccccccceee-cCcc-------ccceeeeccee-eecCCcee
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVPRSQYTSGK-GS----SAVGLTAYIT-KDPE-------TRQMVLQTGAL-VLADSGVC  413 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~-~s----s~~glta~~~-~~~~-------~~~~~~~~G~l-~lad~gI~  413 (720)
                      .||+||||+|||++|+.+++.+......... ..    ...+....+. -+..       .++..-..... ..+...|+
T Consensus        43 YLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~  122 (725)
T PRK07133         43 YLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIY  122 (725)
T ss_pred             EEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEE
Confidence            6899999999999999999976432110000 00    0000000000 0000       00000000001 12356799


Q ss_pred             eccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecc-cCCCCCCCCCcccccccCCChhhhccceeEEEe
Q psy17703        414 CIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAA-NPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLL  492 (720)
Q Consensus       414 ~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaa-Np~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l  492 (720)
                      +|||++.|+...+++|+..||+-             |..+.+|.++ +|.              .|+++++||+. ++.+
T Consensus       123 IIDEa~~LT~~A~NALLKtLEEP-------------P~~tifILaTte~~--------------KLl~TI~SRcq-~ieF  174 (725)
T PRK07133        123 IIDEVHMLSKSAFNALLKTLEEP-------------PKHVIFILATTEVH--------------KIPLTILSRVQ-RFNF  174 (725)
T ss_pred             EEEChhhCCHHHHHHHHHHhhcC-------------CCceEEEEEcCChh--------------hhhHHHHhhce-eEEc
Confidence            99999999999999999999863             2334444444 332              58899999995 7788


Q ss_pred             cCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703        493 LDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK  572 (720)
Q Consensus       493 ~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~  572 (720)
                      ..++.++....+.             ..-....-.+++++.+.++...             ..+.|.+..++.-..+.  
T Consensus       175 ~~L~~eeI~~~L~-------------~il~kegI~id~eAl~~LA~lS-------------~GslR~AlslLekl~~y--  226 (725)
T PRK07133        175 RRISEDEIVSRLE-------------FILEKENISYEKNALKLIAKLS-------------SGSLRDALSIAEQVSIF--  226 (725)
T ss_pred             cCCCHHHHHHHHH-------------HHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHHHh--
Confidence            7776665433332             2111123455666666665331             12335555544432222  


Q ss_pred             HcCCCCCCHHhHHHHH
Q psy17703        573 MRYSETVEVQDVDEAW  588 (720)
Q Consensus       573 l~~~~~V~~~Dv~~Ai  588 (720)
                       . ...++.+++.+++
T Consensus       227 -~-~~~It~e~V~ell  240 (725)
T PRK07133        227 -G-NNKITLKNVEELF  240 (725)
T ss_pred             -c-cCCCCHHHHHHHH
Confidence             1 2347777776653

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=98.48  E-value=5e-07  Score=102.23  Aligned_cols=189  Identities=19%  Similarity=0.240  Sum_probs=106.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC------CccccCCccccccccceeecCccccceeeecceeeecCCceeecccccc
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR------SQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK  420 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr------~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk  420 (720)
                      +++|+|+||+|||.|++++++.+..      ..|.+..... ..+... .+......+.   .  .+..-.+++|||++.
T Consensus       150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~-~~~~~~-~~~~~~~~~~---~--~~~~~dlLiiDDi~~  222 (450)
T PRK00149        150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT-NDFVNA-LRNNTMEEFK---E--KYRSVDVLLIDDIQF  222 (450)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-HHHHHH-HHcCcHHHHH---H--HHhcCCEEEEehhhh
Confidence            6999999999999999999986532      1121111000 000000 0000000000   0  011345899999998


Q ss_pred             CChH--HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCCC
Q psy17703        421 MSDT--TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDPQ  496 (720)
Q Consensus       421 m~~~--~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~~  496 (720)
                      +...  .+..|+..++...    ..|       ...++++.+|.. .+.         .+.+.|.|||.  +++.+..|.
T Consensus       223 l~~~~~~~~~l~~~~n~l~----~~~-------~~iiits~~~p~-~l~---------~l~~~l~SRl~~gl~v~i~~pd  281 (450)
T PRK00149        223 LAGKERTQEEFFHTFNALH----EAG-------KQIVLTSDRPPK-ELP---------GLEERLRSRFEWGLTVDIEPPD  281 (450)
T ss_pred             hcCCHHHHHHHHHHHHHHH----HCC-------CcEEEECCCCHH-HHH---------HHHHHHHhHhcCCeeEEecCCC
Confidence            7543  3455555543221    011       123444333221 111         26688999996  677887776


Q ss_pred             hHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCC
Q psy17703        497 SEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYS  576 (720)
Q Consensus       497 ~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~  576 (720)
                      .+.....+.         +.   +. .....+++++.+.|++.             +..+.|.|+.++.-..+.|.+..+
T Consensus       282 ~~~r~~il~---------~~---~~-~~~~~l~~e~l~~ia~~-------------~~~~~R~l~~~l~~l~~~~~~~~~  335 (450)
T PRK00149        282 LETRIAILK---------KK---AE-EEGIDLPDEVLEFIAKN-------------ITSNVRELEGALNRLIAYASLTGK  335 (450)
T ss_pred             HHHHHHHHH---------HH---HH-HcCCCCCHHHHHHHHcC-------------cCCCHHHHHHHHHHHHHHHHhhCC
Confidence            655433332         11   11 12557899999888743             234569999988877888877765


Q ss_pred             CCCCHHhHHHHHHH
Q psy17703        577 ETVEVQDVDEAWRL  590 (720)
Q Consensus       577 ~~V~~~Dv~~Ai~l  590 (720)
                       .++.+.+++++.-
T Consensus       336 -~it~~~~~~~l~~  348 (450)
T PRK00149        336 -PITLELAKEALKD  348 (450)
T ss_pred             -CCCHHHHHHHHHH
Confidence             4888888888764

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.47  E-value=1.6e-06  Score=96.41  Aligned_cols=129  Identities=16%  Similarity=0.136  Sum_probs=78.5

Q ss_pred             ecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703        407 LADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF  486 (720)
Q Consensus       407 lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF  486 (720)
                      .++..+++|||+++|+.+.++.|+..||+-             +..+.+|.+++..             ..+.+++.+|+
T Consensus       125 ~~~~kvvIIdea~~l~~~~~~~LLk~LEep-------------~~~t~~Il~t~~~-------------~kl~~tl~sR~  178 (397)
T PRK14955        125 KGRYRVYIIDEVHMLSIAAFNAFLKTLEEP-------------PPHAIFIFATTEL-------------HKIPATIASRC  178 (397)
T ss_pred             cCCeEEEEEeChhhCCHHHHHHHHHHHhcC-------------CCCeEEEEEeCCh-------------HHhHHHHHHHH
Confidence            346679999999999999999999999852             2233444444311             14778999999


Q ss_pred             eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703        487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL  566 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl  566 (720)
                      . ++.+..++.++.             .+++...-+.-...+++++.+.|...-             ..+.|.+...+.-
T Consensus       179 ~-~v~f~~l~~~ei-------------~~~l~~~~~~~g~~i~~~al~~l~~~s-------------~g~lr~a~~~L~k  231 (397)
T PRK14955        179 Q-RFNFKRIPLEEI-------------QQQLQGICEAEGISVDADALQLIGRKA-------------QGSMRDAQSILDQ  231 (397)
T ss_pred             H-HhhcCCCCHHHH-------------HHHHHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHH
Confidence            6 566666655443             333333222234568888888877432             1234666655544


Q ss_pred             HHHHHHH-cCCCCCCHHhHHHHH
Q psy17703        567 SEAHAKM-RYSETVEVQDVDEAW  588 (720)
Q Consensus       567 a~A~A~l-~~~~~V~~~Dv~~Ai  588 (720)
                      ..+.+.- .....|+.+|+.+++
T Consensus       232 l~~~~~~~~~~~~It~~~v~~~v  254 (397)
T PRK14955        232 VIAFSVESEGEGSIRYDKVAELL  254 (397)
T ss_pred             HHHhccccCCCCccCHHHHHHHH
Confidence            3333321 123578888887654

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=98.46  E-value=2.6e-06  Score=96.08  Aligned_cols=153  Identities=19%  Similarity=0.192  Sum_probs=85.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCccc-----c-----------CCccccccccceeecC-ccccceeeecc-eeeec
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQYT-----S-----------GKGSSAVGLTAYITKD-PETRQMVLQTG-ALVLA  408 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~-----~-----------g~~ss~~glta~~~~~-~~~~~~~~~~G-~l~la  408 (720)
                      .+||+||||+|||++++.+++.+......     +           +.......+.+..... ...++..-... .-..+
T Consensus        41 a~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~  120 (451)
T PRK06305         41 AYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKS  120 (451)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcC
Confidence            47899999999999999999976321100     0           0000000000000000 00000000000 00124


Q ss_pred             CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703        409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL  488 (720)
Q Consensus       409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl  488 (720)
                      +..|++|||++.|+.+.+++|+..||+-             +..+.+|.++|..             ..+.+++.+|+. 
T Consensus       121 ~~kvvIIdead~lt~~~~n~LLk~lEep-------------~~~~~~Il~t~~~-------------~kl~~tI~sRc~-  173 (451)
T PRK06305        121 RYKIYIIDEVHMLTKEAFNSLLKTLEEP-------------PQHVKFFLATTEI-------------HKIPGTILSRCQ-  173 (451)
T ss_pred             CCEEEEEecHHhhCHHHHHHHHHHhhcC-------------CCCceEEEEeCCh-------------HhcchHHHHhce-
Confidence            6779999999999999999999999862             2234455555422             147899999996 


Q ss_pred             EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQT  539 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~  539 (720)
                      .+.+..++.++....+..            .++ ...-.+++++.+.|...
T Consensus       174 ~v~f~~l~~~el~~~L~~------------~~~-~eg~~i~~~al~~L~~~  211 (451)
T PRK06305        174 KMHLKRIPEETIIDKLAL------------IAK-QEGIETSREALLPIARA  211 (451)
T ss_pred             EEeCCCCCHHHHHHHHHH------------HHH-HcCCCCCHHHHHHHHHH
Confidence            677777766544322221            122 12445777777777643

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=98.45  E-value=6.6e-07  Score=100.82  Aligned_cols=194  Identities=14%  Similarity=0.256  Sum_probs=109.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCC------CccccCCccccccccceeecCccccceeeecceeeecCCceeeccccc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPR------SQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFD  419 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr------~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEid  419 (720)
                      -+++|+|++|+|||.|++++++.+..      ..|.+..... -.+..+. +... +..  +.-.-...+-.+++|||++
T Consensus       142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~-~~~~~~l-~~~~-~~~--~~~~~~~~~~dvLiIDDiq  216 (450)
T PRK14087        142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA-RKAVDIL-QKTH-KEI--EQFKNEICQNDVLIIDDVQ  216 (450)
T ss_pred             CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-HHHHHHH-HHhh-hHH--HHHHHHhccCCEEEEeccc
Confidence            36999999999999999999885421      1122111000 0000000 0000 000  0000001234689999999


Q ss_pred             cCC--hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCC
Q psy17703        420 KMS--DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDP  495 (720)
Q Consensus       420 km~--~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~  495 (720)
                      .+.  +..++.|+.++....-    .        +-.+|.|+|-.+..         .-.+.+.|.|||.  +++.+.+|
T Consensus       217 ~l~~k~~~~e~lf~l~N~~~~----~--------~k~iIltsd~~P~~---------l~~l~~rL~SR~~~Gl~~~L~~p  275 (450)
T PRK14087        217 FLSYKEKTNEIFFTIFNNFIE----N--------DKQLFFSSDKSPEL---------LNGFDNRLITRFNMGLSIAIQKL  275 (450)
T ss_pred             cccCCHHHHHHHHHHHHHHHH----c--------CCcEEEECCCCHHH---------HhhccHHHHHHHhCCceeccCCc
Confidence            887  4566777777654321    1        11345555533211         1147799999996  77788888


Q ss_pred             ChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcC
Q psy17703        496 QSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRY  575 (720)
Q Consensus       496 ~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~  575 (720)
                      ..++....|.++         +...  .+...+++++.+.|....             ..++|.++.++.-..+.|.+..
T Consensus       276 d~e~r~~iL~~~---------~~~~--gl~~~l~~evl~~Ia~~~-------------~gd~R~L~gaL~~l~~~a~~~~  331 (450)
T PRK14087        276 DNKTATAIIKKE---------IKNQ--NIKQEVTEEAINFISNYY-------------SDDVRKIKGSVSRLNFWSQQNP  331 (450)
T ss_pred             CHHHHHHHHHHH---------HHhc--CCCCCCCHHHHHHHHHcc-------------CCCHHHHHHHHHHHHHHHhccc
Confidence            776654444322         1111  122368999998887542             3457999987754446666653


Q ss_pred             C-CCCCHHhHHHHHH
Q psy17703        576 S-ETVEVQDVDEAWR  589 (720)
Q Consensus       576 ~-~~V~~~Dv~~Ai~  589 (720)
                      . ..++.+.+.+++.
T Consensus       332 ~~~~it~~~v~~~l~  346 (450)
T PRK14087        332 EEKIITIEIVSDLFR  346 (450)
T ss_pred             CCCCCCHHHHHHHHh
Confidence            2 5688888887765

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=98.44  E-value=9.1e-07  Score=98.83  Aligned_cols=189  Identities=17%  Similarity=0.215  Sum_probs=104.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCC------CccccCCccccccccceeecCccccceeeecceeeecCCceeeccccc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPR------SQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFD  419 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr------~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEid  419 (720)
                      -+++|+|+||+|||.|++++++.+-.      ..|.+...... .+.... .+.....+.   ..  +....+++|||++
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~-~~~~~~-~~~~~~~~~---~~--~~~~dlLiiDDi~  209 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN-DFVNAL-RNNKMEEFK---EK--YRSVDLLLIDDIQ  209 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH-HHHHHH-HcCCHHHHH---HH--HHhCCEEEEehhh
Confidence            36899999999999999999986521      11221110000 000000 000000000   00  1234689999999


Q ss_pred             cCChH--HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCC
Q psy17703        420 KMSDT--TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDP  495 (720)
Q Consensus       420 km~~~--~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~  495 (720)
                      .+...  .+..|+..++...    ..        +..++.++|-.+..+         -.+.+.|.|||.  +.+.+..|
T Consensus       210 ~l~~~~~~~~~l~~~~n~~~----~~--------~~~iiits~~~p~~l---------~~l~~~l~SRl~~g~~v~i~~p  268 (405)
T TIGR00362       210 FLAGKERTQEEFFHTFNALH----EN--------GKQIVLTSDRPPKEL---------PGLEERLRSRFEWGLVVDIEPP  268 (405)
T ss_pred             hhcCCHHHHHHHHHHHHHHH----HC--------CCCEEEecCCCHHHH---------hhhhhhhhhhccCCeEEEeCCC
Confidence            87543  4555666554321    01        112334444222111         126688999997  56777766


Q ss_pred             ChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcC
Q psy17703        496 QSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRY  575 (720)
Q Consensus       496 ~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~  575 (720)
                      ..+.+...+.         +.   ++. ....+++++.+.|.+.+             ..+.|.|+.++.-..+.|.+..
T Consensus       269 d~~~r~~il~---------~~---~~~-~~~~l~~e~l~~ia~~~-------------~~~~r~l~~~l~~l~~~a~~~~  322 (405)
T TIGR00362       269 DLETRLAILQ---------KK---AEE-EGLELPDEVLEFIAKNI-------------RSNVRELEGALNRLLAYASLTG  322 (405)
T ss_pred             CHHHHHHHHH---------HH---HHH-cCCCCCHHHHHHHHHhc-------------CCCHHHHHHHHHHHHHHHHHhC
Confidence            6554433322         21   222 35678999988887543             2346999988876677777765


Q ss_pred             CCCCCHHhHHHHHH
Q psy17703        576 SETVEVQDVDEAWR  589 (720)
Q Consensus       576 ~~~V~~~Dv~~Ai~  589 (720)
                       ..+|.+.+.+++.
T Consensus       323 -~~it~~~~~~~L~  335 (405)
T TIGR00362       323 -KPITLELAKEALK  335 (405)
T ss_pred             -CCCCHHHHHHHHH
Confidence             4588877777755

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK04195 replication factor C large subunit; Provisional

Probab=98.44  E-value=1.8e-06  Score=98.46  Aligned_cols=144  Identities=16%  Similarity=0.160  Sum_probs=81.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCc-ccccee---eecceeeecCCceeecccccc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDP-ETRQMV---LQTGALVLADSGVCCIDEFDK  420 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~-~~~~~~---~~~G~l~lad~gI~~IDEidk  420 (720)
                      .-++||+||||+|||++++++++.+...+..         +.++-.+.. ......   .....+.-....+++|||+|.
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~~~ie---------lnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~  109 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGWEVIE---------LNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDG  109 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEE---------EcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcc
Confidence            4589999999999999999999977432111         111100000 000000   000111102467999999999


Q ss_pred             CCh----HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCCh-hhhccceeEEEecCC
Q psy17703        421 MSD----TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPH-TLLSRFDLIFLLLDP  495 (720)
Q Consensus       421 m~~----~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~-aLlsRFdli~~l~d~  495 (720)
                      +..    ....+|+..++..               +..+|.++|...             .++. +|.+|+. .+.+..+
T Consensus       110 L~~~~d~~~~~aL~~~l~~~---------------~~~iIli~n~~~-------------~~~~k~Lrsr~~-~I~f~~~  160 (482)
T PRK04195        110 IHGNEDRGGARAILELIKKA---------------KQPIILTANDPY-------------DPSLRELRNACL-MIEFKRL  160 (482)
T ss_pred             cccccchhHHHHHHHHHHcC---------------CCCEEEeccCcc-------------ccchhhHhccce-EEEecCC
Confidence            976    3466777777632               234566677443             2334 6777774 6777766


Q ss_pred             ChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q psy17703        496 QSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQT  539 (720)
Q Consensus       496 ~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~  539 (720)
                      ..++....+.             ..-..-...+++++.+.|++.
T Consensus       161 ~~~~i~~~L~-------------~i~~~egi~i~~eaL~~Ia~~  191 (482)
T PRK04195        161 STRSIVPVLK-------------RICRKEGIECDDEALKEIAER  191 (482)
T ss_pred             CHHHHHHHHH-------------HHHHHcCCCCCHHHHHHHHHH
Confidence            6554332222             111122446788888888743

>PRK11823 DNA repair protein RadA; Provisional

Probab=98.44  E-value=1.7e-07  Score=105.50  Aligned_cols=86  Identities=23%  Similarity=0.400  Sum_probs=59.1

Q ss_pred             hheeecccCCceeeeeeccCcccCCccCCCCCCCCcceeeccC------CccchhhhhhhhcCC--------------C-
Q psy17703        286 EAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNR------SHFTDKQLVRLQETP--------------A-  344 (720)
Q Consensus       286 ~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~~~~~~~~------s~~~d~Q~iklQE~p--------------g-  344 (720)
                      +..|+|++||+....|..+        ||+|+.|++|+-....      +.....+.+..++.+              | 
T Consensus         5 ~~~y~C~~Cg~~~~~~~g~--------Cp~C~~w~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~ri~TGi~~LD~~LgGG   76 (446)
T PRK11823          5 KTAYVCQECGAESPKWLGR--------CPECGAWNTLVEEVAASKAGSSKPVQPLSDIEAEEEPRISTGIGELDRVLGGG   76 (446)
T ss_pred             CCeEECCcCCCCCcccCee--------CcCCCCccceeeecccccccCCCCceehhhcccccCCcccCCcHHHHHHhcCC
Confidence            5689999999999999876        9999999998763210      111122333333222              2 


Q ss_pred             ---CccEEEEcCCCCHHHHHHHHHHhhCC----CCccccCCc
Q psy17703        345 ---EINILLCGDPGTSKSQLLSYVYDLVP----RSQYTSGKG  379 (720)
Q Consensus       345 ---~i~vLL~G~PGtGKS~ll~~va~~~p----r~~~~~g~~  379 (720)
                         ..-+||.|+||+|||+|+..++....    +..|.++.+
T Consensus        77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee  118 (446)
T PRK11823         77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE  118 (446)
T ss_pred             ccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence               33789999999999999988876542    345665554

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.42  E-value=3e-06  Score=93.45  Aligned_cols=154  Identities=17%  Similarity=0.217  Sum_probs=86.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCcccc-CC--ccccccccceeecC-ccccceeeeccee-eecCCceeecccccc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTS-GK--GSSAVGLTAYITKD-PETRQMVLQTGAL-VLADSGVCCIDEFDK  420 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~-g~--~ss~~glta~~~~~-~~~~~~~~~~G~l-~lad~gI~~IDEidk  420 (720)
                      .++||+||||+|||++++.+++.+....... +.  ......+.+..... ....+..-+.... ..++..+++|||++.
T Consensus        40 ~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~  119 (367)
T PRK14970         40 QALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHM  119 (367)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhh
Confidence            4799999999999999999998764321111 00  00011111100000 0000000000010 124567999999999


Q ss_pred             CChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHH
Q psy17703        421 MSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQF  500 (720)
Q Consensus       421 m~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~  500 (720)
                      |+...++.|+..||+.             +..+.+|.++|..             -.+.+++.+|+. ++.+..++.++.
T Consensus       120 l~~~~~~~ll~~le~~-------------~~~~~~Il~~~~~-------------~kl~~~l~sr~~-~v~~~~~~~~~l  172 (367)
T PRK14970        120 LSSAAFNAFLKTLEEP-------------PAHAIFILATTEK-------------HKIIPTILSRCQ-IFDFKRITIKDI  172 (367)
T ss_pred             cCHHHHHHHHHHHhCC-------------CCceEEEEEeCCc-------------ccCCHHHHhcce-eEecCCccHHHH
Confidence            9998889999888752             2234455455421             147789999996 566766655543


Q ss_pred             HHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q psy17703        501 DARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQT  539 (720)
Q Consensus       501 d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~  539 (720)
                      ..             ++...-+.-.-.+++++.+.+...
T Consensus       173 ~~-------------~l~~~~~~~g~~i~~~al~~l~~~  198 (367)
T PRK14970        173 KE-------------HLAGIAVKEGIKFEDDALHIIAQK  198 (367)
T ss_pred             HH-------------HHHHHHHHcCCCCCHHHHHHHHHh
Confidence            22             222211122445788888888753

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.40  E-value=1.7e-06  Score=100.90  Aligned_cols=127  Identities=22%  Similarity=0.215  Sum_probs=72.7

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCcc------ccCC-----------cccccccccee-ecCccccceeeecc-eee
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQY------TSGK-----------GSSAVGLTAYI-TKDPETRQMVLQTG-ALV  406 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~------~~g~-----------~ss~~glta~~-~~~~~~~~~~~~~G-~l~  406 (720)
                      .++||+||||+|||++|+.+++.+.....      .+|.           ......+.+.. ..-...++...... .-+
T Consensus        39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~  118 (620)
T PRK14948         39 PAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPV  118 (620)
T ss_pred             ceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChh
Confidence            58999999999999999999997753211      1110           00000000000 00000000000000 001


Q ss_pred             ecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703        407 LADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF  486 (720)
Q Consensus       407 lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF  486 (720)
                      .+...|++|||++.|+.+.+++|+..||+-             +..+.+|.++|-..             .+.++|.||+
T Consensus       119 ~~~~KViIIDEad~Lt~~a~naLLK~LEeP-------------p~~tvfIL~t~~~~-------------~llpTIrSRc  172 (620)
T PRK14948        119 QARWKVYVIDECHMLSTAAFNALLKTLEEP-------------PPRVVFVLATTDPQ-------------RVLPTIISRC  172 (620)
T ss_pred             cCCceEEEEECccccCHHHHHHHHHHHhcC-------------CcCeEEEEEeCChh-------------hhhHHHHhhe
Confidence            245579999999999999999999999852             23344444444111             3778999999


Q ss_pred             eeEEEecCCChHH
Q psy17703        487 DLIFLLLDPQSEQ  499 (720)
Q Consensus       487 dli~~l~d~~~~~  499 (720)
                      . .+.+..++.++
T Consensus       173 ~-~~~f~~l~~~e  184 (620)
T PRK14948        173 Q-RFDFRRIPLEA  184 (620)
T ss_pred             e-EEEecCCCHHH
Confidence            5 56676665543

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=98.40  E-value=4.1e-06  Score=85.95  Aligned_cols=187  Identities=18%  Similarity=0.269  Sum_probs=102.1

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCcccc--CCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTS--GKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~--g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      ...-.+.||+|||||..++.+++.+.+.+++-  ....+...+.           . +-.|.  ...|..+|+|||++++
T Consensus        32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~-----------r-il~G~--~~~GaW~cfdefnrl~   97 (231)
T PF12774_consen   32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLS-----------R-ILKGL--AQSGAWLCFDEFNRLS   97 (231)
T ss_dssp             TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHH-----------H-HHHHH--HHHT-EEEEETCCCSS
T ss_pred             CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHH-----------H-HHHHH--hhcCchhhhhhhhhhh
Confidence            34556899999999999999999998765532  1111111110           0 00121  1236689999999999


Q ss_pred             hHHHHHH-------HHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCC
Q psy17703        423 DTTRSIL-------HEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDP  495 (720)
Q Consensus       423 ~~~~~~L-------~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~  495 (720)
                      .+....+       ..++..+.-.+.-.|....++..+.+..|+||.+.+         ...||+.|..-|- -+.+..|
T Consensus        98 ~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~g---------r~~LP~nLk~lFR-pvam~~P  167 (231)
T PF12774_consen   98 EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAG---------RSELPENLKALFR-PVAMMVP  167 (231)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCC---------C--S-HHHCTTEE-EEE--S-
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCC---------cccCCHhHHHHhh-eeEEeCC
Confidence            9876655       344443333333478888999999999999997533         2358999988885 4444444


Q ss_pred             ChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHH
Q psy17703        496 QSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHA  571 (720)
Q Consensus       496 ~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A  571 (720)
                      +-...    +         +..-.+.   --.-.....+.+...|...+..-....+....-|.+.++++.|...-
T Consensus       168 D~~~I----~---------ei~L~s~---GF~~a~~La~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~~a~~~k  227 (231)
T PF12774_consen  168 DLSLI----A---------EILLLSQ---GFKDAKSLAKKLVSLFQLCKEQLSKQDHYDFGLRALKSVLRMAGSLK  227 (231)
T ss_dssp             -HHHH----H---------HHHHHCC---CTSSHHHHHHHHHHHHHHHHHCS-SSTT---SHHHHHHHHHHHHHHH
T ss_pred             CHHHH----H---------HHHHHHc---CchhHHHHHHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHHHHh
Confidence            33211    1         1111111   11223455566666666655554444555555699999999886653

>KOG0726|consensus

Probab=98.40  E-value=4.8e-07  Score=92.50  Aligned_cols=191  Identities=20%  Similarity=0.266  Sum_probs=102.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCcc--ccceeeecceeeecCCceeeccccccCC-
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPE--TRQMVLQTGALVLADSGVCCIDEFDKMS-  422 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~--~~~~~~~~G~l~lad~gI~~IDEidkm~-  422 (720)
                      -.|+|+|+||||||.||+++|+..... |.-..++.   +.-.+..+..  .++..--++.   -...|+||||||... 
T Consensus       220 KGVIlyG~PGTGKTLLAKAVANqTSAT-FlRvvGse---LiQkylGdGpklvRqlF~vA~e---~apSIvFiDEIdAiGt  292 (440)
T KOG0726|consen  220 KGVILYGEPGTGKTLLAKAVANQTSAT-FLRVVGSE---LIQKYLGDGPKLVRELFRVAEE---HAPSIVFIDEIDAIGT  292 (440)
T ss_pred             CeeEEeCCCCCchhHHHHHHhcccchh-hhhhhhHH---HHHHHhccchHHHHHHHHHHHh---cCCceEEeehhhhhcc
Confidence            368999999999999999999754311 10000110   0000000000  0000000110   125799999999864 


Q ss_pred             ----------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeEE
Q psy17703        423 ----------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLIF  490 (720)
Q Consensus       423 ----------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli~  490 (720)
                                .+.|..++|.+.|-      .|...  ..++-||.|+|...             .|.|+|++  |.|-.+
T Consensus       293 KRyds~SggerEiQrtmLELLNQl------dGFds--rgDvKvimATnrie-------------~LDPaLiRPGrIDrKI  351 (440)
T KOG0726|consen  293 KRYDSNSGGEREIQRTMLELLNQL------DGFDS--RGDVKVIMATNRIE-------------TLDPALIRPGRIDRKI  351 (440)
T ss_pred             ccccCCCccHHHHHHHHHHHHHhc------cCccc--cCCeEEEEeccccc-------------ccCHhhcCCCcccccc
Confidence                      34566788888653      22221  45688999999776             58899988  999888


Q ss_pred             EecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHH-HHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703        491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEAS-QRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA  569 (720)
Q Consensus       491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~-~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A  569 (720)
                      .+..|+.....+++.-|-+.               -.+.+++- +.++    .      .+..++.  -.+.++..-|--
T Consensus       352 ef~~pDe~TkkkIf~IHTs~---------------Mtl~~dVnle~li----~------~kddlSG--AdIkAictEaGl  404 (440)
T KOG0726|consen  352 EFPLPDEKTKKKIFQIHTSR---------------MTLAEDVNLEELI----M------TKDDLSG--ADIKAICTEAGL  404 (440)
T ss_pred             ccCCCchhhhceeEEEeecc---------------cchhccccHHHHh----h------ccccccc--ccHHHHHHHHhH
Confidence            88777544333222222111               11111110 1111    0      0111111  334455555555


Q ss_pred             HHHHcCCCCCCHHhHHHHHHHH
Q psy17703        570 HAKMRYSETVEVQDVDEAWRLH  591 (720)
Q Consensus       570 ~A~l~~~~~V~~~Dv~~Ai~l~  591 (720)
                      +|.-+-|-.|+.+|...|.+-.
T Consensus       405 lAlRerRm~vt~~DF~ka~e~V  426 (440)
T KOG0726|consen  405 LALRERRMKVTMEDFKKAKEKV  426 (440)
T ss_pred             HHHHHHHhhccHHHHHHHHHHH
Confidence            5555556789999999997743

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.39  E-value=6.2e-06  Score=96.21  Aligned_cols=184  Identities=18%  Similarity=0.255  Sum_probs=97.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCc---------------cccccccceeecC-cccccee--eecceeee
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKG---------------SSAVGLTAYITKD-PETRQMV--LQTGALVL  407 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~---------------ss~~glta~~~~~-~~~~~~~--~~~G~l~l  407 (720)
                      .+||+||||+|||++++.+++.+..... ..+..               .....+.+..... ...++..  ..... ..
T Consensus        40 a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p-~~  118 (585)
T PRK14950         40 AYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRP-AL  118 (585)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCc-cc
Confidence            4699999999999999999987642110 00000               0000000000000 0000000  00001 23


Q ss_pred             cCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703        408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD  487 (720)
Q Consensus       408 ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd  487 (720)
                      ++..|++|||++.|+.+.++.|+..||+-.             ..+.+|.+++...             .+.+++.||+.
T Consensus       119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp-------------~~tv~Il~t~~~~-------------kll~tI~SR~~  172 (585)
T PRK14950        119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPP-------------PHAIFILATTEVH-------------KVPATILSRCQ  172 (585)
T ss_pred             CCeEEEEEeChHhCCHHHHHHHHHHHhcCC-------------CCeEEEEEeCChh-------------hhhHHHHhccc
Confidence            567899999999999999999999998631             2334444443111             36788999996


Q ss_pred             eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHH
Q psy17703        488 LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS  567 (720)
Q Consensus       488 li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla  567 (720)
                       .+.+......+....             +......-.-.+++++.+.|.+..             ..++|.+...+.-.
T Consensus       173 -~i~f~~l~~~el~~~-------------L~~~a~~egl~i~~eal~~La~~s-------------~Gdlr~al~~LekL  225 (585)
T PRK14950        173 -RFDFHRHSVADMAAH-------------LRKIAAAEGINLEPGALEAIARAA-------------TGSMRDAENLLQQL  225 (585)
T ss_pred             -eeeCCCCCHHHHHHH-------------HHHHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHH
Confidence             566766555433222             221111123457778777776432             12345555544321


Q ss_pred             HHHHHHcCCCCCCHHhHHHHH
Q psy17703        568 EAHAKMRYSETVEVQDVDEAW  588 (720)
Q Consensus       568 ~A~A~l~~~~~V~~~Dv~~Ai  588 (720)
                      ..   . ....++.+++..++
T Consensus       226 ~~---y-~~~~It~e~V~~ll  242 (585)
T PRK14950        226 AT---T-YGGEISLSQVQSLL  242 (585)
T ss_pred             HH---h-cCCCCCHHHHHHHh
Confidence            11   1 23467777776643

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=98.39  E-value=1.5e-06  Score=99.58  Aligned_cols=188  Identities=20%  Similarity=0.236  Sum_probs=108.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC------CccccCCccccccccceeecCccccceeeecceeeecCCceeecccccc
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR------SQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK  420 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr------~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk  420 (720)
                      +++|+|++|+|||.|++++++.+-.      ..|.+..... ..+...+ ++.....+..     .+.+-.+++||||+.
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~-~el~~al-~~~~~~~f~~-----~y~~~DLLlIDDIq~  388 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT-NEFINSI-RDGKGDSFRR-----RYREMDILLVDDIQF  388 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH-HHHHHHH-HhccHHHHHH-----HhhcCCEEEEehhcc
Confidence            4999999999999999999986521      1222211100 0000000 0000000000     012346899999998


Q ss_pred             CChH--HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCCC
Q psy17703        421 MSDT--TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDPQ  496 (720)
Q Consensus       421 m~~~--~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~~  496 (720)
                      +...  .+..|+.+++...            ..+-.+|-|+|-....+.         .+.+.|.|||.  +++.+..|.
T Consensus       389 l~gke~tqeeLF~l~N~l~------------e~gk~IIITSd~~P~eL~---------~l~~rL~SRf~~GLvv~I~~PD  447 (617)
T PRK14086        389 LEDKESTQEEFFHTFNTLH------------NANKQIVLSSDRPPKQLV---------TLEDRLRNRFEWGLITDVQPPE  447 (617)
T ss_pred             ccCCHHHHHHHHHHHHHHH------------hcCCCEEEecCCChHhhh---------hccHHHHhhhhcCceEEcCCCC
Confidence            8553  3566767765432            112335556664433221         37789999996  677777777


Q ss_pred             hHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCC
Q psy17703        497 SEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYS  576 (720)
Q Consensus       497 ~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~  576 (720)
                      ++.+...|.+            .++. -...+++++.++|...+             .-+.|.|+.++.--.+.|.+.. 
T Consensus       448 ~EtR~aIL~k------------ka~~-r~l~l~~eVi~yLa~r~-------------~rnvR~LegaL~rL~a~a~~~~-  500 (617)
T PRK14086        448 LETRIAILRK------------KAVQ-EQLNAPPEVLEFIASRI-------------SRNIRELEGALIRVTAFASLNR-  500 (617)
T ss_pred             HHHHHHHHHH------------HHHh-cCCCCCHHHHHHHHHhc-------------cCCHHHHHHHHHHHHHHHHhhC-
Confidence            6654433332            1222 35678999999887543             2245888886665556676655 


Q ss_pred             CCCCHHhHHHHHH
Q psy17703        577 ETVEVQDVDEAWR  589 (720)
Q Consensus       577 ~~V~~~Dv~~Ai~  589 (720)
                      ..++.+.++++++
T Consensus       501 ~~itl~la~~vL~  513 (617)
T PRK14086        501 QPVDLGLTEIVLR  513 (617)
T ss_pred             CCCCHHHHHHHHH
Confidence            4578777777665

>KOG0743|consensus

Probab=98.36  E-value=1.6e-06  Score=94.37  Aligned_cols=118  Identities=23%  Similarity=0.285  Sum_probs=71.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT  424 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~  424 (720)
                      .--=||+||||||||+|+.++|+.+.-.+|--  .-+.+..+.      .     ++-=.+..++..|++|.+||..-.-
T Consensus       235 KRGYLLYGPPGTGKSS~IaAmAn~L~ydIydL--eLt~v~~n~------d-----Lr~LL~~t~~kSIivIEDIDcs~~l  301 (457)
T KOG0743|consen  235 KRGYLLYGPPGTGKSSFIAAMANYLNYDIYDL--ELTEVKLDS------D-----LRHLLLATPNKSILLIEDIDCSFDL  301 (457)
T ss_pred             hccceeeCCCCCCHHHHHHHHHhhcCCceEEe--eeccccCcH------H-----HHHHHHhCCCCcEEEEeeccccccc
Confidence            34789999999999999999999887655521  111111111      1     1111223346789999999875210


Q ss_pred             ------------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--
Q psy17703        425 ------------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--  484 (720)
Q Consensus       425 ------------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--  484 (720)
                                        ..+.|+-++         +|.+..--..-.|+.|+|..+             +|+|||++  
T Consensus       302 ~~~~~~~~~~~~~~~~~VTlSGLLNfi---------DGlwSscg~ERIivFTTNh~E-------------kLDPALlRpG  359 (457)
T KOG0743|consen  302 RERRKKKKENFEGDLSRVTLSGLLNFL---------DGLWSSCGDERIIVFTTNHKE-------------KLDPALLRPG  359 (457)
T ss_pred             ccccccccccccCCcceeehHHhhhhh---------ccccccCCCceEEEEecCChh-------------hcCHhhcCCC
Confidence                              011222222         333322212335777888665             79999999  


Q ss_pred             cceeEEEecCCCh
Q psy17703        485 RFDLIFLLLDPQS  497 (720)
Q Consensus       485 RFdli~~l~d~~~  497 (720)
                      |.|+.+.+..=..
T Consensus       360 RmDmhI~mgyCtf  372 (457)
T KOG0743|consen  360 RMDMHIYMGYCTF  372 (457)
T ss_pred             cceeEEEcCCCCH
Confidence            9999888875443

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.33  E-value=5.4e-06  Score=87.01  Aligned_cols=209  Identities=16%  Similarity=0.095  Sum_probs=114.1

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCC-ccccC---Ccccccccc---ceeecCccccce------eeec---ceeee
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRS-QYTSG---KGSSAVGLT---AYITKDPETRQM------VLQT---GALVL  407 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~-~~~~g---~~ss~~glt---a~~~~~~~~~~~------~~~~---G~l~l  407 (720)
                      +...++|+|+||+|||++++.+++.++.. +....   ...+...+.   +....-+..+..      .+..   .....
T Consensus        42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~  121 (269)
T TIGR03015        42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAA  121 (269)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence            34468999999999999999999877532 11100   000000000   000000000000      0000   00001


Q ss_pred             cCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703        408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD  487 (720)
Q Consensus       408 ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd  487 (720)
                      ....+++|||++.++......|....+-..     .     -...+.++.+..|.....     + .. .-..++.+|+.
T Consensus       122 ~~~~vliiDe~~~l~~~~~~~l~~l~~~~~-----~-----~~~~~~vvl~g~~~~~~~-----l-~~-~~~~~l~~r~~  184 (269)
T TIGR03015       122 GKRALLVVDEAQNLTPELLEELRMLSNFQT-----D-----NAKLLQIFLVGQPEFRET-----L-QS-PQLQQLRQRII  184 (269)
T ss_pred             CCCeEEEEECcccCCHHHHHHHHHHhCccc-----C-----CCCeEEEEEcCCHHHHHH-----H-cC-chhHHHHhhee
Confidence            123588999999999887776665443211     0     012245556555532110     0 00 11246788887


Q ss_pred             eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHH
Q psy17703        488 LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS  567 (720)
Q Consensus       488 li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla  567 (720)
                      ..+.+.+.+.++....+.         ..+..+...-.+.+++++.+.|.+.-             ...||.+..+...+
T Consensus       185 ~~~~l~~l~~~e~~~~l~---------~~l~~~g~~~~~~~~~~~~~~i~~~s-------------~G~p~~i~~l~~~~  242 (269)
T TIGR03015       185 ASCHLGPLDREETREYIE---------HRLERAGNRDAPVFSEGAFDAIHRFS-------------RGIPRLINILCDRL  242 (269)
T ss_pred             eeeeCCCCCHHHHHHHHH---------HHHHHcCCCCCCCcCHHHHHHHHHHc-------------CCcccHHHHHHHHH
Confidence            777777666554322221         11222211113468888888887431             12358899999999


Q ss_pred             HHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703        568 EAHAKMRYSETVEVQDVDEAWRLH  591 (720)
Q Consensus       568 ~A~A~l~~~~~V~~~Dv~~Ai~l~  591 (720)
                      ...|..+..+.|+.+++++|+.-+
T Consensus       243 ~~~a~~~~~~~i~~~~v~~~~~~~  266 (269)
T TIGR03015       243 LLSAFLEEKREIGGEEVREVIAEI  266 (269)
T ss_pred             HHHHHHcCCCCCCHHHHHHHHHHh
Confidence            999988999999999999998743

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=98.33  E-value=1.4e-06  Score=96.40  Aligned_cols=130  Identities=17%  Similarity=0.213  Sum_probs=78.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCcc---c-----------cCCccccccccc--eeecCccccce----eeeccee
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQY---T-----------SGKGSSAVGLTA--YITKDPETRQM----VLQTGAL  405 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~---~-----------~g~~ss~~glta--~~~~~~~~~~~----~~~~G~l  405 (720)
                      ..+||+||||+|||++++.+++.+-...-   .           .|...+..-+..  ...+-...++.    ...|   
T Consensus        37 ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p---  113 (394)
T PRK07940         37 HAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRP---  113 (394)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCc---
Confidence            35899999999999999999986532110   0           000000000000  00000000000    0111   


Q ss_pred             eecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcc
Q psy17703        406 VLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSR  485 (720)
Q Consensus       406 ~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsR  485 (720)
                      ..+...|++|||+|+|++..+++|+..||+-.            +....|++|+||.              .++++++||
T Consensus       114 ~~~~~kViiIDead~m~~~aanaLLk~LEep~------------~~~~fIL~a~~~~--------------~llpTIrSR  167 (394)
T PRK07940        114 STGRWRIVVIEDADRLTERAANALLKAVEEPP------------PRTVWLLCAPSPE--------------DVLPTIRSR  167 (394)
T ss_pred             ccCCcEEEEEechhhcCHHHHHHHHHHhhcCC------------CCCeEEEEECChH--------------HChHHHHhh
Confidence            12345699999999999999999999998631            1224567777753              488999999


Q ss_pred             ceeEEEecCCChHHHHHHHH
Q psy17703        486 FDLIFLLLDPQSEQFDARLA  505 (720)
Q Consensus       486 Fdli~~l~d~~~~~~d~~la  505 (720)
                      +- .+.+..|+.++....+.
T Consensus       168 c~-~i~f~~~~~~~i~~~L~  186 (394)
T PRK07940        168 CR-HVALRTPSVEAVAEVLV  186 (394)
T ss_pred             Ce-EEECCCCCHHHHHHHHH
Confidence            94 77788777666554444

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.33  E-value=1e-05  Score=94.12  Aligned_cols=92  Identities=15%  Similarity=0.191  Sum_probs=61.0

Q ss_pred             ecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEE-EecccCCCCCCCCCcccccccCCChhhhcc
Q psy17703        407 LADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSI-LAAANPCDSQWNTSKTIIDNIRLPHTLLSR  485 (720)
Q Consensus       407 lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~i-iaaaNp~~g~~~~~~~~~~~~~l~~aLlsR  485 (720)
                      .++..|++|||+++|+...+++|+..||+-             |..+.+ +++.++              ..+.+++.+|
T Consensus       125 ~~~~KVvIIdEad~Lt~~a~naLLK~LEeP-------------p~~tv~IL~t~~~--------------~kLl~TI~SR  177 (620)
T PRK14954        125 KGRYRVYIIDEVHMLSTAAFNAFLKTLEEP-------------PPHAIFIFATTEL--------------HKIPATIASR  177 (620)
T ss_pred             cCCCEEEEEeChhhcCHHHHHHHHHHHhCC-------------CCCeEEEEEeCCh--------------hhhhHHHHhh
Confidence            356779999999999999999999999862             122333 344332              1588899999


Q ss_pred             ceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q psy17703        486 FDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQT  539 (720)
Q Consensus       486 Fdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~  539 (720)
                      +. ++.+..++.++.             .+++...-..-.-.+++++.+.|+..
T Consensus       178 c~-~vef~~l~~~ei-------------~~~L~~i~~~egi~I~~eal~~La~~  217 (620)
T PRK14954        178 CQ-RFNFKRIPLDEI-------------QSQLQMICRAEGIQIDADALQLIARK  217 (620)
T ss_pred             ce-EEecCCCCHHHH-------------HHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            95 777777765543             33333322222455788888777643

>PRK05642 DNA replication initiation factor; Validated

Probab=98.31  E-value=8.8e-06  Score=83.95  Aligned_cols=183  Identities=19%  Similarity=0.225  Sum_probs=99.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh--
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD--  423 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~--  423 (720)
                      -+++|+|++|+|||.|++++++.+...    +  .....+++.-..... ..+ .+  .  +.+..+++||+++....  
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~----~--~~v~y~~~~~~~~~~-~~~-~~--~--~~~~d~LiiDDi~~~~~~~  113 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQR----G--EPAVYLPLAELLDRG-PEL-LD--N--LEQYELVCLDDLDVIAGKA  113 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhC----C--CcEEEeeHHHHHhhh-HHH-HH--h--hhhCCEEEEechhhhcCCh
Confidence            578999999999999999998644210    0  111111111000000 000 00  0  11235889999987753  


Q ss_pred             HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCCChHHHH
Q psy17703        424 TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDPQSEQFD  501 (720)
Q Consensus       424 ~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~~~~~~d  501 (720)
                      ..+..|..+++...            ..+..+|-|+|-.+..|.         .+.+.|.|||-  +++.+..+++++..
T Consensus       114 ~~~~~Lf~l~n~~~------------~~g~~ilits~~~p~~l~---------~~~~~L~SRl~~gl~~~l~~~~~e~~~  172 (234)
T PRK05642        114 DWEEALFHLFNRLR------------DSGRRLLLAASKSPRELP---------IKLPDLKSRLTLALVFQMRGLSDEDKL  172 (234)
T ss_pred             HHHHHHHHHHHHHH------------hcCCEEEEeCCCCHHHcC---------ccCccHHHHHhcCeeeecCCCCHHHHH
Confidence            44566777765321            111234444443222221         24588999995  77888887776554


Q ss_pred             HHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCH
Q psy17703        502 ARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEV  581 (720)
Q Consensus       502 ~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~  581 (720)
                      ..+.         .   .+... .-.+++++.+.|....             +-+.|.++.++..-.. +.+.....||.
T Consensus       173 ~il~---------~---ka~~~-~~~l~~ev~~~L~~~~-------------~~d~r~l~~~l~~l~~-~~l~~~~~it~  225 (234)
T PRK05642        173 RALQ---------L---RASRR-GLHLTDEVGHFILTRG-------------TRSMSALFDLLERLDQ-ASLQAQRKLTI  225 (234)
T ss_pred             HHHH---------H---HHHHc-CCCCCHHHHHHHHHhc-------------CCCHHHHHHHHHHHHH-HHHHcCCcCCH
Confidence            3332         1   22221 3568899998887542             2345888776654433 33443345776


Q ss_pred             HhHHHHH
Q psy17703        582 QDVDEAW  588 (720)
Q Consensus       582 ~Dv~~Ai  588 (720)
                      .-+++++
T Consensus       226 ~~~~~~L  232 (234)
T PRK05642        226 PFLKETL  232 (234)
T ss_pred             HHHHHHh
Confidence            6666654

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.31  E-value=3.4e-06  Score=86.12  Aligned_cols=179  Identities=22%  Similarity=0.299  Sum_probs=95.6

Q ss_pred             hhcCCCC--ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccce--------eecCccccceeeecceeeec
Q psy17703        339 LQETPAE--INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAY--------ITKDPETRQMVLQTGALVLA  408 (720)
Q Consensus       339 lQE~pg~--i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~--------~~~~~~~~~~~~~~G~l~la  408 (720)
                      +.+.|+.  -+++|+|++|+|||.|++++++.+-+.    ..+.....+++.        ..++....++  .   -.+.
T Consensus        26 ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~----~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~--~---~~~~   96 (219)
T PF00308_consen   26 IAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ----HPGKRVVYLSAEEFIREFADALRDGEIEEF--K---DRLR   96 (219)
T ss_dssp             HHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH----CTTS-EEEEEHHHHHHHHHHHHHTTSHHHH--H---HHHC
T ss_pred             HHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc----cccccceeecHHHHHHHHHHHHHcccchhh--h---hhhh
Confidence            3333443  479999999999999999998754210    001111111110        0000000000  0   0123


Q ss_pred             CCceeeccccccCChHH--HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703        409 DSGVCCIDEFDKMSDTT--RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF  486 (720)
Q Consensus       409 d~gI~~IDEidkm~~~~--~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF  486 (720)
                      .-.+++||+++.+....  +..|...++...-            ..-.+|.|++-.+..+         ..+.+.|.|||
T Consensus        97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~------------~~k~li~ts~~~P~~l---------~~~~~~L~SRl  155 (219)
T PF00308_consen   97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIE------------SGKQLILTSDRPPSEL---------SGLLPDLRSRL  155 (219)
T ss_dssp             TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHH------------TTSEEEEEESS-TTTT---------TTS-HHHHHHH
T ss_pred             cCCEEEEecchhhcCchHHHHHHHHHHHHHHh------------hCCeEEEEeCCCCccc---------cccChhhhhhH
Confidence            45799999999998765  6777777764321            1123444444333221         13778999999


Q ss_pred             e--eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHH
Q psy17703        487 D--LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLI  564 (720)
Q Consensus       487 d--li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~li  564 (720)
                      .  +++.+..|+++...+.+.+            .|+. -...+++++.+.|...+             +-+.|.|+.++
T Consensus       156 ~~Gl~~~l~~pd~~~r~~il~~------------~a~~-~~~~l~~~v~~~l~~~~-------------~~~~r~L~~~l  209 (219)
T PF00308_consen  156 SWGLVVELQPPDDEDRRRILQK------------KAKE-RGIELPEEVIEYLARRF-------------RRDVRELEGAL  209 (219)
T ss_dssp             HCSEEEEE----HHHHHHHHHH------------HHHH-TT--S-HHHHHHHHHHT-------------TSSHHHHHHHH
T ss_pred             hhcchhhcCCCCHHHHHHHHHH------------HHHH-hCCCCcHHHHHHHHHhh-------------cCCHHHHHHHH
Confidence            8  6778877766544333221            2222 34568999999887653             22458888888


Q ss_pred             HHHHHHHHH
Q psy17703        565 RLSEAHAKM  573 (720)
Q Consensus       565 rla~A~A~l  573 (720)
                      .--.+.+.+
T Consensus       210 ~~l~~~~~~  218 (219)
T PF00308_consen  210 NRLDAYAQL  218 (219)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhc
Confidence            766666554

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=98.29  E-value=7.4e-06  Score=88.56  Aligned_cols=132  Identities=20%  Similarity=0.223  Sum_probs=77.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCc----cccCCcc------ccccccceeec-Cc--------cccceeeecc-eee
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQ----YTSGKGS------SAVGLTAYITK-DP--------ETRQMVLQTG-ALV  406 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~----~~~g~~s------s~~glta~~~~-~~--------~~~~~~~~~G-~l~  406 (720)
                      -+||.||+|+||+++++.+++.+-...    ..+|.=.      ...+.....+. +.        ..++..-... .-.
T Consensus        24 a~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~~  103 (328)
T PRK05707         24 AYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTAQ  103 (328)
T ss_pred             eeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhccc
Confidence            488999999999999999999663211    0011000      00000000000 00        0000000000 001


Q ss_pred             ecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceE-EEecccCCCCCCCCCcccccccCCChhhhcc
Q psy17703        407 LADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTS-ILAAANPCDSQWNTSKTIIDNIRLPHTLLSR  485 (720)
Q Consensus       407 lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~-iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsR  485 (720)
                      .+...|++|||+++|+.+..++|+..||+-             |.++. |+.|.||.              .++++++||
T Consensus       104 ~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP-------------p~~~~fiL~t~~~~--------------~ll~TI~SR  156 (328)
T PRK05707        104 LGGRKVVLIEPAEAMNRNAANALLKSLEEP-------------SGDTVLLLISHQPS--------------RLLPTIKSR  156 (328)
T ss_pred             cCCCeEEEECChhhCCHHHHHHHHHHHhCC-------------CCCeEEEEEECChh--------------hCcHHHHhh
Confidence            234568999999999999999999999973             22233 44444443              489999999


Q ss_pred             ceeEEEecCCChHHHHHHHHh
Q psy17703        486 FDLIFLLLDPQSEQFDARLAR  506 (720)
Q Consensus       486 Fdli~~l~d~~~~~~d~~la~  506 (720)
                      +- .+.+.+++.++....+.+
T Consensus       157 c~-~~~~~~~~~~~~~~~L~~  176 (328)
T PRK05707        157 CQ-QQACPLPSNEESLQWLQQ  176 (328)
T ss_pred             ce-eeeCCCcCHHHHHHHHHH
Confidence            96 577777777766555554

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=98.28  E-value=4.1e-06  Score=94.38  Aligned_cols=187  Identities=19%  Similarity=0.241  Sum_probs=110.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCccc---------------cCCccccccccceeecC-ccccceeeecc-eeeecC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQYT---------------SGKGSSAVGLTAYITKD-PETRQMVLQTG-ALVLAD  409 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~---------------~g~~ss~~glta~~~~~-~~~~~~~~~~G-~l~lad  409 (720)
                      --||.||-|||||+++|.+|+.+....-.               .|...+.+.+.++.... ...++..-+.. +-+.+.
T Consensus        40 AYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~r  119 (515)
T COG2812          40 AYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGR  119 (515)
T ss_pred             hhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCcccc
Confidence            56899999999999999999977433211               11112222222221110 00111100000 111233


Q ss_pred             CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      ..|.+|||.+-++....++|+..+|+---++            ..|+||++|.              ++|+.++||+- .
T Consensus       120 yKVyiIDEvHMLS~~afNALLKTLEEPP~hV------------~FIlATTe~~--------------Kip~TIlSRcq-~  172 (515)
T COG2812         120 YKVYIIDEVHMLSKQAFNALLKTLEEPPSHV------------KFILATTEPQ--------------KIPNTILSRCQ-R  172 (515)
T ss_pred             ceEEEEecHHhhhHHHHHHHhcccccCccCe------------EEEEecCCcC--------------cCchhhhhccc-c
Confidence            5699999999999999999999988754333            4467777765              59999999995 6


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA  569 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A  569 (720)
                      |.+.-.+.++             +.+++.+.-..-.-...+++...+....             ..+.|...+++.-+-+
T Consensus       173 f~fkri~~~~-------------I~~~L~~i~~~E~I~~e~~aL~~ia~~a-------------~Gs~RDalslLDq~i~  226 (515)
T COG2812         173 FDFKRLDLEE-------------IAKHLAAILDKEGINIEEDALSLIARAA-------------EGSLRDALSLLDQAIA  226 (515)
T ss_pred             ccccCCCHHH-------------HHHHHHHHHHhcCCccCHHHHHHHHHHc-------------CCChhhHHHHHHHHHH
Confidence            7776655443             3444444433334456677776665331             1234777777654443


Q ss_pred             HHHHcCCCCCCHHhHHHHHHH
Q psy17703        570 HAKMRYSETVEVQDVDEAWRL  590 (720)
Q Consensus       570 ~A~l~~~~~V~~~Dv~~Ai~l  590 (720)
                      ..    .+.|+.+++...+.+
T Consensus       227 ~~----~~~It~~~v~~~lG~  243 (515)
T COG2812         227 FG----EGEITLESVRDMLGL  243 (515)
T ss_pred             cc----CCcccHHHHHHHhCC
Confidence            32    257787777766443

>TIGR00416 sms DNA repair protein RadA

Probab=98.27  E-value=7e-07  Score=100.58  Aligned_cols=87  Identities=26%  Similarity=0.420  Sum_probs=56.9

Q ss_pred             hheeecccCCceeeeeeccCcccCCccCCCCCCCCcceeeccC-------Ccc----c--h--h-----hhhhhhcCC--
Q psy17703        286 EAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNR-------SHF----T--D--K-----QLVRLQETP--  343 (720)
Q Consensus       286 ~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~~~~~~~~-------s~~----~--d--~-----Q~iklQE~p--  343 (720)
                      +..|+|.+||++...|..+        ||+|+.|++|......       +..    .  .  .     ..++..+.+  
T Consensus         5 ~~~y~C~~Cg~~~~~~~g~--------Cp~C~~w~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri   76 (454)
T TIGR00416         5 KSKFVCQHCGADSPKWQGK--------CPACHAWNTITEERLHRSLGAQKNRRNSGKAGIPQAQKSQTISAIELEEVPRF   76 (454)
T ss_pred             CCeEECCcCCCCCccccEE--------CcCCCCccccchhhcccccccccccccccccccccCccceEhhhccccccCcc
Confidence            4579999999999999876        9999999998763111       010    0  0  1     111111111  


Q ss_pred             ------------C----CccEEEEcCCCCHHHHHHHHHHhhC-C---CCccccCCcc
Q psy17703        344 ------------A----EINILLCGDPGTSKSQLLSYVYDLV-P---RSQYTSGKGS  380 (720)
Q Consensus       344 ------------g----~i~vLL~G~PGtGKS~ll~~va~~~-p---r~~~~~g~~s  380 (720)
                                  |    +--+|+.|+||+|||+|+..++..+ .   +..|.++..+
T Consensus        77 ~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs  133 (454)
T TIGR00416        77 SSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES  133 (454)
T ss_pred             ccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC
Confidence                        2    2368999999999999998886644 2   2356665543

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>TIGR02688 conserved hypothetical protein TIGR02688

Probab=98.25  E-value=7.8e-06  Score=89.43  Aligned_cols=214  Identities=16%  Similarity=0.148  Sum_probs=109.1

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD  423 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~  423 (720)
                      .+.|+++.||||||||.++.++....   ...+|.-.+.+.|......        -..|.  ++.-.+++|||+..++.
T Consensus       208 ~~~Nli~lGp~GTGKThla~~l~~~~---a~~sG~f~T~a~Lf~~L~~--------~~lg~--v~~~DlLI~DEvgylp~  274 (449)
T TIGR02688       208 PNYNLIELGPKGTGKSYIYNNLSPYV---ILISGGTITVAKLFYNIST--------RQIGL--VGRWDVVAFDEVATLKF  274 (449)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHhHHH---HHHcCCcCcHHHHHHHHHH--------HHHhh--hccCCEEEEEcCCCCcC
Confidence            56799999999999999999876431   1223322222222211111        11232  23346899999988553


Q ss_pred             H----HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCC--CCCCCC----cccccccCCChhhhccceeEEEec
Q psy17703        424 T----TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD--SQWNTS----KTIIDNIRLPHTLLSRFDLIFLLL  493 (720)
Q Consensus       424 ~----~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~--g~~~~~----~~~~~~~~l~~aLlsRFdli~~l~  493 (720)
                      +    ..+.|...||.+.++.  ....  ..+.++++.-.|-..  ......    ..+.+.++ ..|+++||...+.=.
T Consensus       275 ~~~~~~v~imK~yMesg~fsR--G~~~--~~a~as~vfvGNi~~~v~~~~~~~~Lf~~lP~~~~-DsAflDRiH~yiPGW  349 (449)
T TIGR02688       275 AKPKELIGILKNYMESGSFTR--GDET--KSSDASFVFLGNVPLTSEHMVKNSDLFSPLPEFMR-DSAFLDRIHGYLPGW  349 (449)
T ss_pred             CchHHHHHHHHHHHHhCceec--ccee--eeeeeEEEEEcccCCcchhhcCcccccccCChhhh-hhHHHHhhhccCCCC
Confidence            3    3567888899998876  3333  334555555555321  111111    11222223 568888885222111


Q ss_pred             CCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHH
Q psy17703        494 DPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKM  573 (720)
Q Consensus       494 d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l  573 (720)
                      ..|. -..+.+..+.  -+.-.|++.+-..++.    .......+.|..+        +-.++.|.-.++.++.-+.-|+
T Consensus       350 eipk-~~~e~~t~~y--Gl~~DylsE~l~~lR~----~~~~~~~~~~~~l--------~~~~~~RD~~aV~kt~SgllKL  414 (449)
T TIGR02688       350 EIPK-IRKEMFSNGY--GFVVDYFAEALRELRE----REYADIVDRHFSL--------SPNLNTRDVIAVKKTFSGLMKI  414 (449)
T ss_pred             cCcc-CCHHHcccCC--cchHHHHHHHHHHHHh----hHHHHhhhhheec--------CCCcchhhHHHHHHHHHHHHHH
Confidence            1110 0111222221  1233333333222211    0111111111111        1224569999999988888887


Q ss_pred             -cCCCCCCHHhHHHHHHH
Q psy17703        574 -RYSETVEVQDVDEAWRL  590 (720)
Q Consensus       574 -~~~~~V~~~Dv~~Ai~l  590 (720)
                       --...++.+|++++++.
T Consensus       415 L~P~~~~~~ee~~~~l~~  432 (449)
T TIGR02688       415 LFPHGTITKEEFTECLEP  432 (449)
T ss_pred             hCCCCCCCHHHHHHHHHH
Confidence             34567889999887664

Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=98.25  E-value=7.2e-07  Score=84.22  Aligned_cols=110  Identities=19%  Similarity=0.292  Sum_probs=71.3

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD  423 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~  423 (720)
                      .+.+|||.|+|||||+.+|++++....+..-..- ......+.               ...+..+.+|+++|+|++.+++
T Consensus        20 ~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~-~~~~~~~~---------------~~~l~~a~~gtL~l~~i~~L~~   83 (138)
T PF14532_consen   20 SSSPVLITGEPGTGKSLLARALHRYSGRANGPFI-VIDCASLP---------------AELLEQAKGGTLYLKNIDRLSP   83 (138)
T ss_dssp             SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CC-CCCHHCTC---------------HHHHHHCTTSEEEEECGCCS-H
T ss_pred             CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeE-EechhhCc---------------HHHHHHcCCCEEEECChHHCCH
Confidence            5789999999999999999999987654210000 00000000               1111224799999999999999


Q ss_pred             HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703        424 TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD  487 (720)
Q Consensus       424 ~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd  487 (720)
                      +.|..|.++++...            +.++.+|+++....      ....+.-.+.+.|+.||.
T Consensus        84 ~~Q~~L~~~l~~~~------------~~~~RlI~ss~~~l------~~l~~~~~~~~~L~~~l~  129 (138)
T PF14532_consen   84 EAQRRLLDLLKRQE------------RSNVRLIASSSQDL------EELVEEGRFSPDLYYRLS  129 (138)
T ss_dssp             HHHHHHHHHHHHCT------------TTTSEEEEEECC-C------CCHHHHSTHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhcC------------CCCeEEEEEeCCCH------HHHhhccchhHHHHHHhC
Confidence            99999999997621            24567777776433      222344467788888887

>KOG0744|consensus

Probab=98.24  E-value=2.7e-06  Score=88.45  Aligned_cols=131  Identities=23%  Similarity=0.319  Sum_probs=80.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccc--cccccceeecCccccceeeecceeee----------cCCc-
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSS--AVGLTAYITKDPETRQMVLQTGALVL----------ADSG-  411 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss--~~glta~~~~~~~~~~~~~~~G~l~l----------ad~g-  411 (720)
                      +--|||+||||||||+|.+++|..+.  +.+.++..-  .+.+.    .......|.-|.|.++.          .+.| 
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLS--IR~~~~y~~~~liEin----shsLFSKWFsESgKlV~kmF~kI~ELv~d~~~  250 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLS--IRTNDRYYKGQLIEIN----SHSLFSKWFSESGKLVAKMFQKIQELVEDRGN  250 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhhe--eeecCccccceEEEEe----hhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCc
Confidence            45699999999999999999998662  111111110  01111    01122345556565431          2334 


Q ss_pred             --eeeccccccCChH---------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCccccc
Q psy17703        412 --VCCIDEFDKMSDT---------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIID  474 (720)
Q Consensus       412 --I~~IDEidkm~~~---------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~  474 (720)
                        .++|||...+...               ..++++.-|++-+           --.++.++||+|-..           
T Consensus       251 lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK-----------~~~NvliL~TSNl~~-----------  308 (423)
T KOG0744|consen  251 LVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK-----------RYPNVLILATSNLTD-----------  308 (423)
T ss_pred             EEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-----------cCCCEEEEeccchHH-----------
Confidence              3579999765321               1334554444321           124689999999544           


Q ss_pred             ccCCChhhhccceeEEEecCCChHHHHHHHH
Q psy17703        475 NIRLPHTLLSRFDLIFLLLDPQSEQFDARLA  505 (720)
Q Consensus       475 ~~~l~~aLlsRFdli~~l~d~~~~~~d~~la  505 (720)
                        .++.|+.+|-|+.+.+.+|..+...+++.
T Consensus       309 --siD~AfVDRADi~~yVG~Pt~~ai~~Ilk  337 (423)
T KOG0744|consen  309 --SIDVAFVDRADIVFYVGPPTAEAIYEILK  337 (423)
T ss_pred             --HHHHHhhhHhhheeecCCccHHHHHHHHH
Confidence              47899999999999999998876655543

>KOG0729|consensus

Probab=98.24  E-value=1.3e-06  Score=88.24  Aligned_cols=123  Identities=23%  Similarity=0.244  Sum_probs=72.7

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCC-ccccCCc--cccccccceeecCccccceeeecceeeec-CCceeeccccccC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRS-QYTSGKG--SSAVGLTAYITKDPETRQMVLQTGALVLA-DSGVCCIDEFDKM  421 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~-~~~~g~~--ss~~glta~~~~~~~~~~~~~~~G~l~la-d~gI~~IDEidkm  421 (720)
                      -.|||+||||||||..+|++++..... +..-|.+  ...+|..+-+++.-+.         +... ...|+|+||+|.+
T Consensus       212 kgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~---------martkkaciiffdeidai  282 (435)
T KOG0729|consen  212 KGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFE---------MARTKKACIIFFDEIDAI  282 (435)
T ss_pred             CceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHH---------HhcccceEEEEeeccccc
Confidence            368999999999999999999865321 1111111  1112222222221110         0011 2368999999876


Q ss_pred             C-----------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--ccee
Q psy17703        422 S-----------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDL  488 (720)
Q Consensus       422 ~-----------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdl  488 (720)
                      .           .+.|-.++|.+.|-.-.-        -..+.-++.|+|...             .|.|+|++  |.|-
T Consensus       283 ggarfddg~ggdnevqrtmleli~qldgfd--------prgnikvlmatnrpd-------------tldpallrpgrldr  341 (435)
T KOG0729|consen  283 GGARFDDGAGGDNEVQRTMLELINQLDGFD--------PRGNIKVLMATNRPD-------------TLDPALLRPGRLDR  341 (435)
T ss_pred             cCccccCCCCCcHHHHHHHHHHHHhccCCC--------CCCCeEEEeecCCCC-------------CcCHhhcCCccccc
Confidence            3           345777888876532111        124567888898654             48888887  8886


Q ss_pred             EEEecCCChH
Q psy17703        489 IFLLLDPQSE  498 (720)
Q Consensus       489 i~~l~d~~~~  498 (720)
                      .+.+.-|.-+
T Consensus       342 kvef~lpdle  351 (435)
T KOG0729|consen  342 KVEFGLPDLE  351 (435)
T ss_pred             ceeccCCccc
Confidence            6666555433

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.23  E-value=2.2e-05  Score=91.67  Aligned_cols=151  Identities=19%  Similarity=0.240  Sum_probs=84.7

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCCCCccc-cC----C-----------ccccccccceeecC-ccccceeeecc-eeeecC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVPRSQYT-SG----K-----------GSSAVGLTAYITKD-PETRQMVLQTG-ALVLAD  409 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g----~-----------~ss~~glta~~~~~-~~~~~~~~~~G-~l~lad  409 (720)
                      +||+||+|+|||++++.+++.+...... .+    .           ......+.+.-... ........+.- .-..++
T Consensus        42 yLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~  121 (614)
T PRK14971         42 YLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGK  121 (614)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCC
Confidence            7899999999999999999976421110 00    0           00000000000000 00000000000 012345


Q ss_pred             CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      ..|++|||++.|+.+.+++|+..||+-             |..+.+|.+++..             ..+.++|+||+. +
T Consensus       122 ~KVvIIdea~~Ls~~a~naLLK~LEep-------------p~~tifIL~tt~~-------------~kIl~tI~SRc~-i  174 (614)
T PRK14971        122 YKIYIIDEVHMLSQAAFNAFLKTLEEP-------------PSYAIFILATTEK-------------HKILPTILSRCQ-I  174 (614)
T ss_pred             cEEEEEECcccCCHHHHHHHHHHHhCC-------------CCCeEEEEEeCCc-------------hhchHHHHhhhh-e
Confidence            679999999999999999999999862             2234444444411             158899999996 6


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQ  538 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~  538 (720)
                      +.+..++.++..             +++.+.-+...-.+++++.+.|+.
T Consensus       175 v~f~~ls~~ei~-------------~~L~~ia~~egi~i~~~al~~La~  210 (614)
T PRK14971        175 FDFNRIQVADIV-------------NHLQYVASKEGITAEPEALNVIAQ  210 (614)
T ss_pred             eecCCCCHHHHH-------------HHHHHHHHHcCCCCCHHHHHHHHH
Confidence            777777665443             333332222244566777666653

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.22  E-value=9.7e-07  Score=81.38  Aligned_cols=131  Identities=22%  Similarity=0.295  Sum_probs=68.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCccccccccc----eeecC--ccccceeeecceeeecC---Cc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLTA----YITKD--PETRQMVLQTGALVLAD---SG  411 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glta----~~~~~--~~~~~~~~~~G~l~lad---~g  411 (720)
                      ..+++|+||||||||++++.++..+...    .+.+...........    ....+  ...+....+ ..+..+.   ..
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   80 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLR-LALALARKLKPD   80 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHH-HHHHHHHhcCCC
Confidence            3589999999999999999999987653    222211111000000    00000  000000011 1112222   38


Q ss_pred             eeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEE
Q psy17703        412 VCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFL  491 (720)
Q Consensus       412 I~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~  491 (720)
                      ++++||++.+..............     ..............+++++|+            .....+..+..|++..+.
T Consensus        81 viiiDei~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~------------~~~~~~~~~~~~~~~~~~  143 (148)
T smart00382       81 VLILDEITSLLDAEQEALLLLLEE-----LRLLLLLKSEKNLTVILTTND------------EKDLGPALLRRRFDRRIV  143 (148)
T ss_pred             EEEEECCcccCCHHHHHHHHhhhh-----hHHHHHHHhcCCCEEEEEeCC------------CccCchhhhhhccceEEE
Confidence            999999999988776554332110     000001112345789999996            111345666668886665


Q ss_pred             ec
Q psy17703        492 LL  493 (720)
Q Consensus       492 l~  493 (720)
                      +.
T Consensus       144 ~~  145 (148)
T smart00382      144 LL  145 (148)
T ss_pred             ec
Confidence            54

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.22  E-value=2.7e-06  Score=95.71  Aligned_cols=195  Identities=16%  Similarity=0.183  Sum_probs=103.5

Q ss_pred             cCCCC-ccEEEEcCCCCHHHHHHHHHHhhCC------CCccccCCccccccccceeecCccccceeeecceeeecCCcee
Q psy17703        341 ETPAE-INILLCGDPGTSKSQLLSYVYDLVP------RSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVC  413 (720)
Q Consensus       341 E~pg~-i~vLL~G~PGtGKS~ll~~va~~~p------r~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~  413 (720)
                      +.|+. -+++|+|+||+|||.|++++++.+.      +..|.+..... ..+..+. +......+..   . ......++
T Consensus       125 ~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~-~~~~~~~-~~~~~~~f~~---~-~~~~~dvL  198 (440)
T PRK14088        125 KNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL-NDLVDSM-KEGKLNEFRE---K-YRKKVDVL  198 (440)
T ss_pred             hCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH-HHHHHHH-hcccHHHHHH---H-HHhcCCEE
Confidence            33443 3799999999999999999998642      11222211100 0000000 0000000000   0 00135689


Q ss_pred             eccccccCCh--HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eE
Q psy17703        414 CIDEFDKMSD--TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LI  489 (720)
Q Consensus       414 ~IDEidkm~~--~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li  489 (720)
                      +|||++.+..  ..+..|...+....-    .|        ..+|.++|-.+..+         -.+.+.+.|||.  ++
T Consensus       199 lIDDi~~l~~~~~~q~elf~~~n~l~~----~~--------k~iIitsd~~p~~l---------~~l~~rL~SR~~~gl~  257 (440)
T PRK14088        199 LIDDVQFLIGKTGVQTELFHTFNELHD----SG--------KQIVICSDREPQKL---------SEFQDRLVSRFQMGLV  257 (440)
T ss_pred             EEechhhhcCcHHHHHHHHHHHHHHHH----cC--------CeEEEECCCCHHHH---------HHHHHHHhhHHhcCce
Confidence            9999997743  234455555532110    11        12333443221111         135688999996  56


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA  569 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A  569 (720)
                      +.+..|..+.+...+.         +.   +.. -.-.+++++.+.|.+.+             ..+.|.|+.++.--.+
T Consensus       258 v~i~~pd~e~r~~IL~---------~~---~~~-~~~~l~~ev~~~Ia~~~-------------~~~~R~L~g~l~~l~~  311 (440)
T PRK14088        258 AKLEPPDEETRKKIAR---------KM---LEI-EHGELPEEVLNFVAENV-------------DDNLRRLRGAIIKLLV  311 (440)
T ss_pred             EeeCCCCHHHHHHHHH---------HH---HHh-cCCCCCHHHHHHHHhcc-------------ccCHHHHHHHHHHHHH
Confidence            6676666554433332         11   111 24568899988887543             2345889887765566


Q ss_pred             HHHHcCCCCCCHHhHHHHHH
Q psy17703        570 HAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       570 ~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      .|.+..+ .+|.+.+.+++.
T Consensus       312 ~~~~~~~-~it~~~a~~~L~  330 (440)
T PRK14088        312 YKETTGE-EVDLKEAILLLK  330 (440)
T ss_pred             HHHHhCC-CCCHHHHHHHHH
Confidence            7777654 577777777665

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=9.3e-06  Score=88.93  Aligned_cols=204  Identities=17%  Similarity=0.168  Sum_probs=122.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCC------CccccCCcccc----ccccce-eecCccccceeee-----cceee-ec
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPR------SQYTSGKGSSA----VGLTAY-ITKDPETRQMVLQ-----TGALV-LA  408 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr------~~~~~g~~ss~----~glta~-~~~~~~~~~~~~~-----~G~l~-la  408 (720)
                      .|++++|+||||||..++++++.+-.      .+|..+..-..    ....+. +..-+.+|....+     ...+. ..
T Consensus        43 ~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~  122 (366)
T COG1474          43 SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKG  122 (366)
T ss_pred             ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcC
Confidence            36999999999999999999986622      13322221100    000000 0011111110000     00000 11


Q ss_pred             CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703        409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL  488 (720)
Q Consensus       409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl  488 (720)
                      ..-|+.+||+|.|.......|+.......        .  ...++.+++.+|...          ....|.+.+.|||-.
T Consensus       123 ~~~IvvLDEid~L~~~~~~~LY~L~r~~~--------~--~~~~v~vi~i~n~~~----------~~~~ld~rv~s~l~~  182 (366)
T COG1474         123 KTVIVILDEVDALVDKDGEVLYSLLRAPG--------E--NKVKVSIIAVSNDDK----------FLDYLDPRVKSSLGP  182 (366)
T ss_pred             CeEEEEEcchhhhccccchHHHHHHhhcc--------c--cceeEEEEEEeccHH----------HHHHhhhhhhhccCc
Confidence            22378999999998887666776653221        1  156789999999543          122577888888873


Q ss_pred             E-EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHH
Q psy17703        489 I-FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS  567 (720)
Q Consensus       489 i-~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla  567 (720)
                      . +.+++...++....|.         .+...+.  ....+++++.+.+......-          ....|....++|.|
T Consensus       183 ~~I~F~pY~a~el~~Il~---------~R~~~~~--~~~~~~~~vl~lia~~~a~~----------~GDAR~aidilr~A  241 (366)
T COG1474         183 SEIVFPPYTAEELYDILR---------ERVEEGF--SAGVIDDDVLKLIAALVAAE----------SGDARKAIDILRRA  241 (366)
T ss_pred             ceeeeCCCCHHHHHHHHH---------HHHHhhc--cCCCcCccHHHHHHHHHHHc----------CccHHHHHHHHHHH
Confidence            3 4555555555544433         3333322  25577888887776554311          11469999999999


Q ss_pred             HHHHHHcCCCCCCHHhHHHHHHH
Q psy17703        568 EAHAKMRYSETVEVQDVDEAWRL  590 (720)
Q Consensus       568 ~A~A~l~~~~~V~~~Dv~~Ai~l  590 (720)
                      --.|.-+++..++.+|+..|..-
T Consensus       242 ~eiAe~~~~~~v~~~~v~~a~~~  264 (366)
T COG1474         242 GEIAEREGSRKVSEDHVREAQEE  264 (366)
T ss_pred             HHHHHhhCCCCcCHHHHHHHHHH
Confidence            99999999999999999999543

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=98.17  E-value=1.4e-06  Score=95.47  Aligned_cols=83  Identities=25%  Similarity=0.422  Sum_probs=54.5

Q ss_pred             eecccCCceeeeeeccCcccCCccCCCCCCCCcceeeccCC----c------cchh-----hhhhhhcCC----------
Q psy17703        289 FRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNRS----H------FTDK-----QLVRLQETP----------  343 (720)
Q Consensus       289 f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~~~~~~~~s----~------~~d~-----Q~iklQE~p----------  343 (720)
                      |+|.+||++...|.++        ||+|+.|++|.......    .      ....     ..+...+.+          
T Consensus         1 ~~c~~cg~~~~~~~g~--------cp~c~~w~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~TGi~eLD   72 (372)
T cd01121           1 YVCSECGYVSPKWLGK--------CPECGEWNTLVEEIEPSSSSGSGGRSSGGSASKVIPLSDIEAEEEERIPTGIEELD   72 (372)
T ss_pred             CCCCCCCCCCCCccEE--------CcCCCCceeeeehhccccccccccccccccCCCceEhhhccccccCccccCCHHHH
Confidence            7999999999999876        99999999987632111    0      0001     112211111          


Q ss_pred             ----C----CccEEEEcCCCCHHHHHHHHHHhhCC----CCccccCCc
Q psy17703        344 ----A----EINILLCGDPGTSKSQLLSYVYDLVP----RSQYTSGKG  379 (720)
Q Consensus       344 ----g----~i~vLL~G~PGtGKS~ll~~va~~~p----r~~~~~g~~  379 (720)
                          |    .--+|+.|+||+|||+|+..++....    +..|.++..
T Consensus        73 ~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE  120 (372)
T cd01121          73 RVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE  120 (372)
T ss_pred             HhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence                2    23689999999999999988876442    334555543

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=98.15  E-value=4.6e-06  Score=82.98  Aligned_cols=126  Identities=17%  Similarity=0.199  Sum_probs=72.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcc------------ccccccceeecCc------cccceeeeccee-ee
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGS------------SAVGLTAYITKDP------ETRQMVLQTGAL-VL  407 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~s------------s~~glta~~~~~~------~~~~~~~~~G~l-~l  407 (720)
                      .+||+||||+|||++++.+++.+.......+...            ....+. .+..+.      ...+..-..... ..
T Consensus        16 ~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~-~~~~~~~~~~~~~i~~i~~~~~~~~~~   94 (188)
T TIGR00678        16 AYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLH-RLEPEGQSIKVDQVRELVEFLSRTPQE   94 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEE-EeccccCcCCHHHHHHHHHHHccCccc
Confidence            4899999999999999999886632100001000            000000 000000      000000000000 12


Q ss_pred             cCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703        408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD  487 (720)
Q Consensus       408 ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd  487 (720)
                      ++..+++|||+++|+.+.++.|+..||+.             +..+.+|.++|..             ..+.+++.+|+.
T Consensus        95 ~~~kviiide~~~l~~~~~~~Ll~~le~~-------------~~~~~~il~~~~~-------------~~l~~~i~sr~~  148 (188)
T TIGR00678        95 SGRRVVIIEDAERMNEAAANALLKTLEEP-------------PPNTLFILITPSP-------------EKLLPTIRSRCQ  148 (188)
T ss_pred             CCeEEEEEechhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECCh-------------HhChHHHHhhcE
Confidence            34569999999999999999999999753             2234455445421             147899999995


Q ss_pred             eEEEecCCChHHH
Q psy17703        488 LIFLLLDPQSEQF  500 (720)
Q Consensus       488 li~~l~d~~~~~~  500 (720)
                       ++.+.++..++.
T Consensus       149 -~~~~~~~~~~~~  160 (188)
T TIGR00678       149 -VLPFPPLSEEAL  160 (188)
T ss_pred             -EeeCCCCCHHHH
Confidence             677777766553

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=98.13  E-value=1.2e-05  Score=82.06  Aligned_cols=141  Identities=22%  Similarity=0.233  Sum_probs=78.1

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeeccee-eecCCceeecccccc-CC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGAL-VLADSGVCCIDEFDK-MS  422 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l-~lad~gI~~IDEidk-m~  422 (720)
                      -.|+||+|+.|||||++++++......    .|       +-...+..........--..+ .....-|+|+|++.- ..
T Consensus        52 annvLL~G~rGtGKSSlVkall~~y~~----~G-------LRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~  120 (249)
T PF05673_consen   52 ANNVLLWGARGTGKSSLVKALLNEYAD----QG-------LRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDDLSFEEG  120 (249)
T ss_pred             CcceEEecCCCCCHHHHHHHHHHHHhh----cC-------ceEEEECHHHhccHHHHHHHHhcCCCCEEEEecCCCCCCC
Confidence            469999999999999999999875421    01       111100000000000000000 012356899999742 23


Q ss_pred             hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCC---CCCCCCCcc-------cccccCCChhhhccceeEEEe
Q psy17703        423 DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC---DSQWNTSKT-------IIDNIRLPHTLLSRFDLIFLL  492 (720)
Q Consensus       423 ~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~---~g~~~~~~~-------~~~~~~l~~aLlsRFdli~~l  492 (720)
                      +..-..|..+||         |.....|.++.+.||+|..   ...|....+       ..+.++=.-+|-+||-|.+.+
T Consensus       121 d~~yk~LKs~Le---------Ggle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F  191 (249)
T PF05673_consen  121 DTEYKALKSVLE---------GGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSF  191 (249)
T ss_pred             cHHHHHHHHHhc---------CccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEe
Confidence            333446666664         4445668999999999953   222222211       111111123788899999999


Q ss_pred             cCCChHHHHHHHH
Q psy17703        493 LDPQSEQFDARLA  505 (720)
Q Consensus       493 ~d~~~~~~d~~la  505 (720)
                      .+++.+++-.++.
T Consensus       192 ~~~~q~~YL~IV~  204 (249)
T PF05673_consen  192 YPPDQEEYLAIVR  204 (249)
T ss_pred             cCCCHHHHHHHHH
Confidence            9888776654433

>PHA01747 putative ATP-dependent protease

Probab=98.07  E-value=1.7e-05  Score=84.50  Aligned_cols=166  Identities=22%  Similarity=0.268  Sum_probs=99.7

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC-
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS-  422 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~-  422 (720)
                      .+.|++=.||.|||||.+.+-+.+..|..+  +|...+.+-|..    +..++    ..|.+.+  -.++++||+..+. 
T Consensus       189 ~NyNliELgPRGTGKS~~f~eis~fsp~~i--SGG~~TvA~LFy----N~~t~----~~GLVg~--~D~VaFDEVa~i~f  256 (425)
T PHA01747        189 RPVHIIELSNRGTGKTTTFVILQELFNFRY--YTEPPTYANLVY----DAKTN----ALGLVFL--SNGLIFDEIQTWKD  256 (425)
T ss_pred             CCeeEEEecCCCCChhhHHHHhhhcCCcee--eCCCCchHHheE----ecCCC----ceeEEee--ccEEEEEccccccC
Confidence            468999999999999999999888788765  333333333322    22222    3455443  3568899998876 


Q ss_pred             ---hHHHHHHHHHHHhceEeeeccCeEE--eecCceEEEecccCCCCC---CCCC---cc-ccc--cc-CCChhhhccce
Q psy17703        423 ---DTTRSILHEVMEQQTLSIAKAGIIC--QLNARTSILAAANPCDSQ---WNTS---KT-IID--NI-RLPHTLLSRFD  487 (720)
Q Consensus       423 ---~~~~~~L~e~mE~~~vsi~k~g~~~--~l~a~~~iiaaaNp~~g~---~~~~---~~-~~~--~~-~l~~aLlsRFd  487 (720)
                         ++....|...||.+.++..+.....  +..+.++++.+.|+..-.   |...   +. +.+  -+ .+.+|||+||.
T Consensus       257 ~~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~asiVf~GNin~~~l~~~~~~~~l~~~Lp~~~~~r~~~sA~LDRIh  336 (425)
T PHA01747        257 SNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNPDSSTLDTYQTPNYIKNYLVSYELFQSLTKAILDRIA  336 (425)
T ss_pred             CCHHHHHHHHHHHhhcceeecCCCCcccchhhccceeEEEecCCCCccccccccchhHHHhcchhhhhcccchHHhhhhh
Confidence               3456678888999999876543333  677889999999976322   2110   01 111  01 13789999998


Q ss_pred             eEEEecCCChHHHHHHHH-hhcchhHHHHHHHHHHhh
Q psy17703        488 LIFLLLDPQSEQFDARLA-RHLDITVLRDYIAYAQEH  523 (720)
Q Consensus       488 li~~l~d~~~~~~d~~la-~~i~~~~l~~~i~~ar~~  523 (720)
                      ++-.-.+...  .+..+. .-+-...||.+|.+.+++
T Consensus       337 i~g~~~pkIs--~d~~~sG~vL~~tilr~~i~~~q~~  371 (425)
T PHA01747        337 IIIVNEKKIT--YDDIISGRVLYPTILRGLISLVQSK  371 (425)
T ss_pred             hcccccCcCC--HHHhcccceeHHHHHHHHHHHHHHH
Confidence            3322111111  121221 122455677777766653

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=98.06  E-value=0.0002  Score=77.75  Aligned_cols=70  Identities=23%  Similarity=0.314  Sum_probs=51.5

Q ss_pred             cCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecc-cCCCCCCCCCcccccccCCChhhhccc
Q psy17703        408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAA-NPCDSQWNTSKTIIDNIRLPHTLLSRF  486 (720)
Q Consensus       408 ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaa-Np~~g~~~~~~~~~~~~~l~~aLlsRF  486 (720)
                      ++..|++|||+++|+.+.+++|+..||+-             |..+.+|.++ |+.              ++.+++.||+
T Consensus       109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEP-------------p~~~~~Il~t~~~~--------------~ll~TIrSRc  161 (329)
T PRK08058        109 SNKKVYIIEHADKMTASAANSLLKFLEEP-------------SGGTTAILLTENKH--------------QILPTILSRC  161 (329)
T ss_pred             cCceEEEeehHhhhCHHHHHHHHHHhcCC-------------CCCceEEEEeCChH--------------hCcHHHHhhc
Confidence            45679999999999999999999999863             2233344344 332              4889999999


Q ss_pred             eeEEEecCCChHHHHHHHH
Q psy17703        487 DLIFLLLDPQSEQFDARLA  505 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la  505 (720)
                      - ++.+.+++.++....+.
T Consensus       162 ~-~i~~~~~~~~~~~~~L~  179 (329)
T PRK08058        162 Q-VVEFRPLPPESLIQRLQ  179 (329)
T ss_pred             e-eeeCCCCCHHHHHHHHH
Confidence            5 77787777776655554

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=98.05  E-value=3.3e-05  Score=84.77  Aligned_cols=207  Identities=18%  Similarity=0.228  Sum_probs=118.1

Q ss_pred             cchhhhhhhhcCCCC--ccEEEEcCCCCHHHHHHHHHHhhC----C--CCccccCCccccccccceeecCccccceeeec
Q psy17703        331 FTDKQLVRLQETPAE--INILLCGDPGTSKSQLLSYVYDLV----P--RSQYTSGKGSSAVGLTAYITKDPETRQMVLQT  402 (720)
Q Consensus       331 ~~d~Q~iklQE~pg~--i~vLL~G~PGtGKS~ll~~va~~~----p--r~~~~~g~~ss~~glta~~~~~~~~~~~~~~~  402 (720)
                      +...-...+++.||.  -+++|+|++|.|||.|++++...+    |  +.+|.+......--..+  .++....++.   
T Consensus        97 ~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a--~~~~~~~~Fk---  171 (408)
T COG0593          97 LAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKA--LRDNEMEKFK---  171 (408)
T ss_pred             HHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHH--HHhhhHHHHH---
Confidence            333444566777764  599999999999999999998855    2  11222111000000000  0110000000   


Q ss_pred             ceeeecCCceeeccccccCChH--HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCCh
Q psy17703        403 GALVLADSGVCCIDEFDKMSDT--TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPH  480 (720)
Q Consensus       403 G~l~lad~gI~~IDEidkm~~~--~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~  480 (720)
                       . .. +-.+++||+++.+...  .+..+......-.    ..       .+ +|+-|+...+..+.         .+.+
T Consensus       172 -~-~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~----~~-------~k-qIvltsdr~P~~l~---------~~~~  227 (408)
T COG0593         172 -E-KY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALL----EN-------GK-QIVLTSDRPPKELN---------GLED  227 (408)
T ss_pred             -H-hh-ccCeeeechHhHhcCChhHHHHHHHHHHHHH----hc-------CC-EEEEEcCCCchhhc---------cccH
Confidence             0 01 3468999999887654  2444444432110    01       11 44555543332222         3668


Q ss_pred             hhhccce--eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHH
Q psy17703        481 TLLSRFD--LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPR  558 (720)
Q Consensus       481 aLlsRFd--li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R  558 (720)
                      .|.|||.  +++.+.+|.++..-..|.         +   .+ +.-...+++++.+.++...             .-+.|
T Consensus       228 rL~SR~~~Gl~~~I~~Pd~e~r~aiL~---------k---ka-~~~~~~i~~ev~~~la~~~-------------~~nvR  281 (408)
T COG0593         228 RLRSRLEWGLVVEIEPPDDETRLAILR---------K---KA-EDRGIEIPDEVLEFLAKRL-------------DRNVR  281 (408)
T ss_pred             HHHHHHhceeEEeeCCCCHHHHHHHHH---------H---HH-HhcCCCCCHHHHHHHHHHh-------------hccHH
Confidence            9999999  677777777665433333         2   12 2236678999998887543             22348


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHH
Q psy17703        559 QLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHRE  593 (720)
Q Consensus       559 ~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~  593 (720)
                      .|+..+.-.-+.|....+ .+|.+-+.++++.+..
T Consensus       282 eLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~  315 (408)
T COG0593         282 ELEGALNRLDAFALFTKR-AITIDLVKEILKDLLR  315 (408)
T ss_pred             HHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhc
Confidence            898888766677777766 7888888888775443

>KOG0735|consensus

Probab=98.03  E-value=8.1e-06  Score=92.50  Aligned_cols=123  Identities=26%  Similarity=0.303  Sum_probs=70.7

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcccc----ccccceeecCccccceeeecceeeecCCceeecccccc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSA----VGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK  420 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~----~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk  420 (720)
                      .-.|||+||||||||.|+.+++...+-. +.+-+|...    +|-.--.+++-.     .++.   .|...|+|+||||.
T Consensus       701 ~~giLLyGppGcGKT~la~a~a~~~~~~-fisvKGPElL~KyIGaSEq~vR~lF-----~rA~---~a~PCiLFFDEfdS  771 (952)
T KOG0735|consen  701 RTGILLYGPPGCGKTLLASAIASNSNLR-FISVKGPELLSKYIGASEQNVRDLF-----ERAQ---SAKPCILFFDEFDS  771 (952)
T ss_pred             ccceEEECCCCCcHHHHHHHHHhhCCee-EEEecCHHHHHHHhcccHHHHHHHH-----HHhh---ccCCeEEEeccccc
Confidence            4589999999999999999999866532 222222111    111101111111     1111   24568999999999


Q ss_pred             CChH-----------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cce
Q psy17703        421 MSDT-----------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFD  487 (720)
Q Consensus       421 m~~~-----------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFd  487 (720)
                      +.+.           .-+.|+.-|+         |... + ..+.|+||+..++             -++||||+  |+|
T Consensus       772 iAPkRGhDsTGVTDRVVNQlLTelD---------G~Eg-l-~GV~i~aaTsRpd-------------liDpALLRpGRlD  827 (952)
T KOG0735|consen  772 IAPKRGHDSTGVTDRVVNQLLTELD---------GAEG-L-DGVYILAATSRPD-------------LIDPALLRPGRLD  827 (952)
T ss_pred             cCcccCCCCCCchHHHHHHHHHhhc---------cccc-c-ceEEEEEecCCcc-------------ccCHhhcCCCccc
Confidence            8763           2344555553         2211 2 2356777765443             37899998  999


Q ss_pred             eEEEecCCChHHH
Q psy17703        488 LIFLLLDPQSEQF  500 (720)
Q Consensus       488 li~~l~d~~~~~~  500 (720)
                      -.+....|...++
T Consensus       828 ~~v~C~~P~~~eR  840 (952)
T KOG0735|consen  828 KLVYCPLPDEPER  840 (952)
T ss_pred             eeeeCCCCCcHHH
Confidence            5555554544443

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=98.01  E-value=1.3e-05  Score=86.37  Aligned_cols=124  Identities=19%  Similarity=0.192  Sum_probs=74.6

Q ss_pred             Ccc-EEEEcCCCCHHHHHHHHHHhhCCCCccc---------------cCCccccccccceeecCcc-cccee---eecce
Q psy17703        345 EIN-ILLCGDPGTSKSQLLSYVYDLVPRSQYT---------------SGKGSSAVGLTAYITKDPE-TRQMV---LQTGA  404 (720)
Q Consensus       345 ~i~-vLL~G~PGtGKS~ll~~va~~~pr~~~~---------------~g~~ss~~glta~~~~~~~-~~~~~---~~~G~  404 (720)
                      -.| +||+||||+|||+++.++++.+......               .|.......+++...+... ..+..   .+...
T Consensus        23 ~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~  102 (325)
T COG0470          23 LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLS  102 (325)
T ss_pred             CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhc
Confidence            357 9999999999999999999966421110               0111222222222211110 00000   00000


Q ss_pred             ee--ecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhh
Q psy17703        405 LV--LADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTL  482 (720)
Q Consensus       405 l~--lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aL  482 (720)
                      ..  ....-+++|||+|.|+.+.+++|+..||+.             +.++.++-++|-..             .+.+++
T Consensus       103 ~~~~~~~~kviiidead~mt~~A~nallk~lEep-------------~~~~~~il~~n~~~-------------~il~tI  156 (325)
T COG0470         103 ESPLEGGYKVVIIDEADKLTEDAANALLKTLEEP-------------PKNTRFILITNDPS-------------KILPTI  156 (325)
T ss_pred             cCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccC-------------CCCeEEEEEcCChh-------------hccchh
Confidence            00  123468999999999999999999999864             34566777777221             477799


Q ss_pred             hccceeEEEecCC
Q psy17703        483 LSRFDLIFLLLDP  495 (720)
Q Consensus       483 lsRFdli~~l~d~  495 (720)
                      .||+- ++.+.++
T Consensus       157 ~SRc~-~i~f~~~  168 (325)
T COG0470         157 RSRCQ-RIRFKPP  168 (325)
T ss_pred             hhcce-eeecCCc
Confidence            99995 5666553

>KOG0651|consensus

Probab=97.99  E-value=4.4e-06  Score=86.55  Aligned_cols=119  Identities=24%  Similarity=0.232  Sum_probs=72.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCC---ccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRS---QYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~---~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      .-++|+||||||||.++++|+..+.-.   +..+...+..+|..+-..++.+.......        ..|+|+||+|...
T Consensus       167 kg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~--------pciifmdeiDAig  238 (388)
T KOG0651|consen  167 KGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVI--------PCIIFMDEIDAIG  238 (388)
T ss_pred             ceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhC--------ceEEeehhhhhhc
Confidence            357999999999999999999977432   22223344445555544444322111111        3789999998742


Q ss_pred             -----------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeE
Q psy17703        423 -----------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLI  489 (720)
Q Consensus       423 -----------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli  489 (720)
                                 ...|..|.+.+.|-        -...-..++-+|.|+|...             -|.|||++  |.|-.
T Consensus       239 GRr~se~Ts~dreiqrTLMeLlnqm--------dgfd~l~rVk~ImatNrpd-------------tLdpaLlRpGRldrk  297 (388)
T KOG0651|consen  239 GRRFSEGTSSDREIQRTLMELLNQM--------DGFDTLHRVKTIMATNRPD-------------TLDPALLRPGRLDRK  297 (388)
T ss_pred             cEEeccccchhHHHHHHHHHHHHhh--------ccchhcccccEEEecCCcc-------------ccchhhcCCccccce
Confidence                       23444555555421        1122345778899999554             47788887  77755


Q ss_pred             EEec
Q psy17703        490 FLLL  493 (720)
Q Consensus       490 ~~l~  493 (720)
                      +..+
T Consensus       298 ~~iP  301 (388)
T KOG0651|consen  298 VEIP  301 (388)
T ss_pred             eccC
Confidence            5555

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=97.98  E-value=5.9e-05  Score=81.77  Aligned_cols=69  Identities=26%  Similarity=0.262  Sum_probs=52.3

Q ss_pred             CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCce-EEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNART-SILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL  488 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~-~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl  488 (720)
                      ..|++||+.|+|+....++|+..||+-             |.++ .|+.|.||.              .|+|+++||+ .
T Consensus       133 ~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~~--------------~LLpTI~SRc-q  184 (342)
T PRK06964        133 ARVVVLYPAEALNVAAANALLKTLEEP-------------PPGTVFLLVSARID--------------RLLPTILSRC-R  184 (342)
T ss_pred             ceEEEEechhhcCHHHHHHHHHHhcCC-------------CcCcEEEEEECChh--------------hCcHHHHhcC-E
Confidence            459999999999999999999999853             2333 345555544              4899999999 4


Q ss_pred             EEEecCCChHHHHHHHHh
Q psy17703        489 IFLLLDPQSEQFDARLAR  506 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la~  506 (720)
                      .+.+.+++.++....+..
T Consensus       185 ~i~~~~~~~~~~~~~L~~  202 (342)
T PRK06964        185 QFPMTVPAPEAAAAWLAA  202 (342)
T ss_pred             EEEecCCCHHHHHHHHHH
Confidence            777888877776655554

>KOG0740|consensus

Probab=97.96  E-value=1.8e-06  Score=94.50  Aligned_cols=125  Identities=24%  Similarity=0.294  Sum_probs=70.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeec---CCceeeccccccCCh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLA---DSGVCCIDEFDKMSD  423 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~la---d~gI~~IDEidkm~~  423 (720)
                      -+||.||||+|||+|+++||..+.-..+ +   .++..++..+....   +..+++ .+-.|   ..+|+||||+|++-.
T Consensus       188 glLLfGPpgtGKtmL~~aiAsE~~atff-~---iSassLtsK~~Ge~---eK~vra-lf~vAr~~qPsvifidEidslls  259 (428)
T KOG0740|consen  188 GLLLFGPPGTGKTMLAKAIATESGATFF-N---ISASSLTSKYVGES---EKLVRA-LFKVARSLQPSVIFIDEIDSLLS  259 (428)
T ss_pred             hhheecCCCCchHHHHHHHHhhhcceEe-e---ccHHHhhhhccChH---HHHHHH-HHHHHHhcCCeEEEechhHHHHh
Confidence            6899999999999999999986642221 1   12222222221111   000000 00011   257899999987522


Q ss_pred             H--------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCC
Q psy17703        424 T--------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDP  495 (720)
Q Consensus       424 ~--------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~  495 (720)
                      .        .+-...+.+-+      ..|....-+.++.+++|+|-.+             .++.++++||--++.++.|
T Consensus       260 ~Rs~~e~e~srr~ktefLiq------~~~~~s~~~drvlvigaTN~P~-------------e~Dea~~Rrf~kr~yiplP  320 (428)
T KOG0740|consen  260 KRSDNEHESSRRLKTEFLLQ------FDGKNSAPDDRVLVIGATNRPW-------------ELDEAARRRFVKRLYIPLP  320 (428)
T ss_pred             hcCCcccccchhhhhHHHhh------hccccCCCCCeEEEEecCCCch-------------HHHHHHHHHhhceeeecCC
Confidence            1        12222233221      2333334455899999999776             5788999999855555555


Q ss_pred             ChH
Q psy17703        496 QSE  498 (720)
Q Consensus       496 ~~~  498 (720)
                      ..+
T Consensus       321 d~e  323 (428)
T KOG0740|consen  321 DYE  323 (428)
T ss_pred             CHH
Confidence            444

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=3.2e-05  Score=81.10  Aligned_cols=125  Identities=20%  Similarity=0.295  Sum_probs=87.3

Q ss_pred             CCceeeccccccCChH------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCccccccc
Q psy17703        409 DSGVCCIDEFDKMSDT------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNI  476 (720)
Q Consensus       409 d~gI~~IDEidkm~~~------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~  476 (720)
                      +.||+|||||||....            .|--|+...|--+|+. |-|...+  ....+|||.-         ..+..-.
T Consensus       250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~T-KyG~VkT--dHILFIasGA---------Fh~sKPS  317 (444)
T COG1220         250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVST-KYGPVKT--DHILFIASGA---------FHVAKPS  317 (444)
T ss_pred             hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeec-ccccccc--ceEEEEecCc---------eecCChh
Confidence            5699999999997432            2445777777666653 4443322  2456666543         1122233


Q ss_pred             CCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhc
Q psy17703        477 RLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKL  546 (720)
Q Consensus       477 ~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~  546 (720)
                      +|-|.|.-||.+.+.+...+.++..+.|.+ -...+++.|.+..+. .+.-.++++|.+.|++..+.+...
T Consensus       318 DLiPELQGRfPIRVEL~~Lt~~Df~rILte-p~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~  387 (444)
T COG1220         318 DLIPELQGRFPIRVELDALTKEDFERILTE-PKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEK  387 (444)
T ss_pred             hcChhhcCCCceEEEcccCCHHHHHHHHcC-cchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhccc
Confidence            688999999999999999988887766653 245688889887763 567789999999999887776553

>KOG0730|consensus

Probab=97.87  E-value=6.2e-05  Score=85.35  Aligned_cols=131  Identities=25%  Similarity=0.231  Sum_probs=78.1

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCC--ccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGK--GSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~--~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      ...+|++||||||||.+++++++......+. .+.  -+...|.+....+..     .-+++.  .+...++||||+|.+
T Consensus       218 prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~-----f~~a~k--~~~psii~IdEld~l  290 (693)
T KOG0730|consen  218 PRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKA-----FAEALK--FQVPSIIFIDELDAL  290 (693)
T ss_pred             CCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHH-----HHHHhc--cCCCeeEeHHhHhhh
Confidence            4589999999999999999999865422211 111  011122221111111     111111  112679999999998


Q ss_pred             Ch----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc-cceeEE
Q psy17703        422 SD----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS-RFDLIF  490 (720)
Q Consensus       422 ~~----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls-RFdli~  490 (720)
                      -+          ..-..|+.+|+.-.           -.++..+++|+|...             .|.+++.+ |||--+
T Consensus       291 ~p~r~~~~~~e~Rv~sqlltL~dg~~-----------~~~~vivl~atnrp~-------------sld~alRRgRfd~ev  346 (693)
T KOG0730|consen  291 CPKREGADDVESRVVSQLLTLLDGLK-----------PDAKVIVLAATNRPD-------------SLDPALRRGRFDREV  346 (693)
T ss_pred             CCcccccchHHHHHHHHHHHHHhhCc-----------CcCcEEEEEecCCcc-------------ccChhhhcCCCccee
Confidence            75          22345666765321           124577889998654             47888887 999777


Q ss_pred             EecCCChHHHHHHHHh
Q psy17703        491 LLLDPQSEQFDARLAR  506 (720)
Q Consensus       491 ~l~d~~~~~~d~~la~  506 (720)
                      .+.-|....+...+..
T Consensus       347 ~IgiP~~~~RldIl~~  362 (693)
T KOG0730|consen  347 EIGIPGSDGRLDILRV  362 (693)
T ss_pred             eecCCCchhHHHHHHH
Confidence            7777765555444443

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=97.87  E-value=0.00015  Score=78.14  Aligned_cols=69  Identities=20%  Similarity=0.289  Sum_probs=52.0

Q ss_pred             CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCc-eEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNAR-TSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL  488 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~-~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl  488 (720)
                      ..|++||++++|+....++|+..||+-.             .+ ..++.|.||.              .++|+++||+- 
T Consensus       108 ~KV~iI~~a~~m~~~AaNaLLKtLEEPp-------------~~~~fiL~t~~~~--------------~llpTI~SRC~-  159 (325)
T PRK06871        108 NKVVYIQGAERLTEAAANALLKTLEEPR-------------PNTYFLLQADLSA--------------ALLPTIYSRCQ-  159 (325)
T ss_pred             ceEEEEechhhhCHHHHHHHHHHhcCCC-------------CCeEEEEEECChH--------------hCchHHHhhce-
Confidence            4699999999999999999999999642             22 3345555544              48999999995 


Q ss_pred             EEEecCCChHHHHHHHHh
Q psy17703        489 IFLLLDPQSEQFDARLAR  506 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la~  506 (720)
                      .+.+.+++.++....|..
T Consensus       160 ~~~~~~~~~~~~~~~L~~  177 (325)
T PRK06871        160 TWLIHPPEEQQALDWLQA  177 (325)
T ss_pred             EEeCCCCCHHHHHHHHHH
Confidence            677887777766555554

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=97.87  E-value=2.9e-05  Score=75.45  Aligned_cols=57  Identities=25%  Similarity=0.385  Sum_probs=39.8

Q ss_pred             CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEE-ecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703        409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSIL-AAANPCDSQWNTSKTIIDNIRLPHTLLSRFD  487 (720)
Q Consensus       409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~ii-aaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd  487 (720)
                      ...|++|||+|+|+.+.+++|+..||+-             |.++.++ .|.|+.              ++.++++||+-
T Consensus       102 ~~KviiI~~ad~l~~~a~NaLLK~LEep-------------p~~~~fiL~t~~~~--------------~il~TI~SRc~  154 (162)
T PF13177_consen  102 KYKVIIIDEADKLTEEAQNALLKTLEEP-------------PENTYFILITNNPS--------------KILPTIRSRCQ  154 (162)
T ss_dssp             SSEEEEEETGGGS-HHHHHHHHHHHHST-------------TTTEEEEEEES-GG--------------GS-HHHHTTSE
T ss_pred             CceEEEeehHhhhhHHHHHHHHHHhcCC-------------CCCEEEEEEECChH--------------HChHHHHhhce
Confidence            4569999999999999999999999974             2334444 444433              58999999995


Q ss_pred             eEEEec
Q psy17703        488 LIFLLL  493 (720)
Q Consensus       488 li~~l~  493 (720)
                       .+.+.
T Consensus       155 -~i~~~  159 (162)
T PF13177_consen  155 -VIRFR  159 (162)
T ss_dssp             -EEEE-
T ss_pred             -EEecC
Confidence             44443

...

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=97.84  E-value=0.00012  Score=79.49  Aligned_cols=131  Identities=19%  Similarity=0.250  Sum_probs=78.1

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCcc------ccccccceee-cCcc--------ccc----eeee
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGS------SAVGLTAYIT-KDPE--------TRQ----MVLQ  401 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~s------s~~glta~~~-~~~~--------~~~----~~~~  401 (720)
                      .+-.||.||+|+||++++.++++.+-..    ...+|.=.      .+.+-....+ .+..        .++    ....
T Consensus        24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~  103 (334)
T PRK07993         24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEH  103 (334)
T ss_pred             ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhhc
Confidence            3467899999999999999999966321    00111100      0000000000 0000        000    0111


Q ss_pred             cceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCc-eEEEecccCCCCCCCCCcccccccCCCh
Q psy17703        402 TGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNAR-TSILAAANPCDSQWNTSKTIIDNIRLPH  480 (720)
Q Consensus       402 ~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~-~~iiaaaNp~~g~~~~~~~~~~~~~l~~  480 (720)
                      |   ..+...|++||+.++|+....++|+..||+-.             .+ +.|+.|.||.              +|+|
T Consensus       104 ~---~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-------------~~t~fiL~t~~~~--------------~lLp  153 (334)
T PRK07993        104 A---RLGGAKVVWLPDAALLTDAAANALLKTLEEPP-------------ENTWFFLACREPA--------------RLLA  153 (334)
T ss_pred             c---ccCCceEEEEcchHhhCHHHHHHHHHHhcCCC-------------CCeEEEEEECChh--------------hChH
Confidence            1   12345699999999999999999999999632             22 3455555544              4999


Q ss_pred             hhhccceeEEEecCCChHHHHHHHHh
Q psy17703        481 TLLSRFDLIFLLLDPQSEQFDARLAR  506 (720)
Q Consensus       481 aLlsRFdli~~l~d~~~~~~d~~la~  506 (720)
                      +++||+- .+.+..++.++...-+.+
T Consensus       154 TIrSRCq-~~~~~~~~~~~~~~~L~~  178 (334)
T PRK07993        154 TLRSRCR-LHYLAPPPEQYALTWLSR  178 (334)
T ss_pred             HHHhccc-cccCCCCCHHHHHHHHHH
Confidence            9999997 567777766665555544

>KOG1808|consensus

Probab=97.79  E-value=2.4e-05  Score=98.25  Aligned_cols=151  Identities=16%  Similarity=0.233  Sum_probs=106.5

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCcccc--CCccccccccceeecCccccceeeecceeeec--CCceeeccccc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTS--GKGSSAVGLTAYITKDPETRQMVLQTGALVLA--DSGVCCIDEFD  419 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~--g~~ss~~glta~~~~~~~~~~~~~~~G~l~la--d~gI~~IDEid  419 (720)
                      +..++||-||.|+|||.++.++++.....+..-  ......-.+....+ ...+|....+-|.++-|  +|..+++||++
T Consensus       439 ~~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~-~~~~g~l~freg~LV~Alr~G~~~vlD~ln  517 (1856)
T KOG1808|consen  439 GKFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYV-ADDNGDLVFREGVLVQALRNGDWIVLDELN  517 (1856)
T ss_pred             CCCCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhh-cCCCCCeeeehhHHHHHHHhCCEEEecccc
Confidence            668999999999999999999999775432211  11111111111111 12346677788888766  57789999999


Q ss_pred             cCChHHHHHHHHHHHh-ceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChH
Q psy17703        420 KMSDTTRSILHEVMEQ-QTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSE  498 (720)
Q Consensus       420 km~~~~~~~L~e~mE~-~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~  498 (720)
                      ..+.++.++|.++++. +.+.+...........++.++|+-||...- .+      .-.+..+|.+||. .+.+.+.+.+
T Consensus       518 la~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y-~g------rk~lsRa~~~rf~-e~~f~~~~e~  589 (1856)
T KOG1808|consen  518 LAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTY-GG------RKILSRALRNRFI-ELHFDDIGEE  589 (1856)
T ss_pred             ccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCcccc-ch------hhhhhhcccccch-hhhhhhcCch
Confidence            9999999999999987 888887777777778899999999987432 22      2257889999997 4444444544


Q ss_pred             HHHHH
Q psy17703        499 QFDAR  503 (720)
Q Consensus       499 ~~d~~  503 (720)
                      +....
T Consensus       590 e~~~i  594 (1856)
T KOG1808|consen  590 ELEEI  594 (1856)
T ss_pred             hhhhh
Confidence            44433

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=97.79  E-value=0.00026  Score=76.05  Aligned_cols=102  Identities=25%  Similarity=0.262  Sum_probs=57.6

Q ss_pred             CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      .||+||||.+-++-+-.+.|..+||...-              -.++.|+|.--..-.+. ....-..+|..||+|+ ++
T Consensus       279 pGVLFIDEvHmLDiEcFsfLnralEs~~s--------------PiiIlATNRg~~~irGt-~~~sphGiP~DlLDRl-lI  342 (398)
T PF06068_consen  279 PGVLFIDEVHMLDIECFSFLNRALESELS--------------PIIILATNRGITKIRGT-DIISPHGIPLDLLDRL-LI  342 (398)
T ss_dssp             E-EEEEESGGGSBHHHHHHHHHHHTSTT----------------EEEEEES-SEEE-BTT-S-EEETT--HHHHTTE-EE
T ss_pred             cceEEecchhhccHHHHHHHHHHhcCCCC--------------cEEEEecCceeeeccCc-cCcCCCCCCcchHhhc-EE
Confidence            38999999999999999999999986432              23566677432211111 2233457999999999 56


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTY  540 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y  540 (720)
                      +...+...++..+.|.-+            |+ .-.-.++++|.+.|...-
T Consensus       343 I~t~py~~~ei~~Il~iR------------~~-~E~v~i~~~al~~L~~ig  380 (398)
T PF06068_consen  343 IRTKPYSEEEIKQILKIR------------AK-EEDVEISEDALDLLTKIG  380 (398)
T ss_dssp             EEE----HHHHHHHHHHH------------HH-HCT--B-HHHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHhh------------hh-hhcCcCCHHHHHHHHHHh
Confidence            666666655554444411            22 235678888888776443

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=97.79  E-value=0.00061  Score=73.45  Aligned_cols=130  Identities=16%  Similarity=0.181  Sum_probs=75.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccc---eeecCccccceee--ecceeeecCCceeeccccccC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTA---YITKDPETRQMVL--QTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta---~~~~~~~~~~~~~--~~G~l~lad~gI~~IDEidkm  421 (720)
                      -.||+||+|+||+++++.+++.+-.... .+.......+..   ....-...++..-  .... ..++..|++||++|+|
T Consensus        28 a~Lf~G~~G~Gk~~la~~~a~~l~c~~~-~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p-~~~~~kv~iI~~ad~m  105 (313)
T PRK05564         28 AHIIVGEDGIGKSLLAKEIALKILGKSQ-QREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKP-YEGDKKVIIIYNSEKM  105 (313)
T ss_pred             eEEeECCCCCCHHHHHHHHHHHHcCCCC-CCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCc-ccCCceEEEEechhhc
Confidence            3489999999999999999986522100 000000000000   0000000000000  0001 2345679999999999


Q ss_pred             ChHHHHHHHHHHHhceEeeeccCeEEeecCce-EEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHH
Q psy17703        422 SDTTRSILHEVMEQQTLSIAKAGIICQLNART-SILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQF  500 (720)
Q Consensus       422 ~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~-~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~  500 (720)
                      +.+..++|+..+|+-             |..+ .|+.|.||.              .+.+++.||+- ++.+..++.++.
T Consensus       106 ~~~a~naLLK~LEep-------------p~~t~~il~~~~~~--------------~ll~TI~SRc~-~~~~~~~~~~~~  157 (313)
T PRK05564        106 TEQAQNAFLKTIEEP-------------PKGVFIILLCENLE--------------QILDTIKSRCQ-IYKLNRLSKEEI  157 (313)
T ss_pred             CHHHHHHHHHHhcCC-------------CCCeEEEEEeCChH--------------hCcHHHHhhce-eeeCCCcCHHHH
Confidence            999999999999852             2223 344444442              48899999995 777877777665


Q ss_pred             HHHHHh
Q psy17703        501 DARLAR  506 (720)
Q Consensus       501 d~~la~  506 (720)
                      ...+.+
T Consensus       158 ~~~l~~  163 (313)
T PRK05564        158 EKFISY  163 (313)
T ss_pred             HHHHHH
Confidence            544443

>PF13337 Lon_2: Putative ATP-dependent Lon protease

Probab=97.75  E-value=0.00044  Score=76.40  Aligned_cols=212  Identities=16%  Similarity=0.187  Sum_probs=121.0

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC-
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS-  422 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~-  422 (720)
                      .+.|++=.||.|||||.+-+-   ++|.+...+|-..+.+-|....    .++    +.|.+..  -.++++||+..++ 
T Consensus       207 ~N~NliELgPrGTGKS~vy~e---iSp~~~liSGG~~T~A~LFyn~----~~~----~~GlV~~--~D~VafDEv~~i~f  273 (457)
T PF13337_consen  207 RNYNLIELGPRGTGKSYVYKE---ISPYGILISGGQVTVAKLFYNM----STG----QIGLVGR--WDVVAFDEVAGIKF  273 (457)
T ss_pred             cccceEEEcCCCCCceeehhh---cCcccEEEECCCcchHHheeec----cCC----cceeeee--ccEEEEEeccCccc
Confidence            678999999999999977554   3465666666555554443221    112    3455433  4578999998875 


Q ss_pred             --hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCC--CCCCcc----cccccCCChhhhccceeEEEecC
Q psy17703        423 --DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQ--WNTSKT----IIDNIRLPHTLLSRFDLIFLLLD  494 (720)
Q Consensus       423 --~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~--~~~~~~----~~~~~~l~~aLlsRFdli~~l~d  494 (720)
                        ++....|...||.+..+..+    .+..+.++++...|....-  ......    +.+.++ ..|++|||...+.=..
T Consensus       274 ~d~d~i~imK~YMesG~fsRG~----~~i~a~as~vf~GNi~~~v~~~~~~~~lf~~lP~~~~-DsAflDRiH~~iPGWe  348 (457)
T PF13337_consen  274 KDKDEIQIMKDYMESGSFSRGK----EEINADASMVFVGNINQSVENMLKTSHLFEPLPEEMR-DSAFLDRIHGYIPGWE  348 (457)
T ss_pred             CChHHHHHHHHHHhccceeecc----cccccceeEEEEcCcCCcchhccccchhhhhcCHHHH-HHHHHhHhheeccCcc
Confidence              45567888999999988744    3667788888888865211  111111    122223 6788999964332112


Q ss_pred             CChHHHHHHHHhhc--chhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703        495 PQSEQFDARLARHL--DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK  572 (720)
Q Consensus       495 ~~~~~~d~~la~~i--~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~  572 (720)
                      .|.- ....+..+.  ..+.+.+++..-|..        ......+.|.++        +-.++.|.-.++.|++.+.-|
T Consensus       349 iPk~-~~e~~t~~~gl~~Dy~aE~l~~LR~~--------~~~~~~~~~~~l--------g~~~~~RD~~AV~kt~SgllK  411 (457)
T PF13337_consen  349 IPKI-RPEMFTNGYGLIVDYFAEILHELRKQ--------SYSDAVDKYFKL--------GSNLSQRDTKAVKKTVSGLLK  411 (457)
T ss_pred             cccc-CHHHccCCceeeHHHHHHHHHHHHHH--------HHHHHHHhhEee--------CCCcchhhHHHHHHHHHHHHH
Confidence            2110 112222221  233333333333321        011111222211        112456989999999888888


Q ss_pred             Hc-CCCCCCHHhHHHHHHH
Q psy17703        573 MR-YSETVEVQDVDEAWRL  590 (720)
Q Consensus       573 l~-~~~~V~~~Dv~~Ai~l  590 (720)
                      |- -...++.+|+++.++.
T Consensus       412 LL~P~~~~~~ee~~~~l~~  430 (457)
T PF13337_consen  412 LLFPHGEFTKEELEECLRP  430 (457)
T ss_pred             hhCCCCCCCHHHHHHHHHH
Confidence            75 3467888888887765

>KOG0732|consensus

Probab=97.75  E-value=3e-05  Score=92.67  Aligned_cols=125  Identities=23%  Similarity=0.314  Sum_probs=77.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCcc----ccCCccccccccceeecCccccceeeecc----ee----eecCCceee
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQY----TSGKGSSAVGLTAYITKDPETRQMVLQTG----AL----VLADSGVCC  414 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~----~~g~~ss~~glta~~~~~~~~~~~~~~~G----~l----~lad~gI~~  414 (720)
                      -||++||||||||.++++++...++..-    ..-++..            ....|+.++-    .+    -..--.|+|
T Consensus       301 gvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD------------~lskwvgEaERqlrllFeeA~k~qPSIIf  368 (1080)
T KOG0732|consen  301 GVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD------------CLSKWVGEAERQLRLLFEEAQKTQPSIIF  368 (1080)
T ss_pred             ceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch------------hhccccCcHHHHHHHHHHHHhccCceEEe
Confidence            4999999999999999999987765311    1111111            1112222211    00    011236999


Q ss_pred             ccccccCCh-----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhh
Q psy17703        415 IDEFDKMSD-----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLL  483 (720)
Q Consensus       415 IDEidkm~~-----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLl  483 (720)
                      .||||-+.+           .....|+..|+         |..  -...+.+|+|+|...             .+.+||.
T Consensus       369 fdeIdGlapvrSskqEqih~SIvSTLLaLmd---------Gld--sRgqVvvigATnRpd-------------a~dpaLR  424 (1080)
T KOG0732|consen  369 FDEIDGLAPVRSSKQEQIHASIVSTLLALMD---------GLD--SRGQVVVIGATNRPD-------------AIDPALR  424 (1080)
T ss_pred             ccccccccccccchHHHhhhhHHHHHHHhcc---------CCC--CCCceEEEcccCCcc-------------ccchhhc
Confidence            999996544           12334444442         211  124678999999765             4778885


Q ss_pred             c--cceeEEEecCCChHHHHHHHHhh
Q psy17703        484 S--RFDLIFLLLDPQSEQFDARLARH  507 (720)
Q Consensus       484 s--RFdli~~l~d~~~~~~d~~la~~  507 (720)
                      +  |||-.|.+..|+.+.+...+..|
T Consensus       425 RPgrfdref~f~lp~~~ar~~Il~Ih  450 (1080)
T KOG0732|consen  425 RPGRFDREFYFPLPDVDARAKILDIH  450 (1080)
T ss_pred             CCcccceeEeeeCCchHHHHHHHHHh
Confidence            5  99999999888877776666655

>KOG0741|consensus

Probab=97.73  E-value=7.9e-06  Score=89.80  Aligned_cols=126  Identities=22%  Similarity=0.297  Sum_probs=70.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCC--ccccCCc--cccccccceeecCc---cccceeeecceeeecCCceeeccccc
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRS--QYTSGKG--SSAVGLTAYITKDP---ETRQMVLQTGALVLADSGVCCIDEFD  419 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~--~~~~g~~--ss~~glta~~~~~~---~~~~~~~~~G~l~lad~gI~~IDEid  419 (720)
                      -+||+||||||||.+||.+-+.+..-  -.+.|-.  +-.+|.+-.-+++-   ...+|.-. |+  -+.=.|+++||+|
T Consensus       258 GiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~-g~--~SgLHIIIFDEiD  334 (744)
T KOG0741|consen  258 GILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRL-GA--NSGLHIIIFDEID  334 (744)
T ss_pred             eEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhh-Cc--cCCceEEEehhhH
Confidence            68999999999999999999877210  1111211  11122222111110   01122211 11  0112488999998


Q ss_pred             cCCh-------------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--
Q psy17703        420 KMSD-------------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--  484 (720)
Q Consensus       420 km~~-------------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--  484 (720)
                      .+-+             ...+.|+.-|+          ....|+ +..+|+-+|...             -++.|||+  
T Consensus       335 AICKqRGS~~g~TGVhD~VVNQLLsKmD----------GVeqLN-NILVIGMTNR~D-------------lIDEALLRPG  390 (744)
T KOG0741|consen  335 AICKQRGSMAGSTGVHDTVVNQLLSKMD----------GVEQLN-NILVIGMTNRKD-------------LIDEALLRPG  390 (744)
T ss_pred             HHHHhcCCCCCCCCccHHHHHHHHHhcc----------cHHhhh-cEEEEeccCchh-------------hHHHHhcCCC
Confidence            7532             23344444442          222232 478999999654             47788888  


Q ss_pred             cceeEEEecCCChHH
Q psy17703        485 RFDLIFLLLDPQSEQ  499 (720)
Q Consensus       485 RFdli~~l~d~~~~~  499 (720)
                      ||.+...+.-|++.-
T Consensus       391 RlEVqmEIsLPDE~g  405 (744)
T KOG0741|consen  391 RLEVQMEISLPDEKG  405 (744)
T ss_pred             ceEEEEEEeCCCccC
Confidence            998888777665543

>KOG1051|consensus

Probab=97.66  E-value=0.00011  Score=87.16  Aligned_cols=113  Identities=19%  Similarity=0.202  Sum_probs=71.7

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCc----cccccccceeecCccccceeeecceeeecCCceeec
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKG----SSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCI  415 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~----ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~I  415 (720)
                      .+.-+||.||.|+|||.|++++|..+-.+    +......    +-..|...+++.....++.   .+++-.....|+++
T Consensus       590 ~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~L---teavrrrP~sVVLf  666 (898)
T KOG1051|consen  590 PDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQL---TEAVKRRPYSVVLF  666 (898)
T ss_pred             CCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHH---HHHHhcCCceEEEE
Confidence            45689999999999999999999976321    1111111    1111221111111111111   12333344679999


Q ss_pred             cccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccC
Q psy17703        416 DEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP  461 (720)
Q Consensus       416 DEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp  461 (720)
                      |||+|++++.++.|+++|+.+.++-. .|....+ .++.||.|+|-
T Consensus       667 deIEkAh~~v~n~llq~lD~GrltDs-~Gr~Vd~-kN~I~IMTsn~  710 (898)
T KOG1051|consen  667 EEIEKAHPDVLNILLQLLDRGRLTDS-HGREVDF-KNAIFIMTSNV  710 (898)
T ss_pred             echhhcCHHHHHHHHHHHhcCccccC-CCcEeec-cceEEEEeccc
Confidence            99999999999999999999998853 3444433 45788888874

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=97.65  E-value=9.1e-05  Score=80.87  Aligned_cols=65  Identities=23%  Similarity=0.286  Sum_probs=47.3

Q ss_pred             ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceE-EEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTS-ILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~-iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      -|++|||++.|+....++|+..||+-.             .++. ++.+.+|.              .+.+++.||+ ..
T Consensus       143 rVviIDeAd~l~~~aanaLLk~LEEpp-------------~~~~fiLit~~~~--------------~llptIrSRc-~~  194 (351)
T PRK09112        143 RIVIIDPADDMNRNAANAILKTLEEPP-------------ARALFILISHSSG--------------RLLPTIRSRC-QP  194 (351)
T ss_pred             eEEEEEchhhcCHHHHHHHHHHHhcCC-------------CCceEEEEECChh--------------hccHHHHhhc-cE
Confidence            499999999999999999999998631             2222 33344432              3679999999 48


Q ss_pred             EEecCCChHHHHHH
Q psy17703        490 FLLLDPQSEQFDAR  503 (720)
Q Consensus       490 ~~l~d~~~~~~d~~  503 (720)
                      +.+.+++.++....
T Consensus       195 i~l~pl~~~~~~~~  208 (351)
T PRK09112        195 ISLKPLDDDELKKA  208 (351)
T ss_pred             EEecCCCHHHHHHH
Confidence            88888877654433

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=97.63  E-value=0.00028  Score=77.45  Aligned_cols=69  Identities=29%  Similarity=0.332  Sum_probs=50.4

Q ss_pred             ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCce-EEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNART-SILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~-~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      -|++|||++.|+...+++|+..+|+-             +.++ .|+.|.+|.              .+.+++.||+. .
T Consensus       143 kVviIDead~m~~~aanaLLK~LEep-------------p~~~~~IL~t~~~~--------------~llpti~SRc~-~  194 (365)
T PRK07471        143 RVVIVDTADEMNANAANALLKVLEEP-------------PARSLFLLVSHAPA--------------RLLPTIRSRCR-K  194 (365)
T ss_pred             EEEEEechHhcCHHHHHHHHHHHhcC-------------CCCeEEEEEECCch--------------hchHHhhccce-E
Confidence            48999999999999999999999863             2223 344444432              36789999996 6


Q ss_pred             EEecCCChHHHHHHHHhh
Q psy17703        490 FLLLDPQSEQFDARLARH  507 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~  507 (720)
                      +.+.+++.++....+..+
T Consensus       195 i~l~~l~~~~i~~~L~~~  212 (365)
T PRK07471        195 LRLRPLAPEDVIDALAAA  212 (365)
T ss_pred             EECCCCCHHHHHHHHHHh
Confidence            778877777766666544

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=97.58  E-value=0.00027  Score=75.95  Aligned_cols=68  Identities=25%  Similarity=0.311  Sum_probs=49.6

Q ss_pred             CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceE-EEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTS-ILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL  488 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~-iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl  488 (720)
                      ..|++||+.|+|+....++|+..||+-             |.++. |+.|.||.              .|.|+++||+- 
T Consensus       114 ~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~~~fiL~~~~~~--------------~lLpTIrSRCq-  165 (319)
T PRK08769        114 AQVVIVDPADAINRAACNALLKTLEEP-------------SPGRYLWLISAQPA--------------RLPATIRSRCQ-  165 (319)
T ss_pred             cEEEEeccHhhhCHHHHHHHHHHhhCC-------------CCCCeEEEEECChh--------------hCchHHHhhhe-
Confidence            459999999999999999999999963             23343 34444433              48899999996 


Q ss_pred             EEEecCCChHHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARLA  505 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la  505 (720)
                      .+.+..++.++...-|.
T Consensus       166 ~i~~~~~~~~~~~~~L~  182 (319)
T PRK08769        166 RLEFKLPPAHEALAWLL  182 (319)
T ss_pred             EeeCCCcCHHHHHHHHH
Confidence            66677776665554444

>PRK06921 hypothetical protein; Provisional

Probab=97.55  E-value=1.4e-05  Score=84.00  Aligned_cols=26  Identities=31%  Similarity=0.489  Sum_probs=23.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .-+++|+|+||+|||.|+.++++.+.
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~  142 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELM  142 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHh
Confidence            45899999999999999999998664

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=97.50  E-value=0.00012  Score=66.00  Aligned_cols=99  Identities=20%  Similarity=0.286  Sum_probs=54.4

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH---
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT---  424 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~---  424 (720)
                      |+|+|+||+|||.+++.+++.+-+......  ..     ....+.+...-|.   |   .....++++|||......   
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~--~~-----~vy~~~~~~~~w~---g---Y~~q~vvi~DD~~~~~~~~~~   67 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPT--KD-----SVYTRNPGDKFWD---G---YQGQPVVIIDDFGQDNDGYNY   67 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHhccCC--CC-----cEEeCCCccchhh---c---cCCCcEEEEeecCccccccch
Confidence            579999999999999998875532210000  00     0011111111110   1   113578999999888754   


Q ss_pred             -HHHHHHHHHHhceEeeeccCeE---EeecCceEEEeccc
Q psy17703        425 -TRSILHEVMEQQTLSIAKAGII---CQLNARTSILAAAN  460 (720)
Q Consensus       425 -~~~~L~e~mE~~~vsi~k~g~~---~~l~a~~~iiaaaN  460 (720)
                       ....|..++.........++..   ..+++ -.|++++|
T Consensus        68 ~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s-~~vi~tsN  106 (107)
T PF00910_consen   68 SDESELIRLISSNPFQPNMADLEDKGTPFNS-KLVIITSN  106 (107)
T ss_pred             HHHHHHHHHHhcCCcccccccHhhCCCccCC-CEEEEcCC
Confidence             4556777777666655444432   22232 34666666

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=97.50  E-value=0.00046  Score=74.66  Aligned_cols=71  Identities=21%  Similarity=0.192  Sum_probs=50.9

Q ss_pred             cCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703        408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD  487 (720)
Q Consensus       408 ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd  487 (720)
                      +...|++||+++.|++..+++|+..||+..     .       ..+.|+.+.|+.              .+++++.||+-
T Consensus       112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-----~-------~~~~Ilvth~~~--------------~ll~ti~SRc~  165 (325)
T PRK08699        112 GGLRVILIHPAESMNLQAANSLLKVLEEPP-----P-------QVVFLLVSHAAD--------------KVLPTIKSRCR  165 (325)
T ss_pred             CCceEEEEechhhCCHHHHHHHHHHHHhCc-----C-------CCEEEEEeCChH--------------hChHHHHHHhh
Confidence            345699999999999999999999998642     0       113445555543              48899999995


Q ss_pred             eEEEecCCChHHHHHHHH
Q psy17703        488 LIFLLLDPQSEQFDARLA  505 (720)
Q Consensus       488 li~~l~d~~~~~~d~~la  505 (720)
                       ++.+.+++.++...-+.
T Consensus       166 -~~~~~~~~~~~~~~~L~  182 (325)
T PRK08699        166 -KMVLPAPSHEEALAYLR  182 (325)
T ss_pred             -hhcCCCCCHHHHHHHHH
Confidence             67777777666554444

>KOG0736|consensus

Probab=97.45  E-value=0.0017  Score=75.01  Aligned_cols=136  Identities=17%  Similarity=0.148  Sum_probs=84.5

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecC-------ccccceeeecceeeecCCceeeccc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKD-------PETRQMVLQTGALVLADSGVCCIDE  417 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~-------~~~~~~~~~~G~l~lad~gI~~IDE  417 (720)
                      ..-+||.|+||+|||++.+++++.+...++.-.    ...+++.....       -..+....+|--+.+.+-.++-||-
T Consensus       431 ~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evd----c~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~  506 (953)
T KOG0736|consen  431 NPSVLLHGPPGSGKTTVVRAVASELGLHLLEVD----CYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQ  506 (953)
T ss_pred             ceEEEEeCCCCCChHHHHHHHHHHhCCceEecc----HHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecC
Confidence            458999999999999999999999877665311    11111110000       0111223355566677777777777


Q ss_pred             cccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCCh
Q psy17703        418 FDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQS  497 (720)
Q Consensus       418 idkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~  497 (720)
                      ..--.-..+..++..|+.....        .-..+..++|+++...             ++|+.+.+-|-..+.+.-+.+
T Consensus       507 dgged~rl~~~i~~~ls~e~~~--------~~~~~~ivv~t~~s~~-------------~lp~~i~~~f~~ei~~~~lse  565 (953)
T KOG0736|consen  507 DGGEDARLLKVIRHLLSNEDFK--------FSCPPVIVVATTSSIE-------------DLPADIQSLFLHEIEVPALSE  565 (953)
T ss_pred             CCchhHHHHHHHHHHHhccccc--------CCCCceEEEEeccccc-------------cCCHHHHHhhhhhccCCCCCH
Confidence            6644444455666655411111        1123578889888655             699999998887788887877


Q ss_pred             HHHHHHHH
Q psy17703        498 EQFDARLA  505 (720)
Q Consensus       498 ~~~d~~la  505 (720)
                      +++.+.+.
T Consensus       566 ~qRl~iLq  573 (953)
T KOG0736|consen  566 EQRLEILQ  573 (953)
T ss_pred             HHHHHHHH
Confidence            77655544

>PRK12377 putative replication protein; Provisional

Probab=97.44  E-value=2.2e-05  Score=81.40  Aligned_cols=116  Identities=17%  Similarity=0.245  Sum_probs=64.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcccccccccee----ecCccccceeeecceeeecCCceeecccc--
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYI----TKDPETRQMVLQTGALVLADSGVCCIDEF--  418 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~----~~~~~~~~~~~~~G~l~lad~gI~~IDEi--  418 (720)
                      ..+++|+|+||||||.|+.++++.+...    |.  +....+..-    .+...........-.-.+..-.+++|||+  
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~----g~--~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~  174 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK----GR--SVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGI  174 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHc----CC--CeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCC
Confidence            4689999999999999999999876421    11  111111100    00000000000000001345679999999  


Q ss_pred             ccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703        419 DKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF  486 (720)
Q Consensus       419 dkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF  486 (720)
                      ...++..+..|+++++.+.-            .+..++-|+|-....|..        .+...++||.
T Consensus       175 ~~~s~~~~~~l~~ii~~R~~------------~~~ptiitSNl~~~~l~~--------~~~~ri~dRl  222 (248)
T PRK12377        175 QRETKNEQVVLNQIIDRRTA------------SMRSVGMLTNLNHEAMST--------LLGERVMDRM  222 (248)
T ss_pred             CCCCHHHHHHHHHHHHHHHh------------cCCCEEEEcCCCHHHHHH--------HhhHHHHHHH
Confidence            45567778899999886642            123456667755433322        2556777776

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.44  E-value=0.00068  Score=77.05  Aligned_cols=84  Identities=21%  Similarity=0.198  Sum_probs=58.1

Q ss_pred             cceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChh
Q psy17703        402 TGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHT  481 (720)
Q Consensus       402 ~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~a  481 (720)
                      .|+|..|++|++=+=|+-|.+.+...-|+.+-+++.+.-  .+....++.+-.|||.+|...  |+..+    +-.-..|
T Consensus       248 ~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~--~~~~~~i~~D~vIiaHsNE~E--~~~F~----~nk~nEA  319 (644)
T PRK15455        248 SGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNG--TEGIGAIPFDGIILAHSNESE--WQTFR----NNKNNEA  319 (644)
T ss_pred             CchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccC--CCCcceeccceeEEecCCHHH--HHHHh----cCccchh
Confidence            478888998887555888888887777777777776632  344557788999999999643  32221    1234589


Q ss_pred             hhccceeEEEecC
Q psy17703        482 LLSRFDLIFLLLD  494 (720)
Q Consensus       482 LlsRFdli~~l~d  494 (720)
                      |++|+- ++.+++
T Consensus       320 ~~DRi~-~V~VPY  331 (644)
T PRK15455        320 FLDRIY-IVKVPY  331 (644)
T ss_pred             hhceEE-EEeCCc
Confidence            999995 455543

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=97.39  E-value=0.00067  Score=73.05  Aligned_cols=69  Identities=26%  Similarity=0.362  Sum_probs=51.2

Q ss_pred             cCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCce-EEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703        408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNART-SILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF  486 (720)
Q Consensus       408 ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~-~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF  486 (720)
                      +...|++||++++|+....++|+..||+-.              ++ .|+.|.||.              .|.+++.||+
T Consensus       123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp--------------~~~fILi~~~~~--------------~Ll~TI~SRc  174 (314)
T PRK07399        123 APRKVVVIEDAETMNEAAANALLKTLEEPG--------------NGTLILIAPSPE--------------SLLPTIVSRC  174 (314)
T ss_pred             CCceEEEEEchhhcCHHHHHHHHHHHhCCC--------------CCeEEEEECChH--------------hCcHHHHhhc
Confidence            456799999999999999999999998632              22 234444442              5899999999


Q ss_pred             eeEEEecCCChHHHHHHHH
Q psy17703        487 DLIFLLLDPQSEQFDARLA  505 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la  505 (720)
                      - ++.+..+.+++....+.
T Consensus       175 q-~i~f~~l~~~~~~~~L~  192 (314)
T PRK07399        175 Q-IIPFYRLSDEQLEQVLK  192 (314)
T ss_pred             e-EEecCCCCHHHHHHHHH
Confidence            5 77787777776655544

>TIGR00602 rad24 checkpoint protein rad24

Probab=97.36  E-value=0.0011  Score=77.42  Aligned_cols=24  Identities=21%  Similarity=0.329  Sum_probs=21.8

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      ++|+||||+|||++++.+++.+..
T Consensus       113 llL~GP~GsGKTTl~~~la~~l~~  136 (637)
T TIGR00602       113 LLITGPSGCGKSTTIKILSKELGI  136 (637)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhh
Confidence            889999999999999999987753

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=97.34  E-value=0.00072  Score=72.70  Aligned_cols=133  Identities=19%  Similarity=0.233  Sum_probs=77.7

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccc---cCCcc------ccccccceeecCccccc-ee---ee------cceee
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT---SGKGS------SAVGLTAYITKDPETRQ-MV---LQ------TGALV  406 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~---~g~~s------s~~glta~~~~~~~~~~-~~---~~------~G~l~  406 (720)
                      .-+||.||.|+||+.+++++++.+-.....   +|.=.      ...+-....+.....+. ..   .+      ...-.
T Consensus        26 hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~  105 (319)
T PRK06090         26 GALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQ  105 (319)
T ss_pred             eeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCcc
Confidence            358999999999999999999966322110   11000      00000000011000000 00   00      00011


Q ss_pred             ecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceE-EEecccCCCCCCCCCcccccccCCChhhhcc
Q psy17703        407 LADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTS-ILAAANPCDSQWNTSKTIIDNIRLPHTLLSR  485 (720)
Q Consensus       407 lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~-iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsR  485 (720)
                      .+...|++||++++|+....++|+..+|+-             |.++. |+.|.||.              ++.|+++||
T Consensus       106 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~~--------------~lLpTI~SR  158 (319)
T PRK06090        106 LNGYRLFVIEPADAMNESASNALLKTLEEP-------------APNCLFLLVTHNQK--------------RLLPTIVSR  158 (319)
T ss_pred             cCCceEEEecchhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh--------------hChHHHHhc
Confidence            223459999999999999999999999863             23333 44455544              488999999


Q ss_pred             ceeEEEecCCChHHHHHHHHh
Q psy17703        486 FDLIFLLLDPQSEQFDARLAR  506 (720)
Q Consensus       486 Fdli~~l~d~~~~~~d~~la~  506 (720)
                      +- .+.+..++.++...-+..
T Consensus       159 Cq-~~~~~~~~~~~~~~~L~~  178 (319)
T PRK06090        159 CQ-QWVVTPPSTAQAMQWLKG  178 (319)
T ss_pred             ce-eEeCCCCCHHHHHHHHHH
Confidence            96 677877777665555543

>KOG2680|consensus

Probab=97.30  E-value=0.0064  Score=63.20  Aligned_cols=181  Identities=20%  Similarity=0.216  Sum_probs=114.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT  424 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~  424 (720)
                      ..-.||.||+|-=|+..-..+...                          .-+|.-+..+-.  -.|++||||.+-++-+
T Consensus       252 G~lALFsGdTGEIr~EvRdqin~K--------------------------V~eWreEGKAei--vpGVLFIDEvHMLDIE  303 (454)
T KOG2680|consen  252 GFLALFSGDTGEIRSEVRDQINTK--------------------------VAEWREEGKAEI--VPGVLFIDEVHMLDIE  303 (454)
T ss_pred             ceEEEEeCCcccccHHHHHHHHHH--------------------------HHHHHhcCCeee--ccceEEEeeehhhhhH
Confidence            356789999998887654444221                          113333322211  2689999999999998


Q ss_pred             HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHH
Q psy17703        425 TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARL  504 (720)
Q Consensus       425 ~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~l  504 (720)
                      -.+.|..++|...--              .++.|+|.-..+-.+. .......+|-.|++|. |++...+...++....|
T Consensus       304 cFsFlNrAlE~d~~P--------------iiimaTNrgit~iRGT-n~~SphGiP~D~lDR~-lII~t~py~~~d~~~IL  367 (454)
T KOG2680|consen  304 CFSFLNRALENDMAP--------------IIIMATNRGITRIRGT-NYRSPHGIPIDLLDRM-LIISTQPYTEEDIKKIL  367 (454)
T ss_pred             HHHHHHHHhhhccCc--------------EEEEEcCCceEEeecC-CCCCCCCCcHHHhhhh-heeecccCcHHHHHHHH
Confidence            899999999865322              2444555322111110 0011236999999999 56666666666554444


Q ss_pred             HhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhH
Q psy17703        505 ARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDV  584 (720)
Q Consensus       505 a~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv  584 (720)
                      .-.            + +.-...++++|.+.|...-.            ..+.|....|+..|.-.|.-+....|+.+|+
T Consensus       368 ~iR------------c-~EEdv~m~~~A~d~Lt~i~~------------~tsLRYai~Lit~a~~~~~krk~~~v~~~di  422 (454)
T KOG2680|consen  368 RIR------------C-QEEDVEMNPDALDLLTKIGE------------ATSLRYAIHLITAASLVCLKRKGKVVEVDDI  422 (454)
T ss_pred             Hhh------------h-hhhccccCHHHHHHHHHhhh------------hhhHHHHHHHHHHHHHHHHHhcCceeehhHH
Confidence            321            1 11244677888877763211            1234778888888888888888899999999


Q ss_pred             HHHHHHHHHH
Q psy17703        585 DEAWRLHREA  594 (720)
Q Consensus       585 ~~Ai~l~~~~  594 (720)
                      +.|.+||-+.
T Consensus       423 ~r~y~LFlD~  432 (454)
T KOG2680|consen  423 ERVYRLFLDE  432 (454)
T ss_pred             HHHHHHHhhh
Confidence            9999998643

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.30  E-value=0.0024  Score=64.64  Aligned_cols=135  Identities=16%  Similarity=0.169  Sum_probs=73.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC----CCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP----RSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p----r~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      -||||+|--|||||+|++++.....    |.+-.+-  .....+..-      ......      ....-|+|+|++.-=
T Consensus        86 NnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k--~dl~~Lp~l------~~~Lr~------~~~kFIlFcDDLSFe  151 (287)
T COG2607          86 NNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDK--EDLATLPDL------VELLRA------RPEKFILFCDDLSFE  151 (287)
T ss_pred             cceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcH--HHHhhHHHH------HHHHhc------CCceEEEEecCCCCC
Confidence            5999999999999999999987542    1111000  000000000      000000      123568999997432


Q ss_pred             Ch-HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCC---CCCCCCccc------ccccCCChhhhccceeEEE
Q psy17703        422 SD-TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD---SQWNTSKTI------IDNIRLPHTLLSRFDLIFL  491 (720)
Q Consensus       422 ~~-~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~---g~~~~~~~~------~~~~~l~~aLlsRFdli~~  491 (720)
                      .. +.--+|-.+||         |.....|+++.+-||+|...   ..|..+...      .+.+.=--+|-+||-|-..
T Consensus       152 ~gd~~yK~LKs~Le---------G~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~  222 (287)
T COG2607         152 EGDDAYKALKSALE---------GGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLS  222 (287)
T ss_pred             CCchHHHHHHHHhc---------CCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeec
Confidence            22 23446666664         44556689999999999531   111111111      1111111256679998888


Q ss_pred             ecCCChHHHHHH
Q psy17703        492 LLDPQSEQFDAR  503 (720)
Q Consensus       492 l~d~~~~~~d~~  503 (720)
                      +.+...+++-.+
T Consensus       223 F~~~~Q~~YL~~  234 (287)
T COG2607         223 FYPCDQDEYLKI  234 (287)
T ss_pred             ccCCCHHHHHHH
Confidence            877766655433

>KOG2035|consensus

Probab=97.25  E-value=0.0011  Score=68.31  Aligned_cols=69  Identities=22%  Similarity=0.395  Sum_probs=54.8

Q ss_pred             ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703        411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF  490 (720)
Q Consensus       411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~  490 (720)
                      .++.|.|.|++..+.|.+|++.||...             ..|.+|-.+|...             ++-+|+.||+ +.+
T Consensus       129 Kvvvi~ead~LT~dAQ~aLRRTMEkYs-------------~~~RlIl~cns~S-------------riIepIrSRC-l~i  181 (351)
T KOG2035|consen  129 KVVVINEADELTRDAQHALRRTMEKYS-------------SNCRLILVCNSTS-------------RIIEPIRSRC-LFI  181 (351)
T ss_pred             EEEEEechHhhhHHHHHHHHHHHHHHh-------------cCceEEEEecCcc-------------cchhHHhhhe-eEE
Confidence            478999999999999999999999653             3456677777432             5789999999 678


Q ss_pred             EecCCChHHHHHHHHh
Q psy17703        491 LLLDPQSEQFDARLAR  506 (720)
Q Consensus       491 ~l~d~~~~~~d~~la~  506 (720)
                      .++.|++++.-..+..
T Consensus       182 Rvpaps~eeI~~vl~~  197 (351)
T KOG2035|consen  182 RVPAPSDEEITSVLSK  197 (351)
T ss_pred             eCCCCCHHHHHHHHHH
Confidence            8999998887665553

>TIGR02653 Lon_rel_chp conserved hypothetical protein

Probab=97.23  E-value=0.0024  Score=73.47  Aligned_cols=215  Identities=17%  Similarity=0.225  Sum_probs=117.1

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC-
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS-  422 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~-  422 (720)
                      .+.|++=.||-|||||.+-+   +++|.+...+|-..+.+-|....    .++    +.|.+-+  -.++++||+..+. 
T Consensus       215 ~N~Nl~ELgPrgTGKS~~y~---eiSp~~~liSGG~~T~A~LFyn~----~~~----~~GlVg~--~D~VaFDEva~i~f  281 (675)
T TIGR02653       215 NNYNLCELGPRGTGKSHVYK---ECSPNSILMSGGQTTVANLFYNM----STR----QIGLVGM--WDVVAFDEVAGIEF  281 (675)
T ss_pred             cccceEEECCCCCCcceeee---ccCCceEEEECCccchhHeeEEc----CCC----ceeEEee--ccEEEEeecccccc
Confidence            67899999999999997766   45677777776655555443221    111    3454332  4578999997653 


Q ss_pred             --hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCC--CC----CCCcccccccCCChhhhccceeEEEecC
Q psy17703        423 --DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDS--QW----NTSKTIIDNIRLPHTLLSRFDLIFLLLD  494 (720)
Q Consensus       423 --~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g--~~----~~~~~~~~~~~l~~aLlsRFdli~~l~d  494 (720)
                        ++..+.|-..|+.+.++..+    .+..+.++++.-.|-...  .-    .-...+.+.++-..||++||.-.+.=..
T Consensus       282 ~d~d~v~imK~YM~sG~FsRG~----~~~~a~as~vfvGNi~~~v~~~~k~~~lf~~lP~~~~~DsAflDRiH~yiPGWe  357 (675)
T TIGR02653       282 KDKDGVQIMKDYMASGSFARGK----ESIEGKASIVFVGNINQSVETLVKTSHLFAPFPEAMRIDTAFFDRFHYYIPGWE  357 (675)
T ss_pred             CCHHHHHHHHHHhhcCcccccc----cccccceeEEEEcccCCchHHHhhcccccccCChhhcccchHHHHhhccCcCCc
Confidence              44566788889999887633    244466666665553311  00    0011112222235688888852221111


Q ss_pred             CChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHH-
Q psy17703        495 PQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKM-  573 (720)
Q Consensus       495 ~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l-  573 (720)
                      .|. -..+.+..+.  -+.-.|++.+-..++.    .......+.|..+        +-.++.|.-.++.|+.-++-|+ 
T Consensus       358 iPk-~~~e~~t~~y--Gl~~DylsE~l~~lR~----~~~~~~~~~~~~l--------~~~~~~RD~~aV~kt~SgllKLl  422 (675)
T TIGR02653       358 IPK-MRPEYFTNRY--GFIVDYLAEYMREMRK----RSFADAIDRFFKL--------GNNLNQRDVIAVRKTVSGLLKLL  422 (675)
T ss_pred             Ccc-CCHHHcccCC--cchHHHHHHHHHHHHh----hhHHHHHHhhEec--------CCCCchhhHHHHHHHHHHHHHHh
Confidence            111 0111222221  2233333333222211    0011111222211        1235569999999999888888 


Q ss_pred             cCCCCCCHHhHHHHHHH
Q psy17703        574 RYSETVEVQDVDEAWRL  590 (720)
Q Consensus       574 ~~~~~V~~~Dv~~Ai~l  590 (720)
                      --...++.+|+++++++
T Consensus       423 ~P~~~~~~ee~e~~l~~  439 (675)
T TIGR02653       423 YPDGEYTKDDVRECLTY  439 (675)
T ss_pred             CCCCCCCHHHHHHHHHH
Confidence            45678999999987765

This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].

>TIGR00368 Mg chelatase-related protein

Probab=97.22  E-value=0.00036  Score=79.51  Aligned_cols=66  Identities=30%  Similarity=0.500  Sum_probs=61.3

Q ss_pred             hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCC-CCCCC
Q psy17703        654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC-DSQWN  719 (720)
Q Consensus       654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~-~~~~~  719 (720)
                      .|.+..++.|++|+||+++|+......|++.||++.+.|.+.|...++++++.++||+||. .|+|+
T Consensus       288 pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~  354 (499)
T TIGR00368       288 PGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYG  354 (499)
T ss_pred             hhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCC
Confidence            4556788999999999999999999999999999999999999999999999999999998 78885

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PRK09862 putative ATP-dependent protease; Provisional

Probab=97.18  E-value=0.00038  Score=79.10  Aligned_cols=66  Identities=26%  Similarity=0.432  Sum_probs=61.5

Q ss_pred             hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCC-CCCCC
Q psy17703        654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC-DSQWN  719 (720)
Q Consensus       654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~-~~~~~  719 (720)
                      .|.+..+++|+.++||+..++.+....+++.||++.+.|.+.|...++++++-++||+||. .|.|+
T Consensus       287 pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~  353 (506)
T PRK09862        287 PGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQ  353 (506)
T ss_pred             hhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecC
Confidence            4667789999999999999999999999999999999999999999999999999999997 67664

>PRK08181 transposase; Validated

Probab=97.15  E-value=0.00011  Score=77.18  Aligned_cols=119  Identities=23%  Similarity=0.314  Sum_probs=64.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCccccccccceeecCccccceeeecceeeecCCceeecccccc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK  420 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk  420 (720)
                      .-|++|+||||||||.|+.+++..+-..    .|.+     ...+..........+.  ...-.-.+..-.+++|||++.
T Consensus       106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-----~~~L~~~l~~a~~~~~--~~~~l~~l~~~dLLIIDDlg~  178 (269)
T PRK08181        106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-----TTDLVQKLQVARRELQ--LESAIAKLDKFDLLILDDLAY  178 (269)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-----HHHHHHHHHHHHhCCc--HHHHHHHHhcCCEEEEecccc
Confidence            4589999999999999999998755321    1111     0011100000000000  000000123456899999987


Q ss_pred             CCh--HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703        421 MSD--TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF  486 (720)
Q Consensus       421 m~~--~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF  486 (720)
                      .+.  ..+..|+++++.+.-             +.++|-|+|-....|....   ....+..+++||.
T Consensus       179 ~~~~~~~~~~Lf~lin~R~~-------------~~s~IiTSN~~~~~w~~~~---~D~~~a~aildRL  230 (269)
T PRK08181        179 VTKDQAETSVLFELISARYE-------------RRSILITANQPFGEWNRVF---PDPAMTLAAVDRL  230 (269)
T ss_pred             ccCCHHHHHHHHHHHHHHHh-------------CCCEEEEcCCCHHHHHHhc---CCccchhhHHHhh
Confidence            755  345678888875421             1256778887766665421   1123556777887

>PRK08116 hypothetical protein; Validated

Probab=97.15  E-value=6e-05  Score=79.36  Aligned_cols=116  Identities=13%  Similarity=0.214  Sum_probs=62.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCccccccccceeecCccccce-eeeccee-eecCCceeecccc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLTAYITKDPETRQM-VLQTGAL-VLADSGVCCIDEF  418 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glta~~~~~~~~~~~-~~~~G~l-~lad~gI~~IDEi  418 (720)
                      +..++|+|+||||||.|+.++++.+-..    .|.+.     ..+...+ +....... ..+...+ .+.+..+++|||+
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~-----~~ll~~i-~~~~~~~~~~~~~~~~~~l~~~dlLviDDl  187 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF-----PQLLNRI-KSTYKSSGKEDENEIIRSLVNADLLILDDL  187 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH-----HHHHHHH-HHHHhccccccHHHHHHHhcCCCEEEEecc
Confidence            4569999999999999999999865321    11110     0000000 00000000 0000000 1334579999999


Q ss_pred             --ccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703        419 --DKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF  486 (720)
Q Consensus       419 --dkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF  486 (720)
                        .+.++..+..|+++++.+.            .....+|.|+|-....+      ..  .+...+.||+
T Consensus       188 g~e~~t~~~~~~l~~iin~r~------------~~~~~~IiTsN~~~~eL------~~--~~~~ri~sRl  237 (268)
T PRK08116        188 GAERDTEWAREKVYNIIDSRY------------RKGLPTIVTTNLSLEEL------KN--QYGKRIYDRI  237 (268)
T ss_pred             cCCCCCHHHHHHHHHHHHHHH------------HCCCCEEEECCCCHHHH------HH--HHhHHHHHHH
Confidence              5567777888998887642            11234677777443221      11  1346778884

>KOG1514|consensus

Probab=97.07  E-value=0.0076  Score=69.28  Aligned_cols=200  Identities=20%  Similarity=0.230  Sum_probs=111.2

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhC---------CCCccccCCcccccccccee--ecCccccce------------ee-e
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLV---------PRSQYTSGKGSSAVGLTAYI--TKDPETRQM------------VL-Q  401 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~---------pr~~~~~g~~ss~~glta~~--~~~~~~~~~------------~~-~  401 (720)
                      .-+.+.|-||||||..++.|.+.+         |...|..-.+.-..+....+  .-...+++.            .+ .
T Consensus       423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~  502 (767)
T KOG1514|consen  423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV  502 (767)
T ss_pred             eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence            478999999999999998888733         44444432222111111100  000011110            00 1


Q ss_pred             cceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChh
Q psy17703        402 TGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHT  481 (720)
Q Consensus       402 ~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~a  481 (720)
                      |+.  ....-|++|||+|.|-...|..|+-+.+--          +.-+++..|||-+|...              ||..
T Consensus       503 ~k~--~~~~~VvLiDElD~Lvtr~QdVlYn~fdWp----------t~~~sKLvvi~IaNTmd--------------lPEr  556 (767)
T KOG1514|consen  503 PKP--KRSTTVVLIDELDILVTRSQDVLYNIFDWP----------TLKNSKLVVIAIANTMD--------------LPER  556 (767)
T ss_pred             CCC--CCCCEEEEeccHHHHhcccHHHHHHHhcCC----------cCCCCceEEEEeccccc--------------CHHH
Confidence            111  122358999999999888888888776521          22257889999998653              4444


Q ss_pred             h-----hccceeE-EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCccc
Q psy17703        482 L-----LSRFDLI-FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISA  555 (720)
Q Consensus       482 L-----lsRFdli-~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~  555 (720)
                      +     -||.++. +.+.+...+++...+...+              .-.-.+..+|.+.... .+.         .+++
T Consensus       557 ~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL--------------~~~~~f~~~aielvar-kVA---------avSG  612 (767)
T KOG1514|consen  557 LLMNRVSSRLGLTRICFQPYTHEQLQEIISARL--------------KGLDAFENKAIELVAR-KVA---------AVSG  612 (767)
T ss_pred             HhccchhhhccceeeecCCCCHHHHHHHHHHhh--------------cchhhcchhHHHHHHH-HHH---------hccc
Confidence            3     4577754 3344444444433333211              0012234455554443 221         2344


Q ss_pred             CHHHHHHHHHHHHHHHHHcCC-------CCCCHHhHHHHHHHHHHHH
Q psy17703        556 YPRQLESLIRLSEAHAKMRYS-------ETVEVQDVDEAWRLHREAL  595 (720)
Q Consensus       556 t~R~le~lirla~A~A~l~~~-------~~V~~~Dv~~Ai~l~~~~l  595 (720)
                      ..|....+.+-|...|.-+..       ..|+..|+.+|++=|..+.
T Consensus       613 DaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~  659 (767)
T KOG1514|consen  613 DARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASP  659 (767)
T ss_pred             cHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhh
Confidence            557777777777777766555       6789999999987554443

>PRK06526 transposase; Provisional

Probab=97.05  E-value=0.0002  Score=74.66  Aligned_cols=109  Identities=16%  Similarity=0.219  Sum_probs=57.5

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC-
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS-  422 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~-  422 (720)
                      +.-|++|+||||||||.|+.+++..+...-+...- .+...+..........+..  ....-.+..-.+++|||++..+ 
T Consensus        97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f-~t~~~l~~~l~~~~~~~~~--~~~l~~l~~~dlLIIDD~g~~~~  173 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF-ATAAQWVARLAAAHHAGRL--QAELVKLGRYPLLIVDEVGYIPF  173 (254)
T ss_pred             cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh-hhHHHHHHHHHHHHhcCcH--HHHHHHhccCCEEEEcccccCCC
Confidence            35689999999999999999998755221000000 0000000000000000000  0000012335689999999765 


Q ss_pred             -hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCC
Q psy17703        423 -DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNT  468 (720)
Q Consensus       423 -~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~  468 (720)
                       +..+..|+++++.+.-             +.++|.++|-..+.|..
T Consensus       174 ~~~~~~~L~~li~~r~~-------------~~s~IitSn~~~~~w~~  207 (254)
T PRK06526        174 EPEAANLFFQLVSSRYE-------------RASLIVTSNKPFGRWGE  207 (254)
T ss_pred             CHHHHHHHHHHHHHHHh-------------cCCEEEEcCCCHHHHHH
Confidence             5556778888864321             12467788876665543

>KOG1969|consensus

Probab=97.02  E-value=0.0056  Score=70.55  Aligned_cols=82  Identities=22%  Similarity=0.303  Sum_probs=48.5

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeee---cceeee-cC--Cceeeccc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQ---TGALVL-AD--SGVCCIDE  417 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~---~G~l~l-ad--~gI~~IDE  417 (720)
                      ..-=+||+||||.|||+||..+|+.+.-.+.         ...|+--+....-.-.++   --.-++ ||  .-.++|||
T Consensus       325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVv---------EINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDE  395 (877)
T KOG1969|consen  325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVV---------EINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDE  395 (877)
T ss_pred             ccceEEeecCCCCChhHHHHHHHHhcCceEE---------EecccccccHHHHHHHHHHHHhhccccccCCCcceEEEec
Confidence            3446899999999999999999998763322         222221111100000000   000112 22  24678999


Q ss_pred             cccCChHHHHHHHHHHH
Q psy17703        418 FDKMSDTTRSILHEVME  434 (720)
Q Consensus       418 idkm~~~~~~~L~e~mE  434 (720)
                      ||-.++.....|+..++
T Consensus       396 IDGa~~~~Vdvilslv~  412 (877)
T KOG1969|consen  396 IDGAPRAAVDVILSLVK  412 (877)
T ss_pred             ccCCcHHHHHHHHHHHH
Confidence            99999887777777776

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=96.99  E-value=6.5e-05  Score=74.16  Aligned_cols=124  Identities=16%  Similarity=0.203  Sum_probs=53.7

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCC-CccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPR-SQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr-~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      ..-|++|+|+||||||.|+.++++.+-+ +..+  .-.+...+...+......+...-.-.  .+.+-.+++|||+...+
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v--~f~~~~~L~~~l~~~~~~~~~~~~~~--~l~~~dlLilDDlG~~~  121 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSV--LFITASDLLDELKQSRSDGSYEELLK--RLKRVDLLILDDLGYEP  121 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHHHTT--E--EEEEHHHHHHHHHCCHCCTTHCHHHH--HHHTSSCEEEETCTSS-
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcce--eEeecCceeccccccccccchhhhcC--ccccccEecccccceee
Confidence            3569999999999999999999875421 1000  00000001000000000000000000  13355789999997654


Q ss_pred             --hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703        423 --DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD  487 (720)
Q Consensus       423 --~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd  487 (720)
                        +.....|+++++.+.            ..+ .+|-|+|-....|....   .+-.+..+++||.-
T Consensus       122 ~~~~~~~~l~~ii~~R~------------~~~-~tIiTSN~~~~~l~~~~---~d~~~a~aildRl~  172 (178)
T PF01695_consen  122 LSEWEAELLFEIIDERY------------ERK-PTIITSNLSPSELEEVL---GDRALAEAILDRLL  172 (178)
T ss_dssp             --HHHHHCTHHHHHHHH------------HT--EEEEEESS-HHHHHT-------------------
T ss_pred             ecccccccchhhhhHhh------------ccc-CeEeeCCCchhhHhhcc---cccccccccccccc
Confidence              455667888876542            112 34558886655443321   12245677777763

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK09183 transposase/IS protein; Provisional

Probab=96.99  E-value=0.0001  Score=77.26  Aligned_cols=119  Identities=19%  Similarity=0.308  Sum_probs=63.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCC-C---ccccCCccccccccceeecCccccce--eeecceeeecCCceeecccc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPR-S---QYTSGKGSSAVGLTAYITKDPETRQM--VLQTGALVLADSGVCCIDEF  418 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr-~---~~~~g~~ss~~glta~~~~~~~~~~~--~~~~G~l~lad~gI~~IDEi  418 (720)
                      .-|++|+||||+|||.|+.+++..+.. +   .|.+.     ..+..........+..  .+..   .+....+++|||+
T Consensus       102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~-----~~l~~~l~~a~~~~~~~~~~~~---~~~~~dlLiiDdl  173 (259)
T PRK09183        102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA-----ADLLLQLSTAQRQGRYKTTLQR---GVMAPRLLIIDEI  173 (259)
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH-----HHHHHHHHHHHHCCcHHHHHHH---HhcCCCEEEEccc
Confidence            468999999999999999999765421 1   11110     0000000000000000  0000   0223468999999


Q ss_pred             ccCC--hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703        419 DKMS--DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF  486 (720)
Q Consensus       419 dkm~--~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF  486 (720)
                      +..+  ......|+++++.+.-             +-++|.|+|-..+.|.....  ..-.+..+++||.
T Consensus       174 g~~~~~~~~~~~lf~li~~r~~-------------~~s~iiTsn~~~~~w~~~~~--~d~~~~~ai~dRl  228 (259)
T PRK09183        174 GYLPFSQEEANLFFQVIAKRYE-------------KGSMILTSNLPFGQWDQTFA--GDAALTSAMLDRL  228 (259)
T ss_pred             ccCCCChHHHHHHHHHHHHHHh-------------cCcEEEecCCCHHHHHHHhc--CchhHHHHHHHHH
Confidence            8754  4455578888765310             12467788887777654210  1113445777776

>PF13148 DUF3987: Protein of unknown function (DUF3987)

Probab=96.98  E-value=0.0036  Score=69.13  Aligned_cols=183  Identities=20%  Similarity=0.216  Sum_probs=110.6

Q ss_pred             CceeeccccccC----Ch----HHHHHHHHHHHhceEeeeccCeE-Eee-cCceEEEecccCCCC-CCCCCcccccccCC
Q psy17703        410 SGVCCIDEFDKM----SD----TTRSILHEVMEQQTLSIAKAGII-CQL-NARTSILAAANPCDS-QWNTSKTIIDNIRL  478 (720)
Q Consensus       410 ~gI~~IDEidkm----~~----~~~~~L~e~mE~~~vsi~k~g~~-~~l-~a~~~iiaaaNp~~g-~~~~~~~~~~~~~l  478 (720)
                      +..++.||+..+    ..    ..+..|+++-+.+.+++.+.+.. ..+ +.++++++++-|..- ..-.  +-......
T Consensus       150 ~~l~~~dE~~~~~~~~~~~~~~~~~~~ll~~~dg~~~~~~R~~~~~~~i~~~~lsi~~~~QP~~l~~~~~--~~~~~~~~  227 (378)
T PF13148_consen  150 GLLLFSDEGGGLLNSMGRYGGGSDRDLLLKAWDGEPYSIDRKSRGSIYIENPRLSILGGIQPDVLKREIL--SAEDPEFR  227 (378)
T ss_pred             eEEEEchhHHHHHHHhhcccCCccHHHHHHHhCCCCeeeeeccCCcccCCCceEEEEeccChHHHHHHHh--hhhccccc
Confidence            346788897543    32    45678888888888888765533 333 478899998887531 1000  00001125


Q ss_pred             ChhhhccceeEEEecCCChHHH----------HHHHHhhcchhHHHHHHHHHH-----hhcCCcchHHHHHHHHHHHHHh
Q psy17703        479 PHTLLSRFDLIFLLLDPQSEQF----------DARLARHLDITVLRDYIAYAQ-----EHLSPTLSEEASQRLIQTYVDM  543 (720)
Q Consensus       479 ~~aLlsRFdli~~l~d~~~~~~----------d~~la~~i~~~~l~~~i~~ar-----~~~~p~ls~ea~~~l~~~y~~l  543 (720)
                      ..-|++||-  |.+++......          +..+...  .+.+...+....     ....-.++++|.+.+.++|..+
T Consensus       228 ~~Gll~RfL--~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~l~~~~~~~~~~~~~~l~ls~eA~~~~~~~~~~~  303 (378)
T PF13148_consen  228 GDGLLARFL--FVIPDSRKGRRFEFPVPEPIDDEALEAY--HERIKELLDWPPEDGSDEPIVLELSDEAKELFREWYNEL  303 (378)
T ss_pred             CCChHhhee--eeccCcccccccccCCCCcccHHHHHHH--HHHHHHHHhhhhcccCCCCeEEecCHHHHHHHHHHHHHH
Confidence            668899995  44433221110          0011100  112222222221     1122378999999999999887


Q ss_pred             hhcCCC-CCCc---ccCHHHHHHHHHHHHHHHHHc-----CCCCCCHHhHHHHHHHHHHHHHHh
Q psy17703        544 RKLGAG-RGRI---SAYPRQLESLIRLSEAHAKMR-----YSETVEVQDVDEAWRLHREALKQS  598 (720)
Q Consensus       544 r~~~~~-~~~~---~~t~R~le~lirla~A~A~l~-----~~~~V~~~Dv~~Ai~l~~~~l~~~  598 (720)
                      ...... .++.   ..-.|.-..+.|+|--++-++     ....|+.+++..|+.|.+..+.+.
T Consensus       304 ~~~~~~~~~~~~~~~~~~K~~~~~~RlA~ilh~~~~~~~~~~~~I~~~~~~~Ai~l~~~~~~~~  367 (378)
T PF13148_consen  304 ENELRQPGGDLAMRSFASKAAEQALRLALILHLFESGGSPPSTEISAETMERAIRLVEYFLEHA  367 (378)
T ss_pred             HHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCEECHHHHHHHHHHHHHHHHHH
Confidence            665422 2221   122366778999999999999     889999999999999998888765

>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins

Probab=96.96  E-value=0.0013  Score=66.02  Aligned_cols=97  Identities=14%  Similarity=0.199  Sum_probs=68.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT  424 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~  424 (720)
                      +.-++|.|+-|+|||++++.+...    .|++.....            ...+.     ...+...-++++||++.+...
T Consensus        52 d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~~------------~~kd~-----~~~l~~~~iveldEl~~~~k~  110 (198)
T PF05272_consen   52 DTVLVLVGKQGIGKSTFFRKLGPE----YFSDSINDF------------DDKDF-----LEQLQGKWIVELDELDGLSKK  110 (198)
T ss_pred             ceeeeEecCCcccHHHHHHHHhHH----hccCccccC------------CCcHH-----HHHHHHhHheeHHHHhhcchh
Confidence            567889999999999999988422    332221100            00010     112334568999999999999


Q ss_pred             HHHHHHHHHHhceEeeecc--CeEEeecCceEEEecccCC
Q psy17703        425 TRSILHEVMEQQTLSIAKA--GIICQLNARTSILAAANPC  462 (720)
Q Consensus       425 ~~~~L~e~mE~~~vsi~k~--g~~~~l~a~~~iiaaaNp~  462 (720)
                      ..+.|-..+-..+..+.+.  .....+|-+++++||+|..
T Consensus       111 ~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~  150 (198)
T PF05272_consen  111 DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDD  150 (198)
T ss_pred             hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCc
Confidence            9999999998888776543  3457788899999999964

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=96.92  E-value=0.0012  Score=64.64  Aligned_cols=23  Identities=35%  Similarity=0.654  Sum_probs=20.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      |++|.|+||+|||++++.+.+.+
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHh
Confidence            79999999999999999988876

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=96.87  E-value=0.0009  Score=71.90  Aligned_cols=85  Identities=16%  Similarity=0.162  Sum_probs=62.0

Q ss_pred             cceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChh
Q psy17703        402 TGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHT  481 (720)
Q Consensus       402 ~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~a  481 (720)
                      .|.+..|++|++=+=|+-|.+.+..-.|+.+.+++.+..  .+.....+.+..|||.+|+..  |+..+   .| .-.+|
T Consensus       226 ~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~--~~~~~~i~~D~liiAhsNe~E--~~~f~---~~-~~~eA  297 (358)
T PF08298_consen  226 SGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKV--DEDFGMIPFDELIIAHSNEEE--YNKFK---NN-KNNEA  297 (358)
T ss_pred             ccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceec--CCcccccccceeEEecCCHHH--HHHHh---cc-ccchh
Confidence            478888899998777999999998889999999888766  234455788899999999764  22111   11 12379


Q ss_pred             hhccceeEEEecCC
Q psy17703        482 LLSRFDLIFLLLDP  495 (720)
Q Consensus       482 LlsRFdli~~l~d~  495 (720)
                      |++|+. .+.+++.
T Consensus       298 f~DRi~-~I~VPY~  310 (358)
T PF08298_consen  298 FKDRIE-VIKVPYC  310 (358)
T ss_pred             hhhheE-EEecccc
Confidence            999995 5556544

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=96.81  E-value=0.0021  Score=64.42  Aligned_cols=63  Identities=30%  Similarity=0.513  Sum_probs=53.2

Q ss_pred             hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCC
Q psy17703        654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDS  716 (720)
Q Consensus       654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~  716 (720)
                      -|.+..|..|+..+||+-.+++..-.+|.+.|++..+.|+++|...+++|+.-++||+||--.
T Consensus        99 PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpC  161 (206)
T PF01078_consen   99 PGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPC  161 (206)
T ss_dssp             E-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S---
T ss_pred             cCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEeccccc
Confidence            467889999999999999999999999999999999999999999999999999999999753

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK06835 DNA replication protein DnaC; Validated

Probab=96.78  E-value=0.00017  Score=77.96  Aligned_cols=117  Identities=18%  Similarity=0.221  Sum_probs=62.5

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceee----cCc-cccceeeecceeeecCCceeeccccc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYIT----KDP-ETRQMVLQTGALVLADSGVCCIDEFD  419 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~----~~~-~~~~~~~~~G~l~lad~gI~~IDEid  419 (720)
                      .-+++|+|+||||||.|+.++++.+-+.      +.+...+++.-.    +.. .......+...-.+.+-.+++|||+.
T Consensus       183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~------g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG  256 (329)
T PRK06835        183 NENLLFYGNTGTGKTFLSNCIAKELLDR------GKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLG  256 (329)
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHHHHC------CCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccC
Confidence            4789999999999999999999866321      111222221100    000 00000000000112345789999996


Q ss_pred             cC--ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703        420 KM--SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD  487 (720)
Q Consensus       420 km--~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd  487 (720)
                      ..  ++..+..|+++++.+.-            .+-.+|-|+|-....|..        .+++.+.||+-
T Consensus       257 ~e~~t~~~~~~Lf~iin~R~~------------~~k~tIiTSNl~~~el~~--------~~~eri~SRL~  306 (329)
T PRK06835        257 TEKITEFSKSELFNLINKRLL------------RQKKMIISTNLSLEELLK--------TYSERISSRLL  306 (329)
T ss_pred             CCCCCHHHHHHHHHHHHHHHH------------CCCCEEEECCCCHHHHHH--------HHhHHHHHHHH
Confidence            54  55567788888875521            123456677744332211        24566677763

>PRK07952 DNA replication protein DnaC; Validated

Probab=96.72  E-value=0.00029  Score=72.94  Aligned_cols=111  Identities=18%  Similarity=0.341  Sum_probs=61.2

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcccccccccee----ec----C-ccccceeeecceeeecCCceeecc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYI----TK----D-PETRQMVLQTGALVLADSGVCCID  416 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~----~~----~-~~~~~~~~~~G~l~lad~gI~~ID  416 (720)
                      -+++|+|+||||||.|+.+++..+...    |.  +..-+++.-    .+    + ..+....++    .+..-.+++||
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~----g~--~v~~it~~~l~~~l~~~~~~~~~~~~~~l~----~l~~~dlLvID  169 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLR----GK--SVLIITVADIMSAMKDTFSNSETSEEQLLN----DLSNVDLLVID  169 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhc----CC--eEEEEEHHHHHHHHHHHHhhccccHHHHHH----HhccCCEEEEe
Confidence            489999999999999999999876321    11  111111100    00    0 000000111    12345689999


Q ss_pred             ccccCChH--HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703        417 EFDKMSDT--TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF  486 (720)
Q Consensus       417 Eidkm~~~--~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF  486 (720)
                      |++.....  ....|+++++.+.            ..+-.++-++|-....|..        .++..++||+
T Consensus       170 Dig~~~~s~~~~~~l~~Ii~~Ry------------~~~~~tiitSNl~~~~l~~--------~~g~ri~sRl  221 (244)
T PRK07952        170 EIGVQTESRYEKVIINQIVDRRS------------SSKRPTGMLTNSNMEEMTK--------LLGERVMDRM  221 (244)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHH------------hCCCCEEEeCCCCHHHHHH--------HhChHHHHHH
Confidence            99887544  3557888887542            1223456667744333221        2556677776

>PF13654 AAA_32: AAA domain; PDB: 3K1J_B

Probab=96.70  E-value=0.0073  Score=69.08  Aligned_cols=170  Identities=15%  Similarity=0.167  Sum_probs=99.1

Q ss_pred             eeeecceeeecCCceeeccccccCCh-HHHHHHHHHHHhceEeeeccCe----------EEeecCceEEEecccCCCCCC
Q psy17703        398 MVLQTGALVLADSGVCCIDEFDKMSD-TTRSILHEVMEQQTLSIAKAGI----------ICQLNARTSILAAANPCDSQW  466 (720)
Q Consensus       398 ~~~~~G~l~lad~gI~~IDEidkm~~-~~~~~L~e~mE~~~vsi~k~g~----------~~~l~a~~~iiaaaNp~~g~~  466 (720)
                      ..++||++-.|+||+++||--+-+.. .....|..++..+.+.+...+.          ....|.++-||-..++..   
T Consensus       321 ~~I~~GaLhkANGGyLIL~a~~LL~~p~~W~~LKr~L~~~~i~ie~~~~~~~~~~~~l~PepIpl~vKVILiG~~~~---  397 (509)
T PF13654_consen  321 TLIKPGALHKANGGYLILDAEDLLANPYAWERLKRALRTGEIEIESPEEYGLSSTVSLEPEPIPLDVKVILIGDREL---  397 (509)
T ss_dssp             GGEE--HHHHTTTSEEEETTGGGS-HHH-HHHHHHHHHHSEE--B-S---TTSGGGG-B-S-EE---EEEEEE-TTH---
T ss_pred             ceEcCceEEecCCeEEEEEHHHhhhChHHHHHHHHHHHcCceeeccccccccCCCCCCCCCCcceEEEEEEEcCHHH---
Confidence            45799999999999999999888874 5578999999999999865431          112233333333333211   


Q ss_pred             CCCcccccccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHH----HhhcCCcchHHHHHHHHHHHHH
Q psy17703        467 NTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYA----QEHLSPTLSEEASQRLIQTYVD  542 (720)
Q Consensus       467 ~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~a----r~~~~p~ls~ea~~~l~~~y~~  542 (720)
                           ...-....+.+..-|.+...+.+.-..          +.+-++.|+.+.    ++.--+.++.+|...++++...
T Consensus       398 -----y~~L~~~D~dF~~lFkv~aef~~~~~~----------~~e~~~~~~~~i~~~~~~~~L~~~~~~Av~~li~~~~R  462 (509)
T PF13654_consen  398 -----YYLLYEYDPDFYKLFKVKAEFDSEMPR----------TEENIRQYARFIASICQKEGLPPFDRSAVARLIEYSAR  462 (509)
T ss_dssp             -----HHHS-HHHHHHHHHHSEEEE--SEEE------------HHHHHHHHHHHHHHHHHHSS--BBHHHHHHHHHHHHH
T ss_pred             -----HHHHHHhCHHHHhCCCEEEEccccCCC----------CHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence                 000012345566666655555432221          122333444333    3333577899999999999877


Q ss_pred             hhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703        543 MRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL  590 (720)
Q Consensus       543 lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l  590 (720)
                      +   +..  .++.....+..+++-|...|+....+.|+.+||..|+.-
T Consensus       463 ~---~q~--kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~  505 (509)
T PF13654_consen  463 L---DQD--KLSLRFSWLADLLREANYWARKEGAKVITAEHVEQAIEE  505 (509)
T ss_dssp             C---C-S--EEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH
T ss_pred             H---hCC--EeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHc
Confidence            6   221  466667899999999999999999999999999999863

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.67  E-value=0.00044  Score=63.89  Aligned_cols=25  Identities=20%  Similarity=0.472  Sum_probs=19.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      .-+++++|+||+|||.+++.+++..
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999999865

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=96.67  E-value=0.0097  Score=70.31  Aligned_cols=46  Identities=22%  Similarity=0.350  Sum_probs=34.6

Q ss_pred             cccccccccCChhhHHHHHHhhhcceEEeeecceeEEEc-ccceEEeecC
Q psy17703        664 VCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLN-ARTSILAAAN  712 (720)
Q Consensus       664 ~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~-~~~~~~~~~~  712 (720)
                      +.-+||++|-.++.-..++++|.+..+.=++|   ++++ -+|.||.+.|
T Consensus       596 ViLlDEIEKAHpdV~nilLQVlDdGrLTD~~G---r~VdFrNtiIImTSN  642 (786)
T COG0542         596 VILLDEIEKAHPDVFNLLLQVLDDGRLTDGQG---RTVDFRNTIIIMTSN  642 (786)
T ss_pred             EEEechhhhcCHHHHHHHHHHhcCCeeecCCC---CEEecceeEEEEecc
Confidence            34789999999999999999999999887776   2333 2455555555

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=96.66  E-value=0.0047  Score=65.22  Aligned_cols=26  Identities=27%  Similarity=0.491  Sum_probs=23.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      -++||+||+|.|||++++...+.-|.
T Consensus        62 p~lLivG~snnGKT~Ii~rF~~~hp~   87 (302)
T PF05621_consen   62 PNLLIVGDSNNGKTMIIERFRRLHPP   87 (302)
T ss_pred             CceEEecCCCCcHHHHHHHHHHHCCC
Confidence            58999999999999999999887664

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PHA02774 E1; Provisional

Probab=96.64  E-value=0.0047  Score=70.43  Aligned_cols=103  Identities=17%  Similarity=0.184  Sum_probs=61.0

Q ss_pred             CCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        342 TPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       342 ~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      .|..-+++|+||||||||.|+-++++.+...+......               ...+.+.    .+++..++++||+..-
T Consensus       431 ~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~---------------~s~FwLq----pl~d~ki~vlDD~t~~  491 (613)
T PHA02774        431 IPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS---------------KSHFWLQ----PLADAKIALLDDATHP  491 (613)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC---------------ccccccc----hhccCCEEEEecCcch
Confidence            34556899999999999999999998874221110000               0122222    2557789999999322


Q ss_pred             C-hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCC
Q psy17703        422 S-DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD  463 (720)
Q Consensus       422 ~-~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~  463 (720)
                      - .-....|+.+++.+.+++.+....-.--...-+|-|+|...
T Consensus       492 ~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~  534 (613)
T PHA02774        492 CWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDV  534 (613)
T ss_pred             HHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCc
Confidence            1 22244688888888888754332111111233666788443

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=96.55  E-value=0.00056  Score=71.41  Aligned_cols=107  Identities=18%  Similarity=0.265  Sum_probs=58.2

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcccccccccee--ecCccccceeeecceee-ecCCceeecccccc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYI--TKDPETRQMVLQTGALV-LADSGVCCIDEFDK  420 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~--~~~~~~~~~~~~~G~l~-lad~gI~~IDEidk  420 (720)
                      ..-+++|+|+||||||.|+-+++..+-+.    |.....+...-.+  ++... ..-..+.-..- +..--+++|||+..
T Consensus       104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~----g~sv~f~~~~el~~~Lk~~~-~~~~~~~~l~~~l~~~dlLIiDDlG~  178 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKA----GISVLFITAPDLLSKLKAAF-DEGRLEEKLLRELKKVDLLIIDDIGY  178 (254)
T ss_pred             cCCcEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEEHHHHHHHHHHHH-hcCchHHHHHHHhhcCCEEEEecccC
Confidence            35699999999999999999998855321    1111111000000  00000 00000000011 34457899999988


Q ss_pred             CC--hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCC
Q psy17703        421 MS--DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNT  468 (720)
Q Consensus       421 m~--~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~  468 (720)
                      .+  ...++.+++++.+..-+            +.. +.++|-..+.|..
T Consensus       179 ~~~~~~~~~~~~q~I~~r~~~------------~~~-~~tsN~~~~~~~~  215 (254)
T COG1484         179 EPFSQEEADLLFQLISRRYES------------RSL-IITSNLSFGEWDE  215 (254)
T ss_pred             ccCCHHHHHHHHHHHHHHHhh------------ccc-eeecCCChHHHHh
Confidence            54  44577788877654322            222 6778877766654

>PHA02624 large T antigen; Provisional

Probab=96.52  E-value=0.0027  Score=72.59  Aligned_cols=120  Identities=15%  Similarity=0.210  Sum_probs=72.9

Q ss_pred             CCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        342 TPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       342 ~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      .|+.--+||+||||||||+++.++.+.+...+.. .+.            ......+.+  |  +++|.-++++|++..-
T Consensus       428 iPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vls-VNs------------Pt~ks~FwL--~--pl~D~~~~l~dD~t~~  490 (647)
T PHA02624        428 VPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLN-VNC------------PPDKLNFEL--G--CAIDQFMVVFEDVKGQ  490 (647)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEE-eeC------------CcchhHHHh--h--hhhhceEEEeeecccc
Confidence            3566789999999999999999999988422111 000            000011222  2  2557777788877322


Q ss_pred             Ch-----------HHHHHHHHHHHhc-eEeeeccC---eEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703        422 SD-----------TTRSILHEVMEQQ-TLSIAKAG---IICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF  486 (720)
Q Consensus       422 ~~-----------~~~~~L~e~mE~~-~vsi~k~g---~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF  486 (720)
                      .-           +...-|+.+|+-. .|++.+..   .....|.   .|-|+|..              -||.++.-||
T Consensus       491 ~~~~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PP---lliT~Ney--------------~iP~T~~~Rf  553 (647)
T PHA02624        491 PADNKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPP---GIVTMNEY--------------LIPQTVKARF  553 (647)
T ss_pred             ccccccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCC---eEEeecCc--------------ccchhHHHHH
Confidence            11           1235678888766 67765432   2223333   45677743              4999999999


Q ss_pred             eeEEEecCC
Q psy17703        487 DLIFLLLDP  495 (720)
Q Consensus       487 dli~~l~d~  495 (720)
                      -.++.+...
T Consensus       554 ~~~~~F~~k  562 (647)
T PHA02624        554 AKVLDFKPK  562 (647)
T ss_pred             HHhcccccc
Confidence            877776644

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=96.46  E-value=0.0039  Score=65.93  Aligned_cols=118  Identities=21%  Similarity=0.184  Sum_probs=68.2

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cC-Cccccccccceee-cCcc--------c----cceeeecceeeecCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SG-KGSSAVGLTAYIT-KDPE--------T----RQMVLQTGALVLADS  410 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g-~~ss~~glta~~~-~~~~--------~----~~~~~~~G~l~lad~  410 (720)
                      +-.||+||+|+||..+|..+++.+-..... .. .-....+-....+ .+..        .    ....+.|   ..+..
T Consensus        20 HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p---~e~~~   96 (290)
T PRK05917         20 SAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHP---YESPY   96 (290)
T ss_pred             eeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCc---cCCCc
Confidence            467799999999999999999866321100 00 0000000000000 0000        0    0011111   12335


Q ss_pred             ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCc-eEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNAR-TSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~-~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      .|++||+.|+|+.+.+++|+..||+-.             .+ ..++.|.||.              .++|+++||+- .
T Consensus        97 kv~ii~~ad~mt~~AaNaLLK~LEEPp-------------~~~~fiL~~~~~~--------------~ll~TI~SRcq-~  148 (290)
T PRK05917         97 KIYIIHEADRMTLDAISAFLKVLEDPP-------------QHGVIILTSAKPQ--------------RLPPTIRSRSL-S  148 (290)
T ss_pred             eEEEEechhhcCHHHHHHHHHHhhcCC-------------CCeEEEEEeCChh--------------hCcHHHHhcce-E
Confidence            699999999999999999999999632             22 3355555544              48999999996 4


Q ss_pred             EEecC
Q psy17703        490 FLLLD  494 (720)
Q Consensus       490 ~~l~d  494 (720)
                      +.+.+
T Consensus       149 ~~~~~  153 (290)
T PRK05917        149 IHIPM  153 (290)
T ss_pred             EEccc
Confidence            44543

>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]

Probab=96.28  E-value=0.086  Score=65.09  Aligned_cols=144  Identities=17%  Similarity=0.176  Sum_probs=84.8

Q ss_pred             CceeeccccccCCh-------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhh
Q psy17703        410 SGVCCIDEFDKMSD-------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTL  482 (720)
Q Consensus       410 ~gI~~IDEidkm~~-------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aL  482 (720)
                      .+|+|.|||+ |+.       ++.-.|+..||.|-+.-.-+..+.++ .+..+.+|+||.-..        ..+.++..+
T Consensus      1564 ~lVLFcDeIn-Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI-~~i~l~Gacnp~td~--------gRv~~~eRf 1633 (3164)
T COG5245        1564 DLVLFCDEIN-LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTI-CGIILYGACNPGTDE--------GRVKYYERF 1633 (3164)
T ss_pred             heEEEeeccC-CccccccCCCceEEeeHHHHHhcccccchhhhHhhh-cceEEEccCCCCCCc--------ccCccHHHH
Confidence            5799999998 553       34446778888764432222222332 467899999996421        123577777


Q ss_pred             hccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcC---CcchHHHHHHHHHHHHHhhhcCCC--CCCcccCH
Q psy17703        483 LSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLS---PTLSEEASQRLIQTYVDMRKLGAG--RGRISAYP  557 (720)
Q Consensus       483 lsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~---p~ls~ea~~~l~~~y~~lr~~~~~--~~~~~~t~  557 (720)
                      ++|=-++|.- +|..........    .-+.      +--.+.   -+++++.+.+-+..|...|.....  .+++..+|
T Consensus      1634 ~r~~v~vf~~-ype~~SL~~Iye----a~l~------~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~p 1702 (3164)
T COG5245        1634 IRKPVFVFCC-YPELASLRNIYE----AVLM------GSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKP 1702 (3164)
T ss_pred             hcCceEEEec-CcchhhHHHHHH----HHHH------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCh
Confidence            7776544444 554333222211    0001      111122   356788888888889888775432  34567789


Q ss_pred             HHHHHHHHHHHHHHHHc
Q psy17703        558 RQLESLIRLSEAHAKMR  574 (720)
Q Consensus       558 R~le~lirla~A~A~l~  574 (720)
                      |.|-+++|.-...|.-+
T Consensus      1703 ReLtR~lr~i~~yaeT~ 1719 (3164)
T COG5245        1703 RELTRSLRAIFGYAETR 1719 (3164)
T ss_pred             HHHHHHHHHHHhHHhcC
Confidence            99999888666655443

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=96.26  E-value=0.0056  Score=72.35  Aligned_cols=65  Identities=22%  Similarity=0.352  Sum_probs=60.9

Q ss_pred             hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCCCC
Q psy17703        654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQW  718 (720)
Q Consensus       654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~~~  718 (720)
                      .|.+..++.|+.++||+..|+......|+++|+++.+.+.+.|...++++++.|+|+.||..|.+
T Consensus       119 ~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l  183 (633)
T TIGR02442       119 PGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDL  183 (633)
T ss_pred             CcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCC
Confidence            56677889999999999999999999999999999999999999999999999999999988765

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>KOG2545|consensus

Probab=96.23  E-value=0.16  Score=55.07  Aligned_cols=199  Identities=22%  Similarity=0.249  Sum_probs=125.9

Q ss_pred             HHHHHHHHhhCCCCccccCCccccccc-cceeecCccccceeeecceeeecCCceeeccccc-------cCChHHHHHHH
Q psy17703        359 SQLLSYVYDLVPRSQYTSGKGSSAVGL-TAYITKDPETRQMVLQTGALVLADSGVCCIDEFD-------KMSDTTRSILH  430 (720)
Q Consensus       359 S~ll~~va~~~pr~~~~~g~~ss~~gl-ta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEid-------km~~~~~~~L~  430 (720)
                      |+|-+.+-.++|+.++...+-   ..+ ++.+......+...+-+|.+-+|++--+.|||-.       ...-..-++|-
T Consensus       325 tqLy~iL~~Llpas~~~pmti---e~lNta~f~PkkDyetNrLvsgvLQlapgThLVLDETeLqqGtLn~vGvhnvq~Ls  401 (543)
T KOG2545|consen  325 TQLYSILRPLLPASVIQPMTI---EELNTAPFYPKKDYETNRLVSGVLQLAPGTHLVLDETELQQGTLNDVGVHNVQFLS  401 (543)
T ss_pred             HHHHHHHHHhchhhheeeeeH---HhhcccCccccccccccccccceeecCCCceEEeehhhcCCCccCccchhhHHHHH
Confidence            556666666777765543221   111 1222222233344577899999999999999952       22223456788


Q ss_pred             HHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eE--EEecCCChHHHHHHHHh
Q psy17703        431 EVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LI--FLLLDPQSEQFDARLAR  506 (720)
Q Consensus       431 e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li--~~l~d~~~~~~d~~la~  506 (720)
                      ..+++|.+..--.--....++++.++-.+.   |+.          .||..+-=|.+  .+  ..+.-|+          
T Consensus       402 nLI~~Qkl~ydfqyyqme~~~nv~vlIlSe---Grs----------ilPADl~i~lqp~~v~~le~~tps----------  458 (543)
T KOG2545|consen  402 NLISQQKLTYDFQYYQMEVHSNVRVLILSE---GRS----------ILPADLGIRLQPDSVDTLEFPTPS----------  458 (543)
T ss_pred             HHhhccccceecceEEEEeccCceEEEeeC---Ccc----------cCcccccccCCCCCCCccccCChh----------
Confidence            888998877633333445566665555442   210          13332111111  00  1111121          


Q ss_pred             hcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHH
Q psy17703        507 HLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDE  586 (720)
Q Consensus       507 ~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~  586 (720)
                        +....|.|+..+|. ..-.+++|..+.+.+-|++||+.....     ..-.|..++-+|+-.++..++..+..+|-..
T Consensus       459 --~l~q~rcyltt~r~-l~~nIsee~t~~iq~dfV~mRq~n~~s-----naddLs~lLv~sRlls~S~G~ttlsre~wq~  530 (543)
T KOG2545|consen  459 --DLLQFRCYLTTMRN-LRANISEEMTDYIQSDFVSMRQYNKES-----NADDLSLLLVCSRLLSKSFGRTTLSREDWQA  530 (543)
T ss_pred             --HHHHHHHHHHHHHh-hccCccHHHHHHHHHHHHHHHhhCccc-----chhHHHHHHHHHHHHHHhhccchhhHHHHHH
Confidence              23356888888885 688899999999999999999965432     2367888999999999999999999999999


Q ss_pred             HHHHH
Q psy17703        587 AWRLH  591 (720)
Q Consensus       587 Ai~l~  591 (720)
                      |.+|-
T Consensus       531 a~ele  535 (543)
T KOG2545|consen  531 ARELE  535 (543)
T ss_pred             HHHHH
Confidence            98873

>KOG0735|consensus

Probab=96.19  E-value=0.051  Score=62.75  Aligned_cols=137  Identities=19%  Similarity=0.277  Sum_probs=70.3

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCcc-----ccCCccccccccceeecCccccceeeecceeeecCCceeecccc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQY-----TSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEF  418 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-----~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEi  418 (720)
                      ..-||||.|++|+|||.|++++++......+     .++.....-.+. . .+. .-..+..++  + .-...|+++|++
T Consensus       430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e-~-iQk-~l~~vfse~--~-~~~PSiIvLDdl  503 (952)
T KOG0735|consen  430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE-K-IQK-FLNNVFSEA--L-WYAPSIIVLDDL  503 (952)
T ss_pred             ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH-H-HHH-HHHHHHHHH--H-hhCCcEEEEcch
Confidence            4569999999999999999999987643221     222111110000 0 000 000010000  0 012467888888


Q ss_pred             ccCChH---------H-HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cc
Q psy17703        419 DKMSDT---------T-RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RF  486 (720)
Q Consensus       419 dkm~~~---------~-~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RF  486 (720)
                      |.+-..         . -+.|..++.|-..      +..+.+....+||+.+...             .|++-|.|  +|
T Consensus       504 d~l~~~s~~e~~q~~~~~~rla~flnqvi~------~y~~~~~~ia~Iat~qe~q-------------tl~~~L~s~~~F  564 (952)
T KOG0735|consen  504 DCLASASSNENGQDGVVSERLAAFLNQVIK------IYLKRNRKIAVIATGQELQ-------------TLNPLLVSPLLF  564 (952)
T ss_pred             hhhhccCcccCCcchHHHHHHHHHHHHHHH------HHHccCcEEEEEEechhhh-------------hcChhhcCccce
Confidence            776430         1 1122222222111      1233455678999887432             23333333  89


Q ss_pred             eeEEEecCCChHHHHHHHH
Q psy17703        487 DLIFLLLDPQSEQFDARLA  505 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la  505 (720)
                      +.++.+..|...++.+.|.
T Consensus       565 q~~~~L~ap~~~~R~~IL~  583 (952)
T KOG0735|consen  565 QIVIALPAPAVTRRKEILT  583 (952)
T ss_pred             EEEEecCCcchhHHHHHHH
Confidence            9888888887665544443

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=96.16  E-value=0.022  Score=60.93  Aligned_cols=130  Identities=16%  Similarity=0.223  Sum_probs=75.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCc---cccCCcccccc-cc--ceeecCcccc----ceeeecceeeecCCceeecc
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQ---YTSGKGSSAVG-LT--AYITKDPETR----QMVLQTGALVLADSGVCCID  416 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~---~~~g~~ss~~g-lt--a~~~~~~~~~----~~~~~~G~l~lad~gI~~ID  416 (720)
                      -.||+|+.|.||+++++++++.+-...   ...+....... ..  .....-....    ...+.|  +..++..|++||
T Consensus        20 aYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~--~~~~~~KvvII~   97 (299)
T PRK07132         20 SFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSS--FVQSQKKILIIK   97 (299)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCC--cccCCceEEEEe
Confidence            345999999999999999998762110   00000000000 00  0000000000    011111  111256799999


Q ss_pred             ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEe-cccCCCCCCCCCcccccccCCChhhhccceeEEEecCC
Q psy17703        417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILA-AANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDP  495 (720)
Q Consensus       417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iia-aaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~  495 (720)
                      +.++|+....++|+..||+-             |..+.+|- +.||.              .+.+++.||+- ++.+.++
T Consensus        98 ~~e~m~~~a~NaLLK~LEEP-------------p~~t~~il~~~~~~--------------kll~TI~SRc~-~~~f~~l  149 (299)
T PRK07132         98 NIEKTSNSLLNALLKTIEEP-------------PKDTYFLLTTKNIN--------------KVLPTIVSRCQ-VFNVKEP  149 (299)
T ss_pred             cccccCHHHHHHHHHHhhCC-------------CCCeEEEEEeCChH--------------hChHHHHhCeE-EEECCCC
Confidence            99999999999999999863             33344443 44542              48899999996 6788877


Q ss_pred             ChHHHHHHHHh
Q psy17703        496 QSEQFDARLAR  506 (720)
Q Consensus       496 ~~~~~d~~la~  506 (720)
                      +.++....+..
T Consensus       150 ~~~~l~~~l~~  160 (299)
T PRK07132        150 DQQKILAKLLS  160 (299)
T ss_pred             CHHHHHHHHHH
Confidence            77766555543

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=96.15  E-value=0.012  Score=56.33  Aligned_cols=25  Identities=24%  Similarity=0.562  Sum_probs=22.7

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      .+.|++.|+||+|||+++..+++.+
T Consensus         5 ~mki~ITG~PGvGKtTl~~ki~e~L   29 (179)
T COG1618           5 AMKIFITGRPGVGKTTLVLKIAEKL   29 (179)
T ss_pred             ceEEEEeCCCCccHHHHHHHHHHHH
Confidence            5789999999999999999999766

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=96.13  E-value=0.002  Score=70.61  Aligned_cols=27  Identities=30%  Similarity=0.531  Sum_probs=24.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      .-.+.|+|++|+|||+|+-.....+|.
T Consensus        62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp~   88 (362)
T PF03969_consen   62 PKGLYLWGPVGRGKTMLMDLFYDSLPI   88 (362)
T ss_pred             CceEEEECCCCCchhHHHHHHHHhCCc
Confidence            357999999999999999999998874

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>PRK05818 DNA polymerase III subunit delta'; Validated

Probab=96.11  E-value=0.021  Score=59.34  Aligned_cols=122  Identities=16%  Similarity=0.185  Sum_probs=67.9

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCc--cccCCccc------cccccceeecCcc-------cccee--eecceeeec
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQ--YTSGKGSS------AVGLTAYITKDPE-------TRQMV--LQTGALVLA  408 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~--~~~g~~ss------~~glta~~~~~~~-------~~~~~--~~~G~l~la  408 (720)
                      +-.||+|++|+||..+|.++++.+-...  -.+|.=.+      ..+-....+.+..       .++..  +..-.+..+
T Consensus         8 HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~~   87 (261)
T PRK05818          8 HPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVESN   87 (261)
T ss_pred             cceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhcC
Confidence            5689999999999999999998653211  00111000      0000000100000       00000  000010112


Q ss_pred             CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceE-EEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703        409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTS-ILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD  487 (720)
Q Consensus       409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~-iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd  487 (720)
                      ...|++|+++++|+....++|+..+|+-             |.++. ++.|.||.              +++++++||+-
T Consensus        88 ~~KV~II~~ae~m~~~AaNaLLK~LEEP-------------p~~t~fiLit~~~~--------------~lLpTI~SRCq  140 (261)
T PRK05818         88 GKKIYIIYGIEKLNKQSANSLLKLIEEP-------------PKNTYGIFTTRNEN--------------NILNTILSRCV  140 (261)
T ss_pred             CCEEEEeccHhhhCHHHHHHHHHhhcCC-------------CCCeEEEEEECChH--------------hCchHhhhhee
Confidence            3469999999999999999999999863             22333 44444443              58999999985


Q ss_pred             eEEEecCC
Q psy17703        488 LIFLLLDP  495 (720)
Q Consensus       488 li~~l~d~  495 (720)
                       .+.+..+
T Consensus       141 -~~~~~~~  147 (261)
T PRK05818        141 -QYVVLSK  147 (261)
T ss_pred             -eeecCCh
Confidence             4445433

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=96.01  E-value=0.0089  Score=65.06  Aligned_cols=65  Identities=23%  Similarity=0.371  Sum_probs=60.9

Q ss_pred             hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCCCC
Q psy17703        654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQW  718 (720)
Q Consensus       654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~~~  718 (720)
                      .|.+..++.|+.++||+..++++....++++|+++.+++.+.|...+++++..++|+.||..|.+
T Consensus       137 ~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l  201 (350)
T CHL00081        137 PGLLAKANRGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGEL  201 (350)
T ss_pred             CCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCC
Confidence            56677889999999999999999999999999999999999999999999999999999998865

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=96.01  E-value=0.0094  Score=64.63  Aligned_cols=65  Identities=23%  Similarity=0.379  Sum_probs=60.2

Q ss_pred             hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCCCC
Q psy17703        654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQW  718 (720)
Q Consensus       654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~~~  718 (720)
                      .|.+..+++|+.++||++.++++...++.++|++..+.+...|...+++++..++|+.||..|.+
T Consensus       121 ~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l  185 (334)
T PRK13407        121 PGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGEL  185 (334)
T ss_pred             CCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCC
Confidence            56677788899999999999999999999999999999999999999999999999999987653

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=95.93  E-value=0.01  Score=64.39  Aligned_cols=65  Identities=25%  Similarity=0.378  Sum_probs=60.1

Q ss_pred             hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCCCC
Q psy17703        654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQW  718 (720)
Q Consensus       654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~~~  718 (720)
                      .|.+..+++|+.++||+..|+++....|+++|+++.+.+...|...+++++..++|+.||..|.+
T Consensus       124 ~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l  188 (337)
T TIGR02030       124 PGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGEL  188 (337)
T ss_pred             cCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCC
Confidence            46677788999999999999999999999999999999999999999999999999999998754

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=95.77  E-value=0.012  Score=68.81  Aligned_cols=62  Identities=21%  Similarity=0.345  Sum_probs=58.2

Q ss_pred             hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCC
Q psy17703        654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD  715 (720)
Q Consensus       654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~  715 (720)
                      .|.+..+++|+.++||+..++++....|+++|+++.+++.+.|...++++++.|||+.||..
T Consensus        77 ~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e  138 (589)
T TIGR02031        77 PGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAE  138 (589)
T ss_pred             CCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcc
Confidence            45567788899999999999999999999999999999999999999999999999999986

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species

Probab=95.62  E-value=0.037  Score=60.12  Aligned_cols=120  Identities=19%  Similarity=0.187  Sum_probs=68.3

Q ss_pred             cCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeecccccc
Q psy17703        341 ETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK  420 (720)
Q Consensus       341 E~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk  420 (720)
                      ..|..-=++|+|||+||||++.-.+.+.+...+..-....|               .+-+.|    |++..|.+||+...
T Consensus       258 g~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns~S---------------hFWLqP----L~d~Ki~llDDAT~  318 (432)
T PF00519_consen  258 GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---------------HFWLQP----LADAKIALLDDATY  318 (432)
T ss_dssp             TBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGTTS---------------CGGGGG----GCT-SSEEEEEE-H
T ss_pred             CCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEEecCCCC---------------cccccc----hhcCcEEEEcCCcc
Confidence            35666789999999999999999988877533332222222               233343    67888999999854


Q ss_pred             CChHHH-HHHHHHHHhceEeeec---cCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEec
Q psy17703        421 MSDTTR-SILHEVMEQQTLSIAK---AGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLL  493 (720)
Q Consensus       421 m~~~~~-~~L~e~mE~~~vsi~k---~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~  493 (720)
                      --=+.. ..|+.+|+...+++..   +-.....|.   ++-|+|-....-+.          -.-|.||.- .|.+.
T Consensus       319 ~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PP---LlITsN~dv~~~~~----------~~YLhSRi~-~f~F~  381 (432)
T PF00519_consen  319 PCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPP---LLITSNIDVKKDDR----------WKYLHSRIT-CFEFP  381 (432)
T ss_dssp             HHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE------EEEEESS-TTTSCC----------CHHHCTTEE-EEE--
T ss_pred             cHHHHHHHHHHhccCCCeeeeeccCCCceEeecCc---eEEecCCCCCcchh----------hhhhhheEE-EEEcC
Confidence            332222 3477888888898852   333334443   45667744322111          145677775 45544

The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.

>PF13173 AAA_14: AAA domain

Probab=95.47  E-value=0.013  Score=54.31  Aligned_cols=81  Identities=21%  Similarity=0.269  Sum_probs=44.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC---CCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP---RSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p---r~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      --++|.|+.|+|||++++.+++...   +..|.+........+.     +...-+...+.   ......++||||++.++
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~i~iDEiq~~~   74 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA-----DPDLLEYFLEL---IKPGKKYIFIDEIQYLP   74 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh-----hhhhHHHHHHh---hccCCcEEEEehhhhhc
Confidence            3589999999999999998887543   2233322211111100     00000011110   01146789999999998


Q ss_pred             hHHHHHHHHHHHh
Q psy17703        423 DTTRSILHEVMEQ  435 (720)
Q Consensus       423 ~~~~~~L~e~mE~  435 (720)
                      . ....+....+.
T Consensus        75 ~-~~~~lk~l~d~   86 (128)
T PF13173_consen   75 D-WEDALKFLVDN   86 (128)
T ss_pred             c-HHHHHHHHHHh
Confidence            5 44556555553

>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI

Probab=95.44  E-value=0.048  Score=48.10  Aligned_cols=37  Identities=19%  Similarity=0.296  Sum_probs=34.0

Q ss_pred             ccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703        554 SAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL  590 (720)
Q Consensus       554 ~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l  590 (720)
                      .+|.|....++|+|+++|+|.+++.|+.+|+.+|+.+
T Consensus        59 ~lS~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~y   95 (96)
T PF13335_consen   59 NLSARGYHRILRVARTIADLEGSERITREHIAEALSY   95 (96)
T ss_pred             CcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHhC
Confidence            3567999999999999999999999999999999763

>PRK04296 thymidine kinase; Provisional

Probab=95.42  E-value=0.063  Score=53.53  Aligned_cols=22  Identities=18%  Similarity=-0.005  Sum_probs=17.4

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      ++++||||+|||+++..++..+
T Consensus         5 ~litG~~GsGKTT~~l~~~~~~   26 (190)
T PRK04296          5 EFIYGAMNSGKSTELLQRAYNY   26 (190)
T ss_pred             EEEECCCCCHHHHHHHHHHHHH
Confidence            5789999999998876665543

>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain

Probab=95.42  E-value=0.13  Score=55.15  Aligned_cols=125  Identities=14%  Similarity=0.182  Sum_probs=71.7

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT  424 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~  424 (720)
                      ..=++|+|+.|+|||++++.+..+++....+ ..  +...+.. .    ....+    +.-.+...-+++.||+..-...
T Consensus        76 ~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~-~~--~~~~~~~-~----~~~~f----~~a~l~gk~l~~~~E~~~~~~~  143 (304)
T TIGR01613        76 QKLFFLYGNGGNGKSTFQNLLSNLLGDYATT-AV--ASLKMNE-F----QEHRF----GLARLEGKRAVIGDEVQKGYRD  143 (304)
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHhChhhcc-CC--cchhhhh-c----cCCCc----hhhhhcCCEEEEecCCCCCccc
Confidence            3458899999999999999998888642210 00  0000100 0    00011    1112344567888998653333


Q ss_pred             HHHHHHHHHHhceEeeeccCe-EEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEe
Q psy17703        425 TRSILHEVMEQQTLSIAKAGI-ICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLL  492 (720)
Q Consensus       425 ~~~~L~e~mE~~~vsi~k~g~-~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l  492 (720)
                      ..+.|..+.....+++.+.+. .......+.++.++|..+.-.          .-+.++.+|+- ++.+
T Consensus       144 ~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~----------~~~~a~~RR~~-vi~f  201 (304)
T TIGR01613       144 DESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIR----------GFDGGIKRRLR-IIPF  201 (304)
T ss_pred             cHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccC----------CCChhheeeEE-EEec
Confidence            345566666666777764443 344455678899999655221          23568889994 4444

This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=95.42  E-value=0.012  Score=55.19  Aligned_cols=23  Identities=39%  Similarity=0.709  Sum_probs=21.0

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      |+++|+||+|||++++.+++.++
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~~   24 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRLG   24 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHST
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC
Confidence            78999999999999999997765

...

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=95.39  E-value=0.026  Score=64.82  Aligned_cols=91  Identities=13%  Similarity=0.159  Sum_probs=49.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccc-------c---ccccc----eeecCccccceeeec---------
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSS-------A---VGLTA----YITKDPETRQMVLQT---------  402 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss-------~---~glta----~~~~~~~~~~~~~~~---------  402 (720)
                      .-+||.||||+|||++++.+++.+...+........       .   .+...    ...+-....++.++.         
T Consensus        46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~  125 (519)
T PF03215_consen   46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMS  125 (519)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence            368889999999999999999987443322111111       0   00000    000101112221221         


Q ss_pred             ceeeecCCceeeccccccCChHHHHHHHHHHHhc
Q psy17703        403 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQ  436 (720)
Q Consensus       403 G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~  436 (720)
                      |.-.....-|++|+|+..+.......++++|++-
T Consensus       126 g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~  159 (519)
T PF03215_consen  126 GSNSSSNKKVILVEDLPNVFHRDTSRFREALRQY  159 (519)
T ss_pred             CCCcCCCceEEEeeccccccchhHHHHHHHHHHH
Confidence            1111234568999999876655557888887654

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=95.36  E-value=0.012  Score=53.64  Aligned_cols=22  Identities=32%  Similarity=0.594  Sum_probs=20.5

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      |++.|+||+|||++++.+++.+
T Consensus         2 I~I~G~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    2 IIISGPPGSGKSTLAKELAERL   23 (121)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999865

...

>PRK04040 adenylate kinase; Provisional

Probab=95.29  E-value=0.075  Score=52.94  Aligned_cols=24  Identities=21%  Similarity=0.466  Sum_probs=22.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .|+++|.||+|||++++.+++.++
T Consensus         4 ~i~v~G~pG~GKtt~~~~l~~~l~   27 (188)
T PRK04040          4 VVVVTGVPGVGKTTVLNKALEKLK   27 (188)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHhc
Confidence            589999999999999999998875

>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases

Probab=95.26  E-value=0.035  Score=56.75  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=18.8

Q ss_pred             EEEEcCCCCHHHHHHHHHHhh
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~  368 (720)
                      +++.|.||+|||++++.+...
T Consensus         1 ~vv~G~pGsGKSt~i~~~~~~   21 (234)
T PF01443_consen    1 IVVHGVPGSGKSTLIKKLLKD   21 (234)
T ss_pred             CEEEcCCCCCHHHHHHHHHHh
Confidence            468999999999999998876

Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=95.19  E-value=0.14  Score=54.34  Aligned_cols=58  Identities=24%  Similarity=0.301  Sum_probs=42.9

Q ss_pred             CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCce-EEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703        409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNART-SILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD  487 (720)
Q Consensus       409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~-~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd  487 (720)
                      ...|++||++|+|+....++|+..+|+-             |.++ .|+.|.||.              .+.|++.||+-
T Consensus       104 ~~kV~II~~ad~m~~~AaNaLLKtLEEP-------------p~~t~~iL~t~~~~--------------~lLpTI~SRcq  156 (290)
T PRK07276        104 KQQVFIIKDADKMHVNAANSLLKVIEEP-------------QSEIYIFLLTNDEN--------------KVLPTIKSRTQ  156 (290)
T ss_pred             CcEEEEeehhhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh--------------hCchHHHHcce
Confidence            4569999999999999999999999863             2223 344454543              48899999996


Q ss_pred             eEEEecC
Q psy17703        488 LIFLLLD  494 (720)
Q Consensus       488 li~~l~d  494 (720)
                       ++.+..
T Consensus       157 -~i~f~~  162 (290)
T PRK07276        157 -IFHFPK  162 (290)
T ss_pred             -eeeCCC
Confidence             455544

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=95.12  E-value=0.01  Score=65.11  Aligned_cols=23  Identities=30%  Similarity=0.381  Sum_probs=20.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      -+++.|.||||||.||-.+++.+
T Consensus         3 v~~I~G~aGTGKTvla~~l~~~l   25 (352)
T PF09848_consen    3 VILITGGAGTGKTVLALNLAKEL   25 (352)
T ss_pred             EEEEEecCCcCHHHHHHHHHHHh
Confidence            37899999999999999988876

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=95.06  E-value=0.1  Score=53.59  Aligned_cols=199  Identities=19%  Similarity=0.184  Sum_probs=111.7

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCcc----ccCCccccccccceeecCccc-cceeee-------cceeee----
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQY----TSGKGSSAVGLTAYITKDPET-RQMVLQ-------TGALVL----  407 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~----~~g~~ss~~glta~~~~~~~~-~~~~~~-------~G~l~l----  407 (720)
                      +..-+.++|+-|+|||.+.|++...++....    ......+..++.....-+-.. ..|...       .+...+    
T Consensus        50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g  129 (269)
T COG3267          50 GQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKG  129 (269)
T ss_pred             CCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhC
Confidence            4456889999999999999977776654322    111122222222111111000 011110       000001    


Q ss_pred             cCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCC--Chhhhcc
Q psy17703        408 ADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRL--PHTLLSR  485 (720)
Q Consensus       408 ad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l--~~aLlsR  485 (720)
                      ..+-++++||...+..+..++|.-.++--.-+          ....+++-..-|.-..         ..++  -..+-.|
T Consensus       130 ~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~----------~~~l~ivL~Gqp~L~~---------~lr~~~l~e~~~R  190 (269)
T COG3267         130 KRPVVLMVDEAHDLNDSALEALRLLTNLEEDS----------SKLLSIVLIGQPKLRP---------RLRLPVLRELEQR  190 (269)
T ss_pred             CCCeEEeehhHhhhChhHHHHHHHHHhhcccc----------cCceeeeecCCcccch---------hhchHHHHhhhhe
Confidence            01236899999999999988888776532111          1124444444444311         0011  1345569


Q ss_pred             ceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703        486 FDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR  565 (720)
Q Consensus       486 Fdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir  565 (720)
                      +++.|.+.+..+++...         .++-.+..| ..-.|.+++++...+...     ..        ..||....+..
T Consensus       191 ~~ir~~l~P~~~~~t~~---------yl~~~Le~a-~~~~~l~~~~a~~~i~~~-----sq--------g~P~lin~~~~  247 (269)
T COG3267         191 IDIRIELPPLTEAETGL---------YLRHRLEGA-GLPEPLFSDDALLLIHEA-----SQ--------GIPRLINNLAT  247 (269)
T ss_pred             EEEEEecCCcChHHHHH---------HHHHHHhcc-CCCcccCChhHHHHHHHH-----hc--------cchHHHHHHHH
Confidence            99888887776554322         233334444 234678888888877632     11        25799999999


Q ss_pred             HHHHHHHHcCCCCCCHHhH
Q psy17703        566 LSEAHAKMRYSETVEVQDV  584 (720)
Q Consensus       566 la~A~A~l~~~~~V~~~Dv  584 (720)
                      +|.-.|...+.+.|+...+
T Consensus       248 ~Al~~a~~a~~~~v~~a~~  266 (269)
T COG3267         248 LALDAAYSAGEDGVSEAEI  266 (269)
T ss_pred             HHHHHHHHcCCCccchhhc
Confidence            9999888888888776544

>KOG3347|consensus

Probab=94.88  E-value=0.018  Score=54.24  Aligned_cols=26  Identities=38%  Similarity=0.511  Sum_probs=23.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .-|||+.|-||||||++++.+|+.+.
T Consensus         7 ~PNILvtGTPG~GKstl~~~lae~~~   32 (176)
T KOG3347|consen    7 RPNILVTGTPGTGKSTLAERLAEKTG   32 (176)
T ss_pred             CCCEEEeCCCCCCchhHHHHHHHHhC
Confidence            46999999999999999999997654

>PHA00729 NTP-binding motif containing protein

Probab=94.83  E-value=0.019  Score=58.57  Aligned_cols=26  Identities=19%  Similarity=0.240  Sum_probs=23.0

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      +-.+++|+|+||||||+|+..+++.+
T Consensus        16 ~f~nIlItG~pGvGKT~LA~aLa~~l   41 (226)
T PHA00729         16 GFVSAVIFGKQGSGKTTYALKVARDV   41 (226)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34699999999999999999999865

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=94.78  E-value=0.017  Score=57.94  Aligned_cols=92  Identities=18%  Similarity=0.152  Sum_probs=44.8

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCC---Cc-cccCCccccc------cccceeecCcccc-ceeeecceeeecCCce
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPR---SQ-YTSGKGSSAV------GLTAYITKDPETR-QMVLQTGALVLADSGV  412 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr---~~-~~~g~~ss~~------glta~~~~~~~~~-~~~~~~G~l~lad~gI  412 (720)
                      ++--.++.|+||||||++++.+.+.+..   .+ .....+....      +..+..+...... ......+...+....+
T Consensus        17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~v   96 (196)
T PF13604_consen   17 GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDV   96 (196)
T ss_dssp             TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSE
T ss_pred             CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccE
Confidence            3445778899999999999988775521   11 1111100000      0000000000000 0000001111344569


Q ss_pred             eeccccccCChHHHHHHHHHHHh
Q psy17703        413 CCIDEFDKMSDTTRSILHEVMEQ  435 (720)
Q Consensus       413 ~~IDEidkm~~~~~~~L~e~mE~  435 (720)
                      ++|||...++......|++..+.
T Consensus        97 liVDEasmv~~~~~~~ll~~~~~  119 (196)
T PF13604_consen   97 LIVDEASMVDSRQLARLLRLAKK  119 (196)
T ss_dssp             EEESSGGG-BHHHHHHHHHHS-T
T ss_pred             EEEecccccCHHHHHHHHHHHHh
Confidence            99999999999887777776543

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=94.73  E-value=0.043  Score=63.28  Aligned_cols=26  Identities=31%  Similarity=0.544  Sum_probs=23.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +-++|+.|++|+|||+|+|+++.+=|
T Consensus       419 G~~llI~G~SG~GKTsLlRaiaGLWP  444 (604)
T COG4178         419 GERLLITGESGAGKTSLLRALAGLWP  444 (604)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCc
Confidence            45899999999999999999999765

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=94.71  E-value=0.034  Score=41.06  Aligned_cols=30  Identities=23%  Similarity=0.582  Sum_probs=26.0

Q ss_pred             eeecccCCceeeeeeccCcccCCccCCCCCC
Q psy17703        288 FFRCIVCNYSTTVEIDRGRIHEPTLCTNCST  318 (720)
Q Consensus       288 ~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~  318 (720)
                      .|+|.+||+...+...... ..+..||.|+.
T Consensus         5 ey~C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~   34 (42)
T PF09723_consen    5 EYRCEECGHEFEVLQSISE-DDPVPCPECGS   34 (42)
T ss_pred             EEEeCCCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence            5999999999988876656 78899999997

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=94.66  E-value=0.023  Score=57.36  Aligned_cols=27  Identities=30%  Similarity=0.462  Sum_probs=25.2

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +..|.|+.||||+|||+++|-+++++.
T Consensus       136 g~lntLiigpP~~GKTTlLRdiaR~~s  162 (308)
T COG3854         136 GWLNTLIIGPPQVGKTTLLRDIARLLS  162 (308)
T ss_pred             CceeeEEecCCCCChHHHHHHHHHHhh
Confidence            788999999999999999999999774

>PRK14532 adenylate kinase; Provisional

Probab=94.64  E-value=0.027  Score=55.75  Aligned_cols=24  Identities=21%  Similarity=0.331  Sum_probs=22.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +|+|+|+||+|||++++.+++...
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g   25 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERG   25 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            699999999999999999998765

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=94.56  E-value=0.026  Score=51.52  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=20.5

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      |+|.|.||+|||++++++++.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999876

...

>KOG2170|consensus

Probab=94.49  E-value=0.013  Score=61.28  Aligned_cols=87  Identities=17%  Similarity=0.221  Sum_probs=55.7

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccc---eee-----ecceeeecCCceeecc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQ---MVL-----QTGALVLADSGVCCID  416 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~---~~~-----~~G~l~lad~gI~~ID  416 (720)
                      ..-+=|.|.|||||+..++.+++.+    |..|..|..+....+...-|....   +..     -.|.+..-+..+.++|
T Consensus       110 PLvLSfHG~tGTGKN~Va~iiA~n~----~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFD  185 (344)
T KOG2170|consen  110 PLVLSFHGWTGTGKNYVAEIIAENL----YRGGLRSPFVHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFD  185 (344)
T ss_pred             CeEEEecCCCCCchhHHHHHHHHHH----HhccccchhHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEec
Confidence            3556689999999998888887644    445555555544333221111100   000     0233334567899999


Q ss_pred             ccccCChHHHHHHHHHHHh
Q psy17703        417 EFDKMSDTTRSILHEVMEQ  435 (720)
Q Consensus       417 Eidkm~~~~~~~L~e~mE~  435 (720)
                      |.|||++...+.|...++.
T Consensus       186 E~DKmp~gLld~lkpfLdy  204 (344)
T KOG2170|consen  186 EVDKLPPGLLDVLKPFLDY  204 (344)
T ss_pred             hhhhcCHhHHHHHhhhhcc
Confidence            9999999999999888874

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=94.47  E-value=0.043  Score=60.16  Aligned_cols=64  Identities=23%  Similarity=0.389  Sum_probs=60.0

Q ss_pred             hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCCC
Q psy17703        654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQ  717 (720)
Q Consensus       654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~~  717 (720)
                      -|.+..++.|+..+||..-+.+....+|+++++...-.+-..|+.-+.+|+..++|++||..|.
T Consensus       137 PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGe  200 (423)
T COG1239         137 PGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGE  200 (423)
T ss_pred             CcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccc
Confidence            5777889999999999999999999999999999888888999999999999999999999885

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=94.35  E-value=0.031  Score=55.11  Aligned_cols=24  Identities=33%  Similarity=0.488  Sum_probs=22.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .|++.|+||+|||++++.+++.++
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~   25 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLG   25 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999865

>PRK13947 shikimate kinase; Provisional

Probab=94.34  E-value=0.036  Score=53.85  Aligned_cols=27  Identities=30%  Similarity=0.234  Sum_probs=23.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCc
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQ  373 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~  373 (720)
                      ||+|+|+||+|||++++.+++.+....
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~   29 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGF   29 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence            799999999999999999999876433

>PRK08118 topology modulation protein; Reviewed

Probab=94.33  E-value=0.032  Score=54.39  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=21.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .|+++|+||+|||++++.+++.+.
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~   26 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLN   26 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999998764

>PRK00131 aroK shikimate kinase; Reviewed

Probab=94.16  E-value=0.047  Score=52.87  Aligned_cols=27  Identities=26%  Similarity=0.203  Sum_probs=24.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      ..+|+|+|+||+|||++++.+++.+..
T Consensus         4 ~~~i~l~G~~GsGKstla~~La~~l~~   30 (175)
T PRK00131          4 GPNIVLIGFMGAGKSTIGRLLAKRLGY   30 (175)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            468999999999999999999998753

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=94.12  E-value=0.04  Score=52.27  Aligned_cols=24  Identities=25%  Similarity=0.311  Sum_probs=21.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +|+|+|+||+|||++++.+++.+.
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~   24 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALG   24 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999998764

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=94.01  E-value=0.045  Score=44.96  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=20.2

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      +.+.|+||+|||++++.+++.+
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999999875

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=93.90  E-value=0.048  Score=53.58  Aligned_cols=23  Identities=17%  Similarity=0.405  Sum_probs=20.9

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      |+++|+||+|||++++.+++...
T Consensus         2 i~i~G~pGsGKst~a~~la~~~~   24 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENFG   24 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            68999999999999999998664

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK03839 putative kinase; Provisional

Probab=93.88  E-value=0.045  Score=53.83  Aligned_cols=24  Identities=21%  Similarity=0.396  Sum_probs=22.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .|+|.|+||+|||++++.+++.+.
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~   25 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLG   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999764

>PRK14530 adenylate kinase; Provisional

Probab=93.81  E-value=0.051  Score=55.17  Aligned_cols=25  Identities=32%  Similarity=0.380  Sum_probs=22.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .+|+|+|+||+|||++++.+++...
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~~   28 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEFG   28 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4799999999999999999998775

>PF13245 AAA_19: Part of AAA domain

Probab=93.77  E-value=0.053  Score=45.61  Aligned_cols=23  Identities=30%  Similarity=0.557  Sum_probs=16.5

Q ss_pred             cEEEEcCCCCHHH-HHHHHHHhhC
Q psy17703        347 NILLCGDPGTSKS-QLLSYVYDLV  369 (720)
Q Consensus       347 ~vLL~G~PGtGKS-~ll~~va~~~  369 (720)
                      -+++.|+|||||| ++++.++.+.
T Consensus        12 ~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   12 LFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            3556999999999 4555565544

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=93.74  E-value=0.045  Score=55.30  Aligned_cols=26  Identities=27%  Similarity=0.445  Sum_probs=18.8

Q ss_pred             CCcc-EEEEcCCCCHHHHHHHHHHhhC
Q psy17703        344 AEIN-ILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       344 g~i~-vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      ..-+ .++.||||||||+++..+...+
T Consensus        15 ~~~~~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   15 SSNGITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             TSSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEECCCCCChHHHHHHHHHHh
Confidence            3445 8999999999998776665544

>PRK00625 shikimate kinase; Provisional

Probab=93.68  E-value=0.049  Score=53.47  Aligned_cols=24  Identities=25%  Similarity=0.506  Sum_probs=22.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ||+|+|.||+|||++++.+++.+.
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~   25 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLS   25 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            799999999999999999998764

>KOG3595|consensus

Probab=93.67  E-value=0.12  Score=66.62  Aligned_cols=144  Identities=19%  Similarity=0.208  Sum_probs=79.3

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhC-CCCccccCCccccccccceeecCccccc-eeeecceeeec--CCceeecccccc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLV-PRSQYTSGKGSSAVGLTAYITKDPETRQ-MVLQTGALVLA--DSGVCCIDEFDK  420 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~-pr~~~~~g~~ss~~glta~~~~~~~~~~-~~~~~G~l~la--d~gI~~IDEidk  420 (720)
                      ...++++|+||+|||.++....... ++.++.  ...+.. .+....+.-.... ....++...-.  ..-++|+||++-
T Consensus       127 ~k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~--~~fs~~-ts~~~~q~~~~~~~~k~~~~~~~~~~~~~~~~f~ddinm  203 (1395)
T KOG3595|consen  127 GKPVLLVGPTGTGKTVLVLSELRSLQDREVYL--LNFSSV-TSSELLQEIIESKLDKRRSGNYGPPLGKKLVLFVDDINM  203 (1395)
T ss_pred             CCeEEEEcCCCCCeeeehHHHHHhcccchheE--Eeeeee-ccHHHHHHHHHHHHHHhcccCCCCCCCceeEEEEeccCC
Confidence            4789999999999999887776644 333222  111110 0000000000000 00111111111  123789999964


Q ss_pred             CCh------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecC
Q psy17703        421 MSD------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLD  494 (720)
Q Consensus       421 m~~------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d  494 (720)
                      -..      .....+++.+|.+-+.-...+.... --++.+++|+||.+|+.+         .+++.+++.|- ++.+..
T Consensus       204 p~~~~yg~q~~~~~lrq~~e~~g~~~~~~~~~~~-i~~i~~~~a~~~~~~gr~---------~i~~r~~r~f~-~~~~~~  272 (1395)
T KOG3595|consen  204 PALDKYGDQPPIELLRQMLEHGGFYDRKKSEWVE-IENVQLVGAMNPPGGGRN---------DITERFLRHFL-IVSLNY  272 (1395)
T ss_pred             chhhhcCCccHHHHHHHHHHhceeecccccceeE-EeeeEEEeecCCCCCccC---------cccHHHHHHee-eEeeCC
Confidence            322      2366888888887665443333333 346899999998554433         47888888885 666666


Q ss_pred             CChHHHHH
Q psy17703        495 PQSEQFDA  502 (720)
Q Consensus       495 ~~~~~~d~  502 (720)
                      |..+....
T Consensus       273 ~~~~sl~~  280 (1395)
T KOG3595|consen  273 PSQESLTQ  280 (1395)
T ss_pred             CChhhHHH
Confidence            66655443

>PRK06581 DNA polymerase III subunit delta'; Validated

Probab=93.57  E-value=0.34  Score=49.76  Aligned_cols=125  Identities=10%  Similarity=0.028  Sum_probs=71.6

Q ss_pred             ccEEEEcCCC-CHHHHHHHHHHhhCCCCccccCCccccccccc--------eeecCccccceeeecc-eeeecCCceeec
Q psy17703        346 INILLCGDPG-TSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTA--------YITKDPETRQMVLQTG-ALVLADSGVCCI  415 (720)
Q Consensus       346 i~vLL~G~PG-tGKS~ll~~va~~~pr~~~~~g~~ss~~glta--------~~~~~~~~~~~~~~~G-~l~lad~gI~~I  415 (720)
                      ..-|+.|+.+ ++|..++..+++.+-......+...+..-+..        ...+-...++..-... .-..+...|++|
T Consensus        16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViII   95 (263)
T PRK06581         16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAII   95 (263)
T ss_pred             heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEEE
Confidence            4678999998 99999999988866322111111111110000        0000000000000000 001234569999


Q ss_pred             cccccCChHHHHHHHHHHHhceEeeeccCeEEeecCce-EEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecC
Q psy17703        416 DEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNART-SILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLD  494 (720)
Q Consensus       416 DEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~-~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d  494 (720)
                      +++++|+....++|+..+|+-.             .++ .++.|.|+.              .++|+++||+- .+.+..
T Consensus        96 ~~ae~mt~~AANALLKtLEEPP-------------~~t~fILit~~~~--------------~LLpTIrSRCq-~i~~~~  147 (263)
T PRK06581         96 YSAELMNLNAANSCLKILEDAP-------------KNSYIFLITSRAA--------------SIISTIRSRCF-KINVRS  147 (263)
T ss_pred             echHHhCHHHHHHHHHhhcCCC-------------CCeEEEEEeCChh--------------hCchhHhhceE-EEeCCC
Confidence            9999999999999999998642             223 345555544              48999999995 566665


Q ss_pred             CChH
Q psy17703        495 PQSE  498 (720)
Q Consensus       495 ~~~~  498 (720)
                      |...
T Consensus       148 p~~~  151 (263)
T PRK06581        148 SILH  151 (263)
T ss_pred             CCHH
Confidence            5543

>PRK07261 topology modulation protein; Provisional

Probab=93.55  E-value=0.056  Score=52.94  Aligned_cols=23  Identities=26%  Similarity=0.316  Sum_probs=20.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      .|+++|+||+|||+|++.+++.+
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~   24 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHY   24 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            48999999999999999998754

>PRK13949 shikimate kinase; Provisional

Probab=93.49  E-value=0.057  Score=52.77  Aligned_cols=24  Identities=25%  Similarity=0.254  Sum_probs=22.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +|+|+|+||+|||++++.+++.+.
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~   26 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELG   26 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            689999999999999999998775

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=93.49  E-value=0.05  Score=51.54  Aligned_cols=24  Identities=25%  Similarity=0.282  Sum_probs=21.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +++++|+||+|||+++..++..+.
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~   24 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIA   24 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999987654

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=93.43  E-value=0.047  Score=53.32  Aligned_cols=26  Identities=35%  Similarity=0.594  Sum_probs=18.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .-+++++|+||+|||++++.+...+.
T Consensus        24 ~~~~ll~G~~G~GKT~ll~~~~~~~~   49 (185)
T PF13191_consen   24 PRNLLLTGESGSGKTSLLRALLDRLA   49 (185)
T ss_dssp             ---EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999998876553

>PRK06762 hypothetical protein; Provisional

Probab=93.43  E-value=0.063  Score=51.91  Aligned_cols=24  Identities=17%  Similarity=0.385  Sum_probs=21.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -|+|+|.||+|||++++.+++.++
T Consensus         4 li~i~G~~GsGKST~A~~L~~~l~   27 (166)
T PRK06762          4 LIIIRGNSGSGKTTIAKQLQERLG   27 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999998775

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=93.28  E-value=0.067  Score=48.27  Aligned_cols=24  Identities=25%  Similarity=0.371  Sum_probs=20.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +|+++|++|+|||+|++.+.....
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~   24 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEF   24 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCC
Confidence            489999999999999999986443

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK14531 adenylate kinase; Provisional

Probab=93.26  E-value=0.073  Score=52.60  Aligned_cols=24  Identities=21%  Similarity=0.349  Sum_probs=21.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .|+++|+||+|||++++.+++...
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~g   27 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAHG   27 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999988653

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=93.17  E-value=0.075  Score=52.61  Aligned_cols=24  Identities=29%  Similarity=0.380  Sum_probs=21.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +|+++|+||+|||++++.+++...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~   24 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYG   24 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC
Confidence            489999999999999999998653

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PF05729 NACHT: NACHT domain

Probab=93.08  E-value=0.066  Score=51.06  Aligned_cols=22  Identities=32%  Similarity=0.640  Sum_probs=19.8

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      ++|.|+||+|||++++.++..+
T Consensus         3 l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999988755

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=93.08  E-value=0.072  Score=50.54  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=20.1

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      ++|.|+||+|||++++.+++.+
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~   23 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERL   23 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhc
Confidence            6899999999999999998864

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=93.07  E-value=0.064  Score=51.69  Aligned_cols=23  Identities=26%  Similarity=0.340  Sum_probs=20.7

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ++|+|+||+|||++++.+++.++
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~   23 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG   23 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC
Confidence            47899999999999999998775

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=93.05  E-value=0.086  Score=51.64  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=22.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      .|+|.|+||+|||++++.+++.++.
T Consensus         4 ~i~l~G~~gsGKst~a~~l~~~~~~   28 (175)
T cd00227           4 IIILNGGSSAGKSSIARALQSVLAE   28 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCC
Confidence            5899999999999999999988764

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=93.04  E-value=0.18  Score=46.76  Aligned_cols=51  Identities=27%  Similarity=0.429  Sum_probs=40.9

Q ss_pred             CcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCC
Q psy17703        663 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD  715 (720)
Q Consensus       663 ~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~  715 (720)
                      ++..+||+...+.+++.+++|+|++..+++  .|..+.|+..-.|+|+.||..
T Consensus        64 ~ill~DEiNrappktQsAlLeam~Er~Vt~--~g~~~~lp~pf~ViATqNp~e  114 (131)
T PF07726_consen   64 NILLADEINRAPPKTQSALLEAMEERQVTI--DGQTYPLPDPFFVIATQNPVE  114 (131)
T ss_dssp             SEEEEETGGGS-HHHHHHHHHHHHHSEEEE--TTEEEE--SS-EEEEEE-TT-
T ss_pred             ceeeecccccCCHHHHHHHHHHHHcCeEEe--CCEEEECCCcEEEEEecCccc
Confidence            456789999999999999999999988776  789999999999999999964

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK14526 adenylate kinase; Provisional

Probab=92.88  E-value=0.088  Score=53.44  Aligned_cols=24  Identities=17%  Similarity=0.455  Sum_probs=21.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +++|+|+||+|||++++.+++...
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~   25 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELN   25 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999997654

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=92.85  E-value=0.14  Score=47.91  Aligned_cols=29  Identities=24%  Similarity=0.257  Sum_probs=25.0

Q ss_pred             CCCCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        342 TPAEINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       342 ~pg~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .+.+-.++|.|+.|+|||++++.+++.+.
T Consensus        19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150        19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            34556799999999999999999999875

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=92.81  E-value=0.12  Score=57.00  Aligned_cols=92  Identities=18%  Similarity=0.228  Sum_probs=49.8

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCC---ccccCCcccc---c--cccceee-c---Cccccc-eeee---cceeee
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRS---QYTSGKGSSA---V--GLTAYIT-K---DPETRQ-MVLQ---TGALVL  407 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~---~~~~g~~ss~---~--glta~~~-~---~~~~~~-~~~~---~G~l~l  407 (720)
                      ...++++.|+.|||||.+++++...+...   +...+....+   +  |.|.... .   ...... ....   .-.-.+
T Consensus        21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~~~~~~~~~~~~~~~~l  100 (364)
T PF05970_consen   21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNEKSQCKISKNSRLRERL  100 (364)
T ss_pred             CCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccccccccccccccccchhhhhh
Confidence            45799999999999999999998866332   2211111111   1  1111100 0   000000 0000   001123


Q ss_pred             cCCceeeccccccCChHHHHHHHHHHHh
Q psy17703        408 ADSGVCCIDEFDKMSDTTRSILHEVMEQ  435 (720)
Q Consensus       408 ad~gI~~IDEidkm~~~~~~~L~e~mE~  435 (720)
                      .+-.+++|||+.-++.....++...|.+
T Consensus       101 ~~~~~lIiDEism~~~~~l~~i~~~lr~  128 (364)
T PF05970_consen  101 RKADVLIIDEISMVSADMLDAIDRRLRD  128 (364)
T ss_pred             hhheeeecccccchhHHHHHHHHHhhhh
Confidence            3446899999998888877777666643

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>PRK08233 hypothetical protein; Provisional

Probab=92.79  E-value=0.086  Score=51.52  Aligned_cols=25  Identities=16%  Similarity=0.138  Sum_probs=22.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .=|.+.|+||+|||++++.++..++
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3477899999999999999998876

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=92.76  E-value=0.073  Score=52.32  Aligned_cols=23  Identities=22%  Similarity=0.420  Sum_probs=20.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      -++++|+||+|||++++.+++.+
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVEKY   27 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999998765

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=92.68  E-value=0.09  Score=51.51  Aligned_cols=24  Identities=29%  Similarity=0.481  Sum_probs=21.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -++|+|+||+|||++++.++..++
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            378999999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK14528 adenylate kinase; Provisional

Probab=92.65  E-value=0.1  Score=51.82  Aligned_cols=24  Identities=25%  Similarity=0.515  Sum_probs=21.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ++++.|+||+|||++++.+++...
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~~   26 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERLS   26 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999987653

>PTZ00088 adenylate kinase 1; Provisional

Probab=92.64  E-value=0.099  Score=53.76  Aligned_cols=26  Identities=23%  Similarity=0.416  Sum_probs=23.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...|+|+|+||+|||++++.+++...
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~~~g   31 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSKKEN   31 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999998764

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=92.63  E-value=0.13  Score=37.41  Aligned_cols=30  Identities=20%  Similarity=0.421  Sum_probs=24.1

Q ss_pred             eeecccCCceeeeeeccCcccCCccCCCCCC
Q psy17703        288 FFRCIVCNYSTTVEIDRGRIHEPTLCTNCST  318 (720)
Q Consensus       288 ~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~  318 (720)
                      .|+|..||+.......... ..+..||.|+.
T Consensus         5 ~y~C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~   34 (41)
T smart00834        5 EYRCEDCGHTFEVLQKISD-DPLATCPECGG   34 (41)
T ss_pred             EEEcCCCCCEEEEEEecCC-CCCCCCCCCCC
Confidence            5899999998887765433 67788999996

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PRK08939 primosomal protein DnaI; Reviewed

Probab=92.63  E-value=0.077  Score=57.00  Aligned_cols=26  Identities=31%  Similarity=0.388  Sum_probs=23.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .-+++|+|+||||||.|+.++++.+.
T Consensus       156 ~~gl~L~G~~G~GKThLa~Aia~~l~  181 (306)
T PRK08939        156 VKGLYLYGDFGVGKSYLLAAIANELA  181 (306)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999998764

>TIGR01448 recD_rel helicase, putative, RecD/TraA family

Probab=92.56  E-value=0.094  Score=62.94  Aligned_cols=41  Identities=22%  Similarity=0.399  Sum_probs=29.9

Q ss_pred             ccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        330 HFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       330 ~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .+.+.|.--+.....+-.++|.|+||||||++++++.+.+.
T Consensus       323 ~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~  363 (720)
T TIGR01448       323 GLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAE  363 (720)
T ss_pred             CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            34556664444443455799999999999999999887653

This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.

>PRK06217 hypothetical protein; Validated

Probab=92.51  E-value=0.11  Score=51.29  Aligned_cols=24  Identities=17%  Similarity=0.296  Sum_probs=22.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +|+|.|.||+|||++++.+++.+.
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~   26 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLD   26 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            589999999999999999998774

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=92.45  E-value=0.095  Score=51.90  Aligned_cols=26  Identities=27%  Similarity=0.300  Sum_probs=22.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      ..+.|+||+|+|||++++.++...+.
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~~~   28 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQREQT   28 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCC
Confidence            36889999999999999999887643

>TIGR01351 adk adenylate kinases

Probab=92.41  E-value=0.11  Score=52.63  Aligned_cols=24  Identities=21%  Similarity=0.380  Sum_probs=21.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .|+++|+||+|||++++.+++...
T Consensus         1 rI~i~G~pGsGKsT~a~~La~~~g   24 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAEKYG   24 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC
Confidence            379999999999999999987654

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=92.29  E-value=0.13  Score=50.48  Aligned_cols=26  Identities=27%  Similarity=0.327  Sum_probs=23.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .-+|+|+|++|+|||++++.+++.+.
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l~   29 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQLN   29 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence            35799999999999999999998764

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=92.27  E-value=0.14  Score=39.48  Aligned_cols=30  Identities=20%  Similarity=0.466  Sum_probs=23.9

Q ss_pred             eeecccCCceeeeeeccCcccCCccCCCCCC
Q psy17703        288 FFRCIVCNYSTTVEIDRGRIHEPTLCTNCST  318 (720)
Q Consensus       288 ~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~  318 (720)
                      .|+|.+||++...+..... ..+..||.|+.
T Consensus         5 ey~C~~Cg~~fe~~~~~~~-~~~~~CP~Cg~   34 (52)
T TIGR02605         5 EYRCTACGHRFEVLQKMSD-DPLATCPECGG   34 (52)
T ss_pred             EEEeCCCCCEeEEEEecCC-CCCCCCCCCCC
Confidence            5999999998888764333 56778999997

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>PRK02496 adk adenylate kinase; Provisional

Probab=92.19  E-value=0.099  Score=51.56  Aligned_cols=24  Identities=17%  Similarity=0.380  Sum_probs=21.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .+++.|+||+|||++++.+++...
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~   26 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLH   26 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999998654

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=92.18  E-value=0.12  Score=49.99  Aligned_cols=25  Identities=36%  Similarity=0.480  Sum_probs=22.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      -+++.||.|+|||+|++.++.+.+.
T Consensus        31 ~iaitGPSG~GKStllk~va~Lisp   55 (223)
T COG4619          31 FIAITGPSGCGKSTLLKIVASLISP   55 (223)
T ss_pred             eEEEeCCCCccHHHHHHHHHhccCC
Confidence            5899999999999999999987763

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=92.13  E-value=0.12  Score=49.81  Aligned_cols=21  Identities=29%  Similarity=0.514  Sum_probs=17.7

Q ss_pred             EEEEcCCCCHHHHHHHHHHhh
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~  368 (720)
                      |.|.|.||||||+|++.+++.
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            789999999999999999976

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=92.11  E-value=0.12  Score=55.25  Aligned_cols=24  Identities=33%  Similarity=0.351  Sum_probs=21.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .+++.|+||+|||++++.+++.++
T Consensus         4 liil~G~pGSGKSTla~~L~~~~~   27 (300)
T PHA02530          4 IILTVGVPGSGKSTWAREFAAKNP   27 (300)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHCC
Confidence            478899999999999999998775

>PRK14527 adenylate kinase; Provisional

Probab=92.08  E-value=0.14  Score=50.97  Aligned_cols=25  Identities=16%  Similarity=0.272  Sum_probs=21.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      --++++|+||+|||++++.+++...
T Consensus         7 ~~i~i~G~pGsGKsT~a~~La~~~~   31 (191)
T PRK14527          7 KVVIFLGPPGAGKGTQAERLAQELG   31 (191)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3589999999999999999987553

>cd04155 Arl3 Arl3 subfamily

Probab=92.07  E-value=0.13  Score=49.74  Aligned_cols=27  Identities=22%  Similarity=0.286  Sum_probs=23.3

Q ss_pred             CCCCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        342 TPAEINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       342 ~pg~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      .+..+.++++|++|+|||+|++.+...
T Consensus        11 ~~~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155          11 SSEEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             cCCccEEEEEccCCCCHHHHHHHHhcC
Confidence            345789999999999999999999753

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit

Probab=92.05  E-value=0.16  Score=59.52  Aligned_cols=37  Identities=22%  Similarity=0.221  Sum_probs=28.4

Q ss_pred             hhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        333 DKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       333 d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      +||+.-+.-.-.+-..+|.|+||||||+++..+...+
T Consensus       148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l  184 (586)
T TIGR01447       148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLAL  184 (586)
T ss_pred             HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence            7887666555456788999999999999887766543

This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=92.04  E-value=0.077  Score=54.11  Aligned_cols=22  Identities=32%  Similarity=0.566  Sum_probs=19.5

Q ss_pred             CccEEEEcCCCCHHHHHHHHHH
Q psy17703        345 EINILLCGDPGTSKSQLLSYVY  366 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va  366 (720)
                      ...+|++|+||+|||+++++++
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~   33 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLP   33 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcC
Confidence            3569999999999999999874

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=92.01  E-value=0.098  Score=60.96  Aligned_cols=27  Identities=15%  Similarity=0.231  Sum_probs=23.6

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ....|+|+|.||+|||++++.+++.+.
T Consensus       391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~  417 (568)
T PRK05537        391 QGFTVFFTGLSGAGKSTIAKALMVKLM  417 (568)
T ss_pred             CCeEEEEECCCCChHHHHHHHHHHHhh
Confidence            345899999999999999999998764

>TIGR03263 guanyl_kin guanylate kinase

Probab=91.93  E-value=0.12  Score=50.68  Aligned_cols=25  Identities=28%  Similarity=0.465  Sum_probs=22.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      -++|+||+|+|||++++.+++..+.
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~~~~   27 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEEDPN   27 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHccCcc
Confidence            4789999999999999999987654

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=91.90  E-value=0.15  Score=41.08  Aligned_cols=23  Identities=30%  Similarity=0.489  Sum_probs=20.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      ..+|.|+.|+|||+|+.++.-++
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998765

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=91.88  E-value=0.12  Score=46.56  Aligned_cols=21  Identities=24%  Similarity=0.469  Sum_probs=19.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .|+++|.||+|||+|++++.+
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999999985

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=91.87  E-value=0.15  Score=47.77  Aligned_cols=23  Identities=22%  Similarity=0.312  Sum_probs=20.9

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      |.+.|+||+|||++++.+++.+.
T Consensus         2 I~i~G~~GsGKst~a~~la~~~~   24 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKLG   24 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            68999999999999999998764

>PRK00279 adk adenylate kinase; Reviewed

Probab=91.87  E-value=0.14  Score=51.99  Aligned_cols=24  Identities=21%  Similarity=0.477  Sum_probs=21.8

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .|+++|+||+|||++++.+++...
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~   25 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYG   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999998765

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=91.83  E-value=0.15  Score=50.24  Aligned_cols=86  Identities=14%  Similarity=0.119  Sum_probs=47.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceee-cCc-cc-cce-eeecceeeecCCceeeccccc-c
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYIT-KDP-ET-RQM-VLQTGALVLADSGVCCIDEFD-K  420 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~-~~~-~~-~~~-~~~~G~l~lad~gI~~IDEid-k  420 (720)
                      --+.|+|+.|+|||+|++.++.+.+..   +|.-. .-+...+.. +.. .+ |+. .+.-......+..++++||-. .
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~-~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~  101 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLIPN---GDNDE-WDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAY  101 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCC---CcEEE-ECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence            467899999999999999999987531   12110 001001111 111 00 110 000111123366899999975 5


Q ss_pred             CChHHHHHHHHHHHh
Q psy17703        421 MSDTTRSILHEVMEQ  435 (720)
Q Consensus       421 m~~~~~~~L~e~mE~  435 (720)
                      ++...+..+.+++.+
T Consensus       102 LD~~~~~~l~~~l~~  116 (177)
T cd03222         102 LDIEQRLNAARAIRR  116 (177)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            677777777777653

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA

Probab=91.81  E-value=0.13  Score=62.10  Aligned_cols=100  Identities=18%  Similarity=0.203  Sum_probs=53.3

Q ss_pred             ccchhhhhhhhcCCC-CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcccccccc---ceeecCc-----cc-cce-
Q psy17703        330 HFTDKQLVRLQETPA-EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLT---AYITKDP-----ET-RQM-  398 (720)
Q Consensus       330 ~~~d~Q~iklQE~pg-~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glt---a~~~~~~-----~~-~~~-  398 (720)
                      .+.+.|.--+...-. +--++|.|+||||||++++.+...+...    |.....+..|   +......     .| ..+ 
T Consensus       352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~----g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~  427 (744)
T TIGR02768       352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAA----GYRVIGAALSGKAAEGLQAESGIESRTLASLE  427 (744)
T ss_pred             CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhC----CCeEEEEeCcHHHHHHHHhccCCceeeHHHHH
Confidence            355666654443322 2357899999999999999987654321    1100000000   0000000     00 001 


Q ss_pred             -eeecceeeecCCceeeccccccCChHHHHHHHHHH
Q psy17703        399 -VLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVM  433 (720)
Q Consensus       399 -~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~m  433 (720)
                       ....+.-.+....+++|||+..++......|+...
T Consensus       428 ~~~~~~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~  463 (744)
T TIGR02768       428 YAWANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEA  463 (744)
T ss_pred             hhhccCcccCCCCcEEEEECcccCCHHHHHHHHHHH
Confidence             01222223446789999999999987766666644

This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=91.70  E-value=0.14  Score=50.68  Aligned_cols=26  Identities=35%  Similarity=0.691  Sum_probs=23.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .-+++++|++|+|||++++++....|
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            46899999999999999999998776

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PLN02200 adenylate kinase family protein

Probab=91.70  E-value=0.14  Score=52.82  Aligned_cols=26  Identities=15%  Similarity=0.293  Sum_probs=22.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...|++.|+||+|||++++.+++...
T Consensus        43 ~~ii~I~G~PGSGKsT~a~~La~~~g   68 (234)
T PLN02200         43 PFITFVLGGPGSGKGTQCEKIVETFG   68 (234)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45789999999999999999988664

>PLN02348 phosphoribulokinase

Probab=91.67  E-value=1.5  Score=48.35  Aligned_cols=27  Identities=22%  Similarity=0.327  Sum_probs=23.8

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..+=|-+.|++|+|||++++.+++.+.
T Consensus        48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg   74 (395)
T PLN02348         48 GTVVIGLAADSGCGKSTFMRRLTSVFG   74 (395)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            446788999999999999999999875

>KOG2227|consensus

Probab=91.63  E-value=0.19  Score=55.76  Aligned_cols=41  Identities=24%  Similarity=0.401  Sum_probs=30.1

Q ss_pred             ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEee-cCceEEEecccCC
Q psy17703        411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQL-NARTSILAAANPC  462 (720)
Q Consensus       411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l-~a~~~iiaaaNp~  462 (720)
                      -++++||.|.+-...+..|+++.|           +..+ +.++.+++-||..
T Consensus       258 ~llVlDEmD~L~tr~~~vLy~lFe-----------wp~lp~sr~iLiGiANsl  299 (529)
T KOG2227|consen  258 LLLVLDEMDHLITRSQTVLYTLFE-----------WPKLPNSRIILIGIANSL  299 (529)
T ss_pred             EEEEechhhHHhhcccceeeeehh-----------cccCCcceeeeeeehhhh
Confidence            378899999988777777776654           2333 4689999999954

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=91.60  E-value=0.14  Score=55.79  Aligned_cols=28  Identities=25%  Similarity=0.649  Sum_probs=25.3

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      ...|||+.|++|+|||++++++...+|.
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~~i~~  188 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISAIPP  188 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHcccCC
Confidence            5789999999999999999999987764

>PTZ00301 uridine kinase; Provisional

Probab=91.52  E-value=1  Score=45.61  Aligned_cols=23  Identities=26%  Similarity=0.358  Sum_probs=19.8

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      =|.+.|+||+|||+|++.+.+.+
T Consensus         5 iIgIaG~SgSGKTTla~~l~~~l   27 (210)
T PTZ00301          5 VIGISGASGSGKSSLSTNIVSEL   27 (210)
T ss_pred             EEEEECCCcCCHHHHHHHHHHHH
Confidence            47789999999999999887654

>PRK14529 adenylate kinase; Provisional

Probab=91.51  E-value=0.16  Score=51.86  Aligned_cols=24  Identities=29%  Similarity=0.333  Sum_probs=21.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +|+|.|+||+|||++++.+++...
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~   25 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYD   25 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            689999999999999999998764

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=91.49  E-value=0.16  Score=47.83  Aligned_cols=24  Identities=33%  Similarity=0.488  Sum_probs=21.6

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      +.|+||+|+|||+|++.+++..+.
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~~   25 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFDP   25 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCCc
Confidence            689999999999999999987654

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=91.44  E-value=0.14  Score=48.92  Aligned_cols=22  Identities=27%  Similarity=0.371  Sum_probs=20.4

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      ++++|.||+|||++++.+++.+
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l   23 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKL   23 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999876

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=91.44  E-value=0.17  Score=49.31  Aligned_cols=28  Identities=25%  Similarity=0.271  Sum_probs=24.5

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRS  372 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~  372 (720)
                      .-+|.|+|.+|+|||++.+.+|+.+...
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~   29 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLP   29 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcCCC
Confidence            3579999999999999999999988643

>COG1485 Predicted ATPase [General function prediction only]

Probab=91.31  E-value=0.14  Score=54.98  Aligned_cols=26  Identities=27%  Similarity=0.557  Sum_probs=23.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      --+.|+|+-|.|||.|+-.....+|.
T Consensus        66 ~GlYl~GgVGrGKT~LMD~Fy~~lp~   91 (367)
T COG1485          66 RGLYLWGGVGRGKTMLMDLFYESLPG   91 (367)
T ss_pred             ceEEEECCCCccHHHHHHHHHhhCCc
Confidence            46899999999999999999988874

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=91.31  E-value=0.17  Score=55.01  Aligned_cols=28  Identities=21%  Similarity=0.418  Sum_probs=25.5

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      +..|||+.|++|+|||++++++....|.
T Consensus       159 ~~~nili~G~tgSGKTTll~aL~~~ip~  186 (332)
T PRK13900        159 SKKNIIISGGTSTGKTTFTNAALREIPA  186 (332)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence            5789999999999999999999988774

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=91.30  E-value=0.15  Score=50.10  Aligned_cols=20  Identities=35%  Similarity=0.506  Sum_probs=17.5

Q ss_pred             EEEEcCCCCHHHHHHHHHHh
Q psy17703        348 ILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~  367 (720)
                      +|+.||||+|||+|+..++.
T Consensus         2 ~li~G~~G~GKT~l~~~~~~   21 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLY   21 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            68999999999999877654

A related protein is found in archaea.

>cd04177 RSR1 RSR1 subgroup

Probab=91.20  E-value=0.16  Score=48.91  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +++++|+|+||+|||+|++++.+
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~   23 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQ   23 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999998864

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PRK00300 gmk guanylate kinase; Provisional

Probab=91.19  E-value=0.16  Score=50.82  Aligned_cols=25  Identities=32%  Similarity=0.530  Sum_probs=22.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      --+.|+|++|+|||+|++.+++..+
T Consensus         6 ~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          6 LLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCc
Confidence            4589999999999999999999876

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=91.16  E-value=0.16  Score=52.11  Aligned_cols=25  Identities=28%  Similarity=0.371  Sum_probs=21.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      =|-|+||.|||||+|++.++.+...
T Consensus        31 fvsilGpSGcGKSTLLriiAGL~~p   55 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGLEKP   55 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC
Confidence            3778999999999999999987753

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=91.02  E-value=0.19  Score=48.85  Aligned_cols=25  Identities=16%  Similarity=0.215  Sum_probs=22.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      +++|+|.||+|||++++.+++.+..
T Consensus         4 ~i~~~G~~GsGKst~~~~la~~lg~   28 (171)
T PRK03731          4 PLFLVGARGCGKTTVGMALAQALGY   28 (171)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC
Confidence            6899999999999999999987754

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=90.94  E-value=0.18  Score=49.02  Aligned_cols=21  Identities=24%  Similarity=0.494  Sum_probs=19.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .|++.|.||||||++++.++.
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~~   22 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLRE   22 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHHH
Confidence            589999999999999999983

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=90.82  E-value=0.18  Score=49.05  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=19.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .+|+|+|+||+|||+|++.+..
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~   23 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVE   23 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999988864

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PRK13948 shikimate kinase; Provisional

Probab=90.70  E-value=0.22  Score=49.32  Aligned_cols=28  Identities=21%  Similarity=0.052  Sum_probs=24.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRS  372 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~  372 (720)
                      .-+|+|+|.+|+|||++.+.+++.+...
T Consensus        10 ~~~I~LiG~~GsGKSTvg~~La~~lg~~   37 (182)
T PRK13948         10 VTWVALAGFMGTGKSRIGWELSRALMLH   37 (182)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            4689999999999999999999877543

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=90.69  E-value=0.17  Score=52.65  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.9

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      |+|+|.||+|||++++.+++.+.
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~   24 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLS   24 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999998764

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=90.68  E-value=0.15  Score=50.72  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=21.2

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      |+|.|.||+|||++++.+++.+.
T Consensus         4 iIlTGyPgsGKTtfakeLak~L~   26 (261)
T COG4088           4 IILTGYPGSGKTTFAKELAKELR   26 (261)
T ss_pred             EEEecCCCCCchHHHHHHHHHHH
Confidence            78999999999999999999774

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=90.68  E-value=0.18  Score=48.35  Aligned_cols=28  Identities=18%  Similarity=0.287  Sum_probs=23.1

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCCCCccc
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVPRSQYT  375 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~pr~~~~  375 (720)
                      |-+-|+||+|||++++.+++.+.-..+.
T Consensus         3 ItIsG~pGsG~TTva~~lAe~~gl~~vs   30 (179)
T COG1102           3 ITISGLPGSGKTTVARELAEHLGLKLVS   30 (179)
T ss_pred             EEeccCCCCChhHHHHHHHHHhCCceee
Confidence            5678999999999999999987654443

>cd01131 PilT Pilus retraction ATPase PilT

Probab=90.67  E-value=0.18  Score=50.49  Aligned_cols=24  Identities=29%  Similarity=0.483  Sum_probs=21.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+++.||+|+|||++++++....+
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            379999999999999999887664

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>KOG2383|consensus

Probab=90.62  E-value=0.11  Score=56.44  Aligned_cols=26  Identities=31%  Similarity=0.607  Sum_probs=22.1

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      --+.|+|+-|||||+|.-......|.
T Consensus       115 kGlYlYG~VGcGKTmLMDlFy~~~~~  140 (467)
T KOG2383|consen  115 KGLYLYGSVGCGKTMLMDLFYDALPP  140 (467)
T ss_pred             ceEEEecccCcchhHHHHHHhhcCCc
Confidence            36899999999999999888876664

>PLN02674 adenylate kinase

Probab=90.55  E-value=0.22  Score=51.65  Aligned_cols=26  Identities=23%  Similarity=0.382  Sum_probs=23.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..+|+|.|+||+||+++++.+++...
T Consensus        31 ~~~i~l~G~PGsGKgT~a~~La~~~~   56 (244)
T PLN02674         31 DKRLILIGPPGSGKGTQSPIIKDEYC   56 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999998654

>PRK05541 adenylylsulfate kinase; Provisional

Probab=90.53  E-value=0.22  Score=48.67  Aligned_cols=26  Identities=19%  Similarity=0.371  Sum_probs=23.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...|+|+|+||+|||++++.+++.+.
T Consensus         7 ~~~I~i~G~~GsGKst~a~~l~~~l~   32 (176)
T PRK05541          7 GYVIWITGLAGSGKTTIAKALYERLK   32 (176)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999988764

>PRK13946 shikimate kinase; Provisional

Probab=90.50  E-value=0.24  Score=48.95  Aligned_cols=27  Identities=19%  Similarity=0.214  Sum_probs=24.1

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      .-+|+|+|.||+|||++++.+++.+..
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~   36 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLATMLGL   36 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence            468999999999999999999998753

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=90.48  E-value=0.21  Score=47.57  Aligned_cols=22  Identities=23%  Similarity=0.484  Sum_probs=19.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +.|+++|+||+|||+|+..+..
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~   22 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCE   22 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999998865

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PRK13406 bchD magnesium chelatase subunit D; Provisional

Probab=90.45  E-value=0.37  Score=56.30  Aligned_cols=61  Identities=21%  Similarity=0.371  Sum_probs=57.2

Q ss_pred             hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCC
Q psy17703        654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC  714 (720)
Q Consensus       654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~  714 (720)
                      .|.+..++.|+.++||+..++++...+|.++|++..++|...|.+.+++++..++|.-||.
T Consensus        86 pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~  146 (584)
T PRK13406         86 RGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGA  146 (584)
T ss_pred             CCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCCh
Confidence            4667788999999999999999999999999999999999999999999999999997776

>smart00175 RAB Rab subfamily of small GTPases

Probab=90.43  E-value=0.2  Score=47.53  Aligned_cols=22  Identities=50%  Similarity=0.714  Sum_probs=19.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +.|+++|+||+|||+|++.+..
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~   22 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTD   22 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4689999999999999998864

Rab GTPases are implicated in vesicle trafficking.

>TIGR00235 udk uridine kinase

Probab=90.37  E-value=0.21  Score=50.40  Aligned_cols=27  Identities=22%  Similarity=0.425  Sum_probs=23.7

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      ..-|.+.|++|+|||+|++.++..++.
T Consensus         6 g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         6 GIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            456889999999999999999988763

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd00154 Rab Rab family

Probab=90.30  E-value=0.22  Score=46.48  Aligned_cols=23  Identities=39%  Similarity=0.544  Sum_probs=20.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      ++|+++|+||+|||+|+..+...
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~   23 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDG   23 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999988643

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PRK03846 adenylylsulfate kinase; Provisional

Probab=90.27  E-value=0.14  Score=51.26  Aligned_cols=25  Identities=16%  Similarity=0.292  Sum_probs=22.3

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      ..-+.|+|.+|+|||++++.++..+
T Consensus        24 ~~~i~i~G~~GsGKSTla~~l~~~l   48 (198)
T PRK03846         24 GVVLWFTGLSGSGKSTVAGALEEAL   48 (198)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3578899999999999999999866

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=90.26  E-value=0.22  Score=46.21  Aligned_cols=23  Identities=39%  Similarity=0.645  Sum_probs=20.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      ++|+++|+||+|||+|+..+...
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~   24 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGN   24 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            57999999999999999988753

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=90.25  E-value=0.22  Score=49.75  Aligned_cols=22  Identities=18%  Similarity=0.404  Sum_probs=20.4

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      |.|.|++|+|||+|++.+.+.+
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999887

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd01878 HflX HflX subfamily

Probab=90.23  E-value=0.27  Score=49.13  Aligned_cols=29  Identities=17%  Similarity=0.217  Sum_probs=24.5

Q ss_pred             hcCCCCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        340 QETPAEINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       340 QE~pg~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      .+.++.+.|+++|+||+|||+|++.+...
T Consensus        36 ~~~~~~~~I~iiG~~g~GKStLl~~l~~~   64 (204)
T cd01878          36 RKRSGIPTVALVGYTNAGKSTLFNALTGA   64 (204)
T ss_pred             hhhcCCCeEEEECCCCCCHHHHHHHHhcc
Confidence            44456789999999999999999988763

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PLN02459 probable adenylate kinase

Probab=90.22  E-value=0.24  Score=51.70  Aligned_cols=26  Identities=27%  Similarity=0.433  Sum_probs=22.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..+++|.|+||+|||++++.+++...
T Consensus        29 ~~~ii~~G~PGsGK~T~a~~la~~~~   54 (261)
T PLN02459         29 NVNWVFLGCPGVGKGTYASRLSKLLG   54 (261)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            36899999999999999999998654

>PF13479 AAA_24: AAA domain

Probab=90.20  E-value=0.16  Score=51.56  Aligned_cols=21  Identities=38%  Similarity=0.716  Sum_probs=19.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHH
Q psy17703        345 EINILLCGDPGTSKSQLLSYV  365 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~v  365 (720)
                      .+.+||+|+||+|||+++..+
T Consensus         3 ~~~~lIyG~~G~GKTt~a~~~   23 (213)
T PF13479_consen    3 PIKILIYGPPGSGKTTLAASL   23 (213)
T ss_pred             ceEEEEECCCCCCHHHHHHhC
Confidence            578999999999999988877

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=90.09  E-value=0.16  Score=47.23  Aligned_cols=26  Identities=31%  Similarity=0.466  Sum_probs=21.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +-.+.++|++|+|||+|++.++...+
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             CCEEEEEccCCCccccceeeeccccc
Confidence            34688999999999999999976543

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd04124 RabL2 RabL2 subfamily

Probab=89.99  E-value=0.24  Score=47.47  Aligned_cols=22  Identities=32%  Similarity=0.516  Sum_probs=18.9

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ++|+++|+||+|||+|++.+..
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~   22 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLM   22 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999987653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>KOG0060|consensus

Probab=89.92  E-value=0.23  Score=56.48  Aligned_cols=28  Identities=36%  Similarity=0.598  Sum_probs=24.9

Q ss_pred             CCCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        343 PAEINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       343 pg~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      |.+-|+|++||.|||||+|+|.++.+-|
T Consensus       459 ~~g~~LLItG~sG~GKtSLlRvlggLWp  486 (659)
T KOG0060|consen  459 PSGQNLLITGPSGCGKTSLLRVLGGLWP  486 (659)
T ss_pred             cCCCeEEEECCCCCchhHHHHHHhcccc
Confidence            3567999999999999999999998766

>cd00157 Rho Rho (Ras homology) family

Probab=89.91  E-value=0.24  Score=47.40  Aligned_cols=22  Identities=32%  Similarity=0.404  Sum_probs=19.7

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ++|+++|+||+|||+|++.+..
T Consensus         1 iki~i~G~~~~GKSsli~~l~~   22 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTT   22 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4789999999999999998865

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=89.90  E-value=0.23  Score=47.46  Aligned_cols=22  Identities=23%  Similarity=0.388  Sum_probs=19.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      +|+++|++|+|||+|+..+...
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~   22 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTL   22 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhh
Confidence            6899999999999999998754

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=89.89  E-value=0.22  Score=52.36  Aligned_cols=29  Identities=31%  Similarity=0.560  Sum_probs=26.2

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRS  372 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~  372 (720)
                      +..++++.|++|+|||++++++....|..
T Consensus       126 ~~~~ili~G~tGSGKTT~l~all~~i~~~  154 (270)
T PF00437_consen  126 GRGNILISGPTGSGKTTLLNALLEEIPPE  154 (270)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred             cceEEEEECCCccccchHHHHHhhhcccc
Confidence            57899999999999999999999988754

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=89.83  E-value=0.26  Score=49.44  Aligned_cols=25  Identities=20%  Similarity=0.340  Sum_probs=22.1

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .-+++.|.||+|||++++.++..+.
T Consensus         4 ~~i~i~G~~G~GKst~a~~l~~~~~   28 (197)
T PRK12339          4 TIHFIGGIPGVGKTSISGYIARHRA   28 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4689999999999999999998764

>PRK14737 gmk guanylate kinase; Provisional

Probab=89.81  E-value=0.28  Score=48.76  Aligned_cols=27  Identities=15%  Similarity=0.258  Sum_probs=23.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      ..-+.|+||+|+|||+|++.+.+..|.
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~   30 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEEHPD   30 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhcCCc
Confidence            356899999999999999999887664

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=89.73  E-value=0.25  Score=53.53  Aligned_cols=24  Identities=33%  Similarity=0.455  Sum_probs=21.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+.|+||.|+|||+++|.+|.+..
T Consensus        31 f~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          31 FVVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            467889999999999999998664

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=89.71  E-value=0.26  Score=55.05  Aligned_cols=63  Identities=32%  Similarity=0.519  Sum_probs=58.5

Q ss_pred             hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCC
Q psy17703        654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDS  716 (720)
Q Consensus       654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~  716 (720)
                      -|-+.++.+|+.++||+-.++.+.-.++.+-||+..++|+.++-..+++|+-..+||+||--.
T Consensus       276 PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpc  338 (490)
T COG0606         276 PGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPC  338 (490)
T ss_pred             CCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCc
Confidence            466789999999999999999998899999999999999999999999999999999999653

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=89.71  E-value=0.29  Score=48.21  Aligned_cols=25  Identities=28%  Similarity=0.341  Sum_probs=22.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      .+.++|++|+|||++++.++..+..
T Consensus         5 ~i~l~G~sGsGKSTl~~~la~~l~~   29 (176)
T PRK09825          5 SYILMGVSGSGKSLIGSKIAALFSA   29 (176)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCC
Confidence            4789999999999999999987753

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=89.68  E-value=0.45  Score=46.04  Aligned_cols=24  Identities=25%  Similarity=0.340  Sum_probs=20.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      +--++|+|++|+|||+|+.++...
T Consensus        35 ~k~~vl~G~SGvGKSSLiN~L~~~   58 (161)
T PF03193_consen   35 GKTSVLLGQSGVGKSSLINALLPE   58 (161)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            367889999999999999998753

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=89.67  E-value=0.24  Score=48.38  Aligned_cols=24  Identities=13%  Similarity=0.279  Sum_probs=21.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+.|+|.||+|||++++.++..+.
T Consensus         6 ~i~~~G~~GsGKST~a~~la~~l~   29 (175)
T PRK00889          6 TVWFTGLSGAGKTTIARALAEKLR   29 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999998763

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=89.64  E-value=0.5  Score=48.28  Aligned_cols=23  Identities=30%  Similarity=0.432  Sum_probs=19.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      -+-++||.|+|||+|+..+..+.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            57899999999999999886543

>cd04113 Rab4 Rab4 subfamily

Probab=89.63  E-value=0.27  Score=46.81  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=19.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ++++++|+||+|||+|++.+..
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~   22 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVE   22 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999998864

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PRK05480 uridine/cytidine kinase; Provisional

Probab=89.48  E-value=0.27  Score=49.56  Aligned_cols=25  Identities=28%  Similarity=0.500  Sum_probs=22.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      ..-|.|.|++|+|||+|++.+++.+
T Consensus         6 ~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          6 PIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            4678999999999999999999877

>PRK06547 hypothetical protein; Provisional

Probab=89.46  E-value=0.29  Score=47.97  Aligned_cols=26  Identities=23%  Similarity=0.330  Sum_probs=21.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -..|++.|++|+|||++++.+++.+.
T Consensus        15 ~~~i~i~G~~GsGKTt~a~~l~~~~~   40 (172)
T PRK06547         15 MITVLIDGRSGSGKTTLAGALAARTG   40 (172)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35678889999999999999988643

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=89.42  E-value=0.19  Score=53.08  Aligned_cols=34  Identities=15%  Similarity=0.481  Sum_probs=25.8

Q ss_pred             hheeecccCCceeeeeeccCcccCCccCCCCCCCCcceeecc
Q psy17703        286 EAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHN  327 (720)
Q Consensus       286 ~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~~~~~~~  327 (720)
                      +..|+|.+||+....-.        ..||+|+.|.+++.+.+
T Consensus       352 ~~~YRC~~CGF~a~~l~--------W~CPsC~~W~TikPir~  385 (389)
T COG2956         352 KPRYRCQNCGFTAHTLY--------WHCPSCRAWETIKPIRG  385 (389)
T ss_pred             cCCceecccCCcceeee--------eeCCCcccccccCCccc
Confidence            56799999998765443        34999999988766543

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=89.42  E-value=0.28  Score=52.51  Aligned_cols=27  Identities=30%  Similarity=0.469  Sum_probs=24.3

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +.-++++.|++|+|||++++++.+.+|
T Consensus       131 ~~~~ilI~G~tGSGKTTll~al~~~i~  157 (299)
T TIGR02782       131 ARKNILVVGGTGSGKTTLANALLAEIA  157 (299)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            457999999999999999999998775

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PLN02165 adenylate isopentenyltransferase

Probab=89.40  E-value=0.38  Score=52.01  Aligned_cols=27  Identities=22%  Similarity=0.372  Sum_probs=23.7

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      ...+.|+||+|+|||+|+..+++.++.
T Consensus        43 g~iivIiGPTGSGKStLA~~LA~~l~~   69 (334)
T PLN02165         43 DKVVVIMGATGSGKSRLSVDLATRFPS   69 (334)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHcCC
Confidence            346899999999999999999998764

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=89.35  E-value=0.27  Score=46.69  Aligned_cols=21  Identities=33%  Similarity=0.368  Sum_probs=18.8

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +|+++|+||+|||+|++.+..
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~   21 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKH   21 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhc
Confidence            589999999999999998864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=89.33  E-value=0.3  Score=46.14  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=19.2

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..|+++|+||+|||+|++.+..
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~   23 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQ   23 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999988864

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=89.32  E-value=0.24  Score=47.10  Aligned_cols=20  Identities=20%  Similarity=0.321  Sum_probs=18.3

Q ss_pred             EEcCCCCHHHHHHHHHHhhC
Q psy17703        350 LCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       350 L~G~PGtGKS~ll~~va~~~  369 (720)
                      |+|+||+|||++++.+++..
T Consensus         1 i~G~PgsGK~t~~~~la~~~   20 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRY   20 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHH
T ss_pred             CcCCCCCChHHHHHHHHHhc
Confidence            68999999999999999865

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>cd04136 Rap_like Rap-like subfamily

Probab=89.32  E-value=0.29  Score=46.43  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=19.1

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..|+++|+||+|||+|+..+..
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~   23 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQ   23 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5789999999999999887763

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01862 Rab7 Rab7 subfamily

Probab=89.31  E-value=0.28  Score=47.05  Aligned_cols=22  Identities=23%  Similarity=0.612  Sum_probs=19.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ++|+++|+||+|||+|++.+..
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~   22 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVN   22 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999988864

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=89.23  E-value=0.3  Score=36.48  Aligned_cols=27  Identities=15%  Similarity=0.541  Sum_probs=21.7

Q ss_pred             eeecccCCceeeeeeccCcccCCccCCCCCCC
Q psy17703        288 FFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTN  319 (720)
Q Consensus       288 ~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~  319 (720)
                      .|.|.+||.+....     ...+..||+|+.+
T Consensus         2 ~Y~C~~Cg~~~~~~-----~~~~irC~~CG~r   28 (44)
T smart00659        2 IYICGECGRENEIK-----SKDVVRCRECGYR   28 (44)
T ss_pred             EEECCCCCCEeecC-----CCCceECCCCCce
Confidence            69999999987765     2467899999974

present in RNA polymerase I, II and III

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]

Probab=89.22  E-value=0.86  Score=48.75  Aligned_cols=21  Identities=14%  Similarity=0.279  Sum_probs=17.6

Q ss_pred             CCccEEEEcCCCCHHHHHHHH
Q psy17703        344 AEINILLCGDPGTSKSQLLSY  364 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~  364 (720)
                      ..-.+|++.-.|.|||.++-.
T Consensus       115 ~k~~~lv~AV~GaGKTEMif~  135 (441)
T COG4098         115 QKEDTLVWAVTGAGKTEMIFQ  135 (441)
T ss_pred             hcCcEEEEEecCCCchhhhHH
Confidence            566899999999999998633

>PRK04182 cytidylate kinase; Provisional

Probab=89.17  E-value=0.34  Score=47.12  Aligned_cols=25  Identities=20%  Similarity=0.376  Sum_probs=22.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      .|+|.|.||+|||++++.+++.+.-
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg~   26 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLGL   26 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCC
Confidence            4889999999999999999987653

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=89.12  E-value=0.3  Score=46.55  Aligned_cols=21  Identities=24%  Similarity=0.358  Sum_probs=18.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      -|+++|+||+|||+|++.+..
T Consensus         2 ki~v~G~~~~GKTsli~~~~~   22 (164)
T smart00173        2 KLVVLGSGGVGKSALTIQFVQ   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999998864

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=89.11  E-value=0.29  Score=47.07  Aligned_cols=22  Identities=41%  Similarity=0.579  Sum_probs=19.9

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +.|+++|+||+|||+|+..+..
T Consensus         4 ~ki~vvG~~~~GKSsl~~~~~~   25 (167)
T cd01867           4 FKLLLIGDSGVGKSCLLLRFSE   25 (167)
T ss_pred             eEEEEECCCCCCHHHHHHHHhh
Confidence            5799999999999999998864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PRK01184 hypothetical protein; Provisional

Probab=89.09  E-value=0.31  Score=47.94  Aligned_cols=22  Identities=23%  Similarity=0.292  Sum_probs=17.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      -|+|+|+||+|||++++. ++..
T Consensus         3 ~i~l~G~~GsGKsT~a~~-~~~~   24 (184)
T PRK01184          3 IIGVVGMPGSGKGEFSKI-AREM   24 (184)
T ss_pred             EEEEECCCCCCHHHHHHH-HHHc
Confidence            478999999999999874 4433

>PRK14738 gmk guanylate kinase; Provisional

Probab=89.08  E-value=0.32  Score=49.04  Aligned_cols=26  Identities=15%  Similarity=0.326  Sum_probs=21.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..-++|+||+|+|||+|++.+.+..+
T Consensus        13 ~~~ivi~GpsG~GK~tl~~~L~~~~~   38 (206)
T PRK14738         13 PLLVVISGPSGVGKDAVLARMRERKL   38 (206)
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhcCC
Confidence            45688999999999999999976543

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=89.06  E-value=0.31  Score=47.03  Aligned_cols=24  Identities=21%  Similarity=0.444  Sum_probs=21.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -|.+.|+||+|||++++.+++.+.
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg   25 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLS   25 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            378999999999999999998764

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>cd00876 Ras Ras family

Probab=89.04  E-value=0.3  Score=45.94  Aligned_cols=21  Identities=19%  Similarity=0.325  Sum_probs=18.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .|+++|+||+|||+|++.+..
T Consensus         1 ki~i~G~~~~GKTsli~~l~~   21 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVK   21 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHh
Confidence            479999999999999998864

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=89.02  E-value=0.29  Score=45.21  Aligned_cols=35  Identities=26%  Similarity=0.334  Sum_probs=25.3

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAV  383 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~  383 (720)
                      .+-+-|.|+||||||.+++.+|+.+    |..|..|.-+
T Consensus        53 pLVlSfHG~tGtGKn~v~~liA~~l----y~~G~~S~~V   87 (127)
T PF06309_consen   53 PLVLSFHGWTGTGKNFVSRLIAEHL----YKSGMKSPFV   87 (127)
T ss_pred             CEEEEeecCCCCcHHHHHHHHHHHH----HhcccCCCce
Confidence            4566799999999999999998754    3344444433

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PLN02318 phosphoribulokinase/uridine kinase

Probab=88.98  E-value=3.4  Score=48.03  Aligned_cols=27  Identities=22%  Similarity=0.402  Sum_probs=23.8

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +-+=|.+.|++|+|||+|++.++..+|
T Consensus        64 ~riIIGIaGpSGSGKTTLAk~LaglLp   90 (656)
T PLN02318         64 GIILVGVAGPSGAGKTVFTEKVLNFMP   90 (656)
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence            456788999999999999999998765

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=88.94  E-value=0.33  Score=52.27  Aligned_cols=28  Identities=29%  Similarity=0.632  Sum_probs=25.0

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      +.-++++.|++|+|||++++++....|.
T Consensus       143 ~~~~ili~G~tGsGKTTll~al~~~~~~  170 (308)
T TIGR02788       143 SRKNIIISGGTGSGKTTFLKSLVDEIPK  170 (308)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHccCCc
Confidence            5679999999999999999999887763

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=88.93  E-value=0.31  Score=52.62  Aligned_cols=27  Identities=26%  Similarity=0.485  Sum_probs=23.8

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...|+|+.|++|+|||++++++....+
T Consensus       143 ~~~nilI~G~tGSGKTTll~aL~~~i~  169 (323)
T PRK13833        143 SRLNIVISGGTGSGKTTLANAVIAEIV  169 (323)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence            456999999999999999999988663

>cd04159 Arl10_like Arl10-like subfamily

Probab=88.93  E-value=0.27  Score=45.90  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=18.8

Q ss_pred             EEEEcCCCCHHHHHHHHHHhh
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~  368 (720)
                      |.|+|++|+|||+|++.+...
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            789999999999999998753

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=88.93  E-value=0.3  Score=49.14  Aligned_cols=24  Identities=17%  Similarity=0.227  Sum_probs=20.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      +.-++++|+||+|||+++..++..
T Consensus        12 g~i~~i~G~~GsGKT~l~~~~~~~   35 (209)
T TIGR02237        12 GTITQIYGPPGSGKTNICMILAVN   35 (209)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            446899999999999999877643

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK13695 putative NTPase; Provisional

Probab=88.90  E-value=0.32  Score=47.52  Aligned_cols=23  Identities=30%  Similarity=0.564  Sum_probs=20.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      +++|.|+||+|||+|++.++..+
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l   24 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELL   24 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999987653

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=88.88  E-value=0.32  Score=50.66  Aligned_cols=27  Identities=26%  Similarity=0.255  Sum_probs=22.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      +--+.|+||.|+|||+|++.+++++++
T Consensus        28 G~i~~iiGpNG~GKSTLLk~l~g~l~p   54 (258)
T COG1120          28 GEITGILGPNGSGKSTLLKCLAGLLKP   54 (258)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence            345778999999999999999987763

>cd04157 Arl6 Arl6 subfamily

Probab=88.87  E-value=0.28  Score=46.49  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=18.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +|+++|+||+|||+|++.+..
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~   21 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKP   21 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcc
Confidence            589999999999999988865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=88.83  E-value=0.3  Score=48.68  Aligned_cols=24  Identities=21%  Similarity=0.423  Sum_probs=21.7

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      |.+.|+||+|||++++.++..+..
T Consensus         2 IgI~G~sgSGKTTla~~L~~~L~~   25 (194)
T PF00485_consen    2 IGIAGPSGSGKTTLAKRLAQILNK   25 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCc
Confidence            678999999999999999998864

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=88.74  E-value=0.79  Score=46.53  Aligned_cols=22  Identities=23%  Similarity=0.196  Sum_probs=19.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      --++|+||.|.|||++++.++.
T Consensus        30 ~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          30 SIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             eEEEEECCCCCChHHHHHHHHH
Confidence            4588999999999999999984

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd01860 Rab5_related Rab5-related subfamily

Probab=88.74  E-value=0.33  Score=46.10  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=19.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +.++++|++|+|||+|++.+..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~   23 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVK   23 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            5789999999999999998875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=88.64  E-value=0.34  Score=46.18  Aligned_cols=22  Identities=18%  Similarity=0.442  Sum_probs=19.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ++|+++|++|+|||+|+..+..
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~   22 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHS   22 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4789999999999999988763

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=88.57  E-value=0.33  Score=49.13  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=22.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +-.+.|+|+.|+|||+|++.++...+
T Consensus        30 G~~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          30 GEFVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence            34688999999999999999987664

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=88.56  E-value=0.35  Score=45.31  Aligned_cols=22  Identities=32%  Similarity=0.607  Sum_probs=19.9

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +.|+++|+||+|||+++.++..
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~   23 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAG   23 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHC
Confidence            5799999999999999998864

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK13826 Dtr system oriT relaxase; Provisional

Probab=88.47  E-value=0.25  Score=61.20  Aligned_cols=99  Identities=14%  Similarity=0.219  Sum_probs=55.0

Q ss_pred             cchhhhhhhhcC-CCCccEEEEcCCCCHHHHHHHHHHhhCCC---Cccc---cCCcc----ccccccceeecCccccce-
Q psy17703        331 FTDKQLVRLQET-PAEINILLCGDPGTSKSQLLSYVYDLVPR---SQYT---SGKGS----SAVGLTAYITKDPETRQM-  398 (720)
Q Consensus       331 ~~d~Q~iklQE~-pg~i~vLL~G~PGtGKS~ll~~va~~~pr---~~~~---~g~~s----s~~glta~~~~~~~~~~~-  398 (720)
                      +.+.|.--+... .++--.++.|.+|||||++++.+.+....   .+..   +|+-.    ...|..+..+     ..| 
T Consensus       382 Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TI-----as~l  456 (1102)
T PRK13826        382 LSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTL-----SSWE  456 (1102)
T ss_pred             CCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeH-----HHHH
Confidence            444555333322 23456899999999999999999875421   1111   01000    0011111000     011 


Q ss_pred             -eeecceeeecCCceeeccccccCChHHHHHHHHHHH
Q psy17703        399 -VLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVME  434 (720)
Q Consensus       399 -~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE  434 (720)
                       ....|.-.+..+.+++|||..-++......|+...+
T Consensus       457 l~~~~~~~~l~~~~vlVIDEAsMv~~~~m~~Ll~~~~  493 (1102)
T PRK13826        457 LRWNQGRDQLDNKTVFVLDEAGMVASRQMALFVEAVT  493 (1102)
T ss_pred             hhhccCccCCCCCcEEEEECcccCCHHHHHHHHHHHH
Confidence             112334445556799999999888887777777765

>PRK13975 thymidylate kinase; Provisional

Probab=88.43  E-value=0.36  Score=47.90  Aligned_cols=24  Identities=17%  Similarity=0.216  Sum_probs=22.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -|.+.|++|+|||++++.+++.+.
T Consensus         4 ~I~ieG~~GsGKtT~~~~L~~~l~   27 (196)
T PRK13975          4 FIVFEGIDGSGKTTQAKLLAEKLN   27 (196)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999999875

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=88.42  E-value=0.35  Score=50.95  Aligned_cols=26  Identities=23%  Similarity=0.408  Sum_probs=23.7

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      .|+++.|+||+|||+|++.++..++.
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~  137 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILST  137 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence            59999999999999999999987754

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=88.37  E-value=0.88  Score=47.83  Aligned_cols=25  Identities=24%  Similarity=0.252  Sum_probs=21.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -.+++.|++|+|||++++++...++
T Consensus        81 GlilisG~tGSGKTT~l~all~~i~  105 (264)
T cd01129          81 GIILVTGPTGSGKTTTLYSALSELN  105 (264)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhhhC
Confidence            4699999999999999998876664

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>cd04117 Rab15 Rab15 subfamily

Probab=88.36  E-value=0.35  Score=46.31  Aligned_cols=21  Identities=38%  Similarity=0.580  Sum_probs=18.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHH
Q psy17703        346 INILLCGDPGTSKSQLLSYVY  366 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va  366 (720)
                      ++|+++|+||+|||+|+..+.
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~   21 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFT   21 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHh
Confidence            368999999999999996664

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PRK08356 hypothetical protein; Provisional

Probab=88.29  E-value=0.36  Score=48.19  Aligned_cols=22  Identities=9%  Similarity=0.256  Sum_probs=19.7

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..|+|+|+||+|||++++++.+
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~~   27 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFEE   27 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999964

>cd01868 Rab11_like Rab11-like

Probab=88.20  E-value=0.36  Score=46.11  Aligned_cols=22  Identities=45%  Similarity=0.631  Sum_probs=19.9

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .+|+++|+||+|||+|++.+..
T Consensus         4 ~ki~vvG~~~~GKSsli~~l~~   25 (165)
T cd01868           4 FKIVLIGDSGVGKSNLLSRFTR   25 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5799999999999999998864

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>KOG1970|consensus

Probab=88.19  E-value=0.73  Score=52.24  Aligned_cols=29  Identities=21%  Similarity=0.228  Sum_probs=24.8

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRS  372 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~  372 (720)
                      +.--+||+||+|+|||+.++.+++.+...
T Consensus       109 ~~~iLLltGPsGcGKSTtvkvLskelg~~  137 (634)
T KOG1970|consen  109 GSRILLLTGPSGCGKSTTVKVLSKELGYQ  137 (634)
T ss_pred             CceEEEEeCCCCCCchhHHHHHHHhhCce
Confidence            55568999999999999999999987543

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=88.16  E-value=0.46  Score=47.28  Aligned_cols=23  Identities=17%  Similarity=0.397  Sum_probs=20.8

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      |.+.|.||+|||++++.+++.++
T Consensus         2 i~i~G~sgsGKTtla~~l~~~~~   24 (187)
T cd02024           2 VGISGVTNSGKTTLAKLLQRILP   24 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            57889999999999999999874

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=88.14  E-value=0.42  Score=48.27  Aligned_cols=26  Identities=23%  Similarity=0.455  Sum_probs=21.4

Q ss_pred             CCccEEEEcCCCCHHHHHH-HHHHhhC
Q psy17703        344 AEINILLCGDPGTSKSQLL-SYVYDLV  369 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll-~~va~~~  369 (720)
                      ..+.+.++|++|+|||+|+ +++....
T Consensus         8 ~~~kv~liG~~g~GKTtLi~~~~~~~~   34 (215)
T PTZ00132          8 PEFKLILVGDGGVGKTTFVKRHLTGEF   34 (215)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHhCCC
Confidence            5689999999999999999 5665443

>cd01898 Obg Obg subfamily

Probab=88.13  E-value=0.36  Score=46.24  Aligned_cols=21  Identities=38%  Similarity=0.529  Sum_probs=19.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +|.++|+||+|||+|++.+..
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~   22 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISN   22 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhc
Confidence            689999999999999999975

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=88.13  E-value=0.37  Score=43.33  Aligned_cols=21  Identities=29%  Similarity=0.580  Sum_probs=18.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHH
Q psy17703        346 INILLCGDPGTSKSQLLSYVY  366 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va  366 (720)
                      --+.|.||+|+|||+|++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            457899999999999999875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=88.06  E-value=0.39  Score=48.40  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=21.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .+.|+|+.|+|||+|++.++.+.+
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~~   50 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLTP   50 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCCC
Confidence            789999999999999999987664

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=88.06  E-value=0.38  Score=45.65  Aligned_cols=22  Identities=18%  Similarity=0.449  Sum_probs=19.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +.|+++|++|+|||+|++.+..
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~   22 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVK   22 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3689999999999999998864

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=88.05  E-value=0.38  Score=49.30  Aligned_cols=26  Identities=23%  Similarity=0.268  Sum_probs=22.7

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +-.+.|+|+.|+|||+|++.++...+
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          31 GEIFGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34688999999999999999997765

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=88.05  E-value=0.39  Score=48.14  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=21.9

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -.+.|+|++|+|||+|++.++...+
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~~~   49 (206)
T TIGR03608        25 KMYAIIGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4588999999999999999987654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=88.03  E-value=0.39  Score=45.58  Aligned_cols=22  Identities=23%  Similarity=0.354  Sum_probs=19.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ++|+++|+||+|||+|+..+..
T Consensus         3 ~ki~i~G~~~~GKtsl~~~~~~   24 (164)
T cd04145           3 YKLVVVGGGGVGKSALTIQFIQ   24 (164)
T ss_pred             eEEEEECCCCCcHHHHHHHHHh
Confidence            6899999999999999987754

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=87.99  E-value=0.39  Score=48.36  Aligned_cols=25  Identities=16%  Similarity=0.252  Sum_probs=21.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -.+.|+|+.|+|||+|++.++...+
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~~~   51 (210)
T cd03269          27 EIFGLLGPNGAGKTTTIRMILGIIL   51 (210)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4588999999999999999987654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd04140 ARHI_like ARHI subfamily

Probab=87.96  E-value=0.41  Score=45.93  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=19.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..|+++|++|+|||+|++.+..
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~   23 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVK   23 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            5789999999999999987754

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=87.91  E-value=0.39  Score=48.38  Aligned_cols=25  Identities=24%  Similarity=0.321  Sum_probs=22.1

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -.+.|.|+.|+|||+|++.++...+
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03301          27 EFVVLLGPSGCGKTTTLRMIAGLEE   51 (213)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4588999999999999999997664

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=87.89  E-value=0.41  Score=46.31  Aligned_cols=27  Identities=26%  Similarity=0.278  Sum_probs=23.5

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      +-.+.|.|+.|+|||+|++.++...+.
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~   52 (163)
T cd03216          26 GEVHALLGENGAGKSTLMKILSGLYKP   52 (163)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            347889999999999999999987753

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PF01057 Parvo_NS1: Parvovirus non-structural protein NS1; InterPro: IPR001257 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides

Probab=87.86  E-value=0.46  Score=50.05  Aligned_cols=94  Identities=15%  Similarity=0.174  Sum_probs=55.8

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHHH
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTR  426 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~  426 (720)
                      -++|+|||+||||.|+.+|+..+|..-.....             +   ..+.+..    ..+..++.-||- .|..+..
T Consensus       115 ti~~~Gp~~tGKt~la~aI~~~~~~~G~vn~~-------------n---~nF~f~d----~~~k~l~~weE~-~~~~~~v  173 (271)
T PF01057_consen  115 TIWFYGPASTGKTNLADAIANAVPNYGCVNWN-------------N---NNFPFQD----CFNKRLIWWEEP-NMYPDEV  173 (271)
T ss_dssp             EEEEESTTTSSHCHCHHCCCHHSCCEEEEECT-------------T---TCCCCCC----CCCECEEECTCG-GCCTTCH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhCCcccEeccC-------------C---CCCChhh----hhhccEEEeccc-CccHHHH
Confidence            68999999999999999999887642111000             0   1111110    112345667776 5666667


Q ss_pred             HHHHHHHHhceEeeecc-CeEEeecCceEEEecccCC
Q psy17703        427 SILHEVMEQQTLSIAKA-GIICQLNARTSILAAANPC  462 (720)
Q Consensus       427 ~~L~e~mE~~~vsi~k~-g~~~~l~a~~~iiaaaNp~  462 (720)
                      +.+..++.-..+.+... .....+ .++=+|-++|-.
T Consensus       174 e~~K~ilgG~~v~vd~K~k~~~~~-~~tPviItsn~d  209 (271)
T PF01057_consen  174 ETAKMILGGTPVRVDVKNKDSEEL-ERTPVIITSNND  209 (271)
T ss_dssp             HHHHHCCTTSEEEEEETTTEEEEE-EEEEEEEEECCE
T ss_pred             HHHHHHhCCCceEeecccCCceEe-cCCceEEEeccc
Confidence            77777777777777533 333444 345455566643

Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents the helicase domain of the Parvovirus NS1 protein; which is required for viral DNA replication []. This domain contains the ATP/GTP-binding site motif A (P-loop). Parvoviral NS1 also regulates host gene expression through histone acetylation []. ; GO: 0019079 viral genome replication; PDB: 3P0S_A 1S9H_A 1U0J_A.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=87.80  E-value=0.41  Score=45.32  Aligned_cols=21  Identities=24%  Similarity=0.341  Sum_probs=18.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .|.++|+||+|||+|++.+..
T Consensus         2 ki~~~G~~~~GKTsl~~~l~~   22 (164)
T cd04139           2 KVIVVGAGGVGKSALTLQFMY   22 (164)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            588999999999999988874

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=87.76  E-value=0.38  Score=50.45  Aligned_cols=23  Identities=22%  Similarity=0.083  Sum_probs=19.5

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +.-+|+.|+||+|||+|+..++.
T Consensus        36 gs~~lI~G~pGtGKT~l~~qf~~   58 (259)
T TIGR03878        36 YSVINITGVSDTGKSLMVEQFAV   58 (259)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            45789999999999999887654

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=87.73  E-value=0.41  Score=48.26  Aligned_cols=26  Identities=31%  Similarity=0.441  Sum_probs=22.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +-.+.|+|+.|+|||+|++.++...+
T Consensus        27 G~~~~i~G~nGsGKSTLl~~l~G~~~   52 (214)
T cd03292          27 GEFVFLVGPSGAGKSTLLKLIYKEEL   52 (214)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34688999999999999999987654

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=87.70  E-value=0.4  Score=45.45  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=19.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .|+|+|+.|+|||+|++++..
T Consensus         3 rimliG~~g~GKTTL~q~L~~   23 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNG   23 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcC
Confidence            489999999999999999965

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01863 Rab18 Rab18 subfamily

Probab=87.67  E-value=0.42  Score=45.36  Aligned_cols=22  Identities=50%  Similarity=0.694  Sum_probs=19.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +.++++|+||+|||+|+..+..
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~   22 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTD   22 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            3689999999999999988864

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=87.66  E-value=0.38  Score=44.77  Aligned_cols=21  Identities=24%  Similarity=0.404  Sum_probs=18.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .|.++|+||+|||+|+..+..
T Consensus         2 kv~liG~~~vGKSsL~~~l~~   22 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQG   22 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcC
Confidence            478999999999999998764

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=87.65  E-value=0.41  Score=46.09  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=21.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      -|+|.|-||+|||+|++++.+.+
T Consensus         4 vIwltGlsGsGKtTlA~~L~~~L   26 (156)
T PF01583_consen    4 VIWLTGLSGSGKTTLARALERRL   26 (156)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            48999999999999999999866

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=87.63  E-value=0.34  Score=38.05  Aligned_cols=42  Identities=19%  Similarity=0.425  Sum_probs=29.6

Q ss_pred             ecccc-hhhhhheeecccCCceeeeeecc-CcccCCccCCCCCC
Q psy17703        277 TSNII-PEMREAFFRCIVCNYSTTVEIDR-GRIHEPTLCTNCST  318 (720)
Q Consensus       277 ~s~v~-p~~~~~~f~C~~Cg~~~~~~~~~-~~~~~p~~C~~C~~  318 (720)
                      ...+. |.-+-..|.|++||.+....-.. .+...|..||+|+=
T Consensus        15 Cg~~i~p~e~~v~F~CPnCGe~~I~Rc~~CRk~g~~Y~Cp~CGF   58 (61)
T COG2888          15 CGREIAPGETAVKFPCPNCGEVEIYRCAKCRKLGNPYRCPKCGF   58 (61)
T ss_pred             CCCEeccCCceeEeeCCCCCceeeehhhhHHHcCCceECCCcCc
Confidence            33344 66667789999999776544332 46778999999984

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=87.61  E-value=0.44  Score=46.74  Aligned_cols=26  Identities=31%  Similarity=0.368  Sum_probs=22.5

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +-.+.|.|++|+|||+|++.++...+
T Consensus        28 Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (178)
T cd03247          28 GEKIALLGRSGSGKSTLLQLLTGDLK   53 (178)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccCC
Confidence            34688999999999999999987654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=87.57  E-value=0.41  Score=49.33  Aligned_cols=25  Identities=32%  Similarity=0.437  Sum_probs=21.9

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -.+.|+||.|+|||+|++.++...+
T Consensus        29 e~~~l~G~nGsGKSTLl~~l~Gl~~   53 (243)
T TIGR02315        29 EFVAIIGPSGAGKSTLLRCINRLVE   53 (243)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4588999999999999999987654

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=87.54  E-value=0.45  Score=46.33  Aligned_cols=26  Identities=27%  Similarity=0.437  Sum_probs=22.7

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +-.+.|.||+|+|||+|++.++...+
T Consensus        28 G~~~~l~G~nGsGKstLl~~i~G~~~   53 (171)
T cd03228          28 GEKVAIVGPSGSGKSTLLKLLLRLYD   53 (171)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            34678999999999999999998765

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=87.54  E-value=0.46  Score=46.33  Aligned_cols=25  Identities=24%  Similarity=0.433  Sum_probs=22.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -.+.|+|+.|+|||+|++.++...+
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~~~   53 (173)
T cd03246          29 ESLAIIGPSGSGKSTLARLILGLLR   53 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccC
Confidence            4678999999999999999997765

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK13808 adenylate kinase; Provisional

Probab=87.53  E-value=0.49  Score=51.24  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=21.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +|+|+||||+|||++++.+++...
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~yg   25 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYG   25 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999988654

>PRK13889 conjugal transfer relaxase TraA; Provisional

Probab=87.51  E-value=0.39  Score=59.23  Aligned_cols=84  Identities=18%  Similarity=0.140  Sum_probs=44.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC---CccccCC-cccc------ccccceeecCccccceeeecceeeecCCceeecc
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR---SQYTSGK-GSSA------VGLTAYITKDPETRQMVLQTGALVLADSGVCCID  416 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr---~~~~~g~-~ss~------~glta~~~~~~~~~~~~~~~G~l~lad~gI~~ID  416 (720)
                      .+++.|.||||||++++.+......   .+..... +..+      .|..+..+.. ...  ....|...+....+++||
T Consensus       364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~s-ll~--~~~~~~~~l~~~~vlIVD  440 (988)
T PRK13889        364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIAS-LEH--GWGQGRDLLTSRDVLVID  440 (988)
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHH-HHh--hhcccccccccCcEEEEE
Confidence            4679999999999999887765421   1111000 0000      0110000000 000  011233334566799999


Q ss_pred             ccccCChHHHHHHHHHH
Q psy17703        417 EFDKMSDTTRSILHEVM  433 (720)
Q Consensus       417 Eidkm~~~~~~~L~e~m  433 (720)
                      |+.-++......|+...
T Consensus       441 EASMv~~~~m~~LL~~a  457 (988)
T PRK13889        441 EAGMVGTRQLERVLSHA  457 (988)
T ss_pred             CcccCCHHHHHHHHHhh
Confidence            99988887666665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	720
3f9v_A	595	Crystal Structure Of A Near Full-Length Archaeal Mc		1e-52
3f9v_A	595	Crystal Structure Of A Near Full-Length Archaeal Mc		5e-17
3f8t_A	506	Crystal Structure Analysis Of A Full-Length Mcm Hom		2e-24
3f8t_A	506	Crystal Structure Analysis Of A Full-Length Mcm Hom		5e-05
1ltl_A	279	The Dodecamer Structure Of Mcm From Archaeal M. The		5e-08
2vl6_A	268	Structural Analysis Of The Sulfolobus Solfataricus		3e-07

>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm: Functional Insights For An Aaa+ Hexameric Helicase Length = 595

Iteration: 1
 Score =  204 bits (519), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/264 (42%), Positives = 159/264 (60%), Gaps = 16/264 (6%)
Query: 344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTG 403
            +I+IL+ GDPGT+KSQ+L ++  + PR+ YT+GKGS+A GLTA + ++  T +  L+ G
Sbjct: 326 GDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAG 385
Query: 404 ALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD 463
           ALVLAD G+  IDE DKM D  R  +HE MEQQT+SIAKAGI+ +LNAR +++AA NP  
Sbjct: 386 ALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKF 445
Query: 464 SQWNTSKTIIDNIRLPHTXXXXXXXXXXXXXPQSEQFDARLARH-------------LDI 510
            ++ + + + DNI LP T                EQ D  LA +             +DI
Sbjct: 446 GRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDI 504
Query: 511 TVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGR--GRISAYPRQLESLIRLSE 568
             LR YIAYA+++++P ++ EA   +   +V+MRK  +      I   PRQLE+LIR+SE
Sbjct: 505 DTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISE 564
Query: 569 AHAKMRYSETVEVQDVDEAWRLHR 592
           A+AKM     V  +D + A  + R
Sbjct: 565 AYAKMALKAEVTREDAERAINIMR 588

>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm: Functional Insights For An Aaa+ Hexameric Helicase Length = 595

Iteration: 1
 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 46/59 (77%)
Query: 655 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP 713
           GALVLAD G+  IDE DKM D  R  +HE MEQQT+SIAKAGI+ +LNAR +++AA NP
Sbjct: 385 GALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNP 443

>pdb|3F8T|A Chain A, Crystal Structure Analysis Of A Full-Length Mcm Homolog From Methanopyrus Kandleri Length = 506

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/278 (34%), Positives = 141/278 (50%), Gaps = 24/278 (8%)
Query: 346 INILLCGDPGTSKSQLLSYVYD-LVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGA 404
           +++LL G P    S++L +V D L PR  Y   + +    LTA + +D   R   L+ GA
Sbjct: 240 LHVLLAGYPVVC-SEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKED---RGWALRAGA 295
Query: 405 LVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDS 464
            VLAD G+  +D  +   +  R  L E M++ T+++   GI   LNAR ++LAA NP + 
Sbjct: 296 AVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD--GI--ALNARCAVLAAINPGE- 350
Query: 465 QWNTSKTI----IDNIRLPHTXXXXXXXXXXXXXPQSEQFDARLARHLDITVLRDYIAYA 520
           QW +   I    +D   L H                 EQ D  +  +   T+LR Y+ YA
Sbjct: 351 QWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQ-DTEVPSY---TLLRRYLLYA 406
Query: 521 -QEHLSPTLSEEASQRLIQTYVDMRK-----LGAGRGRISAYPRQLESLIRLSEAHAKMR 574
            +EH +P L+EEA +RL   Y   R+     LG G   +    RQLES+ RL++AHA+MR
Sbjct: 407 IREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMR 466
Query: 575 YSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSIL 612
            S+ VE +DVD A  L    L+ +   P   +I +S L
Sbjct: 467 LSDDVEPEDVDIAAELVDWYLETAMQIPGGDEIRISSL 504

>pdb|3F8T|A Chain A, Crystal Structure Analysis Of A Full-Length Mcm Homolog From Methanopyrus Kandleri Length = 506

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 655 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC 714
           GA VLAD G+  +D  +   +  R  L E M++ T+++   GI   LNAR ++LAA NP 
Sbjct: 294 GAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTV--DGI--ALNARCAVLAAINPG 349
Query: 715 DSQWNT 720
           + QW +
Sbjct: 350 E-QWPS 354

>pdb|1LTL|A Chain A, The Dodecamer Structure Of Mcm From Archaeal M. Thermoautotrophicum Length = 279

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 15/170 (8%)
Query: 193 LNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLEHQIQVRPFNAKK 252
           + V+   L  FD  L   L+  P +VI      +     +R    V    + +R      
Sbjct: 44  IEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRN--IDRLRKNV---DLNIRFSGISN 98
Query: 253 TRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTL 312
              LR L  + I + + ++G+V +T  I P + +A F C  C     V      I EP+L
Sbjct: 99  VIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAVTQSTNMITEPSL 158
Query: 313 CTNCSTNHCFSLVHNRSHFTDKQLVRLQ---------ETPAEINILLCGD 353
           C+ C     F L+ + S F D Q ++LQ         E P +I ++L  D
Sbjct: 159 CSECG-GRSFRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDD 207

>pdb|2VL6|A Chain A, Structural Analysis Of The Sulfolobus Solfataricus Mcm Protein N-Terminal Domain Length = 268

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/172 (20%), Positives = 78/172 (45%), Gaps = 6/172 (3%)
Query: 181 RIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLE 240
           RI ++ +     L +  + +  F+  L  +++   + ++PIL+  + ++  +  P    +
Sbjct: 33  RINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLDPTYQRD 92
Query: 241 -HQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTT 299
             ++ VR     +   LR +   DI +LITI+G++++ + +   + +A ++ I  +    
Sbjct: 93  IEKVHVRIVGIPRVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQE 152
Query: 300 VEIDRGR-----IHEPTLCTNCSTNHCFSLVHNRSHFTDKQLVRLQETPAEI 346
            E          +  PT+C  C     F L+  ++   D Q   +QE P E+
Sbjct: 153 FEWPEDEEMPEVLEMPTICPKCGKPGQFRLIPEKTKLIDWQKAVIQERPEEV 204

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	720
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	1e-149
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	1e-46
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	1e-41
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	2e-38
3f8t_A	506	Predicted ATPase involved in replication control,	1e-130
3f8t_A	506	Predicted ATPase involved in replication control,	2e-28
3f8t_A	506	Predicted ATPase involved in replication control,	1e-22
3f8t_A	506	Predicted ATPase involved in replication control,	5e-05
2vl6_A	268	SSO MCM N-TER, minichromosome maintenance protein	4e-53
2vl6_A	268	SSO MCM N-TER, minichromosome maintenance protein	1e-20
1ltl_A	279	DNA replication initiator (CDC21/CDC54); HET: DNA;	2e-50
1ltl_A	279	DNA replication initiator (CDC21/CDC54); HET: DNA;	2e-25
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-11
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	2e-11
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	4e-04
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	8e-05

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Length = 595

 Score =  445 bits (1146), Expect = e-149
 Identities = 122/270 (45%), Positives = 173/270 (64%), Gaps = 16/270 (5%)

Query: 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGA 404
           +I+IL+ GDPGT+KSQ+L ++  + PR+ YT+GKGS+A GLTA + ++  T +  L+ GA
Sbjct: 327 DIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGA 386

Query: 405 LVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDS 464
           LVLAD G+  IDE DKM D  R  +HE MEQQT+SIAKAGI+ +LNAR +++AA NP   
Sbjct: 387 LVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFG 446

Query: 465 QWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARH-------------LDIT 511
           ++ + + + DNI LP T+LSRFDLIF+L D   EQ D  LA +             +DI 
Sbjct: 447 RYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDID 505

Query: 512 VLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGA--GRGRISAYPRQLESLIRLSEA 569
            LR YIAYA+++++P ++ EA   +   +V+MRK  +      I   PRQLE+LIR+SEA
Sbjct: 506 TLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEA 565

Query: 570 HAKMRYSETVEVQDVDEAWRLHREALKQSA 599
           +AKM     V  +D + A  + R  L+   
Sbjct: 566 YAKMALKAEVTREDAERAINIMRLFLESVG 595

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Length = 595

 Score =  173 bits (442), Expect = 1e-46
 Identities = 35/173 (20%), Positives = 78/173 (45%), Gaps = 6/173 (3%)

Query: 180 RRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVL 239
            RI ++ +     L +  + +  F+  L  +++   + ++PIL+  + ++  +  P    
Sbjct: 26  ERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLDPTYQR 85

Query: 240 EHQ-IQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYST 298
           + + + VR     +   LR +   DI +LITI+G++++ + +   + +A ++ I  +   
Sbjct: 86  DIEKVHVRIVGIPRVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQ 145

Query: 299 TVEIDRGR-----IHEPTLCTNCSTNHCFSLVHNRSHFTDKQLVRLQETPAEI 346
             E          +  PT+C  C     F L+  ++   D Q   +QE P E+
Sbjct: 146 EFEWPEDEEMPEVLEMPTICPKCGKPGQFRLIPEKTKLIDWQKAVIQERPEEV 198

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Length = 595

 Score =  159 bits (405), Expect = 1e-41
 Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 8/133 (6%)

Query: 1   MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVH 60
           +P+GQ P  + +   +DLVDS +PGDRV VTGI      Q +P  R  ++V+  ++ V  
Sbjct: 198 VPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILD--IKQDSPVKRGSRAVFDIYMKVSS 255

Query: 61  FRKIDATRLYKQDEKEHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIML 120
                      +   E     E  + +K L++ P I +R+ S+I PSIYG+ ++K+ + L
Sbjct: 256 IEVSQ------KVLDEVIISEEDEKKIKDLAKDPWIRDRIISSIAPSIYGHWELKEALAL 309

Query: 121 QMFGGTKKTFDET 133
            +FGG  K  ++T
Sbjct: 310 ALFGGVPKVLEDT 322

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} Length = 595

 Score =  150 bits (380), Expect = 2e-38
 Identities = 38/65 (58%), Positives = 48/65 (73%)

Query: 655 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC 714
           GALVLAD G+  IDE DKM D  R  +HE MEQQT+SIAKAGI+ +LNAR +++AA NP 
Sbjct: 385 GALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPK 444

Query: 715 DSQWN 719
             ++ 
Sbjct: 445 FGRYI 449

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Length = 506

 Score =  394 bits (1015), Expect = e-130
 Identities = 92/275 (33%), Positives = 130/275 (47%), Gaps = 16/275 (5%)

Query: 345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGA 404
            +++LL G P      L   +  L PR  Y   + +    LTA + +D       L+ GA
Sbjct: 239 RLHVLLAGYPVVCSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKEDRG---WALRAGA 295

Query: 405 LVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDS 464
            VLAD G+  +D  +   +  R  L E M++ T+++        LNAR ++LAA NP   
Sbjct: 296 AVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIA----LNARCAVLAAINP--G 349

Query: 465 QWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARH-LDITVLRDYIAYAQ-E 522
           +   S   I  I L    LS FDLI  L                   T+LR Y+ YA  E
Sbjct: 350 EQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIRE 409

Query: 523 HLSPTLSEEASQRLIQTYVDMRK-----LGAGRGRISAYPRQLESLIRLSEAHAKMRYSE 577
           H +P L+EEA +RL   Y   R+     LG G   +    RQLES+ RL++AHA+MR S+
Sbjct: 410 HPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSD 469

Query: 578 TVEVQDVDEAWRLHREALKQSATDPLSGKIDVSIL 612
            VE +DVD A  L    L+ +   P   +I +S L
Sbjct: 470 DVEPEDVDIAAELVDWYLETAMQIPGGDEIRISSL 504

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Length = 506

 Score =  118 bits (298), Expect = 2e-28
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 655 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP 713
           GA VLAD G+  +D  +   +  R  L E M++ T+++        LNAR ++LAA NP
Sbjct: 294 GAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIA----LNARCAVLAAINP 348

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Length = 506

 Score =  101 bits (252), Expect = 1e-22
 Identities = 29/135 (21%), Positives = 47/135 (34%), Gaps = 32/135 (23%)

Query: 1   MPAGQTPHSVVLFTYNDLV------DSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKT 54
           +   +     ++ T ++LV        + PG RV + GI R+                  
Sbjct: 128 VRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVRS-----------------A 170

Query: 55  HIDVVHFRKIDATRLYKQDEKEHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDV 114
            +D +   K       K    E    P  +E  + L+   D       AI P + G E+V
Sbjct: 171 TLDALEVHK-------KDPIPEVHPDPAELEEFRELAD-KDPLTTFARAIAP-LPGAEEV 221

Query: 115 KKGIMLQMFGGTKKT 129
            K + LQ+F    K 
Sbjct: 222 GKMLALQLFSCVGKN 236

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Length = 506

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 9/83 (10%)

Query: 272 GMVIRTSNIIPEMRE--AFFRCIVCNYSTTVEI---DRGRIHEPTLCTNCSTN---HCFS 323
             V     ++ ++RE  +     +  ++  VE    +  R   P +          H F 
Sbjct: 47  ARVTSGKPVVLDLRELDSDLASWIATHARLVEPALRELVRTVAPDVEPRVRFRGLPHRFR 106

Query: 324 LVHNRSHFTDKQLVRLQETPAEI 346
            V  R    D  L+ ++    E+
Sbjct: 107 RV-ERIRPMDGALISIEGVVREV 128

>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus} Length = 268

 Score =  183 bits (467), Expect = 4e-53
 Identities = 35/173 (20%), Positives = 78/173 (45%), Gaps = 6/173 (3%)

Query: 180 RRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVL 239
            RI ++ +     L +  + +  F+  L  +++   + ++PIL+  + ++  +  P    
Sbjct: 32  ERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLDPTYQR 91

Query: 240 EHQ-IQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYST 298
           + + + VR     +   LR +   DI +LITI+G++++ + +   + +A ++ I  +   
Sbjct: 92  DIEKVHVRIVGIPRVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQ 151

Query: 299 TVEIDR-----GRIHEPTLCTNCSTNHCFSLVHNRSHFTDKQLVRLQETPAEI 346
             E          +  PT+C  C     F L+  ++   D Q   +QE P E+
Sbjct: 152 EFEWPEDEEMPEVLEMPTICPKCGKPGQFRLIPEKTKLIDWQKAVIQERPEEV 204

>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus} Length = 268

 Score = 91.6 bits (228), Expect = 1e-20
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 1   MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVH 60
           +P+GQ P  + +   +DLVDS +PGDRV VTGI        +P  R  ++V+  ++ V  
Sbjct: 204 VPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQ--DSPVKRGSRAVFDIYMKVSS 261

Query: 61  FRKID 65
                
Sbjct: 262 IEVSQ 266

>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11 Length = 279

 Score =  176 bits (448), Expect = 2e-50
 Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 6/154 (3%)

Query: 193 LNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLEHQIQVRPFNAKK 252
           + V+   L  FD  L   L+  P +VI      +      R         + +R      
Sbjct: 44  IEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNIDRLRK-----NVDLNIRFSGISN 98

Query: 253 TRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTL 312
              LR L  + I + + ++G+V +T  I P + +A F C  C     V      I EP+L
Sbjct: 99  VIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAVTQSTNMITEPSL 158

Query: 313 CTNCSTNHCFSLVHNRSHFTDKQLVRLQETPAEI 346
           C+ C     F L+ + S F D Q ++LQE    +
Sbjct: 159 CSECG-GRSFRLLQDESEFLDTQTLKLQEPLENL 191

>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11 Length = 279

 Score =  105 bits (264), Expect = 2e-25
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 13/100 (13%)

Query: 1   MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVH 60
           +  G+ P  + +   +DLVD++ PGD V VTG  R V  +   R ++   +Y  + + + 
Sbjct: 191 LSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVRDERTKRFKNF--IYGNYTEFLE 248

Query: 61  FRKIDATRLYKQDEKEHKFPPERVELLKSLSRKPDIYERL 100
                      Q+ +E +   E  E +K L+  P+IYE++
Sbjct: 249 -----------QEFEELQISEEDEEKIKELAGDPNIYEKI 277

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 75.3 bits (184), Expect = 4e-14
 Identities = 78/518 (15%), Positives = 157/518 (30%), Gaps = 147/518 (28%)

Query: 223 DMGVNEYFFERHPAAVLEHQIQ--VRPFNAKKTRN-LRH-LNPEDIDQLITINGMVIRTS 278
           + G ++Y ++     +L       V  F+ K  ++  +  L+ E+ID +I     V  T 
Sbjct: 10  ETGEHQYQYKD----ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 279 NII-------PEMREAFFRCIV-CNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNRSH 330
            +         EM + F   ++  NY   +   +    +P++ T          ++N + 
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR-MYIEQRDRLYNDNQ 124

Query: 331 -FTDKQLVR----------LQETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKG 379
            F    + R          L E     N+L+ G  G+ K+                    
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-------------------- 164

Query: 380 SSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFD------KMSDTTRSILHEVM 433
                               +     V     V C  +F       K  ++  ++L    
Sbjct: 165 -------------------WV--ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL---E 200

Query: 434 EQQTLSIAKAGIICQLNARTSILAAA-NPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLL 492
             Q L      I     +R+   +       S     + ++ +    + L        L+
Sbjct: 201 MLQKLLYQ---IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--------LV 249

Query: 493 LDPQSEQFDARLARHLDI--TVL---RD-----------YIAYAQEHLSPTLSEEASQRL 536
           L       +A+     ++   +L   R                + +H S TL+ +  + L
Sbjct: 250 LL---NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 537 IQTYVDMRKLGAGRGRISAYPRQLE--SLIRLSEAHAKMRYSETVEVQDVDEAWRLHREA 594
           +  Y+D         R    PR++   +  RLS     +R        D    W    + 
Sbjct: 307 LLKYLDC--------RPQDLPREVLTTNPRRLSIIAESIR--------DGLATW----DN 346

Query: 595 LKQSATDPLSGKIDVSILTTGVSSAARQRQLELTAALKKLVILLGPSVTVTQQKLIMDLK 654
            K    D L+  I+ S+              E      +L +   PS  +    L +   
Sbjct: 347 WKHVNCDKLTTIIESSL--------NVLEPAEYRKMFDRLSVFP-PSAHIPTILLSL--- 394

Query: 655 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSI 692
             +         +   +K+     S++ +  ++ T+SI
Sbjct: 395 --IWFDVIKSDVMVVVNKLHK--YSLVEKQPKESTISI 428

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 9e-11
 Identities = 96/658 (14%), Positives = 197/658 (29%), Gaps = 190/658 (28%)

Query: 60  HFRKIDATRLYKQDEKEHKF----PPERVELLKSLSRKPDI--YER--LTSAICPSIYGY 111
           H   +D    ++  E ++++           + +   K D+    +  L+      I   
Sbjct: 3   HHHHMD----FETGEHQYQYKDILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMS 57

Query: 112 EDVKKGIMLQMFGGTKKTFDETISDRMSEID------LASPLNYGT--PSSIGSL-RTPR 162
           +D   G +  +F       +E +   + E+       L SP+      PS +  +    R
Sbjct: 58  KDAVSGTLR-LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 163 SGIQGTPIRLRPDIRTDRRIRQIFSLE------DPVLNVNLAH---------LAKFDSQL 207
             +            +  R++    L        P  NV +           +A      
Sbjct: 117 DRLYNDNQVFAKYNVS--RLQPYLKLRQALLELRPAKNVLI-DGVLGSGKTWVAL----- 168

Query: 208 CQQLVCYPQEVIPILDMGVNEYFF------ERHPAAVLEHQ----IQVRP---FNAKKTR 254
               VC   +V   +D  +    F         P  VLE       Q+ P     +  + 
Sbjct: 169 ---DVCLSYKVQCKMDFKI----FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 255 NLRHLNPEDIDQLITI--------NGMVI----RTSNIIPEMREAF-FRC--IVCNYSTT 299
           N++ L    I   +          N +++    + +        AF   C  ++    TT
Sbjct: 222 NIK-LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW----NAFNLSCKILL----TT 272

Query: 300 VEIDRGRIHEPTLCTNCSTNHCFSLVHNRSHFTDKQLVRL---------QETPAE---IN 347
                 R  + T   + +T    SL H+    T  ++  L         Q+ P E    N
Sbjct: 273 ------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 348 ILLCGDPGTSKSQLLSYVYDLVPRSQY----TSGKGSSAVGLTAYITKDPETRQM----- 398
                    S         D +            K ++ +  +  + +  E R+M     
Sbjct: 327 PRRLSIIAESIR-------DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 399 VLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNART-SI-- 455
           V    A +   + +  +  FD +      ++++ + + +L      +  Q    T SI  
Sbjct: 380 VFPPSAHI--PTILLSLIWFDVIKSDVMVVVNK-LHKYSL------VEKQPKESTISIPS 430

Query: 456 --LAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVL 513
             L      ++++   ++I+D+  +P      FD   L+     + F             
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIP----KTFDSDDLIPPYLDQYF------------- 473

Query: 514 RDYIAYAQEHLSPTLSEEASQRLIQTYVDMR----KL--------GAG------------ 549
             +I +   HL      E        ++D R    K+         +G            
Sbjct: 474 YSHIGH---HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530

Query: 550 RGRIS----AYPRQLESLIRLSEAHA----KMRYSETVEVQDVDEAWRLHREALKQSA 599
           +  I      Y R + +++             +Y++ + +  + E   +  EA KQ  
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Length = 350

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 47/293 (16%), Positives = 88/293 (30%), Gaps = 60/293 (20%)

Query: 347 NILLCGDPGTSKSQLLSYVYDLVPR------SQYTSGKGSSAVGLTAYITKDPETRQM-- 398
            +L+ GD GT KS  +  +  L+P          +S            ++ +   +    
Sbjct: 47  GVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPV 106

Query: 399 ---------------------------VLQTGALVLADSGVCCIDEFDKMSDTTRSILHE 431
                                        + G L  A+ G   IDE + + D    +L +
Sbjct: 107 VDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLD 166

Query: 432 VMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL--- 488
           V +     + + G+  +  AR  ++ + NP +        ++D   L   +LS  D+   
Sbjct: 167 VAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDL--RPQLLDRFGLSVEVLSPRDVETR 224

Query: 489 -----IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSP-TLSEEASQRLIQTYVD 542
                     D   + F            +R+ I  A+E L        A        + 
Sbjct: 225 VEVIRRRDTYDADPKAFLEEWRP--KDMDIRNQILEARERLPKVEAPNTALYDCAALCIA 282

Query: 543 MRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL---HR 592
           +   G  R            L+R + A A +  +  V    +     +   HR
Sbjct: 283 LGSDGL-R----GELT----LLRSARALAALEGATAVGRDHLKRVATMALSHR 326

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Length = 350

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 15/61 (24%), Positives = 29/61 (47%)

Query: 655 GALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC 714
           G L  A+ G   IDE + + D    +L +V +     + + G+  +  AR  ++ + NP 
Sbjct: 138 GLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPE 197

Query: 715 D 715
           +
Sbjct: 198 E 198

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Length = 604

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 40/224 (17%), Positives = 82/224 (36%), Gaps = 32/224 (14%)

Query: 403 GALVLADSGVCCIDEFDKMSDTTR----SILHEV---MEQQ-----TLSIAKAGIICQLN 450
           G +  A  GV  IDE   +S   +    + + E    +  Q        +    + C   
Sbjct: 195 GMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDF- 253

Query: 451 ARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDI 510
               ++AA N            +D +     L SR       +  ++   D    R   +
Sbjct: 254 ---VLVAAGNL---------DTVDKM--HPALRSRIRGYGYEVYMRTTMPDTIENRRKLV 299

Query: 511 TVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH 570
             +   +   ++   P  ++EA + +++      K    +G ++   R L  ++R +   
Sbjct: 300 QFVAQEV--KRDGKIPHFTKEAVEEIVREAQ---KRAGRKGHLTLRLRDLGGIVRAAGDI 354

Query: 571 AKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSILTT 614
           A  +  + VE +DV EA ++ +   KQ A   +  K +  ++ T
Sbjct: 355 AVKKGKKYVEREDVIEAVKMAKPLEKQLADWYIERKKEYQVIKT 398

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	720
3f8t_A	506	Predicted ATPase involved in replication control,	100.0
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	100.0
2vl6_A	268	SSO MCM N-TER, minichromosome maintenance protein	99.96
1ltl_A	279	DNA replication initiator (CDC21/CDC54); HET: DNA;	99.96
2r44_A	331	Uncharacterized protein; putative ATPase, structur	99.88
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	99.88
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	99.86
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	99.86
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.76
1ltl_A	279	DNA replication initiator (CDC21/CDC54); HET: DNA;	99.69
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.58
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	99.57
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	99.57
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	99.55
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	99.53
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.48
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	99.46
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	99.43
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	99.41
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.4
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.4
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	99.38
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.37
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	99.36
2vl6_A	268	SSO MCM N-TER, minichromosome maintenance protein	99.36
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.36
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	99.35
3pvs_A	447	Replication-associated recombination protein A; ma	99.33
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.33
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	99.32
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.3
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.29
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	99.28
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.28
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.28
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.27
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.26
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.26
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	99.25
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.25
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.25
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.24
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.23
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.23
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.22
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.21
3co5_A	143	Putative two-component system transcriptional RES	99.18
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	99.16
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.14
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	99.12
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.12
3bos_A	242	Putative DNA replication factor; P-loop containing	99.12
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.11
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.11
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.09
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	99.06
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	99.06
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.04
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.04
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.03
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.03
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	99.02
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.0
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	98.99
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.99
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.98
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.97
2chq_A	319	Replication factor C small subunit; DNA-binding pr	98.96
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.94
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	98.94
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.93
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.89
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	98.84
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.83
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.83
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	98.82
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.79
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	98.78
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	98.78
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.77
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.76
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.69
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	98.67
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	98.66
3f8t_A	506	Predicted ATPase involved in replication control,	98.65
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.61
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	98.58
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	98.54
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	98.53
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.47
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.45
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	98.44
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	98.44
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.31
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	98.14
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.06
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.96
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	97.72
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.57
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	97.55
2qgz_A	308	Helicase loader, putative primosome component; str	97.18
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	97.09
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.84
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	96.6
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	95.56
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.41
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	94.85
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	94.67
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	94.59
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	94.26
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	94.11
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	93.57
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	93.52
1via_A	175	Shikimate kinase; structural genomics, transferase	93.47
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	93.39
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	93.35
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	93.15
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	93.13
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	92.92
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	92.88
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	92.84
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	92.83
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	92.71
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	92.45
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	92.43
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	92.34
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	92.32
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	92.3
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	92.3
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	92.27
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	92.2
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	92.2
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	92.09
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	92.06
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	92.03
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	92.03
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	92.0
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	92.0
2r44_A	331	Uncharacterized protein; putative ATPase, structur	91.98
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	91.94
2vli_A	183	Antibiotic resistance protein; transferase, tunica	91.92
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	91.9
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	91.86
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	91.85
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	91.72
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	91.71
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	91.7
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	91.68
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	91.68
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	91.53
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	91.47
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	91.47
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	91.46
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	91.36
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	91.36
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	91.32
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	91.31
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	91.3
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	91.29
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	91.29
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	90.94
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	90.92
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	90.86
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	90.86
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	90.65
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	90.61
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	90.5
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	90.44
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	90.43
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	90.39
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	90.35
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	90.34
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	90.23
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	90.21
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	90.19
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	90.12
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	90.1
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	90.06
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	90.05
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	90.02
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	90.01
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	89.99
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	89.98
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	89.97
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	89.95
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	89.8
4a74_A	231	DNA repair and recombination protein RADA; hydrola	89.77
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	89.76
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	89.67
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	89.66
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	89.65
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	89.64
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	89.63
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	89.63
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	89.59
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	89.58
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	89.58
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	89.57
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	89.49
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	89.49
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	89.42
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	89.38
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	89.33
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	89.33
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	89.33
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	89.32
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	89.27
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	89.24
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	89.18
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	89.1
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	89.09
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	89.06
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	89.05
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	89.03
2cvh_A	220	DNA repair and recombination protein RADB; filamen	89.01
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	88.99
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	88.98
1nrj_B	218	SR-beta, signal recognition particle receptor beta	88.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	88.93
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	88.88
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	88.84
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	88.83
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	88.8
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	88.78
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	88.71
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	88.69
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	88.54
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	88.51
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	88.46
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	88.43
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	88.43
2wji_A	165	Ferrous iron transport protein B homolog; membrane	88.4
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	88.39
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	88.35
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	88.33
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	88.31
2ged_A	193	SR-beta, signal recognition particle receptor beta	88.27
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	88.26
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	88.26
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	88.19
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	88.18
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	88.17
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	88.16
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	88.1
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	88.09
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	88.08
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	88.05
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	88.03
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	88.01
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	88.0
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	87.96
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	87.92
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	87.92
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	87.91
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	87.88
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	87.86
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	87.85
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	87.83
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	87.75
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	87.71
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	87.69
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	87.69
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	87.65
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	87.64
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	87.64
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	87.61
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	87.57
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	87.56
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	87.5
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	87.45
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	87.45
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	87.44
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	87.42
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	87.38
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	87.38
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	87.33
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	87.29
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	87.27
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	87.24
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	87.2
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	87.15
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	87.12
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	87.11
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	87.1
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	87.08
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	87.08
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	87.06
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	87.03
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	87.0
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	86.97
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	86.95
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	86.89
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	86.87
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	86.82
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	86.77
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	86.69
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	86.63
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	86.61
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	86.57
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	86.56
3llu_A	196	RAS-related GTP-binding protein C; structural geno	86.52
1sgw_A	214	Putative ABC transporter; structural genomics, P p	86.49
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	86.45
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	86.37
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	86.35
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	86.35
2eyu_A	261	Twitching motility protein PILT; pilus retraction	86.34
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	86.28
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	86.24
1g6h_A	257	High-affinity branched-chain amino acid transport	86.2
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	86.19
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	86.19
1b0u_A	262	Histidine permease; ABC transporter, transport pro	86.11
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	86.11
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	86.04
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	86.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	85.99
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	85.98
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	85.96
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	85.95
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	85.94
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	85.92
2fna_A	357	Conserved hypothetical protein; structural genomic	85.87
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	85.84
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	85.8
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	85.79
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	85.77
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	85.76
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	85.72
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	85.71
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	85.7
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	85.7
1ji0_A	240	ABC transporter; ATP binding protein, structural g	85.66
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	85.62
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	85.57
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	85.56
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	85.53
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	85.52
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	85.52
3kta_A	182	Chromosome segregation protein SMC; structural mai	85.48
2fh5_B	214	SR-beta, signal recognition particle receptor beta	85.4
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	85.37
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	85.28
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	85.24
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	85.2
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	85.2
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	85.15
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	85.13
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	85.12
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	85.11
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	85.1
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	85.07
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	85.07
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	84.98
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	84.95
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	84.93
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	84.92
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	84.81
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	84.72
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	84.7
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	84.68
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	84.61
1p9r_A	418	General secretion pathway protein E; bacterial typ	84.54
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	84.53
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	84.25
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	84.24
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	84.2
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	84.19
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	84.15
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	84.08
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	84.07
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	84.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	83.92
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	83.91
2ghi_A	260	Transport protein; multidrug resistance protein, M	83.9
2ewv_A	372	Twitching motility protein PILT; pilus retraction	83.89
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	83.86
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	83.85
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	83.79
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	83.61
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	83.46
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	83.42
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	83.39
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	83.31
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	83.24
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	83.15
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	83.11
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	83.09
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	83.07
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	83.02
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	82.88
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	82.86
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	82.84
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	82.81
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	82.74
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	82.68
2z43_A	324	DNA repair and recombination protein RADA; archaea	82.57
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	82.54
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	82.51
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	82.31
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	82.31
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	82.31
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	82.21
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	82.19
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	82.18
2hf9_A	226	Probable hydrogenase nickel incorporation protein	82.15
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	82.0
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	81.97
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	81.91
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	81.82
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	81.73
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	81.47
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	81.44
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	81.41
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	81.36
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	81.34
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	81.3
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	81.27
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	81.25
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	81.17
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	81.16
3io5_A	333	Recombination and repair protein; storage dimer, i	81.09
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	81.06
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	81.06
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	81.03
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	80.98
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	80.97
2kdx_A	119	HYPA, hydrogenase/urease nickel incorporation prot	80.94
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	80.85
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	80.74
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	80.71
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	80.69
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	80.61
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	80.56
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	80.53
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	80.42
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	80.41
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	80.39
1lko_A	191	Rubrerythrin all-iron(II) form; reduced form, DIIR	80.22
3a43_A	139	HYPD, hydrogenase nickel incorporation protein HYP	80.18
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	80.82

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=100.00  E-value=5.2e-70  Score=595.59  Aligned_cols=363  Identities=34%  Similarity=0.470  Sum_probs=311.4

Q ss_pred             CCCCCCceEEEEEEcccccc------cccCCCeEEEEEEEEeccCCCCccccccccceeEEEEEEEEEEecccccccccc
Q psy17703          1 MPAGQTPHSVVLFTYNDLVD------SIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQDE   74 (720)
Q Consensus         1 VP~G~~Prsi~v~~~~dLvd------~~~PGD~V~vtGi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   74 (720)
                      ||.|++||+++|++++||||      +|+|||+|+|+|||++.                 |++++|+++.       +..
T Consensus       128 ~~~G~~Prsi~v~l~~dLvd~~~~~~~~~pGd~V~v~GI~~~~-----------------~l~a~~i~~~-------~~~  183 (506)
T 3f8t_A          128 VRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVRSA-----------------TLDALEVHKK-------DPI  183 (506)
T ss_dssp             EEESSSEEEEEEECSSSEEEEECTTCCCCTTCEEEEEEEEETT-----------------EEEEEEEEEE-------CSS
T ss_pred             CCCCCCCceEEEEecccccCcccccccccCCCEEEEEEEEEEe-----------------EEEEEEEEEc-------Ccc
Confidence            68999999999999999999      99999999999999853                 8999999872       123


Q ss_pred             cCCCCChHHHHHHHhhhcCCcHHHHHHHhhchhccCchhhHHHHHHHhhCCcccccccccccCCcccccCCCcccCCCCC
Q psy17703         75 KEHKFPPERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSS  154 (720)
Q Consensus        75 ~~~~~~~~~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk~lll~L~GG~~k~~~~~~~~~~~~~~~~~~l~~g~~~~  154 (720)
                      ....||+++++.|++++++ ++|++|++|||| ||||++||+||+|+|+||.+|.                         
T Consensus       184 ~~~~~t~ed~~~i~~l~~~-~~~~~l~~sIap-I~G~e~vK~aLll~L~GG~~k~-------------------------  236 (506)
T 3f8t_A          184 PEVHPDPAELEEFRELADK-DPLTTFARAIAP-LPGAEEVGKMLALQLFSCVGKN-------------------------  236 (506)
T ss_dssp             CCCCCCHHHHHHHHHHHHS-CHHHHHHHHHCC-STTCHHHHHHHHHHHTTCCSSG-------------------------
T ss_pred             ccCCCCHHHHHHHHHHHHH-HHHHHHHHHhcc-cCCCHHHHHHHHHHHcCCcccc-------------------------
Confidence            4567999999999999999 999999999999 9999999999999999999651                         


Q ss_pred             ccccccCCCCCcCCccccCCCchhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhC
Q psy17703        155 IGSLRTPRSGIQGTPIRLRPDIRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERH  234 (720)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~  234 (720)
                                                                                                      
T Consensus       237 --------------------------------------------------------------------------------  236 (506)
T 3f8t_A          237 --------------------------------------------------------------------------------  236 (506)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccceEEEecCCccccccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCC
Q psy17703        235 PAAVLEHQIQVRPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCT  314 (720)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~  314 (720)
                                                                                           +          
T Consensus       237 ---------------------------------------------------------------------r----------  237 (506)
T 3f8t_A          237 ---------------------------------------------------------------------S----------  237 (506)
T ss_dssp             ---------------------------------------------------------------------G----------
T ss_pred             ---------------------------------------------------------------------C----------
Confidence                                                                                 0          


Q ss_pred             CCCCCCcceeeccCCccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHH-HhhCCCCccccCCccccccccceeecCc
Q psy17703        315 NCSTNHCFSLVHNRSHFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYV-YDLVPRSQYTSGKGSSAVGLTAYITKDP  393 (720)
Q Consensus       315 ~C~~~~~~~~~~~~s~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~v-a~~~pr~~~~~g~~ss~~glta~~~~~~  393 (720)
                                                   +++||||+|+||| ||+||+++ ++++||.+|++|..++..++++. .+++
T Consensus       238 -----------------------------gdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s-~r~~  286 (506)
T 3f8t_A          238 -----------------------------ERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAV-LKED  286 (506)
T ss_dssp             -----------------------------GCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEE-EEES
T ss_pred             -----------------------------CceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEE-EEcC
Confidence                                         5899999999999 99999999 99999999999998888899988 6666


Q ss_pred             cccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccc
Q psy17703        394 ETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTII  473 (720)
Q Consensus       394 ~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~  473 (720)
                       +| |.+++|++++||+|+||+|||++|+++.|++||++||++++++.  |.  ++|++|+||||+||++ +|+..+++ 
T Consensus       287 -tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~--G~--~lparf~VIAA~NP~~-~yd~~~s~-  358 (506)
T 3f8t_A          287 -RG-WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD--GI--ALNARCAVLAAINPGE-QWPSDPPI-  358 (506)
T ss_dssp             -SS-EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET--TE--EEECCCEEEEEECCCC---CCSCGG-
T ss_pred             -CC-cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC--CE--EcCCCeEEEEEeCccc-ccCCCCCc-
Confidence             78 99999999999999999999999999999999999999999996  76  9999999999999999 89888888 


Q ss_pred             cccCCChhhhccceeEEEecCCChHHHHHH-HHhhcchhHHHHHHHHHH-hhcCCcchHHHHHHHHHHHHHhhhcCC---
Q psy17703        474 DNIRLPHTLLSRFDLIFLLLDPQSEQFDAR-LARHLDITVLRDYIAYAQ-EHLSPTLSEEASQRLIQTYVDMRKLGA---  548 (720)
Q Consensus       474 ~~~~l~~aLlsRFdli~~l~d~~~~~~d~~-la~~i~~~~l~~~i~~ar-~~~~p~ls~ea~~~l~~~y~~lr~~~~---  548 (720)
                      +|+.||++++||||+++.+.|.++++.|.. ....++.+.+++|+.||| ++++|.+++++.+.|.++|..+|....   
T Consensus       359 ~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~  438 (506)
T 3f8t_A          359 ARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERL  438 (506)
T ss_dssp             GGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCccccc
Confidence            999999999999999999998887766542 223458899999999999 788999999999999999999997311   


Q ss_pred             --CCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHHHHHHhccCCCCCcceeeee
Q psy17703        549 --GRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLHREALKQSATDPLSGKIDVSIL  612 (720)
Q Consensus       549 --~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~~~l~~~~~d~~~g~~d~~~~  612 (720)
                        ....+++|+|++++|+|+|+|+|+|++|+.|+++|+.+|++|++.|++++++||++|.+|++++
T Consensus       439 ~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~~~a~dp~tg~id~~~~  504 (506)
T 3f8t_A          439 GMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLETAMQIPGGDEIRISSL  504 (506)
T ss_dssp             HTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHTTC------------
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhcCCCCCCeEeEEec
Confidence              1246789999999999999999999999999999999999999999999999999999999876

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=100.00  E-value=7.5e-68  Score=611.70  Aligned_cols=423  Identities=37%  Similarity=0.607  Sum_probs=394.2

Q ss_pred             chhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCcccccc-cceEEEecCCcccc
Q psy17703        176 IRTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLE-HQIQVRPFNAKKTR  254 (720)
Q Consensus       176 ~~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  254 (720)
                      ..|...+++|...++.+|.||++||..||++|++.|+++|.+++++|+.|+++++...+|+.... .+++++++|+|...
T Consensus        22 ~~y~~~i~~~~~~~~~~l~v~~~~l~~~~~~l~~~l~~~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  101 (595)
T 3f9v_A           22 NKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLDPTYQRDIEKVHVRIVGIPRVI  101 (595)
T ss_dssp             CTTHHHHHHHHHHTCSSCCEEHHHHHTTCTTHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGTTTCCCCCCCEECCSCEE
T ss_pred             hhHHHHHHHHHHcCCcEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHHHHhhchhhhhccceEEEEEeCCCCCC
Confidence            35778899999999999999999999999999999999999999999999999987766665433 36899999999999


Q ss_pred             ccccCCCcCCCceEEEeeEEEEecccchhhhhheeeccc--CCceeeee---eccCcccCCccCCCCCCCCcceeeccCC
Q psy17703        255 NLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIV--CNYSTTVE---IDRGRIHEPTLCTNCSTNHCFSLVHNRS  329 (720)
Q Consensus       255 ~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~--Cg~~~~~~---~~~~~~~~p~~C~~C~~~~~~~~~~~~s  329 (720)
                      .+|+|+++++|+||+|+|+|+|+|.|+|+++++.|.|..  ||++..++   ...+.+.+|..||+|++.++|.+.++.|
T Consensus       102 ~~r~l~~~~i~~lv~v~G~V~r~s~v~~~~~~~~~~C~~~~C~~~~~~~~~~~~~~~~~~p~~C~~C~~~~~~~~~~~~s  181 (595)
T 3f9v_A          102 ELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKPGQFRLIPEKT  181 (595)
T ss_dssp             CGGGCCGGGTTCCEEEEEEEEEECCCEEEEEECCCEEESSSCCCBCCSSCSSCCCSSCCCCSSCTTTCCCSEEECCSTTC
T ss_pred             ChhhcchhhCCcEEEEEEEEEEecCEEEEEEEEEEEecCCCCCCEEEEEeccccCCcccCCCcCCCCCCCCceEEeccCc
Confidence            999999999999999999999999999999999999999  99998876   3457899999999999988999999999


Q ss_pred             ccchhhhhhhhcCC------------------------------------------------------------------
Q psy17703        330 HFTDKQLVRLQETP------------------------------------------------------------------  343 (720)
Q Consensus       330 ~~~d~Q~iklQE~p------------------------------------------------------------------  343 (720)
                      +|+|||++++||.|                                                                  
T Consensus       182 ~~~d~Q~i~iQe~~~~~~~g~~pr~~~v~l~~dlv~~~~pGd~v~v~Gi~~~~~~~~~~~~~~~~~~~~i~a~~i~~~~~  261 (595)
T 3f9v_A          182 KLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQK  261 (595)
T ss_dssp             EEEEEEEEEEECCTTTSCTTSCCCEEEEEEEGGGTTCSCSSCEEEEEEECCCCCSSTTSCTTCCCCCCCCEEEEEEECCC
T ss_pred             eeeeeEEEEEEeccccCCCCCCCceEEEEEecccccccccCCEEEEEEEEEecccccccCCCcceEEEEEEEEeeccccc
Confidence            99999999999987                                                                  


Q ss_pred             ---------------------------------------------------CC-------------ccEEEEcCCCCHHH
Q psy17703        344 ---------------------------------------------------AE-------------INILLCGDPGTSKS  359 (720)
Q Consensus       344 ---------------------------------------------------g~-------------i~vLL~G~PGtGKS  359 (720)
                                                                         +.             +||||+||||||||
T Consensus       262 ~~~~~~~t~~~~~~i~~~~~~~~~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT  341 (595)
T 3f9v_A          262 VLDEVIISEEDEKKIKDLAKDPWIRDRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKS  341 (595)
T ss_dssp             CCCCCCCTTSTHHHHHTTSSTTTGGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHH
T ss_pred             ccccCCCCHHHHHHHHHHhhCcHHHHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHH
Confidence                                                               33             29999999999999


Q ss_pred             HHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEe
Q psy17703        360 QLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLS  439 (720)
Q Consensus       360 ~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vs  439 (720)
                      +||+++++.+++..++.+.+.+..++++...++..++.+..++|++.+|++|+|||||||+|+++.+++|+++||+++++
T Consensus       342 ~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~  421 (595)
T 3f9v_A          342 QMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVS  421 (595)
T ss_dssp             HHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEE
T ss_pred             HHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEE
Confidence            99999999999999998888899999999888888889999999999999999999999999999999999999999999


Q ss_pred             eeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHHHhhc-----------
Q psy17703        440 IAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL-----------  508 (720)
Q Consensus       440 i~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i-----------  508 (720)
                      +.++|....+++++++|||+||..|+|++.+++.+|+.|+++|+||||+++.+.+.++++ +..|++|+           
T Consensus       422 i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~  500 (595)
T 3f9v_A          422 IAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKN  500 (595)
T ss_dssp             EESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSS
T ss_pred             EecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhcccccc
Confidence            999999999999999999999999999999999999999999999999999999999988 88888875           


Q ss_pred             --chhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCC--CcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhH
Q psy17703        509 --DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRG--RISAYPRQLESLIRLSEAHAKMRYSETVEVQDV  584 (720)
Q Consensus       509 --~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~--~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv  584 (720)
                        +.+.+++|+.||++.++|.+++++.+.|.++|.++|......+  .+++|+|++++++|+|+|+|++++++.|+.+|+
T Consensus       501 ~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv  580 (595)
T 3f9v_A          501 IIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDA  580 (595)
T ss_dssp             TTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHH
Confidence              4578999999999999999999999999999999998765433  688999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q psy17703        585 DEAWRLHREALKQSA  599 (720)
Q Consensus       585 ~~Ai~l~~~~l~~~~  599 (720)
                      .+|+++++.++++++
T Consensus       581 ~~Ai~l~~~sl~~~~  595 (595)
T 3f9v_A          581 ERAINIMRLFLESVG  595 (595)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999998753

>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}

Probab=99.96  E-value=1.6e-29  Score=263.76  Aligned_cols=170  Identities=20%  Similarity=0.398  Sum_probs=157.2

Q ss_pred             hhhHHHHHHHhcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCcccc-cccceEEEecCCccccc
Q psy17703        177 RTDRRIRQIFSLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAV-LEHQIQVRPFNAKKTRN  255 (720)
Q Consensus       177 ~~~~~~r~~~~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  255 (720)
                      .|...+++|...++.+|.||++||..||++||+.|+++|.+++++|+.|+++++....|+.. ...++++|++|++....
T Consensus        29 ~Y~~~i~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~vr~~~~~~~~~  108 (268)
T 2vl6_A           29 KYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQLDPTYQRDIEKVHVRIVGIPRVIE  108 (268)
T ss_dssp             TTHHHHHHHHHTTCCCEEEEHHHHHHHCHHHHHHHHHHTTTTHHHHHHHHHHHHHTTCGGGTTTCSCCCEEEECCSCEEC
T ss_pred             HHHHHHHHHHHcCCcEEEEEHHHHHhhhHHHHHHHHHCHHHHHHHHHHHHHHHHHHhCchhhccCccEEEEEECCCCCCc
Confidence            46777999999999999999999999999999999999999999999999999877665543 23579999999999999


Q ss_pred             cccCCCcCCCceEEEeeEEEEecccchhhhhheeec--ccCCceeeee---eccCcccCCccCCCCCCCCcceeeccCCc
Q psy17703        256 LRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRC--IVCNYSTTVE---IDRGRIHEPTLCTNCSTNHCFSLVHNRSH  330 (720)
Q Consensus       256 ~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C--~~Cg~~~~~~---~~~~~~~~p~~C~~C~~~~~~~~~~~~s~  330 (720)
                      +|+|+++++||||+|+|+|+|+|.|+|++++++|.|  ..||++..+.   +..+.+.+|..||.|++.++|.++++.|+
T Consensus       109 iR~l~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~~~C~~~~~~~~~~~~~~~~~~P~~Cp~C~~~~~~~l~~~~s~  188 (268)
T 2vl6_A          109 LRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKPGQFRLIPEKTK  188 (268)
T ss_dssp             GGGCCGGGTTSEEEEEEEEEEECCCEEEEEECEEEEECTTCCCEEESSTTSCCCTTCCCCSBCTTTCCBCEEEECGGGCE
T ss_pred             cccCChhHCCCeEEEEEEEEEcCCcceEeEEEEEECCCCCCCCEEeeeecccCCCcccCCccCCCCCCCCCEEEecCccE
Confidence            999999999999999999999999999999999999  9999999888   66788999999999999889999999999


Q ss_pred             cchhhhhhhhcCCCCc
Q psy17703        331 FTDKQLVRLQETPAEI  346 (720)
Q Consensus       331 ~~d~Q~iklQE~pg~i  346 (720)
                      |.|||++++||.|+++
T Consensus       189 f~D~Q~ikiQE~pe~v  204 (268)
T 2vl6_A          189 LIDWQKAVIQERPEEV  204 (268)
T ss_dssp             EEEEEEEEEECCGGGS
T ss_pred             EEeeEEEEEEeCCCCC
Confidence            9999999999998544

>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11

Probab=99.96  E-value=5e-29  Score=261.22  Aligned_cols=170  Identities=24%  Similarity=0.419  Sum_probs=154.0

Q ss_pred             ccCCCc---hhhHHHHHHH--hcCCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCcccccccceEE
Q psy17703        171 RLRPDI---RTDRRIRQIF--SLEDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLEHQIQV  245 (720)
Q Consensus       171 ~~~~~~---~~~~~~r~~~--~~~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~  245 (720)
                      +|+.|+   .|...+++|.  ..+..+|.||++||..||++||+.|+++|.+++++|+.|++++.  .+..  .. ++++
T Consensus        17 ~f~~Fl~~~~Y~~~i~~~~~~~~~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~~--~~~~--~~-~~~v   91 (279)
T 1ltl_A           17 KFEEFFSLQDYKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNID--RLRK--NV-DLNI   91 (279)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHHHHTTTC--TTCC--CC-CCEE
T ss_pred             HHHHHhccchHHHHHHHHHhhCCCCeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHhc--cccC--Ce-eEEE
Confidence            455554   3567789998  78899999999999999999999999999999999999998874  1211  12 7999


Q ss_pred             EecCCccccccccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCCCCCCCcceee
Q psy17703        246 RPFNAKKTRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLV  325 (720)
Q Consensus       246 ~~~~~~~~~~~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~~~~~  325 (720)
                      |+.|++....+|+|+++++||||+|+|+|+|+|.|+|++++++|.|..||++.++++..+.+.+|..||+|++.+ |.++
T Consensus        92 r~~~~~~~~~iR~L~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~~-f~l~  170 (279)
T 1ltl_A           92 RFSGISNVIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAVTQSTNMITEPSLCSECGGRS-FRLL  170 (279)
T ss_dssp             EEECCSCBCCGGGCCGGGTTSEEEEEEEEEEECCCEEEEEEEEEEETTTCCEEEEECSSSSCCCCSCCTTTCCCC-EEEC
T ss_pred             EEECCCCCCCcccCChhhCCCEEEEEEEEEEecceEEEEEEEEEEcCCCCCEEEEEecCCcccCCCcCCCCCCCC-cEEe
Confidence            999999999999999999999999999999999999999999999999999999998888999999999999987 9999


Q ss_pred             ccCCccchhhhhhhhcCCCCc
Q psy17703        326 HNRSHFTDKQLVRLQETPAEI  346 (720)
Q Consensus       326 ~~~s~~~d~Q~iklQE~pg~i  346 (720)
                      ++.|+|.|||++++||.|+.+
T Consensus       171 ~~~s~f~D~Q~ikiQE~pe~v  191 (279)
T 1ltl_A          171 QDESEFLDTQTLKLQEPLENL  191 (279)
T ss_dssp             GGGCEEEEEEEEEEECCSTTC
T ss_pred             ccccEEEeeEEEEEecCcccC
Confidence            999999999999999999665

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=99.88  E-value=2.8e-21  Score=207.52  Aligned_cols=233  Identities=19%  Similarity=0.179  Sum_probs=170.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cC-CccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SG-KGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD  423 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g-~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~  423 (720)
                      .|+||+||||||||++++++++.++...+. .. .......+.+....+...+.+.+.+|.+   .++++||||++++++
T Consensus        47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l---~~~vl~iDEi~~~~~  123 (331)
T 2r44_A           47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPV---FSNFILADEVNRSPA  123 (331)
T ss_dssp             CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTT---CSSEEEEETGGGSCH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCcc---cccEEEEEccccCCH
Confidence            599999999999999999999988654321 11 1111112222222122334455555654   368999999999999


Q ss_pred             HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHH
Q psy17703        424 TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDAR  503 (720)
Q Consensus       424 ~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~  503 (720)
                      +.++.|+++|+++.+++  .|.....+.++.++||+||....        ....++++|++||++.+.+..|+.++....
T Consensus       124 ~~~~~Ll~~l~~~~~~~--~g~~~~~~~~~~viat~np~~~~--------~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~i  193 (331)
T 2r44_A          124 KVQSALLECMQEKQVTI--GDTTYPLDNPFLVLATQNPVEQE--------GTYPLPEAQVDRFMMKIHLTYLDKESELEV  193 (331)
T ss_dssp             HHHHHHHHHHHHSEEEE--TTEEEECCSSCEEEEEECTTCCS--------CCCCCCHHHHTTSSEEEECCCCCHHHHHHH
T ss_pred             HHHHHHHHHHhcCceee--CCEEEECCCCEEEEEecCCCccc--------CcccCCHHHHhheeEEEEcCCCCHHHHHHH
Confidence            99999999999999988  78888899999999999987621        123589999999998899998887777666


Q ss_pred             HHhhcch--------hHHHHHHHHHHhhc-CCcchHHHHHHHHHHHHHhhhcCCCC-------CCcccCHHHHHHHHHHH
Q psy17703        504 LARHLDI--------TVLRDYIAYAQEHL-SPTLSEEASQRLIQTYVDMRKLGAGR-------GRISAYPRQLESLIRLS  567 (720)
Q Consensus       504 la~~i~~--------~~l~~~i~~ar~~~-~p~ls~ea~~~l~~~y~~lr~~~~~~-------~~~~~t~R~le~lirla  567 (720)
                      +..+...        ......+..+++.. ...+++++.+.+.+.+..+|..+...       ....+++|.+..+++++
T Consensus       194 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a  273 (331)
T 2r44_A          194 MRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVA  273 (331)
T ss_dssp             HHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHH
T ss_pred             HHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHH
Confidence            6554321        11233333444322 45689999999998888877653200       12456889999999999


Q ss_pred             HHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703        568 EAHAKMRYSETVEVQDVDEAWRLH  591 (720)
Q Consensus       568 ~A~A~l~~~~~V~~~Dv~~Ai~l~  591 (720)
                      +++|.+++++.|+.+|+.+|+..+
T Consensus       274 ~a~A~l~g~~~v~~~dv~~~~~~v  297 (331)
T 2r44_A          274 KAMAFFNNRDYVLPEDIKEVAYDI  297 (331)
T ss_dssp             HHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCHHHHHHHHHHH
Confidence            999999999999999999998754

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=99.88  E-value=7.2e-22  Score=213.02  Aligned_cols=226  Identities=21%  Similarity=0.252  Sum_probs=170.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccc---------------------------------ccccccee--
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSS---------------------------------AVGLTAYI--  389 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss---------------------------------~~glta~~--  389 (720)
                      ..|+||+||||||||++++++++.+++..+..+....                                 ...+.+..  
T Consensus        45 ~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  124 (350)
T 1g8p_A           45 IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDI  124 (350)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECH
T ss_pred             CceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechh
Confidence            4589999999999999999999998763221110000                                 00000000  


Q ss_pred             ecCccccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCC
Q psy17703        390 TKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTS  469 (720)
Q Consensus       390 ~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~  469 (720)
                      .+....+.+...+|.+..+++|++||||+++++.+.++.|+++|+++...+.+.|.....+.++.+++|+||..+     
T Consensus       125 ~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~-----  199 (350)
T 1g8p_A          125 ERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEG-----  199 (350)
T ss_dssp             HHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSC-----
T ss_pred             hhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCC-----
Confidence            000011224556787788889999999999999999999999999999888889999999999999999998542     


Q ss_pred             cccccccCCChhhhccceeEEEecCCChHHHHHHHHhh----------------cchhHHHHHHHHHHhhcC-CcchHHH
Q psy17703        470 KTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARH----------------LDITVLRDYIAYAQEHLS-PTLSEEA  532 (720)
Q Consensus       470 ~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~----------------i~~~~l~~~i~~ar~~~~-p~ls~ea  532 (720)
                             .++++|++||++.+.+.++++.+.+..+..+                .....+++++.+++.... ..+++++
T Consensus       200 -------~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~  272 (350)
T 1g8p_A          200 -------DLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTA  272 (350)
T ss_dssp             -------CCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHH
T ss_pred             -------CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHH
Confidence                   4889999999998999988766555444433                133456778877775433 3789999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703        533 SQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLH  591 (720)
Q Consensus       533 ~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~  591 (720)
                      .+.|.+++...+..         ++|.+..+++.+.+.|.+++++.|+.+|+.+|+.+.
T Consensus       273 ~~~l~~~~~~~~~~---------~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~  322 (350)
T 1g8p_A          273 LYDCAALCIALGSD---------GLRGELTLLRSARALAALEGATAVGRDHLKRVATMA  322 (350)
T ss_dssp             HHHHHHHHHHSSSC---------SHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC---------CccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence            99999887654321         469999999999999999999999999999998864

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=99.86  E-value=1.7e-22  Score=233.09  Aligned_cols=145  Identities=32%  Similarity=0.500  Sum_probs=125.6

Q ss_pred             CCCCCCceEEEEEEcccccccccCCCeEEEEEEEEeccCCCCccccccccceeEEEEEEEEEEecccccccccccCCCCC
Q psy17703          1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQDEKEHKFP   80 (720)
Q Consensus         1 VP~G~~Prsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   80 (720)
                      +|+|++|||++|++++||||+|+|||+|+|||||++.+...+++  +.+++|++|+++++++..+.      ......+|
T Consensus       198 ~~~g~~pr~~~v~l~~dlv~~~~pGd~v~v~Gi~~~~~~~~~~~--~~~~~~~~~i~a~~i~~~~~------~~~~~~~t  269 (595)
T 3f9v_A          198 VPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPVKR--GSRAVFDIYMKVSSIEVSQK------VLDEVIIS  269 (595)
T ss_dssp             SCTTSCCCEEEEEEEGGGTTCSCSSCEEEEEEECCCCCSSTTSC--TTCCCCCCCCEEEEEEECCC------CCCCCCCT
T ss_pred             CCCCCCCceEEEEEecccccccccCCEEEEEEEEEecccccccC--CCcceEEEEEEEEeeccccc------ccccCCCC
Confidence            69999999999999999999999999999999999988654322  34678999999999987532      22445799


Q ss_pred             hHHHHHHHhhhcCCcHHHHHHHhhchhccCchhhHHHHHHHhhCCcccccccccccCCcccccCCCcccCCCCCcccc
Q psy17703         81 PERVELLKSLSRKPDIYERLTSAICPSIYGYEDVKKGIMLQMFGGTKKTFDETISDRMSEIDLASPLNYGTPSSIGSL  158 (720)
Q Consensus        81 ~~~~~~i~~l~~~~~iy~~l~~SiaPsI~G~~~VKk~lll~L~GG~~k~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~  158 (720)
                      ++++++|.++++++++|+.|.+||+|+||||+++|++++++|+||.+|.+++ ..+++   ++ +.|++|+||++|+.
T Consensus       270 ~~~~~~i~~~~~~~~~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~-~~~r~---~~-~vLL~GppGtGKT~  342 (595)
T 3f9v_A          270 EEDEKKIKDLAKDPWIRDRIISSIAPSIYGHWELKEALALALFGGVPKVLED-TRIRG---DI-HILIIGDPGTAKSQ  342 (595)
T ss_dssp             TSTHHHHHTTSSTTTGGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTT-TEECC---SC-CEEEEESSCCTHHH
T ss_pred             HHHHHHHHHHhhCcHHHHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccC-CCcCC---Cc-ceEEECCCchHHHH
Confidence            9999999999999999999999999999999999999999999999998876 55554   22 48999999998875

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=99.86  E-value=1.1e-20  Score=212.87  Aligned_cols=221  Identities=17%  Similarity=0.155  Sum_probs=150.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCC---ccccCCccccccccceeec--Ccccccee-eecceeeecCCceeeccccc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRS---QYTSGKGSSAVGLTAYITK--DPETRQMV-LQTGALVLADSGVCCIDEFD  419 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~---~~~~g~~ss~~glta~~~~--~~~~~~~~-~~~G~l~lad~gI~~IDEid  419 (720)
                      .|+||+||||||||++++++++.+++.   .+.....++...+.+....  ....+.+. ...|.  ++..+|+|||||+
T Consensus        42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~--l~~~~IL~IDEI~  119 (500)
T 3nbx_X           42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGY--LPEAEIVFLDEIW  119 (500)
T ss_dssp             CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC----------CBCCTTS--GGGCSEEEEESGG
T ss_pred             CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccC--CCcceeeeHHhHh
Confidence            488999999999999999999988542   1111111111111111000  00011111 22232  2346689999999


Q ss_pred             cCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHH
Q psy17703        420 KMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQ  499 (720)
Q Consensus       420 km~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~  499 (720)
                      +++++.++.|+++|+++.+++  .|....++.++ +|+|+||.+.          ...+.+++++||++.+.+.+|..++
T Consensus       120 r~~~~~q~~LL~~lee~~v~i--~G~~~~~~~~~-iI~ATN~lpe----------~~~~~~aLldRF~~~i~v~~p~~~e  186 (500)
T 3nbx_X          120 KAGPAILNTLLTAINERQFRN--GAHVEKIPMRL-LVAASNELPE----------ADSSLEALYDRMLIRLWLDKVQDKA  186 (500)
T ss_dssp             GCCHHHHHHHHHHHHSSEEEC--SSSEEECCCCE-EEEEESSCCC----------TTCTTHHHHTTCCEEEECCSCCCHH
T ss_pred             hhcHHHHHHHHHHHHHHhccC--CCCcCCcchhh-hhhccccCCC----------ccccHHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999988  78888899887 6777786542          1235689999998888888887744


Q ss_pred             -HHHHHHhhc-------------chhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703        500 -FDARLARHL-------------DITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR  565 (720)
Q Consensus       500 -~d~~la~~i-------------~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir  565 (720)
                       ....+..+.             +.+.+..+..+++   ...+++++.+.+.+.+..+|....   ...+|+|.++++++
T Consensus       187 e~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~---~v~v~d~v~e~i~~l~~~lr~~r~---~~~iS~R~~~~llr  260 (500)
T 3nbx_X          187 NFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIG---EITLPDHVFELIFMLRQQLDKLPD---APYVSDRRWKKAIR  260 (500)
T ss_dssp             HHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHT---TCBCCHHHHHHHHHHHHHHHHCSS---SCCCCHHHHHHHHH
T ss_pred             hHHHHHhcccccCCCCCCccceecHHHHHHHHhcCC---cccCchHHHHHHHHHHHHhhcCCC---CCccchhHHHHHHH
Confidence             445555443             2334444444433   456888888888877766555322   33468899999999


Q ss_pred             HHHHHHHHcCCCCCCHHhHHHH
Q psy17703        566 LSEAHAKMRYSETVEVQDVDEA  587 (720)
Q Consensus       566 la~A~A~l~~~~~V~~~Dv~~A  587 (720)
                      +|+|+|.+++++.|+++|+..|
T Consensus       261 ~A~A~A~l~gr~~Vt~eDv~~a  282 (500)
T 3nbx_X          261 LLQASAFFSGRSAVAPVDLILL  282 (500)
T ss_dssp             HHHHHHHHTTCSBCCGGGGGGG
T ss_pred             HHHHHHhhcCCccccchHHHHH
Confidence            9999999999999999999844

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.76  E-value=1.5e-18  Score=201.30  Aligned_cols=165  Identities=21%  Similarity=0.285  Sum_probs=126.8

Q ss_pred             eecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCe----------EEeecCceEEEecccCCCCCCCCC
Q psy17703        400 LQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGI----------ICQLNARTSILAAANPCDSQWNTS  469 (720)
Q Consensus       400 ~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~----------~~~l~a~~~iiaaaNp~~g~~~~~  469 (720)
                      +++|.+..|++|++||||++.|++..++.|+++|+++.+.+.  |.          ....|.++.+|+|+|+...     
T Consensus       192 i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~--g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~-----  264 (604)
T 3k1j_A          192 VEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPIT--GQSEMSSGAMVRTEPVPCDFVLVAAGNLDTV-----  264 (604)
T ss_dssp             EECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCB--CSCTTSGGGGCBCSCEECCCEEEEEECHHHH-----
T ss_pred             ccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEec--ccccccccccCCCCccceeEEEEEecCHHHH-----
Confidence            578899999999999999999999999999999999998873  33          4567889999999997521     


Q ss_pred             cccccccCCChhhhccce---eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhh-----cCCcchHHHHHHHHHHHH
Q psy17703        470 KTIIDNIRLPHTLLSRFD---LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEH-----LSPTLSEEASQRLIQTYV  541 (720)
Q Consensus       470 ~~~~~~~~l~~aLlsRFd---li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~-----~~p~ls~ea~~~l~~~y~  541 (720)
                            ..++++|++||+   +.+.+.+....          ..+.+..|+.+..+.     ..+.+++++.+.|.++|.
T Consensus       265 ------~~l~~~l~~R~~v~~i~i~l~~~~~~----------~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~  328 (604)
T 3k1j_A          265 ------DKMHPALRSRIRGYGYEVYMRTTMPD----------TIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQ  328 (604)
T ss_dssp             ------HHSCHHHHHHHHHHSEEEECCSEEEC----------CHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHH
T ss_pred             ------hhcCHHHHHHhhccceEeeccccccC----------CHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHh
Confidence                  148999999997   45555432211          111233333333322     347899999999999986


Q ss_pred             HhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703        542 DMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL  590 (720)
Q Consensus       542 ~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l  590 (720)
                      .+.   ..+..++.++|++.+++|.|.++|+.++++.|+.+|+.+|+..
T Consensus       329 r~~---g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~  374 (604)
T 3k1j_A          329 KRA---GRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM  374 (604)
T ss_dssp             HTT---CSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred             hhh---ccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence            432   1233567789999999999999999999999999999999864

>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11

Probab=99.69  E-value=1.1e-17  Score=175.08  Aligned_cols=89  Identities=29%  Similarity=0.489  Sum_probs=51.7

Q ss_pred             CCCCCCceEEEEEEcccccccccCCCeEEEEEEEEeccCCCCccccccccceeEEEEEEEEEEecccccccccccCCCCC
Q psy17703          1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKIDATRLYKQDEKEHKFP   80 (720)
Q Consensus         1 VP~G~~Prsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   80 (720)
                      ||+|++|||++|++++||||+|+|||+|+|||||++.+       ++..++|++|++|+|+.+.+.      ...+..||
T Consensus       191 vp~G~~Prsi~V~l~~dLvd~~~PGDrV~vtGI~~~~~-------~~~~~~~~~~l~a~~I~~~~~------~~~~~~~t  257 (279)
T 1ltl_A          191 LSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVR-------DERTKRFKNFIYGNYTEFLEQ------EFEELQIS  257 (279)
T ss_dssp             CCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEEEEEEE-------ETTTTEEEEEEEEEECCBC----------------
T ss_pred             CCCCCCCeEEEEEEcccccCccCCCCEEEEEEEEEEee-------CCCCceEEEEEEEEEEEEecC------ccccCCCC
Confidence            79999999999999999999999999999999999876       123578999999999987532      22456799


Q ss_pred             hHHHHHHHhhhcCCcHHHHHHH
Q psy17703         81 PERVELLKSLSRKPDIYERLTS  102 (720)
Q Consensus        81 ~~~~~~i~~l~~~~~iy~~l~~  102 (720)
                      +|++++|++|+++||+|++|++
T Consensus       258 ~ed~~~i~~ls~~~~iy~~L~~  279 (279)
T 1ltl_A          258 EEDEEKIKELAGDPNIYEKIIR  279 (279)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHHhcCCCHHHHhhC
Confidence            9999999999999999999974

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.58  E-value=1.1e-14  Score=156.35  Aligned_cols=193  Identities=21%  Similarity=0.255  Sum_probs=132.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT  424 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~  424 (720)
                      ..|+||+||||||||++++++++.+....+.         ..+......  +.+  ....-..++++++||||++.|+++
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~---------~~~~~~~~~--~~~--~~~~~~~~~~~vl~lDEi~~l~~~  121 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMSANIKT---------TAAPMIEKS--GDL--AAILTNLSEGDILFIDEIHRLSPA  121 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTTCCEEE---------EEGGGCCSH--HHH--HHHHHTCCTTCEEEEETGGGCCHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeEE---------ecchhccch--hHH--HHHHHhccCCCEEEEechhhcCHH
Confidence            4689999999999999999999887543211         000000000  000  000011457899999999999999


Q ss_pred             HHHHHHHHHHhceEeeeccC------eEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChH
Q psy17703        425 TRSILHEVMEQQTLSIAKAG------IICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSE  498 (720)
Q Consensus       425 ~~~~L~e~mE~~~vsi~k~g------~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~  498 (720)
                      .+..|+.+|+++.+.+...+      ....+| ++.+|+|+|+..             .++++|++||+.++.+..++.+
T Consensus       122 ~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~~~-------------~l~~~L~~R~~~~i~l~~~~~~  187 (338)
T 3pfi_A          122 IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTRAG-------------MLSNPLRDRFGMQFRLEFYKDS  187 (338)
T ss_dssp             HHHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEESCGG-------------GSCHHHHTTCSEEEECCCCCHH
T ss_pred             HHHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCCCcc-------------ccCHHHHhhcCEEeeCCCcCHH
Confidence            99999999999876542111      112233 689999999643             4889999999999999988776


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCC
Q psy17703        499 QFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSET  578 (720)
Q Consensus       499 ~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~  578 (720)
                      +....+..             ........+++++.+.+...             ++.++|.+..+++.+...|.+.....
T Consensus       188 e~~~il~~-------------~~~~~~~~~~~~~~~~l~~~-------------~~G~~r~l~~~l~~~~~~a~~~~~~~  241 (338)
T 3pfi_A          188 ELALILQK-------------AALKLNKTCEEKAALEIAKR-------------SRSTPRIALRLLKRVRDFADVNDEEI  241 (338)
T ss_dssp             HHHHHHHH-------------HHHHTTCEECHHHHHHHHHT-------------TTTCHHHHHHHHHHHHHHHHHTTCSE
T ss_pred             HHHHHHHH-------------HHHhcCCCCCHHHHHHHHHH-------------HCcCHHHHHHHHHHHHHHHHhhcCCc
Confidence            55433321             11123456888888877641             24567999999998888888888889


Q ss_pred             CCHHhHHHHHHH
Q psy17703        579 VEVQDVDEAWRL  590 (720)
Q Consensus       579 V~~~Dv~~Ai~l  590 (720)
                      ++.+++..++..
T Consensus       242 i~~~~~~~~~~~  253 (338)
T 3pfi_A          242 ITEKRANEALNS  253 (338)
T ss_dssp             ECHHHHHHHHHH
T ss_pred             cCHHHHHHHHHH
Confidence            999999988753

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=99.57  E-value=6.6e-15  Score=155.42  Aligned_cols=226  Identities=18%  Similarity=0.216  Sum_probs=140.3

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccccceeecCccccc-eeeecceeeec-CCceeeccccccC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLTAYITKDPETRQ-MVLQTGALVLA-DSGVCCIDEFDKM  421 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glta~~~~~~~~~~-~~~~~G~l~la-d~gI~~IDEidkm  421 (720)
                      ..++||+||||||||++++++++.+....+ .+.......+...... ...... ....+|.+..+ .+++++|||++++
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l  128 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEV-DSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKI  128 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGST-THHHHHHHHTTTTCHHHHHHHCEEEEECGGGG
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccH-HHHHHHHHHHhhHHHhhccCCCEEEEEChhhc
Confidence            469999999999999999999998754322 1111111101110000 000000 01113343333 3789999999999


Q ss_pred             ChHH------------HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        422 SDTT------------RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       422 ~~~~------------~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      +.+.            ++.|+.+||...+.. +.+  ...+.++.+++++|+....         ...++++|++||+++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~-~~~--~~~~~~~~~i~~~~~~~~~---------~~~l~~~l~~R~~~~  196 (310)
T 1ofh_A          129 CKKGEYSGADVSREGVQRDLLPLVEGSTVST-KHG--MVKTDHILFIASGAFQVAR---------PSDLIPELQGRLPIR  196 (310)
T ss_dssp             SCCSSCCSSHHHHHHHHHHHHHHHHCCEEEE-TTE--EEECTTCEEEEEECCSSSC---------GGGSCHHHHHTCCEE
T ss_pred             CccccccccchhHHHHHHHHHHHhcCCeEec-ccc--cccCCcEEEEEcCCcccCC---------cccCCHHHHhhCCce
Confidence            8765            889999999887664 222  2334678899988753211         125889999999988


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE  568 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~  568 (720)
                      +.+.+++.++....+..+.. .++++|...++. .....+++++.+.|.++....+....     ...+|++..+++.+-
T Consensus       197 i~~~~~~~~~~~~il~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~-----~g~~R~l~~~l~~~~  270 (310)
T 1ofh_A          197 VELTALSAADFERILTEPHA-SLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTE-----NIGARRLHTVMERLM  270 (310)
T ss_dssp             EECCCCCHHHHHHHHHSSTT-CHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSC-----CCTTHHHHHHHHHHS
T ss_pred             EEcCCcCHHHHHHHHHhhHH-HHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccccc-----ccCcHHHHHHHHHHH
Confidence            99998887776666654332 344444444432 33457999999999988765432111     123599998887655


Q ss_pred             HHHHHcCC---C---CCCHHhHHHHHH
Q psy17703        569 AHAKMRYS---E---TVEVQDVDEAWR  589 (720)
Q Consensus       569 A~A~l~~~---~---~V~~~Dv~~Ai~  589 (720)
                      +.+.++..   .   .|+.+|+.+|+.
T Consensus       271 ~~~~~~~~~~~~~~~~i~~~~v~~~l~  297 (310)
T 1ofh_A          271 DKISFSASDMNGQTVNIDAAYVADALG  297 (310)
T ss_dssp             HHHHHHGGGCTTCEEEECHHHHHHHTC
T ss_pred             HhhhcCCccccCCEEEEeeHHHHHHHH
Confidence            44333221   1   489999988854

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=99.57  E-value=4.1e-15  Score=157.80  Aligned_cols=213  Identities=17%  Similarity=0.202  Sum_probs=138.3

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCcccccccc----ceeecCccccceeeecceeeecCCceeec
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLT----AYITKDPETRQMVLQTGALVLADSGVCCI  415 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glt----a~~~~~~~~~~~~~~~G~l~lad~gI~~I  415 (720)
                      .+.+|||+||||||||++++++++.+++.    ++........ .+.    .+..+...++......|.+..+++|++||
T Consensus        24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~-~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~L  102 (304)
T 1ojl_A           24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNE-SLLESELFGHEKGAFTGADKRREGRFVEADGGTLFL  102 (304)
T ss_dssp             TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCH-HHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEE
T ss_pred             CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCCh-HHHHHHhcCccccccCchhhhhcCHHHhcCCCEEEE
Confidence            57899999999999999999999987653    1111111000 000    00111122333334567778889999999


Q ss_pred             cccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE-EEecC
Q psy17703        416 DEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI-FLLLD  494 (720)
Q Consensus       416 DEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli-~~l~d  494 (720)
                      ||++.|+.+.|..|+.+|+++.+.  +.|.....+.++.+|+|+|+...      .....-.+.+.|++||..+ +.+++
T Consensus       103 DEi~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~riI~atn~~l~------~~v~~g~fr~~L~~Rl~~~~i~lPp  174 (304)
T 1ojl_A          103 DEIGDISPLMQVRLLRAIQEREVQ--RVGSNQTISVDVRLIAATHRDLA------EEVSAGRFRQDLYYRLNVVAIEMPS  174 (304)
T ss_dssp             ESCTTCCHHHHHHHHHHHHSSBCC--BTTBCCCCBCCCEEEEEESSCHH------HHHHHTSSCHHHHHHHSSEEEECCC
T ss_pred             eccccCCHHHHHHHHHHHhcCEee--ecCCcccccCCeEEEEecCccHH------HHHHhCCcHHHHHhhcCeeEEeccC
Confidence            999999999999999999998764  57777778889999999997521      1122235789999999733 44444


Q ss_pred             CChHHHHHHHHhhcchhHHHHHHHHHHhh---cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHH
Q psy17703        495 PQSEQFDARLARHLDITVLRDYIAYAQEH---LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHA  571 (720)
Q Consensus       495 ~~~~~~d~~la~~i~~~~l~~~i~~ar~~---~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A  571 (720)
                      ..+...|  +     ..+++.|+......   -.+.+++++.+.+..+            +|+.+.|+|+.+++-+...+
T Consensus       175 L~eR~ed--i-----~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~------------~wpGnvReL~~~l~~~~~~~  235 (304)
T 1ojl_A          175 LRQRRED--I-----PLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY------------DWPGNIRELENAIERAVVLL  235 (304)
T ss_dssp             SGGGGGG--H-----HHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHC
T ss_pred             HHHhHhh--H-----HHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC------------CCCCCHHHHHHHHHHHHHhC
Confidence            3321111  0     11233344333222   1357899999888754            36677899999988766554


Q ss_pred             HHcCCCCCCHHhHHHH
Q psy17703        572 KMRYSETVEVQDVDEA  587 (720)
Q Consensus       572 ~l~~~~~V~~~Dv~~A  587 (720)
                         ....++.+|+...
T Consensus       236 ---~~~~i~~~~l~~~  248 (304)
T 1ojl_A          236 ---TGEYISERELPLA  248 (304)
T ss_dssp             ---CSSSBCGGGSCGG
T ss_pred             ---CCCcccHHhhhhh
Confidence               2457888887544

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=99.55  E-value=1.1e-14  Score=150.97  Aligned_cols=211  Identities=18%  Similarity=0.189  Sum_probs=127.4

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCccccccccc---eeecCccccceeeecceeeecCCceeecc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLTA---YITKDPETRQMVLQTGALVLADSGVCCID  416 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glta---~~~~~~~~~~~~~~~G~l~lad~gI~~ID  416 (720)
                      .+.++||+||||||||++++++++.+++.    ++..........+..   +..+...++......|.+..+++|++|||
T Consensus        28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lD  107 (265)
T 2bjv_A           28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLD  107 (265)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHTTTSEEEEE
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhcCCcEEEEe
Confidence            46799999999999999999999987642    111111100000000   00011112222234566667889999999


Q ss_pred             ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce-eEEEecCC
Q psy17703        417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD-LIFLLLDP  495 (720)
Q Consensus       417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd-li~~l~d~  495 (720)
                      |++.++.+.|..|+.+|+++.+.  +.|.....+.++.+|+|+|+....      ....-.+.++|++||+ +.+.+++.
T Consensus       108 Ei~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~~iI~atn~~~~~------~~~~~~~~~~L~~Rl~~~~i~lp~L  179 (265)
T 2bjv_A          108 ELATAPMMVQEKLLRVIEYGELE--RVGGSQPLQVNVRLVCATNADLPA------MVNEGTFRADLLDALAFDVVQLPPL  179 (265)
T ss_dssp             SGGGSCHHHHHHHHHHHHHCEEC--CCCC--CEECCCEEEEEESSCHHH------HHHHTSSCHHHHHHHCSEEEECCCG
T ss_pred             chHhcCHHHHHHHHHHHHhCCee--cCCCcccccCCeEEEEecCcCHHH------HHHcCCccHHHHHhhcCcEEeCCCh
Confidence            99999999999999999998763  566666777889999999975311      1112257899999997 44555544


Q ss_pred             ChHHHHHHHHhhcchhHHHHHHHHHHhhc-C---CcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHH
Q psy17703        496 QSEQFDARLARHLDITVLRDYIAYAQEHL-S---PTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHA  571 (720)
Q Consensus       496 ~~~~~d~~la~~i~~~~l~~~i~~ar~~~-~---p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A  571 (720)
                      .+...|  +.     .+++.++....... .   +.+++++.+.|..+            .|+.+.|+|+.+++.+-..+
T Consensus       180 ~~R~~d--i~-----~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~------------~~~gn~reL~~~l~~~~~~~  240 (265)
T 2bjv_A          180 RERESD--IM-----LMAEYFAIQMCREIKLPLFPGFTERARETLLNY------------RWPGNIRELKNVVERSVYRH  240 (265)
T ss_dssp             GGCHHH--HH-----HHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHS------------CCTTHHHHHHHHHHHHHHHH
T ss_pred             hhhhHH--HH-----HHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhC------------CCCCCHHHHHHHHHHHHHhC
Confidence            332111  11     12223333222211 1   47899998888643            35556799999887765544


Q ss_pred             HHcCCCCCCHHhH
Q psy17703        572 KMRYSETVEVQDV  584 (720)
Q Consensus       572 ~l~~~~~V~~~Dv  584 (720)
                      .   ...++.+|+
T Consensus       241 ~---~~~i~~~~l  250 (265)
T 2bjv_A          241 G---TSDYPLDDI  250 (265)
T ss_dssp             C---CSSSCBCCC
T ss_pred             C---CCcCcHHHc
Confidence            2   345555544

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=99.53  E-value=1.2e-14  Score=158.71  Aligned_cols=233  Identities=16%  Similarity=0.169  Sum_probs=122.6

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      ...|+||+||||||||++++++++.+....+. ........+..+..........+....|.+..+.+|++||||++++.
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~  150 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKIS  150 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHh
Confidence            46799999999999999999999988533221 11111101111110000001111122344556678999999999999


Q ss_pred             hH--------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCC--------------C-------CCC
Q psy17703        423 DT--------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD--------------S-------QWN  467 (720)
Q Consensus       423 ~~--------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~--------------g-------~~~  467 (720)
                      .+              .++.|+.+||.+.+.+...|.....+.++.+++++|...              .       +|.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~  230 (376)
T 1um8_A          151 RLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFT  230 (376)
T ss_dssp             -------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCC
T ss_pred             hhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCC
Confidence            88              899999999998887777766665555554444444310              0       111


Q ss_pred             CC-c------ccc--------cccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHH-hhcCCcchHH
Q psy17703        468 TS-K------TII--------DNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQ-EHLSPTLSEE  531 (720)
Q Consensus       468 ~~-~------~~~--------~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar-~~~~p~ls~e  531 (720)
                      .. +      .+.        ....+.++|++||+.++.+.+...++....+.... ..++++|....+ ......++++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  309 (376)
T 1um8_A          231 QEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPK-NALIKQYQQLFKMDEVDLIFEEE  309 (376)
T ss_dssp             CSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSST-TCHHHHHHHHHHTTTCEEEECHH
T ss_pred             chhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhH-HHHHHHHHHHHhhcCceEEECHH
Confidence            10 0      000        03358899999999899998888776665554321 123333333222 2234578999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCC------CCCCHHhHHHH
Q psy17703        532 ASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYS------ETVEVQDVDEA  587 (720)
Q Consensus       532 a~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~------~~V~~~Dv~~A  587 (720)
                      +.+.|..+.....          ...|.|..++.-+-..+..+..      -.|+.+++..+
T Consensus       310 a~~~l~~~~~~~~----------~~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~  361 (376)
T 1um8_A          310 AIKEIAQLALERK----------TGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQ  361 (376)
T ss_dssp             HHHHHHHHHHHTT----------CTGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTS
T ss_pred             HHHHHHHHhcccc----------cCcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCC
Confidence            9999987743211          1237777766544333222211      14677666554

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.48  E-value=4.3e-13  Score=142.65  Aligned_cols=193  Identities=21%  Similarity=0.226  Sum_probs=132.3

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCc-cccCCccccccccceeecCccccceeeeccee--eecCCceeecccccc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ-YTSGKGSSAVGLTAYITKDPETRQMVLQTGAL--VLADSGVCCIDEFDK  420 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~-~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l--~lad~gI~~IDEidk  420 (720)
                      ...++||+||||||||++++++++.+.... +..+......            ++.   .+.+  .+++++++||||++.
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~------------~~l---~~~l~~~~~~~~~l~lDEi~~  101 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP------------GDL---AAILANSLEEGDILFIDEIHR  101 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH------------HHH---HHHHTTTCCTTCEEEETTTTS
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh------------HHH---HHHHHHhccCCCEEEEECCcc
Confidence            347899999999999999999998764322 1111111000            000   0011  135789999999999


Q ss_pred             CChHHHHHHHHHHHhceEeeecc-----CeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCC
Q psy17703        421 MSDTTRSILHEVMEQQTLSIAKA-----GIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDP  495 (720)
Q Consensus       421 m~~~~~~~L~e~mE~~~vsi~k~-----g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~  495 (720)
                      ++...+..|+.+|+++.+.+--.     ......+.++.+++|+|...             .++++|++||+.++.+..+
T Consensus       102 l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~-------------~~~~~l~~R~~~~i~l~~~  168 (324)
T 1hqc_A          102 LSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG-------------LITAPLLSRFGIVEHLEYY  168 (324)
T ss_dssp             CCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCS-------------SCSCSTTTTCSCEEECCCC
T ss_pred             cccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcc-------------cCCHHHHhcccEEEecCCC
Confidence            99999999999999987664211     11122234789999999653             4778899999888888888


Q ss_pred             ChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcC
Q psy17703        496 QSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRY  575 (720)
Q Consensus       496 ~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~  575 (720)
                      +.++....+.         .+    .......+++++.+.+..+.             +.++|.+..+++.+...|....
T Consensus       169 ~~~e~~~~l~---------~~----~~~~~~~~~~~~~~~l~~~~-------------~G~~r~l~~~l~~~~~~a~~~~  222 (324)
T 1hqc_A          169 TPEELAQGVM---------RD----ARLLGVRITEEAALEIGRRS-------------RGTMRVAKRLFRRVRDFAQVAG  222 (324)
T ss_dssp             CHHHHHHHHH---------HH----HHTTTCCCCHHHHHHHHHHS-------------CSCHHHHHHHHHHHTTTSTTTS
T ss_pred             CHHHHHHHHH---------HH----HHhcCCCCCHHHHHHHHHHc-------------cCCHHHHHHHHHHHHHHHHHhc
Confidence            7665432222         11    12234568888888877541             2357999999988887777777


Q ss_pred             CCCCCHHhHHHHHHH
Q psy17703        576 SETVEVQDVDEAWRL  590 (720)
Q Consensus       576 ~~~V~~~Dv~~Ai~l  590 (720)
                      ...++.+|+..++..
T Consensus       223 ~~~i~~~~~~~~~~~  237 (324)
T 1hqc_A          223 EEVITRERALEALAA  237 (324)
T ss_dssp             CSCCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHH
Confidence            888999999888653

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=99.46  E-value=2.1e-14  Score=156.07  Aligned_cols=213  Identities=15%  Similarity=0.195  Sum_probs=114.0

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCcccc-CCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTS-GKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~-g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      ...|+||+||||||||++++++++.+....+.. .......++.+..........+...++.+..+.+||+||||+|+++
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~  129 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKIS  129 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhc
Confidence            357999999999999999999999875332211 1000000010000000000111122344445678999999999998


Q ss_pred             hH--------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccC--------CC---------C-----CC
Q psy17703        423 DT--------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP--------CD---------S-----QW  466 (720)
Q Consensus       423 ~~--------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp--------~~---------g-----~~  466 (720)
                      .+              .++.|+++||...+.+...+....-..++.+++|+|.        ..         +     +|
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf  209 (363)
T 3hws_A          130 RKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGF  209 (363)
T ss_dssp             CCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC----
T ss_pred             ccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCc
Confidence            77              8999999999555545433433333334445555554        10         0     01


Q ss_pred             CCC----------ccccccc--------CCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHH-hhcCCc
Q psy17703        467 NTS----------KTIIDNI--------RLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQ-EHLSPT  527 (720)
Q Consensus       467 ~~~----------~~~~~~~--------~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar-~~~~p~  527 (720)
                      ...          ..+.+.+        .+.++|++|||.++.+.++..++....+..++ ..++++|..... ..+...
T Consensus       210 ~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~-~~l~~~~~~~~~~~~~~l~  288 (363)
T 3hws_A          210 GATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPK-NALTKQYQALFNLEGVDLE  288 (363)
T ss_dssp             --------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSST-TCHHHHHHHHHHTTTCEEE
T ss_pred             cccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHH-HHHHHHHHHHHHhcCceEE
Confidence            000          0011111        28999999999888888887766655444322 123444443333 234567


Q ss_pred             chHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHH
Q psy17703        528 LSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS  567 (720)
Q Consensus       528 ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla  567 (720)
                      +++++.+.|.++-..          ++...|.|+.++.-+
T Consensus       289 ~~~~a~~~L~~~~~~----------~~~gaR~L~~~ie~~  318 (363)
T 3hws_A          289 FRDEALDAIAKKAMA----------RKTGARGLRSIVEAA  318 (363)
T ss_dssp             ECHHHHHHHHHHHHH----------TTCTTTTHHHHHHHH
T ss_pred             ECHHHHHHHHHhhcC----------CccCchHHHHHHHHH
Confidence            899999999875222          122348888877643

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=99.43  E-value=7.2e-13  Score=140.10  Aligned_cols=205  Identities=17%  Similarity=0.114  Sum_probs=118.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCccccccccceeecC--ccccc--eeeecceeeecCCceeeccc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLTAYITKD--PETRQ--MVLQTGALVLADSGVCCIDE  417 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glta~~~~~--~~~~~--~~~~~G~l~lad~gI~~IDE  417 (720)
                      .++||+||||||||++++++++.+.+.    ++..................  ...+.  ...-.+++..+.+++++|||
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDE  127 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDA  127 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEET
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeC
Confidence            589999999999999999999977432    11111000000000000000  00000  00011233344578999999


Q ss_pred             cccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCC-------CCCCCCccccc------ccCCChhhhc
Q psy17703        418 FDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD-------SQWNTSKTIID------NIRLPHTLLS  484 (720)
Q Consensus       418 idkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~-------g~~~~~~~~~~------~~~l~~aLls  484 (720)
                      +++++++.++.|+++|+++.+... .+....+ .++.+|+|+|+..       +.......+.+      .-.++++|++
T Consensus       128 i~~l~~~~~~~Ll~~le~~~~~~~-~~~~~~~-~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~  205 (311)
T 4fcw_A          128 IEKAHPDVFNILLQMLDDGRLTDS-HGRTVDF-RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN  205 (311)
T ss_dssp             GGGSCHHHHHHHHHHHHHSEEECT-TSCEEEC-TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT
T ss_pred             hhhcCHHHHHHHHHHHhcCEEEcC-CCCEEEC-CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh
Confidence            999999999999999999988742 2333332 3566999999831       11111112222      2258999999


Q ss_pred             cceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHH-hhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHH
Q psy17703        485 RFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQ-EHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESL  563 (720)
Q Consensus       485 RFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar-~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~l  563 (720)
                      ||+.++.+.++..++....+..+     ++++..... ......+++++.+.|.++-..          .+.+.|+|..+
T Consensus       206 R~~~~~~~~p~~~~~~~~i~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~gn~R~L~~~  270 (311)
T 4fcw_A          206 RLDEIVVFRPLTKEQIRQIVEIQ-----MSYLRARLAEKRISLELTEAAKDFLAERGYD----------PVFGARPLRRV  270 (311)
T ss_dssp             TCSEEEECCCCCHHHHHHHHHHH-----THHHHHHHHTTTCEEEECHHHHHHHHHHSCB----------TTTBTTTHHHH
T ss_pred             cCCeEEEeCCCCHHHHHHHHHHH-----HHHHHHHHHhCCcEEEeCHHHHHHHHHhCCC----------ccCCchhHHHH
Confidence            99988888887765544433322     222211111 124567899999988864210          12345888887


Q ss_pred             HHHH
Q psy17703        564 IRLS  567 (720)
Q Consensus       564 irla  567 (720)
                      ++-+
T Consensus       271 i~~~  274 (311)
T 4fcw_A          271 IQRE  274 (311)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7643

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=99.41  E-value=4.3e-13  Score=147.04  Aligned_cols=214  Identities=18%  Similarity=0.240  Sum_probs=142.6

Q ss_pred             CCCccEEEEcCCCCHHHHHHHHHHhhCCCCc--cc--cCCcccc----ccccceeecCccccceeeecceeeecCCceee
Q psy17703        343 PAEINILLCGDPGTSKSQLLSYVYDLVPRSQ--YT--SGKGSSA----VGLTAYITKDPETRQMVLQTGALVLADSGVCC  414 (720)
Q Consensus       343 pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~--~~--~g~~ss~----~glta~~~~~~~~~~~~~~~G~l~lad~gI~~  414 (720)
                      +.+.+||+.|++||||+.++++++...++..  +.  .......    ..+ .+..+...+|.....+|.+..|++|++|
T Consensus       158 ~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~el-fg~~~g~~tga~~~~~g~~~~a~~gtlf  236 (387)
T 1ny5_A          158 CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAEL-FGYEKGAFTGAVSSKEGFFELADGGTLF  236 (387)
T ss_dssp             TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHH-HCBCTTSSTTCCSCBCCHHHHTTTSEEE
T ss_pred             CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHh-cCCCCCCCCCcccccCCceeeCCCcEEE
Confidence            3678999999999999999999999887531  11  1000000    000 0111223444445578999999999999


Q ss_pred             ccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE-EEec
Q psy17703        415 IDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI-FLLL  493 (720)
Q Consensus       415 IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli-~~l~  493 (720)
                      |||++.|+.+.|..|+++|+++.+.  +.|.....+.++.+|+|+|...      ......-.+.+.|+.|+..+ +.++
T Consensus       237 ldei~~l~~~~q~~Ll~~l~~~~~~--~~g~~~~~~~~~rii~at~~~l------~~~~~~g~fr~dl~~rl~~~~i~lP  308 (387)
T 1ny5_A          237 LDEIGELSLEAQAKLLRVIESGKFY--RLGGRKEIEVNVRILAATNRNI------KELVKEGKFREDLYYRLGVIEIEIP  308 (387)
T ss_dssp             EESGGGCCHHHHHHHHHHHHHSEEC--CBTCCSBEECCCEEEEEESSCH------HHHHHTTSSCHHHHHHHTTEEEECC
T ss_pred             EcChhhCCHHHHHHHHHHHhcCcEE--eCCCCceeeccEEEEEeCCCCH------HHHHHcCCccHHHHHhhcCCeecCC
Confidence            9999999999999999999999875  4677777888999999999642      12223345788999999743 4444


Q ss_pred             CCChHHHHHHHHhhcchhHHHHHHHH-HHhhc--CCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703        494 DPQSEQFDARLARHLDITVLRDYIAY-AQEHL--SPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH  570 (720)
Q Consensus       494 d~~~~~~d~~la~~i~~~~l~~~i~~-ar~~~--~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~  570 (720)
                      +..+...|  +.     .+...|+.. +++.-  .+.+++++.+.+..|            +||.+.|+|+.+++-+-..
T Consensus       309 pLreR~~D--i~-----~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~------------~wpGNvreL~~~i~~~~~~  369 (387)
T 1ny5_A          309 PLRERKED--II-----PLANHFLKKFSRKYAKEVEGFTKSAQELLLSY------------PWYGNVRELKNVIERAVLF  369 (387)
T ss_dssp             CGGGCHHH--HH-----HHHHHHHHHHHHHTTCCCCEECHHHHHHHHHS------------CCTTHHHHHHHHHHHHHHH
T ss_pred             cchhcccc--HH-----HHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC------------CCCcHHHHHHHHHHHHHHh
Confidence            33222111  11     122333332 22221  246899999888754            5788889999999876654


Q ss_pred             HHHcCCCCCCHHhHHHH
Q psy17703        571 AKMRYSETVEVQDVDEA  587 (720)
Q Consensus       571 A~l~~~~~V~~~Dv~~A  587 (720)
                      +   ....++.+|+...
T Consensus       370 ~---~~~~i~~~~l~~~  383 (387)
T 1ny5_A          370 S---EGKFIDRGELSCL  383 (387)
T ss_dssp             C---CSSEECHHHHHHH
T ss_pred             C---CCCcCcHHHCcHh
Confidence            4   2357888887543

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.40  E-value=2.5e-13  Score=155.31  Aligned_cols=211  Identities=21%  Similarity=0.196  Sum_probs=120.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCcc-ccccccceeecCccccceeeeccee----e--ecCCceeecc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGS-SAVGLTAYITKDPETRQMVLQTGAL----V--LADSGVCCID  416 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~s-s~~glta~~~~~~~~~~~~~~~G~l----~--lad~gI~~ID  416 (720)
                      .-++||+||||||||+|++++++.+.+... ....+. ....+... .+ ...+.   .+|.+    .  ...++++|||
T Consensus       108 g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~-~~-~~ig~---~~~~~~~~~~~a~~~~~vl~lD  182 (543)
T 3m6a_A          108 GPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGH-RR-TYVGA---MPGRIIQGMKKAGKLNPVFLLD  182 (543)
T ss_dssp             SCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------------------------CHHHHHHTTCSSSEEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhH-HH-HHhcc---CchHHHHHHHHhhccCCEEEEh
Confidence            458999999999999999999998854321 111110 00000000 00 00010   11111    1  1256799999


Q ss_pred             ccccCChHH----HHHHHHHHHhceE-eeeccCeEEeec-CceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703        417 EFDKMSDTT----RSILHEVMEQQTL-SIAKAGIICQLN-ARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF  490 (720)
Q Consensus       417 Eidkm~~~~----~~~L~e~mE~~~v-si~k~g~~~~l~-a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~  490 (720)
                      |+++++.+.    ++.|+++|+.... .+...+.....+ .++.+|+|+|+..             .++++|++||+ ++
T Consensus       183 Eid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~-------------~l~~aL~~R~~-vi  248 (543)
T 3m6a_A          183 EIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLA-------------TIPGPLRDRME-II  248 (543)
T ss_dssp             ESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT-------------TSCHHHHHHEE-EE
T ss_pred             hhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccc-------------cCCHHHHhhcc-ee
Confidence            999999874    4788898875432 222233333333 6789999999865             58999999997 56


Q ss_pred             EecCCChHHHHHHHHhhcchhHHHHHHHHHH-hhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703        491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQ-EHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA  569 (720)
Q Consensus       491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar-~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A  569 (720)
                      .+..++.++....+..|+    ++++..... ......+++++.+.+...|.           ++...|.|++.+.-+-.
T Consensus       249 ~~~~~~~~e~~~Il~~~l----~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~-----------~~~~vR~L~~~i~~~~~  313 (543)
T 3m6a_A          249 NIAGYTEIEKLEIVKDHL----LPKQIKEHGLKKSNLQLRDQAILDIIRYYT-----------REAGVRSLERQLAAICR  313 (543)
T ss_dssp             ECCCCCHHHHHHHHHHTH----HHHHHHHTTCCGGGCEECHHHHHHHHHHHC-----------CCSSSHHHHHHHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHH----HHHHHHHcCCCcccccCCHHHHHHHHHhCC-----------hhhchhHHHHHHHHHHH
Confidence            787777766655555543    222222111 01133678999999887663           12234777765543322


Q ss_pred             HHHHc------CCCCCCHHhHHHHHH
Q psy17703        570 HAKMR------YSETVEVQDVDEAWR  589 (720)
Q Consensus       570 ~A~l~------~~~~V~~~Dv~~Ai~  589 (720)
                      .|..+      ....|+.+|+.+++.
T Consensus       314 ~aa~~~~~~~~~~~~It~~~l~~~Lg  339 (543)
T 3m6a_A          314 KAAKAIVAEERKRITVTEKNLQDFIG  339 (543)
T ss_dssp             HHHHHHHTTCCSCCEECTTTTHHHHC
T ss_pred             HHHHHHHhcCCcceecCHHHHHHHhC
Confidence            23222      334689999999865

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.40  E-value=7.5e-13  Score=139.94  Aligned_cols=201  Identities=17%  Similarity=0.142  Sum_probs=121.9

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccce-eeecceeeecCCceeeccccccC-
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQM-VLQTGALVLADSGVCCIDEFDKM-  421 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~-~~~~G~l~lad~gI~~IDEidkm-  421 (720)
                      ...|+||+||||||||++++++++.+....+....  ..+............+.. ....+.+..+.+++++|||+|.+ 
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~  143 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKG--HLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLY  143 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSC--CEEEECGGGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCC--cEEEEcHHHhhhhcccccHHHHHHHHHhcCCCEEEEEChhhhc
Confidence            56799999999999999999999876321110000  000000000000000100 00122333456899999999977 


Q ss_pred             --------ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEec
Q psy17703        422 --------SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLL  493 (720)
Q Consensus       422 --------~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~  493 (720)
                              +...+..|+..|++.             +.++.+|+++|+..        ......++++|++||+.++.+.
T Consensus       144 ~~~~~~~~~~~~~~~Ll~~l~~~-------------~~~~~~i~~~~~~~--------~~~~~~~~~~l~~R~~~~i~~~  202 (309)
T 3syl_A          144 RPDNERDYGQEAIEILLQVMENN-------------RDDLVVILAGYADR--------MENFFQSNPGFRSRIAHHIEFP  202 (309)
T ss_dssp             CCC---CCTHHHHHHHHHHHHHC-------------TTTCEEEEEECHHH--------HHHHHHHSTTHHHHEEEEEEEC
T ss_pred             cCCCcccccHHHHHHHHHHHhcC-------------CCCEEEEEeCChHH--------HHHHHhhCHHHHHhCCeEEEcC
Confidence                    778889999999864             24678889988642        0111235699999999999999


Q ss_pred             CCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHH
Q psy17703        494 DPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKM  573 (720)
Q Consensus       494 d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l  573 (720)
                      ++..++....+..         ++.    .....+++++.+.+.++....+..     .++.+.|.+..+++.+...+..
T Consensus       203 ~~~~~~~~~il~~---------~l~----~~~~~~~~~~~~~l~~~~~~~~~~-----~~~gn~r~l~~~l~~a~~~~~~  264 (309)
T 3syl_A          203 DYSDEELFEIAGH---------MLD----DQNYQMTPEAETALRAYIGLRRNQ-----PHFANARSIRNALDRARLRQAN  264 (309)
T ss_dssp             CCCHHHHHHHHHH---------HHH----HTTCEECHHHHHHHHHHHHHHTTS-----SSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHH---------HHH----HcCCCCCHHHHHHHHHHHHHhccC-----CCCCcHHHHHHHHHHHHHHHHH
Confidence            8887665433332         211    135678999998888776555332     3445579999888866544433


Q ss_pred             c----CCCCCCHHhHH
Q psy17703        574 R----YSETVEVQDVD  585 (720)
Q Consensus       574 ~----~~~~V~~~Dv~  585 (720)
                      +    ....++.+|+.
T Consensus       265 r~~~~~~~~~~~~~l~  280 (309)
T 3syl_A          265 RLFTASSGPLDARALS  280 (309)
T ss_dssp             HHHHC---CEEHHHHH
T ss_pred             HHHhccCCCCCHHHHh
Confidence            3    23455555543

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=99.38  E-value=7.9e-12  Score=135.42  Aligned_cols=140  Identities=19%  Similarity=0.218  Sum_probs=97.1

Q ss_pred             CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      .+++||||++.|+.+.++.|+..+|+....+    ....-+....++++++..           ....++++|++||.. 
T Consensus       190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~----~ii~t~~~~~~i~~t~~~-----------~~~~l~~~l~sR~~~-  253 (368)
T 3uk6_A          190 PGVLFIDEVHMLDIESFSFLNRALESDMAPV----LIMATNRGITRIRGTSYQ-----------SPHGIPIDLLDRLLI-  253 (368)
T ss_dssp             BCEEEEESGGGSBHHHHHHHHHHTTCTTCCE----EEEEESCSEEECBTSSCE-----------EETTCCHHHHTTEEE-
T ss_pred             CceEEEhhccccChHHHHHHHHHhhCcCCCe----eeeecccceeeeeccCCC-----------CcccCCHHHHhhccE-
Confidence            3699999999999999999999998643221    011111223444444211           112589999999986 


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA  569 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A  569 (720)
                      +.+.+++.++....+..         +   ++ .....+++++.+.+..+...            .++|.+..+++.+..
T Consensus       254 i~~~~~~~~e~~~il~~---------~---~~-~~~~~~~~~~l~~l~~~~~~------------G~~r~~~~ll~~a~~  308 (368)
T 3uk6_A          254 VSTTPYSEKDTKQILRI---------R---CE-EEDVEMSEDAYTVLTRIGLE------------TSLRYAIQLITAASL  308 (368)
T ss_dssp             EEECCCCHHHHHHHHHH---------H---HH-HTTCCBCHHHHHHHHHHHHH------------SCHHHHHHHHHHHHH
T ss_pred             EEecCCCHHHHHHHHHH---------H---HH-HcCCCCCHHHHHHHHHHhcC------------CCHHHHHHHHHHHHH
Confidence            67777766654433332         1   11 23456899998888765321            356999999999999


Q ss_pred             HHHHcCCCCCCHHhHHHHHHH
Q psy17703        570 HAKMRYSETVEVQDVDEAWRL  590 (720)
Q Consensus       570 ~A~l~~~~~V~~~Dv~~Ai~l  590 (720)
                      .|..+.+..|+.+|+.+|+..
T Consensus       309 ~A~~~~~~~It~~~v~~a~~~  329 (368)
T 3uk6_A          309 VCRKRKGTEVQVDDIKRVYSL  329 (368)
T ss_dssp             HHHHTTCSSBCHHHHHHHHHH
T ss_pred             HHHHhCCCCCCHHHHHHHHHH
Confidence            999999999999999999875

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.37  E-value=7.1e-13  Score=138.56  Aligned_cols=197  Identities=19%  Similarity=0.197  Sum_probs=119.0

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCccccccccceeecCccccceeeecceeeecCCceeeccccccC-
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM-  421 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm-  421 (720)
                      ...++||+||||||||++++++++.+....+. .+.     .+....... ........-........++++|||+|.+ 
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~vl~iDEid~l~  123 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGS-----ELVKKFIGE-GASLVKDIFKLAKEKAPSIIFIDEIDAIA  123 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGG-----GGCCCSTTH-HHHHHHHHHHHHHHTCSEEEEEETTHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehH-----HHHHhccch-HHHHHHHHHHHHHHcCCeEEEEECHHHhc
Confidence            35689999999999999999999987543221 110     000000000 0000000000001123469999999997 


Q ss_pred             ----------ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeE
Q psy17703        422 ----------SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLI  489 (720)
Q Consensus       422 ----------~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli  489 (720)
                                ....+..+...++...-        ...+.++.+|+|+|+..             .+++++++  ||+.+
T Consensus       124 ~~~~~~~~~~~~~~~~~l~~ll~~~~~--------~~~~~~~~vI~ttn~~~-------------~l~~~l~~~~Rf~~~  182 (285)
T 3h4m_A          124 AKRTDALTGGDREVQRTLMQLLAEMDG--------FDARGDVKIIGATNRPD-------------ILDPAILRPGRFDRI  182 (285)
T ss_dssp             BCCSSSCCGGGGHHHHHHHHHHHHHHT--------TCSSSSEEEEEECSCGG-------------GBCHHHHSTTSEEEE
T ss_pred             ccCccccCCccHHHHHHHHHHHHHhhC--------CCCCCCEEEEEeCCCch-------------hcCHHHcCCCcCCeE
Confidence                      44556667666653210        01134688999999653             47899999  99999


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA  569 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A  569 (720)
                      +.+..|+.++....+..+            ++. ... -.+...+.+..    ..        ...++|.++.+++.|..
T Consensus       183 i~~~~p~~~~r~~il~~~------------~~~-~~~-~~~~~~~~l~~----~~--------~g~~~~~i~~l~~~a~~  236 (285)
T 3h4m_A          183 IEVPAPDEKGRLEILKIH------------TRK-MNL-AEDVNLEEIAK----MT--------EGCVGAELKAICTEAGM  236 (285)
T ss_dssp             EECCCCCHHHHHHHHHHH------------HTT-SCB-CTTCCHHHHHH----HC--------TTCCHHHHHHHHHHHHH
T ss_pred             EEECCCCHHHHHHHHHHH------------Hhc-CCC-CCcCCHHHHHH----Hc--------CCCCHHHHHHHHHHHHH
Confidence            999888777655443321            111 110 01111222221    11        12357999999999999


Q ss_pred             HHHHcCCCCCCHHhHHHHHHHHHH
Q psy17703        570 HAKMRYSETVEVQDVDEAWRLHRE  593 (720)
Q Consensus       570 ~A~l~~~~~V~~~Dv~~Ai~l~~~  593 (720)
                      .|..+.++.|+.+|+.+|+.-+..
T Consensus       237 ~a~~~~~~~I~~~d~~~al~~~~~  260 (285)
T 3h4m_A          237 NAIRELRDYVTMDDFRKAVEKIME  260 (285)
T ss_dssp             HHHHTTCSSBCHHHHHHHHHHHHH
T ss_pred             HHHHhccCcCCHHHHHHHHHHHHh
Confidence            999999999999999999875543

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.36  E-value=1.7e-12  Score=141.25  Aligned_cols=187  Identities=18%  Similarity=0.170  Sum_probs=114.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCC--ccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGK--GSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~--~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      -.+||+||||||||+||+++|+.+....+. ++.  .+..+|.+...++.-.     ..+-   .....|+||||+|.+.
T Consensus       183 rGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF-----~~Ar---~~aP~IIFiDEiDai~  254 (405)
T 4b4t_J          183 KGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELF-----VMAR---EHAPSIIFMDEIDSIG  254 (405)
T ss_dssp             CCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHH-----HHHH---HTCSEEEEEESSSCCT
T ss_pred             CceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHH-----HHHH---HhCCceEeeecchhhc
Confidence            479999999999999999999977543321 111  1111222211111100     0000   1125799999999874


Q ss_pred             hH-----------H---HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cc
Q psy17703        423 DT-----------T---RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RF  486 (720)
Q Consensus       423 ~~-----------~---~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RF  486 (720)
                      ..           .   ...|+..|+.-.           -..++.||||+|..+             .|++||++  ||
T Consensus       255 ~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~V~vIaATNrpd-------------~LDpAllRpGRf  310 (405)
T 4b4t_J          255 STRVEGSGGGDSEVQRTMLELLNQLDGFE-----------TSKNIKIIMATNRLD-------------ILDPALLRPGRI  310 (405)
T ss_dssp             TSCSCSSSGGGGHHHHHHHHHHHHHHTTT-----------CCCCEEEEEEESCSS-------------SSCHHHHSTTSS
T ss_pred             cCCCCCCCCCcHHHHHHHHHHHHhhhccC-----------CCCCeEEEeccCChh-------------hCCHhHcCCCcC
Confidence            21           1   233444444210           124578999999765             69999998  99


Q ss_pred             eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703        487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR  565 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir  565 (720)
                      |..+.+..|..+.+...+..|.            +. .+.+.+.   .+.++..          ..  ..|.+.+..+++
T Consensus       311 D~~I~i~lPd~~~R~~Il~~~~------------~~~~l~~dvd---l~~lA~~----------t~--G~SGADi~~l~~  363 (405)
T 4b4t_J          311 DRKIEFPPPSVAARAEILRIHS------------RKMNLTRGIN---LRKVAEK----------MN--GCSGADVKGVCT  363 (405)
T ss_dssp             CCEEECCCCCHHHHHHHHHHHH------------TTSBCCSSCC---HHHHHHH----------CC--SCCHHHHHHHHH
T ss_pred             ceEEEcCCcCHHHHHHHHHHHh------------cCCCCCccCC---HHHHHHH----------CC--CCCHHHHHHHHH
Confidence            9999998887766655544321            11 1111111   1222211          11  245699999999


Q ss_pred             HHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703        566 LSEAHAKMRYSETVEVQDVDEAWRLH  591 (720)
Q Consensus       566 la~A~A~l~~~~~V~~~Dv~~Ai~l~  591 (720)
                      -|.-.|.-+.+..|+.+|+..|++-+
T Consensus       364 eA~~~Air~~~~~vt~~Df~~Al~~v  389 (405)
T 4b4t_J          364 EAGMYALRERRIHVTQEDFELAVGKV  389 (405)
T ss_dssp             HHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence            88888877888999999999998643

>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}

Probab=99.36  E-value=8.9e-13  Score=137.16  Aligned_cols=63  Identities=33%  Similarity=0.518  Sum_probs=55.2

Q ss_pred             CCCCCCceEEEEEEcccccccccCCCeEEEEEEEEeccCCCCccccccccceeEEEEEEEEEEec
Q psy17703          1 MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVVHFRKID   65 (720)
Q Consensus         1 VP~G~~Prsi~v~~~~dLvd~~~PGD~V~vtGi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   65 (720)
                      ||+|++|||++|++++||||+|+|||+|+|||||++.+..+.  .++.+++|++|++|+||++.+
T Consensus       204 vp~G~~Prsi~v~l~~dLvd~~~PGDrV~vtGI~~~~~~~~~--~~~~~~~~~~yl~an~I~~~~  266 (268)
T 2vl6_A          204 VPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDIKQDSPV--KRGSRAVFDIYMKVSSIEVSQ  266 (268)
T ss_dssp             SCTTSCCCEEEEEEEGGGTTSSCTTCEEEEEEEEEEECSSTT--CCSSCCEEEEEEEEEEEEEC-
T ss_pred             CCCCCCCcEEEEEEccCccCcccCCCEEEEEEEEEEeecccc--cCCCceEEEEEEEEEEEEEec
Confidence            699999999999999999999999999999999999886532  234578999999999998743

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.36  E-value=6e-13  Score=158.37  Aligned_cols=195  Identities=14%  Similarity=0.138  Sum_probs=114.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHHH
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTR  426 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~  426 (720)
                      ++||+||||||||.+++++++.+.+.    +.  ..+.+..+...+........-.+++....++++||||+++++++.+
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~----~~--~~i~i~~s~~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~  596 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGD----EE--SMIRIDMSEYMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKAHPDVF  596 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSC----TT--CEEEEEGGGGCSSCCCC---CHHHHHHCSSSEEEEECGGGSCHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCC----Cc--ceEEEechhcccccccccchhhHHHHhCCCeEEEEeCccccCHHHH
Confidence            79999999999999999999987321    00  0011111000000000000001222334678999999999999999


Q ss_pred             HHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHHHh
Q psy17703        427 SILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLAR  506 (720)
Q Consensus       427 ~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~  506 (720)
                      +.|+++|+++.++.  .+.....+.++.+|+|+|.....++....... -.++++|++|||.++.+.++..++....+..
T Consensus       597 ~~Ll~~le~g~~~~--~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~-~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~  673 (758)
T 3pxi_A          597 NILLQVLEDGRLTD--SKGRTVDFRNTILIMTSNVGASEKDKVMGELK-RAFRPEFINRIDEIIVFHSLEKKHLTEIVSL  673 (758)
T ss_dssp             HHHHHHHHHSBCC-------CCBCTTCEEEEEESSSTTCCHHHHHHHH-HHSCHHHHTTSSEEEECC--CHHHHHHHHHH
T ss_pred             HHHHHHhccCeEEc--CCCCEeccCCeEEEEeCCCChhhHHHHHHHHH-hhCCHHHHhhCCeEEecCCCCHHHHHHHHHH
Confidence            99999999998776  33344456789999999965432111100011 1388999999998888888877665544443


Q ss_pred             hcchhHHHHHHHHHH-hhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703        507 HLDITVLRDYIAYAQ-EHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR  565 (720)
Q Consensus       507 ~i~~~~l~~~i~~ar-~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir  565 (720)
                      +     +.++..... ......+++++.+.|.+.-.          +++...|.|+.+++
T Consensus       674 ~-----l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~----------~~~~~~R~L~~~i~  718 (758)
T 3pxi_A          674 M-----SDQLTKRLKEQDLSIELTDAAKAKVAEEGV----------DLEYGARPLRRAIQ  718 (758)
T ss_dssp             H-----HHHHHHHHHTTTCEEEECHHHHHHHHGGGC----------CTTTTTTTHHHHHH
T ss_pred             H-----HHHHHHHHHhCCCeEEECHHHHHHHHHhCC----------CCCCCChHHHHHHH
Confidence            2     222211111 23456789999988864311          23444577777665

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=99.35  E-value=1.5e-12  Score=141.70  Aligned_cols=200  Identities=19%  Similarity=0.238  Sum_probs=133.7

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCc-cc--cCCcccc---ccccceeecCccccceeeecceeeecCCceeeccc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQ-YT--SGKGSSA---VGLTAYITKDPETRQMVLQTGALVLADSGVCCIDE  417 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~-~~--~g~~ss~---~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDE  417 (720)
                      .+.++|+.|++||||+.++++++...++.. +.  .......   .....+..+...++....++|.+..|++|++||||
T Consensus       151 ~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlflde  230 (368)
T 3dzd_A          151 SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDE  230 (368)
T ss_dssp             SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEET
T ss_pred             cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCCCeEEecC
Confidence            678999999999999999999999886631 11  0000000   00001122233445455578888999999999999


Q ss_pred             cccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE-EEecCCC
Q psy17703        418 FDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI-FLLLDPQ  496 (720)
Q Consensus       418 idkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli-~~l~d~~  496 (720)
                      ++.|+.+.|..|+++|+++.+.  +.|.....+.++.+|+|+|...      ......-.+.+.|+.|+..+ +.+++..
T Consensus       231 i~~l~~~~Q~~Ll~~l~~~~~~--~~g~~~~~~~~~rii~at~~~l------~~~v~~g~fr~dL~~rl~~~~i~lPpLr  302 (368)
T 3dzd_A          231 VGELDQRVQAKLLRVLETGSFT--RLGGNQKIEVDIRVISATNKNL------EEEIKKGNFREDLYYRLSVFQIYLPPLR  302 (368)
T ss_dssp             GGGSCHHHHHHHHHHHHHSEEC--CBTCCCBEECCCEEEEEESSCH------HHHHHTTSSCHHHHHHHTSEEEECCCGG
T ss_pred             hhhCCHHHHHHHHHHHHhCCcc--cCCCCcceeeeeEEEEecCCCH------HHHHHcCCccHHHHHHhCCeEEeCCChh
Confidence            9999999999999999999875  4677777888999999999542      12233346888999999843 4444433


Q ss_pred             hHHHHHHHHhhcchhHHHHHHHHH-Hhh--cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703        497 SEQFDARLARHLDITVLRDYIAYA-QEH--LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH  570 (720)
Q Consensus       497 ~~~~d~~la~~i~~~~l~~~i~~a-r~~--~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~  570 (720)
                      +...|  +     ..++..|+... ++.  -.+.+++++.+.|..|            +||.+.|+|+.+++.+-..
T Consensus       303 eR~~D--i-----~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~------------~wpGNvreL~n~i~~~~~~  360 (368)
T 3dzd_A          303 ERGKD--V-----ILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQ------------EWKGNVRELKNLIERAVIL  360 (368)
T ss_dssp             GSTTH--H-----HHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTC------------CCTTHHHHHHHHHHHHHHT
T ss_pred             hchhh--H-----HHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC------------CCCcHHHHHHHHHHHHHHh
Confidence            31111  0     11223333332 221  2356999999888743            5788889999988866443

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=99.33  E-value=1.3e-12  Score=145.52  Aligned_cols=187  Identities=16%  Similarity=0.203  Sum_probs=112.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHH
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTT  425 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~  425 (720)
                      .++||+||||||||++++.+++.+....+.-.    ..+......+.......    .....+.++++||||++.++.+.
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~----a~~~~~~~ir~~~~~a~----~~~~~~~~~iLfIDEI~~l~~~~  122 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVERIS----AVTSGVKEIREAIERAR----QNRNAGRRTILFVDEVHRFNKSQ  122 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE----TTTCCHHHHHHHHHHHH----HHHHTTCCEEEEEETTTCC----
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE----eccCCHHHHHHHHHHHH----HhhhcCCCcEEEEeChhhhCHHH
Confidence            48999999999999999999998754322110    00000000000000000    00012457899999999999999


Q ss_pred             HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHHH
Q psy17703        426 RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLA  505 (720)
Q Consensus       426 ~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la  505 (720)
                      ++.|+..||++.               +.+|+|++...           ...++++|++||. ++.+.+++.++....+.
T Consensus       123 q~~LL~~le~~~---------------v~lI~att~n~-----------~~~l~~aL~sR~~-v~~l~~l~~edi~~il~  175 (447)
T 3pvs_A          123 QDAFLPHIEDGT---------------ITFIGATTENP-----------SFELNSALLSRAR-VYLLKSLSTEDIEQVLT  175 (447)
T ss_dssp             --CCHHHHHTTS---------------CEEEEEESSCG-----------GGSSCHHHHTTEE-EEECCCCCHHHHHHHHH
T ss_pred             HHHHHHHHhcCc---------------eEEEecCCCCc-----------ccccCHHHhCcee-EEeeCCcCHHHHHHHHH
Confidence            999999999754               34566553221           1258899999997 66677777665443333


Q ss_pred             hhcchhHHHHHHHHHHhh---cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHc--CCCCCC
Q psy17703        506 RHLDITVLRDYIAYAQEH---LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMR--YSETVE  580 (720)
Q Consensus       506 ~~i~~~~l~~~i~~ar~~---~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~--~~~~V~  580 (720)
                      ..         +......   ....+++++.+.+..+.             +.+.|.+..+++.+...|...  ....|+
T Consensus       176 ~~---------l~~~~~~~~~~~~~i~~~al~~L~~~~-------------~Gd~R~lln~Le~a~~~a~~~~~~~~~It  233 (447)
T 3pvs_A          176 QA---------MEDKTRGYGGQDIVLPDETRRAIAELV-------------NGDARRALNTLEMMADMAEVDDSGKRVLK  233 (447)
T ss_dssp             HH---------HHCTTTSSTTSSEECCHHHHHHHHHHH-------------CSCHHHHHHHHHHHHHHSCBCTTSCEECC
T ss_pred             HH---------HHHHhhhhccccCcCCHHHHHHHHHHC-------------CCCHHHHHHHHHHHHHhcccccCCCCccC
Confidence            21         1110000   23468999998888652             234699999988877766533  445799


Q ss_pred             HHhHHHHHH
Q psy17703        581 VQDVDEAWR  589 (720)
Q Consensus       581 ~~Dv~~Ai~  589 (720)
                      .+|+.+++.
T Consensus       234 ~e~v~~~l~  242 (447)
T 3pvs_A          234 PELLTEIAG  242 (447)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999998864

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.33  E-value=2.6e-12  Score=152.95  Aligned_cols=185  Identities=16%  Similarity=0.157  Sum_probs=114.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccc----cccccceeecCccccc--eeeecceeeecCCceeeccccc
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSS----AVGLTAYITKDPETRQ--MVLQTGALVLADSGVCCIDEFD  419 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss----~~glta~~~~~~~~~~--~~~~~G~l~lad~gI~~IDEid  419 (720)
                      |+||+||||||||++++++++.+....+ .+.....    ...+.+..  ..+.|.  ...-.+++..++++|+||||++
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~--~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~  567 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP--PGYVGFDQGGLLTDAVIKHPHAVLLLDEIE  567 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCC--SCSHHHHHTTHHHHHHHHCSSEEEEEETGG
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCC--CCCcCccccchHHHHHHhCCCcEEEEeCcc
Confidence            7999999999999999999998753221 1111100    00110000  000000  0001234445678999999999


Q ss_pred             cCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCC-------CCCC---ccccccc--CCChhhhccce
Q psy17703        420 KMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQ-------WNTS---KTIIDNI--RLPHTLLSRFD  487 (720)
Q Consensus       420 km~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~-------~~~~---~~~~~~~--~l~~aLlsRFd  487 (720)
                      +++++.++.|+++||++.++.. .|....+ .++.+|+|+|+....       |...   ..+.+.+  .++++|++|||
T Consensus       568 ~~~~~~~~~Ll~~le~~~~~~~-~g~~~~~-~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~  645 (758)
T 1r6b_X          568 KAHPDVFNILLQVMDNGTLTDN-NGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLD  645 (758)
T ss_dssp             GSCHHHHHHHHHHHHHSEEEET-TTEEEEC-TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCS
T ss_pred             ccCHHHHHHHHHHhcCcEEEcC-CCCEEec-CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCC
Confidence            9999999999999999998873 3555554 679999999984321       1110   0111111  68999999999


Q ss_pred             eEEEecCCChHHHHHHHHhhcchhHHHHHHH-HHHhhcCCcchHHHHHHHHHHH
Q psy17703        488 LIFLLLDPQSEQFDARLARHLDITVLRDYIA-YAQEHLSPTLSEEASQRLIQTY  540 (720)
Q Consensus       488 li~~l~d~~~~~~d~~la~~i~~~~l~~~i~-~ar~~~~p~ls~ea~~~l~~~y  540 (720)
                      .++.+.++..++....+..++     .++-. +....+...+++++.+.|.++.
T Consensus       646 ~~i~~~~l~~~~~~~i~~~~l-----~~~~~~~~~~~~~~~~~~~a~~~l~~~~  694 (758)
T 1r6b_X          646 NIIWFDHLSTDVIHQVVDKFI-----VELQVQLDQKGVSLEVSQEARNWLAEKG  694 (758)
T ss_dssp             EEEECCCCCHHHHHHHHHHHH-----HHHHHHHHHTTEEEEECHHHHHHHHHHH
T ss_pred             cceeeCCCCHHHHHHHHHHHH-----HHHHHHHHHCCcEEEeCHHHHHHHHHhC
Confidence            888888887765554444322     21111 1122345678999999988654

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.32  E-value=4.1e-12  Score=138.62  Aligned_cols=189  Identities=17%  Similarity=0.210  Sum_probs=114.7

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCC--ccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGK--GSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~--~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      .-.|||+||||||||+||+++|..+....+. ++.  .+..+|.+...++.-.     ..+.   .....|+||||+|.+
T Consensus       216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF-----~~Ar---~~aP~IIfiDEiDai  287 (437)
T 4b4t_I          216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIF-----KVAG---ENAPSIVFIDEIDAI  287 (437)
T ss_dssp             CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHH-----HHHH---HTCSEEEEEEEESSS
T ss_pred             CCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHH-----HHHH---hcCCcEEEEehhhhh
Confidence            3579999999999999999999977543331 111  1111121111111100     0000   112579999999987


Q ss_pred             Ch-----------HHHH---HHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--c
Q psy17703        422 SD-----------TTRS---ILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--R  485 (720)
Q Consensus       422 ~~-----------~~~~---~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--R  485 (720)
                      ..           ....   .|+..|+..           .-..++.||||+|..+             .|++||++  |
T Consensus       288 ~~~R~~~~~~~~~~~~~~l~~LL~~lDg~-----------~~~~~ViVIaATNrpd-------------~LDpALlRpGR  343 (437)
T 4b4t_I          288 GTKRYDSNSGGEREIQRTMLELLNQLDGF-----------DDRGDVKVIMATNKIE-------------TLDPALIRPGR  343 (437)
T ss_dssp             SCCCSCSSCSSCCHHHHHHHHHHHHHHHC-----------CCSSSEEEEEEESCST-------------TCCTTSSCTTT
T ss_pred             cccCCCCCCCccHHHHHHHHHHHHHhhCc-----------CCCCCEEEEEeCCChh-------------hcCHHHhcCCc
Confidence            32           1222   344444321           1134578999999765             69999998  9


Q ss_pred             ceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHH
Q psy17703        486 FDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLI  564 (720)
Q Consensus       486 Fdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~li  564 (720)
                      ||..+.+..|..+.+...+..|.            +. .+.+.+.   .+.|+.    .      ..  ..|.+.++.++
T Consensus       344 fD~~I~v~lPd~~~R~~Il~~~l------------~~~~l~~dvd---l~~LA~----~------T~--GfSGADI~~l~  396 (437)
T 4b4t_I          344 IDRKILFENPDLSTKKKILGIHT------------SKMNLSEDVN---LETLVT----T------KD--DLSGADIQAMC  396 (437)
T ss_dssp             EEEEECCCCCCHHHHHHHHHHHH------------TTSCBCSCCC---HHHHHH----H------CC--SCCHHHHHHHH
T ss_pred             eeEEEEcCCcCHHHHHHHHHHHh------------cCCCCCCcCC---HHHHHH----h------CC--CCCHHHHHHHH
Confidence            99999888887666555444322            11 1111111   122221    1      11  24569999999


Q ss_pred             HHHHHHHHHcCCCCCCHHhHHHHHHHHH
Q psy17703        565 RLSEAHAKMRYSETVEVQDVDEAWRLHR  592 (720)
Q Consensus       565 rla~A~A~l~~~~~V~~~Dv~~Ai~l~~  592 (720)
                      +-|.-.|..+.+..|+.+|+..|++-..
T Consensus       397 ~eA~~~Air~~~~~It~eDf~~Al~rv~  424 (437)
T 4b4t_I          397 TEAGLLALRERRMQVTAEDFKQAKERVM  424 (437)
T ss_dssp             HHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCccCHHHHHHHHHHHh
Confidence            9988888888889999999999987443

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.30  E-value=3.3e-11  Score=129.38  Aligned_cols=192  Identities=19%  Similarity=0.244  Sum_probs=124.9

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCc-cccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQ-YTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT  424 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~-~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~  424 (720)
                      -|++|+||||+|||+|++.+++.+.... +++|......+         ..... ..    .+....|++|||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~---------~l~~~-~~----~~~~~~v~~iDE~~~l~~~  117 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG---------DMAAI-LT----SLERGDVLFIDEIHRLNKA  117 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHH---------HHHHH-HH----HCCTTCEEEEETGGGCCHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHH---------HHHHH-HH----HccCCCEEEEcchhhcCHH
Confidence            4799999999999999999999774321 12221110000         00000 00    0224679999999999998


Q ss_pred             HHHHHHHHHHhceEeee--cc---CeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHH
Q psy17703        425 TRSILHEVMEQQTLSIA--KA---GIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQ  499 (720)
Q Consensus       425 ~~~~L~e~mE~~~vsi~--k~---g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~  499 (720)
                      .++.|+..|+...+.+.  +.   ........++.+++++|+..             .|++++++||.+.+.+.++..++
T Consensus       118 ~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~-------------~Ls~~l~sR~~l~~~Ld~~~~~~  184 (334)
T 1in4_A          118 VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSG-------------LLSSPLRSRFGIILELDFYTVKE  184 (334)
T ss_dssp             HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGG-------------GSCHHHHTTCSEEEECCCCCHHH
T ss_pred             HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcc-------------cCCHHHHHhcCceeeCCCCCHHH
Confidence            88999999987643210  00   01111223577777777542             58999999999887887776655


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCC
Q psy17703        500 FDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETV  579 (720)
Q Consensus       500 ~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V  579 (720)
                      ....+.+             ..+...-.+++++.+.|.+.             ...++|.+..+++.+...|.++.+..|
T Consensus       185 l~~iL~~-------------~~~~~~~~~~~~~~~~ia~~-------------~~G~~R~a~~ll~~~~~~a~~~~~~~I  238 (334)
T 1in4_A          185 LKEIIKR-------------AASLMDVEIEDAAAEMIAKR-------------SRGTPRIAIRLTKRVRDMLTVVKADRI  238 (334)
T ss_dssp             HHHHHHH-------------HHHHTTCCBCHHHHHHHHHT-------------STTCHHHHHHHHHHHHHHHHHHTCSSB
T ss_pred             HHHHHHH-------------HHHHcCCCcCHHHHHHHHHh-------------cCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence            4333321             22223456788887777532             124679999999999999999888899


Q ss_pred             CHHhHHHHHHH
Q psy17703        580 EVQDVDEAWRL  590 (720)
Q Consensus       580 ~~~Dv~~Ai~l  590 (720)
                      +.+++.+|+..
T Consensus       239 t~~~v~~al~~  249 (334)
T 1in4_A          239 NTDIVLKTMEV  249 (334)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999999774

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.29  E-value=3.9e-12  Score=140.18  Aligned_cols=187  Identities=20%  Similarity=0.165  Sum_probs=112.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCC--ccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGK--GSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~--~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      .-.|||+||||||||++++++|..+....+. ++.  .+..+|.+...++.-.     ..+-   .....|+||||+|.+
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF-----~~A~---~~aP~IifiDEiDal  286 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAF-----ALAK---EKAPTIIFIDELDAI  286 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHH-----HHHH---HHCSEEEEEECTHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHH-----HHHH---hcCCeEEeecchhhh
Confidence            3589999999999999999999977543321 111  1111121111111000     0000   113579999999875


Q ss_pred             Ch-----------HHH---HHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--c
Q psy17703        422 SD-----------TTR---SILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--R  485 (720)
Q Consensus       422 ~~-----------~~~---~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--R  485 (720)
                      ..           ...   ..|+..|+.-         .  -..++.||||+|..+             .|++||++  |
T Consensus       287 ~~~R~~~~~~~~~~~~~~~~~lL~~ldg~---------~--~~~~ViVIaaTNrp~-------------~LD~AllRpGR  342 (434)
T 4b4t_M          287 GTKRFDSEKSGDREVQRTMLELLNQLDGF---------S--SDDRVKVLAATNRVD-------------VLDPALLRSGR  342 (434)
T ss_dssp             HCCCSSGGGGTTHHHHHHHHHHHHHHTTS---------C--SSCSSEEEEECSSCC-------------CCCTTTCSTTS
T ss_pred             hhccCCCCCCCchHHHHHHHHHHHHhhcc---------C--CCCCEEEEEeCCCch-------------hcCHhHhcCCc
Confidence            21           112   2344444321         0  124578999999765             69999999  9


Q ss_pred             ceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703        486 FDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR  565 (720)
Q Consensus       486 Fdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir  565 (720)
                      ||..+.+..|..+.+...+..|.         .  +..+.+.+.   .+.|+.     +     .  -..|.+.+..+++
T Consensus       343 fD~~I~i~lPd~~~R~~Il~~~~---------~--~~~~~~dvd---l~~lA~-----~-----t--~G~sGADi~~l~~  396 (434)
T 4b4t_M          343 LDRKIEFPLPSEDSRAQILQIHS---------R--KMTTDDDIN---WQELAR-----S-----T--DEFNGAQLKAVTV  396 (434)
T ss_dssp             EEEEEECCCCCHHHHHHHHHHHH---------H--HSCBCSCCC---HHHHHH-----H-----C--SSCCHHHHHHHHH
T ss_pred             eeEEEEeCCcCHHHHHHHHHHHh---------c--CCCCCCcCC---HHHHHH-----h-----C--CCCCHHHHHHHHH
Confidence            99999998887666554443221         1  111222221   122221     0     0  1245699999999


Q ss_pred             HHHHHHHHcCCCCCCHHhHHHHHH
Q psy17703        566 LSEAHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       566 la~A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      -|.-.|.-+.+..|+.+|+.+|+.
T Consensus       397 eA~~~a~r~~~~~i~~~Df~~Al~  420 (434)
T 4b4t_M          397 EAGMIALRNGQSSVKHEDFVEGIS  420 (434)
T ss_dssp             HHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCcCHHHHHHHHH
Confidence            888888778889999999999975

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.28  E-value=1.4e-11  Score=135.93  Aligned_cols=187  Identities=17%  Similarity=0.121  Sum_probs=113.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCC--ccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGK--GSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~--~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      -.|||+||||||||+|++++|..+....+. ++.  .+...|.+...++.-.     ..+   ......|+||||+|.+.
T Consensus       216 rGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F-----~~A---~~~~P~IifiDEiDai~  287 (437)
T 4b4t_L          216 KGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMF-----AYA---KEHEPCIIFMDEVDAIG  287 (437)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHH-----HHH---HHSCSEEEEEECCCSSS
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHH-----HHH---HhcCCceeeeecccccc
Confidence            579999999999999999999977543331 111  1111111111111000     000   01135799999999863


Q ss_pred             hH-----------H---HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcc--c
Q psy17703        423 DT-----------T---RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSR--F  486 (720)
Q Consensus       423 ~~-----------~---~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsR--F  486 (720)
                      ..           .   ...|+..|+...           -..++.||||||..+             .|++||++|  |
T Consensus       288 ~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~vivI~ATNrp~-------------~LDpAllRpGRf  343 (437)
T 4b4t_L          288 GRRFSEGTSADREIQRTLMELLTQMDGFD-----------NLGQTKIIMATNRPD-------------TLDPALLRPGRL  343 (437)
T ss_dssp             CCCSSSCCSSTTHHHHHHHHHHHHHHSSS-----------CTTSSEEEEEESSTT-------------SSCTTTTSTTSE
T ss_pred             cccccCCCCcchHHHHHHHHHHHHhhccc-----------CCCCeEEEEecCCch-------------hhCHHHhCCCcc
Confidence            21           1   234555554211           124578999999765             589999984  9


Q ss_pred             eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703        487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR  565 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir  565 (720)
                      |..+.+..|..+.+...+..|.            +. ...+.+.   .+.++.          ...  ..|.+.+..+++
T Consensus       344 D~~I~i~lPd~~~R~~Il~~~~------------~~~~~~~d~d---l~~lA~----------~t~--G~sGADi~~l~~  396 (437)
T 4b4t_L          344 DRKVEIPLPNEAGRLEIFKIHT------------AKVKKTGEFD---FEAAVK----------MSD--GFNGADIRNCAT  396 (437)
T ss_dssp             EEEECCCCCCHHHHHHHHHHHH------------HTSCBCSCCC---HHHHHH----------TCC--SCCHHHHHHHHH
T ss_pred             ceeeecCCcCHHHHHHHHHHHh------------cCCCCCcccC---HHHHHH----------hCC--CCCHHHHHHHHH
Confidence            9999998887666554443221            11 1112111   122211          111  245699999999


Q ss_pred             HHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703        566 LSEAHAKMRYSETVEVQDVDEAWRLH  591 (720)
Q Consensus       566 la~A~A~l~~~~~V~~~Dv~~Ai~l~  591 (720)
                      -|.-.|..+.+..|+.+|+..|++-+
T Consensus       397 eA~~~air~~~~~i~~~d~~~Al~~v  422 (437)
T 4b4t_L          397 EAGFFAIRDDRDHINPDDLMKAVRKV  422 (437)
T ss_dssp             HHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            88888888888999999999998643

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.28  E-value=2.2e-11  Score=133.54  Aligned_cols=188  Identities=16%  Similarity=0.157  Sum_probs=110.5

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCccccccccceeecCcccccee-eeccee---eecCCceeeccccc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGSSAVGLTAYITKDPETRQMV-LQTGAL---VLADSGVCCIDEFD  419 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~ss~~glta~~~~~~~~~~~~-~~~G~l---~lad~gI~~IDEid  419 (720)
                      ..++||+||||||||++++++++.+...++. ++..     +...     ..+... .....+   .....+|+||||+|
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~-----l~~~-----~~g~~~~~~~~~~~~a~~~~~~il~iDEid  217 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS-----LTSK-----YVGEGEKLVRALFAVARELQPSIIFIDQVD  217 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC-----C------------CHHHHHHHHHHHHHSSSEEEEEETGG
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH-----hhcc-----ccchHHHHHHHHHHHHHhcCCeEEEEECch
Confidence            4699999999999999999999987543221 1111     0000     000000 000000   01235799999999


Q ss_pred             cCC-----------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703        420 KMS-----------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL  488 (720)
Q Consensus       420 km~-----------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl  488 (720)
                      .+.           ...+..|+..|+..         ....+.++.||||+|+..             .+++++++||+.
T Consensus       218 ~l~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~v~vI~atn~~~-------------~l~~~l~~R~~~  275 (389)
T 3vfd_A          218 SLLCERREGEHDASRRLKTEFLIEFDGV---------QSAGDDRVLVMGATNRPQ-------------ELDEAVLRRFIK  275 (389)
T ss_dssp             GGC--------CTHHHHHHHHHHHHHHH---------C-----CEEEEEEESCGG-------------GCCHHHHTTCCE
T ss_pred             hhcccCCCccchHHHHHHHHHHHHhhcc---------cccCCCCEEEEEecCCch-------------hcCHHHHcCcce
Confidence            883           33455666666532         222346789999999754             588999999998


Q ss_pred             EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE  568 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~  568 (720)
                      .+.+..|+.++....+..            ++. .....++++..+.+....            -..+.+.+..|++-+.
T Consensus       276 ~i~i~~p~~~~r~~il~~------------~~~-~~~~~l~~~~~~~la~~~------------~g~~~~~l~~L~~~a~  330 (389)
T 3vfd_A          276 RVYVSLPNEETRLLLLKN------------LLC-KQGSPLTQKELAQLARMT------------DGYSGSDLTALAKDAA  330 (389)
T ss_dssp             EEECCCCCHHHHHHHHHH------------HHT-TSCCCSCHHHHHHHHHHT------------TTCCHHHHHHHHHHHT
T ss_pred             EEEcCCcCHHHHHHHHHH------------HHH-hcCCCCCHHHHHHHHHHc------------CCCCHHHHHHHHHHHH
Confidence            888877776654433321            111 123456666666555321            0134578888888776


Q ss_pred             HHHHHcC------------CCCCCHHhHHHHHH
Q psy17703        569 AHAKMRY------------SETVEVQDVDEAWR  589 (720)
Q Consensus       569 A~A~l~~------------~~~V~~~Dv~~Ai~  589 (720)
                      ..|.-++            ...|+.+|+..|+.
T Consensus       331 ~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~  363 (389)
T 3vfd_A          331 LGPIRELKPEQVKNMSASEMRNIRLSDFTESLK  363 (389)
T ss_dssp             THHHHTSCCC---CCSSSCCCCCCHHHHHHHHH
T ss_pred             HHHHHhhhhhhhhccchhhcCCcCHHHHHHHHH
Confidence            6655442            34678888888764

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.28  E-value=6.5e-12  Score=138.28  Aligned_cols=188  Identities=17%  Similarity=0.126  Sum_probs=113.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCC--ccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGK--GSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~--~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      .-.|||+||||||||+|++++|+.+....+. ++.  .+..+|.+...++.-.     ..+-   .....|+||||+|.+
T Consensus       243 prGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF-----~~Ar---~~aP~IIfiDEiDai  314 (467)
T 4b4t_H          243 PKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELF-----EMAR---TKKACIIFFDEIDAV  314 (467)
T ss_dssp             CSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHH-----HHHH---HTCSEEEEEECCTTT
T ss_pred             CCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHH-----HHHH---hcCCceEeecccccc
Confidence            3589999999999999999999977543321 111  1111222111111100     0000   112569999999987


Q ss_pred             ChH-----------HH---HHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--c
Q psy17703        422 SDT-----------TR---SILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--R  485 (720)
Q Consensus       422 ~~~-----------~~---~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--R  485 (720)
                      ...           .+   ..++..|+..           .-..++.||||+|...             .|++||++  |
T Consensus       315 ~~~R~~~~~~~~~~~~~~l~~lL~~lDg~-----------~~~~~ViVIaATNrpd-------------~LDpALlRpGR  370 (467)
T 4b4t_H          315 GGARFDDGAGGDNEVQRTMLELITQLDGF-----------DPRGNIKVMFATNRPN-------------TLDPALLRPGR  370 (467)
T ss_dssp             SBCCSSSSCGGGGHHHHHHHHHHHHHHSS-----------CCTTTEEEEEECSCTT-------------SBCHHHHSTTT
T ss_pred             cccccCcCCCccHHHHHHHHHHHHHhhcc-----------CCCCcEEEEeCCCCcc-------------cCChhhhcccc
Confidence            421           12   2333444311           1134678999999765             68999998  9


Q ss_pred             ceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHH
Q psy17703        486 FDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLI  564 (720)
Q Consensus       486 Fdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~li  564 (720)
                      ||..+.+..|..+.+.+.+..|.            +. .+.+.+.   .+.|..    .      ..  ..|.+.|.+++
T Consensus       371 FD~~I~i~lPd~~~R~~Ilk~~l------------~~~~l~~dvd---l~~LA~----~------T~--GfSGADI~~l~  423 (467)
T 4b4t_H          371 IDRKVEFSLPDLEGRANIFRIHS------------KSMSVERGIR---WELISR----L------CP--NSTGAELRSVC  423 (467)
T ss_dssp             CCEEECCCCCCHHHHHHHHHHHH------------TTSCBCSSCC---HHHHHH----H------CC--SCCHHHHHHHH
T ss_pred             ccEEEEeCCcCHHHHHHHHHHHh------------cCCCCCCCCC---HHHHHH----H------CC--CCCHHHHHHHH
Confidence            99999998887766555444321            11 1122221   122221    1      11  13569999999


Q ss_pred             HHHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703        565 RLSEAHAKMRYSETVEVQDVDEAWRLH  591 (720)
Q Consensus       565 rla~A~A~l~~~~~V~~~Dv~~Ai~l~  591 (720)
                      +-|.-.|..+.+..|+.+|+..|+.-+
T Consensus       424 ~eAa~~Air~~~~~it~~Df~~Al~kV  450 (467)
T 4b4t_H          424 TEAGMFAIRARRKVATEKDFLKAVDKV  450 (467)
T ss_dssp             HHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence            988888888889999999999998643

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.27  E-value=5.4e-11  Score=133.14  Aligned_cols=141  Identities=20%  Similarity=0.229  Sum_probs=96.4

Q ss_pred             ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703        411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF  490 (720)
Q Consensus       411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~  490 (720)
                      +|++|||++.|+.+.+++|+.+||+....+   -+..+ +....+|+++|          .+.....++++++|||.. +
T Consensus       297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~---~il~t-n~~~~~i~~~~----------~~~~~~~l~~~i~sR~~~-~  361 (456)
T 2c9o_A          297 GVLFVDEVHMLDIECFTYLHRALESSIAPI---VIFAS-NRGNCVIRGTE----------DITSPHGIPLDLLDRVMI-I  361 (456)
T ss_dssp             CEEEEESGGGCBHHHHHHHHHHTTSTTCCE---EEEEE-CCSEEECBTTS----------SCEEETTCCHHHHTTEEE-E
T ss_pred             eEEEEechhhcCHHHHHHHHHHhhccCCCE---EEEec-CCccccccccc----------cccccccCChhHHhhcce-e
Confidence            699999999999999999999999642110   00001 12222333333          112233699999999976 5


Q ss_pred             EecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703        491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH  570 (720)
Q Consensus       491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~  570 (720)
                      .+.+++.++....|..             ..+.....+++++.+.+.....            ..++|....+++.|.+.
T Consensus       362 ~~~~~~~~e~~~iL~~-------------~~~~~~~~~~~~~~~~i~~~a~------------~g~~r~a~~ll~~a~~~  416 (456)
T 2c9o_A          362 RTMLYTPQEMKQIIKI-------------RAQTEGINISEEALNHLGEIGT------------KTTLRYSVQLLTPANLL  416 (456)
T ss_dssp             ECCCCCHHHHHHHHHH-------------HHHHHTCCBCHHHHHHHHHHHH------------HSCHHHHHHTHHHHHHH
T ss_pred             eCCCCCHHHHHHHHHH-------------HHHHhCCCCCHHHHHHHHHHcc------------CCCHHHHHHHHHHHHHH
Confidence            7777776655444332             1111234688888887775431            12579999999999999


Q ss_pred             HHHcCCCCCCHHhHHHHHHHH
Q psy17703        571 AKMRYSETVEVQDVDEAWRLH  591 (720)
Q Consensus       571 A~l~~~~~V~~~Dv~~Ai~l~  591 (720)
                      |.++++..|+.+|+.+|+.++
T Consensus       417 A~~~~~~~v~~~~v~~~~~~~  437 (456)
T 2c9o_A          417 AKINGKDSIEKEHVEEISELF  437 (456)
T ss_dssp             HHHTTCSSBCHHHHHHHHHHS
T ss_pred             HhhcCCCccCHHHHHHHHHHh
Confidence            999999999999999998874

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.26  E-value=1.9e-10  Score=136.90  Aligned_cols=55  Identities=22%  Similarity=0.294  Sum_probs=46.1

Q ss_pred             cccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCC
Q psy17703        658 VLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC  714 (720)
Q Consensus       658 v~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~  714 (720)
                      ..+..++.++||++++..+....+++.|++..+.... |....+ .++.|++++||-
T Consensus       554 ~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~-g~~~~~-~~~~iI~tsN~~  608 (758)
T 1r6b_X          554 IKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNN-GRKADF-RNVVLVMTTNAG  608 (758)
T ss_dssp             HHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETT-TEEEEC-TTEEEEEEECSS
T ss_pred             HhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCC-CCEEec-CCeEEEEecCcc
Confidence            3455678899999999999999999999999988754 666665 789999999983

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.26  E-value=3.1e-11  Score=124.25  Aligned_cols=186  Identities=19%  Similarity=0.183  Sum_probs=111.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCC-ccccCCccccccccceeecCccccceeeecceeeec---CCceeecccccc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRS-QYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLA---DSGVCCIDEFDK  420 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~-~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~la---d~gI~~IDEidk  420 (720)
                      ..++||+||||||||++++++++.+... ++.++.....  .   ...... ...   .+.+..+   ..++++|||+|.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~--~---~~~~~~-~~~---~~~~~~a~~~~~~il~iDeid~  115 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE--M---FVGVGA-SRV---RDMFEQAKKAAPCIIFIDEIDA  115 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT--S---CCCCCH-HHH---HHHHHHHHTTCSEEEEETTHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH--H---hhhhhH-HHH---HHHHHHHHHcCCeeehhhhhhh
Confidence            3479999999999999999999977532 2222211100  0   000000 000   0001111   236999999987


Q ss_pred             CChH--------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--
Q psy17703        421 MSDT--------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--  484 (720)
Q Consensus       421 m~~~--------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--  484 (720)
                      +...              ....++..|+..           .-+.++.+|+|+|...             .+++++++  
T Consensus       116 l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~~~vI~~tn~~~-------------~l~~~l~r~~  171 (257)
T 1lv7_A          116 VGRQRGAGLGGGHDEREQTLNQMLVEMDGF-----------EGNEGIIVIAATNRPD-------------VLDPALLRPG  171 (257)
T ss_dssp             HTCCCSTTSCCTTCHHHHHHHHHHHHHHTC-----------CSSSCEEEEEEESCTT-------------TSCGGGGSTT
T ss_pred             hccCCCCCcCCCchHHHHHHHHHHHHhhCc-----------ccCCCEEEEEeeCCch-------------hCCHHHcCCC
Confidence            7542              223344444421           1135688999999764             47888888  


Q ss_pred             cceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHH-HHHHHHHHHHhhhcCCCCCCcc-cCHHHHHH
Q psy17703        485 RFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEA-SQRLIQTYVDMRKLGAGRGRIS-AYPRQLES  562 (720)
Q Consensus       485 RFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea-~~~l~~~y~~lr~~~~~~~~~~-~t~R~le~  562 (720)
                      ||+..+.+..|+.+++...+..         ++   +.  . .+++++ ...+..             .++ .++|+++.
T Consensus       172 rf~~~i~i~~P~~~~r~~il~~---------~~---~~--~-~l~~~~~~~~la~-------------~~~G~~~~dl~~  223 (257)
T 1lv7_A          172 RFDRQVVVGLPDVRGREQILKV---------HM---RR--V-PLAPDIDAAIIAR-------------GTPGFSGADLAN  223 (257)
T ss_dssp             SSCEEEECCCCCHHHHHHHHHH---------HH---TT--S-CBCTTCCHHHHHH-------------TCTTCCHHHHHH
T ss_pred             cCCeEEEeCCCCHHHHHHHHHH---------HH---hc--C-CCCccccHHHHHH-------------HcCCCCHHHHHH
Confidence            9998888877766554333321         11   11  1 122222 111110             122 36799999


Q ss_pred             HHHHHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703        563 LIRLSEAHAKMRYSETVEVQDVDEAWRLH  591 (720)
Q Consensus       563 lirla~A~A~l~~~~~V~~~Dv~~Ai~l~  591 (720)
                      +++-|...|..+.+..|+.+|+.+|+..+
T Consensus       224 l~~~a~~~a~~~~~~~i~~~~~~~a~~~~  252 (257)
T 1lv7_A          224 LVNEAALFAARGNKRVVSMVEFEKAKDKI  252 (257)
T ss_dssp             HHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence            99999999999888999999999998743

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.25  E-value=1.3e-11  Score=135.96  Aligned_cols=186  Identities=19%  Similarity=0.225  Sum_probs=110.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCC--ccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGK--GSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~--~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      -.+||+||||||||++++++|+.+....+. ++.  .+..+|.+...++.-..     .+.   .....|+||||+|.+.
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~-----~A~---~~aP~IifiDEiD~i~  278 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFR-----LAR---ENAPSIIFIDEVDSIA  278 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHH-----HHH---HTCSEEEEEECTHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHH-----HHH---HcCCCeeechhhhhhh
Confidence            369999999999999999999987654332 111  11112222111111000     000   1125799999998642


Q ss_pred             h-----------H---HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cc
Q psy17703        423 D-----------T---TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RF  486 (720)
Q Consensus       423 ~-----------~---~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RF  486 (720)
                      .           .   ....|+..|+.-.           -..++.||||||..+             .|++||++  ||
T Consensus       279 ~~R~~~~~~~~~~~~r~l~~lL~~ldg~~-----------~~~~v~vI~aTN~~~-------------~LD~AllRpGRf  334 (428)
T 4b4t_K          279 TKRFDAQTGSDREVQRILIELLTQMDGFD-----------QSTNVKVIMATNRAD-------------TLDPALLRPGRL  334 (428)
T ss_dssp             CSCSSSCSCCCCHHHHHHHHHHHHHHHSC-----------SSCSEEEEEEESCSS-------------SCCHHHHSSSSE
T ss_pred             ccccCCCCCCChHHHHHHHHHHHHhhCCC-----------CCCCEEEEEecCChh-------------hcChhhhcCCcc
Confidence            1           1   2344555554311           123578999999665             69999998  99


Q ss_pred             eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHh-hcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703        487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQE-HLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR  565 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir  565 (720)
                      |..+.++++|+.+....|-+        .+   .+. .+.+.+.   .+.++..     .     .  ..|.+.+.++++
T Consensus       335 d~~I~~p~lPd~~~R~~Il~--------~~---~~~~~l~~~~d---l~~lA~~-----t-----~--G~sgadi~~l~~  388 (428)
T 4b4t_K          335 DRKIEFPSLRDRRERRLIFG--------TI---ASKMSLAPEAD---LDSLIIR-----N-----D--SLSGAVIAAIMQ  388 (428)
T ss_dssp             EEEEECCSSCCHHHHHHHHH--------HH---HHSSCBCTTCC---HHHHHHH-----T-----T--TCCHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHH--------HH---hcCCCCCcccC---HHHHHHH-----C-----C--CCCHHHHHHHHH
Confidence            99998976555443322221        11   111 1122211   2222211     1     1  245699999999


Q ss_pred             HHHHHHHHcCCCCCCHHhHHHHHH
Q psy17703        566 LSEAHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       566 la~A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      -|.-.|..+.+..|+.+|+.+|+.
T Consensus       389 eA~~~a~r~~~~~i~~~d~~~A~~  412 (428)
T 4b4t_K          389 EAGLRAVRKNRYVILQSDLEEAYA  412 (428)
T ss_dssp             HHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHH
Confidence            888888888899999999999965

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.25  E-value=1.3e-11  Score=131.68  Aligned_cols=171  Identities=19%  Similarity=0.179  Sum_probs=99.5

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCc--cccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKG--SSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~--ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      ..++||+||||||||++++++++.+....+. ++..  +...|.+....+     .. +.  .......+|+||||+|.+
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~-----~~-f~--~a~~~~~~vl~iDEid~l  122 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVK-----QL-FA--MARENKPSIIFIDQVDAL  122 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHH-----HH-HH--HHHHTSSEEEEEECGGGG
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHH-----HH-HH--HHHhcCCeEEEechhhhh
Confidence            4689999999999999999999976543221 1000  000010000000     00 00  001123579999999998


Q ss_pred             ChH-----------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703        422 SDT-----------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF  490 (720)
Q Consensus       422 ~~~-----------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~  490 (720)
                      ...           .+..++..|+...          ..+.++.||||+|...             .|++++++||+..+
T Consensus       123 ~~~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vi~atn~~~-------------~ld~al~~Rf~~~i  179 (322)
T 3eie_A          123 TGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVLGATNIPW-------------QLDSAIRRRFERRI  179 (322)
T ss_dssp             SCC------CCTHHHHHHHHHHHGGGG----------TSCCCEEEEEEESCGG-------------GSCHHHHHHCCEEE
T ss_pred             hccCCCCcchHHHHHHHHHHHHhcccc----------ccCCceEEEEecCChh-------------hCCHHHHcccCeEE
Confidence            652           3455666664321          1134688999999654             58999999999888


Q ss_pred             EecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703        491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH  570 (720)
Q Consensus       491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~  570 (720)
                      .+..|+.++....+..+            ++ .....++++..+.+....            -..+.+.+..+++-|...
T Consensus       180 ~~~~p~~~~r~~il~~~------------~~-~~~~~~~~~~l~~la~~t------------~g~sg~di~~l~~~a~~~  234 (322)
T 3eie_A          180 YIPLPDLAARTTMFEIN------------VG-DTPCVLTKEDYRTLGAMT------------EGYSGSDIAVVVKDALMQ  234 (322)
T ss_dssp             ECCCCCHHHHHHHHHHH------------HT-TCCCCCCHHHHHHHHHTT------------TTCCHHHHHHHHHHHTTH
T ss_pred             EeCCCCHHHHHHHHHHH------------hc-cCCCCCCHHHHHHHHHHc------------CCCCHHHHHHHHHHHHHH
Confidence            88887766554433321            11 123345666666554211            113458888888766444


Q ss_pred             H
Q psy17703        571 A  571 (720)
Q Consensus       571 A  571 (720)
                      |
T Consensus       235 a  235 (322)
T 3eie_A          235 P  235 (322)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.25  E-value=3.2e-11  Score=119.62  Aligned_cols=181  Identities=17%  Similarity=0.219  Sum_probs=109.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCcc-----ccceeeecceeeecCCceeecccccc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPE-----TRQMVLQTGALVLADSGVCCIDEFDK  420 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~-----~~~~~~~~G~l~lad~gI~~IDEidk  420 (720)
                      .|+||+||||+|||++++.+++.+....+    ......+.........     ...+ ...........++++|||++.
T Consensus        39 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vliiDe~~~  113 (226)
T 2chg_A           39 PHLLFSGPPGTGKTATAIALARDLFGENW----RDNFIEMNASDERGIDVVRHKIKEF-ARTAPIGGAPFKIIFLDEADA  113 (226)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHHGGGG----GGGEEEEETTCTTCHHHHHHHHHHH-HTSCCSTTCSCEEEEEETGGG
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHhcccc----ccceEEeccccccChHHHHHHHHHH-hcccCCCccCceEEEEeChhh
Confidence            46999999999999999999986521100    0000000000000000     0000 000011123567999999999


Q ss_pred             CChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHH
Q psy17703        421 MSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQF  500 (720)
Q Consensus       421 m~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~  500 (720)
                      ++.+.+..|+..+++.             +.++.+|+++|...             .+.+++.+||. .+.+.+++.++.
T Consensus       114 l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~~~-------------~~~~~l~~r~~-~i~~~~~~~~~~  166 (226)
T 2chg_A          114 LTADAQAALRRTMEMY-------------SKSCRFILSCNYVS-------------RIIEPIQSRCA-VFRFKPVPKEAM  166 (226)
T ss_dssp             SCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG-------------GSCHHHHTTSE-EEECCCCCHHHH
T ss_pred             cCHHHHHHHHHHHHhc-------------CCCCeEEEEeCChh-------------hcCHHHHHhCc-eeecCCCCHHHH
Confidence            9999999999999863             23567788887542             47899999998 777777766554


Q ss_pred             HHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCC
Q psy17703        501 DARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVE  580 (720)
Q Consensus       501 d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~  580 (720)
                      ...+.         .+   ++. ....+++++.+.+....             ..++|.+..+++.+...+     +.|+
T Consensus       167 ~~~l~---------~~---~~~-~~~~~~~~~~~~l~~~~-------------~g~~r~l~~~l~~~~~~~-----~~I~  215 (226)
T 2chg_A          167 KKRLL---------EI---CEK-EGVKITEDGLEALIYIS-------------GGDFRKAINALQGAAAIG-----EVVD  215 (226)
T ss_dssp             HHHHH---------HH---HHH-HTCCBCHHHHHHHHHHH-------------TTCHHHHHHHHHHHHHTC-----SCBC
T ss_pred             HHHHH---------HH---HHH-cCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHHhcC-----ceec
Confidence            33322         11   111 23457888877776432             234687777666443332     6899


Q ss_pred             HHhHHHHHH
Q psy17703        581 VQDVDEAWR  589 (720)
Q Consensus       581 ~~Dv~~Ai~  589 (720)
                      .+|+++|+.
T Consensus       216 ~~~v~~~~~  224 (226)
T 2chg_A          216 ADTIYQITA  224 (226)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999999865

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.24  E-value=3.4e-11  Score=130.36  Aligned_cols=172  Identities=17%  Similarity=0.175  Sum_probs=99.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceee---ecCCceeeccccccC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALV---LADSGVCCIDEFDKM  421 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~---lad~gI~~IDEidkm  421 (720)
                      ..++||+||||||||++++++++.+....+.- ..+   .+........  ... + ...+.   ....+|+||||+|.+
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v-~~~---~l~~~~~g~~--~~~-~-~~~f~~a~~~~~~vl~iDEid~l  155 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV-SSS---DLVSKWMGES--EKL-V-KQLFAMARENKPSIIFIDQVDAL  155 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE-EHH---HHHSCC---C--HHH-H-HHHHHHHHHTSSEEEEEECGGGG
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe-eHH---HHhhhhcchH--HHH-H-HHHHHHHHHcCCeEEEEechHhh
Confidence            46899999999999999999999775322210 000   0000000000  000 0 00011   124679999999998


Q ss_pred             ChH-----------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703        422 SDT-----------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF  490 (720)
Q Consensus       422 ~~~-----------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~  490 (720)
                      ...           .++.|+..|+...          ..+.++.||||+|...             .+++++++||+..+
T Consensus       156 ~~~r~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vI~atn~~~-------------~ld~al~rRf~~~i  212 (355)
T 2qp9_X          156 TGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVLGATNIPW-------------QLDSAIRRRFERRI  212 (355)
T ss_dssp             TC------CTHHHHHHHHHHHHHHHCC-------------CCEEEEEEESCGG-------------GSCHHHHHTCCEEE
T ss_pred             cccCCCCcchHHHHHHHHHHHHhhccc----------ccCCCeEEEeecCCcc-------------cCCHHHHcccCEEE
Confidence            743           3456666665321          1134688999999754             58899999999888


Q ss_pred             EecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703        491 LLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH  570 (720)
Q Consensus       491 ~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~  570 (720)
                      .+..|+.+++...+..+            ++ .....+++...+.|...-          .  ..+.|.+..+++-|...
T Consensus       213 ~i~~P~~~~r~~il~~~------------l~-~~~~~~~~~~l~~la~~t----------~--G~sg~dl~~l~~~A~~~  267 (355)
T 2qp9_X          213 YIPLPDLAARTTMFEIN------------VG-DTPSVLTKEDYRTLGAMT----------E--GYSGSDIAVVVKDALMQ  267 (355)
T ss_dssp             ECCCCCHHHHHHHHHHH------------HT-TSCBCCCHHHHHHHHHHT----------T--TCCHHHHHHHHHHHHHH
T ss_pred             EeCCcCHHHHHHHHHHH------------Hh-hCCCCCCHHHHHHHHHHc----------C--CCCHHHHHHHHHHHHHH
Confidence            88877766544333321            11 122245666666655321          0  13568888888766554


Q ss_pred             HH
Q psy17703        571 AK  572 (720)
Q Consensus       571 A~  572 (720)
                      |.
T Consensus       268 a~  269 (355)
T 2qp9_X          268 PI  269 (355)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.23  E-value=4.8e-11  Score=129.30  Aligned_cols=189  Identities=16%  Similarity=0.176  Sum_probs=109.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCccccccccceeecCccccce--eee--cceeeecCCceeeccccc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGSSAVGLTAYITKDPETRQM--VLQ--TGALVLADSGVCCIDEFD  419 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~ss~~glta~~~~~~~~~~~--~~~--~G~l~lad~gI~~IDEid  419 (720)
                      ..++||+||||||||++++++++.+....+. ++.     .+.     ....+..  ..+  -........+++||||+|
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~-----~l~-----~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid  186 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISAS-----SLT-----SKWVGEGEKMVRALFAVARCQQPAVIFIDEID  186 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGG-----GGC-----CSSTTHHHHHHHHHHHHHHHTCSEEEEEETHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehH-----Hhh-----ccccchHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence            4689999999999999999999977432211 110     000     0000000  000  000011346899999999


Q ss_pred             cCCh-----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703        420 KMSD-----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL  488 (720)
Q Consensus       420 km~~-----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl  488 (720)
                      .+..           ..+..|+..|+..         ....+.++.||||+|+..             .+++++++||+.
T Consensus       187 ~l~~~~~~~~~~~~~~~~~~lL~~l~~~---------~~~~~~~v~vI~atn~~~-------------~l~~~l~~Rf~~  244 (357)
T 3d8b_A          187 SLLSQRGDGEHESSRRIKTEFLVQLDGA---------TTSSEDRILVVGATNRPQ-------------EIDEAARRRLVK  244 (357)
T ss_dssp             HHTBC------CHHHHHHHHHHHHHHC-------------CCCCEEEEEEESCGG-------------GBCHHHHTTCCE
T ss_pred             hhhccCCCCcchHHHHHHHHHHHHHhcc---------cccCCCCEEEEEecCChh-------------hCCHHHHhhCce
Confidence            8843           2344555555422         222346789999999753             478999999998


Q ss_pred             EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE  568 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~  568 (720)
                      .+.+..|+.++....+..+            ++ .....+++++.+.+....            -..+.+.+..|++-|.
T Consensus       245 ~i~i~~p~~~~r~~il~~~------------~~-~~~~~l~~~~l~~la~~t------------~G~s~~dl~~l~~~a~  299 (357)
T 3d8b_A          245 RLYIPLPEASARKQIVINL------------MS-KEQCCLSEEEIEQIVQQS------------DAFSGADMTQLCREAS  299 (357)
T ss_dssp             EEECCCCCHHHHHHHHHHH------------HH-TSCBCCCHHHHHHHHHHT------------TTCCHHHHHHHHHHHH
T ss_pred             EEEeCCcCHHHHHHHHHHH------------Hh-hcCCCccHHHHHHHHHHc------------CCCCHHHHHHHHHHHH
Confidence            8888877766544333211            11 123346666666655321            0134577888777665


Q ss_pred             HHHHHcC------------CCCCCHHhHHHHHHH
Q psy17703        569 AHAKMRY------------SETVEVQDVDEAWRL  590 (720)
Q Consensus       569 A~A~l~~------------~~~V~~~Dv~~Ai~l  590 (720)
                      ..|.-++            ...|+.+|+..|+.-
T Consensus       300 ~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~  333 (357)
T 3d8b_A          300 LGPIRSLQTADIATITPDQVRPIAYIDFENAFRT  333 (357)
T ss_dssp             THHHHHCCC----------CCCBCHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhccccccccCCcCHHHHHHHHHh
Confidence            4443322            246788888888653

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.23  E-value=2.8e-11  Score=129.24  Aligned_cols=172  Identities=22%  Similarity=0.184  Sum_probs=96.5

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCcc--ccceeeecceeeecCCceeeccccccCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPE--TRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~--~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      ..++||+||||||||++++++++.+....+.....+....   .......  .... +.  .......+|+||||+|.+.
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~---~~~g~~~~~~~~l-f~--~a~~~~~~vl~iDEid~l~  118 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS---KWLGESEKLVKNL-FQ--LARENKPSIIFIDEIDSLC  118 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC---SSCCSCHHHHHHH-HH--HHHHTSSEEEEEETTTGGG
T ss_pred             CceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh---hhhhHHHHHHHHH-HH--HHHhcCCcEEEeecHHHhc
Confidence            3589999999999999999999987322211111111000   0000000  0000 00  0011245799999999983


Q ss_pred             h-----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEE
Q psy17703        423 D-----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFL  491 (720)
Q Consensus       423 ~-----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~  491 (720)
                      .           ...+.|+..|+...          ..+.++.+|||+|...             .+++++++||+..+.
T Consensus       119 ~~~~~~~~~~~~~~~~~ll~~ld~~~----------~~~~~v~vI~atn~~~-------------~ld~al~rRf~~~i~  175 (322)
T 1xwi_A          119 GSRSENESEAARRIKTEFLVQMQGVG----------VDNDGILVLGATNIPW-------------VLDSAIRRRFEKRIY  175 (322)
T ss_dssp             CCSSSCCTTHHHHHHHHHHHHHHCSS----------SCCTTEEEEEEESCTT-------------TSCHHHHHTCCEEEE
T ss_pred             cccccccchHHHHHHHHHHHHHhccc----------ccCCCEEEEEecCCcc-------------cCCHHHHhhcCeEEE
Confidence            2           22344555554211          1135688999999764             488999999998888


Q ss_pred             ecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHH
Q psy17703        492 LLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAH  570 (720)
Q Consensus       492 l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~  570 (720)
                      +..|+.+++...+..++            + .....++++..+.|...       .     -..+.+.+..+++-|.-.
T Consensus       176 i~~P~~~~r~~il~~~l------------~-~~~~~l~~~~l~~la~~-------t-----~G~sgadl~~l~~~A~~~  229 (322)
T 1xwi_A          176 IPLPEPHARAAMFKLHL------------G-TTQNSLTEADFRELGRK-------T-----DGYSGADISIIVRDALMQ  229 (322)
T ss_dssp             CCCCCHHHHHHHHHHHH------------T-TCCBCCCHHHHHHHHHT-------C-----TTCCHHHHHHHHHHHHTH
T ss_pred             eCCcCHHHHHHHHHHHH------------h-cCCCCCCHHHHHHHHHH-------c-----CCCCHHHHHHHHHHHHHH
Confidence            88887665544433221            1 12334566655555421       0     113458888887755433

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.22  E-value=1.7e-11  Score=126.07  Aligned_cols=195  Identities=21%  Similarity=0.205  Sum_probs=102.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccc--cccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSS--AVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss--~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      ..++||+||||||||++++++++.+....+ ..+....  ..+......     ......+   .....+++||||+|.+
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~a---~~~~~~vl~iDeid~l  110 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARV-----RSLFKEA---RARAPCIVYIDEIDAV  110 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHH-----HHHHHHH---HHTCSEEEEEECC---
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHH-----HHHHHHH---HhcCCeEEEEeCcchh
Confidence            468999999999999999999997643222 1111100  000000000     0000000   0012579999999998


Q ss_pred             C------------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cce
Q psy17703        422 S------------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFD  487 (720)
Q Consensus       422 ~------------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFd  487 (720)
                      .            ...+..+.++++.-.      +.  ..+.++.+|+|+|...             .+++++++  ||+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~------~~--~~~~~~~vi~~tn~~~-------------~ld~~l~~~~R~~  169 (262)
T 2qz4_A          111 GKKRSTTMSGFSNTEEEQTLNQLLVEMD------GM--GTTDHVIVLASTNRAD-------------ILDGALMRPGRLD  169 (262)
T ss_dssp             ----------------CHHHHHHHHHHH------TC--CTTCCEEEEEEESCGG-------------GGGSGGGSTTSCC
T ss_pred             hccccccccCccchhHHHHHHHHHHHhh------Cc--CCCCCEEEEecCCChh-------------hcCHHHhcCCcCC
Confidence            3            233334444443210      00  1134688999999653             46789998  999


Q ss_pred             eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHH-HHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703        488 LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEA-SQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL  566 (720)
Q Consensus       488 li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea-~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl  566 (720)
                      ..+.+..|+.++....+.         .++..    .......+. .+.+..       ..     -..++|.+..+++.
T Consensus       170 ~~i~i~~p~~~~r~~il~---------~~~~~----~~~~~~~~~~~~~l~~-------~~-----~g~~~~~l~~l~~~  224 (262)
T 2qz4_A          170 RHVFIDLPTLQERREIFE---------QHLKS----LKLTQSSTFYSQRLAE-------LT-----PGFSGADIANICNE  224 (262)
T ss_dssp             EEEECCSCCHHHHHHHHH---------HHHHH----TTCCBTHHHHHHHHHH-------TC-----TTCCHHHHHHHHHH
T ss_pred             eEEEeCCcCHHHHHHHHH---------HHHHh----CCCCcchhhHHHHHHH-------HC-----CCCCHHHHHHHHHH
Confidence            888888777665443322         22221    122233222 122221       01     12356899999999


Q ss_pred             HHHHHHHcCCCCCCHHhHHHHHHHHHH
Q psy17703        567 SEAHAKMRYSETVEVQDVDEAWRLHRE  593 (720)
Q Consensus       567 a~A~A~l~~~~~V~~~Dv~~Ai~l~~~  593 (720)
                      |...|..+.+..|+.+|+.+|+.-+..
T Consensus       225 a~~~a~~~~~~~i~~~d~~~a~~~~~~  251 (262)
T 2qz4_A          225 AALHAAREGHTSVHTLNFEYAVERVLA  251 (262)
T ss_dssp             HHTC--------CCBCCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHhcc
Confidence            888888888899999999999875543

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.21  E-value=8.4e-11  Score=123.57  Aligned_cols=193  Identities=20%  Similarity=0.195  Sum_probs=110.5

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD  423 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~  423 (720)
                      ..++||+||||||||++++++++.+....+ .++..     +......... .....--........+++||||+|.+..
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~-----l~~~~~~~~~-~~~~~~~~~~~~~~~~vl~iDEid~l~~  127 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATECSATFLNISAAS-----LTSKYVGDGE-KLVRALFAVARHMQPSIIFIDEVDSLLS  127 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTT-----TSSSSCSCHH-HHHHHHHHHHHHTCSEEEEEETGGGTSB
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHH-----HhhcccchHH-HHHHHHHHHHHHcCCcEEEeccHHHhcc
Confidence            468999999999999999999997753221 11110     0000000000 0000000001123468999999998843


Q ss_pred             -----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEe
Q psy17703        424 -----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLL  492 (720)
Q Consensus       424 -----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l  492 (720)
                                 ..+..|+..|+.....        ....++.+++|+|...             .+++++++||+..+.+
T Consensus       128 ~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~~~v~vi~~tn~~~-------------~l~~~l~~R~~~~i~~  186 (297)
T 3b9p_A          128 ERSSSEHEASRRLKTEFLVEFDGLPGN--------PDGDRIVVLAATNRPQ-------------ELDEAALRRFTKRVYV  186 (297)
T ss_dssp             CC-----CCSHHHHHHHHHHHHHCC--------------CEEEEEEESCGG-------------GBCHHHHHHCCEEEEC
T ss_pred             ccccCcchHHHHHHHHHHHHHhccccc--------CCCCcEEEEeecCChh-------------hCCHHHHhhCCeEEEe
Confidence                       3345566666643221        1124578999999653             4789999999988888


Q ss_pred             cCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703        493 LDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK  572 (720)
Q Consensus       493 ~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~  572 (720)
                      ..|+.++....+..         +   ++ .....+++++.+.+...-            -..+.+.+..+++-|...|.
T Consensus       187 ~~p~~~~r~~il~~---------~---~~-~~~~~~~~~~~~~la~~~------------~g~~~~~l~~l~~~a~~~a~  241 (297)
T 3b9p_A          187 SLPDEQTRELLLNR---------L---LQ-KQGSPLDTEALRRLAKIT------------DGYSGSDLTALAKDAALEPI  241 (297)
T ss_dssp             CCCCHHHHHHHHHH---------H---HG-GGSCCSCHHHHHHHHHHT------------TTCCHHHHHHHHHHHTTHHH
T ss_pred             CCcCHHHHHHHHHH---------H---HH-hcCCCCCHHHHHHHHHHc------------CCCCHHHHHHHHHHHHHHHH
Confidence            77766554333221         1   11 123346666666655321            11334788888887766665


Q ss_pred             HcC------------CCCCCHHhHHHHHH
Q psy17703        573 MRY------------SETVEVQDVDEAWR  589 (720)
Q Consensus       573 l~~------------~~~V~~~Dv~~Ai~  589 (720)
                      -++            ...|+.+|+..|+.
T Consensus       242 r~~~~~~~~~~~~~~~~~i~~~d~~~a~~  270 (297)
T 3b9p_A          242 RELNVEQVKCLDISAMRAITEQDFHSSLK  270 (297)
T ss_dssp             HTCC--------CCCCCCCCHHHHHHHTT
T ss_pred             HHHhhhhcccccccccCCcCHHHHHHHHH
Confidence            444            24688888888744

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=99.18  E-value=4.7e-12  Score=118.88  Aligned_cols=114  Identities=11%  Similarity=0.117  Sum_probs=80.3

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD  423 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~  423 (720)
                      .+.||||+||||||||.+++++++.+++.++.....     +.         .  ....|.+..+++|++||||++.+++
T Consensus        26 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~-----~~---------~--~~~~~~~~~a~~~~l~lDei~~l~~   89 (143)
T 3co5_A           26 RTSPVFLTGEAGSPFETVARYFHKNGTPWVSPARVE-----YL---------I--DMPMELLQKAEGGVLYVGDIAQYSR   89 (143)
T ss_dssp             CSSCEEEEEETTCCHHHHHGGGCCTTSCEECCSSTT-----HH---------H--HCHHHHHHHTTTSEEEEEECTTCCH
T ss_pred             CCCcEEEECCCCccHHHHHHHHHHhCCCeEEechhh-----CC---------h--HhhhhHHHhCCCCeEEEeChHHCCH
Confidence            568999999999999999999987665222111111     00         0  0124555667889999999999999


Q ss_pred             HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee-EEEec
Q psy17703        424 TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL-IFLLL  493 (720)
Q Consensus       424 ~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl-i~~l~  493 (720)
                      +.|..|+++|+++.            +.++.+|+|+|.....+ .      .- +.+.|++||.. .+.++
T Consensus        90 ~~q~~Ll~~l~~~~------------~~~~~iI~~tn~~~~~~-~------~~-~~~~L~~rl~~~~i~lP  140 (143)
T 3co5_A           90 NIQTGITFIIGKAE------------RCRVRVIASCSYAAGSD-G------IS-CEEKLAGLFSESVVRIP  140 (143)
T ss_dssp             HHHHHHHHHHHHHT------------TTTCEEEEEEEECTTTC---------C-HHHHHHHHSSSEEEEEC
T ss_pred             HHHHHHHHHHHhCC------------CCCEEEEEecCCCHHHH-H------hC-ccHHHHHHhcCcEEeCC
Confidence            99999999998752            56788999999765332 1      11 66888999763 34443

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=99.16  E-value=1.1e-11  Score=116.60  Aligned_cols=114  Identities=14%  Similarity=0.200  Sum_probs=78.9

Q ss_pred             CCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        343 PAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       343 pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      +.+.||||+||||||||++++++++.+++.-.      ..+ ..+....+.     ....|.+..+++|++||||++.++
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~------~~v-~~~~~~~~~-----~~~~~~~~~a~~g~l~ldei~~l~   89 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQG------EFV-YRELTPDNA-----PQLNDFIALAQGGTLVLSHPEHLT   89 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTS------CCE-EEECCTTTS-----SCHHHHHHHHTTSCEEEECGGGSC
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhCCccCC------CEE-EECCCCCcc-----hhhhcHHHHcCCcEEEEcChHHCC
Confidence            36789999999999999999999997754211      111 111111111     122455566789999999999999


Q ss_pred             hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703        423 DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD  487 (720)
Q Consensus       423 ~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd  487 (720)
                      ++.|..|+++|+.             .+.++.+|+|+|.....      ....-.+.+.|+.|+.
T Consensus        90 ~~~q~~Ll~~l~~-------------~~~~~~~I~~t~~~~~~------~~~~~~~~~~L~~rl~  135 (145)
T 3n70_A           90 REQQYHLVQLQSQ-------------EHRPFRLIGIGDTSLVE------LAASNHIIAELYYCFA  135 (145)
T ss_dssp             HHHHHHHHHHHHS-------------SSCSSCEEEEESSCHHH------HHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhh-------------cCCCEEEEEECCcCHHH------HHHcCCCCHHHHHHhc
Confidence            9999999999932             24567899999964321      1223357788888876

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.14  E-value=7.7e-11  Score=131.41  Aligned_cols=173  Identities=21%  Similarity=0.154  Sum_probs=94.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh-
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD-  423 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~-  423 (720)
                      ..++||+||||||||++++++++.+....+.....+...+...+... ...... +.  .......+|+||||+|.+.. 
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~-~~~~~~-f~--~a~~~~~~vl~iDEid~l~~~  242 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESE-KLVKNL-FQ--LARENKPSIIFIDEIDSLCGS  242 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CC-CTHHHH-HH--HHHHSCSEEEEESCTTTTCCC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHH-HHHHHH-HH--HHHHcCCeEEEEechHhhccC
Confidence            36899999999999999999999873222211111111000000000 000000 00  00112457999999999832 


Q ss_pred             ----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEec
Q psy17703        424 ----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLL  493 (720)
Q Consensus       424 ----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~  493 (720)
                                ..++.|+..|+...          ..+.++.||+|+|+..             .++++|++||+.++.+.
T Consensus       243 ~~~~~~~~~~~~~~~lL~~l~~~~----------~~~~~v~vI~atn~~~-------------~ld~al~rRf~~~i~i~  299 (444)
T 2zan_A          243 RSENESEAARRIKTEFLVQMQGVG----------VDNDGILVLGATNIPW-------------VLDSAIRRRFEKRIYIP  299 (444)
T ss_dssp             SSCCCCGGGHHHHHHHHTTTTCSS----------CCCSSCEEEEEESCGG-------------GSCHHHHTTCCEEEECC
T ss_pred             CCCccccHHHHHHHHHHHHHhCcc----------cCCCCEEEEecCCCcc-------------ccCHHHHhhcceEEEeC
Confidence                      23334444443210          1245789999999764             48899999999888887


Q ss_pred             CCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703        494 DPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA  569 (720)
Q Consensus       494 d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A  569 (720)
                      .|+.+.+...+..++            + .....+++...+.|....            -..+.+.++.+++-|..
T Consensus       300 ~P~~~~r~~il~~~l------------~-~~~~~l~~~~l~~la~~t------------~G~sgadl~~l~~~a~~  350 (444)
T 2zan_A          300 LPEAHARAAMFRLHL------------G-STQNSLTEADFQELGRKT------------DGYSGADISIIVRDALM  350 (444)
T ss_dssp             CCCHHHHHHHHHHHH------------T-TSCEECCHHHHHHHHHHT------------TTCCHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHH------------h-cCCCCCCHHHHHHHHHHc------------CCCCHHHHHHHHHHHHH
Confidence            777665543333221            1 122235566555554321            01345788877775543

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.12  E-value=4.9e-10  Score=120.24  Aligned_cols=188  Identities=17%  Similarity=0.187  Sum_probs=112.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCC-----ccccCCccccccccceeecCccccceeee---------cceeeecCCc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRS-----QYTSGKGSSAVGLTAYITKDPETRQMVLQ---------TGALVLADSG  411 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~-----~~~~g~~ss~~glta~~~~~~~~~~~~~~---------~G~l~lad~g  411 (720)
                      .|+||+||||||||++++++++.+...     .+.....+...+.  ...++.. ..+...         .+....++.+
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  135 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI--SIVREKV-KNFARLTVSKPSKHDLENYPCPPYK  135 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH--HHHTTHH-HHHHHSCCCCCCTTHHHHSCCCSCE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccch--HHHHHHH-HHHhhhcccccchhhcccCCCCCce
Confidence            469999999999999999999875310     0100010110000  0011100 000000         0001123457


Q ss_pred             eeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEE
Q psy17703        412 VCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFL  491 (720)
Q Consensus       412 I~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~  491 (720)
                      +++|||++.+++..+++|+++|++..             .++.++.++|...             .+.+++.+||. .+.
T Consensus       136 vliiDE~~~l~~~~~~~Ll~~le~~~-------------~~~~~il~~~~~~-------------~l~~~l~sR~~-~i~  188 (353)
T 1sxj_D          136 IIILDEADSMTADAQSALRRTMETYS-------------GVTRFCLICNYVT-------------RIIDPLASQCS-KFR  188 (353)
T ss_dssp             EEEETTGGGSCHHHHHHHHHHHHHTT-------------TTEEEEEEESCGG-------------GSCHHHHHHSE-EEE
T ss_pred             EEEEECCCccCHHHHHHHHHHHHhcC-------------CCceEEEEeCchh-------------hCcchhhccCc-eEE
Confidence            99999999999999999999998742             2345566666432             47899999997 677


Q ss_pred             ecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHH
Q psy17703        492 LLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHA  571 (720)
Q Consensus       492 l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A  571 (720)
                      +.+++.++....+.             ..-..-...+++++.+.+.+...             ..+|.+..+++.+...+
T Consensus       189 ~~~~~~~~~~~~l~-------------~~~~~~~~~i~~~~l~~l~~~~~-------------G~~r~~~~~l~~~~~~~  242 (353)
T 1sxj_D          189 FKALDASNAIDRLR-------------FISEQENVKCDDGVLERILDISA-------------GDLRRGITLLQSASKGA  242 (353)
T ss_dssp             CCCCCHHHHHHHHH-------------HHHHTTTCCCCHHHHHHHHHHTS-------------SCHHHHHHHHHHTHHHH
T ss_pred             eCCCCHHHHHHHHH-------------HHHHHhCCCCCHHHHHHHHHHcC-------------CCHHHHHHHHHHHHHhc
Confidence            77777665433332             11111234588888888775421             24688777777655554


Q ss_pred             HHcCCC-CCCHHhHHHHHH
Q psy17703        572 KMRYSE-TVEVQDVDEAWR  589 (720)
Q Consensus       572 ~l~~~~-~V~~~Dv~~Ai~  589 (720)
                      .-.... .|+.+|+.+++.
T Consensus       243 ~~~~~~~~It~~~v~~~~~  261 (353)
T 1sxj_D          243 QYLGDGKNITSTQVEELAG  261 (353)
T ss_dssp             HHHCSCCCCCHHHHHHHHT
T ss_pred             CCCccCccccHHHHHHHhC
Confidence            332222 799999988754

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.12  E-value=8.4e-11  Score=132.35  Aligned_cols=192  Identities=18%  Similarity=0.159  Sum_probs=114.9

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccce-eeecceeeecC---Cceeeccccc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQM-VLQTGALVLAD---SGVCCIDEFD  419 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~-~~~~G~l~lad---~gI~~IDEid  419 (720)
                      ...++||+||||||||++++++++.+....+.         +.+........++. ....+.+..+.   .+++||||+|
T Consensus       237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~---------vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId  307 (489)
T 3hu3_A          237 PPRGILLYGPPGTGKTLIARAVANETGAFFFL---------INGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD  307 (489)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEE---------EEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred             CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEE---------EEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchh
Confidence            45689999999999999999999877432211         00000000000000 00011222222   3599999997


Q ss_pred             cCCh-----------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cc
Q psy17703        420 KMSD-----------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RF  486 (720)
Q Consensus       420 km~~-----------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RF  486 (720)
                      .+..           ..+..|+..|+...           .+.++.||||+|+..             .|++++++  ||
T Consensus       308 ~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-----------~~~~v~vIaaTn~~~-------------~Ld~al~r~gRf  363 (489)
T 3hu3_A          308 AIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMAATNRPN-------------SIDPALRRFGRF  363 (489)
T ss_dssp             HHCBCTTSCCCHHHHHHHHHHHHHHHHSC-----------TTSCEEEEEEESCGG-------------GBCGGGGSTTSS
T ss_pred             hhccccccccchHHHHHHHHHHHHhhccc-----------cCCceEEEEecCCcc-------------ccCHHHhCCCcC
Confidence            7654           56778899987432           245789999999753             47899999  99


Q ss_pred             eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703        487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL  566 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl  566 (720)
                      +..+.+..|+.+++...+..+.            + .. +...+...+.+..     +       ....+.|.+..|++-
T Consensus       364 ~~~i~i~~P~~~eR~~IL~~~~------------~-~~-~l~~~~~l~~la~-----~-------t~g~s~~dL~~L~~~  417 (489)
T 3hu3_A          364 DREVDIGIPDATGRLEILQIHT------------K-NM-KLADDVDLEQVAN-----E-------THGHVGADLAALCSE  417 (489)
T ss_dssp             CEEEECCCCCHHHHHHHHHHHT------------T-TS-CBCTTCCHHHHHH-----T-------CTTCCHHHHHHHHHH
T ss_pred             ceEEEeCCCCHHHHHHHHHHHH------------h-cC-CCcchhhHHHHHH-----H-------ccCCcHHHHHHHHHH
Confidence            9999998888776655544322            1 11 1111111111111     0       112346888888887


Q ss_pred             HHHHHHHcCCC-----------------CCCHHhHHHHHHHHHHH
Q psy17703        567 SEAHAKMRYSE-----------------TVEVQDVDEAWRLHREA  594 (720)
Q Consensus       567 a~A~A~l~~~~-----------------~V~~~Dv~~Ai~l~~~~  594 (720)
                      |...|..+..+                 .|+.+|+..|++-++-+
T Consensus       418 A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps  462 (489)
T 3hu3_A          418 AALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS  462 (489)
T ss_dssp             HHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHH
T ss_pred             HHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCch
Confidence            77777655443                 37788888887765543

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=99.12  E-value=5.6e-10  Score=112.51  Aligned_cols=187  Identities=17%  Similarity=0.211  Sum_probs=115.1

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD  423 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~  423 (720)
                      ...+++|+||||||||++++.+++.+...    +  .....+......+... . .++    .+...++++|||++.++.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~----~--~~~~~~~~~~~~~~~~-~-~~~----~~~~~~vliiDe~~~~~~  118 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANEL----E--RRSFYIPLGIHASIST-A-LLE----GLEQFDLICIDDVDAVAG  118 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHT----T--CCEEEEEGGGGGGSCG-G-GGT----TGGGSSEEEEETGGGGTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHc----C--CeEEEEEHHHHHHHHH-H-HHH----hccCCCEEEEeccccccC
Confidence            45799999999999999999999866321    0  0000010000000000 0 000    124568999999999987


Q ss_pred             HH--HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCCChHH
Q psy17703        424 TT--RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDPQSEQ  499 (720)
Q Consensus       424 ~~--~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~~~~~  499 (720)
                      +.  +..|+.+++...    .       .....+|.++|.....+.         .+.+++.+||.  .++.+..++.++
T Consensus       119 ~~~~~~~l~~~l~~~~----~-------~~~~~ii~~~~~~~~~~~---------~~~~~l~~r~~~~~~i~l~~~~~~~  178 (242)
T 3bos_A          119 HPLWEEAIFDLYNRVA----E-------QKRGSLIVSASASPMEAG---------FVLPDLVSRMHWGLTYQLQPMMDDE  178 (242)
T ss_dssp             CHHHHHHHHHHHHHHH----H-------HCSCEEEEEESSCTTTTT---------CCCHHHHHHHHHSEEEECCCCCGGG
T ss_pred             CHHHHHHHHHHHHHHH----H-------cCCCeEEEEcCCCHHHHH---------HhhhhhhhHhhcCceEEeCCCCHHH
Confidence            66  778888876431    0       112235666664432221         24588999996  788888887665


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCC
Q psy17703        500 FDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETV  579 (720)
Q Consensus       500 ~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V  579 (720)
                      ....+..         ++.    .....+++++.+.+...+             +.+.|.+..+++.+.+.|.... ..|
T Consensus       179 ~~~~l~~---------~~~----~~~~~~~~~~~~~l~~~~-------------~g~~r~l~~~l~~~~~~a~~~~-~~I  231 (242)
T 3bos_A          179 KLAALQR---------RAA----MRGLQLPEDVGRFLLNRM-------------ARDLRTLFDVLDRLDKASMVHQ-RKL  231 (242)
T ss_dssp             HHHHHHH---------HHH----HTTCCCCHHHHHHHHHHT-------------TTCHHHHHHHHHHHHHHHHHHT-CCC
T ss_pred             HHHHHHH---------HHH----HcCCCCCHHHHHHHHHHc-------------cCCHHHHHHHHHHHHHHHHHhC-CCC
Confidence            4433332         111    124468888888777542             2346999998888777776554 469


Q ss_pred             CHHhHHHHHH
Q psy17703        580 EVQDVDEAWR  589 (720)
Q Consensus       580 ~~~Dv~~Ai~  589 (720)
                      +.+|+.+++.
T Consensus       232 t~~~v~~~l~  241 (242)
T 3bos_A          232 TIPFVKEMLR  241 (242)
T ss_dssp             CHHHHHHHHT
T ss_pred             cHHHHHHHhh
Confidence            9999998864

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.11  E-value=4.8e-10  Score=123.78  Aligned_cols=117  Identities=20%  Similarity=0.310  Sum_probs=83.1

Q ss_pred             CCceeeccccccCChH------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecc-----cCCCCCCCCCcc
Q psy17703        409 DSGVCCIDEFDKMSDT------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAA-----NPCDSQWNTSKT  471 (720)
Q Consensus       409 d~gI~~IDEidkm~~~------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaa-----Np~~g~~~~~~~  471 (720)
                      .+|++++|||||+...            .|.+|+++||..+++. +- .... -.++.+|||+     ||.         
T Consensus       250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~-~~-~~~d-~~~ilfI~~gaf~~~~~~---------  317 (444)
T 1g41_A          250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-KH-GMVK-TDHILFIASGAFQVARPS---------  317 (444)
T ss_dssp             HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEE-TT-EEEE-CTTCEEEEEECCSSCCGG---------
T ss_pred             cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccc-cc-ceec-CCcEEEEeccccccCChh---------
Confidence            5789999999999753            5789999999877765 32 2222 2457788876     432         


Q ss_pred             cccccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHH-hhcCCcchHHHHHHHHHHHHHh
Q psy17703        472 IIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQ-EHLSPTLSEEASQRLIQTYVDM  543 (720)
Q Consensus       472 ~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar-~~~~p~ls~ea~~~l~~~y~~l  543 (720)
                           ++.|+|++||++++.+.+...++..+.+.. -...++++|..... ..+.-.++++|.+.|++.+.+.
T Consensus       318 -----dlipel~~R~~i~i~l~~lt~~e~~~Il~~-~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~  384 (444)
T 1g41_A          318 -----DLIPELQGRLPIRVELTALSAADFERILTE-PHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRV  384 (444)
T ss_dssp             -----GSCHHHHTTCCEEEECCCCCHHHHHHHHHS-STTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHH
T ss_pred             -----hcchHHhcccceeeeCCCCCHHHHHHHHHH-HHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHh
Confidence                 255899999999999998888776655532 12335566654433 3456689999999999887654

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.11  E-value=3.1e-10  Score=134.98  Aligned_cols=166  Identities=13%  Similarity=0.129  Sum_probs=86.1

Q ss_pred             CCCccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccccceeecCccccceeee----cceeeecCCceeeccc
Q psy17703        343 PAEINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLTAYITKDPETRQMVLQ----TGALVLADSGVCCIDE  417 (720)
Q Consensus       343 pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glta~~~~~~~~~~~~~~----~G~l~lad~gI~~IDE  417 (720)
                      +..-|+||+||||||||++++++++.+.+... ....+.....+..   .....|++...    -+.+..+.++|+||| 
T Consensus       199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-  274 (758)
T 3pxi_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-  274 (758)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC-
T ss_pred             CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-
Confidence            35569999999999999999999997632110 0001111111111   00011111110    011112357899999 


Q ss_pred             cccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCCh
Q psy17703        418 FDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQS  497 (720)
Q Consensus       418 idkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~  497 (720)
                         ...+.++.|+.+|+.+               .+.+|+|+|+...+        ..+.++++|.+||. .+.+..|+.
T Consensus       275 ---~~~~~~~~L~~~l~~~---------------~v~~I~at~~~~~~--------~~~~~d~al~rRf~-~i~v~~p~~  327 (758)
T 3pxi_A          275 ---AAIDASNILKPSLARG---------------ELQCIGATTLDEYR--------KYIEKDAALERRFQ-PIQVDQPSV  327 (758)
T ss_dssp             ---C--------CCCTTSS---------------SCEEEEECCTTTTH--------HHHTTCSHHHHSEE-EEECCCCCH
T ss_pred             ---CchhHHHHHHHHHhcC---------------CEEEEeCCChHHHH--------HHhhccHHHHhhCc-EEEeCCCCH
Confidence               4445566676666533               46789999976521        22357899999996 578888877


Q ss_pred             HHHHHHHHhhc-----------chhHHHHHHHHHHhhcCC-cchHHHHHHHHHH
Q psy17703        498 EQFDARLARHL-----------DITVLRDYIAYAQEHLSP-TLSEEASQRLIQT  539 (720)
Q Consensus       498 ~~~d~~la~~i-----------~~~~l~~~i~~ar~~~~p-~ls~ea~~~l~~~  539 (720)
                      ++....+....           +.+.+.....++..++.. .++..+.+.+...
T Consensus       328 ~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a  381 (758)
T 3pxi_A          328 DESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEA  381 (758)
T ss_dssp             HHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHH
Confidence            77666655322           333444444555554433 2344444444433

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.09  E-value=1.8e-10  Score=138.71  Aligned_cols=204  Identities=19%  Similarity=0.151  Sum_probs=115.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCccccccccceeecCc--cccce--eeecceeeecCCceeeccc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLTAYITKDP--ETRQM--VLQTGALVLADSGVCCIDE  417 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glta~~~~~~--~~~~~--~~~~G~l~lad~gI~~IDE  417 (720)
                      .++||+||||||||++++++++.+.+.    ++..+...............+  ..|.-  ..-.+++....++++||||
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDE  668 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDE  668 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEec
Confidence            489999999999999999999987432    111111111000000000000  00000  0001122234578999999


Q ss_pred             cccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCC-----C--Cccccc------ccCCChhhhc
Q psy17703        418 FDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWN-----T--SKTIID------NIRLPHTLLS  484 (720)
Q Consensus       418 idkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~-----~--~~~~~~------~~~l~~aLls  484 (720)
                      +++++++.++.|+++|+++.++-. .|..... .++.||+|+|.....+.     +  ...+.+      .-.+.++|++
T Consensus       669 i~~l~~~~~~~Ll~~l~~~~~~~~-~g~~vd~-~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~  746 (854)
T 1qvr_A          669 IEKAHPDVFNILLQILDDGRLTDS-HGRTVDF-RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN  746 (854)
T ss_dssp             GGGSCHHHHHHHHHHHTTTEECCS-SSCCEEC-TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             ccccCHHHHHHHHHHhccCceECC-CCCEecc-CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH
Confidence            999999999999999999987742 2333333 35779999996311100     0  000111      2258899999


Q ss_pred             cceeEEEecCCChHHHHHHHHhhcchhHHHHHHH-HHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHH
Q psy17703        485 RFDLIFLLLDPQSEQFDARLARHLDITVLRDYIA-YAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESL  563 (720)
Q Consensus       485 RFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~-~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~l  563 (720)
                      |||.++.+.++..++....+...     +.++-. +.+..+...+++++.+.|..+...          .+...|.|+.+
T Consensus       747 Rl~~~i~~~pl~~edi~~i~~~~-----l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~----------~~gn~R~L~~~  811 (854)
T 1qvr_A          747 RLDEIVVFRPLTKEQIRQIVEIQ-----LSYLRARLAEKRISLELTEAAKDFLAERGYD----------PVFGARPLRRV  811 (854)
T ss_dssp             TCSBCCBCCCCCHHHHHHHHHHH-----HHHHHHHHHTTTCEEEECHHHHHHHHHHHCB----------TTTBTSTHHHH
T ss_pred             hcCeEEeCCCCCHHHHHHHHHHH-----HHHHHHHHHhCCceEEECHHHHHHHHHcCCC----------CCCChHHHHHH
Confidence            99988888776644443332211     121111 111223467999999999876321          13344777777


Q ss_pred             HHH
Q psy17703        564 IRL  566 (720)
Q Consensus       564 irl  566 (720)
                      ++-
T Consensus       812 i~~  814 (854)
T 1qvr_A          812 IQR  814 (854)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=99.06  E-value=1.5e-09  Score=141.77  Aligned_cols=235  Identities=17%  Similarity=0.172  Sum_probs=137.3

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccc---cceeeecceeeec----CCceeecc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPET---RQMVLQTGALVLA----DSGVCCID  416 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~---~~~~~~~G~l~la----d~gI~~ID  416 (720)
                      .+.|+||+||||||||++++.+....+......-.-+  ...++........   .....+.|.+..+    ...|+|||
T Consensus      1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infs--a~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiD 1343 (2695)
T 4akg_A         1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFS--KDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCD 1343 (2695)
T ss_dssp             HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECC--TTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEee--cCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEec
Confidence            4579999999999999999655554433211110000  0001110100000   0001112322222    23599999


Q ss_pred             ccccCChH------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCC-CCCCCCcccccccCCChhhhccceeE
Q psy17703        417 EFDKMSDT------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD-SQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       417 Eidkm~~~------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~-g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      |+|....+      ..+.|++.||.+.+...+.+....+ .++.+||||||++ |+.         ..++++|++|| -+
T Consensus      1344 Einmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~-~~i~lIaA~Npp~~gGR---------~~l~~rllRrf-~v 1412 (2695)
T 4akg_A         1344 EINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTI-ERIHIVGACNPPTDPGR---------IPMSERFTRHA-AI 1412 (2695)
T ss_dssp             TTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEE-ESEEEEEEECCTTSTTC---------CCCCHHHHTTE-EE
T ss_pred             ccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEe-cCEEEEEecCCCccCCC---------ccCChhhhhee-eE
Confidence            98765433      6789999999988888777766666 7899999999985 331         25899999999 46


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcC--CCCCCcccCHHHHHHHHH-H
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLG--AGRGRISAYPRQLESLIR-L  566 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~--~~~~~~~~t~R~le~lir-l  566 (720)
                      +.+..|+++....++..++     +.++.... . -+.+.+....+.++.|..++..-  ..+.+...++|.+.++++ +
T Consensus      1413 i~i~~P~~~~l~~I~~~il-----~~~l~~~~-~-v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGl 1485 (2695)
T 4akg_A         1413 LYLGYPSGKSLSQIYEIYY-----KAIFKLVP-E-FRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGV 1485 (2695)
T ss_dssp             EECCCCTTTHHHHHHHHHH-----HHHTTSSG-G-GGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHH
T ss_pred             EEeCCCCHHHHHHHHHHHH-----HHHhccCH-H-HHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHH
Confidence            7777777776665555332     11111100 0 12345566677777777655432  235577788898877664 2


Q ss_pred             HHHH-------------------HHHcCCCCCCHHhHHHHHHHHHHHHHHh
Q psy17703        567 SEAH-------------------AKMRYSETVEVQDVDEAWRLHREALKQS  598 (720)
Q Consensus       567 a~A~-------------------A~l~~~~~V~~~Dv~~Ai~l~~~~l~~~  598 (720)
                      ..+.                   .|+-...-|+.+|-.....++.+.++..
T Consensus      1486 l~~~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~ 1536 (2695)
T 4akg_A         1486 YTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKY 1536 (2695)
T ss_dssp             HHHHHTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred             HhcCchhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            2221                   1122234567777777777766666543

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=99.06  E-value=3.1e-10  Score=120.26  Aligned_cols=181  Identities=18%  Similarity=0.261  Sum_probs=106.9

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCc----cccCCccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQ----YTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~----~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      .|+||+||||+|||++++++++.+....    +.....+...+..  ..+. ....+ ...+.+..+..++++|||++.+
T Consensus        47 ~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~-~~~~~~~~~~~~vliiDe~~~l  122 (327)
T 1iqp_A           47 PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGIN--VIRE-KVKEF-ARTKPIGGASFKIIFLDEADAL  122 (327)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHH--TTHH-HHHHH-HHSCCGGGCSCEEEEEETGGGS
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchH--HHHH-HHHHH-HhhCCcCCCCCeEEEEeCCCcC
Confidence            3799999999999999999998652110    0000000000000  0000 00000 0112222245789999999999


Q ss_pred             ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHH
Q psy17703        422 SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFD  501 (720)
Q Consensus       422 ~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d  501 (720)
                      +++.+++|+.+|++.             +..+.+|.++|...             .+.+++.+||. .+.+.+++.++..
T Consensus       123 ~~~~~~~L~~~le~~-------------~~~~~~i~~~~~~~-------------~l~~~l~sr~~-~~~~~~l~~~~~~  175 (327)
T 1iqp_A          123 TQDAQQALRRTMEMF-------------SSNVRFILSCNYSS-------------KIIEPIQSRCA-IFRFRPLRDEDIA  175 (327)
T ss_dssp             CHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG-------------GSCHHHHHTEE-EEECCCCCHHHHH
T ss_pred             CHHHHHHHHHHHHhc-------------CCCCeEEEEeCCcc-------------ccCHHHHhhCc-EEEecCCCHHHHH
Confidence            999999999999863             23456777777432             47899999998 6777777655443


Q ss_pred             HHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCH
Q psy17703        502 ARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEV  581 (720)
Q Consensus       502 ~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~  581 (720)
                      ..+.             ..-......+++++.+.+....             ..++|.+..+++.+..     ....++.
T Consensus       176 ~~l~-------------~~~~~~~~~~~~~~~~~l~~~~-------------~g~~r~~~~~l~~~~~-----~~~~i~~  224 (327)
T 1iqp_A          176 KRLR-------------YIAENEGLELTEEGLQAILYIA-------------EGDMRRAINILQAAAA-----LDKKITD  224 (327)
T ss_dssp             HHHH-------------HHHHTTTCEECHHHHHHHHHHH-------------TTCHHHHHHHHHHHHT-----TCSEECH
T ss_pred             HHHH-------------HHHHhcCCCCCHHHHHHHHHHC-------------CCCHHHHHHHHHHHHh-----cCCCCCH
Confidence            2222             2211224457888888777532             1245877776654322     2235777


Q ss_pred             HhHHHHH
Q psy17703        582 QDVDEAW  588 (720)
Q Consensus       582 ~Dv~~Ai  588 (720)
                      +++..+.
T Consensus       225 ~~v~~~~  231 (327)
T 1iqp_A          225 ENVFMVA  231 (327)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            7776653

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.04  E-value=6.1e-10  Score=125.23  Aligned_cols=182  Identities=24%  Similarity=0.232  Sum_probs=107.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccccceeecCccccceeeec-ceeeec---CCceeeccccccC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLTAYITKDPETRQMVLQT-GALVLA---DSGVCCIDEFDKM  421 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glta~~~~~~~~~~~~~~~-G~l~la---d~gI~~IDEidkm  421 (720)
                      ++||+||||||||+|+++++..+....+ .++...  ..        ...+.....- ..+..+   ..+++||||+|.+
T Consensus        66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~--~~--------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l  135 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF--VE--------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV  135 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGG--TS--------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHH--HH--------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHH
Confidence            4999999999999999999998753221 121110  00        0000000000 001111   2479999999987


Q ss_pred             Ch-----------H---HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--c
Q psy17703        422 SD-----------T---TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--R  485 (720)
Q Consensus       422 ~~-----------~---~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--R  485 (720)
                      ..           .   ..+.|+..|+...           .+..+.++|++|...             .|++++++  |
T Consensus       136 ~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-----------~~~~viviAatn~p~-------------~LD~aLlr~gR  191 (499)
T 2dhr_A          136 GRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATNRPD-------------ILDPALLRPGR  191 (499)
T ss_dssp             CCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-----------SSCCCEEEECCSCGG-------------GSCTTTSSTTS
T ss_pred             HHhhccCcCCCcHHHHHHHHHHHHHhcccc-----------cCccEEEEEecCChh-------------hcCcccccccc
Confidence            42           1   1233444443211           133567899999653             37889998  9


Q ss_pred             ceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHH-HHHHHHHHHHhhhcCCCCCCcc-cCHHHHHHH
Q psy17703        486 FDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEA-SQRLIQTYVDMRKLGAGRGRIS-AYPRQLESL  563 (720)
Q Consensus       486 Fdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea-~~~l~~~y~~lr~~~~~~~~~~-~t~R~le~l  563 (720)
                      ||..+.+..|+.+++...+..|.            +.   ..+++++ ...+.          .   .++ .+.|+|+.+
T Consensus       192 fdr~i~i~~Pd~~~R~~IL~~~~------------~~---~~l~~dv~l~~lA----------~---~t~G~~gadL~~l  243 (499)
T 2dhr_A          192 FDRQIAIDAPDVKGREQILRIHA------------RG---KPLAEDVDLALLA----------K---RTPGFVGADLENL  243 (499)
T ss_dssp             SCCEEECCCCCHHHHHHHHHHTT------------SS---SCCCCSSTTHHHH----------T---TSCSCCHHHHHHH
T ss_pred             cceEEecCCCCHHHHHHHHHHHH------------hc---CCCChHHHHHHHH----------H---hcCCCCHHHHHHH
Confidence            99988888887766555444331            11   1122221 11121          0   111 234999999


Q ss_pred             HHHHHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703        564 IRLSEAHAKMRYSETVEVQDVDEAWRL  590 (720)
Q Consensus       564 irla~A~A~l~~~~~V~~~Dv~~Ai~l  590 (720)
                      ++-|...|..+.+..|+.+|+.+|+.-
T Consensus       244 v~~Aa~~A~~~~~~~It~~dl~~al~~  270 (499)
T 2dhr_A          244 LNEAALLAAREGRRKITMKDLEEAADR  270 (499)
T ss_dssp             HHHHHHHHTTTCCSSCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence            998888887777788999999998764

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.04  E-value=7.3e-10  Score=123.89  Aligned_cols=183  Identities=26%  Similarity=0.279  Sum_probs=109.7

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccc--cccccceeecCccccceeeecceeeec---CCceeeccccc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSS--AVGLTAYITKDPETRQMVLQTGALVLA---DSGVCCIDEFD  419 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss--~~glta~~~~~~~~~~~~~~~G~l~la---d~gI~~IDEid  419 (720)
                      .++||+||||||||+|++++++.+....+ .++....  ..|.....          . .+.+..+   ...|+||||+|
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~----------~-r~lf~~A~~~~p~ILfIDEid  118 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAAR----------V-RDLFAQAKAHAPCIVFIDEID  118 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHH----------H-HHHHHHHHHTCSEEEEEETGG
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHH----------H-HHHHHHHHhcCCCEEEEechh
Confidence            46999999999999999999987643222 1111000  00100000          0 0111111   24699999999


Q ss_pred             cCChH--------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc-
Q psy17703        420 KMSDT--------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS-  484 (720)
Q Consensus       420 km~~~--------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls-  484 (720)
                      .+...              .++.|+..|+.-.           -+.++.||+|+|...             .+++++++ 
T Consensus       119 ~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~-----------~~~~viVIaaTn~~~-------------~Ld~allR~  174 (476)
T 2ce7_A          119 AVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD-----------SKEGIIVMAATNRPD-------------ILDPALLRP  174 (476)
T ss_dssp             GTCCC---------CHHHHHHHHHHHHHHHSC-----------GGGTEEEEEEESCGG-------------GSCGGGGST
T ss_pred             hhhhhcccccCcCcHHHHHHHHHHHHHHhccC-----------CCCCEEEEEecCChh-------------hhchhhccc
Confidence            98542              3445666665210           134688999999653             47888887 


Q ss_pred             -cceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHH-HHHHHHHHHHhhhcCCCCCCcccCHHHHHH
Q psy17703        485 -RFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEA-SQRLIQTYVDMRKLGAGRGRISAYPRQLES  562 (720)
Q Consensus       485 -RFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea-~~~l~~~y~~lr~~~~~~~~~~~t~R~le~  562 (720)
                       |||..+.+..|+.+++...+..|            ++.  .+ +.++. .+.+..     +  .     ...+.|.|+.
T Consensus       175 gRFd~~i~i~~Pd~~~R~~Il~~~------------~~~--~~-l~~~v~l~~la~-----~--t-----~G~sgadL~~  227 (476)
T 2ce7_A          175 GRFDKKIVVDPPDMLGRKKILEIH------------TRN--KP-LAEDVNLEIIAK-----R--T-----PGFVGADLEN  227 (476)
T ss_dssp             TSSCEEEECCCCCHHHHHHHHHHH------------HTT--SC-BCTTCCHHHHHH-----T--C-----TTCCHHHHHH
T ss_pred             CcceeEeecCCCCHHHHHHHHHHH------------HHh--CC-CcchhhHHHHHH-----h--c-----CCCcHHHHHH
Confidence             99998888877766554433322            111  11 11111 222211     0  0     1123589999


Q ss_pred             HHHHHHHHHHHcCCCCCCHHhHHHHHHH
Q psy17703        563 LIRLSEAHAKMRYSETVEVQDVDEAWRL  590 (720)
Q Consensus       563 lirla~A~A~l~~~~~V~~~Dv~~Ai~l  590 (720)
                      +++-|...|..+....|+.+|+.+|+.-
T Consensus       228 lv~~Aal~A~~~~~~~I~~~dl~~al~~  255 (476)
T 2ce7_A          228 LVNEAALLAAREGRDKITMKDFEEAIDR  255 (476)
T ss_dssp             HHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCeecHHHHHHHHHH
Confidence            9998888887777889999999998763

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.03  E-value=4.4e-11  Score=123.78  Aligned_cols=184  Identities=23%  Similarity=0.242  Sum_probs=105.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCcc--ccccccceeecCccccceeeecceeeec---CCceeeccccc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGS--SAVGLTAYITKDPETRQMVLQTGALVLA---DSGVCCIDEFD  419 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~s--s~~glta~~~~~~~~~~~~~~~G~l~la---d~gI~~IDEid  419 (720)
                      .++||+||||||||++++++++.+....+. .+...  ...+......           .+.+..+   ..+++||||+|
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------~~~~~~a~~~~~~vl~iDEid  113 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRV-----------RDLFETAKKQAPSIIFIDEID  113 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSS-----------STTHHHHHHSCSCEEEESCGG
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHH-----------HHHHHHHHhcCCeEEEEeChh
Confidence            469999999999999999999976432221 11100  0011100000           0111111   24899999999


Q ss_pred             cCChHH---------------HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc
Q psy17703        420 KMSDTT---------------RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS  484 (720)
Q Consensus       420 km~~~~---------------~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls  484 (720)
                      .+....               +..|+..|+..          ...+.++.+++|+|...             .+++++++
T Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~----------~~~~~~v~vi~ttn~~~-------------~ld~~l~r  170 (268)
T 2r62_A          114 AIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF----------GSENAPVIVLAATNRPE-------------ILDPALMR  170 (268)
T ss_dssp             GTTC----------CCCSCSSTTTTTTTTTCS----------SCSCSCCEEEECBSCCT-------------TSCGGGGS
T ss_pred             hhcccccccccCCCchhHHHHHHHHHHHhhCc----------ccCCCCEEEEEecCCch-------------hcCHhHcC
Confidence            997642               12233222210          01234578999999764             47889998


Q ss_pred             --cceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHH
Q psy17703        485 --RFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLES  562 (720)
Q Consensus       485 --RFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~  562 (720)
                        ||+..+.+..|+.++....+..++            +. . +..++..          +........+  .+.|.+..
T Consensus       171 ~~Rf~~~i~i~~p~~~~r~~il~~~~------------~~-~-~~~~~~~----------~~~la~~~~g--~~g~dl~~  224 (268)
T 2r62_A          171 PGRFDRQVLVDKPDFNGRVEILKVHI------------KG-V-KLANDVN----------LQEVAKLTAG--LAGADLAN  224 (268)
T ss_dssp             SSSSCCCCBCCCCCTTTHHHHHHHHT------------SS-S-CCCSSCC----------TTTTTSSSCS--SCHHHHHH
T ss_pred             CCCCCeEEEecCcCHHHHHHHHHHHH------------hc-C-CCCCccC----------HHHHHHHcCC--CCHHHHHH
Confidence              999888888777665443333211            10 1 0000000          0011111122  34599999


Q ss_pred             HHHHHHHHHHHcCCCCCCHHhHHHHHH
Q psy17703        563 LIRLSEAHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       563 lirla~A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      +++-|...|..+....|+.+|+.+|+.
T Consensus       225 l~~~a~~~a~~~~~~~i~~~~~~~a~~  251 (268)
T 2r62_A          225 IINEAALLAGRNNQKEVRQQHLKEAVE  251 (268)
T ss_dssp             HHHHHHHTTSSSCCCSCCHHHHHTSCT
T ss_pred             HHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence            999888888777778999999988754

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.03  E-value=4.7e-09  Score=105.05  Aligned_cols=186  Identities=20%  Similarity=0.173  Sum_probs=107.9

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCc---------------cccccccceeecCc-cccceeeeccee-eec
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKG---------------SSAVGLTAYITKDP-ETRQMVLQTGAL-VLA  408 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~---------------ss~~glta~~~~~~-~~~~~~~~~G~l-~la  408 (720)
                      ..++|+||||+|||++++.+++.+..........               .............. ............ ...
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG  125 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcC
Confidence            4799999999999999999998663211100000               00000000000000 000000000000 112


Q ss_pred             CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703        409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL  488 (720)
Q Consensus       409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl  488 (720)
                      ...+++|||++.++++.+..|+..+++.             +.++.+|.++|...             .+++++++|+ .
T Consensus       126 ~~~vlviDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~t~~~~-------------~~~~~l~~r~-~  178 (250)
T 1njg_A          126 RFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEHVKFLLATTDPQ-------------KLPVTILSRC-L  178 (250)
T ss_dssp             SSEEEEEETGGGSCHHHHHHHHHHHHSC-------------CTTEEEEEEESCGG-------------GSCHHHHTTS-E
T ss_pred             CceEEEEECcccccHHHHHHHHHHHhcC-------------CCceEEEEEeCChH-------------hCCHHHHHHh-h
Confidence            3569999999999999999999998742             34567778777432             4678999997 4


Q ss_pred             EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE  568 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~  568 (720)
                      .+.+.+++.++....+.         .++   . .....+++++.+.+.+..             ..++|.+..+++.+-
T Consensus       179 ~i~l~~l~~~e~~~~l~---------~~~---~-~~~~~~~~~~~~~l~~~~-------------~G~~~~~~~~~~~~~  232 (250)
T 1njg_A          179 QFHLKALDVEQIRHQLE---------HIL---N-EEHIAHEPRALQLLARAA-------------EGSLRDALSLTDQAI  232 (250)
T ss_dssp             EEECCCCCHHHHHHHHH---------HHH---H-HTTCCBCHHHHHHHHHHH-------------TTCHHHHHHHHHHHH
T ss_pred             hccCCCCCHHHHHHHHH---------HHH---H-hcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHH
Confidence            66777776655433322         111   1 124567788777766431             135688888776552


Q ss_pred             HHHHHcCCCCCCHHhHHHHH
Q psy17703        569 AHAKMRYSETVEVQDVDEAW  588 (720)
Q Consensus       569 A~A~l~~~~~V~~~Dv~~Ai  588 (720)
                          ......|+.+|+++|+
T Consensus       233 ----~~~~~~i~~~~v~~~~  248 (250)
T 1njg_A          233 ----ASGDGQVSTQAVSAML  248 (250)
T ss_dssp             ----TTTTSSBCHHHHHHHS
T ss_pred             ----hccCceecHHHHHHHh
Confidence                2234589999999885

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=99.02  E-value=8.8e-09  Score=135.21  Aligned_cols=232  Identities=17%  Similarity=0.213  Sum_probs=137.8

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCcccc--ceeeec--ceeeecC--C--ceeec
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETR--QMVLQT--GALVLAD--S--GVCCI  415 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~--~~~~~~--G~l~lad--~--gI~~I  415 (720)
                      .+.||||+||||||||++++.....++......-.  .....++..+......  +.....  |.+..+.  |  .|+||
T Consensus      1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~in--fS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFi 1380 (3245)
T 3vkg_A         1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLN--FSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFC 1380 (3245)
T ss_dssp             TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEEC--CCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEE
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEE--eeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEe
Confidence            56799999999999999887665555432111000  0001111111110111  111111  6555553  2  38999


Q ss_pred             cccccCChH------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        416 DEFDKMSDT------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       416 DEidkm~~~------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      ||++....+      ..+.|+++||.+.+...+.+....+ .++.++||+||.+++.        ...++++|++||- +
T Consensus      1381 DDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i-~d~~~vaamnPp~~gG--------r~~l~~Rf~r~F~-v 1450 (3245)
T 3vkg_A         1381 DEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKL-DKIQFVGACNPPTDAG--------RVQLTHRFLRHAP-I 1450 (3245)
T ss_dssp             TTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEE-SSEEEEEEECCTTSTT--------CCCCCHHHHTTCC-E
T ss_pred             cccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEe-cCeEEEEEcCCCCCCC--------CccCCHHHHhhce-E
Confidence            999876654      6889999999999888666666666 7899999999986221        1258999999997 4


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCc---chHHHHHHHHHHHHHhhhcC--CCCCCcccCHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPT---LSEEASQRLIQTYVDMRKLG--AGRGRISAYPRQLESLI  564 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~---ls~ea~~~l~~~y~~lr~~~--~~~~~~~~t~R~le~li  564 (720)
                      +.+..|+++....+...     ++..+     ....|.   +.+....+.++.|..++..-  ..+.+...++|.+..++
T Consensus      1451 i~i~~ps~esL~~If~t-----il~~~-----l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~ 1520 (3245)
T 3vkg_A         1451 LLVDFPSTSSLTQIYGT-----FNRAL-----MKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWD 1520 (3245)
T ss_dssp             EECCCCCHHHHHHHHHH-----HHHHH-----TTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHH
T ss_pred             EEeCCCCHHHHHHHHHH-----HHHHH-----HhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHH
Confidence            67777777665544332     11111     112333   34677778888887765532  23456777889888766


Q ss_pred             H-HHHHHH-------------------HHcCCCCCCHHhHHHHHHHHHHHHHH
Q psy17703        565 R-LSEAHA-------------------KMRYSETVEVQDVDEAWRLHREALKQ  597 (720)
Q Consensus       565 r-la~A~A-------------------~l~~~~~V~~~Dv~~Ai~l~~~~l~~  597 (720)
                      + +..+..                   |+-...-|+.+|-..-..++.+.++.
T Consensus      1521 qGll~~~~~~~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~~ 1573 (3245)
T 3vkg_A         1521 RALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALK 1573 (3245)
T ss_dssp             HHHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            5 233211                   11122346667766666665555544

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.00  E-value=3.9e-10  Score=119.12  Aligned_cols=128  Identities=20%  Similarity=0.239  Sum_probs=79.1

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeee---cCCceeeccccccC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVL---ADSGVCCIDEFDKM  421 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~l---ad~gI~~IDEidkm  421 (720)
                      ..++||+||||||||++++++++.+....+. ...+.   +.........  ..  ..+.+..   ...+++||||+|.+
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~-v~~~~---l~~~~~g~~~--~~--~~~~f~~a~~~~p~il~iDEid~l  120 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANECQANFIS-IKGPE---LLTMWFGESE--AN--VREIFDKARQAAPCVLFFDELDSI  120 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHTTCEEEE-ECHHH---HHHHHHTTCT--TH--HHHHHHHHHHTCSEEEEECSTTHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHHhCCCEEE-EEhHH---HHhhhcCchH--HH--HHHHHHHHHhcCCeEEEEEChHHH
Confidence            4689999999999999999999987532221 01000   0000000000  00  0011111   12479999999986


Q ss_pred             ChH--------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--c
Q psy17703        422 SDT--------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--R  485 (720)
Q Consensus       422 ~~~--------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--R  485 (720)
                      ...              .+..|+..|+.-.           -+.++.||||+|...             .+++++++  |
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~-----------~~~~v~vi~atn~~~-------------~ld~al~r~gR  176 (301)
T 3cf0_A          121 AKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNVFIIGATNRPD-------------IIDPAILRPGR  176 (301)
T ss_dssp             HHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-----------TTSSEEEEEEESCGG-------------GSCGGGGSTTS
T ss_pred             hhccCCCcCCcchHHHHHHHHHHHHhhccc-----------CCCCEEEEEecCCcc-------------ccChHHhcCCc
Confidence            543              3566777776311           135689999999654             47899999  9


Q ss_pred             ceeEEEecCCChHHHHHHH
Q psy17703        486 FDLIFLLLDPQSEQFDARL  504 (720)
Q Consensus       486 Fdli~~l~d~~~~~~d~~l  504 (720)
                      |+..+.+..|+.+++...+
T Consensus       177 f~~~i~i~~p~~~~r~~il  195 (301)
T 3cf0_A          177 LDQLIYIPLPDEKSRVAIL  195 (301)
T ss_dssp             SCEEEECCCCCHHHHHHHH
T ss_pred             cceEEecCCcCHHHHHHHH
Confidence            9988888888776654433

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=98.99  E-value=2.8e-10  Score=119.89  Aligned_cols=131  Identities=18%  Similarity=0.185  Sum_probs=69.2

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCc--cccccccceeecCccccceeeeccee-eecCCceeeccccc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKG--SSAVGLTAYITKDPETRQMVLQTGAL-VLADSGVCCIDEFD  419 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~--ss~~glta~~~~~~~~~~~~~~~G~l-~lad~gI~~IDEid  419 (720)
                      ....+||+||||||||++++++++.+....+. ++..  +..+|.+....+     +....+..+ .....+|+||||+|
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~-----~~f~~a~~~~~~~~~~vl~iDEiD  109 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIR-----QRYREAAEIIRKGNMCCLFINDLD  109 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHH-----HHHHHHHHHHTTSSCCCEEEECCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHH-----HHHHHHHHHHhcCCCeEEEEechh
Confidence            34689999999999999999999987543221 1100  000111100000     000000000 01246899999999


Q ss_pred             cCCh-------------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--
Q psy17703        420 KMSD-------------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--  484 (720)
Q Consensus       420 km~~-------------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--  484 (720)
                      ++..             ..+..|++.|+..............-..++.+|+|+|...             .++++|++  
T Consensus       110 ~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-------------~ld~al~R~~  176 (293)
T 3t15_A          110 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-------------TLYAPLIRDG  176 (293)
T ss_dssp             --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-------------C--CHHHHHH
T ss_pred             hhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-------------cCCHHHhCCC
Confidence            8765             2347888998754422111111122345789999999654             58899995  


Q ss_pred             cceeEEEe
Q psy17703        485 RFDLIFLL  492 (720)
Q Consensus       485 RFdli~~l  492 (720)
                      |||.++.+
T Consensus       177 R~d~~i~~  184 (293)
T 3t15_A          177 RMEKFYWA  184 (293)
T ss_dssp             HEEEEEEC
T ss_pred             CCceeEeC
Confidence            99977654

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.99  E-value=7.7e-10  Score=117.73  Aligned_cols=183  Identities=17%  Similarity=0.192  Sum_probs=101.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCc-cccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC-hH
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQ-YTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS-DT  424 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~-~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~-~~  424 (720)
                      .+|+.||||||||++++++++.+...+ +.++..   .+  ....+... ..+. .. .-.....++++|||++.++ .+
T Consensus        50 ~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~---~~--~~~i~~~~-~~~~-~~-~~~~~~~~vliiDEi~~l~~~~  121 (324)
T 3u61_B           50 IILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD---CK--IDFVRGPL-TNFA-SA-ASFDGRQKVIVIDEFDRSGLAE  121 (324)
T ss_dssp             EEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT---CC--HHHHHTHH-HHHH-HB-CCCSSCEEEEEEESCCCGGGHH
T ss_pred             EEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc---cC--HHHHHHHH-HHHH-hh-cccCCCCeEEEEECCcccCcHH
Confidence            456777799999999999998774322 111111   00  00011100 0000 00 0011246799999999999 99


Q ss_pred             HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHHHH
Q psy17703        425 TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARL  504 (720)
Q Consensus       425 ~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~l  504 (720)
                      .++.|+..||+.             +.++.+|+++|+..             .++++|++||. ++.+..|+.++..+.+
T Consensus       122 ~~~~L~~~le~~-------------~~~~~iI~~~n~~~-------------~l~~~l~sR~~-~i~~~~~~~~e~~~il  174 (324)
T 3u61_B          122 SQRHLRSFMEAY-------------SSNCSIIITANNID-------------GIIKPLQSRCR-VITFGQPTDEDKIEMM  174 (324)
T ss_dssp             HHHHHHHHHHHH-------------GGGCEEEEEESSGG-------------GSCTTHHHHSE-EEECCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhC-------------CCCcEEEEEeCCcc-------------ccCHHHHhhCc-EEEeCCCCHHHHHHHH
Confidence            999999999863             24578888999654             48899999996 6788777766544333


Q ss_pred             HhhcchhHHHHHHHHHHhhcCCcchH-HHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHh
Q psy17703        505 ARHLDITVLRDYIAYAQEHLSPTLSE-EASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQD  583 (720)
Q Consensus       505 a~~i~~~~l~~~i~~ar~~~~p~ls~-ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~D  583 (720)
                      ...      .+++......-...+++ ++.+.+....             ....|.+...+..+   +   ....++.++
T Consensus       175 ~~~------~~~l~~~~~~~~~~~~~~~~~~~l~~~~-------------~gd~R~a~~~L~~~---~---~~~~i~~~~  229 (324)
T 3u61_B          175 KQM------IRRLTEICKHEGIAIADMKVVAALVKKN-------------FPDFRKTIGELDSY---S---SKGVLDAGI  229 (324)
T ss_dssp             HHH------HHHHHHHHHHHTCCBSCHHHHHHHHHHT-------------CSCTTHHHHHHHHH---G---GGTCBCC--
T ss_pred             HHH------HHHHHHHHHHcCCCCCcHHHHHHHHHhC-------------CCCHHHHHHHHHHH---h---ccCCCCHHH
Confidence            321      11121111112456777 8887776431             11235554444322   2   234688888


Q ss_pred             HHHHHH
Q psy17703        584 VDEAWR  589 (720)
Q Consensus       584 v~~Ai~  589 (720)
                      +.++..
T Consensus       230 v~~~~~  235 (324)
T 3u61_B          230 LSLVTN  235 (324)
T ss_dssp             ------
T ss_pred             HHHHhC
Confidence            877643

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.98  E-value=8.5e-09  Score=124.09  Aligned_cols=51  Identities=22%  Similarity=0.308  Sum_probs=40.3

Q ss_pred             CCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCC
Q psy17703        661 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANP  713 (720)
Q Consensus       661 d~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p  713 (720)
                      ..++.++||+++++......++..|++..+.-++ |....+ .++.||+++|+
T Consensus       660 ~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~-g~~vd~-~~~iiI~tsn~  710 (854)
T 1qvr_A          660 PYSVILFDEIEKAHPDVFNILLQILDDGRLTDSH-GRTVDF-RNTVIILTSNL  710 (854)
T ss_dssp             SSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSS-SCCEEC-TTEEEEEECCT
T ss_pred             CCeEEEEecccccCHHHHHHHHHHhccCceECCC-CCEecc-CCeEEEEecCc
Confidence            3467899999999999999999999999887433 444443 35779999997

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.97  E-value=8.2e-10  Score=118.58  Aligned_cols=149  Identities=23%  Similarity=0.321  Sum_probs=88.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCcc----ccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQY----TSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~----~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      |+||+||||||||++++++++.+....+    .....+...+.  ...++. .+.+ .+.+....+...+++|||++.|+
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~--~~ir~~-i~~~-~~~~~~~~~~~~viiiDe~~~l~  123 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGI--DVVRNQ-IKDF-ASTRQIFSKGFKLIILDEADAMT  123 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSH--HHHHTH-HHHH-HHBCCSSSCSCEEEEETTGGGSC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccH--HHHHHH-HHHH-HhhcccCCCCceEEEEeCCCCCC
Confidence            6999999999999999999997632110    00000000000  000100 0000 00111112346799999999999


Q ss_pred             hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHH
Q psy17703        423 DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDA  502 (720)
Q Consensus       423 ~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~  502 (720)
                      .+.+++|+.+||+.             +..+.++.++|...             .+.+++.|||. .+.+.+++.++...
T Consensus       124 ~~~~~~L~~~le~~-------------~~~~~~il~~n~~~-------------~i~~~i~sR~~-~~~~~~l~~~~~~~  176 (340)
T 1sxj_C          124 NAAQNALRRVIERY-------------TKNTRFCVLANYAH-------------KLTPALLSQCT-RFRFQPLPQEAIER  176 (340)
T ss_dssp             HHHHHHHHHHHHHT-------------TTTEEEEEEESCGG-------------GSCHHHHTTSE-EEECCCCCHHHHHH
T ss_pred             HHHHHHHHHHHhcC-------------CCCeEEEEEecCcc-------------ccchhHHhhce-eEeccCCCHHHHHH
Confidence            99999999999864             23455666777432             57899999997 67777776655433


Q ss_pred             HHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q psy17703        503 RLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQT  539 (720)
Q Consensus       503 ~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~  539 (720)
                      .+.             ..-+.-...+++++.+.+...
T Consensus       177 ~l~-------------~~~~~~~~~i~~~~~~~i~~~  200 (340)
T 1sxj_C          177 RIA-------------NVLVHEKLKLSPNAEKALIEL  200 (340)
T ss_dssp             HHH-------------HHHHTTTCCBCHHHHHHHHHH
T ss_pred             HHH-------------HHHHHcCCCCCHHHHHHHHHH
Confidence            332             111112345777777766543

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=98.96  E-value=1.3e-09  Score=114.89  Aligned_cols=181  Identities=18%  Similarity=0.242  Sum_probs=106.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC-CC---ccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP-RS---QYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p-r~---~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      -|+||+||||||||++++++++.+. ..   .+.....+...+.  ...++ ....+. ....+..+..++++|||++.+
T Consensus        39 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~-~~~~~~~~~~~vliiDe~~~l  114 (319)
T 2chq_A           39 PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI--DVVRH-KIKEFA-RTAPIGGAPFKIIFLDEADAL  114 (319)
T ss_dssp             CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT--TTSSH-HHHHHH-HSCCSSSCCCEEEEEETGGGS
T ss_pred             CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh--HHHHH-HHHHHH-hcCCCCCCCceEEEEeCCCcC
Confidence            3799999999999999999998651 11   0000000000000  00000 000000 001111234689999999999


Q ss_pred             ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHH
Q psy17703        422 SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFD  501 (720)
Q Consensus       422 ~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d  501 (720)
                      +.+.+++|+..||+             .+.++.+|+++|...             .+.+++.+||. .+.+.+++.++..
T Consensus       115 ~~~~~~~L~~~le~-------------~~~~~~~i~~~~~~~-------------~l~~~l~sr~~-~i~~~~~~~~~~~  167 (319)
T 2chq_A          115 TADAQAALRRTMEM-------------YSKSCRFILSCNYVS-------------RIIEPIQSRCA-VFRFKPVPKEAMK  167 (319)
T ss_dssp             CHHHHHTTGGGTSS-------------SSSSEEEEEEESCGG-------------GSCHHHHTTCE-EEECCCCCHHHHH
T ss_pred             CHHHHHHHHHHHHh-------------cCCCCeEEEEeCChh-------------hcchHHHhhCe-EEEecCCCHHHHH
Confidence            99999999888864             235677888887542             47899999997 7778777765543


Q ss_pred             HHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCH
Q psy17703        502 ARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEV  581 (720)
Q Consensus       502 ~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~  581 (720)
                      ..+.             ..-......+++++.+.+....             ..++|.+..++..+   +..  ...++.
T Consensus       168 ~~l~-------------~~~~~~~~~i~~~~l~~l~~~~-------------~G~~r~~~~~l~~~---~~~--~~~i~~  216 (319)
T 2chq_A          168 KRLL-------------EICEKEGVKITEDGLEALIYIS-------------GGDFRKAINALQGA---AAI--GEVVDA  216 (319)
T ss_dssp             HHHH-------------HHHHTTCCCBCHHHHHHHHHTT-------------TTCHHHHHHHHHHH---HHS--SSCBCH
T ss_pred             HHHH-------------HHHHHcCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHH---HHc--CCCCCH
Confidence            3322             2212234567888887776321             23457666555432   222  356888


Q ss_pred             HhHHHHH
Q psy17703        582 QDVDEAW  588 (720)
Q Consensus       582 ~Dv~~Ai  588 (720)
                      +++..++
T Consensus       217 ~~v~~~~  223 (319)
T 2chq_A          217 DTIYQIT  223 (319)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            8887763

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.94  E-value=1.6e-09  Score=120.67  Aligned_cols=197  Identities=15%  Similarity=0.185  Sum_probs=117.9

Q ss_pred             hhhcCCC-CccEEEEcCCCCHHHHHHHHHHhhCCCC------ccccCCccccccccceeecCccccceeeecceeeec-C
Q psy17703        338 RLQETPA-EINILLCGDPGTSKSQLLSYVYDLVPRS------QYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLA-D  409 (720)
Q Consensus       338 klQE~pg-~i~vLL~G~PGtGKS~ll~~va~~~pr~------~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~la-d  409 (720)
                      .+-+.|+ .-+++|+||||+|||+|++++++.+.+.      .|.+..... ..+... ........+.     -.+. .
T Consensus       122 ~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~-~~~~~~-~~~~~~~~~~-----~~~~~~  194 (440)
T 2z4s_A          122 EVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL-NDLVDS-MKEGKLNEFR-----EKYRKK  194 (440)
T ss_dssp             HHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH-HHHHHH-HHTTCHHHHH-----HHHTTT
T ss_pred             HHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH-HHHHHH-HHcccHHHHH-----HHhcCC
Confidence            3344454 5689999999999999999999866211      111110000 000000 0000000000     0012 4


Q ss_pred             CceeeccccccCCh--HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703        410 SGVCCIDEFDKMSD--TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD  487 (720)
Q Consensus       410 ~gI~~IDEidkm~~--~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd  487 (720)
                      ..+++|||++.+..  ..+..|+..++...    ..|       ...|+++.||.. .         -..+.++|++||.
T Consensus       195 ~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~----~~~-------~~iIitt~~~~~-~---------l~~l~~~L~sR~~  253 (440)
T 2z4s_A          195 VDILLIDDVQFLIGKTGVQTELFHTFNELH----DSG-------KQIVICSDREPQ-K---------LSEFQDRLVSRFQ  253 (440)
T ss_dssp             CSEEEEECGGGGSSCHHHHHHHHHHHHHHH----TTT-------CEEEEEESSCGG-G---------CSSCCHHHHHHHH
T ss_pred             CCEEEEeCcccccCChHHHHHHHHHHHHHH----HCC-------CeEEEEECCCHH-H---------HHHHHHHHHhhcc
Confidence            67999999999986  67778888876421    111       133444444332 1         1137899999997


Q ss_pred             --eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703        488 --LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR  565 (720)
Q Consensus       488 --li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir  565 (720)
                        +++.+.+|+.++....+.         ++..   . ....+++++.+.|....             +.++|.++.+++
T Consensus       254 ~g~~i~l~~p~~e~r~~iL~---------~~~~---~-~~~~i~~e~l~~la~~~-------------~gn~R~l~~~L~  307 (440)
T 2z4s_A          254 MGLVAKLEPPDEETRKSIAR---------KMLE---I-EHGELPEEVLNFVAENV-------------DDNLRRLRGAII  307 (440)
T ss_dssp             SSBCCBCCCCCHHHHHHHHH---------HHHH---H-HTCCCCTTHHHHHHHHC-------------CSCHHHHHHHHH
T ss_pred             CCeEEEeCCCCHHHHHHHHH---------HHHH---H-cCCCCCHHHHHHHHHhc-------------CCCHHHHHHHHH
Confidence              778888877665543333         2211   1 23457788877776431             245799999999


Q ss_pred             HHHHHHHHcCCCCCCHHhHHHHHH
Q psy17703        566 LSEAHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       566 la~A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      .+.+.|...++ .|+.+++.+|+.
T Consensus       308 ~~~~~a~~~~~-~It~~~~~~~l~  330 (440)
T 2z4s_A          308 KLLVYKETTGK-EVDLKEAILLLK  330 (440)
T ss_dssp             HHHHHHHHSSS-CCCHHHHHHHTS
T ss_pred             HHHHHHHHhCC-CCCHHHHHHHHH
Confidence            99999988765 699999998865

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=98.94  E-value=1.4e-09  Score=117.87  Aligned_cols=142  Identities=15%  Similarity=0.092  Sum_probs=93.6

Q ss_pred             eeeccccccCChH--HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee-
Q psy17703        412 VCCIDEFDKMSDT--TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL-  488 (720)
Q Consensus       412 I~~IDEidkm~~~--~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl-  488 (720)
                      +++|||++.+...  .+..|..+++.....        ..+.++.+|+++|...-.          ..+.+++.+||.. 
T Consensus       133 vlilDEi~~l~~~~~~~~~l~~l~~~~~~~--------~~~~~~~~I~~t~~~~~~----------~~l~~~l~~r~~~~  194 (387)
T 2v1u_A          133 IIVLDEIDFLPKRPGGQDLLYRITRINQEL--------GDRVWVSLVGITNSLGFV----------ENLEPRVKSSLGEV  194 (387)
T ss_dssp             EEEEETTTHHHHSTTHHHHHHHHHHGGGCC-------------CEEEEECSCSTTS----------SSSCHHHHTTTTSE
T ss_pred             EEEEccHhhhcccCCCChHHHhHhhchhhc--------CCCceEEEEEEECCCchH----------hhhCHHHHhcCCCe
Confidence            8999999999876  677777776532100        014567889999865310          1478999999975 


Q ss_pred             EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE  568 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~  568 (720)
                      .+.+.++..++....+.         .++..+  .....+++++.+.+.++..          ..+..+|.+..+++.+.
T Consensus       195 ~i~l~~l~~~~~~~il~---------~~~~~~--~~~~~~~~~~~~~l~~~~~----------~~~G~~r~~~~~l~~a~  253 (387)
T 2v1u_A          195 ELVFPPYTAPQLRDILE---------TRAEEA--FNPGVLDPDVVPLCAALAA----------REHGDARRALDLLRVAG  253 (387)
T ss_dssp             ECCBCCCCHHHHHHHHH---------HHHHHH--BCTTTBCSSHHHHHHHHHH----------SSSCCHHHHHHHHHHHH
T ss_pred             EEeeCCCCHHHHHHHHH---------HHHHhh--ccCCCCCHHHHHHHHHHHH----------HhccCHHHHHHHHHHHH
Confidence            66677666555443333         222211  1134677788777765542          11345799999999998


Q ss_pred             HHHHHcCCCCCCHHhHHHHHHHHH
Q psy17703        569 AHAKMRYSETVEVQDVDEAWRLHR  592 (720)
Q Consensus       569 A~A~l~~~~~V~~~Dv~~Ai~l~~  592 (720)
                      ..|..+.+..|+.+|+..|+.-..
T Consensus       254 ~~a~~~~~~~i~~~~v~~a~~~~~  277 (387)
T 2v1u_A          254 EIAERRREERVRREHVYSARAEIE  277 (387)
T ss_dssp             HHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCcCHHHHHHHHHHHh
Confidence            888888889999999999987543

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.93  E-value=1.2e-09  Score=112.22  Aligned_cols=181  Identities=24%  Similarity=0.247  Sum_probs=102.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccccceeecCccccceeeecce-eeec---CCceeeccccccC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLTAYITKDPETRQMVLQTGA-LVLA---DSGVCCIDEFDKM  421 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glta~~~~~~~~~~~~~~~G~-l~la---d~gI~~IDEidkm  421 (720)
                      +++|+||||||||+|++++++.+....+ ..+.  .....        ..+.....-+. +..+   ...++++||++.+
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~--~~~~~--------~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l  120 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGEARVPFITASGS--DFVEM--------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAV  120 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH--HHHHS--------CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHH--HHHHH--------HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhh
Confidence            3999999999999999999998753221 1110  00000        00000000000 0011   2368999999865


Q ss_pred             Ch-----------HH---HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--c
Q psy17703        422 SD-----------TT---RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--R  485 (720)
Q Consensus       422 ~~-----------~~---~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--R  485 (720)
                      ..           ..   ...++..|+.+.           ......++|++|...             .+++++++  |
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~-----------~~~~~i~~a~t~~p~-------------~ld~~l~r~~r  176 (254)
T 1ixz_A          121 GRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATNRPD-------------ILDPALLRPGR  176 (254)
T ss_dssp             HC---------CHHHHHHHHHHHHHHHTCC-----------TTCCEEEEEEESCGG-------------GSCGGGGSTTS
T ss_pred             hcccCccccccchHHHHHHHHHHHHHhCCC-----------CCCCEEEEEccCCch-------------hCCHHHcCCCc
Confidence            32           11   223333333211           122356788888553             37899998  9


Q ss_pred             ceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHH-HHHHHHHHHHhhhcCCCCCCcccCHHHHHHHH
Q psy17703        486 FDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEA-SQRLIQTYVDMRKLGAGRGRISAYPRQLESLI  564 (720)
Q Consensus       486 Fdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea-~~~l~~~y~~lr~~~~~~~~~~~t~R~le~li  564 (720)
                      ||..+.+..|+.+++.+.+..+            ++. .  .+++++ ...+..     +.       -..+.|.++.++
T Consensus       177 f~~~i~i~~p~~~~r~~il~~~------------~~~-~--~~~~~~~~~~la~-----~~-------~G~~~~dl~~~~  229 (254)
T 1ixz_A          177 FDRQIAIDAPDVKGREQILRIH------------ARG-K--PLAEDVDLALLAK-----RT-------PGFVGADLENLL  229 (254)
T ss_dssp             SCEEEECCSCCHHHHHHHHHHH------------HTT-S--CBCTTCCHHHHHH-----TC-------TTCCHHHHHHHH
T ss_pred             CCeEEeeCCcCHHHHHHHHHHH------------HcC-C--CCCcccCHHHHHH-----Hc-------CCCCHHHHHHHH
Confidence            9999898888776654443321            111 1  122222 222221     10       113459999999


Q ss_pred             HHHHHHHHHcCCCCCCHHhHHHHH
Q psy17703        565 RLSEAHAKMRYSETVEVQDVDEAW  588 (720)
Q Consensus       565 rla~A~A~l~~~~~V~~~Dv~~Ai  588 (720)
                      +-|...|..+.+..|+.+|+++|+
T Consensus       230 ~~a~~~a~~~~~~~I~~~dl~~a~  253 (254)
T 1ixz_A          230 NEAALLAAREGRRKITMKDLEEAA  253 (254)
T ss_dssp             HHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCcCHHHHHHHh
Confidence            988888888778889999999884

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.89  E-value=2.2e-09  Score=111.80  Aligned_cols=188  Identities=25%  Similarity=0.311  Sum_probs=103.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC---
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS---  422 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~---  422 (720)
                      +++|+||||||||+|+++++..+....+. .+.  ............ ..+ ..++. + ......++++||++.+.   
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~--~~~~~~~~~~~~-~i~-~~~~~-~-~~~~~~i~~iDeid~l~~~~  148 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEARVPFITASGS--DFVEMFVGVGAA-RVR-DLFET-A-KRHAPCIVFIDEIDAVGRKR  148 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH--HHHHSTTTHHHH-HHH-HHHHH-H-HTSCSEEEEEETHHHHHCC-
T ss_pred             eEEEECCCcChHHHHHHHHHHHcCCCEEEecHH--HHHHHHhhHHHH-HHH-HHHHH-H-HhcCCcEEehhhhHhhhccc
Confidence            49999999999999999999987532211 110  000000000000 000 00000 0 00124689999998652   


Q ss_pred             --------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeEEEe
Q psy17703        423 --------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLIFLL  492 (720)
Q Consensus       423 --------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli~~l  492 (720)
                              ...+..+.+.+.+    +  .|..  ......++|++|...             .+++++++  ||+..+.+
T Consensus       149 ~~~~~~~~~~~~~~~~~ll~~----l--sgg~--~~~~~i~~a~t~~p~-------------~ld~~l~r~~rf~~~i~i  207 (278)
T 1iy2_A          149 GSGVGGGNDEREQTLNQLLVE----M--DGFE--KDTAIVVMAATNRPD-------------ILDPALLRPGRFDRQIAI  207 (278)
T ss_dssp             -------CHHHHHHHHHHHHH----H--TTCC--TTCCEEEEEEESCTT-------------SSCHHHHSTTSSCCEEEC
T ss_pred             ccccCCcchHHHHHHHHHHHH----H--hCCC--CCCCEEEEEecCCch-------------hCCHhHcCCCcCCeEEEe
Confidence                    1222333333321    0  1110  122366788888653             47899998  99998888


Q ss_pred             cCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHH-HHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHH
Q psy17703        493 LDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEA-SQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHA  571 (720)
Q Consensus       493 ~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea-~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A  571 (720)
                      ..|+.+++.+.+..+            ++.   ..+++++ ...+..     +.       -..+.|+|+.+++-|...|
T Consensus       208 ~~p~~~~r~~il~~~------------~~~---~~~~~~~~~~~la~-----~~-------~G~~~~dl~~l~~~a~~~a  260 (278)
T 1iy2_A          208 DAPDVKGREQILRIH------------ARG---KPLAEDVDLALLAK-----RT-------PGFVGADLENLLNEAALLA  260 (278)
T ss_dssp             CCCCHHHHHHHHHHH------------HTT---SCBCTTCCHHHHHH-----TC-------TTCCHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHH------------Hcc---CCCCcccCHHHHHH-----Hc-------CCCCHHHHHHHHHHHHHHH
Confidence            888766654443321            111   1222222 222211     10       1124599999999888888


Q ss_pred             HHcCCCCCCHHhHHHHH
Q psy17703        572 KMRYSETVEVQDVDEAW  588 (720)
Q Consensus       572 ~l~~~~~V~~~Dv~~Ai  588 (720)
                      ..+.+..|+.+|+++|+
T Consensus       261 ~~~~~~~I~~~dl~~a~  277 (278)
T 1iy2_A          261 AREGRRKITMKDLEEAA  277 (278)
T ss_dssp             HHTTCCSBCHHHHHHHT
T ss_pred             HHhCCCCcCHHHHHHHh
Confidence            88778899999999885

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=98.84  E-value=5.8e-08  Score=104.81  Aligned_cols=185  Identities=22%  Similarity=0.187  Sum_probs=106.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCccccCCc---------------ccccccccee-ecCccccceeeeccee-eecC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKG---------------SSAVGLTAYI-TKDPETRQMVLQTGAL-VLAD  409 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~---------------ss~~glta~~-~~~~~~~~~~~~~G~l-~lad  409 (720)
                      .+||+||||||||++++++++.+..........               .....+.+.. ..........-..... ....
T Consensus        40 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  119 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR  119 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCC
Confidence            579999999999999999998664321110000               0000000000 0000000000000000 1123


Q ss_pred             CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      ..+++|||++.|+.+.++.|+..+|+             .+.++.+|.++|...             .+++++.+|+ ..
T Consensus       120 ~~vliiDe~~~l~~~~~~~Ll~~le~-------------~~~~~~~Il~~~~~~-------------~l~~~l~sr~-~~  172 (373)
T 1jr3_A          120 FKVYLIDEVHMLSRHSFNALLKTLEE-------------PPEHVKFLLATTDPQ-------------KLPVTILSRC-LQ  172 (373)
T ss_dssp             SEEEEEECGGGSCHHHHHHHHHHHHS-------------CCSSEEEEEEESCGG-------------GSCHHHHTTS-EE
T ss_pred             eEEEEEECcchhcHHHHHHHHHHHhc-------------CCCceEEEEEeCChH-------------hCcHHHHhhe-eE
Confidence            56999999999999999999999975             244566777776321             4788999999 47


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA  569 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A  569 (720)
                      +.+..++.++....+.         .+.   + .....+++++.+.+.+..             ..++|.+..++.-+..
T Consensus       173 i~~~~l~~~~~~~~l~---------~~~---~-~~~~~~~~~a~~~l~~~~-------------~G~~r~~~~~l~~~~~  226 (373)
T 1jr3_A          173 FHLKALDVEQIRHQLE---------HIL---N-EEHIAHEPRALQLLARAA-------------EGSLRDALSLTDQAIA  226 (373)
T ss_dssp             EECCCCCHHHHHHHHH---------HHH---H-HHTCCBCHHHHHHHHHHS-------------SSCHHHHHHHHHHHHH
T ss_pred             eeCCCCCHHHHHHHHH---------HHH---H-HcCCCCCHHHHHHHHHHC-------------CCCHHHHHHHHHHHHH
Confidence            7777776655433322         111   1 123457788877766431             2346877777654422


Q ss_pred             HHHHcCCCCCCHHhHHHHH
Q psy17703        570 HAKMRYSETVEVQDVDEAW  588 (720)
Q Consensus       570 ~A~l~~~~~V~~~Dv~~Ai  588 (720)
                      .    ....++.+|+.+++
T Consensus       227 ~----~~~~i~~~~v~~~~  241 (373)
T 1jr3_A          227 S----GDGQVSTQAVSAML  241 (373)
T ss_dssp             H----TTTCBCHHHHHHHT
T ss_pred             h----cCCcccHHHHHHHh
Confidence            2    24678999988764

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.83  E-value=7.5e-10  Score=114.95  Aligned_cols=173  Identities=13%  Similarity=0.195  Sum_probs=92.9

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccC--
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM--  421 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm--  421 (720)
                      ...++||+||||||||++++++++.+....+.-.......|........ .... .++  .......++++|||++.+  
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~-~~~~-~~~--~~~~~~~~vl~iDEid~l~~  138 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQ-AMKK-IFD--DAYKSQLSCVVVDDIERLLD  138 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHH-HHHH-HHH--HHHTSSEEEEEECCHHHHTT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHH-HHHH-HHH--HHHhcCCcEEEEEChhhhhc
Confidence            3569999999999999999999997543211100000011110000000 0000 000  001134689999999987  


Q ss_pred             --------ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCCh-hhhccceeEEEe
Q psy17703        422 --------SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPH-TLLSRFDLIFLL  492 (720)
Q Consensus       422 --------~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~-aLlsRFdli~~l  492 (720)
                              ....+..|.+.++..          ...+.++.+++|+|+..             .+++ .+.+||+..+.+
T Consensus       139 ~~~~~~~~~~~~l~~L~~~~~~~----------~~~~~~~~ii~ttn~~~-------------~l~~~~l~~rf~~~i~~  195 (272)
T 1d2n_A          139 YVPIGPRFSNLVLQALLVLLKKA----------PPQGRKLLIIGTTSRKD-------------VLQEMEMLNAFSTTIHV  195 (272)
T ss_dssp             CBTTTTBCCHHHHHHHHHHTTCC----------CSTTCEEEEEEEESCHH-------------HHHHTTCTTTSSEEEEC
T ss_pred             cCCCChhHHHHHHHHHHHHhcCc----------cCCCCCEEEEEecCChh-------------hcchhhhhcccceEEcC
Confidence                    333344444444311          11234678999999653             2334 678999988888


Q ss_pred             cCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703        493 LDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE  568 (720)
Q Consensus       493 ~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~  568 (720)
                      ++..+.+.            +..++..     ...+++++.+.+.....     +   -+++...|++..+++.+.
T Consensus       196 p~l~~r~~------------i~~i~~~-----~~~~~~~~~~~l~~~~~-----g---~~~~g~ir~l~~~l~~a~  246 (272)
T 1d2n_A          196 PNIATGEQ------------LLEALEL-----LGNFKDKERTTIAQQVK-----G---KKVWIGIKKLLMLIEMSL  246 (272)
T ss_dssp             CCEEEHHH------------HHHHHHH-----HTCSCHHHHHHHHHHHT-----T---SEEEECHHHHHHHHHHHT
T ss_pred             CCccHHHH------------HHHHHHh-----cCCCCHHHHHHHHHHhc-----C---CCccccHHHHHHHHHHHh
Confidence            76655321            1122211     12456777666654321     1   124556788888777663

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.83  E-value=3.2e-08  Score=129.31  Aligned_cols=191  Identities=16%  Similarity=0.165  Sum_probs=129.8

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccc--cCCccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYT--SGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~--~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      -..++++.||||||||.+++++|+.+.+..+.  +..+.+...+          +..  -.|+  ...|.++|+|||+++
T Consensus       644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~l----------g~~--~~g~--~~~Gaw~~~DE~nr~  709 (2695)
T 4akg_A          644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVL----------SRL--LVGI--TQIGAWGCFDEFNRL  709 (2695)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHH----------HHH--HHHH--HHHTCEEEEETTTSS
T ss_pred             hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHh----------hHH--HHHH--HhcCCEeeehhhhhc
Confidence            35689999999999999999999998775432  1112111111          000  0111  123678999999999


Q ss_pred             ChHHHHHH-------HHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecC
Q psy17703        422 SDTTRSIL-------HEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLD  494 (720)
Q Consensus       422 ~~~~~~~L-------~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d  494 (720)
                      +++.++++       +++|.++..++.-.|....++..|.+++|+||.+.   +      ...||++|.+||- -+.+..
T Consensus       710 ~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~---g------~~eLP~~Lk~~Fr-~v~m~~  779 (2695)
T 4akg_A          710 DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYN---G------RSELPENLKKSFR-EFSMKS  779 (2695)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSS---S------SCCCCHHHHTTEE-EEECCC
T ss_pred             ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCcc---C------cccccHHHHhheE-EEEeeC
Confidence            99998877       77787777666668889999999999999999432   2      2369999999995 444544


Q ss_pred             CChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHc
Q psy17703        495 PQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMR  574 (720)
Q Consensus       495 ~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~  574 (720)
                      |+.+..             .+.+.++.   .+.........++..|..+|..-+...+.....|.+.++++.|....+-.
T Consensus       780 Pd~~~i-------------~ei~l~s~---Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lkr~~  843 (2695)
T 4akg_A          780 PQSGTI-------------AEMILQIM---GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEF  843 (2695)
T ss_dssp             CCHHHH-------------HHHHHHHH---HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHH-------------HHHHHHhc---CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhhccC
Confidence            443322             11112222   23445667778888888877755555566667799999999876655443

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.82  E-value=2.4e-08  Score=105.31  Aligned_cols=182  Identities=16%  Similarity=0.170  Sum_probs=105.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCC----ccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRS----QYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~----~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      |+||+||||+|||++++.+++.+...    .+.....+...+.  ...++.. ..+......+......+++|||++.++
T Consensus        44 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~i~~~~-~~~~~~~~~~~~~~~~viiiDe~~~l~  120 (323)
T 1sxj_B           44 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGI--DVVRNQI-KHFAQKKLHLPPGKHKIVILDEADSMT  120 (323)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSH--HHHHTHH-HHHHHBCCCCCTTCCEEEEEESGGGSC
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccCh--HHHHHHH-HHHHhccccCCCCCceEEEEECcccCC
Confidence            59999999999999999999865210    0111011110000  0000000 000000000001235699999999999


Q ss_pred             hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHH
Q psy17703        423 DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDA  502 (720)
Q Consensus       423 ~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~  502 (720)
                      .+.+++|+..+|+.             +..+.+|.++|+..             .+++++.+|+. .+.+.+++.++...
T Consensus       121 ~~~~~~L~~~le~~-------------~~~~~~il~~~~~~-------------~l~~~l~sr~~-~i~~~~~~~~~~~~  173 (323)
T 1sxj_B          121 AGAQQALRRTMELY-------------SNSTRFAFACNQSN-------------KIIEPLQSQCA-ILRYSKLSDEDVLK  173 (323)
T ss_dssp             HHHHHTTHHHHHHT-------------TTTEEEEEEESCGG-------------GSCHHHHTTSE-EEECCCCCHHHHHH
T ss_pred             HHHHHHHHHHHhcc-------------CCCceEEEEeCChh-------------hchhHHHhhce-EEeecCCCHHHHHH
Confidence            99999999999863             24466777777532             47899999997 77787777665443


Q ss_pred             HHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHH
Q psy17703        503 RLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQ  582 (720)
Q Consensus       503 ~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~  582 (720)
                      .+..         +   ++. ....+++++.+.+.+..             ..++|.+..++.-...   .  ...++.+
T Consensus       174 ~l~~---------~---~~~-~~~~~~~~~~~~l~~~~-------------~G~~r~a~~~l~~~~~---~--~~~i~~~  222 (323)
T 1sxj_B          174 RLLQ---------I---IKL-EDVKYTNDGLEAIIFTA-------------EGDMRQAINNLQSTVA---G--HGLVNAD  222 (323)
T ss_dssp             HHHH---------H---HHH-HTCCBCHHHHHHHHHHH-------------TTCHHHHHHHHHHHHH---H--HSSBCHH
T ss_pred             HHHH---------H---HHH-cCCCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHHh---c--CCCcCHH
Confidence            3331         1   111 23457788877776542             1235766665543321   1  1468888


Q ss_pred             hHHHHHH
Q psy17703        583 DVDEAWR  589 (720)
Q Consensus       583 Dv~~Ai~  589 (720)
                      ++.+++.
T Consensus       223 ~v~~~~~  229 (323)
T 1sxj_B          223 NVFKIVD  229 (323)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHC
Confidence            8877754

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.79  E-value=2.4e-07  Score=99.42  Aligned_cols=91  Identities=13%  Similarity=0.230  Sum_probs=62.4

Q ss_pred             CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703        409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL  488 (720)
Q Consensus       409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl  488 (720)
                      +..+++|||++.|+.+.+++|+..|++.             +.++.+|.++|...             .+++++.||| .
T Consensus       134 ~~~vlilDE~~~L~~~~~~~L~~~le~~-------------~~~~~~Il~t~~~~-------------~l~~~l~sR~-~  186 (354)
T 1sxj_E          134 RYKCVIINEANSLTKDAQAALRRTMEKY-------------SKNIRLIMVCDSMS-------------PIIAPIKSQC-L  186 (354)
T ss_dssp             CCEEEEEECTTSSCHHHHHHHHHHHHHS-------------TTTEEEEEEESCSC-------------SSCHHHHTTS-E
T ss_pred             CCeEEEEeCccccCHHHHHHHHHHHHhh-------------cCCCEEEEEeCCHH-------------HHHHHHHhhc-e
Confidence            4559999999999999999999999863             23456666666432             3789999999 6


Q ss_pred             EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcch-HHHHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLS-EEASQRLIQT  539 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls-~ea~~~l~~~  539 (720)
                      .+.+.+++.++....+..             ........++ +++.+.+...
T Consensus       187 ~~~~~~~~~~~~~~~l~~-------------~~~~~~~~~~~~~~l~~i~~~  225 (354)
T 1sxj_E          187 LIRCPAPSDSEISTILSD-------------VVTNERIQLETKDILKRIAQA  225 (354)
T ss_dssp             EEECCCCCHHHHHHHHHH-------------HHHHHTCEECCSHHHHHHHHH
T ss_pred             EEecCCcCHHHHHHHHHH-------------HHHHcCCCCCcHHHHHHHHHH
Confidence            788888876654433331             1111234566 7777777643

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.78  E-value=1.2e-08  Score=110.73  Aligned_cols=134  Identities=17%  Similarity=0.209  Sum_probs=88.9

Q ss_pred             eeeccccccCChHH-HHH-HHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        412 VCCIDEFDKMSDTT-RSI-LHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       412 I~~IDEidkm~~~~-~~~-L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      +++|||++.+.... +.. +...++..              .++.+|+++|...-          ...+.+++++||...
T Consensus       136 vlilDEi~~l~~~~~~~~~l~~l~~~~--------------~~~~iI~~t~~~~~----------~~~l~~~l~sr~~~~  191 (384)
T 2qby_B          136 IIYLDEVDTLVKRRGGDIVLYQLLRSD--------------ANISVIMISNDINV----------RDYMEPRVLSSLGPS  191 (384)
T ss_dssp             EEEEETTHHHHHSTTSHHHHHHHHTSS--------------SCEEEEEECSSTTT----------TTTSCHHHHHTCCCE
T ss_pred             EEEEECHHHhccCCCCceeHHHHhcCC--------------cceEEEEEECCCch----------HhhhCHHHHhcCCCe
Confidence            99999999987642 455 55554321              56788999986531          014789999999878


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEA  569 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A  569 (720)
                      +.+.++..++....+..         ++..  ..-...+++++.+.+.+...          ..+..+|.+..+++.+..
T Consensus       192 i~l~~l~~~~~~~il~~---------~~~~--~~~~~~~~~~~~~~i~~~~~----------~~~G~~r~a~~~l~~a~~  250 (384)
T 2qby_B          192 VIFKPYDAEQLKFILSK---------YAEY--GLIKGTYDDEILSYIAAISA----------KEHGDARKAVNLLFRAAQ  250 (384)
T ss_dssp             EEECCCCHHHHHHHHHH---------HHHH--TSCTTSCCSHHHHHHHHHHH----------TTCCCHHHHHHHHHHHHH
T ss_pred             EEECCCCHHHHHHHHHH---------HHHh--hcccCCcCHHHHHHHHHHHH----------hccCCHHHHHHHHHHHHH
Confidence            88888776654433332         2211  11124678888887776542          123457988888888877


Q ss_pred             HHHHcCCCCCCHHhHHHHHHHHH
Q psy17703        570 HAKMRYSETVEVQDVDEAWRLHR  592 (720)
Q Consensus       570 ~A~l~~~~~V~~~Dv~~Ai~l~~  592 (720)
                      .|.  ....|+.+|+..|+.-..
T Consensus       251 ~a~--~~~~i~~~~v~~~~~~~~  271 (384)
T 2qby_B          251 LAS--GGGIIRKEHVDKAIVDYE  271 (384)
T ss_dssp             HTT--SSSCCCHHHHHHHHHHHH
T ss_pred             Hhc--CCCccCHHHHHHHHHHHh
Confidence            765  567899999999987543

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=98.78  E-value=3.2e-08  Score=110.98  Aligned_cols=186  Identities=14%  Similarity=0.141  Sum_probs=100.7

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCccccccccceeecCccccceeeecc----eeeecCCceeecccc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGSSAVGLTAYITKDPETRQMVLQTG----ALVLADSGVCCIDEF  418 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~ss~~glta~~~~~~~~~~~~~~~G----~l~lad~gI~~IDEi  418 (720)
                      ..-|+||+||||||||+++++++..+.+.... ...+...+.+..+   ....|++.....    .+..+.++|+|||  
T Consensus       200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD--  274 (468)
T 3pxg_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID--  274 (468)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC--
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe--
Confidence            45699999999999999999999976332111 0011111111111   011111111000    1111347899999  


Q ss_pred             ccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChH
Q psy17703        419 DKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSE  498 (720)
Q Consensus       419 dkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~  498 (720)
                        ...+.++.|+.+|+.+               ++.+|+|+|+...+        ..+.++++|++||. .+.+..|+.+
T Consensus       275 --~~~~a~~~L~~~L~~g---------------~v~vI~at~~~e~~--------~~~~~~~al~~Rf~-~i~v~~p~~e  328 (468)
T 3pxg_A          275 --AAIDASNILKPSLARG---------------ELQCIGATTLDEYR--------KYIEKDAALERRFQ-PIQVDQPSVD  328 (468)
T ss_dssp             --C--------CCCTTSS---------------SCEEEEECCTTTTH--------HHHTTCSHHHHSEE-EEECCCCCHH
T ss_pred             --CchhHHHHHHHhhcCC---------------CEEEEecCCHHHHH--------HHhhcCHHHHHhCc-cceeCCCCHH
Confidence              4555666677766533               46789999976421        22458899999998 4777777766


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCC
Q psy17703        499 QFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYS  576 (720)
Q Consensus       499 ~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~  576 (720)
                      +....+.....         .........+++++...+..+....    ...   ...|+....+++-+.+.++++..
T Consensus       329 ~~~~iL~~~~~---------~~~~~~~~~i~~~al~~l~~~s~~~----~~~---~~lp~~ai~ll~~a~~~~~~~~~  390 (468)
T 3pxg_A          329 ESIQILQGLRD---------RYEAHHRVSITDDAIEAAVKLSDRY----ISD---RFLPDKAIDLIDEAGSKVRLRSF  390 (468)
T ss_dssp             HHHHHHHHTTT---------TSGGGSSCSCCHHHHHHHHHHHHHS----SCC---SCTTHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHH---------HHHHhcCCCCCHHHHHHHHHHHHHH----hcc---CcCCcHHHHHHHHHHHHHHhccC
Confidence            65444442211         1011234568888888877554221    111   12357788888888888887754

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.77  E-value=1.1e-08  Score=109.02  Aligned_cols=189  Identities=15%  Similarity=0.194  Sum_probs=102.7

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCC----CccccCCccccccccceeecCccccceeeecceeeecCCceeecccccc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPR----SQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK  420 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr----~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk  420 (720)
                      .-+++|+||||||||++++++++.+.+    ..|.+.... ...+....... ....+.   .  .....++++|||++.
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~-~~~~~~---~--~~~~~~vL~iDEi~~  109 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF-AQAMVEHLKKG-TINEFR---N--MYKSVDLLLLDDVQF  109 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH-HHHHHHHHHHT-CHHHHH---H--HHHTCSEEEEECGGG
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH-HHHHHHHHHcC-cHHHHH---H--HhcCCCEEEEcCccc
Confidence            468999999999999999999987632    111111000 00000000000 000000   0  023468999999999


Q ss_pred             CCh--HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCCC
Q psy17703        421 MSD--TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDPQ  496 (720)
Q Consensus       421 m~~--~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~~  496 (720)
                      ++.  ..+..++..++...    ..|       ...|+++.|+..          +-..++++|++||+  +++.+.+ +
T Consensus       110 l~~~~~~~~~l~~~l~~~~----~~~-------~~iii~~~~~~~----------~l~~l~~~L~sR~~~~~~i~l~~-~  167 (324)
T 1l8q_A          110 LSGKERTQIEFFHIFNTLY----LLE-------KQIILASDRHPQ----------KLDGVSDRLVSRFEGGILVEIEL-D  167 (324)
T ss_dssp             GTTCHHHHHHHHHHHHHHH----HTT-------CEEEEEESSCGG----------GCTTSCHHHHHHHHTSEEEECCC-C
T ss_pred             ccCChHHHHHHHHHHHHHH----HCC-------CeEEEEecCChH----------HHHHhhhHhhhcccCceEEEeCC-C
Confidence            986  56777777765321    011       123455544432          11147899999997  6777777 5


Q ss_pred             hHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHH--H--
Q psy17703        497 SEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHA--K--  572 (720)
Q Consensus       497 ~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A--~--  572 (720)
                      .++....+.         .++   + .....+++++.+.+..+.              .+.|.++.++..+.+..  .  
T Consensus       168 ~~e~~~il~---------~~~---~-~~~~~l~~~~l~~l~~~~--------------g~~r~l~~~l~~~~~~~~~~l~  220 (324)
T 1l8q_A          168 NKTRFKIIK---------EKL---K-EFNLELRKEVIDYLLENT--------------KNVREIEGKIKLIKLKGFEGLE  220 (324)
T ss_dssp             HHHHHHHHH---------HHH---H-HTTCCCCHHHHHHHHHHC--------------SSHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHH---------HHH---H-hcCCCCCHHHHHHHHHhC--------------CCHHHHHHHHHHHHHcCHHHhc
Confidence            554433322         211   1 134578888888876542              13488888776554440  0  


Q ss_pred             HcCCCCC-CHHhHHHHHH
Q psy17703        573 MRYSETV-EVQDVDEAWR  589 (720)
Q Consensus       573 l~~~~~V-~~~Dv~~Ai~  589 (720)
                      +.....+ +.+++.+++.
T Consensus       221 ~~~~~~i~t~~~i~~~~~  238 (324)
T 1l8q_A          221 RKERKERDKLMQIVEFVA  238 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCCHHHHHHHHH
Confidence            1112245 6666666654

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.76  E-value=3.5e-08  Score=106.93  Aligned_cols=210  Identities=13%  Similarity=0.091  Sum_probs=120.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCC-----ccccCCccc-cccccceee---cC--cccc----ceeeecceeeecCC-
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRS-----QYTSGKGSS-AVGLTAYIT---KD--PETR----QMVLQTGALVLADS-  410 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~-----~~~~g~~ss-~~glta~~~---~~--~~~~----~~~~~~G~l~lad~-  410 (720)
                      +++|+||||+|||++++.+++.+...     ++..+.... ...+.....   ..  +..+    ...-.........+ 
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~  125 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL  125 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence            89999999999999999999877432     111111100 000000000   00  0000    00000000001123 


Q ss_pred             -ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee-
Q psy17703        411 -GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL-  488 (720)
Q Consensus       411 -gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl-  488 (720)
                       -+++|||++.++.+.+..|..++++..    ..     ...++.+|+++|...        +.+  .+.+++.+||.. 
T Consensus       126 ~~vlilDE~~~l~~~~~~~L~~~~~~~~----~~-----~~~~~~iI~~~~~~~--------~~~--~l~~~~~~r~~~~  186 (389)
T 1fnn_A          126 YMFLVLDDAFNLAPDILSTFIRLGQEAD----KL-----GAFRIALVIVGHNDA--------VLN--NLDPSTRGIMGKY  186 (389)
T ss_dssp             CEEEEEETGGGSCHHHHHHHHHHTTCHH----HH-----SSCCEEEEEEESSTH--------HHH--TSCHHHHHHHTTC
T ss_pred             eEEEEEECccccchHHHHHHHHHHHhCC----CC-----CcCCEEEEEEECCch--------HHH--HhCHHhhhcCCCc
Confidence             389999999999888888888875421    00     013577888887431        111  367889999985 


Q ss_pred             EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE  568 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~  568 (720)
                      .+.+.+++.++....+.         .++..+.  ....+++++.+.+.+.....    .........+|.+..+++.+.
T Consensus       187 ~i~~~pl~~~~~~~~l~---------~~~~~~~--~~~~~~~~~~~~l~~~~~~~----~~~~~~~G~~r~~~~~l~~a~  251 (389)
T 1fnn_A          187 VIRFSPYTKDQIFDILL---------DRAKAGL--AEGSYSEDILQMIADITGAQ----TPLDTNRGDARLAIDILYRSA  251 (389)
T ss_dssp             EEECCCCBHHHHHHHHH---------HHHHHHB--CTTSSCHHHHHHHHHHHSBS----STTCTTSCCHHHHHHHHHHHH
T ss_pred             eEEeCCCCHHHHHHHHH---------HHHHhhc--CCCCCCHHHHHHHHHHHhhc----ccCCCCCCcHHHHHHHHHHHH
Confidence            66777666554433322         2222111  13467888888776543100    000111346799999999998


Q ss_pred             HHHHHcCCCCCCHHhHHHHHHH
Q psy17703        569 AHAKMRYSETVEVQDVDEAWRL  590 (720)
Q Consensus       569 A~A~l~~~~~V~~~Dv~~Ai~l  590 (720)
                      ..|..+....++.+|+..|+.-
T Consensus       252 ~~a~~~~~~~i~~~~v~~~~~~  273 (389)
T 1fnn_A          252 YAAQQNGRKHIAPEDVRKSSKE  273 (389)
T ss_dssp             HHHHHTTCSSCCHHHHHHHHHH
T ss_pred             HHHHHhCCCCcCHHHHHHHHHH
Confidence            8888888889999999998663

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.69  E-value=3.4e-08  Score=102.89  Aligned_cols=124  Identities=21%  Similarity=0.190  Sum_probs=71.7

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCCCC-ccccCCccccccccceeecCccccceeeecceee----ecCCceeeccccccCC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVPRS-QYTSGKGSSAVGLTAYITKDPETRQMVLQTGALV----LADSGVCCIDEFDKMS  422 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~pr~-~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~----lad~gI~~IDEidkm~  422 (720)
                      ++|+||||||||+|+++++..+... ++..+......          ..++....-+.+.    .....++++||++.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~----------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~  116 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM----------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALC  116 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS----------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTC
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh----------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhh
Confidence            9999999999999999999987542 22222211100          0000000000000    0124689999999864


Q ss_pred             hH-----------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeE
Q psy17703        423 DT-----------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLI  489 (720)
Q Consensus       423 ~~-----------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli  489 (720)
                      ..           ..+.+...|..+.           ......++|++|...             .|++++++  |||..
T Consensus       117 ~~r~~~~~~~~~~~~~~~l~~Lsgg~-----------~~~~~i~ia~tn~p~-------------~LD~al~r~gRfd~~  172 (274)
T 2x8a_A          117 PRRSDRETGASVRVVNQLLTEMDGLE-----------ARQQVFIMAATNRPD-------------IIDPAILRPGRLDKT  172 (274)
T ss_dssp             C---------CTTHHHHHHHHHHTCC-----------STTCEEEEEEESCGG-------------GSCHHHHSTTSSCEE
T ss_pred             cccCCCcchHHHHHHHHHHHhhhccc-----------ccCCEEEEeecCChh-------------hCCHhhcCcccCCeE
Confidence            21           1223333343211           112356788888654             47899998  99998


Q ss_pred             EEecCCChHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLA  505 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la  505 (720)
                      +.+..|..+++.+.+.
T Consensus       173 i~~~~P~~~~r~~il~  188 (274)
T 2x8a_A          173 LFVGLPPPADRLAILK  188 (274)
T ss_dssp             EECCSCCHHHHHHHHH
T ss_pred             EEeCCcCHHHHHHHHH
Confidence            8888777666554444

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=98.67  E-value=7.8e-09  Score=121.86  Aligned_cols=129  Identities=19%  Similarity=0.248  Sum_probs=74.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccc----cccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSS----AVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss----~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      ..+||+||||||||++++++|..+....+. -..+.    .+|.+...++.     ....+-   .....|+||||+|.+
T Consensus       512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~-v~~~~l~s~~vGese~~vr~-----lF~~Ar---~~~P~IifiDEiDsl  582 (806)
T 3cf2_A          512 KGVLFYGPPGCGKTLLAKAIANECQANFIS-IKGPELLTMWFGESEANVRE-----IFDKAR---QAAPCVLFFDELDSI  582 (806)
T ss_dssp             SCCEEESSTTSSHHHHHHHHHHTTTCEEEE-CCHHHHHTTTCSSCHHHHHH-----HHHHHH---TTCSEEEECSCGGGC
T ss_pred             ceEEEecCCCCCchHHHHHHHHHhCCceEE-eccchhhccccchHHHHHHH-----HHHHHH---HcCCceeechhhhHH
Confidence            479999999999999999999987543321 11111    11111111110     000000   113579999999987


Q ss_pred             ChH--------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--c
Q psy17703        422 SDT--------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--R  485 (720)
Q Consensus       422 ~~~--------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--R  485 (720)
                      -..              ..+.|+..|+.-.           -..++.||||+|..+             .|+++|++  |
T Consensus       583 ~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~-----------~~~~V~vi~aTN~p~-------------~lD~AllRpgR  638 (806)
T 3cf2_A          583 AKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNVFIIGATNRPD-------------IIDPAILRPGR  638 (806)
T ss_dssp             C--------------CHHHHHHHHHHHSSC-----------SSSSEEEECC-CCSS-------------SSCHHHHSTTT
T ss_pred             hhccCCCCCCCchHHHHHHHHHHHHHhCCC-----------CCCCEEEEEeCCCch-------------hCCHhHcCCCc
Confidence            432              2345566665211           124578999999765             58999999  9


Q ss_pred             ceeEEEecCCChHHHHHHHHhh
Q psy17703        486 FDLIFLLLDPQSEQFDARLARH  507 (720)
Q Consensus       486 Fdli~~l~d~~~~~~d~~la~~  507 (720)
                      ||.++.+..|..+.+...+..|
T Consensus       639 fd~~i~v~lPd~~~R~~il~~~  660 (806)
T 3cf2_A          639 LDQLIYIPLPDEKSRVAILKAN  660 (806)
T ss_dssp             SCCEEEC-----CHHHHTTTTT
T ss_pred             ceEEEEECCcCHHHHHHHHHHH
Confidence            9998888877655554444433

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=98.66  E-value=1.1e-08  Score=120.55  Aligned_cols=131  Identities=23%  Similarity=0.231  Sum_probs=82.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCc--cccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKG--SSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~--ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      -+|||+||||||||+|++++++.+....+. ++..  +...|.+...++.     ...++-   .....|+||||+|.+.
T Consensus       239 ~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~-----lF~~A~---~~~PsIIfIDEiDal~  310 (806)
T 3cf2_A          239 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRK-----AFEEAE---KNAPAIIFIDELDAIA  310 (806)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHH-----HHHHHT---TSCSEEEEEESGGGTC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHH-----HHHHHH---HcCCeEEEEehhcccc
Confidence            489999999999999999999877543321 1100  0011111111100     000000   1125799999999975


Q ss_pred             hH-----------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeE
Q psy17703        423 DT-----------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLI  489 (720)
Q Consensus       423 ~~-----------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli  489 (720)
                      +.           ..+.|+..|+.-.           -..++.||||+|...             .|+++|++  |||..
T Consensus       311 ~~r~~~~~~~~~riv~~LL~~mdg~~-----------~~~~V~VIaaTN~~d-------------~LD~ALrR~GRFd~~  366 (806)
T 3cf2_A          311 PKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMAATNRPN-------------SIDPALRRFGRFDRE  366 (806)
T ss_dssp             CTTTTCCCTTHHHHHHHHHTHHHHCC-----------GGGCEEEEEECSSTT-------------TSCTTTTSTTSSCEE
T ss_pred             cccCCCCChHHHHHHHHHHHHHhccc-----------ccCCEEEEEecCChh-------------hcCHHHhCCcccceE
Confidence            32           2344555564321           124578999999665             58999999  99999


Q ss_pred             EEecCCChHHHHHHHHhhc
Q psy17703        490 FLLLDPQSEQFDARLARHL  508 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i  508 (720)
                      +.+..|+.+.+.+.+..|.
T Consensus       367 I~i~~Pd~~~R~~IL~~~l  385 (806)
T 3cf2_A          367 VDIGIPDATGRLEILQIHT  385 (806)
T ss_dssp             EECCCCCHHHHHHHHHHTC
T ss_pred             EecCCCCHHHHHHHHHHHh
Confidence            9999888777777776654

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=98.65  E-value=1.3e-08  Score=111.80  Aligned_cols=61  Identities=43%  Similarity=0.728  Sum_probs=56.2

Q ss_pred             hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCCCCC
Q psy17703        654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWN  719 (720)
Q Consensus       654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~~~~  719 (720)
                      .|.+..+++|+||+||+++|+.+++.+|+|+||+|+|++.  |+  +|+++|+|+||+||.. +||
T Consensus       293 ~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~--G~--~lparf~VIAA~NP~~-~yd  353 (506)
T 3f8t_A          293 AGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD--GI--ALNARCAVLAAINPGE-QWP  353 (506)
T ss_dssp             ECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET--TE--EEECCCEEEEEECCCC---C
T ss_pred             CCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC--CE--EcCCCeEEEEEeCccc-ccC
Confidence            6778899999999999999999999999999999999998  77  9999999999999998 885

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.61  E-value=7.6e-09  Score=99.81  Aligned_cols=132  Identities=17%  Similarity=0.223  Sum_probs=71.5

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCcccc-CCccccccccceee--cCccccceeeec----ceeeecC-Cceeecc
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTS-GKGSSAVGLTAYIT--KDPETRQMVLQT----GALVLAD-SGVCCID  416 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~-g~~ss~~glta~~~--~~~~~~~~~~~~----G~l~lad-~gI~~ID  416 (720)
                      ..++||+|+||||||++++++++.+....+.. ..+...........  .....+.+....    ..+...+ +.+++||
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iD  122 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFID  122 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence            46899999999999999999998763211100 00000011100000  000001000000    0000122 3489999


Q ss_pred             ccccCCh--------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703        417 EFDKMSD--------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL  488 (720)
Q Consensus       417 Eidkm~~--------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl  488 (720)
                      |++.+..        +.+..|...++..               ++.+|+++|+..        ......+++++++||+ 
T Consensus       123 e~~~l~~~~~~~~~~~~~~~l~~~~~~~---------------~~~~i~~~~~~~--------~~~~~~~~~~l~~r~~-  178 (195)
T 1jbk_A          123 ELHTMVGAGKADGAMDAGNMLKPALARG---------------ELHCVGATTLDE--------YRQYIEKDAALERRFQ-  178 (195)
T ss_dssp             TGGGGTT------CCCCHHHHHHHHHTT---------------SCCEEEEECHHH--------HHHHTTTCHHHHTTEE-
T ss_pred             CHHHHhccCcccchHHHHHHHHHhhccC---------------CeEEEEeCCHHH--------HHHHHhcCHHHHHHhc-
Confidence            9999963        3366677666532               456778877432        1122357899999998 


Q ss_pred             EEEecCCChHHH
Q psy17703        489 IFLLLDPQSEQF  500 (720)
Q Consensus       489 i~~l~d~~~~~~  500 (720)
                      .+.+..|+.++.
T Consensus       179 ~i~~~~p~~~~~  190 (195)
T 1jbk_A          179 KVFVAEPSVEDT  190 (195)
T ss_dssp             EEECCCCCHHHH
T ss_pred             eeecCCCCHHHH
Confidence            567777765543

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=98.58  E-value=4.6e-08  Score=103.64  Aligned_cols=74  Identities=9%  Similarity=0.069  Sum_probs=48.8

Q ss_pred             ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee-E
Q psy17703        411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL-I  489 (720)
Q Consensus       411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl-i  489 (720)
                      .|++|||+|.+.  .|+.|+..++-..          .-.+++.+|+.+|...-.         ...|++++.|||.. +
T Consensus       134 ~ii~lDE~d~l~--~q~~L~~l~~~~~----------~~~s~~~vI~i~n~~d~~---------~~~L~~~v~SR~~~~~  192 (318)
T 3te6_A          134 TLILIQNPENLL--SEKILQYFEKWIS----------SKNSKLSIICVGGHNVTI---------REQINIMPSLKAHFTE  192 (318)
T ss_dssp             EEEEEECCSSSC--CTHHHHHHHHHHH----------CSSCCEEEEEECCSSCCC---------HHHHHTCHHHHTTEEE
T ss_pred             eEEEEecHHHhh--cchHHHHHHhccc----------ccCCcEEEEEEecCcccc---------hhhcchhhhccCCceE
Confidence            589999999998  5677777765211          113568899999965310         01256678899974 6


Q ss_pred             EEecCCChHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLA  505 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la  505 (720)
                      +.+.+...++....+.
T Consensus       193 i~F~pYt~~el~~Il~  208 (318)
T 3te6_A          193 IKLNKVDKNELQQMII  208 (318)
T ss_dssp             EECCCCCHHHHHHHHH
T ss_pred             EEeCCCCHHHHHHHHH
Confidence            7777776666544443

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=98.54  E-value=3.8e-07  Score=97.59  Aligned_cols=70  Identities=23%  Similarity=0.272  Sum_probs=52.2

Q ss_pred             CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703        409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL  488 (720)
Q Consensus       409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl  488 (720)
                      ...|++|||+|+|+.+.+++|+..||+-             +.++.+|.++|...             +++++++||+. 
T Consensus       108 ~~kvviIdead~l~~~a~naLLk~lEep-------------~~~~~~Il~t~~~~-------------~l~~ti~SRc~-  160 (334)
T 1a5t_A          108 GAKVVWVTDAALLTDAAANALLKTLEEP-------------PAETWFFLATREPE-------------RLLATLRSRCR-  160 (334)
T ss_dssp             SCEEEEESCGGGBCHHHHHHHHHHHTSC-------------CTTEEEEEEESCGG-------------GSCHHHHTTSE-
T ss_pred             CcEEEEECchhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEeCChH-------------hCcHHHhhcce-
Confidence            4569999999999999999999999853             33455666665321             58999999996 


Q ss_pred             EEEecCCChHHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARLA  505 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la  505 (720)
                      .+.+..++.++....+.
T Consensus       161 ~~~~~~~~~~~~~~~L~  177 (334)
T 1a5t_A          161 LHYLAPPPEQYAVTWLS  177 (334)
T ss_dssp             EEECCCCCHHHHHHHHH
T ss_pred             eeeCCCCCHHHHHHHHH
Confidence            67888777665544444

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.53  E-value=5.5e-07  Score=102.15  Aligned_cols=185  Identities=18%  Similarity=0.181  Sum_probs=97.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccccceeecC----ccccceeeec--ceeeecCCceeecccc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLTAYITKD----PETRQMVLQT--GALVLADSGVCCIDEF  418 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glta~~~~~----~~~~~~~~~~--G~l~lad~gI~~IDEi  418 (720)
                      .++||+||||||||++++++++.+...++ ..................    .....+....  +........+++|||+
T Consensus        78 ~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEi  157 (516)
T 1sxj_A           78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEV  157 (516)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSG
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECC
Confidence            58999999999999999999998743221 111110000000000000    0000000000  0001134579999999


Q ss_pred             ccCChHHH---HHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCC
Q psy17703        419 DKMSDTTR---SILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDP  495 (720)
Q Consensus       419 dkm~~~~~---~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~  495 (720)
                      |.+....+   ..|...++..               +..+|.++|....           -.+ +++.+| ...+.+..+
T Consensus       158 d~l~~~~~~~l~~L~~~l~~~---------------~~~iIli~~~~~~-----------~~l-~~l~~r-~~~i~f~~~  209 (516)
T 1sxj_A          158 DGMSGGDRGGVGQLAQFCRKT---------------STPLILICNERNL-----------PKM-RPFDRV-CLDIQFRRP  209 (516)
T ss_dssp             GGCCTTSTTHHHHHHHHHHHC---------------SSCEEEEESCTTS-----------STT-GGGTTT-SEEEECCCC
T ss_pred             CccchhhHHHHHHHHHHHHhc---------------CCCEEEEEcCCCC-----------ccc-hhhHhc-eEEEEeCCC
Confidence            99987665   6777777642               1224444443210           023 345544 457888877


Q ss_pred             ChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcC
Q psy17703        496 QSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRY  575 (720)
Q Consensus       496 ~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~  575 (720)
                      +.++....+..            .+.. ....+++++.+.|.+..             ....|++..++..+   +.  .
T Consensus       210 ~~~~~~~~L~~------------i~~~-~~~~i~~~~l~~la~~s-------------~GdiR~~i~~L~~~---~~--~  258 (516)
T 1sxj_A          210 DANSIKSRLMT------------IAIR-EKFKLDPNVIDRLIQTT-------------RGDIRQVINLLSTI---ST--T  258 (516)
T ss_dssp             CHHHHHHHHHH------------HHHH-HTCCCCTTHHHHHHHHT-------------TTCHHHHHHHHTHH---HH--H
T ss_pred             CHHHHHHHHHH------------HHHH-cCCCCCHHHHHHHHHHc-------------CCcHHHHHHHHHHH---Hh--c
Confidence            76654333321            1111 13457778877776431             12347666655432   22  3


Q ss_pred             CCCCCHHhHHHHHH
Q psy17703        576 SETVEVQDVDEAWR  589 (720)
Q Consensus       576 ~~~V~~~Dv~~Ai~  589 (720)
                      ...++.+++.+++.
T Consensus       259 ~~~It~~~v~~~~~  272 (516)
T 1sxj_A          259 TKTINHENINEISK  272 (516)
T ss_dssp             SSCCCTTHHHHHHH
T ss_pred             CCCCchHHHHHHHH
Confidence            46788888888765

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.47  E-value=8.3e-09  Score=99.39  Aligned_cols=128  Identities=21%  Similarity=0.260  Sum_probs=69.2

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccC-Cccccccccce--eecCcccccee--ee--cceeeec-CCceeec
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSG-KGSSAVGLTAY--ITKDPETRQMV--LQ--TGALVLA-DSGVCCI  415 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g-~~ss~~glta~--~~~~~~~~~~~--~~--~G~l~la-d~gI~~I  415 (720)
                      ...++||+||||||||++++.+++.+.+...... .+.........  .......+.+.  +.  -..+... .+.+++|
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i  121 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFI  121 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEE
Confidence            3568999999999999999999987633111000 00000000000  00000000000  00  0011111 2349999


Q ss_pred             cccccCC---------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703        416 DEFDKMS---------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF  486 (720)
Q Consensus       416 DEidkm~---------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF  486 (720)
                      ||++.+.         .+..+.|...++.               .++.+|+++|+...        .....+++++++||
T Consensus       122 De~~~l~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~ii~~~~~~~~--------~~~~~~~~~l~~R~  178 (187)
T 2p65_A          122 DEIHTVVGAGAVAEGALDAGNILKPMLAR---------------GELRCIGATTVSEY--------RQFIEKDKALERRF  178 (187)
T ss_dssp             TTGGGGSSSSSSCTTSCCTHHHHHHHHHT---------------TCSCEEEEECHHHH--------HHHTTTCHHHHHHE
T ss_pred             eCHHHhcccccccccchHHHHHHHHHHhc---------------CCeeEEEecCHHHH--------HHHHhccHHHHHhc
Confidence            9999987         4456667666654               24668888885431        11235789999999


Q ss_pred             eeEEEecCC
Q psy17703        487 DLIFLLLDP  495 (720)
Q Consensus       487 dli~~l~d~  495 (720)
                      +. +.+..|
T Consensus       179 ~~-i~i~~p  186 (187)
T 2p65_A          179 QQ-ILVEQP  186 (187)
T ss_dssp             EE-EECCSC
T ss_pred             Cc-ccCCCC
Confidence            94 555544

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.45  E-value=7.2e-07  Score=96.13  Aligned_cols=205  Identities=17%  Similarity=0.137  Sum_probs=114.5

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCC-------CccccCCcccc-ccccceeec---C--cccc----ceeeec-ceee
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPR-------SQYTSGKGSSA-VGLTAYITK---D--PETR----QMVLQT-GALV  406 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr-------~~~~~g~~ss~-~glta~~~~---~--~~~~----~~~~~~-G~l~  406 (720)
                      ..+++|+||||+|||+|++.+++.+.+       .++..+..... ..+...+..   .  +..+    +..-.. ..+.
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~  124 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR  124 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh
Confidence            458999999999999999999986621       11111100000 000000000   0  0000    000000 0000


Q ss_pred             ec-CCceeeccccccCC----hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChh
Q psy17703        407 LA-DSGVCCIDEFDKMS----DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHT  481 (720)
Q Consensus       407 la-d~gI~~IDEidkm~----~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~a  481 (720)
                      .. ...+++|||++.+.    .+....|.+.++..            -+.++.+|+++|...        +  ...+.+.
T Consensus       125 ~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~------------~~~~~~~I~~~~~~~--------~--~~~~~~~  182 (386)
T 2qby_A          125 DYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV------------NKSKISFIGITNDVK--------F--VDLLDPR  182 (386)
T ss_dssp             TCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC------------CC--EEEEEEESCGG--------G--GGGCTTH
T ss_pred             ccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc------------CCCeEEEEEEECCCC--------h--HhhhCHH
Confidence            01 14589999999875    34455555555432            123567788887432        0  0136788


Q ss_pred             hhcccee-EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHH
Q psy17703        482 LLSRFDL-IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQL  560 (720)
Q Consensus       482 LlsRFdl-i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~l  560 (720)
                      +.+||.. .+.+.++..++....+.         .++..+  .....+++++.+.+..+...          ...++|.+
T Consensus       183 ~~~r~~~~~i~l~~l~~~~~~~il~---------~~~~~~--~~~~~~~~~~~~~l~~~~~~----------~~G~~r~~  241 (386)
T 2qby_A          183 VKSSLSEEEIIFPPYNAEELEDILT---------KRAQMA--FKPGVLPDNVIKLCAALAAR----------EHGDARRA  241 (386)
T ss_dssp             HHHTTTTEEEEECCCCHHHHHHHHH---------HHHHHH--BCSSCSCHHHHHHHHHHHHH----------TTCCHHHH
T ss_pred             HhccCCCeeEEeCCCCHHHHHHHHH---------HHHHhh--ccCCCCCHHHHHHHHHHHHH----------hcCCHHHH
Confidence            8999963 67777776655433333         222111  11346788888777654321          11357988


Q ss_pred             HHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHH
Q psy17703        561 ESLIRLSEAHAKMRYSETVEVQDVDEAWRLHR  592 (720)
Q Consensus       561 e~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~~  592 (720)
                      ..+++.+...|..+....|+.+|+..|+.-..
T Consensus       242 ~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~  273 (386)
T 2qby_A          242 LDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE  273 (386)
T ss_dssp             HHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence            88998888888877888999999999987543

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=98.44  E-value=3e-07  Score=97.18  Aligned_cols=129  Identities=14%  Similarity=0.171  Sum_probs=75.3

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccce--eecCccccceeeeccee-eecCCceeeccccccC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAY--ITKDPETRQMVLQTGAL-VLADSGVCCIDEFDKM  421 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~--~~~~~~~~~~~~~~G~l-~lad~gI~~IDEidkm  421 (720)
                      ..+.||+||||+|||++++++++....  +.. .......+.+.  ...-...++..-..... ..+...|++|||++.|
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~--~~~-~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~l   94 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYVEK--FPP-KASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERM   94 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHT--SCC-CTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhCch--hhc-cCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHh
Confidence            358999999999999999999874210  000 00000000000  00000000100000000 1234579999999999


Q ss_pred             ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHH
Q psy17703        422 SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFD  501 (720)
Q Consensus       422 ~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d  501 (720)
                      +.+.+++|+..||+-             |..+.+|.++|..             .++.+++.||   ++.+..++.++..
T Consensus        95 t~~a~naLLk~LEep-------------~~~t~fIl~t~~~-------------~kl~~tI~SR---~~~f~~l~~~~i~  145 (305)
T 2gno_A           95 TQQAANAFLKALEEP-------------PEYAVIVLNTRRW-------------HYLLPTIKSR---VFRVVVNVPKEFR  145 (305)
T ss_dssp             CHHHHHHTHHHHHSC-------------CTTEEEEEEESCG-------------GGSCHHHHTT---SEEEECCCCHHHH
T ss_pred             CHHHHHHHHHHHhCC-------------CCCeEEEEEECCh-------------HhChHHHHce---eEeCCCCCHHHHH
Confidence            999999999999963             2344445444421             1588999999   7788887777655


Q ss_pred             HHHH
Q psy17703        502 ARLA  505 (720)
Q Consensus       502 ~~la  505 (720)
                      ..+.
T Consensus       146 ~~L~  149 (305)
T 2gno_A          146 DLVK  149 (305)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5444

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.31  E-value=5.6e-06  Score=109.21  Aligned_cols=187  Identities=16%  Similarity=0.238  Sum_probs=118.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccc--cCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYT--SGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~--~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      .....+.||+|||||.+++.+++.+.+..++  +..+.+...+          +.  +-.|.  ...|..+|+|||++++
T Consensus       604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~----------g~--i~~G~--~~~GaW~cfDEfNrl~  669 (3245)
T 3vkg_A          604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAM----------SR--IFVGL--CQCGAWGCFDEFNRLE  669 (3245)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHH----------HH--HHHHH--HHHTCEEEEETTTSSC
T ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHH----------HH--HHhhH--hhcCcEEEehhhhcCC
Confidence            4567899999999999999999999876543  2222221111          00  01222  1246788999999999


Q ss_pred             hHHHHHHHHHHH---------hceEeeecc-CeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEe
Q psy17703        423 DTTRSILHEVME---------QQTLSIAKA-GIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLL  492 (720)
Q Consensus       423 ~~~~~~L~e~mE---------~~~vsi~k~-g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l  492 (720)
                      .+..+++.+.+.         ..++.+  . |....++..+.+++|+||.+.   +      ...||++|.+||- -+.+
T Consensus       670 ~~vLSvv~~qi~~I~~a~~~~~~~~~~--~~G~~i~l~~~~~vfiTmNpgY~---g------r~eLP~nLk~lFr-~v~m  737 (3245)
T 3vkg_A          670 ERILSAVSQQIQTIQVALKENSKEVEL--LGGKNISLHQDMGIFVTMNPGYA---G------RSNLPDNLKKLFR-SMAM  737 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSEECC--C---CEECCTTCEEEECBCCCGG---G------CCCSCHHHHTTEE-EEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCeEEe--cCCCEEeecCCeEEEEEeCCCcc---C------cccChHHHHhhcE-EEEE
Confidence            999888777665         344444  4 777889999999999999432   1      2369999999995 4556


Q ss_pred             cCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703        493 LDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK  572 (720)
Q Consensus       493 ~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~  572 (720)
                      ..|+.+..-+.             +.++.   --.-.......++..|.-.+..=+...+.-.-.|.+.++++.|-+.-|
T Consensus       738 ~~Pd~~~i~ei-------------~L~s~---Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~lkr  801 (3245)
T 3vkg_A          738 IKPDREMIAQV-------------MLYSQ---GFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIKR  801 (3245)
T ss_dssp             CSCCHHHHHHH-------------HHHTT---TCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHHHH
T ss_pred             eCCCHHHHHHH-------------HHHHc---ccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHH
Confidence            55544322221             11111   112234555667777765555433344544446999999998876644


Q ss_pred             H
Q psy17703        573 M  573 (720)
Q Consensus       573 l  573 (720)
                      -
T Consensus       802 ~  802 (3245)
T 3vkg_A          802 K  802 (3245)
T ss_dssp             S
T ss_pred             h
Confidence            3

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.06  E-value=3.2e-06  Score=79.58  Aligned_cols=105  Identities=18%  Similarity=0.250  Sum_probs=63.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT  424 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~  424 (720)
                      .-.++|+|++|+|||+|+++++..++.    .|.  ....+.+.    .....      + .+.+..+++|||++.+...
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~~~~----~g~--~~~~~~~~----~~~~~------~-~~~~~~lLilDE~~~~~~~   98 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQALE----AGK--NAAYIDAA----SMPLT------D-AAFEAEYLAVDQVEKLGNE   98 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHHHHT----TTC--CEEEEETT----TSCCC------G-GGGGCSEEEEESTTCCCSH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHh----cCC--cEEEEcHH----HhhHH------H-HHhCCCEEEEeCccccChH
Confidence            457999999999999999999987642    111  11111110    00000      1 1234679999999999887


Q ss_pred             HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703        425 TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD  487 (720)
Q Consensus       425 ~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd  487 (720)
                      .+..|.++++...    ..|       ...+|.|+|.....|.         .+ +.|.|||.
T Consensus        99 ~~~~l~~li~~~~----~~g-------~~~iiits~~~p~~l~---------~~-~~L~SRl~  140 (149)
T 2kjq_A           99 EQALLFSIFNRFR----NSG-------KGFLLLGSEYTPQQLV---------IR-EDLRTRMA  140 (149)
T ss_dssp             HHHHHHHHHHHHH----HHT-------CCEEEEEESSCTTTSS---------CC-HHHHHHGG
T ss_pred             HHHHHHHHHHHHH----HcC-------CcEEEEECCCCHHHcc---------cc-HHHHHHHh
Confidence            7888888876431    011       1224556664433322         13 88999986

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.96  E-value=1.8e-05  Score=77.95  Aligned_cols=122  Identities=20%  Similarity=0.246  Sum_probs=67.5

Q ss_pred             cCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeecccccc
Q psy17703        341 ETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK  420 (720)
Q Consensus       341 E~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk  420 (720)
                      +.|..-++|++||||||||+++.++++.+...+..-..             . .. .+.+.    .+.+..+++|||++.
T Consensus        54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fan-------------s-~s-~f~l~----~l~~~kIiiLDEad~  114 (212)
T 1tue_A           54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVN-------------S-TS-HFWLE----PLTDTKVAMLDDATT  114 (212)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCC-------------S-SS-CGGGG----GGTTCSSEEEEEECH
T ss_pred             cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEe-------------c-cc-hhhhc----ccCCCCEEEEECCCc
Confidence            45555679999999999999999999876321111000             0 00 01111    123456899999985


Q ss_pred             CChHH-HHHHHHHHHhceEeeeccCeE-EeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEec
Q psy17703        421 MSDTT-RSILHEVMEQQTLSIAKAGII-CQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLL  493 (720)
Q Consensus       421 m~~~~-~~~L~e~mE~~~vsi~k~g~~-~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~  493 (720)
                      ..... ...+..+|+...+++.+.... ...+ ..-+|-|+|-....         . .--..|.||+- .|.+.
T Consensus       115 ~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~-~~PlIITtN~~~~~---------~-~~~~~L~SRi~-~f~F~  177 (212)
T 1tue_A          115 TCWTYFDTYMRNALDGNPISIDRKHKPLIQLK-CPPILLTTNIHPAK---------D-NRWPYLESRIT-VFEFP  177 (212)
T ss_dssp             HHHHHHHHHCHHHHHTCCEEEC----CCEEEC-CCCEEEEESSCTTS---------S-SSCHHHHTSCE-EEECC
T ss_pred             hhHHHHHHHHHHHhCCCcccHHHhhcCccccC-CCCEEEecCCCccc---------c-cchhhhhhhEE-EEEcC
Confidence            32222 235667777766666322111 1122 23567778843321         1 12278999996 55554

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=97.72  E-value=3.9e-05  Score=83.54  Aligned_cols=143  Identities=13%  Similarity=0.075  Sum_probs=81.8

Q ss_pred             ceeeccccccCCh------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCC---hh
Q psy17703        411 GVCCIDEFDKMSD------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLP---HT  481 (720)
Q Consensus       411 gI~~IDEidkm~~------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~---~a  481 (720)
                      -+++|||++.+..      +....|...+++...    .+    ...++.+|+++|...        +.+  .+.   +.
T Consensus       140 ~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~----~~----~~~~v~lI~~~~~~~--------~~~--~l~~~~~~  201 (412)
T 1w5s_A          140 LLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS----RD----GVNRIGFLLVASDVR--------ALS--YMREKIPQ  201 (412)
T ss_dssp             EEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC----TT----SCCBEEEEEEEEETH--------HHH--HHHHHCHH
T ss_pred             EEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc----CC----CCceEEEEEEecccc--------HHH--HHhhhcch
Confidence            3899999998753      444445555543210    00    024677887776221        000  123   56


Q ss_pred             hhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHH
Q psy17703        482 LLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLE  561 (720)
Q Consensus       482 LlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le  561 (720)
                      +.+||...+.+.+.+.++....+.         .++..+.  ....+++++.+.+.+..-..       .+....||.+.
T Consensus       202 ~~~~~~~~i~l~~l~~~e~~~ll~---------~~~~~~~--~~~~~~~~~~~~i~~~~~~~-------~~~~G~p~~~~  263 (412)
T 1w5s_A          202 VESQIGFKLHLPAYKSRELYTILE---------QRAELGL--RDTVWEPRHLELISDVYGED-------KGGDGSARRAI  263 (412)
T ss_dssp             HHTTCSEEEECCCCCHHHHHHHHH---------HHHHHHB--CTTSCCHHHHHHHHHHHCGG-------GTSCCCHHHHH
T ss_pred             hhhhcCCeeeeCCCCHHHHHHHHH---------HHHHhcC--CCCCCChHHHHHHHHHHHHh-------ccCCCcHHHHH
Confidence            677877666676666554433322         2222111  12356777777666443100       00114579999


Q ss_pred             HHHHHHHHHHHHcCCCCCCHHhHHHHHH
Q psy17703        562 SLIRLSEAHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       562 ~lirla~A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      .+++.+...|..+....++.+++..|+.
T Consensus       264 ~l~~~a~~~a~~~~~~~i~~~~v~~~~~  291 (412)
T 1w5s_A          264 VALKMACEMAEAMGRDSLSEDLVRKAVS  291 (412)
T ss_dssp             HHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence            9998887788777888899999988765

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.57  E-value=1.2e-05  Score=77.42  Aligned_cols=104  Identities=14%  Similarity=0.121  Sum_probs=57.3

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccc---cceeeecceeeecCCceeeccccc--
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPET---RQMVLQTGALVLADSGVCCIDEFD--  419 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~---~~~~~~~G~l~lad~gI~~IDEid--  419 (720)
                      .-+++|+||||+|||+|+++++..+..   ..|..  ...++..-......   .......-.-.+.+..+++|||++  
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~~---~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~  112 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIYE---KKGIR--GYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE  112 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHHH---HSCCC--CCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHH---HcCCe--EEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence            468999999999999999999987631   01110  00011000000000   000000000012356899999998  


Q ss_pred             cCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCC
Q psy17703        420 KMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQ  465 (720)
Q Consensus       420 km~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~  465 (720)
                      .+++..+..|+++++...            ..+..+|.++|.....
T Consensus       113 ~~~~~~~~~l~~ll~~~~------------~~~~~ii~tsn~~~~~  146 (180)
T 3ec2_A          113 RLSDWQRELISYIITYRY------------NNLKSTIITTNYSLQR  146 (180)
T ss_dssp             CCCHHHHHHHHHHHHHHH------------HTTCEEEEECCCCSCC
T ss_pred             cCCHHHHHHHHHHHHHHH------------HcCCCEEEEcCCChhH
Confidence            567777788888876431            1235677788865533

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=97.55  E-value=0.00021  Score=73.33  Aligned_cols=125  Identities=14%  Similarity=0.119  Sum_probs=66.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT  424 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~  424 (720)
                      .-+++|+||||||||.++.++++.++..-..+..             +   ..+.+.+    +.+.-|++.||. .|..+
T Consensus       104 ~n~~~l~GppgtGKt~~a~ala~~~~l~G~vn~~-------------~---~~f~l~~----~~~k~i~l~Ee~-~~~~d  162 (267)
T 1u0j_A          104 RNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWT-------------N---ENFPFND----CVDKMVIWWEEG-KMTAK  162 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSSCEEECCTT-------------C---SSCTTGG----GSSCSEEEECSC-CEETT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhhhcccceeecc-------------c---ccccccc----ccccEEEEeccc-cchhH
Confidence            4579999999999999999999865431000000             0   0111111    123445555554 45556


Q ss_pred             HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEec
Q psy17703        425 TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLL  493 (720)
Q Consensus       425 ~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~  493 (720)
                      ....+..+|+-..+.+......-..-.++-+|-++|-....+...-...  ....++|.||.- +|.+.
T Consensus       163 ~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s--~~~~~~L~sR~~-~f~F~  228 (267)
T 1u0j_A          163 VVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTT--FEHQQPLQDRMF-KFELT  228 (267)
T ss_dssp             THHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEE--CTTHHHHHTTEE-EEECC
T ss_pred             HHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccc--hhhhHHHhhhEE-EEECC
Confidence            6678888898777766332221112235667778885332210000000  124477999985 56665

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.18  E-value=1.7e-05  Score=83.82  Aligned_cols=26  Identities=31%  Similarity=0.404  Sum_probs=23.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..+++|+||||||||.|+++++..+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999999998654

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=97.09  E-value=0.00042  Score=68.25  Aligned_cols=61  Identities=8%  Similarity=0.096  Sum_probs=37.9

Q ss_pred             CceeeccccccC--Ch-HHH--HHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc
Q psy17703        410 SGVCCIDEFDKM--SD-TTR--SILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS  484 (720)
Q Consensus       410 ~gI~~IDEidkm--~~-~~~--~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls  484 (720)
                      +.+++|||++.+  +. +..  ..++..++...            .....+|.+++|..             .|+.++.+
T Consensus        88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r------------~~~~~iil~tq~~~-------------~l~~~lr~  142 (199)
T 2r2a_A           88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR------------HQGIDIFVLTQGPK-------------LLDQNLRT  142 (199)
T ss_dssp             TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT------------TTTCEEEEEESCGG-------------GBCHHHHT
T ss_pred             ceEEEEEChhhhccCccccchhHHHHHHHHhcC------------cCCeEEEEECCCHH-------------HHhHHHHH
Confidence            789999999988  22 111  12334443211            12345666666532             58889999


Q ss_pred             cceeEEEecCC
Q psy17703        485 RFDLIFLLLDP  495 (720)
Q Consensus       485 RFdli~~l~d~  495 (720)
                      |++..+.+..+
T Consensus       143 ri~~~~~l~~~  153 (199)
T 2r2a_A          143 LVRKHYHIASN  153 (199)
T ss_dssp             TEEEEEEEEEC
T ss_pred             HhheEEEEcCc
Confidence            99988888753

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.84  E-value=0.0013  Score=63.81  Aligned_cols=26  Identities=12%  Similarity=0.289  Sum_probs=20.8

Q ss_pred             CceeeccccccCChHHHHHHHHHHHh
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQ  435 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~  435 (720)
                      ..+++|||+..++++....|...+++
T Consensus        77 ~dvviIDE~Q~~~~~~~~~l~~l~~~  102 (184)
T 2orw_A           77 TRGVFIDEVQFFNPSLFEVVKDLLDR  102 (184)
T ss_dssp             EEEEEECCGGGSCTTHHHHHHHHHHT
T ss_pred             CCEEEEECcccCCHHHHHHHHHHHHC
Confidence            45899999999987777777777665

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=96.60  E-value=0.0035  Score=66.63  Aligned_cols=187  Identities=12%  Similarity=0.108  Sum_probs=100.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeeccee-eecCCceeecccccc-CC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGAL-VLADSGVCCIDEFDK-MS  422 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l-~lad~gI~~IDEidk-m~  422 (720)
                      ....||+||+|+||++.++.+++.+...-+   .......+.+    +....+..-+.... ..++.-+++|||.+. |+
T Consensus        18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~----~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~   90 (343)
T 1jr3_D           18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGF---EEHHTFSIDP----NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN   90 (343)
T ss_dssp             CSEEEEEESCHHHHHHHHHHHHHHHHHHTC---CEEEEEECCT----TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC
T ss_pred             CcEEEEECCcHHHHHHHHHHHHHHHHhCCC---CeeEEEEecC----CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC
Confidence            346888999999999999998875421000   0000000000    00001110001011 124567999999999 99


Q ss_pred             hHHHHHHHHHHHhceEeeeccCeEEeecCceEE-EecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHH
Q psy17703        423 DTTRSILHEVMEQQTLSIAKAGIICQLNARTSI-LAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFD  501 (720)
Q Consensus       423 ~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~i-iaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d  501 (720)
                      .+.+++|+..+|+-             |..+.+ +++.++...        .....+.+++.+|+- ++.+..++..+. 
T Consensus        91 ~~~~~aLl~~le~p-------------~~~~~~il~~~~~~~~--------~~~~k~~~~i~sr~~-~~~~~~l~~~~l-  147 (343)
T 1jr3_D           91 AAINEQLLTLTGLL-------------HDDLLLIVRGNKLSKA--------QENAAWFTALANRSV-QVTCQTPEQAQL-  147 (343)
T ss_dssp             TTHHHHHHHHHTTC-------------BTTEEEEEEESCCCTT--------TTTSHHHHHHTTTCE-EEEECCCCTTHH-
T ss_pred             hHHHHHHHHHHhcC-------------CCCeEEEEEcCCCChh--------hHhhHHHHHHHhCce-EEEeeCCCHHHH-
Confidence            99999999999852             223333 344332210        011247789999995 677766655433 


Q ss_pred             HHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCH
Q psy17703        502 ARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEV  581 (720)
Q Consensus       502 ~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~  581 (720)
                                  .+++...-+...-.+++++.+.|.+..             ..+.|.+...+.-   .+-......+|.
T Consensus       148 ------------~~~l~~~~~~~g~~i~~~a~~~l~~~~-------------~gdl~~~~~elek---l~l~~~~~~It~  199 (343)
T 1jr3_D          148 ------------PRWVAARAKQLNLELDDAANQVLCYCY-------------EGNLLALAQALER---LSLLWPDGKLTL  199 (343)
T ss_dssp             ------------HHHHHHHHHHTTCEECHHHHHHHHHSS-------------TTCHHHHHHHHHH---HHHHCTTCEECH
T ss_pred             ------------HHHHHHHHHHcCCCCCHHHHHHHHHHh-------------chHHHHHHHHHHH---HHHhcCCCCCCH
Confidence                        233322222235578889888887431             1123544443321   122223457888


Q ss_pred             HhHHHHHH
Q psy17703        582 QDVDEAWR  589 (720)
Q Consensus       582 ~Dv~~Ai~  589 (720)
                      +|+.+.+.
T Consensus       200 e~V~~~~~  207 (343)
T 1jr3_D          200 PRVEQAVN  207 (343)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88877654

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=95.56  E-value=0.016  Score=57.79  Aligned_cols=26  Identities=15%  Similarity=0.294  Sum_probs=22.2

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      |.++|++.|+||+|||+++-.++..+
T Consensus         5 g~l~I~~~~kgGvGKTt~a~~la~~l   30 (228)
T 2r8r_A            5 GRLKVFLGAAPGVGKTYAMLQAAHAQ   30 (228)
T ss_dssp             CCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHH
Confidence            77899999999999999977766543

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.41  E-value=0.0062  Score=59.23  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=23.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .+++|+||||||||+|++++++.+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            7899999999999999999998663

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=94.85  E-value=0.022  Score=63.17  Aligned_cols=24  Identities=17%  Similarity=0.448  Sum_probs=21.7

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      .++++.|+||||||+++.+++..+
T Consensus        46 ~~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           46 HHVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHH
Confidence            399999999999999999988765

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=94.67  E-value=0.012  Score=67.29  Aligned_cols=40  Identities=30%  Similarity=0.405  Sum_probs=31.4

Q ss_pred             ccchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        330 HFTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       330 ~~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      .+.+.|.--+......-.+++.|+||||||+++..+...+
T Consensus       189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l  228 (574)
T 3e1s_A          189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLA  228 (574)
T ss_dssp             TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3456777666555556789999999999999999988754

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=94.59  E-value=0.029  Score=59.24  Aligned_cols=61  Identities=21%  Similarity=0.346  Sum_probs=55.1

Q ss_pred             ccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCCCCC
Q psy17703        659 LADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWN  719 (720)
Q Consensus       659 ~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~~~~  719 (720)
                      .+..++.++||++.++.+....+++.|+++.+.+...|....++.+..++|++||..++++
T Consensus       142 ~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~  202 (350)
T 1g8p_A          142 RANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLR  202 (350)
T ss_dssp             HHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCC
T ss_pred             ecCCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCC
Confidence            4456789999999999999999999999999999999999999999999999999776553

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=94.26  E-value=0.024  Score=53.63  Aligned_cols=26  Identities=23%  Similarity=0.429  Sum_probs=23.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      ..|+|.|+||+|||++++.+++.++.
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~l~~   29 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSVLPE   29 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            35899999999999999999998764

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=94.11  E-value=0.026  Score=53.12  Aligned_cols=25  Identities=28%  Similarity=0.324  Sum_probs=22.7

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..|.|+|+||+|||++++.+++.++
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999998765

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=93.57  E-value=0.034  Score=52.95  Aligned_cols=25  Identities=32%  Similarity=0.324  Sum_probs=22.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .+|+|+|+||+|||++++.+++.+.
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~l~   30 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKLTK   30 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4799999999999999999998764

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=93.52  E-value=0.033  Score=52.06  Aligned_cols=24  Identities=21%  Similarity=0.120  Sum_probs=21.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .|+|.|+||+|||++++.+++.+.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999998764

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=93.47  E-value=0.034  Score=52.62  Aligned_cols=24  Identities=29%  Similarity=0.303  Sum_probs=21.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +|+|.|+||+|||++++.+++.+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~   29 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLD   29 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            689999999999999999998764

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=93.39  E-value=0.037  Score=52.20  Aligned_cols=21  Identities=33%  Similarity=0.351  Sum_probs=19.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .|+|.|+||+|||++++.+++
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHh
Confidence            589999999999999999987

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=93.35  E-value=0.035  Score=53.30  Aligned_cols=24  Identities=25%  Similarity=0.625  Sum_probs=22.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ++.|+||+|+|||+|++.++..++
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            688999999999999999998774

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=93.15  E-value=0.044  Score=51.41  Aligned_cols=25  Identities=24%  Similarity=0.198  Sum_probs=22.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+|+|.|.||+|||++++.+++.+.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3899999999999999999998664

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=93.13  E-value=0.043  Score=53.26  Aligned_cols=25  Identities=24%  Similarity=0.275  Sum_probs=22.7

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -.|+|+|+||+|||++++.+++.+.
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~~l~   50 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFARKLN   50 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            4799999999999999999998764

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=92.92  E-value=0.047  Score=51.82  Aligned_cols=26  Identities=35%  Similarity=0.363  Sum_probs=23.1

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..+|+|+|+||+|||++++.+++.+.
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~~~   36 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASKSG   36 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999998764

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=92.88  E-value=0.058  Score=62.03  Aligned_cols=38  Identities=18%  Similarity=0.224  Sum_probs=27.3

Q ss_pred             chhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        332 TDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       332 ~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      .++|..-+...-.+-.+++.|+||||||+++.++...+
T Consensus       151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l  188 (608)
T 1w36_D          151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL  188 (608)
T ss_dssp             CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence            35666544333356689999999999999988776543

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=92.84  E-value=0.059  Score=52.76  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=21.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +|+|.|+||+|||++++.+++.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYG   25 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999988664

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=92.83  E-value=0.047  Score=52.22  Aligned_cols=24  Identities=33%  Similarity=0.534  Sum_probs=21.3

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      .-.+.|+|+||+|||++++.+++.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            346889999999999999999876

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=92.71  E-value=0.065  Score=51.26  Aligned_cols=24  Identities=38%  Similarity=0.630  Sum_probs=22.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      ..+|+|+|+||+|||++++.+++.
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            468999999999999999999987

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=92.45  E-value=0.053  Score=51.63  Aligned_cols=24  Identities=29%  Similarity=0.450  Sum_probs=21.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .|+|.|+||+|||++++.+++.++
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            489999999999999999998764

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=92.43  E-value=0.066  Score=51.72  Aligned_cols=24  Identities=13%  Similarity=0.306  Sum_probs=21.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+.|+||+|+|||++++.++...|
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHhhCC
Confidence            477999999999999999999876

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=92.34  E-value=0.065  Score=50.95  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .|+|.|+||+|||++++.+++.+.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcC
Confidence            489999999999999999998654

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=92.32  E-value=0.058  Score=51.32  Aligned_cols=25  Identities=16%  Similarity=0.272  Sum_probs=22.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..|+|.|+||+|||++++.+++.++
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999998654

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=92.30  E-value=0.059  Score=50.17  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=19.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .|+|.|+||+|||++++.+ +...
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~~g   25 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KERG   25 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HHTT
T ss_pred             EEEEECCCCCCHHHHHHHH-HHCC
Confidence            5889999999999999999 5443

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=92.30  E-value=0.072  Score=50.82  Aligned_cols=25  Identities=16%  Similarity=0.344  Sum_probs=22.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      --+.|+||+|+|||+|++.+++..+
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3588999999999999999998876

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=92.27  E-value=0.068  Score=52.27  Aligned_cols=24  Identities=29%  Similarity=0.434  Sum_probs=21.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +|+|.|+||+|||++++.+++.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYE   25 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999987654

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=92.20  E-value=0.06  Score=51.39  Aligned_cols=26  Identities=23%  Similarity=0.290  Sum_probs=22.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...|+|.|+||+|||++++.+++.+.
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~~l~   30 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALATGLR   30 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            35789999999999999999998653

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=92.20  E-value=0.073  Score=51.80  Aligned_cols=26  Identities=27%  Similarity=0.542  Sum_probs=23.3

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...++|+|+||+|||++++.+++.++
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            45789999999999999999998875

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=92.09  E-value=0.07  Score=50.01  Aligned_cols=24  Identities=13%  Similarity=0.178  Sum_probs=21.8

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .|+|.|+||+|||++++.+++.+.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg   27 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARALG   27 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999998664

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=92.06  E-value=0.065  Score=51.92  Aligned_cols=25  Identities=20%  Similarity=0.235  Sum_probs=22.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..|+|.|+||+|||++++.+++.+.
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~lg   43 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEACG   43 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4699999999999999999998763

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=92.03  E-value=0.067  Score=50.42  Aligned_cols=24  Identities=29%  Similarity=0.264  Sum_probs=21.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      -.++|+|+||+|||++++.+++.+
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhh
Confidence            468999999999999999999865

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=92.03  E-value=0.065  Score=51.96  Aligned_cols=25  Identities=20%  Similarity=0.299  Sum_probs=22.1

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      .-.+.|+|+||+|||++++.+++.+
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhh
Confidence            3468899999999999999999876

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=92.00  E-value=0.062  Score=51.42  Aligned_cols=22  Identities=18%  Similarity=0.202  Sum_probs=19.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      -+.|+|+||+|||++++.+++.
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~~   25 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAAQ   25 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            3689999999999999999873

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=92.00  E-value=0.07  Score=50.73  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=22.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..|+|+|+||+|||++++.+++.+.
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~~l~   29 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQELG   29 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999987653

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=91.98  E-value=0.18  Score=52.77  Aligned_cols=51  Identities=24%  Similarity=0.378  Sum_probs=47.5

Q ss_pred             CcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCC
Q psy17703        663 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCD  715 (720)
Q Consensus       663 ~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~  715 (720)
                      ++.++||++.++.+...++++.|++..+.+  .|....++.++.|+|+.||..
T Consensus       111 ~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~--~g~~~~~~~~~~viat~np~~  161 (331)
T 2r44_A          111 NFILADEVNRSPAKVQSALLECMQEKQVTI--GDTTYPLDNPFLVLATQNPVE  161 (331)
T ss_dssp             SEEEEETGGGSCHHHHHHHHHHHHHSEEEE--TTEEEECCSSCEEEEEECTTC
T ss_pred             cEEEEEccccCCHHHHHHHHHHHhcCceee--CCEEEECCCCEEEEEecCCCc
Confidence            688999999999999999999999999888  688899999999999999976

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=91.94  E-value=0.07  Score=54.13  Aligned_cols=25  Identities=12%  Similarity=0.089  Sum_probs=21.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      .++|+|+||+|||++++.+++.++.
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~~   27 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETGW   27 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCCC
Confidence            4789999999999999999987653

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=91.92  E-value=0.067  Score=50.64  Aligned_cols=26  Identities=19%  Similarity=0.230  Sum_probs=19.1

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      ..|+|.|.||+|||++++.+++.+..
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~l~~   31 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHERLPG   31 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHHSTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            46899999999999999999987754

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=91.90  E-value=0.079  Score=45.68  Aligned_cols=28  Identities=21%  Similarity=0.662  Sum_probs=23.0

Q ss_pred             heeecccCCceeeeeeccCcccCCccCCCCCCC
Q psy17703        287 AFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTN  319 (720)
Q Consensus       287 ~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~  319 (720)
                      .-|+|.+||+.+     ...+..|..||.|++.
T Consensus        66 ~p~~C~~CG~~F-----~~~~~kPsrCP~CkSe   93 (105)
T 2gmg_A           66 KPAQCRKCGFVF-----KAEINIPSRCPKCKSE   93 (105)
T ss_dssp             CCCBBTTTCCBC-----CCCSSCCSSCSSSCCC
T ss_pred             ECcChhhCcCee-----cccCCCCCCCcCCCCC
Confidence            458999999996     3456789999999974

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=91.86  E-value=0.17  Score=50.42  Aligned_cols=23  Identities=13%  Similarity=-0.076  Sum_probs=17.9

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      .=++++|+||+|||+++..++..
T Consensus        13 ~i~litG~mGsGKTT~ll~~~~r   35 (223)
T 2b8t_A           13 WIEFITGPMFAGKTAELIRRLHR   35 (223)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHHH
Confidence            34778999999999977665553

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=91.85  E-value=0.075  Score=50.64  Aligned_cols=25  Identities=16%  Similarity=0.369  Sum_probs=22.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..|+|.|+||+|||++++.+++.+.
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~~~   28 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEKYG   28 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999988654

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=91.72  E-value=0.085  Score=49.20  Aligned_cols=24  Identities=25%  Similarity=0.144  Sum_probs=21.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .|+|.|.||+|||++++.+++.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~   25 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN   25 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999998654

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=91.71  E-value=0.083  Score=51.09  Aligned_cols=26  Identities=23%  Similarity=0.411  Sum_probs=22.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...|+|+|+||+|||++++.+++.+.
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~l~   45 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEKLG   45 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999998654

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=91.70  E-value=0.088  Score=51.76  Aligned_cols=26  Identities=23%  Similarity=0.414  Sum_probs=23.1

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...|+|+|+||+|||++++.+++.+.
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l~   29 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERFH   29 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46799999999999999999998664

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=91.68  E-value=0.079  Score=51.31  Aligned_cols=25  Identities=24%  Similarity=0.310  Sum_probs=22.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..|+|.|+||+|||++++.+++.++
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            4689999999999999999998765

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=91.68  E-value=0.076  Score=51.47  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=22.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .-.+.|+|++|+|||++++.+++.++
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35688999999999999999998763

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=91.53  E-value=0.089  Score=50.78  Aligned_cols=25  Identities=20%  Similarity=0.385  Sum_probs=22.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      ...+.|+|++|+|||++++.+++..
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            3468899999999999999999877

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=91.47  E-value=0.086  Score=50.69  Aligned_cols=24  Identities=21%  Similarity=0.311  Sum_probs=21.8

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .|.|.|+||+|||++++.+++.+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            578999999999999999998765

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=91.47  E-value=0.084  Score=50.64  Aligned_cols=25  Identities=20%  Similarity=0.305  Sum_probs=22.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..|.|.|+||+|||++++.+++.+.
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~l~   37 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEKYG   37 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4699999999999999999998764

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=91.46  E-value=0.085  Score=50.46  Aligned_cols=26  Identities=19%  Similarity=0.279  Sum_probs=23.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...|.|.|+||+|||++++.+++.+.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~l~   34 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQKYG   34 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999998664

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=91.36  E-value=0.089  Score=54.44  Aligned_cols=26  Identities=31%  Similarity=0.562  Sum_probs=23.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...++|.|+||+|||++++.+++.++
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~~~~   58 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFEETQ   58 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35789999999999999999998765

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=91.36  E-value=0.095  Score=51.27  Aligned_cols=26  Identities=23%  Similarity=0.344  Sum_probs=23.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      .-+.|+||+|+|||++++.+++..+.
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            45889999999999999999988764

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=91.32  E-value=0.1  Score=51.69  Aligned_cols=25  Identities=20%  Similarity=0.414  Sum_probs=22.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..|+|.|+||+|||++++.+++.+.
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~~l~   32 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITTHFE   32 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            5799999999999999999998664

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=91.31  E-value=0.09  Score=51.77  Aligned_cols=26  Identities=12%  Similarity=0.341  Sum_probs=23.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...|+|.|+||+|||++++.+++.+.
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999998765

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=91.30  E-value=0.11  Score=50.44  Aligned_cols=27  Identities=19%  Similarity=0.256  Sum_probs=23.6

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...-|.|+|+||+|||++++.+++.++
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            456789999999999999999998764

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=91.29  E-value=0.096  Score=51.49  Aligned_cols=24  Identities=17%  Similarity=0.231  Sum_probs=21.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .|+|.||||+||++.++.+++...
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            588999999999999999998653

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=91.29  E-value=0.091  Score=49.93  Aligned_cols=25  Identities=16%  Similarity=0.263  Sum_probs=22.1

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..|+|.|+||+|||++++.+++.+.
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~l~   31 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3689999999999999999998654

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=90.94  E-value=0.11  Score=50.93  Aligned_cols=24  Identities=21%  Similarity=0.391  Sum_probs=21.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +|+|.|+||+|||++++.+++.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g   25 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYG   25 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999998654

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=90.92  E-value=0.086  Score=53.31  Aligned_cols=26  Identities=27%  Similarity=0.355  Sum_probs=23.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...++|.|+||+|||++++.+++.++
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            35799999999999999999998775

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=90.86  E-value=0.087  Score=52.86  Aligned_cols=24  Identities=17%  Similarity=0.398  Sum_probs=21.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      -.+.|+|+||+|||++++.+++.+
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999544

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=90.86  E-value=0.1  Score=51.97  Aligned_cols=26  Identities=19%  Similarity=0.263  Sum_probs=23.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..+|+|.|+||+|||++++.+++.+.
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            36899999999999999999998764

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=90.65  E-value=0.13  Score=49.59  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=22.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..|+|.|+||+|||++++.+++.+.
T Consensus        16 ~~I~l~G~~GsGKsT~~~~L~~~~g   40 (203)
T 1ukz_A           16 SVIFVLGGPGAGKGTQCEKLVKDYS   40 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4789999999999999999998764

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=90.61  E-value=0.11  Score=51.15  Aligned_cols=25  Identities=24%  Similarity=0.458  Sum_probs=22.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..|+|.|+||+|||++++.+++.+.
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l~   30 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEYG   30 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5799999999999999999998664

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=90.50  E-value=0.16  Score=49.01  Aligned_cols=25  Identities=36%  Similarity=0.600  Sum_probs=22.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      +|.|+||+|+|||+|++.+.+..|.
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~~   27 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYPD   27 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCC
Confidence            6899999999999999999887764

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=90.43  E-value=0.12  Score=50.86  Aligned_cols=25  Identities=20%  Similarity=0.240  Sum_probs=22.2

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..|.|+|+||+|||++++.+++.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~~g   30 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEALQ   30 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999998653

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=90.39  E-value=0.13  Score=51.07  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=21.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -|+|.||||+||++.++.+++...
T Consensus        31 iI~llGpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            478899999999999999998653

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=90.35  E-value=0.13  Score=54.10  Aligned_cols=23  Identities=13%  Similarity=0.226  Sum_probs=20.2

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      ..++|+||||+|||+|+..++..
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh
Confidence            35799999999999999999864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=90.34  E-value=0.13  Score=50.92  Aligned_cols=24  Identities=33%  Similarity=0.404  Sum_probs=21.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .|+|.|+||+|||++++.+++.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg   25 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYS   25 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999998654

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=90.23  E-value=0.13  Score=49.09  Aligned_cols=26  Identities=31%  Similarity=0.533  Sum_probs=23.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...|+|+|.||+|||++++.+++.+.
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            46799999999999999999998764

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=90.21  E-value=0.12  Score=50.04  Aligned_cols=26  Identities=15%  Similarity=0.105  Sum_probs=22.7

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...|.|.|+||+|||++++.+++.+.
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            35799999999999999999998653

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=90.19  E-value=0.18  Score=49.19  Aligned_cols=26  Identities=19%  Similarity=0.390  Sum_probs=23.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +--+.|+||+|+|||+|++.++.+.+
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            34577899999999999999999886

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=90.12  E-value=0.099  Score=52.58  Aligned_cols=26  Identities=15%  Similarity=0.167  Sum_probs=23.1

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...|+|.|+||+|||++++.+++.++
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~~~g   54 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKKSHC   54 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999987654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=90.10  E-value=0.14  Score=46.96  Aligned_cols=23  Identities=17%  Similarity=0.400  Sum_probs=21.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|+||+|||+|++.+..
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~   27 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCK   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHc
Confidence            47899999999999999999875

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=90.06  E-value=0.16  Score=48.85  Aligned_cols=25  Identities=12%  Similarity=0.113  Sum_probs=22.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      ...|.|.|+||+|||++++.+++.+
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999999876

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=90.05  E-value=0.14  Score=49.49  Aligned_cols=21  Identities=29%  Similarity=0.368  Sum_probs=19.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .|.|+|++|+|||++++.+++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            588999999999999999998

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=90.02  E-value=0.15  Score=48.58  Aligned_cols=23  Identities=22%  Similarity=0.341  Sum_probs=20.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      .|.|.|.||+|||++++.+++.+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999865

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=90.01  E-value=0.16  Score=48.11  Aligned_cols=26  Identities=27%  Similarity=0.514  Sum_probs=22.7

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .++|+++|+||+|||+|++++....+
T Consensus        14 ~~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           14 NFKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            57999999999999999998876543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=89.99  E-value=0.52  Score=46.76  Aligned_cols=26  Identities=23%  Similarity=0.364  Sum_probs=22.7

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      ..++|+|+|++|+|||+|++.+....
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCC
Confidence            45799999999999999999998643

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=89.98  E-value=0.14  Score=51.94  Aligned_cols=24  Identities=29%  Similarity=0.497  Sum_probs=21.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      ..|+|+|.||+|||++++.+++.+
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~L   28 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKIL   28 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999864

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=89.97  E-value=0.15  Score=46.64  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=20.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|+||+|||+|++.+..
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHc
Confidence            46899999999999999988875

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=89.95  E-value=0.15  Score=49.57  Aligned_cols=25  Identities=28%  Similarity=0.460  Sum_probs=22.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -.+.|+||+|+|||+|++.+.+..+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCc
Confidence            4688999999999999999998765

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=89.80  E-value=0.14  Score=47.14  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=20.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|+||+|||+|++.+..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            47899999999999999999875

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=89.77  E-value=0.17  Score=49.52  Aligned_cols=24  Identities=25%  Similarity=0.266  Sum_probs=21.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      --+.|+||+|+|||+|++.++...
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            357899999999999999998754

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=89.76  E-value=0.18  Score=47.96  Aligned_cols=24  Identities=21%  Similarity=0.371  Sum_probs=22.1

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..++|+++|+||+|||+|++.+..
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHc
Confidence            568999999999999999999876

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=89.67  E-value=0.16  Score=46.61  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=20.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|++|+|||+|++.+..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            36899999999999999998875

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=89.66  E-value=0.27  Score=45.17  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=21.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      .++|+++|++|+|||+|++.+...-
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCC
Confidence            4789999999999999999987643

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=89.65  E-value=0.14  Score=47.20  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.9

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ++|+++|+||+|||+|++.+..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999998864

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=89.64  E-value=0.15  Score=49.57  Aligned_cols=25  Identities=20%  Similarity=0.117  Sum_probs=22.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      ...|.|.|+||+|||++++.+++.+
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3579999999999999999999865

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=89.63  E-value=0.15  Score=47.24  Aligned_cols=23  Identities=35%  Similarity=0.551  Sum_probs=20.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .+.|+++|+||+|||+|++.+..
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCccHHHHHHHHhc
Confidence            46899999999999999998864

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=89.63  E-value=0.19  Score=47.12  Aligned_cols=25  Identities=28%  Similarity=0.355  Sum_probs=22.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      --+.|+||.|+|||+|++.++..+|
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l~   58 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCC
Confidence            3578999999999999999999874

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=89.59  E-value=0.18  Score=46.27  Aligned_cols=22  Identities=23%  Similarity=0.308  Sum_probs=19.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ++|+++|++|+|||+|++.+..
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            4789999999999999998865

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=89.58  E-value=0.16  Score=46.70  Aligned_cols=23  Identities=43%  Similarity=0.582  Sum_probs=20.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|+||+|||+|++.+..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            36899999999999999998875

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=89.57  E-value=0.16  Score=46.73  Aligned_cols=24  Identities=17%  Similarity=0.285  Sum_probs=21.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      .++|+++|++|+|||+|++.+...
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            478999999999999999988753

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=89.49  E-value=0.16  Score=49.10  Aligned_cols=21  Identities=24%  Similarity=0.352  Sum_probs=19.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .|.|.|+||+|||++++.+++
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999987

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=89.49  E-value=0.17  Score=46.26  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=20.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|++|+|||+|++.+..
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~   26 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHh
Confidence            47899999999999999999875

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=89.42  E-value=0.17  Score=46.59  Aligned_cols=22  Identities=36%  Similarity=0.484  Sum_probs=19.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHH
Q psy17703        345 EINILLCGDPGTSKSQLLSYVY  366 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va  366 (720)
                      .+.|+++|+||+|||+|++.+.
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHC
T ss_pred             eEEEEEECCCCCCHHHHHHHHc
Confidence            3689999999999999999875

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=89.38  E-value=0.13  Score=50.06  Aligned_cols=27  Identities=26%  Similarity=0.369  Sum_probs=23.7

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...-+.|+|++|+|||+|++.++..++
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            345788999999999999999998875

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=89.33  E-value=0.2  Score=48.88  Aligned_cols=25  Identities=20%  Similarity=0.417  Sum_probs=22.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      --+.|+||+|+|||+|++.+.+..|
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4688999999999999999998876

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=89.33  E-value=0.18  Score=46.95  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=20.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|+||+|||+|++.+..
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            47899999999999999999875

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=89.33  E-value=0.18  Score=46.24  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=20.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|+||+|||+|++.+..
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            36899999999999999999875

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=89.32  E-value=0.16  Score=49.64  Aligned_cols=24  Identities=29%  Similarity=0.317  Sum_probs=20.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      --++|+|+||+|||+|++.++..+
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~~   47 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAKG   47 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHH
Confidence            357889999999999999998543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=89.27  E-value=0.2  Score=49.39  Aligned_cols=25  Identities=24%  Similarity=0.639  Sum_probs=22.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      --+.|+||+|+|||+|++.++...|
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~~p   48 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNEFP   48 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3578999999999999999999876

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=89.24  E-value=0.18  Score=45.95  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=21.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      .++|+++|++|+|||+|++.+...
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhC
Confidence            367999999999999999998753

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=89.18  E-value=0.19  Score=46.20  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=20.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|+||+|||+|++.+..
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHc
Confidence            47899999999999999998875

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=89.10  E-value=0.18  Score=48.34  Aligned_cols=24  Identities=38%  Similarity=0.498  Sum_probs=21.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      +.+.|+|++|+|||+|++.+....
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            679999999999999999998753

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=89.09  E-value=0.16  Score=48.04  Aligned_cols=19  Identities=26%  Similarity=0.405  Sum_probs=16.9

Q ss_pred             cEEEEcCCCCHHHHHHHHH
Q psy17703        347 NILLCGDPGTSKSQLLSYV  365 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~v  365 (720)
                      -+.|+|++|+|||+|++.+
T Consensus        11 i~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4789999999999999974

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=89.06  E-value=0.19  Score=47.35  Aligned_cols=23  Identities=35%  Similarity=0.462  Sum_probs=21.1

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|+||+|||+|++.+..
T Consensus        11 ~~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           11 LIKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            47999999999999999999875

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=89.05  E-value=0.19  Score=46.73  Aligned_cols=23  Identities=22%  Similarity=0.449  Sum_probs=20.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|+||+|||+|++.+..
T Consensus         6 ~~ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            6 QLKIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHG
T ss_pred             eEEEEEECcCCCCHHHHHHHHHh
Confidence            47899999999999999998875

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=89.03  E-value=0.2  Score=45.68  Aligned_cols=22  Identities=23%  Similarity=0.517  Sum_probs=19.8

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      +|+++|++|+|||+|++.+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999998763

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=89.01  E-value=0.19  Score=48.82  Aligned_cols=22  Identities=14%  Similarity=0.004  Sum_probs=19.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      --++|+|+||+|||+|+..++.
T Consensus        21 ~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           21 VLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999986

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=88.99  E-value=0.18  Score=47.65  Aligned_cols=24  Identities=17%  Similarity=0.284  Sum_probs=21.7

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      ..|.|+|++|+|||++++.+++.+
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~l   29 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEYL   29 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999865

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=88.98  E-value=0.16  Score=48.12  Aligned_cols=23  Identities=22%  Similarity=0.621  Sum_probs=20.1

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .+.|+|+|+||+|||+|++.+..
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            36799999999999999998875

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=88.95  E-value=0.22  Score=48.37  Aligned_cols=26  Identities=19%  Similarity=0.325  Sum_probs=22.8

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      ...+|+++|+||+|||+|+..+....
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45799999999999999999988644

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=88.93  E-value=0.25  Score=52.03  Aligned_cols=21  Identities=24%  Similarity=0.385  Sum_probs=18.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHH
Q psy17703        346 INILLCGDPGTSKSQLLSYVY  366 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va  366 (720)
                      +.|+++|+||+|||+|+..+.
T Consensus       166 ~kI~ivG~~~vGKSsLl~~l~  186 (329)
T 3o47_A          166 MRILMVGLDAAGKTTILYKLK  186 (329)
T ss_dssp             EEEEEEESTTSSHHHHHHHTC
T ss_pred             ceEEEECCCCccHHHHHHHHh
Confidence            479999999999999998774

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=88.83  E-value=0.2  Score=49.59  Aligned_cols=23  Identities=17%  Similarity=0.052  Sum_probs=20.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      --++|+||||+|||+|++.++..
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            46889999999999999999873

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=88.80  E-value=0.2  Score=46.62  Aligned_cols=24  Identities=21%  Similarity=0.504  Sum_probs=21.3

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..++|+++|++|+|||+|++.+..
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~   30 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVN   30 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHh
Confidence            357999999999999999988875

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=88.78  E-value=0.2  Score=46.44  Aligned_cols=24  Identities=29%  Similarity=0.372  Sum_probs=21.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      .++|+++|++|+|||+|++.+...
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            479999999999999999998763

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=88.71  E-value=0.23  Score=49.19  Aligned_cols=27  Identities=19%  Similarity=0.282  Sum_probs=23.5

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      +--+.|+||.|+|||+|++.++...|.
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~~~p   42 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKTQPL   42 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence            346789999999999999999998863

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=88.69  E-value=0.25  Score=45.47  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=21.4

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..++|+++|++|+|||+|+..+..
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            357999999999999999998864

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=88.54  E-value=0.17  Score=51.82  Aligned_cols=25  Identities=28%  Similarity=0.523  Sum_probs=22.7

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .++.|+||+|+|||+|++.++...+
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5789999999999999999998764

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=88.51  E-value=0.18  Score=48.89  Aligned_cols=25  Identities=16%  Similarity=0.196  Sum_probs=22.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .-+.|.|++|+|||++++.++..++
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4588999999999999999998764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=88.46  E-value=0.21  Score=47.08  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=20.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      ++|+++|+||+|||+|++.+...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCc
Confidence            47899999999999999988753

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=88.43  E-value=0.22  Score=47.28  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=21.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|+||+|||+|++.+..
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~   47 (193)
T 2oil_A           25 VFKVVLIGESGVGKTNLLSRFTR   47 (193)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhc
Confidence            47999999999999999998875

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=88.43  E-value=0.2  Score=46.95  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=20.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|+||+|||+|++.+..
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHc
Confidence            57899999999999999988865

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=88.40  E-value=0.21  Score=46.34  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=20.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      ..+.|+|+||+|||+|++.+...
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999999753

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=88.39  E-value=0.21  Score=48.77  Aligned_cols=26  Identities=23%  Similarity=0.221  Sum_probs=23.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...|+|+|+||+|||++++.+++.++
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45789999999999999999998764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=88.35  E-value=0.27  Score=45.71  Aligned_cols=24  Identities=17%  Similarity=0.223  Sum_probs=21.6

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ....|+++|++|+|||+|++.+..
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            467999999999999999999875

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=88.33  E-value=0.79  Score=45.97  Aligned_cols=24  Identities=33%  Similarity=0.510  Sum_probs=21.7

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..++|+|+|+||+|||+|+..+..
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~   44 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILR   44 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHhC
Confidence            458999999999999999999875

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=88.31  E-value=0.13  Score=56.54  Aligned_cols=48  Identities=15%  Similarity=0.212  Sum_probs=31.4

Q ss_pred             CcceeeccCCccchhhhhhhh-cC--------CCCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        320 HCFSLVHNRSHFTDKQLVRLQ-ET--------PAEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       320 ~~~~~~~~~s~~~d~Q~iklQ-E~--------pg~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..|.+..+.+.|.+...+.-+ +.        +..-=.++.|+||+|||+++...+.
T Consensus       127 ~~~~v~~~t~l~~~~~~l~~l~~~~~~~~~~~~~~~v~~I~G~aGsGKTt~I~~~~~  183 (446)
T 3vkw_A          127 RRVAVSSESVVYSDMAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVN  183 (446)
T ss_dssp             EEEEEEGGGSCCHHHHHHHHHHTTCBTTBCCCCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred             cEEEEECCchhhccHHHHHHHHHHHhhhccccccccEEEEEcCCCCCHHHHHHHHhc
Confidence            345566666667766656333 22        1222457899999999999987765

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=88.27  E-value=0.26  Score=46.65  Aligned_cols=25  Identities=20%  Similarity=0.351  Sum_probs=22.4

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      ....|+++|++|+|||+|+..+...
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4689999999999999999998764

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=88.26  E-value=0.27  Score=46.52  Aligned_cols=25  Identities=16%  Similarity=0.246  Sum_probs=22.2

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      ..++|+++|++|+|||+|++++...
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3589999999999999999998764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=88.26  E-value=0.23  Score=46.14  Aligned_cols=23  Identities=13%  Similarity=0.385  Sum_probs=20.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|++|+|||+|++.+..
T Consensus        14 ~~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           14 KFKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            47999999999999999998874

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=88.19  E-value=0.23  Score=46.22  Aligned_cols=25  Identities=20%  Similarity=0.263  Sum_probs=22.0

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      ..++|+++|++|+|||+|++.+...
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            4579999999999999999988764

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=88.18  E-value=0.22  Score=51.28  Aligned_cols=23  Identities=30%  Similarity=0.258  Sum_probs=20.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      .|+|.|+||+|||++++.+++..
T Consensus         4 ~I~l~G~~GsGKST~a~~L~~~~   26 (301)
T 1ltq_A            4 IILTIGCPGSGKSTWAREFIAKN   26 (301)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58999999999999999999754

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=88.17  E-value=0.17  Score=50.71  Aligned_cols=26  Identities=19%  Similarity=0.212  Sum_probs=23.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...+.|.|+||+|||++++.+++.+.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~lg   34 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARALG   34 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999998664

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=88.16  E-value=0.24  Score=46.18  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=21.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|++|+|||+|++.+..
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~   32 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKD   32 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            57999999999999999998875

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=88.10  E-value=0.24  Score=46.23  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=20.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|++|+|||+|++.+..
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~   34 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVK   34 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHc
Confidence            47899999999999999998875

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=88.09  E-value=0.24  Score=46.52  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=21.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|+||+|||+|++.+..
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~   26 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQ   26 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHh
Confidence            47899999999999999999875

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=88.08  E-value=0.29  Score=62.03  Aligned_cols=24  Identities=17%  Similarity=0.141  Sum_probs=20.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      ..+|++||||||||+|+.+++...
T Consensus      1083 ~~~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A         1083 RIVEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCChHHHHHHHHHHh
Confidence            359999999999999999988643

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=88.05  E-value=0.24  Score=46.40  Aligned_cols=24  Identities=25%  Similarity=0.472  Sum_probs=21.4

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..++|+++|++|+|||+|++.+..
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~   40 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQ   40 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            357999999999999999998875

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=88.03  E-value=0.24  Score=46.41  Aligned_cols=24  Identities=25%  Similarity=0.498  Sum_probs=21.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      ...|.|+|+||+|||+|++.+...
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999999864

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=88.01  E-value=0.26  Score=51.83  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=22.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .|+|+||||+|||++++.+++.++
T Consensus         7 ~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            7 AIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            689999999999999999999875

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=88.00  E-value=0.22  Score=46.27  Aligned_cols=23  Identities=39%  Similarity=0.559  Sum_probs=20.5

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|+||+|||+|++.+..
T Consensus         9 ~~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B            9 LFKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            47999999999999999998853

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=87.96  E-value=0.26  Score=46.68  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=21.7

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ...+|+++|++|+|||+|++.+..
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            468999999999999999999875

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=87.92  E-value=0.25  Score=47.20  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=21.5

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..++|+++|++|+|||+|++.+..
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~   36 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMY   36 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHh
Confidence            457999999999999999998875

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=87.92  E-value=0.29  Score=52.70  Aligned_cols=26  Identities=19%  Similarity=0.240  Sum_probs=22.6

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      ..-.++|+||||+|||+|++.+++..
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            34578999999999999999999864

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=87.91  E-value=0.35  Score=46.19  Aligned_cols=25  Identities=36%  Similarity=0.428  Sum_probs=22.1

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +.+.|+|++|+|||+|++.+.....
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~~~   54 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRNEF   54 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCC
Confidence            6899999999999999999987543

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=87.88  E-value=0.24  Score=46.69  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=21.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .+.|+++|+||+|||+|++.+..
T Consensus         7 ~~ki~v~G~~~vGKSsli~~l~~   29 (184)
T 1m7b_A            7 KCKIVVVGDSQCGKTALLHVFAK   29 (184)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHhc
Confidence            47899999999999999998875

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=87.86  E-value=0.28  Score=45.74  Aligned_cols=23  Identities=26%  Similarity=0.219  Sum_probs=21.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|++|+|||+|++.+..
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~   30 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTS   30 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            58999999999999999988875

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=87.85  E-value=0.24  Score=50.13  Aligned_cols=26  Identities=15%  Similarity=0.163  Sum_probs=23.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .-.|.|+|+||+|||++++.+++.+.
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            45799999999999999999998664

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=87.83  E-value=0.25  Score=46.41  Aligned_cols=23  Identities=35%  Similarity=0.501  Sum_probs=20.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|++|+|||+|++.+..
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~   32 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIE   32 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            47999999999999999998875

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=87.75  E-value=0.21  Score=46.63  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=20.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .+.|+++|+||+|||+|++.+..
T Consensus         7 ~~ki~~vG~~~vGKTsli~~l~~   29 (178)
T 2iwr_A            7 ELRLGVLGDARSGKSSLIHRFLT   29 (178)
T ss_dssp             EEEEEEECCGGGCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            47899999999999999998875

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=87.71  E-value=0.23  Score=52.86  Aligned_cols=25  Identities=24%  Similarity=0.615  Sum_probs=22.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .+++|+|+||+|||++++.+++.+.
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhC
Confidence            4799999999999999999998764

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=87.69  E-value=0.25  Score=47.52  Aligned_cols=24  Identities=17%  Similarity=0.160  Sum_probs=21.8

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .|.|.|+||+|||++++.+++.++
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            588999999999999999998765

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=87.69  E-value=0.21  Score=50.43  Aligned_cols=26  Identities=19%  Similarity=0.201  Sum_probs=22.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...|.|.|++|+|||++++.+++.+.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~Lg   52 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESLN   52 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence            35799999999999999999997664

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=87.65  E-value=0.26  Score=47.30  Aligned_cols=24  Identities=25%  Similarity=0.338  Sum_probs=21.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      ...|.|.|+||+|||++++.+++.
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            357999999999999999999986

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=87.64  E-value=0.28  Score=49.31  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=21.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            477999999999999999998765

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=87.64  E-value=0.27  Score=46.87  Aligned_cols=24  Identities=29%  Similarity=0.493  Sum_probs=21.8

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..++|+++|++|+|||+|++.+..
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~   50 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLT   50 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            468999999999999999998876

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=87.61  E-value=0.23  Score=49.27  Aligned_cols=24  Identities=29%  Similarity=0.290  Sum_probs=20.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            467899999999999999987664

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=87.57  E-value=0.27  Score=45.96  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=21.1

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|++|+|||+|++.+..
T Consensus        18 ~~ki~v~G~~~~GKSsli~~l~~   40 (187)
T 2a9k_A           18 LHKVIMVGSGGVGKSALTLQFMY   40 (187)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Confidence            57999999999999999999875

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=87.56  E-value=0.2  Score=49.60  Aligned_cols=25  Identities=12%  Similarity=0.202  Sum_probs=15.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHH-hhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVY-DLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va-~~~pr  371 (720)
                      -+.|+||+|+|||++++.++ ...|.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~~~~   54 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQKNN   54 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC----C
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCCCC
Confidence            47899999999999999999 87753

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=87.50  E-value=0.26  Score=47.65  Aligned_cols=23  Identities=26%  Similarity=0.638  Sum_probs=21.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      .+.|+|++|+|||+|++.++...
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            47899999999999999999876

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=87.45  E-value=0.27  Score=46.39  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=21.1

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|++|+|||+|+..+..
T Consensus        21 ~~ki~vvG~~~~GKSsli~~l~~   43 (190)
T 3con_A           21 EYKLVVVGAGGVGKSALTIQLIQ   43 (190)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECcCCCCHHHHHHHHHc
Confidence            47999999999999999999875

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=87.45  E-value=0.27  Score=46.48  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|++|+|||+|++.+..
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~   44 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYAD   44 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHc
Confidence            47999999999999999998875

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=87.44  E-value=0.51  Score=45.11  Aligned_cols=24  Identities=21%  Similarity=0.494  Sum_probs=21.5

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      .++|+++|+||+|||+|++.+...
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            579999999999999999998764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=87.42  E-value=0.27  Score=46.63  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=20.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .+.|+++|++|+|||+|++.+..
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~   43 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLT   43 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHHh
Confidence            57999999999999999988765

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=87.38  E-value=0.58  Score=52.25  Aligned_cols=52  Identities=15%  Similarity=0.222  Sum_probs=44.6

Q ss_pred             CCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCC
Q psy17703        662 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDS  716 (720)
Q Consensus       662 ~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~  716 (720)
                      .++.++||+++++.+...+++++|+++.+++  +|....++.+. +++|+||.-.
T Consensus       110 ~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i--~G~~~~~~~~~-iI~ATN~lpe  161 (500)
T 3nbx_X          110 AEIVFLDEIWKAGPAILNTLLTAINERQFRN--GAHVEKIPMRL-LVAASNELPE  161 (500)
T ss_dssp             CSEEEEESGGGCCHHHHHHHHHHHHSSEEEC--SSSEEECCCCE-EEEEESSCCC
T ss_pred             ceeeeHHhHhhhcHHHHHHHHHHHHHHhccC--CCCcCCcchhh-hhhccccCCC
Confidence            3468999999999999999999999999988  78889999886 6777787543

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=87.38  E-value=0.27  Score=46.25  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ...|.|+|++|+|||+|++.+..
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999875

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=87.33  E-value=0.39  Score=45.46  Aligned_cols=23  Identities=43%  Similarity=0.538  Sum_probs=20.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|++|+|||+|++.+..
T Consensus        16 ~~ki~v~G~~~~GKSsli~~l~~   38 (196)
T 3tkl_A           16 LFKLLLIGDSGVGKSCLLLRFAD   38 (196)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHc
Confidence            47999999999999999999875

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=87.29  E-value=0.28  Score=46.54  Aligned_cols=24  Identities=21%  Similarity=0.358  Sum_probs=20.8

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..+.|+++|++|+|||+|++.+..
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhc
Confidence            458999999999999999976654

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=87.27  E-value=0.31  Score=49.01  Aligned_cols=26  Identities=19%  Similarity=0.261  Sum_probs=23.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...|.|.|+||+|||++++.+++.+.
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            35799999999999999999998764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=87.24  E-value=0.29  Score=46.57  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=21.5

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..++|+++|+||+|||+|++.+..
T Consensus        22 ~~~ki~~vG~~~~GKSsl~~~l~~   45 (194)
T 3reg_A           22 KALKIVVVGDGAVGKTCLLLAFSK   45 (194)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhc
Confidence            358999999999999999998875

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=87.20  E-value=0.28  Score=46.95  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.7

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|+||+|||+|++.+..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Confidence            36899999999999999998875

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=87.15  E-value=0.29  Score=46.36  Aligned_cols=23  Identities=17%  Similarity=0.327  Sum_probs=21.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|++|+|||+|++.+..
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHc
Confidence            58999999999999999999875

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=87.12  E-value=0.16  Score=49.32  Aligned_cols=24  Identities=21%  Similarity=0.212  Sum_probs=21.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -|.|.|++|+|||++++.+++.+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            378999999999999999998764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=87.11  E-value=0.28  Score=45.85  Aligned_cols=23  Identities=22%  Similarity=0.189  Sum_probs=20.7

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|+||+|||+|++.+..
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHc
Confidence            47899999999999999998874

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=87.10  E-value=0.29  Score=46.27  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=20.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|++|+|||+|++.+..
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHc
Confidence            47999999999999999998865

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=87.08  E-value=0.27  Score=49.19  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=21.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .+.|+||.|+|||+|++.++.+.+
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            578999999999999999987665

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=87.08  E-value=0.28  Score=48.55  Aligned_cols=22  Identities=32%  Similarity=0.397  Sum_probs=18.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      --++|.|+||+|||+|+..++.
T Consensus        24 ~~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           24 NVVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999876654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=87.06  E-value=0.29  Score=46.47  Aligned_cols=24  Identities=21%  Similarity=0.307  Sum_probs=21.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      .+.|+++|++|+|||+|++.+...
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcC
Confidence            579999999999999999988764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=87.03  E-value=0.53  Score=44.67  Aligned_cols=24  Identities=29%  Similarity=0.474  Sum_probs=21.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      .++|+++|++|+|||+|++.+...
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            579999999999999999998763

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=87.00  E-value=0.3  Score=46.11  Aligned_cols=24  Identities=38%  Similarity=0.535  Sum_probs=21.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      .++|+++|+||+|||+|++.+...
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            479999999999999999998753

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=86.97  E-value=0.3  Score=50.93  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=22.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      +-.+.|+||+|+|||+|++.+++..
T Consensus       126 Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          126 KNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhhhc
Confidence            4468899999999999999999876

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=86.95  E-value=0.29  Score=47.00  Aligned_cols=23  Identities=39%  Similarity=0.507  Sum_probs=20.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|+||+|||+|++.+..
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            47899999999999999998875

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=86.89  E-value=0.28  Score=46.13  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.5

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..++|+++|+||+|||+|++.+..
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhc
Confidence            468999999999999999998864

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=86.87  E-value=0.31  Score=46.26  Aligned_cols=23  Identities=35%  Similarity=0.455  Sum_probs=20.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|++|+|||+|++.+..
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~   43 (191)
T 2a5j_A           21 LFKYIIIGDTGVGKSCLLLQFTD   43 (191)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhc
Confidence            47999999999999999998875

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=86.82  E-value=0.3  Score=46.83  Aligned_cols=24  Identities=13%  Similarity=0.142  Sum_probs=21.6

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..++|+++|++|+|||+|++.+..
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~   46 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVE   46 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHh
Confidence            357999999999999999999875

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=86.77  E-value=0.33  Score=45.72  Aligned_cols=25  Identities=20%  Similarity=0.361  Sum_probs=21.8

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      ....|+++|++|+|||+|++.+...
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcC
Confidence            4578999999999999999988753

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=86.69  E-value=0.33  Score=46.25  Aligned_cols=23  Identities=22%  Similarity=0.313  Sum_probs=20.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ...|+++|+||+|||+|++.+..
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            57999999999999999998875

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=86.63  E-value=0.32  Score=46.53  Aligned_cols=25  Identities=28%  Similarity=0.397  Sum_probs=21.6

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      ..++|+++|++|+|||+|++.+...
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhC
Confidence            3589999999999999999988753

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=86.61  E-value=0.33  Score=45.86  Aligned_cols=24  Identities=17%  Similarity=0.239  Sum_probs=21.6

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..++|+++|++|+|||+|++.+..
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            468999999999999999998874

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=86.57  E-value=0.29  Score=46.01  Aligned_cols=24  Identities=17%  Similarity=0.239  Sum_probs=21.2

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..++|+++|++|+|||+|++.+..
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~   43 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSM   43 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Confidence            358999999999999999999875

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=86.56  E-value=0.29  Score=50.44  Aligned_cols=23  Identities=17%  Similarity=0.127  Sum_probs=20.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      -++|.|+||+|||+|++.++..+
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~~   59 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQW   59 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998765

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=86.52  E-value=0.34  Score=46.34  Aligned_cols=24  Identities=29%  Similarity=0.396  Sum_probs=21.0

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..+.|+++|++|+|||+|++++..
T Consensus        19 ~~~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           19 SKPRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             -CCEEEEEESTTSSHHHHHHHHHS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            468999999999999999998765

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=86.49  E-value=0.31  Score=48.13  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=20.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            467899999999999999987664

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=86.45  E-value=0.32  Score=54.58  Aligned_cols=27  Identities=15%  Similarity=0.452  Sum_probs=24.1

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      .-+++++||+|+|||++++++...+++
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i~~  286 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFIPP  286 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            446999999999999999999998864

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=86.37  E-value=0.31  Score=47.61  Aligned_cols=27  Identities=22%  Similarity=0.287  Sum_probs=23.2

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .+.-|+|.||||+|||+|+..+++...
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            356799999999999999999987654

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=86.35  E-value=0.33  Score=48.07  Aligned_cols=21  Identities=29%  Similarity=0.494  Sum_probs=18.2

Q ss_pred             ccEEEEcCCCCHHHHHHHHHH
Q psy17703        346 INILLCGDPGTSKSQLLSYVY  366 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va  366 (720)
                      --+++.|+||+|||+|+..++
T Consensus        31 ~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           31 TTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHH
Confidence            468899999999999987765

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=86.35  E-value=0.32  Score=48.35  Aligned_cols=27  Identities=22%  Similarity=0.348  Sum_probs=23.8

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...-|.|.|+||+|||++++.+++.++
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            346789999999999999999998775

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=86.34  E-value=0.35  Score=49.26  Aligned_cols=26  Identities=27%  Similarity=0.363  Sum_probs=22.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +-.++++||+|+|||++++.++...+
T Consensus        25 g~~v~i~Gp~GsGKSTll~~l~g~~~   50 (261)
T 2eyu_A           25 MGLILVTGPTGSGKSTTIASMIDYIN   50 (261)
T ss_dssp             SEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCccHHHHHHHHHHhCC
Confidence            34699999999999999999998763

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=86.28  E-value=0.36  Score=51.04  Aligned_cols=26  Identities=31%  Similarity=0.330  Sum_probs=23.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      ..|+|+||+|+|||+|+..+++.++.
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l~~   66 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHFPL   66 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHCCC
Confidence            46899999999999999999998763

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=86.24  E-value=0.25  Score=46.29  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=20.4

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHH
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVY  366 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va  366 (720)
                      ..++|+++|+||+|||+|+..+.
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CccEEEEECCCCCCHHHHHHHHh
Confidence            46899999999999999998764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=86.20  E-value=0.32  Score=49.35  Aligned_cols=24  Identities=25%  Similarity=0.458  Sum_probs=21.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            477899999999999999987665

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=86.19  E-value=0.35  Score=46.23  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.3

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .+.|+|+|+||+|||+|+..+..
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            36799999999999999988874

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=86.19  E-value=0.22  Score=46.64  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=10.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|+||+|||+|++.+..
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEEEECCCCC-----------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            47899999999999999988753

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=86.11  E-value=0.32  Score=49.52  Aligned_cols=24  Identities=29%  Similarity=0.373  Sum_probs=21.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            467899999999999999987665

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=86.11  E-value=0.35  Score=46.48  Aligned_cols=24  Identities=42%  Similarity=0.573  Sum_probs=21.1

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..++|+++|+||+|||+|+..+..
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            358999999999999999998874

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=86.04  E-value=0.35  Score=46.14  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=21.0

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..++|+++|++|+|||+|++.+..
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHh
Confidence            468999999999999999998864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=86.00  E-value=0.33  Score=46.62  Aligned_cols=23  Identities=35%  Similarity=0.476  Sum_probs=20.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|++|+|||+|++.+..
T Consensus        25 ~~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           25 LFKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            47999999999999999998864

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=85.99  E-value=0.33  Score=48.94  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=21.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999987664

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=85.98  E-value=0.36  Score=45.54  Aligned_cols=24  Identities=33%  Similarity=0.443  Sum_probs=21.1

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ....|+++|+||+|||+|++.+..
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~   38 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLAS   38 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhc
Confidence            468999999999999999998853

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=85.96  E-value=0.32  Score=51.34  Aligned_cols=27  Identities=22%  Similarity=0.767  Sum_probs=23.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      +-.++++|++|+|||+|++.++...++
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g~~~~  197 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIMEFIPK  197 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGGGSCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence            347999999999999999999988764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=85.95  E-value=0.31  Score=47.46  Aligned_cols=24  Identities=33%  Similarity=0.578  Sum_probs=21.4

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..++|+++|++|+|||+|++.+..
T Consensus        33 ~~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           33 RSVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHc
Confidence            458999999999999999998874

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=85.94  E-value=0.35  Score=46.83  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=21.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .+.|+++|++|+|||+|++.+..
T Consensus        28 ~~ki~vvG~~~vGKSsLi~~l~~   50 (205)
T 1gwn_A           28 KCKIVVVGDSQCGKTALLHVFAK   50 (205)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhc
Confidence            57999999999999999999876

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=85.92  E-value=0.36  Score=46.70  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=20.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .+.|+++|++|+|||+|++.+..
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~   48 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQ   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            47999999999999999998875

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=85.87  E-value=0.35  Score=50.51  Aligned_cols=24  Identities=21%  Similarity=0.137  Sum_probs=21.7

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      -.++++|++|+|||+|++.+++.+
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~   54 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINEL   54 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhc
Confidence            489999999999999999998865

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=85.84  E-value=0.34  Score=46.92  Aligned_cols=23  Identities=35%  Similarity=0.486  Sum_probs=20.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|++|+|||+|++.+..
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHhc
Confidence            47999999999999999998874

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=85.80  E-value=0.34  Score=48.65  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=21.9

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -.+.|+||.|+|||+|++.++.+.+
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           29 SIIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3578999999999999999987765

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=85.79  E-value=0.35  Score=46.04  Aligned_cols=23  Identities=22%  Similarity=0.559  Sum_probs=20.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|++|+|||+|++.+..
T Consensus        26 ~~ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           26 KLQVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc
Confidence            47899999999999999998854

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=85.77  E-value=0.35  Score=46.84  Aligned_cols=26  Identities=12%  Similarity=0.130  Sum_probs=22.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..-+.|.|++|+|||++++.++..++
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~~~~   47 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQTLR   47 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45689999999999999999998663

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=85.76  E-value=0.38  Score=46.98  Aligned_cols=22  Identities=27%  Similarity=0.332  Sum_probs=20.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..|.|.|++|+|||++++.+++
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999987

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=85.72  E-value=0.39  Score=50.01  Aligned_cols=25  Identities=32%  Similarity=0.240  Sum_probs=22.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -.++++|++|+|||+|++.+++..+
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~   56 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERP   56 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcC
Confidence            5899999999999999999988763

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=85.71  E-value=0.35  Score=48.13  Aligned_cols=24  Identities=21%  Similarity=0.397  Sum_probs=21.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+.|+||.|+|||+|++.++...+
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            578999999999999999987664

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=85.70  E-value=0.36  Score=49.33  Aligned_cols=25  Identities=20%  Similarity=0.064  Sum_probs=21.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      +--++|+|+||+|||+|+..++..+
T Consensus        30 G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           30 GTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3458899999999999999998644

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=85.70  E-value=0.39  Score=51.26  Aligned_cols=27  Identities=26%  Similarity=0.514  Sum_probs=23.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      +-.++|+|++|+|||+|++.+++..+.
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~~~~~~  201 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALMQEIPF  201 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            457999999999999999999987653

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=85.66  E-value=0.35  Score=48.47  Aligned_cols=24  Identities=33%  Similarity=0.415  Sum_probs=21.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            477999999999999999987664

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=85.62  E-value=0.4  Score=46.68  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=21.3

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..+.|+++|++|+|||+|++.+..
T Consensus        26 ~~~ki~vvG~~~vGKSsL~~~l~~   49 (214)
T 3q3j_B           26 ARCKLVLVGDVQCGKTAMLQVLAK   49 (214)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhc
Confidence            578999999999999999998865

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=85.57  E-value=0.35  Score=49.64  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=21.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~~   59 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGILK   59 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCC
Confidence            477999999999999999987665

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=85.56  E-value=0.36  Score=49.27  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=21.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCCC
Confidence            467899999999999999987664

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=85.53  E-value=0.26  Score=49.38  Aligned_cols=25  Identities=28%  Similarity=0.339  Sum_probs=21.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      --+.|+||.|+|||+|++.++.+.+
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           32 ALVAVVGQVGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3578999999999999999986654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=85.52  E-value=0.37  Score=45.95  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=20.6

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHH
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVY  366 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va  366 (720)
                      ..++|+++|+||+|||+|++.+.
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLK   50 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CccEEEEECCCCCCHHHHHHHHH
Confidence            46899999999999999999874

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=85.52  E-value=0.36  Score=48.79  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=21.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .+.|+||.|+|||+|++.++.+.+
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            578999999999999999987654

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=85.48  E-value=0.47  Score=44.76  Aligned_cols=24  Identities=17%  Similarity=0.213  Sum_probs=21.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -.+|+|+.|+|||+|++++..++.
T Consensus        28 ~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHc
Confidence            457999999999999999998775

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=85.40  E-value=0.42  Score=46.13  Aligned_cols=25  Identities=16%  Similarity=0.194  Sum_probs=20.9

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      ..+.|+++|++|+|||+|+..+...
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3579999999999999999988753

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=85.37  E-value=0.3  Score=52.11  Aligned_cols=27  Identities=30%  Similarity=0.498  Sum_probs=23.5

Q ss_pred             CCCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        343 PAEINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       343 pg~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +++ .++++||+|+|||++++.++...+
T Consensus       122 ~~g-~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          122 PRG-LVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             SSE-EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCC-EEEEECCCCCCHHHHHHHHHhccc
Confidence            344 899999999999999999998764

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=85.28  E-value=0.4  Score=45.46  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=21.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      .++|+++|++|+|||+|++.+...
T Consensus        18 ~~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           18 MLKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            479999999999999999988753

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=85.24  E-value=0.42  Score=46.05  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.1

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..++|+++|++|+|||+|++.+..
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHh
Confidence            468999999999999999988874

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=85.20  E-value=0.38  Score=49.25  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=21.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            578999999999999999987664

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=85.20  E-value=0.36  Score=51.46  Aligned_cols=24  Identities=13%  Similarity=0.086  Sum_probs=21.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      --++|+||||+|||+|+..++..+
T Consensus        62 ~i~~I~GppGsGKSTLal~la~~~   85 (356)
T 3hr8_A           62 RIVEIFGQESSGKTTLALHAIAEA   85 (356)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999988754

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=85.15  E-value=0.42  Score=50.84  Aligned_cols=25  Identities=24%  Similarity=0.278  Sum_probs=21.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      +--+.|+||||+|||+|++.++...
T Consensus       131 G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          131 QAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3468899999999999999998765

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=85.13  E-value=0.33  Score=46.55  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=19.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHH
Q psy17703        345 EINILLCGDPGTSKSQLLSYVY  366 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va  366 (720)
                      .+.|+++|+||+|||+|++.+.
T Consensus        23 ~~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           23 IFKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEEEECCCCCCHHHHHHHHH
Confidence            4799999999999999999874

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=85.12  E-value=0.38  Score=48.79  Aligned_cols=24  Identities=25%  Similarity=0.328  Sum_probs=21.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            477899999999999999987664

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=85.11  E-value=0.41  Score=45.89  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=21.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|++|+|||+|++.+..
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~   47 (201)
T 2gco_A           25 RKKLVIVGDGACGKTCLLIVFSK   47 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            47899999999999999998876

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=85.10  E-value=0.41  Score=46.16  Aligned_cols=23  Identities=22%  Similarity=0.222  Sum_probs=20.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .+.|+++|+||+|||+|++.+..
T Consensus         9 ~~ki~i~G~~~~GKTsli~~l~~   31 (212)
T 2j0v_A            9 FIKCVTVGDGAVGKTCMLICYTS   31 (212)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            57999999999999999988875

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=85.07  E-value=0.52  Score=50.27  Aligned_cols=26  Identities=15%  Similarity=0.241  Sum_probs=23.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      -.+.|+|++|+|||+|++.+++..+.
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~gl~~~  196 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAAVFNT  196 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            46889999999999999999998753

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=85.07  E-value=0.41  Score=46.01  Aligned_cols=23  Identities=17%  Similarity=0.325  Sum_probs=20.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .+.|+++|+||+|||+|++.+..
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhh
Confidence            47999999999999999998865

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=84.98  E-value=0.45  Score=46.04  Aligned_cols=24  Identities=25%  Similarity=0.267  Sum_probs=21.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      ..|.|+|.+|+|||++++.+++.+
T Consensus        13 ~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           13 MVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            468899999999999999999864

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=84.95  E-value=0.4  Score=48.58  Aligned_cols=24  Identities=25%  Similarity=0.389  Sum_probs=21.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            477999999999999999988765

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=84.93  E-value=0.39  Score=49.38  Aligned_cols=24  Identities=29%  Similarity=0.463  Sum_probs=21.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            477999999999999999987765

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=84.92  E-value=0.35  Score=45.78  Aligned_cols=24  Identities=17%  Similarity=0.333  Sum_probs=20.7

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..++|+++|++|+|||+|++.+..
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~   43 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKP   43 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            368999999999999999988754

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=84.81  E-value=0.35  Score=50.64  Aligned_cols=27  Identities=22%  Similarity=0.224  Sum_probs=23.5

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      ..-+.|.|++|+|||+|++.++..++.
T Consensus        90 g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           90 PFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCchHHHHHHHHHhhccc
Confidence            456889999999999999999998754

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=84.72  E-value=0.39  Score=49.01  Aligned_cols=24  Identities=25%  Similarity=0.410  Sum_probs=21.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCCC
Confidence            477999999999999999987664

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=84.70  E-value=0.44  Score=45.95  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=20.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|++|+|||+|++.+..
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHhc
Confidence            46899999999999999998875

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=84.68  E-value=0.41  Score=48.78  Aligned_cols=24  Identities=38%  Similarity=0.632  Sum_probs=21.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~~   58 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLIE   58 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            477899999999999999987664

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=84.61  E-value=1.1  Score=46.41  Aligned_cols=24  Identities=29%  Similarity=0.510  Sum_probs=21.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      .+.|+|+|+||+|||+|++.+...
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            468999999999999999987653

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=84.54  E-value=0.44  Score=51.96  Aligned_cols=26  Identities=27%  Similarity=0.207  Sum_probs=23.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      -.++++||+|+|||++++++...++.
T Consensus       168 gii~I~GpnGSGKTTlL~allg~l~~  193 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQELNS  193 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhcCC
Confidence            36899999999999999999997753

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=84.53  E-value=0.42  Score=48.57  Aligned_cols=23  Identities=22%  Similarity=0.489  Sum_probs=20.7

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      ++|.|+|+||+|||+|++.+...
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            68999999999999999999754

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=84.25  E-value=0.51  Score=50.33  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=21.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      -+.|+||.|+|||+|++.++.+.++
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~~p   67 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLERP   67 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCC
Confidence            4678899999999999999987753

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=84.24  E-value=0.41  Score=55.31  Aligned_cols=19  Identities=26%  Similarity=0.494  Sum_probs=15.1

Q ss_pred             cEEEEcCCCCHHHHHHHHH
Q psy17703        347 NILLCGDPGTSKSQLLSYV  365 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~v  365 (720)
                      -.|+.||||||||+.+-.+
T Consensus       207 ~~lI~GPPGTGKT~ti~~~  225 (646)
T 4b3f_X          207 LAIIHGPPGTGKTTTVVEI  225 (646)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHH
Confidence            4689999999999865443

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=84.20  E-value=0.5  Score=50.46  Aligned_cols=25  Identities=20%  Similarity=0.369  Sum_probs=21.8

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      -+.|+||.|+|||+|++.++.+.++
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~~p   56 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFEQP   56 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCCC
Confidence            4678999999999999999987753

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=84.19  E-value=0.48  Score=46.28  Aligned_cols=23  Identities=43%  Similarity=0.575  Sum_probs=20.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|+++|++|+|||+|++.+..
T Consensus        13 ~~ki~v~G~~~vGKSsli~~l~~   35 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKSNLLSRFTK   35 (223)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECcCCCCHHHHHHHHhc
Confidence            47999999999999999998875

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=84.15  E-value=0.42  Score=52.11  Aligned_cols=24  Identities=21%  Similarity=0.236  Sum_probs=21.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      .-|+|+|+||+|||++++.+++.+
T Consensus       259 ~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          259 EVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhc
Confidence            468899999999999999987644

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=84.08  E-value=0.44  Score=45.76  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=20.8

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ....|+++|+||+|||+|++.+..
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            357899999999999999998853

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=84.07  E-value=0.5  Score=50.21  Aligned_cols=24  Identities=17%  Similarity=0.346  Sum_probs=21.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCccHHHHHHHHHcCCC
Confidence            467889999999999999998765

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=84.00  E-value=0.47  Score=47.43  Aligned_cols=25  Identities=20%  Similarity=0.299  Sum_probs=22.2

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .-+-|.|+.|+|||++++.++..++
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~~lG   50 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIMELLG   50 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4588999999999999999998763

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=83.92  E-value=0.53  Score=50.25  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=21.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      -+.|+||.|+|||+|++.++.+.++
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~p   55 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIYKP   55 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEEcCCCchHHHHHHHHHCCCCC
Confidence            4678899999999999999987753

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=83.91  E-value=0.48  Score=44.87  Aligned_cols=24  Identities=17%  Similarity=0.540  Sum_probs=21.0

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ...+|+++|++|+|||+|++.+..
T Consensus        16 ~~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           16 TKLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            457999999999999999998854

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=83.90  E-value=0.45  Score=48.36  Aligned_cols=24  Identities=25%  Similarity=0.480  Sum_probs=20.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      --+.|+||.|+|||+|++.++.+.
T Consensus        47 e~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           47 TTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhccC
Confidence            357899999999999999997654

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=83.89  E-value=0.39  Score=51.58  Aligned_cols=26  Identities=27%  Similarity=0.363  Sum_probs=22.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .-.++++||+|+|||++++.+++..+
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            34699999999999999999998764

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=83.86  E-value=0.56  Score=49.63  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=22.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -|.|.||+|+|||++++.+++.++
T Consensus         9 lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            9 LIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             eEEEECCCcCcHHHHHHHHHHHcC
Confidence            588999999999999999999876

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=83.85  E-value=0.37  Score=45.51  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=20.5

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHH
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVY  366 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va  366 (720)
                      ..++|+++|+||+|||+|+..+.
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~   43 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLH   43 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            46899999999999999998773

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=83.79  E-value=0.58  Score=48.85  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=22.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .-+++.||+|+|||+|+..+++.++
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~~~   35 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKILP   35 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCccCHHHHHHHHHHhCC
Confidence            3578999999999999999999876

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=83.61  E-value=0.55  Score=50.18  Aligned_cols=25  Identities=28%  Similarity=0.352  Sum_probs=21.8

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      -+.|+||.|+|||+|++.++.+.++
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~p   55 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIYKP   55 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCCC
Confidence            4678899999999999999987753

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=83.46  E-value=0.42  Score=46.89  Aligned_cols=24  Identities=17%  Similarity=0.065  Sum_probs=21.2

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      |+ -+.|+||.|+|||+|++.++.+
T Consensus        22 Ge-~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           22 NT-IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             CS-EEEEECCTTSSTTHHHHHHHHH
T ss_pred             CC-EEEEECCCCCCHHHHHHHHhcC
Confidence            44 4778999999999999999988

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=83.42  E-value=0.57  Score=50.40  Aligned_cols=25  Identities=28%  Similarity=0.406  Sum_probs=21.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      -+.|+||.|+|||+|++.++.+.++
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~~p   55 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLETI   55 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEEcCCCchHHHHHHHHHcCCCC
Confidence            3668999999999999999987753

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=83.39  E-value=0.57  Score=50.27  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=21.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      -+.|+||.|+|||+|++.++.+.++
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~~p   63 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLEEP   63 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCCC
Confidence            4678899999999999999988753

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=83.31  E-value=0.58  Score=50.22  Aligned_cols=25  Identities=24%  Similarity=0.351  Sum_probs=21.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      -+.|+||.|+|||+|++.++.+.++
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~~p   55 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLEEP   55 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCCC
Confidence            4678899999999999999988753

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=83.24  E-value=0.64  Score=45.25  Aligned_cols=25  Identities=32%  Similarity=0.341  Sum_probs=22.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..|.|.|+||+|||++++.+++.+.
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~g   28 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASELS   28 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4689999999999999999998764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=83.15  E-value=0.54  Score=47.59  Aligned_cols=23  Identities=22%  Similarity=0.431  Sum_probs=20.7

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .+.|+|+|+||+|||+|+..+..
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHC
Confidence            46899999999999999999875

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=83.11  E-value=0.61  Score=48.79  Aligned_cols=25  Identities=8%  Similarity=0.109  Sum_probs=22.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      -|++.||+|+|||+|+..+++.++.
T Consensus         5 ~i~i~GptgsGKt~la~~La~~~~~   29 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKRLNG   29 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred             EEEEECCCcCCHHHHHHHHHHhCcc
Confidence            4789999999999999999997753

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=83.09  E-value=0.55  Score=50.90  Aligned_cols=21  Identities=33%  Similarity=0.172  Sum_probs=18.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHH
Q psy17703        346 INILLCGDPGTSKSQLLSYVY  366 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va  366 (720)
                      --++|+||||+|||+|+..++
T Consensus       179 ei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          179 SITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEEcCCCCChHHHHHHHH
Confidence            358999999999999999665

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=83.07  E-value=0.56  Score=46.51  Aligned_cols=26  Identities=19%  Similarity=0.217  Sum_probs=22.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ...|.|.|+||+|||++++.+++.+.
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~~lg   41 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAKDFG   41 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            45799999999999999999998654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=83.02  E-value=0.52  Score=46.29  Aligned_cols=24  Identities=29%  Similarity=0.503  Sum_probs=21.3

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ....|+++|++|+|||+|+..+..
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            457999999999999999998864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=82.88  E-value=0.51  Score=50.28  Aligned_cols=25  Identities=16%  Similarity=0.270  Sum_probs=21.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      -+.|+||.|+|||+|++.++.+.++
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~~p   57 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLDVP   57 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCC
Confidence            4678899999999999999987653

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=82.86  E-value=0.55  Score=48.19  Aligned_cols=23  Identities=22%  Similarity=0.210  Sum_probs=20.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ...|.|.|+||+|||++++.+++
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999985

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=82.84  E-value=2  Score=41.45  Aligned_cols=25  Identities=28%  Similarity=0.428  Sum_probs=18.4

Q ss_pred             CceeeccccccCChHHHHHHHHHHH
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVME  434 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE  434 (720)
                      -.+++|||+.-++++....+.++.+
T Consensus        82 ~dvViIDEaqfl~~~~v~~l~~l~~  106 (191)
T 1xx6_A           82 TEVIAIDEVQFFDDEIVEIVNKIAE  106 (191)
T ss_dssp             CSEEEECSGGGSCTHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4699999999998776655555443

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=82.81  E-value=0.55  Score=48.87  Aligned_cols=25  Identities=20%  Similarity=0.208  Sum_probs=22.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .-+.|.|++|+|||+|++.++..++
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4588999999999999999998765

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=82.74  E-value=0.59  Score=45.79  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.3

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .+.|+|+|+||+|||+|+..+..
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            36899999999999999988763

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=82.68  E-value=0.52  Score=48.98  Aligned_cols=24  Identities=25%  Similarity=0.566  Sum_probs=20.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      ...|+|+|++|+|||+|++.++..
T Consensus        18 ~~~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           18 EFTLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCC
Confidence            468899999999999999998764

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=82.57  E-value=0.57  Score=49.08  Aligned_cols=25  Identities=24%  Similarity=0.199  Sum_probs=21.1

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      .--++|+|+||+|||+|+..++..+
T Consensus       107 G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          107 RTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHhHHHHHHHHHH
Confidence            3468999999999999999887643

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=82.54  E-value=0.5  Score=49.24  Aligned_cols=25  Identities=16%  Similarity=0.208  Sum_probs=22.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      --+.|+|++|+|||++++.++...+
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lagll~  127 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGRYYQ  127 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHH
Confidence            4688899999999999999998764

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=82.51  E-value=0.93  Score=51.51  Aligned_cols=25  Identities=16%  Similarity=0.191  Sum_probs=22.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..|+|.|.||+|||++++.+++.+.
T Consensus       397 ~~I~l~GlsGSGKSTiA~~La~~L~  421 (573)
T 1m8p_A          397 FTIFLTGYMNSGKDAIARALQVTLN  421 (573)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEeecCCCCCHHHHHHHHHHHhc
Confidence            5799999999999999999998764

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=82.31  E-value=0.63  Score=49.26  Aligned_cols=24  Identities=21%  Similarity=0.012  Sum_probs=20.7

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      .--++|+|+||+|||+|+..++..
T Consensus       122 G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          122 MAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999988864

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=82.31  E-value=1.5  Score=42.44  Aligned_cols=23  Identities=22%  Similarity=0.180  Sum_probs=18.9

Q ss_pred             cEEEEcCCCCHHH-HHHHHHHhhC
Q psy17703        347 NILLCGDPGTSKS-QLLSYVYDLV  369 (720)
Q Consensus       347 ~vLL~G~PGtGKS-~ll~~va~~~  369 (720)
                      =.+++|+.|+||| .|++++.+..
T Consensus        22 l~fiyG~MgsGKTt~Ll~~i~n~~   45 (195)
T 1w4r_A           22 IQVILGPMFSGKSTELMRRVRRFQ   45 (195)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHH
Confidence            3578999999999 7888887743

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=82.31  E-value=0.38  Score=46.26  Aligned_cols=25  Identities=20%  Similarity=0.336  Sum_probs=21.2

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      ....+.|+|++|+|||+|++.+...
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3578999999999999999987643

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=82.21  E-value=0.6  Score=49.63  Aligned_cols=23  Identities=13%  Similarity=0.050  Sum_probs=19.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      --++|+|+||+|||+|+..++..
T Consensus        62 ~iv~I~G~pGsGKTtLal~la~~   84 (349)
T 2zr9_A           62 RVIEIYGPESSGKTTVALHAVAN   84 (349)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999998888753

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=82.19  E-value=0.67  Score=45.59  Aligned_cols=23  Identities=13%  Similarity=0.385  Sum_probs=19.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ...|+|+|++|+|||+|+..+..
T Consensus        13 ~~KivlvGd~~VGKTsLi~r~~~   35 (216)
T 4dkx_A           13 KFKLVFLGEQSVGKTSLITRFMY   35 (216)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEEECcCCcCHHHHHHHHHh
Confidence            46799999999999999987653

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=82.18  E-value=0.5  Score=44.81  Aligned_cols=24  Identities=13%  Similarity=0.353  Sum_probs=21.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .+.|+|++|+|||+|++.+.+..+
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            367999999999999999998764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=82.15  E-value=0.65  Score=45.24  Aligned_cols=25  Identities=20%  Similarity=0.319  Sum_probs=21.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      ...|.++|++|+|||+|+..++...
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4679999999999999998888654

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=82.00  E-value=0.3  Score=46.65  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=6.1

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      .++|+++|++|+|||+|++.+...
T Consensus        20 ~~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           20 RCKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEEC-----------------
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            479999999999999999887643

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=81.97  E-value=0.62  Score=48.60  Aligned_cols=24  Identities=17%  Similarity=0.126  Sum_probs=20.5

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      .--++|+|+||+|||+|+..++..
T Consensus        98 g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           98 QSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999988753

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=81.91  E-value=0.61  Score=47.67  Aligned_cols=24  Identities=25%  Similarity=0.472  Sum_probs=21.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      ...|.|+|+||+|||+|++.+...
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCC
Confidence            357999999999999999999753

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=81.82  E-value=0.63  Score=45.19  Aligned_cols=54  Identities=9%  Similarity=0.126  Sum_probs=37.6

Q ss_pred             Cceeecccccc------CChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhh
Q psy17703        410 SGVCCIDEFDK------MSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLL  483 (720)
Q Consensus       410 ~gI~~IDEidk------m~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLl  483 (720)
                      -.++++||+.-      ++.+   .++++++++             |.+..+|-|.|                .-|+.|+
T Consensus       121 yDlvILDEi~~al~~g~l~~~---ev~~~l~~R-------------p~~~~vIlTGr----------------~ap~~l~  168 (196)
T 1g5t_A          121 LDMVVLDELTYMVAYDYLPLE---EVISALNAR-------------PGHQTVIITGR----------------GCHRDIL  168 (196)
T ss_dssp             CSEEEEETHHHHHHTTSSCHH---HHHHHHHTS-------------CTTCEEEEECS----------------SCCHHHH
T ss_pred             CCEEEEeCCCccccCCCCCHH---HHHHHHHhC-------------cCCCEEEEECC----------------CCcHHHH
Confidence            36899999943      4443   356666533             45667777777                4679999


Q ss_pred             ccceeEEEecCC
Q psy17703        484 SRFDLIFLLLDP  495 (720)
Q Consensus       484 sRFdli~~l~d~  495 (720)
                      ..-|++-.+...
T Consensus       169 e~AD~VTem~~v  180 (196)
T 1g5t_A          169 DLADTVSELRPV  180 (196)
T ss_dssp             HHCSEEEECCCS
T ss_pred             HhCcceeeecce
Confidence            999998887653

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=81.73  E-value=0.78  Score=43.72  Aligned_cols=24  Identities=25%  Similarity=0.466  Sum_probs=21.4

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ++.-+||.|++|+|||+++..+.+
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            467899999999999999988876

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=81.47  E-value=0.75  Score=43.64  Aligned_cols=28  Identities=21%  Similarity=0.747  Sum_probs=21.9

Q ss_pred             heeecccCCceeeeeeccCcccCCccCCCCCCCCc
Q psy17703        287 AFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHC  321 (720)
Q Consensus       287 ~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~  321 (720)
                      ..|+|+.||+...     +  ..|..||.|+....
T Consensus       137 ~~~~C~~CG~i~~-----~--~~p~~CP~Cg~~~~  164 (170)
T 3pwf_A          137 KVYICPICGYTAV-----D--EAPEYCPVCGAPKE  164 (170)
T ss_dssp             CEEECTTTCCEEE-----S--CCCSBCTTTCCBGG
T ss_pred             CeeEeCCCCCeeC-----C--CCCCCCCCCCCCHH
Confidence            5799999999875     1  36779999997543

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=81.44  E-value=0.76  Score=44.89  Aligned_cols=27  Identities=26%  Similarity=0.675  Sum_probs=21.7

Q ss_pred             heeecccCCceeeeeeccCcccCCccCCCCCCCC
Q psy17703        287 AFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNH  320 (720)
Q Consensus       287 ~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~  320 (720)
                      ..|+|..||+...     |  ..|..||.|+...
T Consensus       170 ~~~~C~~CG~i~~-----g--~~p~~CP~C~~~k  196 (202)
T 1yuz_A          170 KFHLCPICGYIHK-----G--EDFEKCPICFRPK  196 (202)
T ss_dssp             CEEECSSSCCEEE-----S--SCCSBCTTTCCBG
T ss_pred             cEEEECCCCCEEc-----C--cCCCCCCCCCCCh
Confidence            4799999998854     2  5789999999753

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=81.41  E-value=0.63  Score=47.39  Aligned_cols=22  Identities=27%  Similarity=0.697  Sum_probs=20.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHH
Q psy17703        345 EINILLCGDPGTSKSQLLSYVY  366 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va  366 (720)
                      .++|+++|+||+|||+|+..+.
T Consensus         8 ~~~I~vvG~~g~GKSTLin~L~   29 (274)
T 3t5d_A            8 EFTLMVVGESGLGKSTLINSLF   29 (274)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHh
Confidence            5799999999999999998874

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=81.36  E-value=0.7  Score=47.15  Aligned_cols=23  Identities=26%  Similarity=0.517  Sum_probs=21.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .++|.|+|+||+|||+|+.++..
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g   25 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTG   25 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC
Confidence            47899999999999999999865

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=81.34  E-value=0.7  Score=46.72  Aligned_cols=22  Identities=27%  Similarity=0.520  Sum_probs=19.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      +|.|+|+||+|||+|+.++...
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            6899999999999999998653

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=81.30  E-value=0.55  Score=45.57  Aligned_cols=24  Identities=17%  Similarity=0.332  Sum_probs=21.3

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..+.|+++|++|+|||+|+..+..
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~   51 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCN   51 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTT
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhC
Confidence            457999999999999999998865

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=81.27  E-value=0.73  Score=44.74  Aligned_cols=25  Identities=16%  Similarity=0.376  Sum_probs=21.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      -..++++|+||+|||+|+..++..+
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999888754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=81.25  E-value=0.55  Score=51.27  Aligned_cols=35  Identities=31%  Similarity=0.436  Sum_probs=25.9

Q ss_pred             hhhhhhcCCCCc-cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        335 QLVRLQETPAEI-NILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       335 Q~iklQE~pg~i-~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      +.+.+.=.+|.+ ++.|+|++|+|||+|++.++...
T Consensus        31 ~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           31 QLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             HHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             CCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            344443334654 69999999999999999998763

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=81.17  E-value=0.68  Score=47.83  Aligned_cols=26  Identities=23%  Similarity=0.360  Sum_probs=23.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..-|.|.|++|+|||+|++.+++.++
T Consensus        31 ~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           31 PLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            45688999999999999999998775

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=81.16  E-value=0.65  Score=48.41  Aligned_cols=25  Identities=24%  Similarity=0.493  Sum_probs=21.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      --+.|+||.|+|||+|++.++++.+
T Consensus        81 e~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCchHHHHHHHHHcCCC
Confidence            4688999999999999999987664

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=81.09  E-value=0.72  Score=48.34  Aligned_cols=20  Identities=20%  Similarity=0.247  Sum_probs=16.9

Q ss_pred             EEEEcCCCCHHHHHHHHHHh
Q psy17703        348 ILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~  367 (720)
                      +++.||||+|||+|+-.++.
T Consensus        31 teI~G~pGsGKTtL~Lq~~~   50 (333)
T 3io5_A           31 LILAGPSKSFKSNFGLTMVS   50 (333)
T ss_dssp             EEEEESSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999655543

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=81.06  E-value=0.69  Score=48.12  Aligned_cols=25  Identities=20%  Similarity=0.258  Sum_probs=21.9

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      --+.|+|+.|+|||++++.++..++
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag~l~  125 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAHRLK  125 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999998763

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=81.06  E-value=0.75  Score=46.35  Aligned_cols=22  Identities=27%  Similarity=0.157  Sum_probs=19.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      -+.|+||.|+|||+|++.++.+
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999865

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=81.03  E-value=0.72  Score=48.43  Aligned_cols=25  Identities=20%  Similarity=0.161  Sum_probs=22.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .-+.|.|++|+|||++++.+..++.
T Consensus        93 ~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           93 YIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4688999999999999999998775

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=80.98  E-value=0.71  Score=47.06  Aligned_cols=22  Identities=23%  Similarity=0.211  Sum_probs=19.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      -+.|+||.|+|||+|++.++.+
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=80.97  E-value=0.67  Score=47.18  Aligned_cols=23  Identities=26%  Similarity=0.564  Sum_probs=20.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      .+.|+||.|+|||+|++.++.+.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998755

>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}

Probab=80.94  E-value=1  Score=40.04  Aligned_cols=29  Identities=14%  Similarity=0.405  Sum_probs=22.1

Q ss_pred             hheeecccCCceeeeeeccCcccCCc-cCCCCCCCC
Q psy17703        286 EAFFRCIVCNYSTTVEIDRGRIHEPT-LCTNCSTNH  320 (720)
Q Consensus       286 ~~~f~C~~Cg~~~~~~~~~~~~~~p~-~C~~C~~~~  320 (720)
                      .+.|+|.+||++....      ..+. .||.|+...
T Consensus        71 p~~~~C~~CG~~~e~~------~~~~~~CP~Cgs~~  100 (119)
T 2kdx_A           71 KVELECKDCSHVFKPN------ALDYGVCEKCHSKN  100 (119)
T ss_dssp             CCEEECSSSSCEECSC------CSTTCCCSSSSSCC
T ss_pred             cceEEcCCCCCEEeCC------CCCCCcCccccCCC
Confidence            4579999999987652      2456 899999854

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=80.85  E-value=0.63  Score=53.49  Aligned_cols=38  Identities=18%  Similarity=0.205  Sum_probs=25.7

Q ss_pred             cchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        331 FTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       331 ~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      +-+.|.--++..-..-..++.||||||||+++..+...
T Consensus       181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~  218 (624)
T 2gk6_A          181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYH  218 (624)
T ss_dssp             CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHH
Confidence            44556654443223446899999999999987766553

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=80.74  E-value=0.7  Score=47.92  Aligned_cols=25  Identities=24%  Similarity=0.207  Sum_probs=21.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      --+.|+|++|+|||+|++.++...+
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             CeEEEECCCCCcHHHHHHHhccccc
Confidence            3578999999999999999987664

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=80.71  E-value=0.67  Score=47.90  Aligned_cols=25  Identities=20%  Similarity=0.356  Sum_probs=21.7

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      --+.|+||.|+|||+|++.++.+.+
T Consensus        65 e~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           65 QLLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCC
Confidence            3577899999999999999987765

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=80.69  E-value=0.71  Score=48.77  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=22.2

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      ..-+.|+|+||+|||+|++.++..+
T Consensus        55 g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           55 AIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhh
Confidence            4568899999999999999999765

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=80.61  E-value=1.3  Score=48.46  Aligned_cols=25  Identities=24%  Similarity=0.497  Sum_probs=22.2

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      +.+.+.|+|+||+|||+|++.+...
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCC
Confidence            4579999999999999999999764

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=80.56  E-value=0.88  Score=45.20  Aligned_cols=25  Identities=16%  Similarity=0.274  Sum_probs=22.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..|.+.|.+|+|||++++.+++.++
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            4588999999999999999999875

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=80.53  E-value=2.8  Score=41.31  Aligned_cols=28  Identities=25%  Similarity=0.306  Sum_probs=21.2

Q ss_pred             CCceeeccccccCChHHHHHHHHHHHhc
Q psy17703        409 DSGVCCIDEFDKMSDTTRSILHEVMEQQ  436 (720)
Q Consensus       409 d~gI~~IDEidkm~~~~~~~L~e~mE~~  436 (720)
                      +-.+++|||+.-++++....+.++.+.+
T Consensus       101 ~~dvV~IDEaQFf~~~~v~~l~~la~~g  128 (219)
T 3e2i_A          101 NVDVIGIDEVQFFDDEIVSIVEKLSADG  128 (219)
T ss_dssp             TCSEEEECCGGGSCTHHHHHHHHHHHTT
T ss_pred             CCCEEEEechhcCCHHHHHHHHHHHHCC
Confidence            3468999999999987777776665443

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=80.42  E-value=0.67  Score=50.53  Aligned_cols=25  Identities=24%  Similarity=0.505  Sum_probs=22.1

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      +.+|.|+|++|+|||+|++.++...
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCC
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCC
Confidence            4578999999999999999998754

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=80.41  E-value=0.81  Score=43.35  Aligned_cols=23  Identities=13%  Similarity=0.066  Sum_probs=20.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      -+.+.|++|+|||+++..++..+
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~~l   28 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVAAA   28 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            37799999999999999998765

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=80.39  E-value=0.75  Score=48.46  Aligned_cols=26  Identities=15%  Similarity=0.291  Sum_probs=22.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .--+.|+||+|+|||++++.++....
T Consensus       129 g~vi~lvG~nGaGKTTll~~Lag~l~  154 (328)
T 3e70_C          129 PYVIMFVGFNGSGKTTTIAKLANWLK  154 (328)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34688999999999999999998663

>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A

Probab=80.22  E-value=1.1  Score=43.29  Aligned_cols=29  Identities=31%  Similarity=0.812  Sum_probs=21.7

Q ss_pred             heeecccCCceeeeeeccCcccCCccCCCCCCCCc
Q psy17703        287 AFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHC  321 (720)
Q Consensus       287 ~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~  321 (720)
                      ..|+|+.||+...     | -..|..||.|+....
T Consensus       154 ~~~~C~~CG~~~~-----g-~~~p~~CP~C~~~k~  182 (191)
T 1lko_A          154 TKWRCRNCGYVHE-----G-TGAPELCPACAHPKA  182 (191)
T ss_dssp             EEEEETTTCCEEE-----E-EECCSBCTTTCCBGG
T ss_pred             ceEEECCCCCEee-----C-CCCCCCCCCCcCCHH
Confidence            4699999999864     1 145679999998544

>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*

Probab=80.18  E-value=0.81  Score=41.90  Aligned_cols=35  Identities=26%  Similarity=0.526  Sum_probs=23.1

Q ss_pred             hheeecccCCceeeeeec----------cCcccC-----CccCCCCCCCC
Q psy17703        286 EAFFRCIVCNYSTTVEID----------RGRIHE-----PTLCTNCSTNH  320 (720)
Q Consensus       286 ~~~f~C~~Cg~~~~~~~~----------~~~~~~-----p~~C~~C~~~~  320 (720)
                      .+.++|.+||++......          ...+.+     +..||.|+..+
T Consensus        68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~  117 (139)
T 3a43_A           68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHD  117 (139)
T ss_dssp             CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCC
T ss_pred             CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCc
Confidence            457999999998764320          011112     78899999854

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=80.82  E-value=0.37  Score=46.24  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=20.7

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..++|+++|+||+|||+|++.+..
T Consensus        29 ~~~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           29 QAIKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            368999999999999999977753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	720
d1ltla_	239	b.40.4.11 (A:) DNA replication initiator (cdc21/cd	4e-32
d1ltla_	239	b.40.4.11 (A:) DNA replication initiator (cdc21/cd	9e-14
d1g8pa_	333	c.37.1.20 (A:) ATPase subunit of magnesium chelata	1e-14
d1ny5a2	247	c.37.1.20 (A:138-384) Transcriptional activator si	0.002

>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 239

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: DNA replication initiator (cdc21/cdc54) N-terminal domain
domain: DNA replication initiator (cdc21/cdc54) N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score =  122 bits (307), Expect = 4e-32
 Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 15/170 (8%)

Query: 193 LNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLEHQIQVRPFNAKK 252
           + V+   L  FD  L   L+  P +VI      +      R         + +R      
Sbjct: 36  IEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNIDRLRK-----NVDLNIRFSGISN 90

Query: 253 TRNLRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTL 312
              LR L  + I + + ++G+V +T  I P + +A F C  C     V      I EP+L
Sbjct: 91  VIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAVTQSTNMITEPSL 150

Query: 313 CTNCSTNHCFSLVHNRSHFTDKQLVRLQE---------TPAEINILLCGD 353
           C+ C     F L+ + S F D Q ++LQE          P +I ++L  D
Sbjct: 151 CSECG-GRSFRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDD 199

>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 239

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: DNA replication initiator (cdc21/cdc54) N-terminal domain
domain: DNA replication initiator (cdc21/cdc54) N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 69.3 bits (169), Expect = 9e-14
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 1   MPAGQTPHSVVLFTYNDLVDSIQPGDRVTVTGIYRAVPLQVNPRMRSVKSVYKTHIDVV 59
           +  G+ P  + +   +DLVD++ PGD V VTG  R V  +   R +    +Y  + + +
Sbjct: 183 LSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVRDERTKRFK--NFIYGNYTEFL 239

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

 Score = 73.8 bits (180), Expect = 1e-14
 Identities = 47/301 (15%), Positives = 86/301 (28%), Gaps = 76/301 (25%)

Query: 347 NILLCGDPGTSKSQLLSYVYDLVP-----------------------------------R 371
            +L+ GD GT KS  +  +  L+P                                    
Sbjct: 30  GVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPV 89

Query: 372 SQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHE 431
                G     V     I +     +   + G L  A+ G   IDE + + D    +L +
Sbjct: 90  VDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLD 149

Query: 432 VMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFL 491
           V +     + + G+  +  AR  ++ + NP +              L   LL RF L   
Sbjct: 150 VAQSGENVVERDGLSIRHPARFVLVGSGNPEE------------GDLRPQLLDRFGLSVE 197

Query: 492 LLDPQSEQFDARLA-----------------RHLDITVLRDYIAYAQEHLSPTLSEEASQ 534
           +L P+  +    +                  R  D+ +    +   +          A  
Sbjct: 198 VLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALY 257

Query: 535 RLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRL---H 591
                 + +   G          R   +L+R + A A +  +  V    +     +   H
Sbjct: 258 DCAALCIALGSDG---------LRGELTLLRSARALAALEGATAVGRDHLKRVATMALSH 308

Query: 592 R 592
           R
Sbjct: 309 R 309

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 42/207 (20%), Positives = 72/207 (34%), Gaps = 26/207 (12%)

Query: 343 PAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYIT-------KDPET 395
            AE  +L+ G+ G  K  +   ++ L  RS+      + A               K   T
Sbjct: 21  CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFT 80

Query: 396 RQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSI 455
             +  + G   LAD G   +DE  ++S   ++ L  V+E             ++N R  I
Sbjct: 81  GAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVR--I 138

Query: 456 LAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRD 515
           LAA N         K ++   +    L  R  +I + + P  E       R  DI  L +
Sbjct: 139 LAATN------RNIKELVKEGKFREDLYYRLGVIEIEIPPLRE-------RKEDIIPLAN 185

Query: 516 YIAYAQEHLS----PTLSEEASQRLIQ 538
           +                ++ A + L+ 
Sbjct: 186 HFLKKFSRKYAKEVEGFTKSAQELLLS 212

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	720
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	99.96
d1ltla_	239	DNA replication initiator (cdc21/cdc54) N-terminal	99.93
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.51
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.5
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	99.4
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	99.29
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	99.28
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.27
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	99.26
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.25
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	99.22
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	99.21
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.2
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	99.13
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	99.13
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.09
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	99.07
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.93
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.92
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	98.82
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.81
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.71
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.69
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.65
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	98.59
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.49
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	98.38
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	98.26
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.24
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.24
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.16
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	97.97
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.86
d1tuea_	205	Replication protein E1 helicase domain {Human papi	97.69
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.59
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.59
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	96.59
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.56
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.32
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.28
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.27
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.26
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.04
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.53
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	95.49
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.33
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	95.32
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.27
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.19
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.13
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	95.1
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	95.08
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	94.97
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	94.94
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	94.88
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	94.73
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	94.55
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	94.36
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	94.35
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	94.2
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	94.12
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	94.1
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.04
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	93.78
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	93.7
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	93.66
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.6
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	93.56
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	93.54
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.33
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	92.95
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	92.62
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	92.52
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	92.41
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	92.2
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	92.06
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	91.92
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	91.9
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	91.75
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	91.48
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	91.47
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	91.36
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	91.29
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	90.79
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	90.75
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	90.61
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	90.61
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	90.51
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	90.47
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	90.43
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	90.39
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	90.36
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	90.29
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	90.25
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	90.2
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	90.18
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	90.18
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	90.07
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	90.04
d2fh5b1	207	Signal recognition particle receptor beta-subunit	90.04
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	90.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	89.99
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	89.91
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	89.88
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	89.78
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	89.73
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	89.63
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	89.62
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	89.61
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	89.53
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	89.44
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	89.42
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	89.38
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	89.34
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	89.21
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	89.19
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	89.15
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	89.1
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	89.09
d2gmga1	105	Hypothetical protein PF0610 {Pyrococcus furiosus [	89.09
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	89.05
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	89.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	88.99
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	88.97
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	88.91
d1nrjb_	209	Signal recognition particle receptor beta-subunit	88.9
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	88.79
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	88.68
d1lkoa2	44	Rubrerythrin, C-terminal domain {Desulfovibrio vul	88.66
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	88.55
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	88.46
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	88.46
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	88.42
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	88.39
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	88.22
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	88.22
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	88.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	87.95
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	87.83
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	87.71
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	87.61
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	87.59
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	87.5
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	87.23
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	87.08
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	87.02
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	86.91
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	86.82
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	86.66
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	86.57
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	86.38
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	86.31
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	86.11
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	86.02
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	85.98
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	85.8
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	85.76
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	85.73
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	85.69
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	85.59
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	85.39
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	85.35
d2awna2	232	Maltose transport protein MalK, N-terminal domain	85.33
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	85.26
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	85.17
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	85.15
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	84.98
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	84.93
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	84.61
d1okkd2	207	GTPase domain of the signal recognition particle r	84.3
d1g2912	240	Maltose transport protein MalK, N-terminal domain	84.1
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	84.07
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	83.98
d1j8yf2	211	GTPase domain of the signal sequence recognition p	83.95
d1ls1a2	207	GTPase domain of the signal sequence recognition p	83.85
d1vmaa2	213	GTPase domain of the signal recognition particle r	83.71
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	83.48
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	83.29
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	83.29
d2qy9a2	211	GTPase domain of the signal recognition particle r	83.06
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	83.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	82.9
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	82.84
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	82.75
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	82.71
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	82.64
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	82.57
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	82.17
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	82.04
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	82.0
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	81.64
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	81.01
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	80.94
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	80.02

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.96  E-value=6e-29  Score=265.38  Aligned_cols=227  Identities=20%  Similarity=0.249  Sum_probs=172.4

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCcc---------------------------------ccccccceee
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGS---------------------------------SAVGLTAYIT  390 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~s---------------------------------s~~glta~~~  390 (720)
                      +..|+||+||||||||+|++.++.++|......+...                                 +..++.+...
T Consensus        27 ~~h~vLl~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d  106 (333)
T d1g8pa_          27 GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD  106 (333)
T ss_dssp             GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC
T ss_pred             CCCeEEEECCCCccHHHHHHHHHHhCCCchhhccCccccCccccccchhhccccCcccccCceeeccCCCCcccccCcch
Confidence            5579999999999999999999999986543322111                                 1111111110


Q ss_pred             --cCccccceeeecceeeecCCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCC
Q psy17703        391 --KDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNT  468 (720)
Q Consensus       391 --~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~  468 (720)
                        .....|.+..++|.+.+||+||+|+||+++++++.+++|+++||+++++++++|....+|++|.++||+||++++   
T Consensus       107 ~~~~~~~g~~~~~~G~l~~A~~gvl~iDEi~~~~~~~~~aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~~~---  183 (333)
T d1g8pa_         107 IERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGD---  183 (333)
T ss_dssp             HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCC---
T ss_pred             hhhccccCcceeeccccccccccEeecccHHHHHHHHHHHHhhhhcCCeEEecccCceecCCCCEEEEEecCccccc---
Confidence              011236788999999999999999999999999999999999999999999999999999999999999999864   


Q ss_pred             CcccccccCCChhhhccceeEEEecCCChHHHHHHHHhhc----------------chhHHHHHHHHHHhh-cCCcchHH
Q psy17703        469 SKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHL----------------DITVLRDYIAYAQEH-LSPTLSEE  531 (720)
Q Consensus       469 ~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i----------------~~~~l~~~i~~ar~~-~~p~ls~e  531 (720)
                               +++++++|||+.+.+.++.+......+..+.                ....+++.+..+... ....++++
T Consensus       184 ---------l~~~llDRf~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~~  254 (333)
T d1g8pa_         184 ---------LRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNT  254 (333)
T ss_dssp             ---------CCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHH
T ss_pred             ---------cccchhhhhcceeeccCcchhhHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHHHHHHhhcccceecCHH
Confidence                     8999999999999999887655443333221                111223333333332 24456777


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHH
Q psy17703        532 ASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQDVDEAWRLH  591 (720)
Q Consensus       532 a~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~l~  591 (720)
                      ....+...+.++..         .++|....++|+|+++|+|++++.|+.+|+.+|+.+.
T Consensus       255 ~~~~~~~~~~~~~~---------~S~R~~~~llrvArtiA~L~gr~~V~~~di~~a~~lv  305 (333)
T d1g8pa_         255 ALYDCAALCIALGS---------DGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA  305 (333)
T ss_dssp             HHHHHHHHHHHSSS---------CSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC---------CChHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            77777766665543         2579999999999999999999999999999998863

>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: DNA replication initiator (cdc21/cdc54) N-terminal domain
domain: DNA replication initiator (cdc21/cdc54) N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.93  E-value=2.8e-26  Score=232.68  Aligned_cols=163  Identities=25%  Similarity=0.425  Sum_probs=145.1

Q ss_pred             hhHHHHHHHhc--CCcEEEEechhHhhhcHHHHHHHHhChhhHHHHHHHHHHHHHHhhCcccccccceEEEecCCccccc
Q psy17703        178 TDRRIRQIFSL--EDPVLNVNLAHLAKFDSQLCQQLVCYPQEVIPILDMGVNEYFFERHPAAVLEHQIQVRPFNAKKTRN  255 (720)
Q Consensus       178 ~~~~~r~~~~~--~~~~l~id~~~l~~~d~~L~~~l~~~P~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (720)
                      |...++++...  +..+|.|||.||..||++|++.|+++|.++++.|++|++++...     ....++++|+.|+|...+
T Consensus        19 y~~~i~~~~~~~~~~~sl~Vd~~~L~~~~~~L~~~l~~~P~~~l~~~~~ai~~~~~~-----~~~~~i~vr~~~~~~~~~   93 (239)
T d1ltla_          19 YKDRVFEAIEKYPNVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNIDRL-----RKNVDLNIRFSGISNVIP   93 (239)
T ss_dssp             HHHHHHHHHHHTTSCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHHHHTTTCTT-----CCCCCCEEEEECCSCBCC
T ss_pred             HHHHHHHHHHcCCCCcEEEEEHHHHHhhCHHHHHHHHHCHHHHHHHHHHHHHhHHhh-----ccCceEEEEEcCCCCccc
Confidence            34446665444  46799999999999999999999999999999999999875321     123468999999999999


Q ss_pred             cccCCCcCCCceEEEeeEEEEecccchhhhhheeecccCCceeeeeeccCcccCCccCCCCCCCCcceeeccCCccchhh
Q psy17703        256 LRHLNPEDIDQLITINGMVIRTSNIIPEMREAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCFSLVHNRSHFTDKQ  335 (720)
Q Consensus       256 ~r~l~~~~i~~lv~v~Giv~r~s~v~p~~~~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~~~~~~~~s~~~d~Q  335 (720)
                      +|+|+++++||||+|+|+|+|+|.|+|+++++.|+|..||+...+....+.+..|..|++|+. ++|.+.++.|+|.|||
T Consensus        94 ir~l~s~~igkLv~v~GiV~r~s~v~~~~~~~~~~C~~C~~~~~~~~~~~~~~~p~~C~~C~~-~~f~~~~~~s~~~d~Q  172 (239)
T d1ltla_          94 LRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAVTQSTNMITEPSLCSECGG-RSFRLLQDESEFLDTQ  172 (239)
T ss_dssp             GGGCCGGGTTSEEEEEEEEEEECCCEEEEEEEEEEETTTCCEEEEECSSSSCCCCSCCTTTCC-CCEEECGGGCEEEEEE
T ss_pred             hhccchhhhccEEEEEEEEEEeCCEEEEEEEEEEECCCCCceEEEEecCCeecCCccCCCCCC-cccEEccCcceEeeeE
Confidence            999999999999999999999999999999999999999999999998899999999999997 4699999999999999


Q ss_pred             hhhhhcCCCCc
Q psy17703        336 LVRLQETPAEI  346 (720)
Q Consensus       336 ~iklQE~pg~i  346 (720)
                      ++++||.|.++
T Consensus       173 ~i~iQE~~e~~  183 (239)
T d1ltla_         173 TLKLQEPLENL  183 (239)
T ss_dssp             EEEEECCSTTC
T ss_pred             EEEEecccccC
Confidence            99999998653

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.51  E-value=4.2e-13  Score=134.34  Aligned_cols=194  Identities=22%  Similarity=0.225  Sum_probs=130.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChH
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDT  424 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~  424 (720)
                      -|+||+||||||||++++.+++.+..... .++......+........             ...++.+++|||++++++.
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~~iDe~~~~~~~  102 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILAN-------------SLEEGDILFIDEIHRLSRQ  102 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHT-------------TCCTTCEEEEETGGGCCHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCccccchhhHHHHHh-------------hccCCCeeeeecccccchh
Confidence            48999999999999999999997654322 222221111111111100             1234679999999999999


Q ss_pred             HHHHHHHHHHhceEeeecc-----CeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHH
Q psy17703        425 TRSILHEVMEQQTLSIAKA-----GIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQ  499 (720)
Q Consensus       425 ~~~~L~e~mE~~~vsi~k~-----g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~  499 (720)
                      .+..++.+||...+.....     -....-+.++.+++++|...             ..+++.++|+...+.+..++.+.
T Consensus       103 ~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~  169 (239)
T d1ixsb2         103 AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG-------------LITAPLLSRFGIVEHLEYYTPEE  169 (239)
T ss_dssp             HHHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEEEEESCCS-------------SCSCGGGGGCSEEEECCCCCHHH
T ss_pred             HHHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEEEeeccCcc-------------cccchhhcccceeeEeeccChhh
Confidence            9999999999876654311     11233456788888887443             35567888998888888777654


Q ss_pred             HHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCC
Q psy17703        500 FDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETV  579 (720)
Q Consensus       500 ~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V  579 (720)
                      ....+.             .........+++++.+.++...             ...+|....+++.+...|.....+.|
T Consensus       170 ~~~i~~-------------~~~~~~~i~~~~~~l~~ia~~s-------------~gd~R~a~~~l~~~~~~a~~~~~~~I  223 (239)
T d1ixsb2         170 LAQGVM-------------RDARLLGVRITEEAALEIGRRS-------------RGTMRVAKRLFRRVRDFAQVAGEEVI  223 (239)
T ss_dssp             HHHHHH-------------HHHGGGCCCBCHHHHHHHHHHT-------------TSSHHHHHHHHHHHHHHHTTSCCSCB
T ss_pred             hhHHHH-------------HHHHHhCCccchHHHHHHHHHc-------------CCCHHHHHHHHHHHHHHHHHhCCCCc
Confidence            432222             2222345677788877776431             12458888888888888999999999


Q ss_pred             CHHhHHHHHHHH
Q psy17703        580 EVQDVDEAWRLH  591 (720)
Q Consensus       580 ~~~Dv~~Ai~l~  591 (720)
                      +.+++.+|+..+
T Consensus       224 t~~~~~~~l~~l  235 (239)
T d1ixsb2         224 TRERALEALAAL  235 (239)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHhhh
Confidence            999999997643

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.50  E-value=1.3e-13  Score=138.09  Aligned_cols=192  Identities=18%  Similarity=0.216  Sum_probs=127.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCCccccccccceeecCccccceeeeccee-eecCCceeeccccccCCh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGKGSSAVGLTAYITKDPETRQMVLQTGAL-VLADSGVCCIDEFDKMSD  423 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~~ss~~glta~~~~~~~~~~~~~~~G~l-~lad~gI~~IDEidkm~~  423 (720)
                      -|+||+||||||||++|+++++.+....+. ++....          ..  +..   .+.+ ....+.++++||++++.+
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~----------~~--~~~---~~~~~~~~~~~~~~ide~~~~~~  100 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV----------KQ--GDM---AAILTSLERGDVLFIDEIHRLNK  100 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC----------SH--HHH---HHHHHHCCTTCEEEEETGGGCCH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCCCcccccCcccc----------cH--HHH---HHHHHhhccCCchHHHHHHHhhh
Confidence            389999999999999999999977533221 111100          00  000   0000 112467899999999999


Q ss_pred             HHHHHHHHHHHhceEeee--ccCe---EEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChH
Q psy17703        424 TTRSILHEVMEQQTLSIA--KAGI---ICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSE  498 (720)
Q Consensus       424 ~~~~~L~e~mE~~~vsi~--k~g~---~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~  498 (720)
                      ..++.++..|+.+.+...  ..+.   ......++.+|+|+|...             .+++++++||+.++.+..++.+
T Consensus       101 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~at~~~~-------------~~~~~~~~r~~~~~~~~~~~~~  167 (238)
T d1in4a2         101 AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSG-------------LLSSPLRSRFGIILELDFYTVK  167 (238)
T ss_dssp             HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGG-------------GSCHHHHTTCSEEEECCCCCHH
T ss_pred             HHHhhcccceeeeeeeeeecCcccccccccCCCCeEEEEecCCCc-------------cccccceeeeeEEEEecCCCHH
Confidence            999999999998765431  1111   111234778888888543             4789999999988889888776


Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCC
Q psy17703        499 QFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSET  578 (720)
Q Consensus       499 ~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~  578 (720)
                      +....+.             .........+++++.+.+....             ..+.|.+..+++.+...|.....+.
T Consensus       168 ~~~~~l~-------------~~~~~~~~~~~~~~l~~i~~~s-------------~gd~R~ai~~l~~~~~~~~~~~~~~  221 (238)
T d1in4a2         168 ELKEIIK-------------RAASLMDVEIEDAAAEMIAKRS-------------RGTPRIAIRLTKRVRDMLTVVKADR  221 (238)
T ss_dssp             HHHHHHH-------------HHHHHTTCCBCHHHHHHHHHTS-------------TTCHHHHHHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHH-------------HhhhhccchhhHHHHHHHHHhC-------------CCCHHHHHHHHHHHHHHHHHhcCCc
Confidence            5433322             2233345678888877775321             1246888888888777788888889


Q ss_pred             CCHHhHHHHHHHH
Q psy17703        579 VEVQDVDEAWRLH  591 (720)
Q Consensus       579 V~~~Dv~~Ai~l~  591 (720)
                      |+.+++.+|+..+
T Consensus       222 it~~~~~~al~~l  234 (238)
T d1in4a2         222 INTDIVLKTMEVL  234 (238)
T ss_dssp             BCHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHhh
Confidence            9999999997654

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.40  E-value=5e-13  Score=134.94  Aligned_cols=213  Identities=18%  Similarity=0.202  Sum_probs=135.4

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCcc----ccCCccccc---cccceeecCccccceeeecceeeecCCceeecc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQY----TSGKGSSAV---GLTAYITKDPETRQMVLQTGALVLADSGVCCID  416 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~----~~g~~ss~~---glta~~~~~~~~~~~~~~~G~l~lad~gI~~ID  416 (720)
                      .+.||||.|+|||||+.+|++++...++...    .........   ....+..+...++.....+|.+..+++|++|||
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~l~~a~gGtL~l~  101 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLD  101 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEE
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhhhcccHHHhcCcccCCcCCcccccCCHHHccCCCEEEEe
Confidence            5789999999999999999999987754311    111100000   000011122222333445788889999999999


Q ss_pred             ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE-EEecCC
Q psy17703        417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI-FLLLDP  495 (720)
Q Consensus       417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli-~~l~d~  495 (720)
                      |++.++.+.|..|..+++++.+.-  .|.......++.+|+++|...      .....+-.+.+.|++|+... +.+++.
T Consensus       102 ~i~~L~~~~Q~~L~~~l~~~~~~~--~~~~~~~~~~~RlI~~s~~~l------~~l~~~~~f~~~L~~~l~~~~i~lPpL  173 (247)
T d1ny5a2         102 EIGELSLEAQAKLLRVIESGKFYR--LGGRKEIEVNVRILAATNRNI------KELVKEGKFREDLYYRLGVIEIEIPPL  173 (247)
T ss_dssp             SGGGCCHHHHHHHHHHHHHSEECC--BTCCSBEECCCEEEEEESSCH------HHHHHTTSSCHHHHHHHTTEEEECCCG
T ss_pred             ChHhCCHHHHHHHHHHHHhCCEEE--CCCCCceecCeEEEEecCCCH------HHHHHcCCCcHHHHhhcCeeeecCCCh
Confidence            999999999999999999887653  455555567788999988432      12233346889999998844 344433


Q ss_pred             ChHHHHHHHHhhcchhHHHHHHHHHHhh---cCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHH
Q psy17703        496 QSEQFDARLARHLDITVLRDYIAYAQEH---LSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAK  572 (720)
Q Consensus       496 ~~~~~d~~la~~i~~~~l~~~i~~ar~~---~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~  572 (720)
                      .+...|  +.     .+++.++......   -.+.++++|.+.|..+            +||.+.|+|+.+++-+-..  
T Consensus       174 reR~~D--i~-----~l~~~~l~~~~~~~~~~~~~ls~~al~~L~~~------------~WPGNl~EL~~~l~~a~~~--  232 (247)
T d1ny5a2         174 RERKED--II-----PLANHFLKKFSRKYAKEVEGFTKSAQELLLSY------------PWYGNVRELKNVIERAVLF--  232 (247)
T ss_dssp             GGCHHH--HH-----HHHHHHHHHHHHHTTCCCCEECHHHHHHHHHS------------CCTTHHHHHHHHHHHHHHH--
T ss_pred             hhchhh--Hh-----hhhhhhhhhhhhhcCCCCCCCCHHHHHHHHhC------------CCCCHHHHHHHHHHHHHHh--
Confidence            222111  11     1223333322221   1246899999988744            5777889999988855443  


Q ss_pred             HcCCCCCCHHhHHH
Q psy17703        573 MRYSETVEVQDVDE  586 (720)
Q Consensus       573 l~~~~~V~~~Dv~~  586 (720)
                       .-.+.|+.+|+..
T Consensus       233 -~~~~~I~~~dl~~  245 (247)
T d1ny5a2         233 -SEGKFIDRGELSC  245 (247)
T ss_dssp             -CCSSEECHHHHHH
T ss_pred             -CCCCeECHHHccc
Confidence             3345788888754

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=99.29  E-value=1.3e-12  Score=131.87  Aligned_cols=185  Identities=23%  Similarity=0.213  Sum_probs=109.2

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCC--ccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGK--GSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~--~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      .++||+||||||||++++++++.+....+. ++.  .+..+|.+...++     +....+.   .....|++|||+|.+.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~l~-----~~f~~a~---~~~p~Ii~iDeid~l~  114 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVR-----DLFETAK---RHAPCIVFIDEIDAVG  114 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHH-----HHHHHHT---TSSSEEEEEETHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhccccHHHHHHH-----HHHHHHH---HcCCEEEEEEChhhhC
Confidence            479999999999999999999987543221 110  0011111111000     0000011   1124699999998752


Q ss_pred             h-----------H---HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cc
Q psy17703        423 D-----------T---TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RF  486 (720)
Q Consensus       423 ~-----------~---~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RF  486 (720)
                      .           .   ..+.|+..|+.-           .-+.++.+|||+|-..             .++++|++  ||
T Consensus       115 ~~r~~~~~~~~~~~~~~~~~ll~~~d~~-----------~~~~~vivi~tTn~~~-------------~ld~al~R~~Rf  170 (247)
T d1ixza_         115 RKRGSGVGGGNDEREQTLNQLLVEMDGF-----------EKDTAIVVMAATNRPD-------------ILDPALLRPGRF  170 (247)
T ss_dssp             C---------CHHHHHHHHHHHHHHHTC-----------CTTCCEEEEEEESCGG-------------GSCGGGGSTTSS
T ss_pred             ccCCCCCCCCcHHHHHHHHHHHHHhhCC-----------CCCCCEEEEEeCCCcc-------------ccCHhHcCCCCC
Confidence            1           1   133455555421           1134678999999554             58899984  99


Q ss_pred             eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703        487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL  566 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl  566 (720)
                      |..+.+..|..+++...+.         .|+..     .+...+...+.+.    +.      ..  ..|.+.+..+++-
T Consensus       171 ~~~i~~~~P~~~eR~~il~---------~~l~~-----~~~~~~~~~~~la----~~------t~--g~s~~di~~lv~~  224 (247)
T d1ixza_         171 DRQIAIDAPDVKGREQILR---------IHARG-----KPLAEDVDLALLA----KR------TP--GFVGADLENLLNE  224 (247)
T ss_dssp             CEEEECCSCCHHHHHHHHH---------HHHTT-----SCBCTTCCHHHHH----HT------CT--TCCHHHHHHHHHH
T ss_pred             cEEEEECCcCHHHHHHHHH---------HHhcc-----cCCccccCHHHHH----HH------CC--CCCHHHHHHHHHH
Confidence            9999998887766544333         22211     1111111112221    10      11  2456999999998


Q ss_pred             HHHHHHHcCCCCCCHHhHHHHH
Q psy17703        567 SEAHAKMRYSETVEVQDVDEAW  588 (720)
Q Consensus       567 a~A~A~l~~~~~V~~~Dv~~Ai  588 (720)
                      |.-.|..+.++.++.+|+++|+
T Consensus       225 A~l~a~~~~~~~i~~~d~~~A~  246 (247)
T d1ixza_         225 AALLAAREGRRKITMKDLEEAA  246 (247)
T ss_dssp             HHHHHHHTTCSSBCHHHHHHHT
T ss_pred             HHHHHHHcCCCCcCHHHHHHhh
Confidence            8888888888999999999995

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=6.7e-12  Score=127.06  Aligned_cols=187  Identities=23%  Similarity=0.249  Sum_probs=111.3

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCCCccc-cCC--ccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPRSQYT-SGK--GSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~-~g~--~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      .-++||+||||||||++++++++.+....+. ++.  .+..+|.+...++     +....+.   .....|+||||+|.+
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~~~g~~~~~l~-----~~f~~A~---~~~P~il~iDeiD~l  116 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVR-----DMFEQAK---KAAPCIIFIDEIDAV  116 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHH-----HHHHHHH---TTCSEEEEETTHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhcchhHHHHHHH-----HHHHHHH---HcCCEEEEEEChhhh
Confidence            3579999999999999999999977543321 111  1111111111000     0000110   112459999999875


Q ss_pred             Ch-----------H---HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--c
Q psy17703        422 SD-----------T---TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--R  485 (720)
Q Consensus       422 ~~-----------~---~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--R  485 (720)
                      ..           .   ..+.|+..|+.-           .-+.++.+|||+|...             .++++|++  |
T Consensus       117 ~~~r~~~~~~~~~~~~~~~~~ll~~~d~~-----------~~~~~v~vIatTn~~~-------------~ld~al~R~gR  172 (256)
T d1lv7a_         117 GRQRGAGLGGGHDEREQTLNQMLVEMDGF-----------EGNEGIIVIAATNRPD-------------VLDPALLRPGR  172 (256)
T ss_dssp             TCCCSTTSCCTTCHHHHHHHHHHHHHHTC-----------CSSSCEEEEEEESCTT-------------TSCGGGGSTTS
T ss_pred             CccCCCCCCCCcHHHHHHHHHHHHHhhCC-----------CCCCCEEEEEeCCCcc-------------cCCHhHcCCCC
Confidence            21           1   123455555421           1134678999999654             58999986  9


Q ss_pred             ceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHH
Q psy17703        486 FDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIR  565 (720)
Q Consensus       486 Fdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lir  565 (720)
                      ||..+.+..|..+++...+.         .|+.  +..+.+..   ....+.+          ...  ..+.+.+..+++
T Consensus       173 fd~~i~i~~P~~~~R~~il~---------~~l~--~~~~~~~~---~~~~la~----------~t~--G~s~adi~~l~~  226 (256)
T d1lv7a_         173 FDRQVVVGLPDVRGREQILK---------VHMR--RVPLAPDI---DAAIIAR----------GTP--GFSGADLANLVN  226 (256)
T ss_dssp             SCEEEECCCCCHHHHHHHHH---------HHHT--TSCBCTTC---CHHHHHH----------TCT--TCCHHHHHHHHH
T ss_pred             CCEEEECCCcCHHHHHHHHH---------Hhcc--CCCcCccc---CHHHHHH----------hCC--CCCHHHHHHHHH
Confidence            99999998887766544433         2211  11111211   1122221          011  245699999999


Q ss_pred             HHHHHHHHcCCCCCCHHhHHHHHH
Q psy17703        566 LSEAHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       566 la~A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      -|...|..+.+..++.+|++.|++
T Consensus       227 ~A~~~a~~~~~~~i~~~d~~~Al~  250 (256)
T d1lv7a_         227 EAALFAARGNKRVVSMVEFEKAKD  250 (256)
T ss_dssp             HHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCccCHHHHHHHHH
Confidence            887777778888999999999976

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=9.8e-12  Score=129.80  Aligned_cols=188  Identities=16%  Similarity=0.148  Sum_probs=113.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccccceeecCcc--ccc--eeeecceeeecCCceeeccccccC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLTAYITKDPE--TRQ--MVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glta~~~~~~~--~~~--~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      ++||+||||+|||.|++.+|+.+..... .++.+.+..+........+.  .|.  ...-.+.+.....+++++||++|+
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~~~~~~~~l~g~~~gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa  133 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA  133 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred             EEEEECCCcchhHHHHHHHHhhccCCeeEeccccccchhhhhhhcccCCCccccccCChhhHHHHhCccchhhhcccccc
Confidence            7899999999999999999998754321 11111111111111111110  000  000011223345689999999999


Q ss_pred             ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCC---------CCc-ccccc--cCCChhhhccceeE
Q psy17703        422 SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWN---------TSK-TIIDN--IRLPHTLLSRFDLI  489 (720)
Q Consensus       422 ~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~---------~~~-~~~~~--~~l~~aLlsRFdli  489 (720)
                      +++.++.|+++++.+.++-. .|... -..++.++.|+|--.....         ..+ ...+.  -.++|.|++|||.+
T Consensus       134 ~~~V~~~lLqild~G~ltd~-~Gr~v-df~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~i  211 (315)
T d1r6bx3         134 HPDVFNILLQVMDNGTLTDN-NGRKA-DFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNI  211 (315)
T ss_dssp             CHHHHHHHHHHHHHSEEEET-TTEEE-ECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEE
T ss_pred             cchHhhhhHHhhccceecCC-CCCcc-CccceEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhh
Confidence            99999999999999999853 34433 3467889999995322110         000 00111  14899999999999


Q ss_pred             EEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTY  540 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y  540 (720)
                      +.+.+...++..+.+...+  ..+.+.  .....+.-.+++++.+.|++..
T Consensus       212 i~f~~l~~~~~~~I~~~~l--~~~~~~--l~~~~i~l~~~~~a~~~l~~~~  258 (315)
T d1r6bx3         212 IWFDHLSTDVIHQVVDKFI--VELQVQ--LDQKGVSLEVSQEARNWLAEKG  258 (315)
T ss_dssp             EECCCCCHHHHHHHHHHHH--HHHHHH--HHHTTEEEEECHHHHHHHHHHH
T ss_pred             hcccchhhhHHHHHHHHHH--HHHHHH--HHhcCcchhhHHHHHHHHHHhC
Confidence            9998887766554443221  112221  2234566778999999888753

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=3.6e-11  Score=120.35  Aligned_cols=184  Identities=20%  Similarity=0.166  Sum_probs=109.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccc---------------cccccceeecC-ccccceeeecceeeecC-
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSS---------------AVGLTAYITKD-PETRQMVLQTGALVLAD-  409 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss---------------~~glta~~~~~-~~~~~~~~~~G~l~lad-  409 (720)
                      ++||+||||+|||++++.+++.+............               ...+.++-... ...+. .++.......+ 
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~ir~-~~~~~~~~~~~~  114 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRD-LLDNVQYAPARG  114 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHHTCCTTEEEEETTCSSSHHHHHH-HHHSCCCSCSSS
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhcCccccccCccccchHHHHHHcCCCCeEEEecchhcCCHHHHHH-HHHHHHhccccC
Confidence            38999999999999999999866322211111100               00000000000 00000 00000111112 


Q ss_pred             -CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhcccee
Q psy17703        410 -SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDL  488 (720)
Q Consensus       410 -~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdl  488 (720)
                       .-+++|||+|.|+.+.+++|+..||+.             +.++.++.++|...             ++.+++.|||. 
T Consensus       115 ~~kviiIde~d~l~~~~q~~Llk~lE~~-------------~~~~~~il~tn~~~-------------~i~~~i~SRc~-  167 (239)
T d1njfa_         115 RFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEHVKFLLATTDPQ-------------KLPVTILSRCL-  167 (239)
T ss_dssp             SSEEEEEETGGGSCHHHHHHHHHHHHSC-------------CTTEEEEEEESCGG-------------GSCHHHHTTSE-
T ss_pred             CCEEEEEECcccCCHHHHHHHHHHHhcC-------------CCCeEEEEEcCCcc-------------ccChhHhhhhc-
Confidence             238999999999999999999999853             34566777777432             58899999995 


Q ss_pred             EEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHH
Q psy17703        489 IFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSE  568 (720)
Q Consensus       489 i~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~  568 (720)
                      .+.+..++.++..             +++..........+++++.+.++..-             ..++|.+..++..+.
T Consensus       168 ~i~~~~~~~~~i~-------------~~l~~i~~~e~~~~~~~~l~~i~~~s-------------~Gd~R~ain~l~~~~  221 (239)
T d1njfa_         168 QFHLKALDVEQIR-------------HQLEHILNEEHIAHEPRALQLLARAA-------------EGSLRDALSLTDQAI  221 (239)
T ss_dssp             EEECCCCCHHHHH-------------HHHHHHHHHHTCCBCHHHHHHHHHHT-------------TTCHHHHHHHHHHHH
T ss_pred             ccccccCcHHHhh-------------hHHHHHHhhhccCCCHHHHHHHHHHc-------------CCCHHHHHHHHHHHH
Confidence            6677777665443             22222222335678888888876421             124577776665433


Q ss_pred             HHHHHcCCCCCCHHhHHHHH
Q psy17703        569 AHAKMRYSETVEVQDVDEAW  588 (720)
Q Consensus       569 A~A~l~~~~~V~~~Dv~~Ai  588 (720)
                          ..+.+.|+.+|+.+++
T Consensus       222 ----~~~~~~I~~~~v~~~l  237 (239)
T d1njfa_         222 ----ASGDGQVSTQAVSAML  237 (239)
T ss_dssp             ----HHTTTSBCHHHHHHHH
T ss_pred             ----HhCCCCcCHHHHHHHh
Confidence                2345789999998875

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.25  E-value=1.4e-11  Score=128.33  Aligned_cols=180  Identities=17%  Similarity=0.228  Sum_probs=101.2

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCc-cccCCccc----cccccceeecCccccceeeecceee--ecCCceeecccc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQ-YTSGKGSS----AVGLTAYITKDPETRQMVLQTGALV--LADSGVCCIDEF  418 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~-~~~g~~ss----~~glta~~~~~~~~~~~~~~~G~l~--lad~gI~~IDEi  418 (720)
                      -++||+||||||||.||+++|+.+.... ..++.+.+    ..++.....+     .....++...  ....+|+||||+
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~-----~~f~~a~~~~~~~~~~~IIf~DEI  124 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIR-----DLTDSAGGAIDAVEQNGIVFIDEI  124 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHH-----HHHHTTTTCHHHHHHHCEEEEECG
T ss_pred             ceEEEECCCCCCHHHHHHHHhhccccchhcccccccccceeEeeecccccc-----ccchhhhcccccccCCceEEehhh
Confidence            4889999999999999999999764321 12221111    1222211111     1111122111  012589999999


Q ss_pred             ccCChH------------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccc
Q psy17703        419 DKMSDT------------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRF  486 (720)
Q Consensus       419 dkm~~~------------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRF  486 (720)
                      |++.+.            .++.|+..|+..+++. +. .... ..+..++++.+...         .....+.|+++.||
T Consensus       125 dki~~~~~~~~~~~~~~gv~~~LL~~~dg~~~~~-~~-~~i~-~s~ilfi~~ga~~~---------~~~~~~~p~l~~R~  192 (309)
T d1ofha_         125 DKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-KH-GMVK-TDHILFIASGAFQV---------ARPSDLIPELQGRL  192 (309)
T ss_dssp             GGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEE-TT-EEEE-CTTCEEEEEECCSS---------SCGGGSCHHHHHTC
T ss_pred             hhhhhhccCcccchhhhHHHHHhhHHhcCCEEec-CC-eEEE-ccceeEEeccchhh---------cCcccchhhhhhhh
Confidence            998753            4566888888766654 22 2211 23455666543221         11235889999999


Q ss_pred             eeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHH-hhcCCcchHHHHHHHHHHHHHh
Q psy17703        487 DLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQ-EHLSPTLSEEASQRLIQTYVDM  543 (720)
Q Consensus       487 dli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar-~~~~p~ls~ea~~~l~~~y~~l  543 (720)
                      |.++.+..+...+..+.+..+.. .+...+..... ....-.+++.+.......+...
T Consensus       193 ~~~i~~~~~~~~~~~~Il~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (309)
T d1ofha_         193 PIRVELTALSAADFERILTEPHA-SLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRV  249 (309)
T ss_dssp             CEEEECCCCCHHHHHHHHHSSTT-CHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHH
T ss_pred             heeeeccCCCHHHHHHHHHHHHH-HHHHHHHHHHhhcCCccccchHHHHHHHHHHHHH
Confidence            99999988887777766665432 22222222222 2223345666666665555444

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=6.5e-12  Score=124.43  Aligned_cols=185  Identities=21%  Similarity=0.253  Sum_probs=109.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCccc----cCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQYT----SGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~----~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      |+||+||||+|||++++++++.+....+.    ....++..+..  ......  ........+.....-+++|||++.++
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~kiiiiDe~d~~~  112 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGID--VVRNQI--KDFASTRQIFSKGFKLIILDEADAMT  112 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHH--HHHTHH--HHHHHBCCSSSCSCEEEEETTGGGSC
T ss_pred             eEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccccCCee--eeecch--hhccccccccCCCeEEEEEeccccch
Confidence            79999999999999999999865221110    00000000000  000000  00000001111123489999999999


Q ss_pred             hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHH
Q psy17703        423 DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDA  502 (720)
Q Consensus       423 ~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~  502 (720)
                      ...+.+|+.+||+..             ..+.++.++|...             .+++++.+||. .+.+..++.++.. 
T Consensus       113 ~~~~~~Ll~~le~~~-------------~~~~~~~~~~~~~-------------~i~~~i~sr~~-~i~~~~~~~~~i~-  164 (227)
T d1sxjc2         113 NAAQNALRRVIERYT-------------KNTRFCVLANYAH-------------KLTPALLSQCT-RFRFQPLPQEAIE-  164 (227)
T ss_dssp             HHHHHHHHHHHHHTT-------------TTEEEEEEESCGG-------------GSCHHHHTTSE-EEECCCCCHHHHH-
T ss_pred             hhHHHHHHHHhhhcc-------------cceeeccccCcHH-------------HhHHHHHHHHh-hhccccccccccc-
Confidence            999999999998642             2455666666432             58899999995 6778777766543 


Q ss_pred             HHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCHH
Q psy17703        503 RLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEVQ  582 (720)
Q Consensus       503 ~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~~  582 (720)
                                  +++...-..-.-.+++++.+.|++...             ...|.+..++..+...+.......|+.+
T Consensus       165 ------------~~l~~I~~~e~i~i~~~~l~~i~~~s~-------------Gd~R~ain~Lq~~~~~~~~~~~~~It~~  219 (227)
T d1sxjc2         165 ------------RRIANVLVHEKLKLSPNAEKALIELSN-------------GDMRRVLNVLQSCKATLDNPDEDEISDD  219 (227)
T ss_dssp             ------------HHHHHHHHTTTCCBCHHHHHHHHHHHT-------------TCHHHHHHHTTTTTTTTCSSSCCCBCHH
T ss_pred             ------------cccccccccccccCCHHHHHHHHHHcC-------------CcHHHHHHHHHHHHHhcCCCCCCeeCHH
Confidence                        333332222344688888888775431             1246666655544444444556788888


Q ss_pred             hHHHHH
Q psy17703        583 DVDEAW  588 (720)
Q Consensus       583 Dv~~Ai  588 (720)
                      ++.+|+
T Consensus       220 ~v~e~~  225 (227)
T d1sxjc2         220 VIYECC  225 (227)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            888874

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=99.21  E-value=2.1e-11  Score=129.49  Aligned_cols=197  Identities=17%  Similarity=0.197  Sum_probs=110.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCC-ccccCCccccccccceeecCccccceeeecceeeecCCceeecccccc----
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRS-QYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDK----  420 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~-~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidk----  420 (720)
                      -|+||+||+|+|||.|++.+|+.+... +.......+..|..+.-.....+.-....++.+..+..|++++||++|    
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~~~~~~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~  148 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRL  148 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---
T ss_pred             cceeeeCCCCccHHHHHHHHHhhcccceeehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhccc
Confidence            479999999999999999999987432 223333333333322211110111111223445566789999999999    


Q ss_pred             ----------CChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCC---------------------CCCCCCC
Q psy17703        421 ----------MSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPC---------------------DSQWNTS  469 (720)
Q Consensus       421 ----------m~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~---------------------~g~~~~~  469 (720)
                                ..++.++.|++.||.+.+.+...+....-..++.++.++|-.                     ...+...
T Consensus       149 s~~~~~~~d~a~~~V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~  228 (364)
T d1um8a_         149 SENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQE  228 (364)
T ss_dssp             -----------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCS
T ss_pred             cccccccccccchHHHHhhhhhhcCceeccCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhccccccccccc
Confidence                      667789999999998776654333222222233333333320                     0001110


Q ss_pred             cc-------cc--------cccCCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHH-HhhcCCcchHHHH
Q psy17703        470 KT-------II--------DNIRLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYA-QEHLSPTLSEEAS  533 (720)
Q Consensus       470 ~~-------~~--------~~~~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~a-r~~~~p~ls~ea~  533 (720)
                      ..       ..        -...+.|.|+.|||.++.+.+...++..+.+.... ..++++|-... ...+.-.+++++.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~f~PEf~gRi~~iv~f~~L~~~~l~~Il~~~~-~~l~kq~~~~l~~~gi~L~~td~a~  307 (364)
T d1um8a_         229 KMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPK-NALIKQYQQLFKMDEVDLIFEEEAI  307 (364)
T ss_dssp             SCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSST-TCHHHHHHHHHHTTTCEEEECHHHH
T ss_pred             ccchhhhhhhhccccHHHHhhhhhHHHHHHHhcchhhHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHhCCcEEEECHHHH
Confidence            00       00        11258999999999999999988887776665332 13455554433 3457778999999


Q ss_pred             HHHHHHHHHh
Q psy17703        534 QRLIQTYVDM  543 (720)
Q Consensus       534 ~~l~~~y~~l  543 (720)
                      +.|++.-.+.
T Consensus       308 ~~la~~g~d~  317 (364)
T d1um8a_         308 KEIAQLALER  317 (364)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHhccCC
Confidence            9998865543

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.20  E-value=1.9e-11  Score=127.42  Aligned_cols=184  Identities=20%  Similarity=0.198  Sum_probs=110.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC----CCccccCCccc-------cccccceeecCccccceeeecceeeecCCceeec
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP----RSQYTSGKGSS-------AVGLTAYITKDPETRQMVLQTGALVLADSGVCCI  415 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p----r~~~~~g~~ss-------~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~I  415 (720)
                      .+||+||||+|||.+|+.+++.+.    +.+...+...+       ..|...+.+.....+..   ..++.....+|+++
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~~~~L~g~~~gyvG~~~~~~l---~~~~~~~p~~Vvl~  131 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQL---TEAVRRRPYSVILF  131 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CH---HHHHHHCSSEEEEE
T ss_pred             EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchhhhhhcCCCCCCcCcccCChH---HHHHHhCCCcEEEE
Confidence            688999999999999999999762    11111211111       11111111111000100   11222334689999


Q ss_pred             cccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCC-------CCCCCcc----ccc--ccCCChhh
Q psy17703        416 DEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDS-------QWNTSKT----IID--NIRLPHTL  482 (720)
Q Consensus       416 DEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g-------~~~~~~~----~~~--~~~l~~aL  482 (720)
                      |||+|++++.++.|+++|+.++++- ..|.... ..++.+++|+|--..       .+.....    ...  .-.++|+|
T Consensus       132 DEieK~~~~v~~~ll~~l~~g~~~~-~~gr~v~-~~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEf  209 (315)
T d1qvra3         132 DEIEKAHPDVFNILLQILDDGRLTD-SHGRTVD-FRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEF  209 (315)
T ss_dssp             SSGGGSCHHHHHHHHHHHTTTEECC-SSSCCEE-CTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHH
T ss_pred             ehHhhcCHHHHHHHHHHhccCceeC-CCCcEec-CcceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHH
Confidence            9999999999999999999998874 3343333 467999999993110       0000000    000  12599999


Q ss_pred             hccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHH
Q psy17703        483 LSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQT  539 (720)
Q Consensus       483 lsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~  539 (720)
                      ++|||.++.+.+...++..+.+...+  ..+++.  ++.+.+.-.+++++.+.|++.
T Consensus       210 lnRid~Ii~F~~L~~~~~~~I~~~~l--~~l~~r--l~~~~i~l~i~~~~~~~L~~~  262 (315)
T d1qvra3         210 LNRLDEIVVFRPLTKEQIRQIVEIQL--SYLRAR--LAEKRISLELTEAAKDFLAER  262 (315)
T ss_dssp             HHTCSBCCBCCCCCHHHHHHHHHHHH--HHHHHH--HHTTTCEEEECHHHHHHHHHH
T ss_pred             HhcCCeeeeccchhhhhhHHHHHHHH--HHHHHH--HHhccccccccHHHHHHHHHh
Confidence            99999998888888777665554322  222322  233456778899999998865

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.13  E-value=7.6e-11  Score=116.91  Aligned_cols=180  Identities=17%  Similarity=0.253  Sum_probs=105.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCcc----ccCCccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQY----TSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~----~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      -|+||+||||+|||++++.+++.+....+    .....++..+..  ..+... .... ...........++++||++.+
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s~~~~~~--~~~~~~-~~~~-~~~~~~~~~~~iilide~d~~  121 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGIN--VIREKV-KEFA-RTKPIGGASFKIIFLDEADAL  121 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHH--TTHHHH-HHHH-HSCCGGGCSCEEEEEETGGGS
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEecCcccchh--HHHHHH-HHHH-hhhhccCCCceEEeehhhhhc
Confidence            48999999999999999999986532100    000001100000  000000 0000 000111234679999999999


Q ss_pred             ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHH
Q psy17703        422 SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFD  501 (720)
Q Consensus       422 ~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d  501 (720)
                      ....+.+|+..|+...             ..+.+++++|...             .++++|.+||. .+.+.++...+..
T Consensus       122 ~~~~~~~ll~~l~~~~-------------~~~~~i~~~n~~~-------------~i~~~l~sR~~-~i~~~~~~~~~~~  174 (231)
T d1iqpa2         122 TQDAQQALRRTMEMFS-------------SNVRFILSCNYSS-------------KIIEPIQSRCA-IFRFRPLRDEDIA  174 (231)
T ss_dssp             CHHHHHHHHHHHHHTT-------------TTEEEEEEESCGG-------------GSCHHHHHTEE-EEECCCCCHHHHH
T ss_pred             chhHHHHHhhhcccCC-------------cceEEEeccCChh-------------hchHhHhCccc-cccccccchhhHH
Confidence            9999999999998653             2356777777442             57899999996 5667766665443


Q ss_pred             HHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCH
Q psy17703        502 ARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEV  581 (720)
Q Consensus       502 ~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~  581 (720)
                      ..+.             ..-....-.+++++.+.|++.+.             ...|++..+++.+     ..+.+.++.
T Consensus       175 ~~l~-------------~~~~~e~i~i~~~~l~~I~~~~~-------------gdiR~ai~~Lq~~-----~~~~~~it~  223 (231)
T d1iqpa2         175 KRLR-------------YIAENEGLELTEEGLQAILYIAE-------------GDMRRAINILQAA-----AALDKKITD  223 (231)
T ss_dssp             HHHH-------------HHHHTTTCEECHHHHHHHHHHHT-------------TCHHHHHHHHHHH-----HTTCSEECH
T ss_pred             HHHH-------------HHHHHhCCCCCHHHHHHHHHHcC-------------CCHHHHHHHHHHH-----HHcCCCcCH
Confidence            3322             11112244578888888775431             1347666555443     234567888


Q ss_pred             HhHHHH
Q psy17703        582 QDVDEA  587 (720)
Q Consensus       582 ~Dv~~A  587 (720)
                      +++.++
T Consensus       224 e~v~~v  229 (231)
T d1iqpa2         224 ENVFMV  229 (231)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            877654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=2.5e-10  Score=113.12  Aligned_cols=189  Identities=16%  Similarity=0.165  Sum_probs=109.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC------CC-ccccCCccccccccceeecCccccceeeecc-----eeeecCCcee
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP------RS-QYTSGKGSSAVGLTAYITKDPETRQMVLQTG-----ALVLADSGVC  413 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p------r~-~~~~g~~ss~~glta~~~~~~~~~~~~~~~G-----~l~lad~gI~  413 (720)
                      -|+||+||||+|||++++++++.+.      .. ..................++...... ...+     ........++
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vi  112 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTV-SKPSKHDLENYPCPPYKII  112 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCC-CCCCTTHHHHSCCCSCEEE
T ss_pred             CeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccccchHHHHHHHHHhhhhh-hhhhHHHHhhccccCceEE
Confidence            3799999999999999999998641      11 11111100000000000000000000 0000     0011123489


Q ss_pred             eccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEec
Q psy17703        414 CIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLL  493 (720)
Q Consensus       414 ~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~  493 (720)
                      +|||++.++...+..++..++...             ..+.++.++|...             .+++++.||| ..+.+.
T Consensus       113 iiDe~d~l~~~~~~~l~~~~~~~~-------------~~~~~i~~~~~~~-------------~~~~~l~sr~-~~i~f~  165 (237)
T d1sxjd2         113 ILDEADSMTADAQSALRRTMETYS-------------GVTRFCLICNYVT-------------RIIDPLASQC-SKFRFK  165 (237)
T ss_dssp             EETTGGGSCHHHHHHHHHHHHHTT-------------TTEEEEEEESCGG-------------GSCHHHHHHS-EEEECC
T ss_pred             EEecccccCHHHHHHHhhcccccc-------------ccccccccccccc-------------cccccccchh-hhhccc
Confidence            999999999999999999987643             2234455554322             4779999999 477788


Q ss_pred             CCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHH
Q psy17703        494 DPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKM  573 (720)
Q Consensus       494 d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l  573 (720)
                      ++..++....|             ......-.-.+++++.+.|+...         .    ...|.+..++..+...+..
T Consensus       166 ~~~~~~~~~~L-------------~~i~~~e~i~i~~~~l~~ia~~s---------~----gd~R~ai~~L~~~~~~~~~  219 (237)
T d1sxjd2         166 ALDASNAIDRL-------------RFISEQENVKCDDGVLERILDIS---------A----GDLRRGITLLQSASKGAQY  219 (237)
T ss_dssp             CCCHHHHHHHH-------------HHHHHTTTCCCCHHHHHHHHHHT---------S----SCHHHHHHHHHHTHHHHHH
T ss_pred             cccccccchhh-------------hhhhhhhcCcCCHHHHHHHHHHc---------C----CCHHHHHHHHHHHHHhchh
Confidence            77766543332             22222234468999988887542         1    2347766666655555554


Q ss_pred             c-CCCCCCHHhHHHHH
Q psy17703        574 R-YSETVEVQDVDEAW  588 (720)
Q Consensus       574 ~-~~~~V~~~Dv~~Ai  588 (720)
                      . ..+.++.+++++++
T Consensus       220 ~~~~~~It~~~i~e~~  235 (237)
T d1sxjd2         220 LGDGKNITSTQVEELA  235 (237)
T ss_dssp             HCSCCCCCHHHHHHHH
T ss_pred             cCCCCccCHHHHHHhh
Confidence            3 34679999999875

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=1.1e-10  Score=118.36  Aligned_cols=129  Identities=22%  Similarity=0.198  Sum_probs=78.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCC---ccccccccceeecCccccceeeecceeeecCCceeeccccccCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGK---GSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS  422 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~---~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~  422 (720)
                      -.+||+||||||||++++++++.+....+....   .+...|.+....+     .....+-   .....|++|||+|.+.
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g~~~~~l~-----~~f~~A~---~~~p~il~iDeid~l~  110 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLR-----KAFEEAE---KNAPAIIFIDELDAIA  110 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTTHHHHHHH-----HHHHHHH---HTCSEEEEESSGGGTC
T ss_pred             ceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccccHHHHHH-----HHHHHHH---hcCCeEEEehhhhhhc
Confidence            369999999999999999999987654332110   0111111111000     0000000   1124699999999986


Q ss_pred             hHH-----------HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeE
Q psy17703        423 DTT-----------RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLI  489 (720)
Q Consensus       423 ~~~-----------~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli  489 (720)
                      ...           ...++..++.           ...+.++.+|||+|...             .+++++++  |||..
T Consensus       111 ~~r~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~vlvi~tTn~~~-------------~ld~al~r~gRfd~~  166 (258)
T d1e32a2         111 PKREKTHGEVERRIVSQLLTLMDG-----------LKQRAHVIVMAATNRPN-------------SIDPALRRFGRFDRE  166 (258)
T ss_dssp             CHHHHCCCTTHHHHHHHHHHHHHT-----------CCCSSCEEEEEEESCGG-------------GSCGGGTSTTSSCEE
T ss_pred             cCCCCCCCchHHHHHHHhcccccc-----------ccccCCccEEEeCCCcc-------------ccchhhhhcccccce
Confidence            432           2223333321           12345688999999654             58999998  99999


Q ss_pred             EEecCCChHHHHHHHHh
Q psy17703        490 FLLLDPQSEQFDARLAR  506 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la~  506 (720)
                      +.+..|..+++...+..
T Consensus       167 i~~~~P~~~~R~~il~~  183 (258)
T d1e32a2         167 VDIGIPDATGRLEILQI  183 (258)
T ss_dssp             EECCCCCHHHHHHHHHH
T ss_pred             eECCCCCHHHHHHHhhh
Confidence            99999987776655543

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=2.8e-10  Score=112.25  Aligned_cols=182  Identities=16%  Similarity=0.184  Sum_probs=103.1

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccc----cCCccccccccceeecCccccceeeecceeeecCCceeeccccccC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYT----SGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKM  421 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~----~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm  421 (720)
                      -|+||+||||+|||++|+.+++.+....+.    ....++.-+..  ...+.. ..+....-........++++||+|.|
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~~~~--~i~~~~-~~~~~~~~~~~~~~~kviiiDe~d~~  113 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGID--VVRNQI-KHFAQKKLHLPPGKHKIVILDEADSM  113 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHH--HHHTHH-HHHHHBCCCCCTTCCEEEEEESGGGS
T ss_pred             CeEEEECCCCCCchhhHHHHHHHHhccccccccccccccccCCce--ehhhHH-HHHHHhhccCCCcceEEEEEeccccc
Confidence            389999999999999999999865321100    00001000000  000000 00000000011112458999999999


Q ss_pred             ChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHH
Q psy17703        422 SDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFD  501 (720)
Q Consensus       422 ~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d  501 (720)
                      +...+.+|+..||...             ..+.++.++|...             .++++|+|||. .+.+..++.++..
T Consensus       114 ~~~~~~~ll~~~e~~~-------------~~~~~i~~~~~~~-------------~i~~~l~sr~~-~i~~~~~~~~~i~  166 (224)
T d1sxjb2         114 TAGAQQALRRTMELYS-------------NSTRFAFACNQSN-------------KIIEPLQSQCA-ILRYSKLSDEDVL  166 (224)
T ss_dssp             CHHHHHTTHHHHHHTT-------------TTEEEEEEESCGG-------------GSCHHHHTTSE-EEECCCCCHHHHH
T ss_pred             chhHHHHHhhhccccc-------------cceeeeeccCchh-------------hhhhHHHHHHH-HhhhcccchhhhH
Confidence            9999999999998643             3345566666432             58899999995 6788888766543


Q ss_pred             HHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHHHHHHHHcCCCCCCH
Q psy17703        502 ARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLSEAHAKMRYSETVEV  581 (720)
Q Consensus       502 ~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla~A~A~l~~~~~V~~  581 (720)
                      ..             +...-..-.-.+++++.+.++...             ..++|.+..++..+-+     ..+.++.
T Consensus       167 ~~-------------l~~i~~~e~~~i~~~~l~~I~~~s-------------~Gd~R~ai~~Lq~~~~-----~~~~i~~  215 (224)
T d1sxjb2         167 KR-------------LLQIIKLEDVKYTNDGLEAIIFTA-------------EGDMRQAINNLQSTVA-----GHGLVNA  215 (224)
T ss_dssp             HH-------------HHHHHHHHTCCBCHHHHHHHHHHH-------------TTCHHHHHHHHHHHHH-----HHSSBCH
T ss_pred             HH-------------HHHHHHhcccCCCHHHHHHHHHHc-------------CCcHHHHHHHHHHHHH-----cCCCcCH
Confidence            33             332222235567888877776442             1234655555443221     2346777


Q ss_pred             HhHHHHH
Q psy17703        582 QDVDEAW  588 (720)
Q Consensus       582 ~Dv~~Ai  588 (720)
                      +++.+++
T Consensus       216 ~~i~~~~  222 (224)
T d1sxjb2         216 DNVFKIV  222 (224)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7766553

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.93  E-value=4.7e-09  Score=104.68  Aligned_cols=64  Identities=11%  Similarity=0.224  Sum_probs=50.3

Q ss_pred             ceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEE
Q psy17703        411 GVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIF  490 (720)
Q Consensus       411 gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~  490 (720)
                      .+++|||+|.|+...+..|+..||+.             +.++.+++++|...             .++++++|||. ++
T Consensus       133 ~iiiide~d~l~~~~~~~l~~~~e~~-------------~~~~~~Il~tn~~~-------------~i~~~l~sR~~-~i  185 (252)
T d1sxje2         133 KCVIINEANSLTKDAQAALRRTMEKY-------------SKNIRLIMVCDSMS-------------PIIAPIKSQCL-LI  185 (252)
T ss_dssp             EEEEEECTTSSCHHHHHHHHHHHHHS-------------TTTEEEEEEESCSC-------------SSCHHHHTTSE-EE
T ss_pred             eEEEeccccccccccchhhhcccccc-------------cccccceeeecccc-------------chhhhhhcchh-ee
Confidence            48899999999999999999999853             34466778887543             58899999994 77


Q ss_pred             EecCCChHHHH
Q psy17703        491 LLLDPQSEQFD  501 (720)
Q Consensus       491 ~l~d~~~~~~d  501 (720)
                      .+.++..++..
T Consensus       186 ~~~~~~~~~~~  196 (252)
T d1sxje2         186 RCPAPSDSEIS  196 (252)
T ss_dssp             ECCCCCHHHHH
T ss_pred             eecccchhhHH
Confidence            78777766543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.92  E-value=3.2e-09  Score=106.46  Aligned_cols=210  Identities=13%  Similarity=0.035  Sum_probs=119.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCc-----cccCCcccccccc-ceeec-----Cccccceee-eccee-----eec
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQ-----YTSGKGSSAVGLT-AYITK-----DPETRQMVL-QTGAL-----VLA  408 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~-----~~~g~~ss~~glt-a~~~~-----~~~~~~~~~-~~G~l-----~la  408 (720)
                      -|+||+||||||||++++++++.+....     +............ .....     ....+.... ....+     ...
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERD  123 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTT
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhhhhhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcc
Confidence            4899999999999999999999774321     1111100000000 00000     000000000 00000     011


Q ss_pred             CCceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce-
Q psy17703        409 DSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD-  487 (720)
Q Consensus       409 d~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd-  487 (720)
                      ...+.++|++|.+.......+...++....         .-..++.+++++|+..-          .-.+.+++.+||- 
T Consensus       124 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~~~~----------~~~~~~~~~~r~~~  184 (276)
T d1fnna2         124 LYMFLVLDDAFNLAPDILSTFIRLGQEADK---------LGAFRIALVIVGHNDAV----------LNNLDPSTRGIMGK  184 (276)
T ss_dssp             CCEEEEEETGGGSCHHHHHHHHHHTTCHHH---------HSSCCEEEEEEESSTHH----------HHTSCHHHHHHHTT
T ss_pred             cccccchhHHHHhhhhhhhhHHHHHhcccc---------ccccceEEeecCCchhh----------hhhcchhhhhhhcc
Confidence            234667899999988776666555432110         11234667787775321          1146788888875 


Q ss_pred             eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHH
Q psy17703        488 LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS  567 (720)
Q Consensus       488 li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla  567 (720)
                      ..+.+.+++.++....+         +.++..+.  ....+++++.+.+.+....-    ........++|....+++.|
T Consensus       185 ~~i~~~~~~~~e~~~il---------~~r~~~~~--~~~~~~~~~l~~ia~~~~~~----~~~~~~~G~~R~a~~ll~~a  249 (276)
T d1fnna2         185 YVIRFSPYTKDQIFDIL---------LDRAKAGL--AEGSYSEDILQMIADITGAQ----TPLDTNRGDARLAIDILYRS  249 (276)
T ss_dssp             CEEECCCCBHHHHHHHH---------HHHHHHHB--CTTSSCHHHHHHHHHHHSBS----STTCTTSCCHHHHHHHHHHH
T ss_pred             hhccccchhHHHHHHHH---------HHHHHHhc--ccccccHHHHHHHHHHhhhh----hhhhhcCCCHHHHHHHHHHH
Confidence            34556655555443332         22333222  34568889988887653211    11122345689999999999


Q ss_pred             HHHHHHcCCCCCCHHhHHHHHH
Q psy17703        568 EAHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       568 ~A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      ...|..+++..|+.+|+++|.+
T Consensus       250 ~~~A~~~~~~~I~~edv~~A~~  271 (276)
T d1fnna2         250 AYAAQQNGRKHIAPEDVRKSSK  271 (276)
T ss_dssp             HHHHHHTTCSSCCHHHHHHHHH
T ss_pred             HHHHHHcCCCCcCHHHHHHHHH
Confidence            9999999999999999999976

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=8.3e-09  Score=100.54  Aligned_cols=68  Identities=24%  Similarity=0.265  Sum_probs=52.2

Q ss_pred             CceeeccccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeE
Q psy17703        410 SGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLI  489 (720)
Q Consensus       410 ~gI~~IDEidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli  489 (720)
                      ..|++|||+|.|+.+.+++|+..||+-             +.++.+|.++|...             ++.++++||+ ..
T Consensus       109 ~kviIide~d~l~~~a~n~Llk~lEep-------------~~~~~fIl~t~~~~-------------~ll~tI~SRc-~~  161 (207)
T d1a5ta2         109 AKVVWVTDAALLTDAAANALLKTLEEP-------------PAETWFFLATREPE-------------RLLATLRSRC-RL  161 (207)
T ss_dssp             CEEEEESCGGGBCHHHHHHHHHHHTSC-------------CTTEEEEEEESCGG-------------GSCHHHHTTS-EE
T ss_pred             cceEEechhhhhhhhhhHHHHHHHHhh-------------cccceeeeeecChh-------------hhhhhhccee-EE
Confidence            458999999999999999999999963             34566676666332             5889999999 57


Q ss_pred             EEecCCChHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARL  504 (720)
Q Consensus       490 ~~l~d~~~~~~d~~l  504 (720)
                      +.+..++.++....+
T Consensus       162 i~~~~~~~~~~~~~L  176 (207)
T d1a5ta2         162 HYLAPPPEQYAVTWL  176 (207)
T ss_dssp             EECCCCCHHHHHHHH
T ss_pred             EecCCCCHHHHHHHH
Confidence            788777766544333

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=1.2e-09  Score=110.96  Aligned_cols=131  Identities=18%  Similarity=0.237  Sum_probs=75.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCChHH
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSDTT  425 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~~~  425 (720)
                      -+|||+||||||||++++++++.+....+.... +...+...+.... ........+.   .....|++|||+|.+-...
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~-~~l~~~~~~~~~~-~l~~~f~~A~---~~~p~il~ideid~l~~~~  116 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANECQANFISIKG-PELLTMWFGESEA-NVREIFDKAR---QAAPCVLFFDELDSIAKAR  116 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECH-HHHHTSCTTTHHH-HHHHHHHHHH---HTCSEEEEESSGGGTCCHH
T ss_pred             CeEEEECCCCCcchhHHHHHHHHhCCcEEEEEH-HHhhhccccchHH-HHHHHHHHHH---hcCCcceeHHhhhhccccC
Confidence            479999999999999999999988654332111 1111100000000 0000000111   1235799999999875421


Q ss_pred             --------------HHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc--cceeE
Q psy17703        426 --------------RSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS--RFDLI  489 (720)
Q Consensus       426 --------------~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls--RFdli  489 (720)
                                    .+.|+..|+         +.  .-+.++.+|||+|-..             .|+++|++  |||..
T Consensus       117 ~~~~~~~~~~~~~~~~~ll~~l~---------~~--~~~~~v~vi~ttn~~~-------------~ld~al~r~gRf~~~  172 (265)
T d1r7ra3         117 GGNIGDGGGAADRVINQILTEMD---------GM--STKKNVFIIGATNRPD-------------IIDPAILRPGRLDQL  172 (265)
T ss_dssp             HHCCCTTHHHHHHHHHHHHHTCC-----------------CCEEEECCBSCT-------------TTSCGGGSSTTSEEE
T ss_pred             CCcCCCCcHHHHHHHHHHHHHhh---------Cc--CCCCCEEEEEeCCCch-------------hCCHHHhCCCCccEE
Confidence                          122332221         11  1123578999999655             58999986  99999


Q ss_pred             EEecCCChHHHHHHHH
Q psy17703        490 FLLLDPQSEQFDARLA  505 (720)
Q Consensus       490 ~~l~d~~~~~~d~~la  505 (720)
                      +.+..|..+++...+.
T Consensus       173 i~~~~p~~~~R~~il~  188 (265)
T d1r7ra3         173 IYIPLPDEKSRVAILK  188 (265)
T ss_dssp             EECCCCCCHHHHHHHH
T ss_pred             EEecchHHHHHHHHHH
Confidence            9999888877655544

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.71  E-value=7.1e-10  Score=111.28  Aligned_cols=126  Identities=11%  Similarity=0.194  Sum_probs=69.1

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCC---
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMS---  422 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~---  422 (720)
                      ..|||+||||||||++++++|+.+....+.-.......|....... .......-.+   ......|+||||+|++.   
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~~~~-~~i~~if~~A---~~~~p~il~iDEid~l~~~~  116 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKC-QAMKKIFDDA---YKSQLSCVVVDDIERLLDYV  116 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHH-HHHHHHHHHH---HTSSEEEEEECCHHHHTTCB
T ss_pred             eEEEEECcCCCCHHHHHHHHhhcccccccccccccccccccccchh-hhhhhhhhhh---hhcccceeehhhhhhHhhhc
Confidence            4799999999999999999999775443321111111111110000 0000000000   01124699999998752   


Q ss_pred             -------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCCh-hhhccceeEEEecC
Q psy17703        423 -------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPH-TLLSRFDLIFLLLD  494 (720)
Q Consensus       423 -------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~-aLlsRFdli~~l~d  494 (720)
                             ......|+..|+...          ....++.|+||+|..+             .+++ .+.+||+..+.+++
T Consensus       117 ~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vi~tTn~~~-------------~ld~~~~~~rF~~~i~~P~  173 (246)
T d1d2na_         117 PIGPRFSNLVLQALLVLLKKAP----------PQGRKLLIIGTTSRKD-------------VLQEMEMLNAFSTTIHVPN  173 (246)
T ss_dssp             TTTTBCCHHHHHHHHHHTTCCC----------STTCEEEEEEEESCHH-------------HHHHTTCTTTSSEEEECCC
T ss_pred             ccccchhHHHHHHHHHHhcCCC----------ccccceeeeeccCChh-------------hccchhhcCccceEEecCC
Confidence                   223345555554221          1123578899999432             2443 46789998888876


Q ss_pred             CChH
Q psy17703        495 PQSE  498 (720)
Q Consensus       495 ~~~~  498 (720)
                      ++..
T Consensus       174 ~~~r  177 (246)
T d1d2na_         174 IATG  177 (246)
T ss_dssp             EEEH
T ss_pred             chhH
Confidence            6544

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=3e-08  Score=99.97  Aligned_cols=203  Identities=14%  Similarity=0.160  Sum_probs=110.2

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCc-----cccccccceeecCccccceeeec----ceeeecCCcee
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKG-----SSAVGLTAYITKDPETRQMVLQT----GALVLADSGVC  413 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~-----ss~~glta~~~~~~~~~~~~~~~----G~l~lad~gI~  413 (720)
                      ..-|+||+||||+|||.+++.++..+..... .....     .+...+.++   ....|+|.-+-    ..+..+++-|+
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag---~~~~g~~e~r~~~i~~~~~~~~~iIl  114 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAG---TKYRGDFEKRFKALLKQLEQDTNSIL  114 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CC---CCCSSCHHHHHHHHHHHHSSSSCEEE
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhcc---CccchhHHHHHHHHHHHhhccCCceE
Confidence            5679999999999999999999875421100 00000     111111111   11223332111    01112345689


Q ss_pred             eccccccCCh---------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhc
Q psy17703        414 CIDEFDKMSD---------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLS  484 (720)
Q Consensus       414 ~IDEidkm~~---------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLls  484 (720)
                      ||||++.+-.         +.-+.|..++.               ...+.+|||+.|..-+        ..+.-.++|.+
T Consensus       115 fiDeih~l~~~g~~~g~~~d~a~~Lkp~L~---------------rg~i~vIgatT~eey~--------~~~e~d~al~r  171 (268)
T d1r6bx2         115 FIDEIHTIIGAGAASGGQVDAANLIKPLLS---------------SGKIRVIGSTTYQEFS--------NIFEKDRALAR  171 (268)
T ss_dssp             EETTTTTTTTSCCSSSCHHHHHHHHSSCSS---------------SCCCEEEEEECHHHHH--------CCCCCTTSSGG
T ss_pred             EecchHHHhcCCCCCCccccHHHHhhHHHh---------------CCCCeEEEeCCHHHHH--------HHHhhcHHHHh
Confidence            9999988721         11222322332               2357789999876421        22345789999


Q ss_pred             cceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHH
Q psy17703        485 RFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLI  564 (720)
Q Consensus       485 RFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~li  564 (720)
                      ||. .+.+..|+.++..+.+.         .+..+-..+-.-.+++++.+.+++.-..  -  ....   .-|.....++
T Consensus       172 rF~-~I~V~Eps~e~t~~IL~---------~~~~~~e~~h~v~~~~~al~~~v~ls~r--y--i~~~---~~PdKAIdll  234 (268)
T d1r6bx2         172 RFQ-KIDITEPSIEETVQIIN---------GLKPKYEAHHDVRYTAKAVRAAVELAVK--Y--INDR---HLPDKAIDVI  234 (268)
T ss_dssp             GEE-EEECCCCCHHHHHHHHH---------HHHHHHHHHHTCCCCHHHHHHHHHHHHH--H--CTTS---CTTHHHHHHH
T ss_pred             hhc-ccccCCCCHHHHHHHHH---------HhhHHHhccCCEEeChHHHHHHHHHHHh--h--ccCC---CCCcHHHHHH
Confidence            997 55666666655444433         2222222233566788888776543221  1  1111   1245666688


Q ss_pred             HHHHHHHHHc----CCCCCCHHhHHHHHH
Q psy17703        565 RLSEAHAKMR----YSETVEVQDVDEAWR  589 (720)
Q Consensus       565 rla~A~A~l~----~~~~V~~~Dv~~Ai~  589 (720)
                      .-|-|.+++.    ....|+.+|++..+.
T Consensus       235 Dea~a~~~~~~~~~~~~~i~~~di~~~i~  263 (268)
T d1r6bx2         235 DEAGARARLMPVSKRKKTVNVADIESVVA  263 (268)
T ss_dssp             HHHHHHHHHSSSCCCCCSCCHHHHHHHHH
T ss_pred             HHHHHHHHhhccccCcccCCHHHHHHHHH
Confidence            8888888875    235588888877654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.65  E-value=1.5e-08  Score=102.06  Aligned_cols=94  Identities=10%  Similarity=0.021  Sum_probs=67.1

Q ss_pred             CChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCH
Q psy17703        478 LPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYP  557 (720)
Q Consensus       478 l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~  557 (720)
                      ..+++.+||+..+.+.++..++....+.         ..+..+.  ....+++++.+.+.+......       .....+
T Consensus       192 ~~~~~~~r~~~~i~f~~y~~~el~~Il~---------~r~~~~~--~~~~~~~~al~~ia~~~~~~~-------~~~gd~  253 (287)
T d1w5sa2         192 KIPQVESQIGFKLHLPAYKSRELYTILE---------QRAELGL--RDTVWEPRHLELISDVYGEDK-------GGDGSA  253 (287)
T ss_dssp             HCHHHHTTCSEEEECCCCCHHHHHHHHH---------HHHHHHB--CTTSCCHHHHHHHHHHHCGGG-------TSCCCH
T ss_pred             hccchhcccceeeeccCCcHHHHHHHHh---------hhHHHhh--ccCCCCHHHHHHHHHHHhccc-------cCCCCH
Confidence            4578899999888888887766544433         2332221  234578999888876543221       112357


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCHHhHHHHHH
Q psy17703        558 RQLESLIRLSEAHAKMRYSETVEVQDVDEAWR  589 (720)
Q Consensus       558 R~le~lirla~A~A~l~~~~~V~~~Dv~~Ai~  589 (720)
                      |....+++.|...|..+++..|+.+||++|+.
T Consensus       254 R~ai~~l~~a~~~A~~~~~~~It~~~V~~A~~  285 (287)
T d1w5sa2         254 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVS  285 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Confidence            99999999999999999999999999999975

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=98.59  E-value=9.5e-10  Score=113.75  Aligned_cols=130  Identities=10%  Similarity=0.131  Sum_probs=64.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC-CCccccCCccccccccceeecCccccceeeecceee--ecCCceeeccccccCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP-RSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALV--LADSGVCCIDEFDKMS  422 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p-r~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~--lad~gI~~IDEidkm~  422 (720)
                      -++||+||||||||.|++++|..+. +..+.+-.++...+        .+.|++.-+-..+.  .....|+||||||.+.
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~--------~~~G~~e~~~~~~f~~a~~~~ilf~DEid~~~  195 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS--------GYNTDFNVFVDDIARAMLQHRVIVIDSLKNVI  195 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSST--------TCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhh--------cccchHHHHHHHHHHHHhhccEEEeehhhhhc
Confidence            4677799999999999999999763 22222211111111        11111110000000  0125699999999987


Q ss_pred             hHHHHHHHHHHHhceEeee---ccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhh------ccceeEEEec
Q psy17703        423 DTTRSILHEVMEQQTLSIA---KAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLL------SRFDLIFLLL  493 (720)
Q Consensus       423 ~~~~~~L~e~mE~~~vsi~---k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLl------sRFdli~~l~  493 (720)
                      ..-.......+.++.++.-   -.|.  ..+.++.||||+||..              +++++.      .|||..+.+.
T Consensus       196 ~~r~~~~~~~~~~r~v~~lL~e~dg~--~~~~~v~viaatN~~~--------------~~~~i~~~~~r~~Rf~~~v~v~  259 (321)
T d1w44a_         196 GAAGGNTTSGGISRGAFDLLSDIGAM--AASRGCVVIASLNPTS--------------NDDKIVELVKEASRSNSTSLVI  259 (321)
T ss_dssp             -----------CCHHHHHHHHHHHHH--HHHHTCEEEEECCCCC--------------CCHHHHHHHHHHHHHSCSEEEE
T ss_pred             cccccCCCCCcchhhhhhhhhhcccc--ccCCCeEEEEeCCCcc--------------cccchhhhhhccCcccceeecC
Confidence            6432222222211111100   0111  1234689999999753              444443      5999887777


Q ss_pred             CCChHH
Q psy17703        494 DPQSEQ  499 (720)
Q Consensus       494 d~~~~~  499 (720)
                      .|+.+.
T Consensus       260 ~pd~~~  265 (321)
T d1w44a_         260 STDVDG  265 (321)
T ss_dssp             ECSSTT
T ss_pred             CCChHH
Confidence            665443

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.49  E-value=3.3e-07  Score=91.00  Aligned_cols=89  Identities=17%  Similarity=0.145  Sum_probs=48.2

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCCCcccc-CCccccccccceeecCc-ccc----ceee-ecceeeecCCceeecccc
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPRSQYTS-GKGSSAVGLTAYITKDP-ETR----QMVL-QTGALVLADSGVCCIDEF  418 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~-g~~ss~~glta~~~~~~-~~~----~~~~-~~G~l~lad~gI~~IDEi  418 (720)
                      -|+||+||||||||++++++++.+...++.. +..............+. ...    .+.. ...........++++||+
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~  132 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEV  132 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSG
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeec
Confidence            4899999999999999999999875433211 11100000000000000 000    0000 000111123448999999


Q ss_pred             ccCChHHHHHHHHHHH
Q psy17703        419 DKMSDTTRSILHEVME  434 (720)
Q Consensus       419 dkm~~~~~~~L~e~mE  434 (720)
                      +.+....+..+...++
T Consensus       133 ~~~~~~~~~~~~~~~~  148 (253)
T d1sxja2         133 DGMSGGDRGGVGQLAQ  148 (253)
T ss_dssp             GGCCTTSTTHHHHHHH
T ss_pred             cccccchhhhhHHHhh
Confidence            9999888777766665

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.38  E-value=5e-07  Score=97.52  Aligned_cols=124  Identities=19%  Similarity=0.261  Sum_probs=82.1

Q ss_pred             CCceeeccccccCC------------hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCccccccc
Q psy17703        409 DSGVCCIDEFDKMS------------DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNI  476 (720)
Q Consensus       409 d~gI~~IDEidkm~------------~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~  476 (720)
                      .+|+.++||+++..            +..+..++..+|..++.. +.|...+-  ...++++.-+..         ....
T Consensus       249 ~~~~~~~dei~k~~~~~~~~g~d~~~eg~~~~ll~~~e~~~v~~-~~~~~~~~--~~l~i~~~~~~~---------~~~~  316 (443)
T d1g41a_         249 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-KHGMVKTD--HILFIASGAFQV---------ARPS  316 (443)
T ss_dssp             HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEE-TTEEEECT--TCEEEEEECCSS---------CCGG
T ss_pred             ccCccccchhhhhhhcccCCCCCcccchhhhhhhhhcccccccc-cccccccc--chhhccccchhh---------cccc
Confidence            45789999998853            224556777777777764 44433322  234455433322         2345


Q ss_pred             CCChhhhccceeEEEecCCChHHHHHHHHhhcchhHHHHHHHHHH-hhcCCcchHHHHHHHHHHHHHhhh
Q psy17703        477 RLPHTLLSRFDLIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQ-EHLSPTLSEEASQRLIQTYVDMRK  545 (720)
Q Consensus       477 ~l~~aLlsRFdli~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar-~~~~p~ls~ea~~~l~~~y~~lr~  545 (720)
                      .|-|.|.-||.+++.+.+...++.-+.|..- ...+++.|...-. ..+.-.++++|.+.+++.-.++..
T Consensus       317 gliPEliGRlPi~v~L~~L~~~dL~rILtEP-knsLikQy~~lf~~~gv~L~ft~~al~~iA~~A~~~n~  385 (443)
T d1g41a_         317 DLIPELQGRLPIRVELTALSAADFERILTEP-HASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNE  385 (443)
T ss_dssp             GSCHHHHTTCCEEEECCCCCHHHHHHHHHSS-TTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHH
T ss_pred             cchhhhccceEEEEEccCccHHHHHHHHHhh-hhhHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhhh
Confidence            6889999999999999999888777666532 2336677665443 346667899999999887776543

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.26  E-value=4.5e-07  Score=87.27  Aligned_cols=118  Identities=14%  Similarity=0.166  Sum_probs=70.8

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCC-------CccccCCccccccccceeecCccccceeeecceeeecCCceeecc
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPR-------SQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCID  416 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr-------~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~ID  416 (720)
                      ...++||+||||+|||+++..+++..-.       ..+....+ ...+..  .+++ ........|   ..+...|++||
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~-~~I~Id--~IR~-i~~~~~~~~---~~~~~KviIId   86 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-ENIGID--DIRT-IKDFLNYSP---ELYTRKYVIVH   86 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-SCBCHH--HHHH-HHHHHTSCC---SSSSSEEEEET
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCc-CCCCHH--HHHH-HHHHHhhCc---ccCCCEEEEEe
Confidence            3579999999999999999999885521       11111110 001100  0010 000011111   12234599999


Q ss_pred             ccccCChHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCC
Q psy17703        417 EFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDP  495 (720)
Q Consensus       417 Eidkm~~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~  495 (720)
                      |+|+|+.+.+++|+..||+-             |.++.++-++|-..             .++++++||+- ++.+..|
T Consensus        87 ~ad~l~~~aqNaLLK~LEEP-------------p~~t~fiLit~~~~-------------~ll~TI~SRC~-~i~~~~p  138 (198)
T d2gnoa2          87 DCERMTQQAANAFLKALEEP-------------PEYAVIVLNTRRWH-------------YLLPTIKSRVF-RVVVNVP  138 (198)
T ss_dssp             TGGGBCHHHHHHTHHHHHSC-------------CTTEEEEEEESCGG-------------GSCHHHHTTSE-EEECCCC
T ss_pred             CccccchhhhhHHHHHHhCC-------------CCCceeeeccCChh-------------hCHHHHhcceE-EEeCCCc
Confidence            99999999999999999962             23344444444221             58999999994 5556544

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.24  E-value=1.2e-06  Score=92.69  Aligned_cols=201  Identities=16%  Similarity=0.181  Sum_probs=94.4

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCC-ccccCCccccccccce--eecCccccceeeeccee----eecCC-ceeec
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRS-QYTSGKGSSAVGLTAY--ITKDPETRQMVLQTGAL----VLADS-GVCCI  415 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~-~~~~g~~ss~~glta~--~~~~~~~~~~~~~~G~l----~lad~-gI~~I  415 (720)
                      +.-|++|+||||+|||.++..++..+-.+ +.....+.....+..+  +....+.|+|.-+--.+    ..+.+ -|+||
T Consensus        42 ~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfi  121 (387)
T d1qvra2          42 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFI  121 (387)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred             CCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccCcchhHHHHHHHHHHHhccCCCceEEEe
Confidence            56789999999999999998887643111 0000111111111111  00011223332111111    11222 36899


Q ss_pred             cccccCCh--------HHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703        416 DEFDKMSD--------TTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD  487 (720)
Q Consensus       416 DEidkm~~--------~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd  487 (720)
                      ||++.+-.        +.-+.|..+|..+               .+.+|||+.|...+         .+.=.++|.+||.
T Consensus       122 de~h~l~~~g~~~g~~d~a~~Lkp~L~rg---------------~~~~I~~tT~~ey~---------~~e~d~al~rrF~  177 (387)
T d1qvra2         122 DELHTVVGAGKAEGAVDAGNMLKPALARG---------------ELRLIGATTLDEYR---------EIEKDPALERRFQ  177 (387)
T ss_dssp             CCC-------------------HHHHHTT---------------CCCEEEEECHHHHH---------HHTTCTTTCSCCC
T ss_pred             ccHHHHhcCCCCCCcccHHHHHHHHHhCC---------------CcceeeecCHHHHH---------HhcccHHHHHhcc
Confidence            99987732        2234455555544               35678888865422         1223689999998


Q ss_pred             eEEEecCCChHHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHHH
Q psy17703        488 LIFLLLDPQSEQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRLS  567 (720)
Q Consensus       488 li~~l~d~~~~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirla  567 (720)
                       .+.+..|+.++.-.+|..         ....-..+....++++|....++.-..  -  ...   ..-|-....++.-|
T Consensus       178 -~v~v~ep~~~~~~~il~~---------~~~~~e~~h~v~~~~~ai~~~v~ls~r--y--i~~---r~~PdKAidlld~a  240 (387)
T d1qvra2         178 -PVYVDEPTVEETISILRG---------LKEKYEVHHGVRISDSAIIAAATLSHR--Y--ITE---RRLPDKAIDLIDEA  240 (387)
T ss_dssp             -CEEECCCCHHHHHHHHHH---------HHHHHHHHTTCEECHHHHHHHHHHHHH--H--CCS---SCTHHHHHHHHHHH
T ss_pred             -cccCCCCcHHHHHHHHHH---------HHHHHHhccCCcccHHHHHHHHHhccc--c--ccc---ccChhhHHHHHHHH
Confidence             556666666654444332         121112233566777777665532111  0  001   12245566676666


Q ss_pred             HHHHHHcCCCCCCHHhHHHH
Q psy17703        568 EAHAKMRYSETVEVQDVDEA  587 (720)
Q Consensus       568 ~A~A~l~~~~~V~~~Dv~~A  587 (720)
                      .|.+++.  ....+++++..
T Consensus       241 ~a~~~i~--~~s~P~el~~l  258 (387)
T d1qvra2         241 AARLRMA--LESAPEEIDAL  258 (387)
T ss_dssp             HHHHHHT--TTTHHHHHHHH
T ss_pred             HHHHHhh--ccCCcHHHHHH
Confidence            6666664  34445555443

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.24  E-value=8.9e-07  Score=86.16  Aligned_cols=163  Identities=17%  Similarity=0.272  Sum_probs=89.8

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeeccee-----eecCCceeeccccccC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGAL-----VLADSGVCCIDEFDKM  421 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l-----~lad~gI~~IDEidkm  421 (720)
                      +++|+|+||+|||.|++++++.+...    +  .....+++.........  .+..+..     .+....++|||+++.+
T Consensus        38 ~l~l~G~~G~GKTHLl~A~~~~~~~~----~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~dll~iDDi~~i  109 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLLQAAGNEAKKR----G--YRVIYSSADDFAQAMVE--HLKKGTINEFRNMYKSVDLLLLDDVQFL  109 (213)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHHHT----T--CCEEEEEHHHHHHHHHH--HHHHTCHHHHHHHHHTCSEEEEECGGGG
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhccC----c--cceEEechHHHHHHHHH--HHHccchhhHHHHHhhccchhhhhhhhh
Confidence            49999999999999999999865211    0  01111111100000000  0000000     0224578999999988


Q ss_pred             C--hHHHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce--eEEEecCCCh
Q psy17703        422 S--DTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD--LIFLLLDPQS  497 (720)
Q Consensus       422 ~--~~~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd--li~~l~d~~~  497 (720)
                      .  +..+..|...++...            ..+..+|.|++-.+..++         .+.+.|.|||-  +++.+ .|++
T Consensus       110 ~~~~~~~~~lf~lin~~~------------~~~~~iiits~~~p~~l~---------~~~~dL~SRL~~g~~~~i-~p~d  167 (213)
T d1l8qa2         110 SGKERTQIEFFHIFNTLY------------LLEKQIILASDRHPQKLD---------GVSDRLVSRFEGGILVEI-ELDN  167 (213)
T ss_dssp             TTCHHHHHHHHHHHHHHH------------HTTCEEEEEESSCGGGCT---------TSCHHHHHHHHTSEEEEC-CCCH
T ss_pred             cCchHHHHHHHHHHHHHh------------hccceEEEecCCcchhcc---------ccchHHHHHhhCceEEEE-CCCc
Confidence            5  455666776665321            223445555553332221         25688999997  66666 4555


Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHhhhcCCCCCCcccCHHHHHHHHHH
Q psy17703        498 EQFDARLARHLDITVLRDYIAYAQEHLSPTLSEEASQRLIQTYVDMRKLGAGRGRISAYPRQLESLIRL  566 (720)
Q Consensus       498 ~~~d~~la~~i~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lr~~~~~~~~~~~t~R~le~lirl  566 (720)
                      +...+.         +++   +|.. -...+++++.+.|....              -++|.|+++++.
T Consensus       168 ~~~~~i---------L~~---~a~~-rgl~l~~~v~~yl~~~~--------------~~~R~L~~~l~~  209 (213)
T d1l8qa2         168 KTRFKI---------IKE---KLKE-FNLELRKEVIDYLLENT--------------KNVREIEGKIKL  209 (213)
T ss_dssp             HHHHHH---------HHH---HHHH-TTCCCCHHHHHHHHHHC--------------SSHHHHHHHHHH
T ss_pred             HHHHHH---------HHH---HHHH-cCCCCCHHHHHHHHHhc--------------CcHHHHHHHHHH
Confidence            433222         222   2332 35779999999887431              135889887764

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.16  E-value=2.3e-07  Score=88.54  Aligned_cols=131  Identities=16%  Similarity=0.236  Sum_probs=71.3

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCcc-ccCCccccccccce--eecCccccceeeecceee---ecC--Cceeec
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQY-TSGKGSSAVGLTAY--ITKDPETRQMVLQTGALV---LAD--SGVCCI  415 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~-~~g~~ss~~glta~--~~~~~~~~~~~~~~G~l~---lad--~gI~~I  415 (720)
                      ..-|++|+||||+|||.+++.+|........ ..........+..+  +....+.|+|.-+--.+.   .+.  +-|+||
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfI  121 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFI  121 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEE
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEc
Confidence            5679999999999999999999885421100 00111111111110  001112233321111110   122  338999


Q ss_pred             cccccCChH--------HHHHHHHHHHhceEeeeccCeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccce
Q psy17703        416 DEFDKMSDT--------TRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFD  487 (720)
Q Consensus       416 DEidkm~~~--------~~~~L~e~mE~~~vsi~k~g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFd  487 (720)
                      ||++.+-..        .-+.|..+|+.+.               +.+|||+.|...        ...+.-.++|.+||.
T Consensus       122 Deih~l~~~g~~~g~~d~~~~Lkp~L~rg~---------------l~~IgatT~eey--------~~~~e~d~aL~rrF~  178 (195)
T d1jbka_         122 DELHTMVGAGKADGAMDAGNMLKPALARGE---------------LHCVGATTLDEY--------RQYIEKDAALERRFQ  178 (195)
T ss_dssp             ETGGGGTT------CCCCHHHHHHHHHTTS---------------CCEEEEECHHHH--------HHHTTTCHHHHTTEE
T ss_pred             chHHHHhcCCCCCCcccHHHHHHHHHhCCC---------------ceEEecCCHHHH--------HHHHHcCHHHHhcCC
Confidence            999887332        2356777776544               556888876542        123456799999998


Q ss_pred             eEEEecCCChH
Q psy17703        488 LIFLLLDPQSE  498 (720)
Q Consensus       488 li~~l~d~~~~  498 (720)
                       .+.+..|+.+
T Consensus       179 -~I~V~Ep~~e  188 (195)
T d1jbka_         179 -KVFVAEPSVE  188 (195)
T ss_dssp             -EEECCCCCHH
T ss_pred             -EeecCCCCHH
Confidence             4555555544

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=97.97  E-value=2e-06  Score=89.18  Aligned_cols=65  Identities=23%  Similarity=0.369  Sum_probs=61.2

Q ss_pred             hhcccccCCCcccccccccCChhhHHHHHHhhhcceEEeeecceeEEEcccceEEeecCCCCCCC
Q psy17703        654 KGALVLADSGVCCIDEFDKMSDTTRSILHEVMEQQTLSIAKAGIICQLNARTSILAAANPCDSQW  718 (720)
Q Consensus       654 ~~alv~ad~~~~~idE~~~l~~~~r~~i~e~l~~q~~~i~k~g~~~~l~~~~~~~~~~~p~~~~~  718 (720)
                      .|.+..++.|+.|+||+.+++++...+|+++||+++++|+++|...++++++.++||+||..|++
T Consensus       120 ~G~l~~A~~gvl~iDEi~~~~~~~~~aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~~~l  184 (333)
T d1g8pa_         120 PGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDL  184 (333)
T ss_dssp             CCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCC
T ss_pred             ccccccccccEeecccHHHHHHHHHHHHhhhhcCCeEEecccCceecCCCCEEEEEecCcccccc
Confidence            46677888999999999999999999999999999999999999999999999999999998864

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.86  E-value=9.5e-06  Score=84.96  Aligned_cols=35  Identities=17%  Similarity=0.212  Sum_probs=29.0

Q ss_pred             hcCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCcc
Q psy17703        340 QETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQY  374 (720)
Q Consensus       340 QE~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~  374 (720)
                      ...|..-.+||+||||||||++++++++.+...++
T Consensus       149 ~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i  183 (362)
T d1svma_         149 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKAL  183 (362)
T ss_dssp             HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred             hCCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence            44566678999999999999999999998865443

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=97.69  E-value=3.8e-05  Score=72.68  Aligned_cols=123  Identities=20%  Similarity=0.254  Sum_probs=75.3

Q ss_pred             hcCCCCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccc
Q psy17703        340 QETPAEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFD  419 (720)
Q Consensus       340 QE~pg~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEid  419 (720)
                      +..|..--++|+|||+||||.++.++.+.+...+.......               ..+.+.+    +++..++++||+.
T Consensus        48 ~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis~~N~~---------------s~F~Lq~----l~~~kv~l~dD~t  108 (205)
T d1tuea_          48 KGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST---------------SHFWLEP----LTDTKVAMLDDAT  108 (205)
T ss_dssp             HTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS---------------SCGGGGG----GTTCSSEEEEEEC
T ss_pred             cCCCCceEEEEECCCCccHHHHHHHHHHHhCCEEEeccCCC---------------CCccccc----ccCCeEEEEeccc
Confidence            44567778999999999999999999988743221111111               1122222    4567899999987


Q ss_pred             cCChHHHHH-HHHHHHhceEeeeccCe-EEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEec
Q psy17703        420 KMSDTTRSI-LHEVMEQQTLSIAKAGI-ICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLL  493 (720)
Q Consensus       420 km~~~~~~~-L~e~mE~~~vsi~k~g~-~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~  493 (720)
                      .+.....+. |..+++-..+++...+. ...+.. .-++-|+|-.....+          -..+|.+|.- +|.+.
T Consensus       109 ~~~~~~~d~~lK~ll~G~~vsvd~KhK~~vqi~~-pPliITsN~~~~~~d----------~~~~L~sRi~-~f~F~  172 (205)
T d1tuea_         109 TTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKC-PPILLTTNIHPAKDN----------RWPYLESRIT-VFEFP  172 (205)
T ss_dssp             HHHHHHHHHHCHHHHHTCCEEEC----CCEEECC-CCEEEEESSCTTSSS----------SCHHHHTSCE-EEECC
T ss_pred             cchHHHHHHHHHhccCCCeeeeecccCCcccccC-CCEEEEcCCCCCccc----------cchhhhheEE-EEECC
Confidence            766555444 67788888888864433 222222 236678886554322          2367888884 56665

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.59  E-value=0.00039  Score=68.37  Aligned_cols=26  Identities=31%  Similarity=0.556  Sum_probs=23.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      ..|||+||||||||+|++++++.+..
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~~~~   58 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEETQG   58 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            46999999999999999999997743

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.59  E-value=0.00057  Score=62.26  Aligned_cols=28  Identities=36%  Similarity=0.638  Sum_probs=25.5

Q ss_pred             CCCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        343 PAEINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       343 pg~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      |..+||+|.|+||+|||++++.+++.++
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            4579999999999999999999999875

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=96.59  E-value=0.0021  Score=63.64  Aligned_cols=150  Identities=14%  Similarity=0.177  Sum_probs=86.1

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCCCccccCCccccccccceeecCccccceeeecceeeecCCceeeccccccCCh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPRSQYTSGKGSSAVGLTAYITKDPETRQMVLQTGALVLADSGVCCIDEFDKMSD  423 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr~~~~~g~~ss~~glta~~~~~~~~~~~~~~~G~l~lad~gI~~IDEidkm~~  423 (720)
                      ...-++|+|||+||||+++.++.+.++.........                ..+.+.    .+.+.-++++||...-. 
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~lg~~~~~~~~~----------------~~f~l~----~l~~k~~~~~~e~~~~~-  161 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTN----------------ENFPFN----DCVDKMVIWWEEGKMTA-  161 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHSSCEEECCTTC----------------SSCTTG----GGSSCSEEEECSCCEET-
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHHhcchhhccccC----------------CCcccc----ccCCCEEEEEeCCCccc-
Confidence            345678999999999999999999886421111000                011111    13456788899976543 


Q ss_pred             HHHHHHHHHHHhceEeeecc-CeEEeecCceEEEecccCCCCCCCCCcccccccCCChhhhccceeEEEecCCChHHHHH
Q psy17703        424 TTRSILHEVMEQQTLSIAKA-GIICQLNARTSILAAANPCDSQWNTSKTIIDNIRLPHTLLSRFDLIFLLLDPQSEQFDA  502 (720)
Q Consensus       424 ~~~~~L~e~mE~~~vsi~k~-g~~~~l~a~~~iiaaaNp~~g~~~~~~~~~~~~~l~~aLlsRFdli~~l~d~~~~~~d~  502 (720)
                      ...+.+..++.-..+++... .....+...+.+|.+.|......+....   ...-..+|.+|+- +|.+..+-..+.  
T Consensus       162 ~~~~~~K~l~gGd~i~v~~K~k~~~~~~~~p~li~s~n~i~~~~~~~~~---~~~~~~~l~~R~~-~~~F~~~~p~~~--  235 (267)
T d1u0ja_         162 KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNST---TFEHQQPLQDRMF-KFELTRRLDHDF--  235 (267)
T ss_dssp             TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEE---ECTTHHHHHTTEE-EEECCSCCCTTS--
T ss_pred             cHHHHHHHhcCCCceEeecccCCCcEeeCCeEEEEeCCCcccccCCCcc---ccccchHhhhhEE-EEECCCcCCCcc--
Confidence            34557788888888887643 3345666677888888865421110000   0012368999985 555543221111  


Q ss_pred             HHHhhcchhHHHHHHHHHHhh
Q psy17703        503 RLARHLDITVLRDYIAYAQEH  523 (720)
Q Consensus       503 ~la~~i~~~~l~~~i~~ar~~  523 (720)
                         .-+..+.++.++..+++.
T Consensus       236 ---~~i~~~e~k~f~~W~~~~  253 (267)
T d1u0ja_         236 ---GKVTKQEVKDFFRWAKDH  253 (267)
T ss_dssp             ---CCCCHHHHHHHHHHHHHT
T ss_pred             ---CCCCHHHHHHHHHHHHhc
Confidence               124455677777777754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00042  Score=63.39  Aligned_cols=24  Identities=25%  Similarity=0.578  Sum_probs=22.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      -||+|+||||||||+|++.+++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            389999999999999999999866

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.00086  Score=59.88  Aligned_cols=26  Identities=27%  Similarity=0.290  Sum_probs=23.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      -+|+|+|+||+|||++++.+++.+..
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~   28 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNM   28 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            37999999999999999999998754

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.28  E-value=0.001  Score=60.76  Aligned_cols=25  Identities=16%  Similarity=0.254  Sum_probs=22.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -.|+|.|+||+|||+|++.+++.+.
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3799999999999999999999774

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.27  E-value=0.00075  Score=61.85  Aligned_cols=26  Identities=23%  Similarity=0.644  Sum_probs=23.2

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      .+|+|+||||+|||+|++.+++.++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             CEEEEECCCCcHHHHHHHHHHhcCCC
Confidence            37999999999999999999997753

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.26  E-value=0.00072  Score=61.17  Aligned_cols=27  Identities=22%  Similarity=0.340  Sum_probs=23.5

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCCCCcc
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVPRSQY  374 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~pr~~~  374 (720)
                      |+|.|+||+|||++++.+++.++...+
T Consensus         5 I~i~G~~GsGKTTva~~L~~~~~~~~~   31 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQLDNSAY   31 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSSSEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence            789999999999999999998865433

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.04  E-value=0.0013  Score=59.50  Aligned_cols=25  Identities=36%  Similarity=0.415  Sum_probs=22.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+|+|+|+||+|||++++.+++.+.
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Confidence            3789999999999999999998764

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.53  E-value=0.0025  Score=57.74  Aligned_cols=26  Identities=15%  Similarity=0.174  Sum_probs=23.3

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +.-|+|+|.||+|||++++.+++.+.
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            46799999999999999999998764

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.49  E-value=0.0034  Score=56.74  Aligned_cols=26  Identities=23%  Similarity=0.465  Sum_probs=23.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRS  372 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~  372 (720)
                      =|+|.|+||+|||++++.+++.++..
T Consensus         5 iI~l~G~~GsGKsTva~~L~~~l~~~   30 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQSVLPEP   30 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            37899999999999999999998743

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.33  E-value=0.0041  Score=57.70  Aligned_cols=27  Identities=19%  Similarity=0.249  Sum_probs=23.8

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..+.|+|+||||+|||++++.+++.+.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g   28 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFC   28 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            467899999999999999999998653

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.32  E-value=0.004  Score=55.11  Aligned_cols=23  Identities=35%  Similarity=0.408  Sum_probs=19.8

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      |+|+|+||+|||++++.+.+..+
T Consensus         5 Iii~G~pGsGKTTla~~L~~~~~   27 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAKNP   27 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHST
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            78999999999999998876544

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.27  E-value=0.0038  Score=56.53  Aligned_cols=25  Identities=32%  Similarity=0.478  Sum_probs=22.1

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      --|+|.|+||+|||++++.+++.++
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~lg   29 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANLPG   29 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3488999999999999999998764

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.19  E-value=0.0042  Score=56.87  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=22.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .+|+|.|+||+|||++++.+++.+.
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~~~~   25 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVAAYG   25 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Confidence            3689999999999999999998763

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.13  E-value=0.0042  Score=56.31  Aligned_cols=25  Identities=28%  Similarity=0.262  Sum_probs=22.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      ||.|+|+||+|||++++.+|+.+..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~   26 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDL   26 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCC
Confidence            6899999999999999999998753

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.0034  Score=58.01  Aligned_cols=24  Identities=17%  Similarity=0.284  Sum_probs=21.7

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      .-|+|+|+||+|||++++.+++.+
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999865

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.0044  Score=55.89  Aligned_cols=23  Identities=30%  Similarity=0.332  Sum_probs=20.4

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ++|+|+||+|||++++.+++.+.
T Consensus         9 ivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            56799999999999999998764

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.97  E-value=0.0053  Score=56.42  Aligned_cols=25  Identities=24%  Similarity=0.422  Sum_probs=22.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ++|+|.|+||+|||++++.+++.+.
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Confidence            4799999999999999999998763

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=94.94  E-value=0.005  Score=56.13  Aligned_cols=25  Identities=12%  Similarity=0.147  Sum_probs=22.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      +|+|+|+||+|||++++.+|+.+..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg~   28 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALGY   28 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCC
Confidence            6889999999999999999987754

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.88  E-value=0.006  Score=55.28  Aligned_cols=26  Identities=23%  Similarity=0.307  Sum_probs=22.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPRS  372 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr~  372 (720)
                      +|.|+|+||+|||++++.+++.+...
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~~~   28 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALGVG   28 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            57889999999999999999987543

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.73  E-value=0.0066  Score=56.23  Aligned_cols=26  Identities=12%  Similarity=0.341  Sum_probs=23.1

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..+|+|.||||+|||++++.+++.+.
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHC
Confidence            35799999999999999999998764

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=94.55  E-value=0.0079  Score=55.30  Aligned_cols=24  Identities=29%  Similarity=0.416  Sum_probs=21.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +|+|.|+||+|||++++.+++.+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            689999999999999999998764

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.36  E-value=0.0086  Score=55.54  Aligned_cols=25  Identities=16%  Similarity=0.263  Sum_probs=21.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .-|+|+||||+|||++++.+++.+.
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~~~g   31 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHC
Confidence            3579999999999999999998653

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.35  E-value=0.01  Score=54.52  Aligned_cols=26  Identities=23%  Similarity=0.414  Sum_probs=23.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .+.|+|.|+||+|||++++.+++.+.
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~~g   27 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQERFH   27 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46799999999999999999998653

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.20  E-value=0.011  Score=54.98  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=21.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      =|+|.||||+|||++++.+++.+.
T Consensus        10 iI~i~GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            378899999999999999999764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.12  E-value=0.011  Score=54.12  Aligned_cols=24  Identities=21%  Similarity=0.391  Sum_probs=21.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +|+|.|+||+|||++++.+++...
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999998764

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.10  E-value=0.0098  Score=55.45  Aligned_cols=23  Identities=17%  Similarity=0.286  Sum_probs=20.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      =|+|+|.||+|||++++.+++.+
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999999855

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=94.04  E-value=0.012  Score=54.66  Aligned_cols=26  Identities=19%  Similarity=0.331  Sum_probs=23.3

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -.+|+|+|+||+|||++++.+++...
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~~g   31 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKHFE   31 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHHC
Confidence            46899999999999999999998664

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=93.78  E-value=0.013  Score=52.50  Aligned_cols=23  Identities=22%  Similarity=0.263  Sum_probs=20.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      .+.++|+||+|||+|++.+++.+
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            37899999999999999998765

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.014  Score=53.93  Aligned_cols=24  Identities=17%  Similarity=0.346  Sum_probs=21.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -|+|.||||+|||+.++.+++.+.
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~g   26 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKYG   26 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            479999999999999999998664

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.66  E-value=0.016  Score=53.80  Aligned_cols=24  Identities=21%  Similarity=0.342  Sum_probs=21.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -|+|.||||+|||++++.+++...
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~~g   33 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQKYG   33 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            488999999999999999998653

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=93.60  E-value=0.016  Score=51.09  Aligned_cols=22  Identities=23%  Similarity=0.308  Sum_probs=19.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +.|+|+|+||+|||+|++.+..
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4689999999999999998865

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.56  E-value=0.014  Score=53.34  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=19.5

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..=|+|+|+||+|||++++.++.
T Consensus        14 p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999987754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.54  E-value=0.014  Score=52.74  Aligned_cols=23  Identities=17%  Similarity=0.339  Sum_probs=20.8

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      -|++.|+||+|||++++.+++.+
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~~l   25 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMDNL   25 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999998865

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=93.33  E-value=0.019  Score=51.01  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=21.5

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .+++|+|+|+||+|||+|++++..
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHhC
Confidence            368899999999999999998865

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=92.95  E-value=0.021  Score=51.12  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=20.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +++|+++|+||+|||+|++.+..
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHcC
Confidence            57899999999999999998753

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=92.62  E-value=0.018  Score=54.02  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=20.2

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      |.+.||||+|||++++.+++.+.
T Consensus         6 I~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            56669999999999999999774

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=92.52  E-value=0.026  Score=54.42  Aligned_cols=27  Identities=19%  Similarity=0.084  Sum_probs=23.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      .-+++++||+|+|||+|++.+++..+.
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~~~   55 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINELNL   55 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHCCC
Confidence            358999999999999999999876643

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.41  E-value=0.032  Score=51.35  Aligned_cols=25  Identities=36%  Similarity=0.600  Sum_probs=22.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      +|.|+||+|+|||+|++.+++..|.
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~~~   27 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEYPD   27 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCc
Confidence            6899999999999999999988774

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.20  E-value=0.033  Score=48.90  Aligned_cols=21  Identities=24%  Similarity=0.407  Sum_probs=18.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      -|+|+|+||+|||+|+..+..
T Consensus         2 KI~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            379999999999999998875

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.06  E-value=0.036  Score=49.88  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=20.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ++-|+|+|++|+|||+|++.+..
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHh
Confidence            67899999999999999987764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=91.92  E-value=0.031  Score=50.59  Aligned_cols=23  Identities=30%  Similarity=0.510  Sum_probs=20.6

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ++|.|+||+|||++++.+++.++
T Consensus         4 ivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999998774

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.90  E-value=0.028  Score=52.84  Aligned_cols=26  Identities=19%  Similarity=0.217  Sum_probs=22.5

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      .+.|.+-||||+|||++++.+++.+.
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35677889999999999999998764

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.75  E-value=0.037  Score=51.20  Aligned_cols=25  Identities=28%  Similarity=0.489  Sum_probs=22.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      +|.|+||+|+|||+|++.+++..|.
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~~   26 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHSS   26 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCC
Confidence            5899999999999999999887664

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.48  E-value=0.052  Score=49.54  Aligned_cols=25  Identities=20%  Similarity=0.452  Sum_probs=22.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      -|.|+||+|+|||++++.+.+..|.
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~~~~   28 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRERIPN   28 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCC
Confidence            4789999999999999999988774

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.47  E-value=0.042  Score=49.09  Aligned_cols=22  Identities=18%  Similarity=0.418  Sum_probs=19.1

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +.|+|+|+||+|||+|++.+..
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999986653

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.36  E-value=0.05  Score=49.58  Aligned_cols=30  Identities=13%  Similarity=0.163  Sum_probs=24.7

Q ss_pred             cCCCCccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        341 ETPAEINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       341 E~pg~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +..+.+=|-+.|++|+|||++++++++.+.
T Consensus        18 ~~~~~~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            344666688999999999999999988654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=91.29  E-value=0.045  Score=49.20  Aligned_cols=23  Identities=17%  Similarity=0.252  Sum_probs=20.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ...|+++|+||+|||+|+..+..
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            57999999999999999998864

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.79  E-value=0.055  Score=48.81  Aligned_cols=21  Identities=38%  Similarity=0.526  Sum_probs=18.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .|+++|+||+|||+|++.+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            589999999999999987754

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=90.75  E-value=0.053  Score=54.68  Aligned_cols=28  Identities=21%  Similarity=0.730  Sum_probs=25.2

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      +..|||+.|++|+|||++++++....|.
T Consensus       165 ~~~nili~G~tgSGKTT~l~al~~~i~~  192 (323)
T d1g6oa_         165 IGKNVIVCGGTGSGKTTYIKSIMEFIPK  192 (323)
T ss_dssp             HTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             hCCCEEEEeeccccchHHHHHHhhhccc
Confidence            4568999999999999999999998875

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=90.61  E-value=0.046  Score=49.14  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=20.9

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ....|+|+|+||+|||+|+.++..
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            357899999999999999988754

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=90.61  E-value=0.057  Score=47.72  Aligned_cols=23  Identities=26%  Similarity=0.531  Sum_probs=20.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      +.|+|+|+||+|||+|++++.+.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            67999999999999999998753

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=90.51  E-value=0.06  Score=46.48  Aligned_cols=27  Identities=15%  Similarity=0.138  Sum_probs=19.6

Q ss_pred             cCCceeeccccccCChHHHHHHHHHHH
Q psy17703        408 ADSGVCCIDEFDKMSDTTRSILHEVME  434 (720)
Q Consensus       408 ad~gI~~IDEidkm~~~~~~~L~e~mE  434 (720)
                      .+-+++++||++.++.+....+..+++
T Consensus        93 ~~~~~vIiDE~H~~~~~~~~~~~~~l~  119 (136)
T d1a1va1          93 GAYDIIICDECHSTDATSILGIGTVLD  119 (136)
T ss_dssp             CCCSEEEEETTTCCSHHHHHHHHHHHH
T ss_pred             hcCCEEEEecccccCHHHHHHHHHHHH
Confidence            345789999999998876555555544

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.47  E-value=0.058  Score=49.47  Aligned_cols=24  Identities=17%  Similarity=0.050  Sum_probs=20.2

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      --+++.||||+|||+|+..++...
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHH
Confidence            468899999999999998877543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.43  E-value=0.068  Score=50.34  Aligned_cols=24  Identities=29%  Similarity=0.108  Sum_probs=20.1

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .+--++|.|+||+|||+|+..++.
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            345789999999999999987764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=90.39  E-value=0.041  Score=49.67  Aligned_cols=29  Identities=21%  Similarity=0.440  Sum_probs=22.9

Q ss_pred             hhcCCC--CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        339 LQETPA--EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       339 lQE~pg--~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +|..|.  ..+|.|+|.|++|||+|++++..
T Consensus         8 ~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_           8 IRHLPSDTGIEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             GGGSSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             hhHCCCccCCEEEEECCCCCCHHHHHHHHhC
Confidence            344553  47999999999999999988743

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=90.36  E-value=0.055  Score=48.29  Aligned_cols=23  Identities=17%  Similarity=0.327  Sum_probs=20.3

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ++.|+|+|+||+|||+|+..+..
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHc
Confidence            46899999999999999998764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.29  E-value=0.064  Score=47.91  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=19.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .-|+|+|+||+|||+|++.+..
T Consensus         4 ~Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           4 YKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999988765

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.25  E-value=0.063  Score=48.23  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=19.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..-|+|+|+||+|||+|++.+..
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            35699999999999999987764

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=90.20  E-value=0.06  Score=50.63  Aligned_cols=25  Identities=24%  Similarity=0.254  Sum_probs=21.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      ..-|+|.|.||+|||++++.+++.+
T Consensus        24 g~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          24 GLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4569999999999999999998754

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.18  E-value=0.066  Score=47.88  Aligned_cols=21  Identities=19%  Similarity=0.354  Sum_probs=18.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      -|+|+|+||+|||+|++.+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999987754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=90.18  E-value=0.061  Score=48.38  Aligned_cols=23  Identities=35%  Similarity=0.455  Sum_probs=20.5

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHH
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVY  366 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va  366 (720)
                      ..+.|+++|+||+|||+|++.+.
T Consensus        15 ~~~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          15 QEVRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHh
Confidence            46899999999999999998773

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.07  E-value=0.095  Score=49.74  Aligned_cols=25  Identities=24%  Similarity=0.278  Sum_probs=20.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      +--+++.||||+|||+|+-.++...
T Consensus        36 G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          36 QAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4468999999999999998776543

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=90.04  E-value=0.047  Score=49.23  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=20.4

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHH
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVY  366 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va  366 (720)
                      ..++|+++|+||+|||+|++.+.
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh
Confidence            36899999999999999999764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.04  E-value=0.095  Score=48.56  Aligned_cols=22  Identities=18%  Similarity=0.214  Sum_probs=19.9

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      +|+|+|+||+|||+|++.+..-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999998763

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=90.00  E-value=0.065  Score=50.87  Aligned_cols=24  Identities=33%  Similarity=0.394  Sum_probs=20.5

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      ..-+++.||||+|||+|+..++..
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            346889999999999999888764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.99  E-value=0.068  Score=48.03  Aligned_cols=22  Identities=23%  Similarity=0.594  Sum_probs=19.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +.|+++|+||+|||+|++.+..
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHc
Confidence            4689999999999999988754

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.91  E-value=0.13  Score=45.84  Aligned_cols=21  Identities=33%  Similarity=0.485  Sum_probs=18.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      -|+|+|+||+|||+|++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999987765

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.88  E-value=0.061  Score=48.96  Aligned_cols=25  Identities=28%  Similarity=0.387  Sum_probs=21.2

Q ss_pred             CCCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        343 PAEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       343 pg~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      |..+-|+++|++|+|||+|++.+..
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHh
Confidence            3468899999999999999987654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=89.78  E-value=0.089  Score=48.25  Aligned_cols=21  Identities=24%  Similarity=0.452  Sum_probs=19.8

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .|.|+|+||+|||+|++++.+
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHhcC
Confidence            799999999999999999974

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.73  E-value=0.075  Score=47.47  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=19.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..|+++|+||+|||+|+..+..
T Consensus         4 ~Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           4 YKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999988764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.63  E-value=0.068  Score=47.82  Aligned_cols=23  Identities=30%  Similarity=0.544  Sum_probs=20.1

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ++.|+|+|++|+|||+|++.+..
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHh
Confidence            46799999999999999988764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.62  E-value=0.074  Score=47.96  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=19.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .+.|+++|+||+|||+|++.+..
T Consensus         6 ~~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           6 THKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            46899999999999999987654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.61  E-value=0.077  Score=47.99  Aligned_cols=22  Identities=41%  Similarity=0.646  Sum_probs=19.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +.|+++|+||+|||+|++.+..
T Consensus         8 iKi~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           8 LKILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5799999999999999998764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=89.53  E-value=0.3  Score=43.44  Aligned_cols=20  Identities=30%  Similarity=0.600  Sum_probs=18.5

Q ss_pred             EEEEcCCCCHHHHHHHHHHh
Q psy17703        348 ILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~  367 (720)
                      |.++|+||+|||+|++.+..
T Consensus         3 V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           3 VLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999874

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.44  E-value=0.11  Score=34.41  Aligned_cols=29  Identities=21%  Similarity=0.736  Sum_probs=22.4

Q ss_pred             hheeecccCCceeeeeeccCcccCCccCCCCCCCCc
Q psy17703        286 EAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHC  321 (720)
Q Consensus       286 ~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~  321 (720)
                      +..|+|..||+...     |  ..|..||-|+....
T Consensus         3 ~~~~~C~vCG~i~~-----g--~~P~~CPvCg~~~~   31 (37)
T d1nnqa2           3 KKVYICPICGYTAV-----D--EAPEYCPVCGAPKE   31 (37)
T ss_dssp             SCEEECTTTCCEEE-----S--CCCSBCTTTCCBGG
T ss_pred             CcEEECCCCCCEec-----C--CCCCcCCCCCCcHH
Confidence            35799999998874     2  36789999997544

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.42  E-value=0.074  Score=47.66  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=19.5

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +..|+++|+||+|||+|++.+..
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHh
Confidence            35689999999999999987754

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.38  E-value=0.085  Score=47.13  Aligned_cols=22  Identities=23%  Similarity=0.344  Sum_probs=19.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..|+++|++|+|||+|++.+..
T Consensus         4 ~KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           4 YKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            4689999999999999988764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.34  E-value=0.083  Score=47.29  Aligned_cols=22  Identities=23%  Similarity=0.428  Sum_probs=19.1

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +-|+++|++|+|||+|+..+..
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            6789999999999999987653

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.21  E-value=0.086  Score=47.29  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=19.0

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      -|+|+|+||+|||+|++.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998875

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.19  E-value=0.089  Score=47.13  Aligned_cols=21  Identities=29%  Similarity=0.449  Sum_probs=18.8

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      -|+++|+||+|||+|++.+..
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            489999999999999998765

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.15  E-value=0.15  Score=46.66  Aligned_cols=21  Identities=43%  Similarity=0.583  Sum_probs=18.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      -|+++|+||+|||+|++.+..
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhh
Confidence            489999999999999987765

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.10  E-value=0.091  Score=47.06  Aligned_cols=21  Identities=24%  Similarity=0.406  Sum_probs=18.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      -|+++|+||+|||+|++.+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999988764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.09  E-value=0.091  Score=46.64  Aligned_cols=21  Identities=24%  Similarity=0.341  Sum_probs=18.8

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .|+++|++|+|||+|++.+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999987764

>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF0610-like
domain: Hypothetical protein PF0610
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.09  E-value=0.085  Score=43.37  Aligned_cols=24  Identities=25%  Similarity=0.814  Sum_probs=20.0

Q ss_pred             ecccCCceeeeeeccCcccCCccCCCCCC
Q psy17703        290 RCIVCNYSTTVEIDRGRIHEPTLCTNCST  318 (720)
Q Consensus       290 ~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~  318 (720)
                      +|.+||+++.     ..+..|..||.|++
T Consensus        69 ~CrkCGfvFr-----~~~kkPSRCP~CKS   92 (105)
T d2gmga1          69 QCRKCGFVFK-----AEINIPSRCPKCKS   92 (105)
T ss_dssp             BBTTTCCBCC-----CCSSCCSSCSSSCC
T ss_pred             hhhhcCCeec-----ccCCCCCCCCCCCC
Confidence            7999999752     35788999999997

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.05  E-value=0.082  Score=48.10  Aligned_cols=22  Identities=36%  Similarity=0.551  Sum_probs=19.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +.|+++|+||+|||+|++.+..
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCcCHHHHHHHHhc
Confidence            4689999999999999988764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.00  E-value=0.088  Score=46.89  Aligned_cols=22  Identities=45%  Similarity=0.649  Sum_probs=19.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +.|+++|+||+|||+|++.+..
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999998765

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.99  E-value=0.089  Score=47.80  Aligned_cols=21  Identities=24%  Similarity=0.597  Sum_probs=18.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .|+++|+||+|||+|++.+..
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999987764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.97  E-value=0.092  Score=46.62  Aligned_cols=21  Identities=14%  Similarity=0.387  Sum_probs=18.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .|+++|++|+|||+|++.+..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            379999999999999998764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=88.91  E-value=0.086  Score=49.58  Aligned_cols=25  Identities=16%  Similarity=0.145  Sum_probs=21.1

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      +--++|.|+||+|||+++..++..+
T Consensus        34 G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          34 QSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3468999999999999998887644

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.90  E-value=0.093  Score=48.35  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=19.9

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      -.|+|+|+||+|||+|+.++..
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~   25 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTT   25 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3689999999999999999975

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=88.79  E-value=0.082  Score=54.03  Aligned_cols=35  Identities=20%  Similarity=0.203  Sum_probs=26.2

Q ss_pred             cchhhhhhhhcCCCCccEEEEcCCCCHHHHHHHHH
Q psy17703        331 FTDKQLVRLQETPAEINILLCGDPGTSKSQLLSYV  365 (720)
Q Consensus       331 ~~d~Q~iklQE~pg~i~vLL~G~PGtGKS~ll~~v  365 (720)
                      ..++|..-++-.-.+--++|.|+||||||+++..+
T Consensus       149 ~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         149 EINWQKVAAAVALTRRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             SCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHH
T ss_pred             cccHHHHHHHHHHcCCeEEEEcCCCCCceehHHHH
Confidence            35788866665445567899999999999987544

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.68  E-value=0.16  Score=45.60  Aligned_cols=22  Identities=41%  Similarity=0.617  Sum_probs=19.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..|+++|+||+|||+|++.+..
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3689999999999999987765

>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=88.66  E-value=0.17  Score=34.88  Aligned_cols=31  Identities=26%  Similarity=0.658  Sum_probs=23.3

Q ss_pred             hheeecccCCceeeeeeccCcccCCccCCCCCCCCcc
Q psy17703        286 EAFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNHCF  322 (720)
Q Consensus       286 ~~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~~~  322 (720)
                      ...++|.+||+...-.      ..|..||.|+....+
T Consensus         6 ~~~W~C~~CGyi~~g~------~aP~~CPvC~~p~~~   36 (44)
T d1lkoa2           6 ATKWRCRNCGYVHEGT------GAPELCPACAHPKAH   36 (44)
T ss_dssp             EEEEEETTTCCEEEEE------ECCSBCTTTCCBGGG
T ss_pred             CeEEEcCCCCcEEECC------CCCCcCCCCCCcHHH
Confidence            3479999999887532      467899999986543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.55  E-value=0.092  Score=47.38  Aligned_cols=21  Identities=24%  Similarity=0.411  Sum_probs=19.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .|+|+|+||+|||+|+.++.+
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            479999999999999999875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.46  E-value=0.1  Score=46.66  Aligned_cols=21  Identities=38%  Similarity=0.550  Sum_probs=18.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      -|+++|++|+|||+|++.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhC
Confidence            378999999999999998764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=88.46  E-value=0.11  Score=46.61  Aligned_cols=21  Identities=24%  Similarity=0.369  Sum_probs=18.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      -|+++|++|+|||+|++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999988754

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.42  E-value=0.1  Score=46.42  Aligned_cols=22  Identities=23%  Similarity=0.194  Sum_probs=19.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +.|+|+|++|+|||+|++.+..
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5789999999999999988754

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.39  E-value=0.91  Score=41.63  Aligned_cols=24  Identities=21%  Similarity=0.337  Sum_probs=21.1

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      |-+.|++|+|||++++.+++.+..
T Consensus         5 IgI~G~~gSGKSTla~~L~~~l~~   28 (213)
T d1uj2a_           5 IGVSGGTASGKSSVCAKIVQLLGQ   28 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhch
Confidence            568899999999999999988753

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.22  E-value=0.11  Score=49.23  Aligned_cols=24  Identities=21%  Similarity=0.012  Sum_probs=20.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      +--+++.|+||+|||+|+..++..
T Consensus        37 G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          37 MAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999888754

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=88.22  E-value=0.18  Score=48.73  Aligned_cols=25  Identities=24%  Similarity=0.406  Sum_probs=22.6

Q ss_pred             CCCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        343 PAEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       343 pg~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ...++|+|+|.||+|||+|+.++..
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhC
Confidence            3678999999999999999999975

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.00  E-value=0.12  Score=46.48  Aligned_cols=21  Identities=38%  Similarity=0.577  Sum_probs=18.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      -|+|+|+||+|||+|+..+..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999987753

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.95  E-value=0.12  Score=46.65  Aligned_cols=21  Identities=24%  Similarity=0.352  Sum_probs=18.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      -|+++|++|+|||+|+..+..
T Consensus         4 KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            479999999999999987664

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.83  E-value=0.12  Score=46.48  Aligned_cols=21  Identities=29%  Similarity=0.487  Sum_probs=18.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      -|+|+|++|+|||+|++.+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            589999999999999988764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=87.71  E-value=0.085  Score=47.79  Aligned_cols=22  Identities=32%  Similarity=0.526  Sum_probs=19.8

Q ss_pred             CCccEEEEcCCCCHHHHHHHHH
Q psy17703        344 AEINILLCGDPGTSKSQLLSYV  365 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~v  365 (720)
                      ..+.|+++|+||+|||+|++.+
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l   37 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRL   37 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHT
T ss_pred             ceEEEEEECCCCCCHHHHHHHH
Confidence            3689999999999999999876

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.61  E-value=0.13  Score=46.20  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=18.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .|+++|+||+|||+|+..+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999977654

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=87.59  E-value=0.17  Score=33.31  Aligned_cols=27  Identities=26%  Similarity=0.675  Sum_probs=21.2

Q ss_pred             heeecccCCceeeeeeccCcccCCccCCCCCCCC
Q psy17703        287 AFFRCIVCNYSTTVEIDRGRIHEPTLCTNCSTNH  320 (720)
Q Consensus       287 ~~f~C~~Cg~~~~~~~~~~~~~~p~~C~~C~~~~  320 (720)
                      ..|.|+.||+...     |  ..|..||-|+...
T Consensus         4 ~~~vC~vCGyi~~-----g--~~Pe~CPvCg~~~   30 (36)
T d1yuza2           4 KFHLCPICGYIHK-----G--EDFEKCPICFRPK   30 (36)
T ss_dssp             CEEECSSSCCEEE-----S--SCCSBCTTTCCBG
T ss_pred             CEEECCCCCCEee-----C--CCCCcCCCCCCcH
Confidence            4689999998864     3  3688999999753

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.50  E-value=0.12  Score=46.99  Aligned_cols=22  Identities=23%  Similarity=0.344  Sum_probs=19.3

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +.|+++|++|+|||+|++.+..
T Consensus        10 ~Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          10 LKCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhh
Confidence            5799999999999999987654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=87.23  E-value=0.16  Score=45.87  Aligned_cols=24  Identities=25%  Similarity=0.546  Sum_probs=21.5

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..+.|.++|.||+|||+|+.++.+
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHC
Confidence            358999999999999999999874

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.08  E-value=0.15  Score=45.63  Aligned_cols=21  Identities=38%  Similarity=0.629  Sum_probs=18.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      -|+++|+||+|||+|++.+..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999987654

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.02  E-value=0.14  Score=45.70  Aligned_cols=21  Identities=14%  Similarity=0.135  Sum_probs=18.7

Q ss_pred             EEEcCCCCHHHHHHHHHHhhC
Q psy17703        349 LLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       349 LL~G~PGtGKS~ll~~va~~~  369 (720)
                      -++|.+|+|||+|+..+.+.+
T Consensus         5 ~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           5 QVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             EEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHH
Confidence            489999999999999888765

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.91  E-value=0.15  Score=45.64  Aligned_cols=22  Identities=27%  Similarity=0.511  Sum_probs=19.0

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ..|+|+|++|+|||+|++.+..
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4689999999999999987654

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=86.82  E-value=0.17  Score=47.31  Aligned_cols=26  Identities=19%  Similarity=0.303  Sum_probs=22.7

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      .-++|+||+|+|||+|.+.+.+..|.
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~p~   28 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQPL   28 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCc
Confidence            34789999999999999999988773

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.66  E-value=0.2  Score=45.49  Aligned_cols=25  Identities=16%  Similarity=0.368  Sum_probs=22.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      .|.|+||+|+|||+|++.+.+..|.
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~~~~   29 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITKHPD   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHhCCc
Confidence            5889999999999999999887764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.57  E-value=0.1  Score=46.94  Aligned_cols=20  Identities=35%  Similarity=0.516  Sum_probs=9.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHH
Q psy17703        347 NILLCGDPGTSKSQLLSYVY  366 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va  366 (720)
                      -|+++|+||+|||+|++.+.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~   27 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFS   27 (173)
T ss_dssp             EEEEECCCCC----------
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            48999999999999998664

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=86.38  E-value=0.15  Score=47.47  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=17.9

Q ss_pred             CccEEEEcCCCCHHHHHHHHHH
Q psy17703        345 EINILLCGDPGTSKSQLLSYVY  366 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va  366 (720)
                      .--++|.|+||+|||+|+..++
T Consensus        26 G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          26 GRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHH
Confidence            3468899999999999986544

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.31  E-value=0.16  Score=46.44  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=18.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +-|+|+|++|+|||+|++.+..
T Consensus         4 iKvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           4 IKCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            5789999999999999876654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=86.11  E-value=0.17  Score=47.63  Aligned_cols=22  Identities=18%  Similarity=0.380  Sum_probs=19.7

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      |++.|+||.|||+|++.+.+.+
T Consensus         3 i~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Confidence            7899999999999999998754

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.02  E-value=0.072  Score=46.98  Aligned_cols=23  Identities=26%  Similarity=0.572  Sum_probs=20.2

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      +.|.|+|+||+|||+|++++...
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999753

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=85.98  E-value=0.16  Score=47.28  Aligned_cols=25  Identities=20%  Similarity=0.300  Sum_probs=21.6

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      -+.|+||.|+|||+|++.++.+.++
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~~p   53 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYLKP   53 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred             EEEEECCCCChHHHHHHHHhccccc
Confidence            4678999999999999999887653

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.80  E-value=0.12  Score=46.43  Aligned_cols=20  Identities=30%  Similarity=0.557  Sum_probs=17.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHH
Q psy17703        347 NILLCGDPGTSKSQLLSYVY  366 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va  366 (720)
                      -|+++|+||+|||+|++.+.
T Consensus         5 Ki~vvG~~~vGKTsli~~~~   24 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHL   24 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            58999999999999987653

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.76  E-value=0.16  Score=46.20  Aligned_cols=20  Identities=35%  Similarity=0.527  Sum_probs=18.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHH
Q psy17703        346 INILLCGDPGTSKSQLLSYV  365 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~v  365 (720)
                      +.|+|+|++|+|||+|+..+
T Consensus         3 iKivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            57899999999999999887

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.73  E-value=0.18  Score=45.01  Aligned_cols=21  Identities=33%  Similarity=0.498  Sum_probs=19.4

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .|.|+|.||+|||+|++++.+
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999975

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.69  E-value=0.18  Score=45.57  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=18.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      -|+|+|++|+|||+|++.+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            579999999999999976654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=85.59  E-value=0.19  Score=45.22  Aligned_cols=21  Identities=29%  Similarity=0.507  Sum_probs=19.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .|.|+|.||+|||+|++++.+
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            599999999999999999875

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.39  E-value=0.18  Score=45.62  Aligned_cols=23  Identities=26%  Similarity=0.413  Sum_probs=20.4

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ++.|+++|++|+|||+|++.+..
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHh
Confidence            58999999999999999987654

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.35  E-value=0.21  Score=47.81  Aligned_cols=24  Identities=29%  Similarity=0.454  Sum_probs=20.5

Q ss_pred             EEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      +-|+||.|+|||+|++.++.+.++
T Consensus        27 ~~liGpnGaGKSTll~~i~Gl~~p   50 (240)
T d2onka1          27 CVLLGPTGAGKSVFLELIAGIVKP   50 (240)
T ss_dssp             EEEECCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEECCCCChHHHHHHHHHcCCCC
Confidence            347899999999999999987753

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.33  E-value=0.21  Score=47.58  Aligned_cols=24  Identities=29%  Similarity=0.457  Sum_probs=21.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+-|+||.|+|||+|++.++.+.+
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl~~   51 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGLET   51 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            477899999999999999988764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=85.26  E-value=0.21  Score=47.51  Aligned_cols=24  Identities=17%  Similarity=0.346  Sum_probs=21.1

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+-|+||.|+|||+|++.++.+.+
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCcHHHHHHHHhcCcC
Confidence            367899999999999999998765

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=85.17  E-value=0.13  Score=50.40  Aligned_cols=23  Identities=17%  Similarity=0.322  Sum_probs=17.4

Q ss_pred             ccEEEEcCCCCHHHHHH-HHHHhh
Q psy17703        346 INILLCGDPGTSKSQLL-SYVYDL  368 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll-~~va~~  368 (720)
                      -|+|+.|+||||||+.+ ..++.+
T Consensus        15 ~~~lI~g~aGTGKTt~l~~rv~~l   38 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVITNKIAHL   38 (306)
T ss_dssp             SEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEeeCCccHHHHHHHHHHHH
Confidence            47999999999999754 444443

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=85.15  E-value=0.15  Score=45.85  Aligned_cols=21  Identities=33%  Similarity=0.471  Sum_probs=18.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      +|.|+|.||+|||+|++++.+
T Consensus         3 ~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999998853

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=84.98  E-value=0.19  Score=48.23  Aligned_cols=26  Identities=23%  Similarity=0.252  Sum_probs=22.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      +-.+.++|+.|+|||+|++.+..+.+
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            34789999999999999999987665

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.93  E-value=0.3  Score=46.18  Aligned_cols=22  Identities=27%  Similarity=0.282  Sum_probs=18.7

Q ss_pred             CccEEEEcCCCCHHHHHHHHHH
Q psy17703        345 EINILLCGDPGTSKSQLLSYVY  366 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va  366 (720)
                      +.-..|+|++|+|||+|+.++.
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHS
T ss_pred             CCeEEEECCCCCCHHHHHHhhc
Confidence            3456789999999999999884

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.61  E-value=0.2  Score=47.63  Aligned_cols=25  Identities=24%  Similarity=0.277  Sum_probs=21.1

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      =-+-|+||.|+|||+|++.++.+.+
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~gl~~   56 (230)
T d1l2ta_          32 EFVSIMGPSGSGKSTMLNIIGCLDK   56 (230)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCcchhhHhccCCCC
Confidence            3578999999999999999976554

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=84.30  E-value=0.22  Score=46.61  Aligned_cols=23  Identities=17%  Similarity=0.245  Sum_probs=17.7

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      --++|+||+|+|||+.+--+|..
T Consensus         7 ~vi~lvGptGvGKTTTiaKLA~~   29 (207)
T d1okkd2           7 RVVLVVGVNGVGKTTTIAKLGRY   29 (207)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            35788999999999876555543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=84.10  E-value=0.26  Score=47.17  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=21.2

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+-|+||.|+|||+|++.++.+.+
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhcCCC
Confidence            477899999999999999987664

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=84.07  E-value=0.23  Score=48.44  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=20.9

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLV  369 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~  369 (720)
                      ..|.|+|.+|+|||+||+.+.+..
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhh
Confidence            467899999999999999997653

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=83.98  E-value=0.28  Score=43.76  Aligned_cols=26  Identities=27%  Similarity=0.341  Sum_probs=23.0

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      ..-|+|.||=|+|||+++|.+++.+.
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhcc
Confidence            34599999999999999999999774

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=83.95  E-value=0.21  Score=46.87  Aligned_cols=21  Identities=29%  Similarity=0.295  Sum_probs=12.7

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      -|+|+||||+|||+.+--+|.
T Consensus        14 vi~lvGptGvGKTTTiAKLA~   34 (211)
T d1j8yf2          14 VIMLVGVQGTGKATTAGKLAY   34 (211)
T ss_dssp             EEEEECSCCC----HHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999987655554

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=83.85  E-value=0.24  Score=46.30  Aligned_cols=21  Identities=19%  Similarity=0.191  Sum_probs=16.7

Q ss_pred             EEEEcCCCCHHHHHHHHHHhh
Q psy17703        348 ILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       348 vLL~G~PGtGKS~ll~~va~~  368 (720)
                      ++|+||+|+|||+.+--+|..
T Consensus        13 i~lvGp~GvGKTTTiaKLA~~   33 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLALY   33 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            578999999999876666543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=83.71  E-value=0.24  Score=46.57  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=17.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      .-++|+||+|+|||+.+--+|..
T Consensus        12 ~vi~lvGptGvGKTTTiAKLAa~   34 (213)
T d1vmaa2          12 FVIMVVGVNGTGKTTSCGKLAKM   34 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999876555543

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.48  E-value=0.24  Score=47.88  Aligned_cols=25  Identities=24%  Similarity=0.398  Sum_probs=21.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -.+-|+||.|+|||+|++.++.+.+
T Consensus        42 e~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             CEEEEECCCCChHHHHHHHHhcccC
Confidence            4689999999999999999987654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.29  E-value=0.29  Score=46.76  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=21.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+-|+||.|+|||+|++.++.+.+
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHHcCCC
Confidence            477999999999999999988764

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.29  E-value=0.27  Score=48.15  Aligned_cols=24  Identities=21%  Similarity=0.426  Sum_probs=21.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+.|+||.|+|||+|++.++.+.+
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCChHHHHHHHHhCCCc
Confidence            488999999999999999998765

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=83.06  E-value=0.26  Score=46.20  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=17.3

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      -++|+||+|+|||+.+--+|..
T Consensus        11 vi~lvGptGvGKTTTiAKLA~~   32 (211)
T d2qy9a2          11 VILMVGVNGVGKTTTIGKLARQ   32 (211)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4778999999999876555543

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.00  E-value=0.26  Score=47.56  Aligned_cols=25  Identities=24%  Similarity=0.307  Sum_probs=21.7

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -.+-|+|+.|+|||+|++.+..+.+
T Consensus        41 e~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhcccC
Confidence            4688999999999999999987654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=82.90  E-value=0.26  Score=47.25  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=21.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      --+.|+||.|+|||+|++.++.+..
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhC
Confidence            4688999999999999999987664

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=82.84  E-value=0.66  Score=41.61  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=21.8

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      ++||-++|.|+.|||+|+.++.+.
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHHh
Confidence            579999999999999999999864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=82.75  E-value=0.26  Score=47.24  Aligned_cols=26  Identities=15%  Similarity=0.225  Sum_probs=22.4

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      --+-|+||.|+|||+|++.++.+.++
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl~~p   57 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGLDVP   57 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCcCC
Confidence            35789999999999999999987653

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=82.71  E-value=0.26  Score=47.13  Aligned_cols=24  Identities=29%  Similarity=0.249  Sum_probs=20.8

Q ss_pred             cEEEEcCCCCHHHHHHHHHHhhCC
Q psy17703        347 NILLCGDPGTSKSQLLSYVYDLVP  370 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~~~p  370 (720)
                      -+-|+||.|+|||+|++.++.+.+
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl~~   56 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLLER   56 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCcc
Confidence            467899999999999999987654

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=82.64  E-value=0.27  Score=47.25  Aligned_cols=24  Identities=21%  Similarity=0.122  Sum_probs=19.7

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      |.+ .+|+|+||+|||+|+-.++..
T Consensus        29 g~~-~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          29 GTV-GALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             TSE-EEEEESTTSSHHHHHHHHHHH
T ss_pred             CcE-EEEEeCCCCCHHHHHHHHHHH
Confidence            554 679999999999999887753

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=82.57  E-value=0.33  Score=44.11  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=20.8

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ++.-|||.|++|+|||+++-.+.+
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            467899999999999999987765

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=82.17  E-value=0.23  Score=48.87  Aligned_cols=23  Identities=22%  Similarity=0.361  Sum_probs=17.4

Q ss_pred             ccEEEEcCCCCHHHHHH-HHHHhh
Q psy17703        346 INILLCGDPGTSKSQLL-SYVYDL  368 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll-~~va~~  368 (720)
                      -|+|+.|+||||||+.+ ..++.+
T Consensus        25 g~~lV~g~aGSGKTt~l~~ri~~l   48 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVLTHRIAYL   48 (318)
T ss_dssp             SCEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEecCCccHHHHHHHHHHHH
Confidence            47999999999999765 444443

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.04  E-value=0.28  Score=44.37  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=20.6

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHhh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYDL  368 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~~  368 (720)
                      ++.|+|+|+.|+|||+|++.+..-
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            357999999999999999888654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=82.00  E-value=0.25  Score=44.56  Aligned_cols=21  Identities=43%  Similarity=0.507  Sum_probs=18.5

Q ss_pred             cEEEEcCCCCHHHHHHHHHHh
Q psy17703        347 NILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       347 ~vLL~G~PGtGKS~ll~~va~  367 (720)
                      .|-|+|+||+|||+|++++.+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999998754

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=81.64  E-value=0.48  Score=48.77  Aligned_cols=26  Identities=27%  Similarity=0.207  Sum_probs=22.5

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHhhCCC
Q psy17703        346 INILLCGDPGTSKSQLLSYVYDLVPR  371 (720)
Q Consensus       346 i~vLL~G~PGtGKS~ll~~va~~~pr  371 (720)
                      --||+.||+|+|||+++.++.+.+++
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~~~~  184 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQELNS  184 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             ceEEEEcCCCCCccHHHHHHhhhhcC
Confidence            45999999999999999998887654

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=81.01  E-value=0.4  Score=43.22  Aligned_cols=24  Identities=25%  Similarity=0.410  Sum_probs=20.7

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ++.-|||.|++|.|||+++-.+.+
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            467899999999999999877665

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=80.94  E-value=0.39  Score=43.61  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=20.8

Q ss_pred             CCccEEEEcCCCCHHHHHHHHHHh
Q psy17703        344 AEINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       344 g~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ++.-|||.|++|.|||+++-.+.+
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            467899999999999999987764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.02  E-value=0.34  Score=43.53  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=19.7

Q ss_pred             CccEEEEcCCCCHHHHHHHHHHh
Q psy17703        345 EINILLCGDPGTSKSQLLSYVYD  367 (720)
Q Consensus       345 ~i~vLL~G~PGtGKS~ll~~va~  367 (720)
                      ++.|+|+|+.|+|||+|++.+..
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhh
Confidence            46799999999999999987643