Psyllid ID: psy17706

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
Protein Sequence
MFEHKGSLQHFRDTSSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKVKNESDKRYKGMSTCPHSLTTPSGIGPCSHDGMTLCQTTDRFHSTNQIRNVYELDPQE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEcccccEEEEEEEEEccccccHHHHHHcHHHcccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEEEEccccEEEEEEEEccccEEEcHHEcccccHHHEccccccccccccccccccccccccccccccccEEEccccccccccccHcEEEccccc
Coil and Loop (DISEMBL)
mfehkgslqhfrdtsskppsetkepperskeptdrlteetnpitpeltpgfvsfdrgskllrvrcvdgksilcSQITVAGKKKMTAVdfkngylgkvknesdkrykgmstcphslttpsgigpcshdgmtlcqttdrfhstnqirnvyeldpqe
Flexible Loop (DISEMBL)
mfehkgslqhfrdtsskppsetkepperskeptdrlteetnpitpeltpgfvsfdrGSKLLRvrcvdgksilcsqitvagkkkmtavdfkngylgkvknesdkryKGMSTCPHSLTTPSGIGPCSHDGMTLCQTTDrfhstnqirnvyeldpqe
Low Complexity Region (SEG)
MFEHKGSLQHFRDtsskppsetkepperskeptDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKVKNESDKRYKGMSTCPHSLTTPSGIGPCSHDGMTLCQTTDRFHSTNQIRNVYELDPQE
Disordered region (IsUnstruct)
************************************************PGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKV****************************HDGMTLCQTTDRFH***************
Disordered Region (DISOPRED)
MFEHKGSLQHFRDTSSKPPSETKEPPERSKE*************PELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKV*************************PCSHDGMTLCQTTDRFHSTNQIRNVYE*****
Disordered Region (DISEMBL)
***************************************TNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKVKNESDKRYKGMSTCPHSLTTPSGIGPCSHDGMTLCQTTDRFHSTNQIRNVYELDPQE
Disordered Region (DISPRO)
***************************************TNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKVKNESDKRYKGMSTCPHSLTTPSGIGPCSHDGMTLCQTTDRFHSTNQIRNVYELD***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFEHKGSLQHFRDTSSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKVKNESDKRYKGMSTCPHSLTTPSGIGPCSHDGMTLCQTTDRFHSTNQIRNVYELDPQE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	154	2.2.26 [Sep-21-2011]
Q9D799	386	Methionyl-tRNA formyltran	yes	N/A	0.292	0.116	0.5	8e-05

>sp|Q9D799|FMT_MOUSE Methionyl-tRNA formyltransferase, mitochondrial OS=Mus musculus GN=Mtfmt PE=2 SV=3

 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 47  LTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYL 94
           +TPGFV + R S++L VRC DG        +V  KK +TA DF NGYL
Sbjct: 301 VTPGFVVYHRPSQMLLVRCKDG---WIGVRSVMLKKTLTATDFYNGYL 345

Formylates methionyl-tRNA in mitochondria. A single tRNA(Met) gene gives rise to both an initiator and an elongator species via an unknown mechanism.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 1EC: .EC: 2EC: .EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
347963744	342	AGAP000398-PA [Anopheles gambiae str. PE	0.435	0.195	0.397	6e-06
170034933	323	methionyl-tRNA formyltransferase [Culex	0.344	0.164	0.452	3e-05
157109317	347	methionyl-tRNA formyltransferase [Aedes	0.409	0.181	0.363	7e-05
195388632	345	GJ23627 [Drosophila virilis] gi|19415106	0.681	0.304	0.279	0.0004

>gi|347963744|ref|XP_310702.5| AGAP000398-PA [Anopheles gambiae str. PEST] gi|333467055|gb|EAA06675.6| AGAP000398-PA [Anopheles gambiae str. PEST]

 Score = 55.8 bits (133), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 39  ETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKVK 98
           ++ P  P   PG + + + S+ L VRC DG+++   Q++V GKK ++  DF NG+L KV 
Sbjct: 276 QSVPAVPADRPGQLEYSKRSRQLLVRCGDGRALELLQLSVGGKKTLSGQDFYNGFLSKV- 334

Query: 99  NESDKRYK 106
           N SD+ +K
Sbjct: 335 NRSDRYFK 342

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170034933|ref|XP_001845326.1| methionyl-tRNA formyltransferase [Culex quinquefasciatus] gi|167876784|gb|EDS40167.1| methionyl-tRNA formyltransferase [Culex quinquefasciatus]

 Score = 53.5 bits (127), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 35/53 (66%)

Query: 46  ELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKVK 98
           +  PG + F R SK LRVRC DGK +   Q+++ GKK M+  +F NG+L K++
Sbjct: 263 DFVPGEIRFCRKSKRLRVRCGDGKMVCVEQLSIGGKKVMSGQEFYNGFLSKLE 315

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157109317|ref|XP_001650620.1| methionyl-tRNA formyltransferase [Aedes aegypti] gi|108879077|gb|EAT43302.1| AAEL005279-PA [Aedes aegypti]

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 3/66 (4%)

Query: 35  RLTEETNPITPELTP---GFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKN 91
           ++ + + P+T +  P   G + + R +K LRV C DG ++L  Q+++ GKK M A +F N
Sbjct: 274 KIFKLSYPVTEQEAPLEIGHIQYCRRTKWLRVGCRDGSAVLIEQLSIGGKKVMNAQEFNN 333

Query: 92  GYLGKV 97
           G+L K+
Sbjct: 334 GFLSKL 339

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195388632|ref|XP_002052983.1| GJ23627 [Drosophila virilis] gi|194151069|gb|EDW66503.1| GJ23627 [Drosophila virilis]

 Score = 49.7 bits (117), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 6/111 (5%)

Query: 1   MFEHKGSLQHFRDTSSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKL 60
           +F    +L  F++ ++     T    E  K+P  +L+   NP      PG++ ++R  K 
Sbjct: 241 LFARHRALYGFKNLTTTLQDRTVYLLEL-KQPELQLSASPNP-----APGYIYYNRVRKS 294

Query: 61  LRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKVKNESDKRYKGMSTC 111
           L V C  G  +   Q+ + GKK M+A DF NG+L + ++    + K +  C
Sbjct: 295 LIVGCARGTQLEVLQLRIEGKKPMSAHDFNNGFLKRAQSVQFTQNKQVVFC 345

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
MGI|MGI:1916856	386	Mtfmt "mitochondrial methionyl	0.292	0.116	0.520	0.00011
FB|FBgn0039836	342	CG1750 [Drosophila melanogaste	0.415	0.187	0.343	0.00049

MGI|MGI:1916856 Mtfmt "mitochondrial methionyl-tRNA formyltransferase" [Mus musculus (taxid:10090)]

 Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
 Identities = 25/48 (52%), Positives = 31/48 (64%)

Query:    47 LTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYL 94
             +TPGFV + R S++L VRC DG   + S   V  KK +TA DF NGYL
Sbjct:   301 VTPGFVVYHRPSQMLLVRCKDGWIGVRS---VMLKKTLTATDFYNGYL 345

GO:0004479 "methionyl-tRNA formyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006412 "translation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016742 "hydroxymethyl-, formyl- and related transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0071951 "conversion of methionyl-tRNA to N-formyl-methionyl-tRNA" evidence=IEA

FB|FBgn0039836 CG1750 [Drosophila melanogaster (taxid:7227)]

 Score = 97 (39.2 bits), Expect = 0.00049, P = 0.00049
 Identities = 23/67 (34%), Positives = 37/67 (55%)

Query:    35 RLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYL 94
             RL E+  P+     PG +S+ R S+ L + C     +   Q+ V G+K M+A DF NG+L
Sbjct:   270 RLPEKRVPVQE---PGAISYLRKSRSLIIGCAQQSQLEVLQLRVEGRKPMSAQDFNNGFL 326

Query:    95 GKVKNES 101
              + ++ S
Sbjct:   327 KQARSLS 333


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      154       134   0.00091  102 3  11 22  0.43    31
                                                     30  0.44    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  555 (59 KB)
  Total size of DFA:  133 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.90u 0.11s 14.01t   Elapsed:  00:00:00
  Total cpu time:  13.90u 0.11s 14.01t   Elapsed:  00:00:00
  Start:  Thu Aug 15 16:40:48 2013   End:  Thu Aug 15 16:40:48 2013

GO:0004479 "methionyl-tRNA formyltransferase activity" evidence=ISS

GO:0009058 "biosynthetic process" evidence=IEA

GO:0071951 "conversion of methionyl-tRNA to N-formyl-methionyl-tRNA" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	154
pfam02911	100	pfam02911, Formyl_trans_C, Formyl transferase, C-t	1e-04

>gnl|CDD|217282 pfam02911, Formyl_trans_C, Formyl transferase, C-terminal domain

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 4/46 (8%)

Query: 49 PG-FVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGY 93
          PG  VS D+G   L V C DG ++L  ++   GKK M A DF NG 
Sbjct: 57 PGTIVSVDKGG--LLVACGDG-ALLILELQPEGKKAMDAADFLNGA 99

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	154
PF02911	100	Formyl_trans_C: Formyl transferase, C-terminal dom	99.9
COG0223	307	Fmt Methionyl-tRNA formyltransferase [Translation,	99.84
TIGR00460	313	fmt methionyl-tRNA formyltransferase. The top-scor	99.81
PRK00005	309	fmt methionyl-tRNA formyltransferase; Reviewed	99.77
PLN02285	334	methionyl-tRNA formyltransferase	99.73
PRK06988	312	putative formyltransferase; Provisional	99.72
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	99.71
KOG3082|consensus	338		97.76
KOG2452|consensus	881		96.77

>PF02911 Formyl_trans_C: Formyl transferase, C-terminal domain; InterPro: IPR005793 Methionyl-tRNA formyltransferase (2

Probab=99.90  E-value=2.9e-24  Score=152.43  Aligned_cols=82  Identities=28%  Similarity=0.360  Sum_probs=69.5

Q ss_pred             cceeeccCCCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCHH
Q psy17706          8 LQHFRDTSSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAV   87 (154)
Q Consensus         8 ~~~IRgl~PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA~   87 (154)
                      +++||||+||||||+.++|+++||+++++.+..   .....||+|++.. +++|.|+|+|| +|.|.+||++|||+|+|.
T Consensus        19 ~~~vRal~p~pga~~~~~~~~i~i~~~~~~~~~---~~~~~pG~i~~~~-~~~l~V~~~dg-~l~i~~~q~~gkk~~~a~   93 (100)
T PF02911_consen   19 YNLVRALNPYPGAFTTFNGKRIKILKAEPLEDD---SSSNPPGTIVYID-KNGLLVACGDG-ALRIRELQPEGKKPMSAK   93 (100)
T ss_dssp             HHHHHHTTTTT-EEEEETTEEEEEEEEEEEETT---SSSSSTTBEEEEE-TTEEEEETSBS-EEEEEEEEETTS-EEEHH
T ss_pred             HHHHhCCCCCCCEEEeeCCeEEEEEeeeecccc---cccccCceEEEEc-CCEEEEEECCc-EEEEEEEEcCCCCEEeHH
Confidence            689999999999999999999999999988543   1222399998665 46999999999 999999999999999999


Q ss_pred             HHHcccC
Q psy17706         88 DFKNGYL   94 (154)
Q Consensus        88 DFLNG~~   94 (154)
                      ||+||++
T Consensus        94 ~f~~g~r  100 (100)
T PF02911_consen   94 DFLNGYR  100 (100)
T ss_dssp             HHHHHH-
T ss_pred             HHHccCC
Confidence            9999975

1.2.9 from EC) transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. This family also includes formyltetrahydrofolate dehydrogenases, which produce formate from formyl-tetrahydrofolate. These enzymes contain an N-terminal domain in common with other formyl transferase enzymes (IPR002376 from INTERPRO). The C-terminal domain has an open beta-barrel fold [].; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3RFO_D 1Z7E_C 2BLN_A 1YRW_A 1FMT_A 2FMT_B 3Q0I_A 3R8X_A 3TQQ_A 2BW0_A ....

>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=4.1e-21  Score=165.88  Aligned_cols=83  Identities=31%  Similarity=0.325  Sum_probs=74.4

Q ss_pred             ccceeeccCCCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCH
Q psy17706          7 SLQHFRDTSSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTA   86 (154)
Q Consensus         7 ~~~~IRgl~PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA   86 (154)
                      -+|+||||+||||||+.++||++|||.+++.++.    ....||+|+... ++++.|+|++| .|.|.++|++|||+|++
T Consensus       221 i~n~IRa~~P~Pga~~~~~~~~iki~~a~~~~~~----~~~~pG~i~~~~-~~~l~Va~~~g-~l~l~~lQ~~gkk~~~~  294 (307)
T COG0223         221 ILNKIRAFNPWPGAWTELGGKRIKIWEARVLEGA----SNGKPGEILAAD-KKGLLVACGDG-ALRLTELQPAGKKAMSA  294 (307)
T ss_pred             HHHHHhccCCCCceEEEECCeEEEEEEEEEcccc----ccCCCcceEEec-CCcEEEEeCCc-eEEEEeeccCCCCCCCH
Confidence            3789999999999999999999999999998643    226899998554 57999999999 99999999999999999


Q ss_pred             HHHHcccCC
Q psy17706         87 VDFKNGYLG   95 (154)
Q Consensus        87 ~DFLNG~~~   95 (154)
                      .||+||...
T Consensus       295 ~~~l~g~~~  303 (307)
T COG0223         295 ADFLNGRRL  303 (307)
T ss_pred             HHHhccccc
Confidence            999999874

>TIGR00460 fmt methionyl-tRNA formyltransferase

Probab=99.81  E-value=1.2e-19  Score=154.72  Aligned_cols=86  Identities=26%  Similarity=0.297  Sum_probs=74.1

Q ss_pred             cceeeccCCCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeC-CCcEEEEceeecCCCCcCCH
Q psy17706          8 LQHFRDTSSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCV-DGKSILCSQITVAGKKKMTA   86 (154)
Q Consensus         8 ~~~IRgl~PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~Vacg-DG~~L~I~eVQ~eGKK~MsA   86 (154)
                      +++||||+||||||+.++|+++|||++++.+..   .....||+|+... +++++|+|+ || +|.|.+||++|||+|++
T Consensus       221 ~~~iRA~~p~pga~~~~~g~~i~i~~a~~~~~~---~~~~~pG~v~~~~-~~~~~V~~~~dg-~l~i~~lq~~Gkk~~~a  295 (313)
T TIGR00460       221 LNKIRALNPWPTAWLTFEGKNIKIHKAKVIDLS---TYKAKPGEIVYHN-KKGILVACGKDG-ILLLLSLQPPGKKVMRA  295 (313)
T ss_pred             HHHHhccCCCCceEEEECCEEEEEEEEEEccCC---CCCCCCCEEEEeC-CCeEEEEEcCCC-EEEEEEEeCCCCCcCcH
Confidence            689999999999999999999999999876422   1123799998654 458999999 88 99999999999999999


Q ss_pred             HHHHcccCCCCc
Q psy17706         87 VDFKNGYLGKVK   98 (154)
Q Consensus        87 ~DFLNG~~~~~~   98 (154)
                      .||+||+++.+.
T Consensus       296 ~~f~~g~~~~~~  307 (313)
T TIGR00460       296 EDFYNGSRHPWY  307 (313)
T ss_pred             HHHHcCCCCccc
Confidence            999999987655

The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.

>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed

Probab=99.77  E-value=1.2e-18  Score=147.83  Aligned_cols=82  Identities=27%  Similarity=0.258  Sum_probs=71.7

Q ss_pred             cceeeccCCCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCHH
Q psy17706          8 LQHFRDTSSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAV   87 (154)
Q Consensus         8 ~~~IRgl~PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA~   87 (154)
                      +++|||++||||||+.++|+++|||++++.+..    ....||+|+... ++++.|+|+|| .|.|.+||++|||+|++.
T Consensus       221 ~~~iRA~~p~pga~~~~~g~~v~i~~a~~~~~~----~~~~pG~i~~~~-~~~~~V~~~dg-~l~i~~l~~~g~k~~~~~  294 (309)
T PRK00005        221 ENHIRGFNPWPGAWTELDGQRLKILEAELVEAS----GSGAPGTILAID-KDGIVVATGEG-ALRLTQLQPPGKKPMSAA  294 (309)
T ss_pred             HHHHhcCCCCCceEEEECCEEEEEEEEEEccCC----CCCCCCEEEEec-CCeEEEEECCe-eEEEEEEECCCCCcccHH
Confidence            589999999999999999999999999876421    234699998544 46899999999 999999999999999999


Q ss_pred             HHHcccCC
Q psy17706         88 DFKNGYLG   95 (154)
Q Consensus        88 DFLNG~~~   95 (154)
                      +|+||++.
T Consensus       295 ~f~~g~~~  302 (309)
T PRK00005        295 DFLNGRRL  302 (309)
T ss_pred             HHhcCCCC
Confidence            99999754

>PLN02285 methionyl-tRNA formyltransferase

Probab=99.73  E-value=8.5e-18  Score=145.26  Aligned_cols=85  Identities=28%  Similarity=0.307  Sum_probs=68.4

Q ss_pred             cceeeccCCCCceeeeeC------Cc----eeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceee
Q psy17706          8 LQHFRDTSSKPPSETKEP------PE----RSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQIT   77 (154)
Q Consensus         8 ~~~IRgl~PwPga~t~l~------Gk----rlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ   77 (154)
                      +++|||++||||||+.++      |+    ++|||++++.+..  ......||++.+ . ++++.|+|+||.+|.|.+||
T Consensus       238 ~~~iRa~~p~Pga~~~~~~~~~~~~~~~~~~iki~~~~~~~~~--~~~~~~~g~~~~-~-~~~l~V~c~dg~~l~i~~lq  313 (334)
T PLN02285        238 HNKVRAFAGWPGTRAKFQLVDDGDGEREVLELKIITTRVCEAG--GEQTGSADAVTF-K-KDSLLVPCGGGTWLEVLEVQ  313 (334)
T ss_pred             HHHHhcCCCCCcEEEEEccccccCCcccceeEEEEEEEEeccc--cccCCCCcEEEE-e-CCeEEEEeCCCCEEEEEEEE
Confidence            689999999999999995      53    9999999876421  001235787643 3 46899999999459999999


Q ss_pred             cCCCCcCCHHHHHcccCCC
Q psy17706         78 VAGKKKMTAVDFKNGYLGK   96 (154)
Q Consensus        78 ~eGKK~MsA~DFLNG~~~~   96 (154)
                      ++|||+|++.||+||++.+
T Consensus       314 ~~Gkk~m~~~~f~~G~~~~  332 (334)
T PLN02285        314 PPGKKVMKAKDFWNGLRGQ  332 (334)
T ss_pred             CCCCCCCcHHHHhcCCCCC
Confidence            9999999999999998764

>PRK06988 putative formyltransferase; Provisional

Probab=99.72  E-value=2e-17  Score=141.29  Aligned_cols=85  Identities=19%  Similarity=0.205  Sum_probs=69.9

Q ss_pred             cceeeccC-CCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCc---EEEEceeecCCCCc
Q psy17706          8 LQHFRDTS-SKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGK---SILCSQITVAGKKK   83 (154)
Q Consensus         8 ~~~IRgl~-PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~---~L~I~eVQ~eGKK~   83 (154)
                      +++||||+ ||||||+.++|+++|||++++............||+|+ .  ++++.|+|+||.   .+.|.++|++|||+
T Consensus       220 ~~~iRA~~~p~pga~~~~~g~~v~i~~a~~~~~~~~~~~~~~pG~i~-~--~~~l~V~c~dg~~v~~l~i~~~q~~gkk~  296 (312)
T PRK06988        220 YNLIRAVAPPYPGAFTDLGGTRFVVARARLAAPGAAAARDLPPGLHV-S--DNALFGVCGDGRAVSILELRRQQDGGETV  296 (312)
T ss_pred             HHHhccCCCCCCeeEEEECCEEEEEEEEEEccCCcccccCCCCCEEE-E--CCCEEEECCCCCCcceEEEEEEEcCCCCc
Confidence            68999996 99999999999999999998764220001124699986 3  468999999994   58999999999999


Q ss_pred             CCHHHHHcccCC
Q psy17706         84 MTAVDFKNGYLG   95 (154)
Q Consensus        84 MsA~DFLNG~~~   95 (154)
                      |+++||+||+..
T Consensus       297 ~~~~~f~~~~~~  308 (312)
T PRK06988        297 VTPAQFAQFIHS  308 (312)
T ss_pred             CCHHHHhhhccc
Confidence            999999999765

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=99.71  E-value=2.2e-17  Score=151.25  Aligned_cols=81  Identities=14%  Similarity=0.092  Sum_probs=70.5

Q ss_pred             cceeeccC-CCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCH
Q psy17706          8 LQHFRDTS-SKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTA   86 (154)
Q Consensus         8 ~~~IRgl~-PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA   86 (154)
                      +++||||+ ||||||+.++|+++|||++++.+..    ....||+|+.. +  .+.|+|+|| +|.|.+||++|||+|++
T Consensus       218 ~~~iRa~~~p~pga~~~~~g~~~~i~~a~~~~~~----~~~~pG~i~~~-~--~~~v~~~dg-~l~i~~~q~~g~~~~~~  289 (660)
T PRK08125        218 HNLVRAVTDPWPGAFSYVGEQKFTVWSSRVLPDA----SGAQPGTVLSV-A--PLRIACGEG-ALEIVTGQAGDGLYMQG  289 (660)
T ss_pred             HHHHhhcCCCCCceEEEECCEEEEEEEEEEccCC----CCCCCCEEEEe-C--CEEEEeCCc-EEEEEEEECCCCCccCH
Confidence            68999998 9999999999999999999886422    23479999843 2  499999999 99999999999999999


Q ss_pred             HHHHcccCCC
Q psy17706         87 VDFKNGYLGK   96 (154)
Q Consensus        87 ~DFLNG~~~~   96 (154)
                      ++|+||+...
T Consensus       290 ~~~~~g~~~~  299 (660)
T PRK08125        290 SQLAQELGLV  299 (660)
T ss_pred             HHHhcCCCCC
Confidence            9999998753

>KOG3082|consensus

Probab=97.76  E-value=1.7e-05  Score=69.86  Aligned_cols=57  Identities=23%  Similarity=0.284  Sum_probs=50.4

Q ss_pred             CCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCHHHHHcccCCCCcccccc
Q psy17706         47 LTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGYLGKVKNESDK  103 (154)
Q Consensus        47 ~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA~DFLNG~~~~~~~~~~~  103 (154)
                      ..+|++.|+.++..+.+.|++|+++.+.+++++|||.|.+.+|.||+...|.+..+.
T Consensus       272 s~~~~~~~h~kk~~l~~~ckngs~l~vl~~~l~~kk~i~a~~f~ng~~~~w~Q~~~~  328 (338)
T KOG3082|consen  272 STSGEDWYHMKKGSLILLCKNGSLLGVLDVVLVGKKGIRASAFNNGLLVEWGQKFSS  328 (338)
T ss_pred             cCcccceeeeccceEEEEecCCCceeeEEEEeccccceeeecccccccchhhhhhcc
Confidence            458999999988889999999889999999999999999999999999966655443

>KOG2452|consensus

Probab=96.77  E-value=0.0016  Score=61.31  Aligned_cols=87  Identities=22%  Similarity=0.215  Sum_probs=67.7

Q ss_pred             ccceeeccCCCCceeeeeCCceeeeeeeEecCc------C-CCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecC
Q psy17706          7 SLQHFRDTSSKPPSETKEPPERSKEPTDRLTEE------T-NPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVA   79 (154)
Q Consensus         7 ~~~~IRgl~PwPga~t~l~GkrlKI~~~~l~~~------~-~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~e   79 (154)
                      -|+.|||-.--||||+.++|+++-++...+...      + .++.....||.+  .  +.+|+.--.||+|+.+..||++
T Consensus       220 ~hn~irgndkvpgaw~~~~~~k~sff~s~l~~~g~~~~~da~~i~~~~~pg~v--~--~~gl~l~g~d~~~~~v~~i~~~  295 (881)
T KOG2452|consen  220 IHNWIRGNDKVPGAWTEACEQKLTFFNSTLNTSGLVPEGDALPIPGAHRPGVV--T--KAGLILFGNDDKMLLVKNIQLE  295 (881)
T ss_pred             HHHHhhcCCCCCcHHHHhhcceeeeeccccCCCCCCCCCCcccccccCCCcee--e--ccceEEEcCCCcEEEEEeEEec
Confidence            478999999999999999999998777655321      1 234445568943  2  3567777778889999999999


Q ss_pred             CCCcCCHHHHHcccCCCC
Q psy17706         80 GKKKMTAVDFKNGYLGKV   97 (154)
Q Consensus        80 GKK~MsA~DFLNG~~~~~   97 (154)
                      ..|.+.|..|..|...+.
T Consensus       296 d~k~i~as~~~~ga~~~~  313 (881)
T KOG2452|consen  296 DGKMILASNFFKGAASSV  313 (881)
T ss_pred             CCcEEehhhhccccceeE
Confidence            999999999999986544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	154
3rfo_A	317	Methionyl-tRNA formyltransferase; structural genom	99.85
3q0i_A	318	Methionyl-tRNA formyltransferase; structural genom	99.84
3tqq_A	314	Methionyl-tRNA formyltransferase; protein synthesi	99.84
1fmt_A	314	Methionyl-tRNA FMet formyltransferase; initiator t	99.84
2bln_A	305	Protein YFBG; transferase, formyltransferase, L-AR	99.79
2bw0_A	329	10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase	99.74
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	99.7
1zgh_A	260	Methionyl-tRNA formyltransferase; southeast collab	97.96

>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}

Probab=99.84  E-value=8.7e-22  Score=167.62  Aligned_cols=81  Identities=17%  Similarity=0.162  Sum_probs=73.1

Q ss_pred             cceeeccCCCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCHH
Q psy17706          8 LQHFRDTSSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAV   87 (154)
Q Consensus         8 ~~~IRgl~PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA~   87 (154)
                      +++||||+||||||+.++|+++|||++++.+..    ....||+|+... ++++.|+|+|| +|.|.+||++|||+|+++
T Consensus       228 ~~~iRa~~P~Pga~~~~~g~~~ki~~a~~~~~~----~~~~pG~i~~~~-~~~~~V~~~dg-~l~i~~lq~~gkk~m~a~  301 (318)
T 3q0i_A          228 ERCIRAFNPWPMSHFEVAENSIKVWQARVETRA----VTQTPGTIIQAD-KSGIYVATGQD-VLVLESLQIPGKKALPVQ  301 (318)
T ss_dssp             HHHHHHTTTTTCCEEEETTEEEEEEEEEEECCC----CCSCTTBEEEEE-TTEEEEECSBS-EEEEEEEECTTSCCEEHH
T ss_pred             HHHHhccCCCCceEEEECCEEEEEEEEEEecCC----CCCCCcEEEEEc-CCEEEEEECCc-EEEEEEEEcCCCCcccHH
Confidence            689999999999999999999999999987533    346799998554 57899999999 999999999999999999


Q ss_pred             HHHcccC
Q psy17706         88 DFKNGYL   94 (154)
Q Consensus        88 DFLNG~~   94 (154)
                      ||+||+.
T Consensus       302 ~f~~g~~  308 (318)
T 3q0i_A          302 DILNARA  308 (318)
T ss_dssp             HHHHHHT
T ss_pred             HHhccCc
Confidence            9999987

>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}

Probab=99.84  E-value=9.8e-22  Score=166.87  Aligned_cols=81  Identities=19%  Similarity=0.204  Sum_probs=73.0

Q ss_pred             cceeeccCCCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCHH
Q psy17706          8 LQHFRDTSSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAV   87 (154)
Q Consensus         8 ~~~IRgl~PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA~   87 (154)
                      +++||||+||||||+.++|+++|||++++.+..    ....||+|+... ++++.|+|+|| +|.|.+||++|||+|+++
T Consensus       223 ~~~iRa~~P~Pga~~~~~g~~~ki~~a~~~~~~----~~~~pG~v~~~~-~~~l~V~~~dg-~l~i~~lq~~gkk~m~~~  296 (314)
T 3tqq_A          223 ARQVRAFNPTPIAFTYFEGQPMRIWRATVVDEK----TDFEPGVLVDAD-KKGISIAAGSG-ILRLHQLQLPGKRVCSAG  296 (314)
T ss_dssp             HHHHHHTTTTTCCEEEETTEEEEEEEEEEECCC----CSSCTTCEEEEE-TTEEEEECSBS-EEEEEEEECTTSCCEEHH
T ss_pred             HHHHhccCCCCceEEEECCEEEEEEEEEEecCC----CCCCCcEEEEec-CCEEEEEECCC-EEEEeEEEcCCCCccCHH
Confidence            689999999999999999999999999987532    346799998554 57999999999 999999999999999999


Q ss_pred             HHHcccC
Q psy17706         88 DFKNGYL   94 (154)
Q Consensus        88 DFLNG~~   94 (154)
                      ||+||+.
T Consensus       297 ~f~~g~~  303 (314)
T 3tqq_A          297 DFINAHG  303 (314)
T ss_dssp             HHHHHHG
T ss_pred             HHhccCc
Confidence            9999986

>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A

Probab=99.84  E-value=2e-21  Score=164.71  Aligned_cols=81  Identities=21%  Similarity=0.167  Sum_probs=72.0

Q ss_pred             cceeeccCCCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCHH
Q psy17706          8 LQHFRDTSSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAV   87 (154)
Q Consensus         8 ~~~IRgl~PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA~   87 (154)
                      +++||||+|||||||.++|+++|||++++.+..    ....||+|+... ++++.|+|+|| +|.|.+||++|||+|++.
T Consensus       224 ~~~iRa~~p~Pga~~~~~g~~~ki~~a~~~~~~----~~~~pG~i~~~~-~~~~~V~~~dg-~l~i~~~q~~gkk~m~a~  297 (314)
T 1fmt_A          224 ERCIRAFNPWPMSWLEIEGQPVKVWKASVIDTA----TNAAPGTILEAN-KQGIQVATGDG-ILNLLSLQPAGKKAMSAQ  297 (314)
T ss_dssp             HHHHHHTTTTTCEEEEETTEEEEEEEEEEECCC----CCSCTTBEEEEE-TTEEEEECSBS-EEEEEEEEETTSCCEEHH
T ss_pred             HHHHhccCCCCceEEEECCEEEEEEEEEEccCC----CCCCCceEEEec-CCEEEEEeCCC-EEEEEEEEcCCCCCCCHH
Confidence            689999999999999999999999999887422    234799998544 57899999999 999999999999999999


Q ss_pred             HHHcccC
Q psy17706         88 DFKNGYL   94 (154)
Q Consensus        88 DFLNG~~   94 (154)
                      ||+||+.
T Consensus       298 ~~~~g~~  304 (314)
T 1fmt_A          298 DLLNSRR  304 (314)
T ss_dssp             HHHHHSG
T ss_pred             HHhccCC
Confidence            9999986

>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A

Probab=99.79  E-value=6.2e-20  Score=154.89  Aligned_cols=80  Identities=14%  Similarity=0.089  Sum_probs=69.9

Q ss_pred             cceeecc-CCCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCH
Q psy17706          8 LQHFRDT-SSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTA   86 (154)
Q Consensus         8 ~~~IRgl-~PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA   86 (154)
                      +++|||| +||||||+.++|+++|||++++.+..    ....||+|+. .+  ++.|+|+|| +|.|.+||++|||+|++
T Consensus       218 ~~~iRa~~~p~Pga~~~~~g~~~ki~~a~~~~~~----~~~~pG~i~~-~~--~~~V~~~dg-~l~i~~~q~~gkk~m~~  289 (305)
T 2bln_A          218 HNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHA----SKAQPGSVIS-VA--PLLIACGDG-ALEIVTGQAGDGITMQG  289 (305)
T ss_dssp             HHHHHHTCTTSCCEEEEETTEEEEEEEEEEECSC----CCSCTTBEEE-ET--TEEEECSBS-EEEEEEEEETTSCCEEH
T ss_pred             HHHHhccCCCCCceEEEECCEEEEEEEEEEccCC----CCCCCCEEEE-EC--CEEEEeCCc-eEEEEEEecCCCceecH
Confidence            6899999 59999999999999999999887432    2357999974 32  499999999 99999999999999999


Q ss_pred             HHHHcccCC
Q psy17706         87 VDFKNGYLG   95 (154)
Q Consensus        87 ~DFLNG~~~   95 (154)
                      .||+||+..
T Consensus       290 ~~~~~g~~~  298 (305)
T 2bln_A          290 SQLAQTLGL  298 (305)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHhcCCC
Confidence            999999864

>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A

Probab=99.74  E-value=1.3e-18  Score=148.25  Aligned_cols=80  Identities=21%  Similarity=0.213  Sum_probs=66.4

Q ss_pred             cceeeccCCCCceeeeeCCceeeeeeeEecCcCC-C------CCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCC
Q psy17706          8 LQHFRDTSSKPPSETKEPPERSKEPTDRLTEETN-P------ITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAG   80 (154)
Q Consensus         8 ~~~IRgl~PwPga~t~l~GkrlKI~~~~l~~~~~-~------~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eG   80 (154)
                      +++||||+||||||+.++|+++|||++++.+... +      ......||+|.    +++++|+|+||.+|.|.+||++|
T Consensus       243 ~~~iRa~~p~Pga~t~~~g~~~ki~~a~~~~~~~~~~g~~~~~~~~~~pG~i~----~~~~~V~~~dg~~l~i~~lq~~g  318 (329)
T 2bw0_A          243 HNWIRGNDKVPGAWTEACEQKLTFFNSTLNTSGLVPEGDALPIPGAHRPGVVT----KAGLILFGNDDKMLLVKNIQLED  318 (329)
T ss_dssp             HHHHHTTTTTTCCEEEETTEEEEEEEEESCCTTCCCCSEEECCTTCSSCEEEE----TTEEEEECTTSCEEEEEEEECTT
T ss_pred             HHHHhccCCCCceEEEECCEEEEEEEEEEecccccccccccccccCCCCeEEE----CCeEEEEeCCCCEEEEeEEECCC
Confidence            6899999999999999999999999998764320 0      00124699982    47899999999449999999999


Q ss_pred             CCcCCHHHHHc
Q psy17706         81 KKKMTAVDFKN   91 (154)
Q Consensus        81 KK~MsA~DFLN   91 (154)
                      ||+|+++||+|
T Consensus       319 kk~m~a~~~~~  329 (329)
T 2bw0_A          319 GKMILASNFFK  329 (329)
T ss_dssp             SCEEEGGGTTC
T ss_pred             CCcCCHHHHhC
Confidence            99999999986

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=99.70  E-value=1.1e-17  Score=149.45  Aligned_cols=80  Identities=14%  Similarity=0.089  Sum_probs=69.7

Q ss_pred             cceeecc-CCCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCH
Q psy17706          8 LQHFRDT-SSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTA   86 (154)
Q Consensus         8 ~~~IRgl-~PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA   86 (154)
                      +++|||| +||||||+.++|+++|||++++.++.    ....||+|+. .+  .+.|+|+|| +|.|.+||++|||.|++
T Consensus       218 ~~~ira~~~p~p~a~~~~~~~~~~i~~~~~~~~~----~~~~pG~i~~-~~--~~~v~~~~g-~~~i~~~q~~g~~~m~a  289 (660)
T 1z7e_A          218 HNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHA----SKAQPGSVIS-VA--PLLIACGDG-ALEIVTGQAGDGITMQG  289 (660)
T ss_dssp             HHHHHHTCTTSCCEEEEETTEEEEEEECCEECCC----CSSCTTSEEE-ET--TEEEECSBS-EEEECEEEETTSCCEEH
T ss_pred             HHHHhccCCCCCceEEEECCEEEEEEEEEEcccc----CCCCCcEEEe-cC--cEEEEeCCC-eEEEEEeccCCCCcccH
Confidence            6899999 59999999999999999999887432    2357999984 32  399999999 99999999999999999


Q ss_pred             HHHHcccCC
Q psy17706         87 VDFKNGYLG   95 (154)
Q Consensus        87 ~DFLNG~~~   95 (154)
                      .||+||+..
T Consensus       290 ~d~l~g~~l  298 (660)
T 1z7e_A          290 SQLAQTLGL  298 (660)
T ss_dssp             HHHHHTTTC
T ss_pred             HHHHhhcCC
Confidence            999999865

>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1

Probab=97.96  E-value=2.1e-06  Score=71.71  Aligned_cols=30  Identities=13%  Similarity=0.006  Sum_probs=28.3

Q ss_pred             cceeeccC--CCCceeeeeCCceeeeeeeEec
Q psy17706          8 LQHFRDTS--SKPPSETKEPPERSKEPTDRLT   37 (154)
Q Consensus         8 ~~~IRgl~--PwPga~t~l~GkrlKI~~~~l~   37 (154)
                      +++||||+  ||||||+.++|+++|||++++.
T Consensus       212 ~~~IRa~~~~p~PgA~t~~~g~~~ki~~a~~~  243 (260)
T 1zgh_A          212 YDYIRMLDGEGYPRAFIKYGKYRLEFSRASMK  243 (260)
T ss_dssp             HHHHHHTCSTTCCCCEEEETTEEEEEEEEEEE
T ss_pred             HHHHHhhCCCCCCcEEEEECCEEEEEEEEEEc
Confidence            68999996  9999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	154
d1fmta1	108	b.46.1.1 (A:207-314) Methionyl-tRNAfmet formyltran	0.001

>d1fmta1 b.46.1.1 (A:207-314) Methionyl-tRNAfmet formyltransferase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 108

class: All beta proteins
fold: FMT C-terminal domain-like
superfamily: FMT C-terminal domain-like
family: Post formyltransferase domain
domain: Methionyl-tRNAfmet formyltransferase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 54 FDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAVDFKNGY 93
           +   + ++V   DG  +    +  AGKK M+A D  N  
Sbjct: 59 LEANKQGIQVATGDG-ILNLLSLQPAGKKAMSAQDLLNSR 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	154
d1fmta1	108	Methionyl-tRNAfmet formyltransferase, C-terminal d	99.93
d2blna1	101	Polymyxin resistance protein ArnA, domain 2 {Esche	99.89
d2bw0a1	104	10-formyltetrahydrofolate dehydrogenase domain 2 {	99.89

>d1fmta1 b.46.1.1 (A:207-314) Methionyl-tRNAfmet formyltransferase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: FMT C-terminal domain-like
superfamily: FMT C-terminal domain-like
family: Post formyltransferase domain
domain: Methionyl-tRNAfmet formyltransferase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.5e-26  Score=166.23  Aligned_cols=81  Identities=21%  Similarity=0.167  Sum_probs=73.6

Q ss_pred             cceeeccCCCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCHH
Q psy17706          8 LQHFRDTSSKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTAV   87 (154)
Q Consensus         8 ~~~IRgl~PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA~   87 (154)
                      +|+||||+|||||||.++|+++|||++++.+.+    .+..||+|+... +++|.|+|+|| +|.|++||+||||+|+++
T Consensus        18 ~~~IRa~~p~Pga~~~~~~~~iki~~a~~~~~~----~~~~pG~v~~~~-~~~i~v~~~dg-~l~I~~vq~~gkk~m~~~   91 (108)
T d1fmta1          18 ERCIRAFNPWPMSWLEIEGQPVKVWKASVIDTA----TNAAPGTILEAN-KQGIQVATGDG-ILNLLSLQPAGKKAMSAQ   91 (108)
T ss_dssp             HHHHHHTTTTTCEEEEETTEEEEEEEEEEECCC----CCSCTTBEEEEE-TTEEEEECSBS-EEEEEEEEETTSCCEEHH
T ss_pred             HhhheeCCChhhhhhhccccceEEEEEEEeeec----cccccceEEEEC-CCcEEEEeCCc-eEEEEEEEcCCCCcccHH
Confidence            689999999999999999999999999987544    456799998554 57899999999 999999999999999999


Q ss_pred             HHHcccC
Q psy17706         88 DFKNGYL   94 (154)
Q Consensus        88 DFLNG~~   94 (154)
                      ||+||++
T Consensus        92 df~~G~~   98 (108)
T d1fmta1          92 DLLNSRR   98 (108)
T ss_dssp             HHHHHSG
T ss_pred             HHHcCCc
Confidence            9999987

>d2blna1 b.46.1.1 (A:204-304) Polymyxin resistance protein ArnA, domain 2 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: FMT C-terminal domain-like
superfamily: FMT C-terminal domain-like
family: Post formyltransferase domain
domain: Polymyxin resistance protein ArnA, domain 2
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=5.5e-24  Score=150.57  Aligned_cols=80  Identities=14%  Similarity=0.102  Sum_probs=71.2

Q ss_pred             cceeeccC-CCCceeeeeCCceeeeeeeEecCcCCCCCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCCCCcCCH
Q psy17706          8 LQHFRDTS-SKPPSETKEPPERSKEPTDRLTEETNPITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAGKKKMTA   86 (154)
Q Consensus         8 ~~~IRgl~-PwPga~t~l~GkrlKI~~~~l~~~~~~~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eGKK~MsA   86 (154)
                      +++||||+ ||||||+.++++++|||++++.+..    ....||+|+ ..  +++.|+|+|| .|.|.+||++|||+|++
T Consensus        15 ~~~IRal~~p~pga~~~~~~~~ikI~~~~~~~~~----~~~~~G~i~-~~--~~l~V~~~dG-~i~i~~lq~~gkk~m~a   86 (101)
T d2blna1          15 HNMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHA----SKAQPGSVI-SV--APLLIACGDG-ALEIVTGQAGDGITMQG   86 (101)
T ss_dssp             HHHHHHTCTTSCCEEEEETTEEEEEEEEEEECSC----CCSCTTBEE-EE--TTEEEECSBS-EEEEEEEEETTSCCEEH
T ss_pred             HHhhhcCCCCCCceeeccCCceEEEEEEEeeccc----cccccccee-ec--ccEEEEecCC-eEEEEEEECCCCcccCH
Confidence            68999995 8999999999999999999987543    556799986 33  4599999999 99999999999999999


Q ss_pred             HHHHcccCC
Q psy17706         87 VDFKNGYLG   95 (154)
Q Consensus        87 ~DFLNG~~~   95 (154)
                      +||+||+.+
T Consensus        87 ~df~ng~~l   95 (101)
T d2blna1          87 SQLAQTLGL   95 (101)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHccCCC
Confidence            999999875

>d2bw0a1 b.46.1.1 (A:204-307) 10-formyltetrahydrofolate dehydrogenase domain 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: FMT C-terminal domain-like
superfamily: FMT C-terminal domain-like
family: Post formyltransferase domain
domain: 10-formyltetrahydrofolate dehydrogenase domain 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.4e-24  Score=151.20  Aligned_cols=80  Identities=19%  Similarity=0.183  Sum_probs=66.3

Q ss_pred             cceeeccCCCCceeeeeCCceeeeeeeEecCcCCC-------CCCCCCCcEEEEeeCCCeEEEEeCCCcEEEEceeecCC
Q psy17706          8 LQHFRDTSSKPPSETKEPPERSKEPTDRLTEETNP-------ITPELTPGFVSFDRGSKLLRVRCVDGKSILCSQITVAG   80 (154)
Q Consensus         8 ~~~IRgl~PwPga~t~l~GkrlKI~~~~l~~~~~~-------~~~~~~PGtIv~~~~~~gL~VacgDG~~L~I~eVQ~eG   80 (154)
                      +++||||+|||||||.++|+++|||.+.+.+....       ......||.|+   +++.++|+|+|| +|.|++||++|
T Consensus        18 ~~~IRal~P~Pga~t~~~~~~~ki~~~~~~~~~~~~~~~~~~~~~~~~~g~v~---~~~~~~v~~~~g-~l~i~~lq~~G   93 (104)
T d2bw0a1          18 HNWIRGNDKVPGAWTEACEQKLTFFNSTLNTSGLVPEGDALPIPGAHRPGVVT---KAGLILFGNDDK-MLLVKNIQLED   93 (104)
T ss_dssp             HHHHHTTTTTTCCEEEETTEEEEEEEEESCCTTCCCCSEEECCTTCSSCEEEE---TTEEEEECTTSC-EEEEEEEECTT
T ss_pred             HHHHhccCCCCceeEeeCCcEEEEEEEEEeccccccccceeecccCCCCEEEE---eCCCEEEecCCc-eEEEEEEECCC
Confidence            68999999999999999999999999987653311       12234577664   246788999999 99999999999


Q ss_pred             CCcCCHHHHHc
Q psy17706         81 KKKMTAVDFKN   91 (154)
Q Consensus        81 KK~MsA~DFLN   91 (154)
                      ||+|+|+||++
T Consensus        94 Kk~m~a~dflr  104 (104)
T d2bw0a1          94 GKMILASNFFK  104 (104)
T ss_dssp             SCEEEGGGTTC
T ss_pred             CCEecHHHhhC
Confidence            99999999985