Psyllid ID: psy17724

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MNVGVQTKIIVEGRFRPIIAAVTGRLKARVVMVTKMVSMGGPHWWSRERHHELPHHHVGVYAWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHSKFNYEIIS
Secondary Structure (PSIPRED)
ccccEEEEEEEcccEEEEEEEEccEEEEEEEcccEEEccccEEEEccccEEEEcccccEEEEEEEccccccccccEEEEEcccccEEEEEEEEEccEEEEEEEEccccEEEEEEccEEEEEcEEEEEc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEcccccEEEEEcccccccEEEEEEEEcccccccccccccEEEEEEEEEEEEEEEccccccccccEEEcccccccEEEEEEEEEccccEccEEEccccEEEEEcccEEEEcccEEEEc
Coil and Loop (DISEMBL)
MNVGVQTKIIVEGRFRPIIAAVTGRLKARVVMVTKMVSmggphwwsrerhhelphhhvgVYAWvscsngevpanavkvgrdedggrtyvgrarhegdllpakvapshggafvpwgglehskFNYEIIS
Flexible Loop (DISEMBL)
mnvgvqtkiivegrfrpiiaavtGRLKARVVMVTKMVSMGGPHWWSRERHHELPHHHVGVYAWVSCSNGEVPANavkvgrdedgGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHSKFNYEIIS
Low Complexity Region (SEG)
MNVGVQTKIIVEGRFRPIIAAVTGRLKARVVMVTKMVSMGGPHWWSRERHHELPHHHVGVYAWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHSKFNYEIIS
Disordered region (IsUnstruct)
****VQTKIIVEGRFRPIIAAVTGRLKARVVMVTKMVSMGGPHWWSRERHHELPHHHVGVYAWVSCSNGEVPANAVKVGR****GRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHSKFNYEI**
Disordered Region (DISOPRED)
*******KIIVEGRFRPIIAAVTGRLKARVVMVTKMVSMGGPHWWSRERHHELPHHHVGVYAWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHSKFNYEIIS
Disordered Region (DISEMBL)
MNVGVQTKIIVEGRFRPIIAAVTGRLKARVVMVTKMVSMGGPHWWSRERHHELPHHHVGVYAWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHSKFNYEIIS
Disordered Region (DISPRO)
*NVGVQTKIIVEGRFRPIIAAVTGRLKARVVMVTKMVSMGGPHWWSRERHHELPHHHVGVYAWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHSKFNYEIIS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNVGVQTKIIVEGRFRPIIAAVTGRLKARVVMVTKMVSMGGPHWWSRERHHELPHHHVGVYAWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHSKFNYEIIS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
357605925	366	hypothetical protein KGM_05702 [Danaus p	0.523	0.183	0.529	2e-13
357611218	144	hypothetical protein KGM_18250 [Danaus p	0.5	0.444	0.545	3e-13
193713737	454	PREDICTED: hypothetical protein LOC10016	0.859	0.242	0.363	6e-12
195426451	340	GK20771 [Drosophila willistoni] gi|19415	0.625	0.235	0.439	1e-11
289740079	290	hypothetical conserved protein [Glossina	0.515	0.227	0.537	2e-11
195120007	285	GI19977 [Drosophila mojavensis] gi|19390	0.515	0.231	0.492	2e-11
195382679	296	GJ21924 [Drosophila virilis] gi|19414485	0.578	0.25	0.493	2e-11
195066917	272	GH23671 [Drosophila grimshawi] gi|193899	0.523	0.246	0.492	3e-11
195027956	285	GH20307 [Drosophila grimshawi] gi|193902	0.523	0.235	0.492	3e-11
350537189	167	uncharacterized protein LOC100164577 [Ac	0.515	0.395	0.492	4e-11

>gi|357605925|gb|EHJ64838.1| hypothetical protein KGM_05702 [Danaus plexippus]

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 47/68 (69%)

Query: 60  VYAWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEH 119
           + +WV  SNG+ PAN++  G D  G   YV RA HEGDL+P K+  SH GAF+PWGG+E 
Sbjct: 225 IMSWVKASNGDAPANSLVAGYDVTGEPIYVARAEHEGDLVPGKLVSSHKGAFLPWGGMEI 284

Query: 120 SKFNYEII 127
           SK  YE++
Sbjct: 285 SKKEYEVL 292

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357611218|gb|EHJ67373.1| hypothetical protein KGM_18250 [Danaus plexippus]

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 46/66 (69%)

Query: 62  AWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHSK 121
           +WV  SNG+ PAN++  G D  G   YV RA HEGDL+P K+  SH GAF+PWGG+E SK
Sbjct: 2   SWVKASNGDAPANSLVAGYDVTGEPIYVARAEHEGDLVPGKLVSSHKGAFLPWGGMEISK 61

Query: 122 FNYEII 127
             YE++
Sbjct: 62  KEYEVL 67

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193713737|ref|XP_001944506.1| PREDICTED: hypothetical protein LOC100169062 [Acyrthosiphon pisum]

 Score = 75.9 bits (185), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 58/110 (52%)

Query: 18  IIAAVTGRLKARVVMVTKMVSMGGPHWWSRERHHELPHHHVGVYAWVSCSNGEVPANAVK 77
           I  A   + K+++V   K   + G    +      L     G   WV  SNG++P NA+ 
Sbjct: 271 IHGAADDQFKSKIVATPKPKPLKGKAPPAASPGWNLDGPSSGPVHWVHASNGQIPPNALP 330

Query: 78  VGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHSKFNYEII 127
            G D    + YV RA H G L+P K+ PSHG  ++PWGG+E+ K NYE++
Sbjct: 331 GGFDATNEQLYVARAEHNGALIPGKLVPSHGVVYIPWGGIENPKENYEVL 380

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195426451|ref|XP_002061348.1| GK20771 [Drosophila willistoni] gi|194157433|gb|EDW72334.1| GK20771 [Drosophila willistoni]

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 49  RHHELPHHHVGVY--AWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPS 106
           + H L  + V V    W+S S   +    V  G D DG   YVGRA HEGDL+PAKV P+
Sbjct: 186 KEHSLEAYEVLVQPETWISSSGSNIVPGTVLAGHDADGDTIYVGRAYHEGDLVPAKVIPN 245

Query: 107 HGGAFVPWGGLEHSKFNYEIIS 128
            G A++P+GGLE+ K+++E+++
Sbjct: 246 KGCAYLPYGGLEYVKYDFELLA 267

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289740079|gb|ADD18787.1| hypothetical conserved protein [Glossina morsitans morsitans]

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 62  AWVSCSNGE-VPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHS 120
            W+ C++G  +P+ AV  G D DG   YVGR+ HEGD LPAKV P  G AFV WGG EH 
Sbjct: 4   TWIHCTSGSSLPSGAVVGGHDCDGSPIYVGRSTHEGDNLPAKVIPCKGCAFVCWGGAEHM 63

Query: 121 KFNYEII 127
           K +YE++
Sbjct: 64  KHHYEVL 70

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195120007|ref|XP_002004520.1| GI19977 [Drosophila mojavensis] gi|193909588|gb|EDW08455.1| GI19977 [Drosophila mojavensis]

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 45/67 (67%)

Query: 61  YAWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHS 120
           Y W+  SNGEVP +A++VG+  DG   YVGR   +G L P KV PSHG  ++P+GG EH 
Sbjct: 75  YCWIPASNGEVPPHALRVGQTSDGEPLYVGRGYFQGSLTPGKVHPSHGCLYIPYGGAEHR 134

Query: 121 KFNYEII 127
             +YE++
Sbjct: 135 LESYEVL 141

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195382679|ref|XP_002050057.1| GJ21924 [Drosophila virilis] gi|194144854|gb|EDW61250.1| GJ21924 [Drosophila virilis]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 54  PHHHVGVYAWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVP 113
           P    G   WV+ +NGEVPANA++ G D    + Y+ RARHEGDL+P K+ PSHG  +V 
Sbjct: 150 PPTGSGAGCWVAAANGEVPANAMQGGFDSSE-QLYIARARHEGDLIPGKLHPSHGVTYVA 208

Query: 114 WGGLEHSKFNYEIIS 128
           WGG EH    YE++ 
Sbjct: 209 WGGGEHGHNEYEVLC 223

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195066917|ref|XP_001996857.1| GH23671 [Drosophila grimshawi] gi|193899669|gb|EDV98535.1| GH23671 [Drosophila grimshawi]

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 45/67 (67%)

Query: 62  AWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHSK 121
            WV+ S   +    +  G D DG   YVGRA HEGDLLPAKV P+ G A+VP+GG EH K
Sbjct: 133 TWVNSSGSNIVPGTILAGHDCDGDAIYVGRAYHEGDLLPAKVIPNKGCAYVPYGGQEHVK 192

Query: 122 FNYEIIS 128
           +++E+++
Sbjct: 193 YDFELLA 199

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195027956|ref|XP_001986848.1| GH20307 [Drosophila grimshawi] gi|193902848|gb|EDW01715.1| GH20307 [Drosophila grimshawi]

 Score = 73.2 bits (178), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 45/67 (67%)

Query: 62  AWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHSK 121
            WV+ S   +    +  G D DG   YVGRA HEGDLLPAKV P+ G A+VP+GG EH K
Sbjct: 146 TWVNSSGSNIVPGTILAGHDCDGDAIYVGRAYHEGDLLPAKVIPNKGCAYVPYGGQEHVK 205

Query: 122 FNYEIIS 128
           +++E+++
Sbjct: 206 YDFELLA 212

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350537189|ref|NP_001233092.1| uncharacterized protein LOC100164577 [Acyrthosiphon pisum] gi|239790499|dbj|BAH71807.1| ACYPI005577 [Acyrthosiphon pisum]

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 47/67 (70%), Gaps = 1/67 (1%)

Query: 63  WVSCSNGE-VPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHSK 121
           WV C++G+ +P  AV  G D+ G   Y GRA +EGDLLPAK+ PSH  A+V WGG+EH+ 
Sbjct: 22  WVPCNSGDPLPRGAVHAGTDKGGDPLYAGRAFYEGDLLPAKINPSHSSAYVCWGGMEHAL 81

Query: 122 FNYEIIS 128
            ++E++ 
Sbjct: 82  SHFEVLC 88

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
FB|FBgn0034583	308	CG10527 [Drosophila melanogast	0.531	0.220	0.507	8.1e-15
FB|FBgn0033787	286	CG13321 [Drosophila melanogast	0.617	0.276	0.481	1.3e-13
FB|FBgn0034312	263	CG10916 [Drosophila melanogast	0.523	0.254	0.388	7.1e-07

FB|FBgn0034583 CG10527 [Drosophila melanogaster (taxid:7227)]

 Score = 190 (71.9 bits), Expect = 8.1e-15, P = 8.1e-15
 Identities = 35/69 (50%), Positives = 45/69 (65%)

Query:    59 GVYAWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLE 118
             G   WV  +NGEVP NA++ G D    + Y+ RARHEGDL+P K+ PSHG  +V WGG E
Sbjct:   167 GPGCWVPAANGEVPPNALEGGFDSSE-QLYIARARHEGDLIPGKLHPSHGVTYVAWGGGE 225

Query:   119 HSKFNYEII 127
             H    YE++
Sbjct:   226 HGHAEYEVL 234

GO:0019010 "farnesoic acid O-methyltransferase activity" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=IDA

FB|FBgn0033787 CG13321 [Drosophila melanogaster (taxid:7227)]

 Score = 178 (67.7 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 40/83 (48%), Positives = 52/83 (62%)

Query:    49 RHHELPHHHVGVY--AWVSCSN-GEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAP 105
             + H L  + V V    W++ S  G VP   V  G D DG + YVGRA HEGDLLPAKV P
Sbjct:   132 QEHRLEAYEVLVQPETWIASSGRGIVPGTVVG-GHDADGDQIYVGRAYHEGDLLPAKVIP 190

Query:   106 SHGGAFVPWGGLEHSKFNYEIIS 128
             + G A+VP+GG E  K +YE+++
Sbjct:   191 NKGCAYVPYGGGEVVKHDYELLA 213

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0034312 CG10916 [Drosophila melanogaster (taxid:7227)]

 Score = 118 (46.6 bits), Expect = 7.1e-07, P = 7.1e-07
 Identities = 26/67 (38%), Positives = 35/67 (52%)

Query:    61 YAWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHS 120
             Y WV   +G  P +A+  G  E G  TY GR  ++G L   KV PSH   ++P  G E S
Sbjct:   187 YKWVPGQHGTYPRDALNTGYSELGEVTYTGRGLYQGILRLGKVHPSHKVMYIPHHGQEVS 246

Query:   121 KFNYEII 127
                YE++
Sbjct:   247 VNTYEVL 253


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.446    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      128       128   0.00091  102 3  11 22  0.39    31
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  575 (61 KB)
  Total size of DFA:  142 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:03
  No. of threads or processors used:  24
  Search cpu time:  11.64u 0.08s 11.72t   Elapsed:  00:00:02
  Total cpu time:  11.64u 0.08s 11.72t   Elapsed:  00:00:05
  Start:  Thu Aug 15 11:13:24 2013   End:  Thu Aug 15 11:13:29 2013

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	128
smart00696	71	smart00696, DM9, Repeats found in Drosophila prote	8e-27
pfam11901	118	pfam11901, DUF3421, Protein of unknown function (D	1e-20
pfam11901	118	pfam11901, DUF3421, Protein of unknown function (D	2e-17

>gnl|CDD|128937 smart00696, DM9, Repeats found in Drosophila proteins

 Score = 94.3 bits (235), Expect = 8e-27
 Identities = 36/66 (54%), Positives = 44/66 (66%)

Query: 61  YAWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHS 120
           Y WV  S+G +P NAV  G D DG   YVGRA +EG LLP KV PSHG A++P+GG E  
Sbjct: 2   YVWVPSSDGNIPPNAVVGGTDSDGEPLYVGRAYYEGSLLPGKVVPSHGCAYIPYGGQEVR 61

Query: 121 KFNYEI 126
             +YE+
Sbjct: 62  LDSYEV 67

Length = 71

>gnl|CDD|221302 pfam11901, DUF3421, Protein of unknown function (DUF3421)

 Score = 80.3 bits (199), Expect = 1e-20
 Identities = 33/74 (44%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 51  HELPHHHV----GVYAWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPS 106
            E   + V    G   WV  S G VP NAV  GR EDG   Y+GR  ++G L P KV PS
Sbjct: 43  IEKTTYEVLCGTGFVEWVPSSGGNVPKNAVLAGRTEDGEPLYIGRGHYDGSLTPGKVHPS 102

Query: 107 HGGAFVPWGGLEHS 120
           HG  ++P+GG E  
Sbjct: 103 HGCCYIPYGGAELR 116

This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 119 to 296 amino acids in length. Length = 118

>gnl|CDD|221302 pfam11901, DUF3421, Protein of unknown function (DUF3421)

 Score = 71.9 bits (177), Expect = 2e-17
 Identities = 29/49 (59%), Positives = 34/49 (69%)

Query: 78  VGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHSKFNYEI 126
            G D DG   YVGRA+HEGD+LPAKV PS G  +VP+GG E  K  YE+
Sbjct: 2   GGHDSDGATIYVGRAKHEGDILPAKVVPSKGACYVPYGGKEIEKTTYEV 50

This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 119 to 296 amino acids in length. Length = 118

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
smart00696	71	DM9 Repeats found in Drosophila proteins.	99.96
PF11901	119	DUF3421: Protein of unknown function (DUF3421); In	99.94
PF11901	119	DUF3421: Protein of unknown function (DUF3421); In	99.77

>smart00696 DM9 Repeats found in Drosophila proteins

Probab=99.96  E-value=2.9e-29  Score=170.10  Aligned_cols=69  Identities=52%  Similarity=0.920  Sum_probs=67.4

Q ss_pred             ceeEEeCCCCccCCCceEEEecCCCCeEEEEEEEeCCcEEeEEEecCCCEEEEeeCCEEeeeceEeEeC
Q psy17724         60 VYAWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHSKFNYEIIS  128 (128)
Q Consensus        60 ~~~WV~~~~G~IP~nAV~gG~d~dGe~LYVGRa~h~G~l~PGKV~p~~~~c~IpygG~E~~~~~YEVLc  128 (128)
                      .+.||++++|.+|+|||.+|+|+||++|||||+.|+|+++|||++|++++|||||+|+|+..++|||||
T Consensus         1 ~~~Wv~~~~g~vP~~AV~~G~~~~G~~lYvgR~~~~g~~~pGKv~p~~~~~yi~~~g~E~~~~~YEVLv   69 (71)
T smart00696        1 GYVWVPSSDGNIPPNAVVGGTDSDGEPLYVGRAYYEGSLLPGKVVPSHGCAYIPYGGQEVRLDSYEVLV   69 (71)
T ss_pred             CCEEEECCCCCCCCCcEEcccCCCCCEEEEEEEEECCcEEEEEEEccCCEEEEEECCEEEEcCeEEEEe
Confidence            368999999999999999999999999999999999999999999999999999999999999999998

>PF11901 DUF3421: Protein of unknown function (DUF3421); InterPro: IPR024518 This domain of unknown function is found in the fish toxin Natterin [] and in uncharacterised proteins

Probab=99.94  E-value=3.2e-26  Score=167.31  Aligned_cols=91  Identities=38%  Similarity=0.660  Sum_probs=81.8

Q ss_pred             EEEEEEeecCCCeeEEccCCcceeecC-------CCceeEEeCCCCccCCCceEEEecCCCCeEEEEEEEeCCcEEeEEE
Q psy17724         31 VMVTKMVSMGGPHWWSRERHHELPHHH-------VGVYAWVSCSNGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKV  103 (128)
Q Consensus        31 ~~~~k~v~~~g~~~~~~~~~~~l~~~~-------~~~~~WV~~~~G~IP~nAV~gG~d~dGe~LYVGRa~h~G~l~PGKV  103 (128)
                      ++-+|++|+++ .|+++|++.+.+.++       ...++||++++|.+|+|||++|++.||++|||||+.|+|+++|||+
T Consensus        22 ~~Pgkv~p~~~-~c~i~~gG~e~~~~~yEVL~~~~~~~~Wv~~~~g~iP~~av~~G~~~~Ge~lyIgR~~~~g~~~~GKv  100 (119)
T PF11901_consen   22 LLPGKVVPSKG-ACYIPYGGKEHSKTNYEVLCGDDNFYEWVPSSDGNIPPNAVVGGRTEDGEPLYIGRAHYNGSLIPGKV  100 (119)
T ss_pred             cEeeEEecCCC-EEEEECCcceEEeceEEeecCCCCccEEEECCCCCcCCCcEEcccccCCCEEEEEEEEECCeeEEEEE
Confidence            47799999987 555789999888762       2237999999999999999999999999999999999999999999


Q ss_pred             ecCCCEEEEeeCCEEeeec
Q psy17724        104 APSHGGAFVPWGGLEHSKF  122 (128)
Q Consensus       104 ~p~~~~c~IpygG~E~~~~  122 (128)
                      ++++++|||||+|+|++++
T Consensus       101 ~~s~~~~~ip~gG~E~~~k  119 (119)
T PF11901_consen  101 HPSHKCCYIPYGGKEISFK  119 (119)
T ss_pred             EcCCCEEEEEECCEEEEcC
Confidence            9999999999999999863

>PF11901 DUF3421: Protein of unknown function (DUF3421); InterPro: IPR024518 This domain of unknown function is found in the fish toxin Natterin [] and in uncharacterised proteins

Probab=99.77  E-value=6.8e-19  Score=128.67  Aligned_cols=52  Identities=60%  Similarity=1.112  Sum_probs=50.8

Q ss_pred             EEEecCCCCeEEEEEEEeCCcEEeEEEecCCCEEEEeeCCEEeeeceEeEeC
Q psy17724         77 KVGRDEDGGRTYVGRARHEGDLLPAKVAPSHGGAFVPWGGLEHSKFNYEIIS  128 (128)
Q Consensus        77 ~gG~d~dGe~LYVGRa~h~G~l~PGKV~p~~~~c~IpygG~E~~~~~YEVLc  128 (128)
                      ++|+|.||++||||||+|+|+++|||+.|+++.||+||+|+|+..++|||||
T Consensus         1 ~~G~d~~g~~iYV~Ra~~~g~~~Pgkv~p~~~~c~i~~gG~e~~~~~yEVL~   52 (119)
T PF11901_consen    1 QGGHDSDGEPIYVGRAKHEGDLLPGKVVPSKGACYIPYGGKEHSKTNYEVLC   52 (119)
T ss_pred             CCccCCCCCEEEEEEEEECCccEeeEEecCCCEEEEECCcceEEeceEEeec
Confidence            4799999999999999999999999999999999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
2bjr_A	368	MFP2B; motility, nematode, MSP; 1.8A {Ascaris suum	89.85
2bjq_A	345	MFP2A; motility, nematode, MSP; 1.75A {Ascaris suu	81.18

>2bjr_A MFP2B; motility, nematode, MSP; 1.8A {Ascaris suum} SCOP: b.169.1.1 b.169.1.1

Probab=89.85  E-value=0.58  Score=39.69  Aligned_cols=67  Identities=16%  Similarity=0.222  Sum_probs=54.1

Q ss_pred             CceeEEeCC-CCccCCCceEEEecCCCCeEEEEEEEeCCcEEeEEEecCCC--EEEEeeCCEEee-----eceEeEeC
Q psy17724         59 GVYAWVSCS-NGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHG--GAFVPWGGLEHS-----KFNYEIIS  128 (128)
Q Consensus        59 ~~~~WV~~~-~G~IP~nAV~gG~d~dGe~LYVGRa~h~G~l~PGKV~p~~~--~c~IpygG~E~~-----~~~YEVLc  128 (128)
                      ..-+|.... ...+|+|+|.+--.   .-.||+.=+.+|.-+-|++..+.+  .|.++|++.|++     .-..+||+
T Consensus         7 ~eD~W~d~~iG~PfP~npV~a~g~---~nqYVALWYkhG~PI~GRAWn~~G~V~asF~~~~~E~tg~~d~~GsIQlL~   81 (368)
T 2bjr_A            7 KEDTWAFGPIGSPFPDNPVKALGQ---QNMYVALWYKNGRPMHGRAWNNGGVIECSFPYNKSELTGVKDLGGQIQVLQ   81 (368)
T ss_dssp             CCCEEEEEETTSCCCSSBCBCTTC---SSCEEEEEEETTEEEEEEEEEETTEEEEEEEETTEEECSHHHHCSEEEEEE
T ss_pred             ccccceecccCCCCCCccccCCCc---cceEEEEEecCCccceeeeecCCCcEEEEEecCCceeccccccCCeEEEEE
Confidence            345788877 56799999998433   349999999999999999997654  599999999998     34778774

>2bjq_A MFP2A; motility, nematode, MSP; 1.75A {Ascaris suum} SCOP: b.169.1.1 b.169.1.1

Probab=81.18  E-value=3.7  Score=34.51  Aligned_cols=66  Identities=18%  Similarity=0.302  Sum_probs=52.1

Q ss_pred             ceeEEeCC-CCccCCCceEEEecCCCCeEEEEEEEeCCcEEeEEEecCCC--EEEEeeCCEEeee-----ceEeEeC
Q psy17724         60 VYAWVSCS-NGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHG--GAFVPWGGLEHSK-----FNYEIIS  128 (128)
Q Consensus        60 ~~~WV~~~-~G~IP~nAV~gG~d~dGe~LYVGRa~h~G~l~PGKV~p~~~--~c~IpygG~E~~~-----~~YEVLc  128 (128)
                      .-.|.... ...+|++++..   .+-...|++..+..|....|++....+  .|.++|++.|++-     -..+||+
T Consensus         7 eD~Wad~~~g~pfp~k~vk~---~~~~N~yvALwyKsGk~vlGRaWn~~G~V~csF~~~~~E~~g~~~~~GsiQiL~   80 (345)
T 2bjq_A            7 EDTWAYNTIGSPFPDNPVRV---KGQQNMYVALWYKFGKPIHGRAWNDNGNVECSFPYNKVELTGARDLGGQIQILT   80 (345)
T ss_dssp             CCEEEEEETTSCCCSSBCBC---TTCSSCEEEEEEETTEEEEEEEEEETTEEEEEEEETTEEECCTTTTTSEEEEEE
T ss_pred             ccchhhccccCccccccccC---CCccceEEEEEEEcCcEEEeeeecCCCcEEEEeecCCcccccccccCCeEEEEE
Confidence            45788877 45678888875   344479999999999999999997654  5999999999984     3667663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d2bjqa2	170	Sperm motility protein MFP2 {Pig roundworm (Ascari	90.18
d2bjra1	179	Sperm motility protein MFP2 {Pig roundworm (Ascari	83.18

>d2bjqa2 b.169.1.1 (A:5-174) Sperm motility protein MFP2 {Pig roundworm (Ascaris suum), isoform A [TaxId: 6253]}

class: All beta proteins
fold: MFPT repeat-like
superfamily: MFPT repeat-like
family: MFPT repeat
domain: Sperm motility protein MFP2
species: Pig roundworm (Ascaris suum), isoform A [TaxId: 6253]

Probab=90.18  E-value=0.32  Score=35.50  Aligned_cols=65  Identities=18%  Similarity=0.319  Sum_probs=51.6

Q ss_pred             eeEEeCC-CCccCCCceEEEecCCCCeEEEEEEEeCCcEEeEEEecCCC--EEEEeeCCEEeeec-----eEeEeC
Q psy17724         61 YAWVSCS-NGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHG--GAFVPWGGLEHSKF-----NYEIIS  128 (128)
Q Consensus        61 ~~WV~~~-~G~IP~nAV~gG~d~dGe~LYVGRa~h~G~l~PGKV~p~~~--~c~IpygG~E~~~~-----~YEVLc  128 (128)
                      -+|.... ...+|+|.|.+-   +-...||+.=+..|.-+-|++....+  .|.++|++.|++-.     ..+||+
T Consensus         4 D~W~d~~iG~pfP~npv~~~---g~~nqYVALWYkhG~Pv~GRaWnd~G~v~csF~~~~~E~~g~~d~~GsIQlL~   76 (170)
T d2bjqa2           4 DTWAYNTIGSPFPDNPVRVK---GQQNMYVALWYKFGKPIHGRAWNDNGNVECSFPYNKVELTGARDLGGQIQILT   76 (170)
T ss_dssp             CEEEEEETTSCCCSSBCBCT---TCSSCEEEEEEETTEEEEEEEEEETTEEEEEEEETTEEECCTTTTTSEEEEEE
T ss_pred             cceeecccCCCCCCCcccCC---CCCccEEEEeeccCCcceeeeecCCCeEEEEeccCCceeccccccCceEEEEE
Confidence            4688876 567999999883   23459999999999999999998754  59999999999543     566663

>d2bjra1 b.169.1.1 (A:6-184) Sperm motility protein MFP2 {Pig roundworm (Ascaris suum), isoform B [TaxId: 6253]}

class: All beta proteins
fold: MFPT repeat-like
superfamily: MFPT repeat-like
family: MFPT repeat
domain: Sperm motility protein MFP2
species: Pig roundworm (Ascaris suum), isoform B [TaxId: 6253]

Probab=83.18  E-value=1.4  Score=32.14  Aligned_cols=65  Identities=17%  Similarity=0.229  Sum_probs=49.8

Q ss_pred             ceeEEeCC-CCccCCCceEEEecCCCCeEEEEEEEeCCcEEeEEEecCCC--EEEEeeCCEEeee-----ceEeEe
Q psy17724         60 VYAWVSCS-NGEVPANAVKVGRDEDGGRTYVGRARHEGDLLPAKVAPSHG--GAFVPWGGLEHSK-----FNYEII  127 (128)
Q Consensus        60 ~~~WV~~~-~G~IP~nAV~gG~d~dGe~LYVGRa~h~G~l~PGKV~p~~~--~c~IpygG~E~~~-----~~YEVL  127 (128)
                      .-+|.... ...+|+|.|.+-   +-...||+.=+.+|.=+-|++....+  .|.++|++.|++.     ...+||
T Consensus         3 eD~W~~~~iG~pfP~npv~~~---g~~nqYVALWYk~G~Pi~GRaWn~~Gkv~~sF~~~~~e~tg~~d~~GsIQlL   75 (179)
T d2bjra1           3 EDTWAFGPIGSPFPDNPVKAL---GQQNMYVALWYKNGRPMHGRAWNNGGVIECSFPYNKSELTGVKDLGGQIQVL   75 (179)
T ss_dssp             CCEEEEEETTSCCCSSBCBCT---TCSSCEEEEEEETTEEEEEEEEEETTEEEEEEEETTEEECSHHHHCSEEEEE
T ss_pred             cceeeecccCCCCCCCcccCC---CCCccEEEEEecCCCCCccceecCCCeEEEEeecCCceeccccccCCcEEEE
Confidence            34688776 566899998873   33468999998888877799988754  5999999999943     356666