Psyllid ID: psy17704

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410--
RTNTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTKLRSDALLRPNTSHVPRDQHSQLTSALSFLSGDTSLAQWHGVKVKLHNISLDTKLRSDTLLRPNTSHVPRDQHSQLTSALSFLSGDTSSKPPSETKEPPERSKEPTDRLTEEPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKVKNESDKRFMNLDKQLYSKEKK
ccccccccccccccccccccHHHHHHHHccccccccccccccccccccEEEEccccccccHHHHHccccccEEEcccccccccccHHHHHHHHHccccccEEEEEEcccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccEEEEccEEEEEEEEEEcccccccccccccccccccccccccccEEEEEEcccEEEEEcccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEEccccEEEEEEEEEcccccccccccccccccccccccccEEEcHHHHHHHHccc
cEEEEEEcccccccccccccHHHHHHHHccccccccHHHHHHHHccccEEEEEcccccccHHHHHcccccEEEEEcccccccEcccHHHHHHHHcccEEEEEEEEcEccccccccHHHEcEcccccccccHHHHHHHHHHcHHHHHHHHHHHHccccccccccHHHHHHHHHccHHHHccccccHHHHHHHHHHHccccccEEEEEEcccEEEEEEEEEEccccccccccccEEEEEcccEEEEEccccEEEEEEcccccccccHHHHHHHHccccccccEccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEcccccEEEEEEEEcccEEEEEHEEEcccccEEEEEccccccccEcccccHHHHcHHHHHHccccc
RTNTLISKLevvsskegkhspviqfaqdekltlyrwpmdpdlikdnydigmvvsfghlipskiinafplgminvhgsilprwrgaapiVHAILhgdhetgisiirvrpkhfdrgeivrqyrcsispddtageLHNKLALVGGQLLLECVRdmprcvlnapaqpdegatyankidwSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDtklrsdallrpntshvprdqhsqLTSALSFLSGDTSLAQWHGVKVKLHNisldtklrsdtllrpntshvprdqhsQLTSALSflsgdtsskppsetkepperskeptdrlteepnpivpeltpgfvsfdrgskllrvrcvdgksilcSQITVAGKKKMTAVdfkngylgkvknesdkrFMNLDKQLYSKEKK
rtntlisklevvsskegkhspviqfaqdekltlyRWPMDPDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNapaqpdegatYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTKLRSDALLRPNTSHVPRDQHSQLTSALSFLSGDTSLAQWHGVKVKLHNISLDTKLRSDTLLRpntshvprdqhsQLTSALSflsgdtsskppsetkepperskeptdrlteepnpivpeltpgfvsfdRGSKLLRvrcvdgksilcsqitvagkkkmtavdfkngylgkvknesdkrfmnldkqlyskekk
RTNTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTKLRSDALLRPNTSHVPRDQHSQLTSALSFLSGDTSLAQWHGVKVKLHNISLDTKLRSDTLLRPNTSHVPRDQHSQLTSALSFLSGDtsskppsetkepperskeptDRLTEEPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKVKNESDKRFMNLDKQLYSKEKK
*********************VIQFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTKLR***********************LSFLSGDTSLAQWHGVKVKLHNISLDTK*****************************************************************LTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKV*********************
**NTLISKLEVVSS**GKHSPVIQFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDT*************HVPRDQHSQLTSALSFLSGDTSLAQWHG*************LRSDTLLRPNTSHVPRDQ*SQLTSALSFLSGDTSSK*****************************LTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKVKNESDKRFMN***********
RTNTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTKLRSDALLRPNTSHVPRDQHSQLTSALSFLSGDTSLAQWHGVKVKLHNISLDTKLRSDTLLRPNT**********LTSALSF*****************************EPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKVKNESDKRFMNLDKQLYSKEKK
RTNTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTKLRSDALLRPNTSHVPRDQHSQLTSALSFLSGDTSLAQWHGVKVKL*******KLRSDTLLRP*T*******************************************LTEEPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKVKNESDKRFMNLDKQLYS****
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ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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RTNTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTKLRSDALLRPNTSHVPRDQHSQLTSALSFLSGDTSLAQWHGVKVKLHNISLDTKLRSDTLLRPNTSHVPRDQHSQLTSALSFLSGDTSSKPPSETKEPPERSKEPTDRLTEEPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKVKNESDKRFMNLDKQLYSKEKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query412 2.2.26 [Sep-21-2011]
Q96DP5389 Methionyl-tRNA formyltran yes N/A 0.548 0.580 0.407 6e-47
Q5I0C5385 Methionyl-tRNA formyltran yes N/A 0.519 0.555 0.420 6e-45
Q9D799386 Methionyl-tRNA formyltran yes N/A 0.509 0.544 0.423 6e-44
O77480390 Methionyl-tRNA formyltran yes N/A 0.521 0.551 0.392 2e-42
Q83AA8314 Methionyl-tRNA formyltran yes N/A 0.373 0.490 0.448 2e-32
A9N9H5314 Methionyl-tRNA formyltran yes N/A 0.373 0.490 0.448 2e-32
A9KH14314 Methionyl-tRNA formyltran yes N/A 0.373 0.490 0.448 2e-32
B6J3C2314 Methionyl-tRNA formyltran yes N/A 0.373 0.490 0.448 2e-32
B6J655314 Methionyl-tRNA formyltran yes N/A 0.373 0.490 0.442 1e-31
Q98D53317 Methionyl-tRNA formyltran yes N/A 0.427 0.555 0.398 2e-29
>sp|Q96DP5|FMT_HUMAN Methionyl-tRNA formyltransferase, mitochondrial OS=Homo sapiens GN=MTFMT PE=2 SV=2 Back     alignment and function desciption
 Score =  188 bits (478), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 97/238 (40%), Positives = 140/238 (58%), Gaps = 12/238 (5%)

Query: 1   RTNTLISKLEVVS--SKEGKHSPVIQFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSFGHL 58
           +   LI KLEVV+  S   K  PV Q+A   +L +Y WP   D+    YD+G+V SFG L
Sbjct: 73  KEEELIDKLEVVTMPSPSPKGLPVKQYAVQSQLPVYEWP---DVGSGEYDVGVVASFGRL 129

Query: 59  IPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVR 118
           +   +I  FP G++NVH S LPRWRG AP++H +LHGD  TG++I+++RPK FD G I++
Sbjct: 130 LNEALILKFPYGILNVHPSCLPRWRGPAPVIHTVLHGDTVTGVTIMQIRPKRFDVGPILK 189

Query: 119 QYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYS 178
           Q    + P  TA EL   L+ +G  +L+  ++++P  + N   QP EGATYA KI    S
Sbjct: 190 QETVPVPPKSTAKELEAVLSRLGANMLISVLKNLPESLSNGRQQPMEGATYAPKISAGTS 249

Query: 179 VIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKL-------HNISLDTKLRSDALL 229
            I W   +S Q++ L+RA+G++ PL   W    +KL        ++  D KL   AL+
Sbjct: 250 CIKWEEQTSEQIFRLYRAIGNIIPLQTLWMANTIKLLDLVEVNSSVLADPKLTGQALI 307
Formylates methionyl-tRNA in mitochondria. A single tRNA(Met) gene gives rise to both an initiator and an elongator species via an unknown mechanism.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 2EC: .EC: 9
>sp|Q5I0C5|FMT_RAT Methionyl-tRNA formyltransferase, mitochondrial OS=Rattus norvegicus GN=Mtfmt PE=2 SV=1 Back     alignment and function description
>sp|Q9D799|FMT_MOUSE Methionyl-tRNA formyltransferase, mitochondrial OS=Mus musculus GN=Mtfmt PE=2 SV=3 Back     alignment and function description
>sp|O77480|FMT_BOVIN Methionyl-tRNA formyltransferase, mitochondrial OS=Bos taurus GN=MTFMT PE=1 SV=2 Back     alignment and function description
>sp|Q83AA8|FMT_COXBU Methionyl-tRNA formyltransferase OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=fmt PE=1 SV=1 Back     alignment and function description
>sp|A9N9H5|FMT_COXBR Methionyl-tRNA formyltransferase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=fmt PE=3 SV=1 Back     alignment and function description
>sp|A9KH14|FMT_COXBN Methionyl-tRNA formyltransferase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=fmt PE=3 SV=1 Back     alignment and function description
>sp|B6J3C2|FMT_COXB2 Methionyl-tRNA formyltransferase OS=Coxiella burnetii (strain CbuG_Q212) GN=fmt PE=3 SV=1 Back     alignment and function description
>sp|B6J655|FMT_COXB1 Methionyl-tRNA formyltransferase OS=Coxiella burnetii (strain CbuK_Q154) GN=fmt PE=3 SV=1 Back     alignment and function description
>sp|Q98D53|FMT_RHILO Methionyl-tRNA formyltransferase OS=Rhizobium loti (strain MAFF303099) GN=fmt PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query412
193712515354 PREDICTED: methionyl-tRNA formyltransfer 0.563 0.655 0.491 6e-63
328781279285 PREDICTED: methionyl-tRNA formyltransfer 0.548 0.792 0.458 3e-54
345478762356 PREDICTED: methionyl-tRNA formyltransfer 0.521 0.603 0.474 2e-53
340718258369 PREDICTED: LOW QUALITY PROTEIN: methiony 0.531 0.593 0.450 4e-53
380028057279 PREDICTED: LOW QUALITY PROTEIN: methiony 0.546 0.806 0.447 1e-52
91076878340 PREDICTED: similar to mitochondrial meth 0.582 0.705 0.425 9e-52
350401883331 PREDICTED: methionyl-tRNA formyltransfer 0.529 0.658 0.430 1e-50
383858716355 PREDICTED: methionyl-tRNA formyltransfer 0.516 0.6 0.432 8e-50
307198046317 Methionyl-tRNA formyltransferase, mitoch 0.512 0.665 0.438 1e-48
321469542324 hypothetical protein DAPPUDRAFT_318593 [ 0.519 0.660 0.446 2e-48
>gi|193712515|ref|XP_001943197.1| PREDICTED: methionyl-tRNA formyltransferase, mitochondrial-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  247 bits (631), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 114/232 (49%), Positives = 163/232 (70%)

Query: 1   RTNTLISKLEVVSSKEGKHSPVIQFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSFGHLIP 60
           RT T+ISK++VV++  G    V  FA++EKL +Y WP++  L+   YDIG+VVSFG LIP
Sbjct: 67  RTQTIISKVDVVTTSTGSGINVKSFAKEEKLDIYDWPVNTTLLDGKYDIGVVVSFGRLIP 126

Query: 61  SKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQY 120
            KII  FPLGMINVH S+LPRWRGAAPI++ IL+GD  +G++I+++ P+ FD GEIVRQ+
Sbjct: 127 EKIIKCFPLGMINVHASLLPRWRGAAPIIYTILNGDLTSGVTIMKIHPRRFDVGEIVRQH 186

Query: 121 RCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVI 180
            CS+  D+TA EL  KL+ +GG+LL++  +++ R +  A  Q ++G TYA K+D + S+I
Sbjct: 187 SCSVDKDETADELKKKLSDMGGRLLIDSFKELTRSLRYAVPQSEKGITYAPKVDKTLSII 246

Query: 181 DWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTKLRSDALLRPN 232
           DWN M S  VYN +RAL  ++PL+  WHG  VKL  + +     ++  L+P 
Sbjct: 247 DWNVMDSNSVYNKYRALCGLWPLITTWHGTSVKLLKVCIYQMSNAETQLQPG 298

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328781279|ref|XP_001122351.2| PREDICTED: methionyl-tRNA formyltransferase, mitochondrial-like [Apis mellifera] Back     alignment and taxonomy information
>gi|345478762|ref|XP_001605224.2| PREDICTED: methionyl-tRNA formyltransferase, mitochondrial-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|340718258|ref|XP_003397588.1| PREDICTED: LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase, mitochondrial-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|380028057|ref|XP_003697728.1| PREDICTED: LOW QUALITY PROTEIN: methionyl-tRNA formyltransferase, mitochondrial-like [Apis florea] Back     alignment and taxonomy information
>gi|91076878|ref|XP_974995.1| PREDICTED: similar to mitochondrial methionyl-tRNA formyltransferase [Tribolium castaneum] gi|270001958|gb|EEZ98405.1| hypothetical protein TcasGA2_TC000873 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|350401883|ref|XP_003486294.1| PREDICTED: methionyl-tRNA formyltransferase, mitochondrial-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383858716|ref|XP_003704845.1| PREDICTED: methionyl-tRNA formyltransferase, mitochondrial-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307198046|gb|EFN79099.1| Methionyl-tRNA formyltransferase, mitochondrial [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|321469542|gb|EFX80522.1| hypothetical protein DAPPUDRAFT_318593 [Daphnia pulex] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query412
UNIPROTKB|Q96DP5389 MTFMT "Methionyl-tRNA formyltr 0.538 0.570 0.412 7.7e-52
MGI|MGI:1916856386 Mtfmt "mitochondrial methionyl 0.548 0.585 0.405 7.7e-52
FB|FBgn0039836342 CG1750 [Drosophila melanogaste 0.519 0.625 0.418 2.6e-51
RGD|1309462385 Mtfmt "mitochondrial methionyl 0.531 0.568 0.413 5.4e-51
UNIPROTKB|F1NBQ0361 MTFMT "Uncharacterized protein 0.541 0.617 0.410 1.4e-50
UNIPROTKB|F1PSR5393 MTFMT "Uncharacterized protein 0.538 0.564 0.403 2.3e-50
UNIPROTKB|O77480390 MTFMT "Methionyl-tRNA formyltr 0.538 0.569 0.403 6.8e-49
UNIPROTKB|F1S1X2391 MTFMT "Uncharacterized protein 0.538 0.567 0.401 1.8e-48
UNIPROTKB|I3LFR9395 MTFMT "Uncharacterized protein 0.538 0.562 0.401 1.8e-48
ZFIN|ZDB-GENE-060929-120390 zgc:152651 "zgc:152651" [Danio 0.572 0.605 0.396 3.7e-46
UNIPROTKB|Q96DP5 MTFMT "Methionyl-tRNA formyltransferase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 469 (170.2 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
 Identities = 94/228 (41%), Positives = 140/228 (61%)

Query:     5 LISKLEVVS--SKEGKHSPVIQFAQDEKLTLYRWPMDPDLIKDNYDIGMVVSFGHLIPSK 62
             LI KLEVV+  S   K  PV Q+A   +L +Y WP   D+    YD+G+V SFG L+   
Sbjct:    77 LIDKLEVVTMPSPSPKGLPVKQYAVQSQLPVYEWP---DVGSGEYDVGVVASFGRLLNEA 133

Query:    63 IINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRC 122
             +I  FP G++NVH S LPRWRG AP++H +LHGD  TG++I+++RPK FD G I++Q   
Sbjct:   134 LILKFPYGILNVHPSCLPRWRGPAPVIHTVLHGDTVTGVTIMQIRPKRFDVGPILKQETV 193

Query:   123 SISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDW 182
              + P  TA EL   L+ +G  +L+  ++++P  + N   QP EGATYA KI    S I W
Sbjct:   194 PVPPKSTAKELEAVLSRLGANMLISVLKNLPESLSNGRQQPMEGATYAPKISAGTSCIKW 253

Query:   183 NTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHN-ISLDTKLRSDALL 229
                +S Q++ L+RA+G++ PL   W    +KL + + +++ + +D  L
Sbjct:   254 EEQTSEQIFRLYRAIGNIIPLQTLWMANTIKLLDLVEVNSSVLADPKL 301
GO:0008168 "methyltransferase activity" evidence=IEA
GO:0004479 "methionyl-tRNA formyltransferase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=IEA
MGI|MGI:1916856 Mtfmt "mitochondrial methionyl-tRNA formyltransferase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0039836 CG1750 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|1309462 Mtfmt "mitochondrial methionyl-tRNA formyltransferase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBQ0 MTFMT "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PSR5 MTFMT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O77480 MTFMT "Methionyl-tRNA formyltransferase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S1X2 MTFMT "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LFR9 MTFMT "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060929-120 zgc:152651 "zgc:152651" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.20.691
4th Layer2.1.2.9LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query412
cd08646204 cd08646, FMT_core_Met-tRNA-FMT_N, Methionyl-tRNA f 2e-61
COG0223307 COG0223, Fmt, Methionyl-tRNA formyltransferase [Tr 5e-53
PRK00005309 PRK00005, fmt, methionyl-tRNA formyltransferase; R 3e-51
TIGR00460313 TIGR00460, fmt, methionyl-tRNA formyltransferase 1e-49
pfam00551181 pfam00551, Formyl_trans_N, Formyl transferase 3e-27
cd08369173 cd08369, FMT_core, Formyltransferase, catalytic co 4e-27
cd08644203 cd08644, FMT_core_ArnA_N, ArnA, N-terminal formylt 2e-23
PRK08125 660 PRK08125, PRK08125, bifunctional UDP-glucuronic ac 3e-23
PLN02285334 PLN02285, PLN02285, methionyl-tRNA formyltransfera 6e-23
PRK06988312 PRK06988, PRK06988, putative formyltransferase; Pr 1e-22
cd08823177 cd08823, FMT_core_like_5, Formyl transferase catal 3e-17
cd08651180 cd08651, FMT_core_like_4, Formyl transferase catal 2e-15
cd08647203 cd08647, FMT_core_FDH_N, 10-formyltetrahydrofolate 3e-14
cd08653152 cd08653, FMT_core_like_3, Formyl transferase catal 4e-14
cd08645183 cd08645, FMT_core_GART, Phosphoribosylglycinamide 3e-12
COG0299200 COG0299, PurN, Folate-dependent phosphoribosylglyc 1e-10
cd08820173 cd08820, FMT_core_like_6, Formyl transferase catal 5e-10
PRK05647200 PRK05647, purN, phosphoribosylglycinamide formyltr 2e-08
cd08822192 cd08822, FMT_core_like_2, Formyl transferase catal 4e-08
PLN02331207 PLN02331, PLN02331, phosphoribosylglycinamide form 8e-06
cd08649166 cd08649, FMT_core_NRPS_like, N-terminal formyl tra 1e-05
PRK07579245 PRK07579, PRK07579, hypothetical protein; Provisio 3e-05
TIGR00639190 TIGR00639, PurN, phosphoribosylglycinamide formylt 5e-05
cd0870292 cd08702, Arna_FMT_C, C-terminal subdomain of the f 2e-04
pfam02911100 pfam02911, Formyl_trans_C, Formyl transferase, C-t 0.003
>gnl|CDD|187715 cd08646, FMT_core_Met-tRNA-FMT_N, Methionyl-tRNA formyltransferase, N-terminal hydrolase domain Back     alignment and domain information 
 Score =  196 bits (502), Expect = 2e-61
 Identities = 67/162 (41%), Positives = 100/162 (61%), Gaps = 7/162 (4%)

Query: 18  KHSPVIQFAQDEKLTLYRWP--MDPDLIKD----NYDIGMVVSFGHLIPSKIINAFPLGM 71
             SPV + A +  L + +     D + +++      D+ +VV++G ++P +I++  P G 
Sbjct: 44  TPSPVKELALELGLPVLQPEKLKDEEFLEELKALKPDLIVVVAYGQILPKEILDLPPYGC 103

Query: 72  INVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAG 131
           INVH S+LP++RGAAPI  AIL+GD ETG++I+++     D G+I+ Q    I PDDTAG
Sbjct: 104 INVHPSLLPKYRGAAPIQRAILNGDKETGVTIMKMDEG-LDTGDILAQEEVPIDPDDTAG 162

Query: 132 ELHNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKI 173
           EL +KLA +G  LLLE + D+    LN   Q +  ATYA KI
Sbjct: 163 ELLDKLAELGADLLLEVLDDIEAGKLNPVPQDESEATYAPKI 204

Methionyl-tRNA formyltransferase (Met-tRNA-FMT), N-terminal formyltransferase domain. Met-tRNA-FMT transfers a formyl group from N-10 formyltetrahydrofolate to the amino terminal end of a methionyl-aminoacyl-tRNA acyl moiety, yielding formyl-Met-tRNA. Formyl-Met-tRNA plays essential role in protein translation initiation by forming complex with IF2. The formyl group plays a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. The N-terminal domain contains a Rossmann fold and it is the catalytic domain of the enzyme. Length = 204
>gnl|CDD|223301 COG0223, Fmt, Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234567 PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|232983 TIGR00460, fmt, methionyl-tRNA formyltransferase Back     alignment and domain information
>gnl|CDD|144222 pfam00551, Formyl_trans_N, Formyl transferase Back     alignment and domain information
>gnl|CDD|187712 cd08369, FMT_core, Formyltransferase, catalytic core domain Back     alignment and domain information
>gnl|CDD|187713 cd08644, FMT_core_ArnA_N, ArnA, N-terminal formyltransferase domain Back     alignment and domain information
>gnl|CDD|236156 PRK08125, PRK08125, bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated Back     alignment and domain information
>gnl|CDD|215159 PLN02285, PLN02285, methionyl-tRNA formyltransferase Back     alignment and domain information
>gnl|CDD|235902 PRK06988, PRK06988, putative formyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|187725 cd08823, FMT_core_like_5, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|187720 cd08651, FMT_core_like_4, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|187716 cd08647, FMT_core_FDH_N, 10-formyltetrahydrofolate dehydrogenase (FDH), N-terminal hydrolase domain Back     alignment and domain information
>gnl|CDD|187721 cd08653, FMT_core_like_3, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|187714 cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART) Back     alignment and domain information
>gnl|CDD|223376 COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|187722 cd08820, FMT_core_like_6, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|235544 PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|187724 cd08822, FMT_core_like_2, Formyl transferase catalytic core domain found in a group of proteins with unknown functions Back     alignment and domain information
>gnl|CDD|177965 PLN02331, PLN02331, phosphoribosylglycinamide formyltransferase Back     alignment and domain information
>gnl|CDD|187718 cd08649, FMT_core_NRPS_like, N-terminal formyl transferase catalytic core domain of NRPS_like proteins, one of the proteins involved in the synthesis of Oxazolomycin Back     alignment and domain information
>gnl|CDD|236058 PRK07579, PRK07579, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|161973 TIGR00639, PurN, phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent Back     alignment and domain information
>gnl|CDD|187730 cd08702, Arna_FMT_C, C-terminal subdomain of the formyltransferase domain on ArnA, which modifies lipid A with 4-amino-4-deoxy-l-arabinose Back     alignment and domain information
>gnl|CDD|217282 pfam02911, Formyl_trans_C, Formyl transferase, C-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 412
COG0223307 Fmt Methionyl-tRNA formyltransferase [Translation, 100.0
TIGR00460313 fmt methionyl-tRNA formyltransferase. The top-scor 100.0
PLN02285334 methionyl-tRNA formyltransferase 100.0
PRK06988312 putative formyltransferase; Provisional 100.0
PRK00005309 fmt methionyl-tRNA formyltransferase; Reviewed 100.0
PRK08125 660 bifunctional UDP-glucuronic acid decarboxylase/UDP 100.0
PRK07579245 hypothetical protein; Provisional 100.0
KOG3082|consensus338 100.0
TIGR00639190 PurN phosphoribosylglycinamide formyltransferase, 100.0
PRK05647200 purN phosphoribosylglycinamide formyltransferase; 100.0
PLN02331207 phosphoribosylglycinamide formyltransferase 100.0
KOG2452|consensus 881 100.0
PRK06027286 purU formyltetrahydrofolate deformylase; Reviewed 100.0
PF00551181 Formyl_trans_N: Formyl transferase; InterPro: IPR0 100.0
PRK13011286 formyltetrahydrofolate deformylase; Reviewed 100.0
TIGR00655280 PurU formyltetrahydrofolate deformylase. This mode 99.98
PLN02828268 formyltetrahydrofolate deformylase 99.98
PRK13010289 purU formyltetrahydrofolate deformylase; Reviewed 99.98
COG0299200 PurN Folate-dependent phosphoribosylglycinamide fo 99.96
KOG3076|consensus206 99.92
PF02911100 Formyl_trans_C: Formyl transferase, C-terminal dom 99.89
COG0788287 PurU Formyltetrahydrofolate hydrolase [Nucleotide 99.84
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=5e-70  Score=538.83  Aligned_cols=263  Identities=37%  Similarity=0.578  Sum_probs=244.4

Q ss_pred             eeeEEEEecCC---CC-----CchHHHHHHHCCCcEEEcCCC-------ccccccCCcEEEEccCcccCChhHHhcCCCC
Q psy17704          6 ISKLEVVSSKE---GK-----HSPVIQFAQDEKLTLYRWPMD-------PDLIKDNYDIGMVVSFGHLIPSKIINAFPLG   70 (412)
Q Consensus         6 i~~i~VVt~~~---gk-----~spVk~~A~e~GIpV~~~p~~-------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~G   70 (412)
                      .+-+.|||+||   ||     ++||+++|.++||||++ |++       +.+++++||++||++||+|||+++|+.+++|
T Consensus        25 ~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~q-P~~l~~~e~~~~l~~l~~D~ivvvayG~ilp~~iL~~~~~G  103 (307)
T COG0223          25 HEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQ-PEKLNDPEFLEELAALDPDLIVVVAYGQILPKEILDLPPYG  103 (307)
T ss_pred             CceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceec-cccCCcHHHHHHHhccCCCEEEEEehhhhCCHHHHhcCcCC
Confidence            35688999998   33     69999999999999999 653       2367789999999999999999999999999


Q ss_pred             eEEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy17704         71 MINVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVR  150 (412)
Q Consensus        71 ~INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L~  150 (412)
                      |||+||||||+|||++||||||+|||++||||+|+|++ +||+|||++|++++|.++||+++|++||+..|+++|.++|.
T Consensus       104 ~iNvH~SLLPr~RGaAPIq~aI~~Gd~~TGvTim~M~~-~lDaG~Il~q~~~~I~~~dta~~L~~kLa~~ga~lL~~~L~  182 (307)
T COG0223         104 CINLHPSLLPRYRGAAPIQWAILNGDTETGVTIMQMDE-GLDAGDILAQREVPIEPDDTAGSLHDKLAELGAELLLETLP  182 (307)
T ss_pred             eEEecCccCccccCccHHHHHHHcCCcccceEEEEccc-cCCCcceeeeEEeccCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999997 69999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCCCCCCCCCccccCCCccccccccCCCCHHHHHHHHhccCCCCCceEEEcCeEEEEEEEEeccccccccccC
Q psy17704        151 DMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTKLRSDALLR  230 (412)
Q Consensus       151 ~l~~G~~~~~pQd~~~aTYa~Ki~keD~~IDW~~~sA~~I~n~IRA~~p~ppa~t~~~Gk~ikI~~a~~~~~~~~~~~~~  230 (412)
                      .+.+|.+.+++|+++++||++|++++|++|||+ ++|.+|+|+||||+|||+||++++|+++|||++++.+.        
T Consensus       183 ~i~~g~~~~~~Q~e~~~tya~ki~ked~~Idw~-~~a~~i~n~IRa~~P~Pga~~~~~~~~iki~~a~~~~~--------  253 (307)
T COG0223         183 QLEAGTLTPIPQDEEEATYAPKITKEDGRIDWS-KPAAQILNKIRAFNPWPGAWTELGGKRIKIWEARVLEG--------  253 (307)
T ss_pred             HHhcCCCCCCCCCcccCccccCCCHHHcccCCc-cCHHHHHHHHhccCCCCceEEEECCeEEEEEEEEEccc--------
Confidence            999999999999999999999999999999998 79999999999999999999999999999999997653        


Q ss_pred             CCCCCCCCCcccccccccccccCCcccceecceeeeeecccccccccccccCCCCCCCCCCccccchhhhhccccCCCCC
Q psy17704        231 PNTSHVPRDQHSQLTSALSFLSGDTSLAQWHGVKVKLHNISLDTKLRSDTLLRPNTSHVPRDQHSQLTSALSFLSGDTSS  310 (412)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (412)
                         +                                                                            
T Consensus       254 ---~----------------------------------------------------------------------------  254 (307)
T COG0223         254 ---A----------------------------------------------------------------------------  254 (307)
T ss_pred             ---c----------------------------------------------------------------------------
Confidence               0                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEeCCCeEEEEecCCCeEEEeeeecCCCCCCCHHHHHccCC
Q psy17704        311 KPPSETKEPPERSKEPTDRLTEEPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYL  388 (412)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~~~~~~l~v~~~~g~~~~~~~~q~~gkk~~~a~~f~~g~~  388 (412)
                                                  ....||+|....+ +.|.|+|++| .|.+.++|++|||+|++.||+||.+
T Consensus       255 ----------------------------~~~~pG~i~~~~~-~~l~Va~~~g-~l~l~~lQ~~gkk~~~~~~~l~g~~  302 (307)
T COG0223         255 ----------------------------SNGKPGEILAADK-KGLLVACGDG-ALRLTELQPAGKKAMSAADFLNGRR  302 (307)
T ss_pred             ----------------------------ccCCCcceEEecC-CcEEEEeCCc-eEEEEeeccCCCCCCCHHHHhcccc
Confidence                                        0136899986554 6799999998 8999999999999999999999987

>TIGR00460 fmt methionyl-tRNA formyltransferase Back     alignment and domain information
>PLN02285 methionyl-tRNA formyltransferase Back     alignment and domain information
>PRK06988 putative formyltransferase; Provisional Back     alignment and domain information
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed Back     alignment and domain information
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated Back     alignment and domain information
>PRK07579 hypothetical protein; Provisional Back     alignment and domain information
>KOG3082|consensus Back     alignment and domain information
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent Back     alignment and domain information
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed Back     alignment and domain information
>PLN02331 phosphoribosylglycinamide formyltransferase Back     alignment and domain information
>KOG2452|consensus Back     alignment and domain information
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group Back     alignment and domain information
>PRK13011 formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>TIGR00655 PurU formyltetrahydrofolate deformylase Back     alignment and domain information
>PLN02828 formyltetrahydrofolate deformylase Back     alignment and domain information
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG3076|consensus Back     alignment and domain information
>PF02911 Formyl_trans_C: Formyl transferase, C-terminal domain; InterPro: IPR005793 Methionyl-tRNA formyltransferase (2 Back     alignment and domain information
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query412
3tqq_A314 Structure Of The Methionyl-Trna Formyltransferase ( 2e-31
3r8x_A318 Crystal Structure Of Methionyl-Trna Formyltransfera 1e-25
3q0i_A318 Methionyl-Trna Formyltransferase From Vibrio Choler 4e-24
1fmt_A314 Methionyl-Trnafmet Formyltransferase From Escherich 7e-24
4iqf_A317 Crystal Structure Of Methyionyl-trna Formyltransfer 7e-20
1z7e_A 660 Crystal Structure Of Full Length Arna Length = 660 3e-17
2bln_A305 N-Terminal Formyltransferase Domain Of Arna In Comp 5e-17
1yrw_A302 Crystal Structure Of E.Coli Arna Transformylase Dom 6e-17
1s3i_A310 Crystal Structure Of The N Terminal Hydrolase Domai 2e-14
2bw0_A329 Crystal Structure Of The Hydrolase Domain Of Human 4e-14
3tqr_A215 Structure Of The Phosphoribosylglycinamide Formyltr 2e-04
>pdb|3TQQ|A Chain A, Structure Of The Methionyl-Trna Formyltransferase (Fmt) From Coxiella Burnetii Length = 314 Back     alignment and structure 
Iteration: 1

 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 102/156 (65%), Gaps = 2/156 (1%)
Query: 42  LIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAILHGDHETGI 101
           LI  N D+ +VV++G ++P K +NAF LG +NVH S+LPRWRGAAPI  AIL GD ETGI
Sbjct: 76  LIAXNADVXVVVAYGLILPKKALNAFRLGCVNVHASLLPRWRGAAPIQRAILAGDRETGI 135
Query: 102 SIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMPRCVLNAPA 161
           SI +   +  D G+++ +  C IS +DTA +LH++L+L+G  LLLE +  + +  +    
Sbjct: 136 SIXQXN-EGLDTGDVLAKSACVISSEDTAADLHDRLSLIGADLLLESLAKLEKGDIKLEK 194
Query: 162 QPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRAL 197
           Q +  ATYA+KI    ++IDW   S+V++    RA 
Sbjct: 195 QDEASATYASKIQKQEALIDWRK-SAVEIARQVRAF 229
>pdb|3R8X|A Chain A, Crystal Structure Of Methionyl-Trna Formyltransferase From Yersinia Pestis Complexed With L-Methionine Length = 318 Back     alignment and structure
>pdb|3Q0I|A Chain A, Methionyl-Trna Formyltransferase From Vibrio Cholerae Length = 318 Back     alignment and structure
>pdb|1FMT|A Chain A, Methionyl-Trnafmet Formyltransferase From Escherichia Coli Length = 314 Back     alignment and structure
>pdb|4IQF|A Chain A, Crystal Structure Of Methyionyl-trna Formyltransferase From Bacillus Anthracis Length = 317 Back     alignment and structure
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660 Back     alignment and structure
>pdb|2BLN|A Chain A, N-Terminal Formyltransferase Domain Of Arna In Complex With N-5-Formyltetrahydrofolate And Ump Length = 305 Back     alignment and structure
>pdb|1YRW|A Chain A, Crystal Structure Of E.Coli Arna Transformylase Domain Length = 302 Back     alignment and structure
>pdb|1S3I|A Chain A, Crystal Structure Of The N Terminal Hydrolase Domain Of 10- Formyltetrahydrofolate Dehydrogenase Length = 310 Back     alignment and structure
>pdb|2BW0|A Chain A, Crystal Structure Of The Hydrolase Domain Of Human 10- Formyltetrahydrofolate 2 Dehydrogenase Length = 329 Back     alignment and structure
>pdb|3TQR|A Chain A, Structure Of The Phosphoribosylglycinamide Formyltransferase (Purn) In Complex With Ches From Coxiella Burnetii Length = 215 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query412
2bln_A305 Protein YFBG; transferase, formyltransferase, L-AR 2e-56
1fmt_A314 Methionyl-tRNA FMet formyltransferase; initiator t 4e-54
3tqq_A314 Methionyl-tRNA formyltransferase; protein synthesi 9e-54
3rfo_A317 Methionyl-tRNA formyltransferase; structural genom 1e-53
1z7e_A 660 Protein aRNA; rossmann fold, OB-like fold, hydrola 1e-53
3q0i_A318 Methionyl-tRNA formyltransferase; structural genom 2e-53
2bw0_A329 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase 3e-51
1zgh_A260 Methionyl-tRNA formyltransferase; southeast collab 5e-40
3av3_A212 Phosphoribosylglycinamide formyltransferase; struc 4e-11
3da8_A215 Probable 5'-phosphoribosylglycinamide formyltransf 8e-11
3p9x_A211 Phosphoribosylglycinamide formyltransferase; struc 9e-11
3auf_A229 Glycinamide ribonucleotide transformylase 1; struc 9e-11
3tqr_A215 Phosphoribosylglycinamide formyltransferase; purin 3e-10
1jkx_A212 GART;, phosphoribosylglycinamide formyltransferase 3e-10
2ywr_A216 Phosphoribosylglycinamide formyltransferase; rossm 2e-09
4ds3_A209 Phosphoribosylglycinamide formyltransferase; struc 2e-09
3kcq_A215 Phosphoribosylglycinamide formyltransferase; struc 8e-09
1meo_A209 Phosophoribosylglycinamide formyltransferase; puri 9e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A Length = 305 Back     alignment and structure
 Score =  186 bits (476), Expect = 2e-56
 Identities = 56/203 (27%), Positives = 101/203 (49%), Gaps = 9/203 (4%)

Query: 20  SPVIQFAQDEKLTLY-----RWPMDPDLIKD-NYDIGMVVSFGHLIPSKIINAFPLGMIN 73
             V + A +  + +Y       P+  + I   + D+     + HLI  +I+   P G  N
Sbjct: 43  GSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFN 102

Query: 74  VHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGEL 133
           +HGS+LP++RG AP+   +++G+ ETG+++ R+  +  D G IV Q R +I+PDD A  L
Sbjct: 103 LHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKR-ADAGAIVAQLRIAIAPDDIAITL 161

Query: 134 HNKLALVGGQLLLECVRDMPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNL 193
           H+KL     QLL + +  +    +   AQ +  AT   +     S ++W+   +  ++N+
Sbjct: 162 HHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWH-KPASVLHNM 220

Query: 194 HRALGHVYPL-LAQWHGVKVKLH 215
            RA+   +P   +     K  + 
Sbjct: 221 VRAVADPWPGAFSYVGNQKFTVW 243
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A Length = 314 Back     alignment and structure
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii} Length = 314 Back     alignment and structure
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 Back     alignment and structure
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae} Length = 318 Back     alignment and structure
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A Length = 329 Back     alignment and structure
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1 Length = 260 Back     alignment and structure
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus} Length = 212 Back     alignment and structure
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Length = 215 Back     alignment and structure
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans} Length = 211 Back     alignment and structure
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii} Length = 229 Back     alignment and structure
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} Length = 215 Back     alignment and structure
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Length = 212 Back     alignment and structure
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Length = 216 Back     alignment and structure
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV} Length = 209 Back     alignment and structure
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} Length = 215 Back     alignment and structure
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Length = 209 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query412
3tqq_A314 Methionyl-tRNA formyltransferase; protein synthesi 100.0
3rfo_A317 Methionyl-tRNA formyltransferase; structural genom 100.0
3q0i_A318 Methionyl-tRNA formyltransferase; structural genom 100.0
1fmt_A314 Methionyl-tRNA FMet formyltransferase; initiator t 100.0
2bln_A305 Protein YFBG; transferase, formyltransferase, L-AR 100.0
2bw0_A329 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase 100.0
1z7e_A 660 Protein aRNA; rossmann fold, OB-like fold, hydrola 100.0
1zgh_A260 Methionyl-tRNA formyltransferase; southeast collab 100.0
3av3_A212 Phosphoribosylglycinamide formyltransferase; struc 100.0
3p9x_A211 Phosphoribosylglycinamide formyltransferase; struc 100.0
2ywr_A216 Phosphoribosylglycinamide formyltransferase; rossm 100.0
1meo_A209 Phosophoribosylglycinamide formyltransferase; puri 100.0
1jkx_A212 GART;, phosphoribosylglycinamide formyltransferase 100.0
3kcq_A215 Phosphoribosylglycinamide formyltransferase; struc 100.0
4ds3_A209 Phosphoribosylglycinamide formyltransferase; struc 100.0
3tqr_A215 Phosphoribosylglycinamide formyltransferase; purin 100.0
3da8_A215 Probable 5'-phosphoribosylglycinamide formyltransf 100.0
3auf_A229 Glycinamide ribonucleotide transformylase 1; struc 100.0
3n0v_A286 Formyltetrahydrofolate deformylase; formyl transfe 100.0
3lou_A292 Formyltetrahydrofolate deformylase; structural gen 100.0
3o1l_A302 Formyltetrahydrofolate deformylase; structural gen 100.0
3obi_A288 Formyltetrahydrofolate deformylase; structural gen 100.0
3nrb_A287 Formyltetrahydrofolate deformylase; N-terminal ACT 100.0
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii} Back     alignment and structure
Probab=100.00  E-value=8.1e-66  Score=510.30  Aligned_cols=262  Identities=34%  Similarity=0.604  Sum_probs=240.3

Q ss_pred             eeEEEEecCC---CC-----CchHHHHHHHCCCcEEEcCCC-------ccccccCCcEEEEccCcccCChhHHhcCCCCe
Q psy17704          7 SKLEVVSSKE---GK-----HSPVIQFAQDEKLTLYRWPMD-------PDLIKDNYDIGMVVSFGHLIPSKIINAFPLGM   71 (412)
Q Consensus         7 ~~i~VVt~~~---gk-----~spVk~~A~e~GIpV~~~p~~-------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~   71 (412)
                      +-+.|||+|+   ||     ++||+++|+++||||++ +.+       +.++++++|++|+++||+|||+++|+.+++||
T Consensus        27 ~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv~~-~~~~~~~~~~~~l~~~~~Dliv~~~~~~ilp~~il~~~~~g~  105 (314)
T 3tqq_A           27 RVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPIIQ-PFSLRDEVEQEKLIAMNADVMVVVAYGLILPKKALNAFRLGC  105 (314)
T ss_dssp             EEEEEECCCC----------CCHHHHHHHHTTCCEEC-CSCSSSHHHHHHHHTTCCSEEEEESCCSCCCHHHHTSSTTCE
T ss_pred             eEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCEEC-cccCCCHHHHHHHHhcCCCEEEEcCcccccCHHHHhhCcCCE
Confidence            3467889887   32     69999999999999998 442       13678999999999999999999999999999


Q ss_pred             EEEcCCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy17704         72 INVHGSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRD  151 (412)
Q Consensus        72 INiHpSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~kLa~~g~~LL~e~L~~  151 (412)
                      ||+||||||+|||++|++|||++|+++||||+|+|++ ++|+||||+|+.++|.++||+.+|++|++.++++++.++|+.
T Consensus       106 iNiHpSlLP~yRG~~pi~~Ai~~G~~~tGvTih~~~~-~~D~G~Ii~q~~~~I~~~dt~~~L~~rl~~~~~~ll~~~l~~  184 (314)
T 3tqq_A          106 VNVHASLLPRWRGAAPIQRAILAGDRETGISIMQMNE-GLDTGDVLAKSACVISSEDTAADLHDRLSLIGADLLLESLAK  184 (314)
T ss_dssp             EEEESSCTTTTBSSCHHHHHHHHTCSEEEEEEEECCS-SSSCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCccccCCCCccHHHHHHHcCCCeeEEEEEeeec-CCCCCCEEEEEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999997 799999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCccccCCCccccccccCCCCHHHHHHHHhccCCCCCceEEEcCeEEEEEEEEeccccccccccCC
Q psy17704        152 MPRCVLNAPAQPDEGATYANKIDWSYSVIDWNTMSSVQVYNLHRALGHVYPLLAQWHGVKVKLHNISLDTKLRSDALLRP  231 (412)
Q Consensus       152 l~~G~~~~~pQd~~~aTYa~Ki~keD~~IDW~~~sA~~I~n~IRA~~p~ppa~t~~~Gk~ikI~~a~~~~~~~~~~~~~~  231 (412)
                      +.+|.+.++||+++.+||++|++++|++|||+ ++|++|+|+||||+|||+||++++|+++|||+++..+.         
T Consensus       185 l~~g~~~~~~Q~~~~~tya~ki~~~d~~Idw~-~~a~~I~~~iRa~~P~Pga~~~~~g~~~ki~~a~~~~~---------  254 (314)
T 3tqq_A          185 LEKGDIKLEKQDEASATYASKIQKQEALIDWR-KSAVEIARQVRAFNPTPIAFTYFEGQPMRIWRATVVDE---------  254 (314)
T ss_dssp             HHHTCCCCBCCCGGGCCBCCCCCGGGGBCCTT-SBHHHHHHHHHHTTTTTCCEEEETTEEEEEEEEEEECC---------
T ss_pred             HHcCCCCcCcCCCccccCCCCCCHHHheeccc-CCHHHHHHHHhccCCCCceEEEECCEEEEEEEEEEecC---------
Confidence            99999999999999999999999999999998 89999999999999999999999999999999886432         


Q ss_pred             CCCCCCCCcccccccccccccCCcccceecceeeeeecccccccccccccCCCCCCCCCCccccchhhhhccccCCCCCC
Q psy17704        232 NTSHVPRDQHSQLTSALSFLSGDTSLAQWHGVKVKLHNISLDTKLRSDTLLRPNTSHVPRDQHSQLTSALSFLSGDTSSK  311 (412)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (412)
                                                                                                      
T Consensus       255 --------------------------------------------------------------------------------  254 (314)
T 3tqq_A          255 --------------------------------------------------------------------------------  254 (314)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEEeCCCeEEEEecCCCeEEEeeeecCCCCCCCHHHHHccCC
Q psy17704        312 PPSETKEPPERSKEPTDRLTEEPNPIVPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYL  388 (412)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~~~~~~l~v~~~~g~~~~~~~~q~~gkk~~~a~~f~~g~~  388 (412)
                                                .....||+|+... ++.+.|+|+|| .|.|.+||++|||+|+|.||+||++
T Consensus       255 --------------------------~~~~~pG~v~~~~-~~~l~V~~~dg-~l~i~~lq~~gkk~m~~~~f~~g~~  303 (314)
T 3tqq_A          255 --------------------------KTDFEPGVLVDAD-KKGISIAAGSG-ILRLHQLQLPGKRVCSAGDFINAHG  303 (314)
T ss_dssp             --------------------------CCSSCTTCEEEEE-TTEEEEECSBS-EEEEEEEECTTSCCEEHHHHHHHHG
T ss_pred             --------------------------CCCCCCcEEEEec-CCEEEEEECCC-EEEEeEEEcCCCCccCHHHHhccCc
Confidence                                      0023589998654 46899999999 9999999999999999999999997
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae} Back     alignment and structure
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A Back     alignment and structure
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A Back     alignment and structure
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A Back     alignment and structure
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Back     alignment and structure
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1 Back     alignment and structure
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus} Back     alignment and structure
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans} Back     alignment and structure
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} Back     alignment and structure
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Back     alignment and structure
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Back     alignment and structure
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0 Back     alignment and structure
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV} Back     alignment and structure
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0 Back     alignment and structure
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* Back     alignment and structure
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii} Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Back     alignment and structure
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 412
d1fmta2206 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransf 4e-19
d1meoa_205 c.65.1.1 (A:) Glycinamide ribonucleotide transform 2e-12
d1zgha2164 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransf 3e-12
d2bw0a2203 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehyd 8e-12
d1jkxa_209 c.65.1.1 (A:) Glycinamide ribonucleotide transform 2e-11
d2blna2203 c.65.1.1 (A:1-203) Polymyxin resistance protein Ar 6e-09
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 82.7 bits (203), Expect = 4e-19
 Identities = 48/139 (34%), Positives = 81/139 (58%), Gaps = 1/139 (0%)

Query: 34  YRWPMDPDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVHGSILPRWRGAAPIVHAIL 93
                   + +   D+ +VV++G ++P  ++    LG INVHGS+LPRWRGAAPI  ++ 
Sbjct: 69  RPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRGAAPIQRSLW 128

Query: 94  HGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNKLALVGGQLLLECVRDMP 153
            GD ETG++I+++     D G+++ +  C I+ +DT+G L++KLA +G Q L+  ++ + 
Sbjct: 129 AGDAETGVTIMQMDV-GLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGLITTLKQLA 187

Query: 154 RCVLNAPAQPDEGATYANK 172
                   Q +   TYA K
Sbjct: 188 DGTAKPEVQDETLVTYAEK 206
>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]} Length = 205 Back     information, alignment and structure
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]} Length = 164 Back     information, alignment and structure
>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure
>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]} Length = 209 Back     information, alignment and structure
>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 203 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query412
d2bw0a2203 10-formyltetrahydrofolate dehydrogenase domain 1 { 100.0
d2blna2203 Polymyxin resistance protein ArnA, N-terminal doma 100.0
d1fmta2206 Methionyl-tRNAfmet formyltransferase {Escherichia 100.0
d1jkxa_209 Glycinamide ribonucleotide transformylase, GART {E 100.0
d1meoa_205 Glycinamide ribonucleotide transformylase, GART {H 100.0
d1zgha2164 Methionyl-tRNAfmet formyltransferase {Clostridium 99.96
d1fmta1108 Methionyl-tRNAfmet formyltransferase, C-terminal d 99.89
d2bw0a1104 10-formyltetrahydrofolate dehydrogenase domain 2 { 99.85
d2blna1101 Polymyxin resistance protein ArnA, domain 2 {Esche 99.84
d1zgha162 Methionyl-tRNAfmet formyltransferase, C-terminal d 94.03
>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-40  Score=306.03  Aligned_cols=162  Identities=30%  Similarity=0.470  Sum_probs=150.1

Q ss_pred             EEEEecCC--CCCchHHHHHHHCCCcEEEcCCC-----------ccccccCCcEEEEccCcccCChhHHhcCCCCeEEEc
Q psy17704          9 LEVVSSKE--GKHSPVIQFAQDEKLTLYRWPMD-----------PDLIKDNYDIGMVVSFGHLIPSKIINAFPLGMINVH   75 (412)
Q Consensus         9 i~VVt~~~--gk~spVk~~A~e~GIpV~~~p~~-----------~~l~~~~pDliVvv~fg~IIp~~iL~~~~~G~INiH   75 (412)
                      +.|||.++  ++.++++++|+++|||++++...           +.+.+.++|++|+++|++|||+++|+.+++|+||+|
T Consensus        27 ~~V~t~p~~~~~~~~v~~~a~~~~ipv~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ii~~~~l~~~~~g~iN~H  106 (203)
T d2bw0a2          27 VGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAELNVLPFCSQFIPMEIISAPRHGSIIYH  106 (203)
T ss_dssp             EEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHHTTCCSEEEESSCSSCCCHHHHTCSTTCEEEEE
T ss_pred             EEEEcCCCcCcCCChhhhhHHhcCCcccccccccccccccHHHHHHHHHhCCCceEEeecchhhhhhhhhhhhhHhhhhh
Confidence            45888876  56899999999999999985431           125678999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHhCCCeeEEEEEEeCCCCCCCCCeEEEEEEEcCCCCCHHHHHHH-HHHHHHHHHHHHHHhcCC
Q psy17704         76 GSILPRWRGAAPIVHAILHGDHETGISIIRVRPKHFDRGEIVRQYRCSISPDDTAGELHNK-LALVGGQLLLECVRDMPR  154 (412)
Q Consensus        76 pSLLPkYRGaaPI~wAIlnGd~~TGVTIh~md~~giDtGdII~Q~~ipI~~~dT~~sL~~k-La~~g~~LL~e~L~~l~~  154 (412)
                      ||+||+|||++|++|||++|++++|+|+|+|++ ++|+|+|+.|+.++|.+++|..+|++| +..++++++.++|+.+.+
T Consensus       107 ~slLP~yrG~~pi~wai~~g~~~~GvTih~~~~-~~D~G~Ii~q~~~~i~~~dt~~~l~~k~l~~~~~~~~~~~l~~i~~  185 (203)
T d2bw0a2         107 PSLLPRHRGASAINWTLIHGDKKGGFSIFWADD-GLDTGDLLLQKECEVLPDDTVSTLYNRFLFPEGIKGMVQAVRLIAE  185 (203)
T ss_dssp             SSCTTTTBSSCHHHHHHHTTCSEEEEEEEECCS-SSSCSCEEEEEEEECCTTCCHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred             hcccccccccceeeeeecccccccCceeEEecc-ccccchhheeecccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999997 699999999999999999999999998 688999999999999999


Q ss_pred             CCCCCCCCCCCCCcccc
Q psy17704        155 CVLNAPAQPDEGATYAN  171 (412)
Q Consensus       155 G~~~~~pQd~~~aTYa~  171 (412)
                      |+++++||+++++||+.
T Consensus       186 g~~~~~~Q~~~~aTY~g  202 (203)
T d2bw0a2         186 GKAPRLPQPEEGATYEG  202 (203)
T ss_dssp             TCCCCBCCCSTTCCBCC
T ss_pred             CCCCcCCCCCcCCeeCC
Confidence            99999999999999985
>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jkxa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1meoa_ c.65.1.1 (A:) Glycinamide ribonucleotide transformylase, GART {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgha2 c.65.1.1 (A:1-164) Methionyl-tRNAfmet formyltransferase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1fmta1 b.46.1.1 (A:207-314) Methionyl-tRNAfmet formyltransferase, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bw0a1 b.46.1.1 (A:204-307) 10-formyltetrahydrofolate dehydrogenase domain 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2blna1 b.46.1.1 (A:204-304) Polymyxin resistance protein ArnA, domain 2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zgha1 b.46.1.1 (A:165-226) Methionyl-tRNAfmet formyltransferase, C-terminal domain {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure