Psyllid ID: psy17733

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRFVRNPRGTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSELIEGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDIDLTGPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPERSVISGVVVSRTPDLEFGGPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPE
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEcccccccHHHHcccccccccccccHHcHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHcccHHHHccccccccccccccccccHHHHcccccccccccccEEEEEcccccccccccccEEEEEEEEEEEEEcccccccccccccccEEHHHHccccccccccccEEEcccccEEcccEEEccEEEEEccEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHEHHccHHHHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHccHHHHHHHHHHHHHHcccccccccccccccccccHHccccHHHHHcHHHHcccccccEEEEcccEEEccEEEEccEEEEEccEEEEEEccccHcHcccccccccEEEEEHHHHHcccccccEEEccccEEEccEEEEEcEEEEEccEEEEEEccccHHHHccccc
Coil and Loop (DISEMBL)
MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRfvrnprgtshpnatlEKVAQKEVPEDAIAHANQEFHAQVAVVSqssqangantcselmddseliEGEVAVVsqssqangantcselmddseliegggdididltgpvnistrarlispgvsaqgtlsiTSTELyfevdedcpdfrntdpersvisgvvvsrtpdlefggpvnistrarlispgvsaqgtlsiTSTELyfevdedcpdfrntdpe
Flexible Loop (DISEMBL)
MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLISaarrrdqgtagrILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRfvrnprgtshpnatlekvAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSELIEGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDIDLTGPVNISTRARlispgvsaqgtlSITSTELYFEVDEDCPDfrntdpersvisgvvvsrtpdlefggpvnistrarlispgvsaqgtlsITSTelyfevdedcpdfrntdpe
Low Complexity Region (SEG)
MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRFVRNPRGTSHPNATLEKVAQKEVPEDAIAHANQEFHaqvavvsqssqaNGANTCSELMDDSELIEGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDIDLTGPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPERSVISGVVVSRTPDLEFGGPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPE
Disordered region (IsUnstruct)
******EWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQT********RLCDHLISAAR***QGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWE***************************************************************************************************LIEGGGDIDIDLTGPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNT**ERSVISGVVVSRTPDLEFGGPVNISTRARLISPGVSAQGTLSITSTELYFEVDE***********
Disordered Region (DISOPRED)
*******WQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKHAELLSHAMKDHIVRVANEAEFIL******************AQ*************HLISAARRRDQGTAGRILDKVSNILSNKHGAW**NEAARTQEFWKLDSWEDDARRRKRFVRNPRGTSH************************************************************************************************VNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPERSVISGVVVSRTPDLEFGGPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCP********
Disordered Region (DISEMBL)
MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRFVRNPRGTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSELIEGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDIDLTGPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPERSVISGVVVSRTPDLEFGGPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPE
Disordered Region (DISPRO)
*LLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRFVRNPRGTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSELIEGEVAVVS*************LMDDSELIEGGGDIDIDLTGPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPERSVISGVVVSRTPDLEFGGPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRN****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRFVRNPRGTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSELIEGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDIDLTGPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPERSVISGVVVSRTPDLEFGGPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	388	2.2.26 [Sep-21-2011]
Q9W4E2	3578	Neurobeachin OS=Drosophil	yes	N/A	0.659	0.071	0.547	3e-92
Q9ESE1	2856	Lipopolysaccharide-respon	no	N/A	0.659	0.089	0.441	8e-69
Q9EPN1	2936	Neurobeachin OS=Mus muscu	no	N/A	0.652	0.086	0.475	1e-67
P50851	2863	Lipopolysaccharide-respon	yes	N/A	0.685	0.092	0.433	3e-67
Q8NFP9	2946	Neurobeachin OS=Homo sapi	no	N/A	0.652	0.085	0.472	4e-67
A8XSV3	2531	Putative neurobeachin hom	N/A	N/A	0.639	0.097	0.381	2e-51
Q19317	2507	Putative neurobeachin hom	yes	N/A	0.631	0.097	0.378	3e-50

>sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg PE=1 SV=3

 Score =  338 bits (868), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 184/336 (54%), Positives = 214/336 (63%), Gaps = 80/336 (23%)

Query: 1    MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
            MLLCSQEWQ SLQKHAGLAFIELINEGRLLS                             
Sbjct: 2559 MLLCSQEWQNSLQKHAGLAFIELINEGRLLS----------------------------- 2589

Query: 61   AELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLIS 120
                 HAMKDHIVRVANEAEFILNRMRADDVLKHA+FES CAQTL ERR+EER+CDHLI+
Sbjct: 2590 -----HAMKDHIVRVANEAEFILNRMRADDVLKHADFESQCAQTLLERREEERMCDHLIT 2644

Query: 121  AARRRDQGTAGRILDKVSNILSNKHGAW----------AYNEAARTQEFWKLDSWEDDAR 170
            AARRRD   A R+L+KV NI+ N+HGAW          A   A +   +WKLD+WEDDAR
Sbjct: 2645 AARRRDNVIASRLLEKVRNIMCNRHGAWGDSSSTSSGGAIVGAVQKSPYWKLDAWEDDAR 2704

Query: 171  RRKRFVRNPRGTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAV--VSQSSQANGANTC 228
            RRKR V+NPRG+SHP ATL+   +   PEDAI     EFH Q+AV     S Q NG    
Sbjct: 2705 RRKRMVQNPRGSSHPQATLKAALENGGPEDAILQTRDEFHTQIAVSRTHPSGQHNG---- 2760

Query: 229  SELMDDSELIEGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDIDLTGPVNISTRAR 288
             EL+DD+EL                      L++D EL       D+DLTGPVNIST+AR
Sbjct: 2761 -ELLDDAEL----------------------LIEDREL-------DLDLTGPVNISTKAR 2790

Query: 289  LISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPE 324
            LI+PG+ A GT+SITSTE++FEVDE+ P+F+  D E
Sbjct: 2791 LIAPGLVAPGTVSITSTEMFFEVDEEHPEFQKIDGE 2826

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. Required for correct retinal pattern formation and may function in cell fate determination through its interactions with the EGFR and Notch signaling pathways.
Drosophila melanogaster (taxid: 7227)

>sp|Q9ESE1|LRBA_MOUSE Lipopolysaccharide-responsive and beige-like anchor protein OS=Mus musculus GN=Lrba PE=1 SV=1

 Score =  261 bits (666), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 143/324 (44%), Positives = 197/324 (60%), Gaps = 68/324 (20%)

Query: 1    MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
            MLLCSQEWQ S+QK+AGLAFIEL+NEGRLLS                             
Sbjct: 1859 MLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQT--------------------------- 1891

Query: 61   AELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLIS 120
                   MKDH+VRVANEAEFIL+R RA+D+ +HAEFES CAQ   ++R+EE++CDHLI 
Sbjct: 1892 -------MKDHLVRVANEAEFILSRQRAEDIHRHAEFESLCAQYSADKREEEKMCDHLIR 1944

Query: 121  AARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRFVRNPR 180
            AA+ RD  TA +++ K+ N+L++KHGAW  +  +R +EFW+LD WEDD RRR+RFVRNP 
Sbjct: 1945 AAKYRDHVTATQLIQKIINLLTDKHGAWGSSAVSRPREFWRLDYWEDDLRRRRRFVRNPL 2004

Query: 181  GTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSELIEG 240
            G++HP ATL+   +    ED +A   Q   +Q A+ +Q+S+            +  L+EG
Sbjct: 2005 GSTHPEATLKTAVEHAADEDILAKGKQSIKSQ-ALGNQNSE------------NEALLEG 2051

Query: 241  EVAVVSQSSQANGANTCSELMDDSELIEGGGDIDIDLTGPVNISTRARLISPGVSAQGTL 300
            +   +S   + +  N                     L GPV++ST A+L++P V  +GTL
Sbjct: 2052 DDDTLSSVDEKDLEN---------------------LAGPVSLSTPAQLVAPSVVVKGTL 2090

Query: 301  SITSTELYFEVDEDCPDFRNTDPE 324
            S+TS+ELYFEVDE+ P+F+  DP+
Sbjct: 2091 SVTSSELYFEVDEEDPNFKKIDPK 2114

May be involved in coupling signal transduction and vesicle trafficking to enable polarized secretion and/or membrane deposition of immune effector molecules.

Mus musculus (taxid: 10090)

>sp|Q9EPN1|NBEA_MOUSE Neurobeachin OS=Mus musculus GN=Nbea PE=1 SV=1

 Score =  257 bits (656), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 153/322 (47%), Positives = 196/322 (60%), Gaps = 69/322 (21%)

Query: 1    MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
            MLLCSQEWQ S+QK+AGLAFIELINEGRLL H                            
Sbjct: 1931 MLLCSQEWQNSIQKNAGLAFIELINEGRLLCH---------------------------- 1962

Query: 61   AELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLIS 120
                  AMKDHIVRVANEAEFILNR RA+DV KHAEFES CAQ   +RR+EE++CDHLIS
Sbjct: 1963 ------AMKDHIVRVANEAEFILNRQRAEDVHKHAEFESQCAQYAADRREEEKMCDHLIS 2016

Query: 121  AARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRFVRNPR 180
            AA+ RD  TA ++  K+ NIL+NKHGAW     ++  +FW+LD WEDD RRR+RFVRN  
Sbjct: 2017 AAKHRDHVTANQLKQKILNILTNKHGAWGAVSHSQLHDFWRLDYWEDDLRRRRRFVRNAF 2076

Query: 181  GTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSELIEG 240
            G++H  A L+   +    ED +  + + F +Q A+V+Q+S+       +ELM     +EG
Sbjct: 2077 GSTHAEALLKSAVEYGTEEDVVK-SKKAFRSQ-AIVNQNSE-------TELM-----LEG 2122

Query: 241  EVAVVSQSSQANGANTCSELMDDSELIEGGGDIDIDLTGPVNISTRARLISPGVSAQGTL 300
            +                    DD+  +    +ID +L GPV +ST A+LI+P V A+GTL
Sbjct: 2123 D--------------------DDAVSLLQEKEID-NLAGPVVLSTPAQLIAPVVVAKGTL 2161

Query: 301  SITSTELYFEVDEDCPDFRNTD 322
            SIT+TE+YFEVDED   F+  D
Sbjct: 2162 SITTTEIYFEVDEDDAAFKKID 2183

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. May have a role in membrane trafficking.

Mus musculus (taxid: 10090)

>sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo sapiens GN=LRBA PE=1 SV=4

 Score =  256 bits (653), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/325 (43%), Positives = 199/325 (61%), Gaps = 59/325 (18%)

Query: 1    MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
            MLLCSQEWQ S+QK+AGLAFIEL+NEGRLLS                             
Sbjct: 1855 MLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQT--------------------------- 1887

Query: 61   AELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLIS 120
                   MKDH+VRVANEAEFIL+R RA+D+ +HAEFES CAQ   ++R++E++CDHLI 
Sbjct: 1888 -------MKDHLVRVANEAEFILSRQRAEDIHRHAEFESLCAQYSADKREDEKMCDHLIR 1940

Query: 121  AARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRFVRNPR 180
            AA+ RD  TA +++ K+ NIL++KHGAW  +  +R  EFW+LD WEDD RRR+RFVRNP 
Sbjct: 1941 AAKYRDHVTATQLIQKIINILTDKHGAWGNSAVSRPLEFWRLDYWEDDLRRRRRFVRNPL 2000

Query: 181  GTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSELIEG 240
            G++HP ATL+   +               H  +  + ++S+A          D+  L +G
Sbjct: 2001 GSTHPEATLKTAVE---------------HVCIFKLRENSKAT---------DEDILAKG 2036

Query: 241  EVAVVSQSSQANGANTCSELMDDSELIEGGGDIDI-DLTGPVNISTRARLISPGVSAQGT 299
            + ++ SQ+     +     L  D + +    + D+ +L GPV++ST A+L++P V  +GT
Sbjct: 2037 KQSIRSQALGNQNSENEILLEGDDDTLSSVDEKDLENLAGPVSLSTPAQLVAPSVVVKGT 2096

Query: 300  LSITSTELYFEVDEDCPDFRNTDPE 324
            LS+TS+ELYFEVDE+ P+F+  DP+
Sbjct: 2097 LSVTSSELYFEVDEEDPNFKKIDPK 2121

May be involved in coupling signal transduction and vesicle trafficking to enable polarized secretion and/or membrane deposition of immune effector molecules.

Homo sapiens (taxid: 9606)

>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3

 Score =  255 bits (651), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 152/322 (47%), Positives = 196/322 (60%), Gaps = 69/322 (21%)

Query: 1    MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
            MLLCSQEWQ S+QK+AGLAFIELINEGRLL H                            
Sbjct: 1941 MLLCSQEWQNSIQKNAGLAFIELINEGRLLCH---------------------------- 1972

Query: 61   AELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLIS 120
                  AMKDHIVRVANEAEFILNR RA+DV KHAEFES CAQ   +RR+EE++CDHLIS
Sbjct: 1973 ------AMKDHIVRVANEAEFILNRQRAEDVHKHAEFESQCAQYAADRREEEKMCDHLIS 2026

Query: 121  AARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRFVRNPR 180
            AA+ RD  TA ++  K+ NIL+NKHGAW     ++  +FW+LD WEDD RRR+RFVRN  
Sbjct: 2027 AAKHRDHVTANQLKQKILNILTNKHGAWGAVSHSQLHDFWRLDYWEDDLRRRRRFVRNAF 2086

Query: 181  GTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSELIEG 240
            G++H  A L+   +    ED +  + + F +Q A+V+Q+++       +ELM     +EG
Sbjct: 2087 GSTHAEALLKAAIEYGTEEDVVK-SKKTFRSQ-AIVNQNAE-------TELM-----LEG 2132

Query: 241  EVAVVSQSSQANGANTCSELMDDSELIEGGGDIDIDLTGPVNISTRARLISPGVSAQGTL 300
            +                    DD+  +    +ID +L GPV +ST A+LI+P V A+GTL
Sbjct: 2133 D--------------------DDAVSLLQEKEID-NLAGPVVLSTPAQLIAPVVVAKGTL 2171

Query: 301  SITSTELYFEVDEDCPDFRNTD 322
            SIT+TE+YFEVDED   F+  D
Sbjct: 2172 SITTTEIYFEVDEDDSAFKKID 2193

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins.

Homo sapiens (taxid: 9606)

>sp|A8XSV3|NBEA_CAEBR Putative neurobeachin homolog OS=Caenorhabditis briggsae GN=sel-2 PE=3 SV=1

 Score =  203 bits (516), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/320 (38%), Positives = 173/320 (54%), Gaps = 72/320 (22%)

Query: 1    MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
            MLLCSQEWQTSLQKHAGLAFIEL+NEGRL++H                            
Sbjct: 1509 MLLCSQEWQTSLQKHAGLAFIELVNEGRLMAH---------------------------- 1540

Query: 61   AELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLIS 120
                  A +DH++RVANEA+FILNR+RA+DV KHA+FE+   + L  R +E   CD LI 
Sbjct: 1541 ------ATRDHVLRVANEADFILNRLRAEDVSKHAQFEAESREQLNARYEEYSRCDLLIV 1594

Query: 121  AARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRFVRNPR 180
            + R RD   A R+LDK+S IL++       +++    +FWKLD WEDD+RRRKRFV NP 
Sbjct: 1595 SGRLRDSLNATRLLDKMSAILTDG------DDSKSGSQFWKLDVWEDDSRRRKRFVPNPY 1648

Query: 181  GTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSELIEG 240
            G+ H  A L +  + E PE                             SE     ++++G
Sbjct: 1649 GSRHEEANLPEGEKNEEPE----------------------------ISEQERIRKILKG 1680

Query: 241  EVAVVSQSSQANGANTCSELMDDSELIEGGGDIDIDLTG-PVNISTRARLISPGVSAQGT 299
               + SQ      +    EL+D+S++ +   ++D   +      ST A+LI PGV   GT
Sbjct: 1681 ---LFSQRHATTTSTGGQELVDESDIDKWAQEVDPTPSSQSACFSTAAKLIVPGVVVPGT 1737

Query: 300  LSITSTELYFEVDEDCPDFR 319
            LS+T+++L+F+ +E  P+++
Sbjct: 1738 LSVTASDLFFDANESDPNYK 1757

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. Regulates endosomal traffic in polarized epithelial cells such as the vulval precursor cells and intestinal cells. Thought to act as a negative regulator of lin-12 activity in vulval precursor cells. May have a role in the internalization process from basolateral surface of polarized epithelial cells.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q19317|NBEA_CAEEL Putative neurobeachin homolog OS=Caenorhabditis elegans GN=sel-2 PE=2 SV=3

 Score =  199 bits (506), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 121/320 (37%), Positives = 178/320 (55%), Gaps = 75/320 (23%)

Query: 1    MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
            MLLCSQEWQTSLQKHAGLAFIEL+NEGRL++H                            
Sbjct: 1488 MLLCSQEWQTSLQKHAGLAFIELVNEGRLMAH---------------------------- 1519

Query: 61   AELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLIS 120
                  A +DH++RVANEA+FILNR+RA+DV KHA+FE+   + L  R +E   CD LI+
Sbjct: 1520 ------ATRDHVLRVANEADFILNRLRAEDVSKHAQFEAESREQLAARHEEYGRCDLLIA 1573

Query: 121  AARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRFVRNPR 180
            + R RD   A R+L+K+S ILS++      +++    +FWKLD WEDD+RRRKRFV N  
Sbjct: 1574 SGRLRDSINATRLLEKMSAILSDQ------DDSKSGTQFWKLDVWEDDSRRRKRFVPNAY 1627

Query: 181  GTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSELIEG 240
            G+ H  A L +  + E PE                             SE     ++++G
Sbjct: 1628 GSRHEEANLPEGEKNEEPE----------------------------ISEQEKIRKVLKG 1659

Query: 241  EVAVVSQSSQANGANTCSELMDDSELIEGGGDIDIDLTG-PVNISTRARLISPGVSAQGT 299
               + S+   ++G++   EL+D+S++ +   ++D   +      ST A+LI+PGV   GT
Sbjct: 1660 ---LFSKRQNSSGSH---ELVDESDIDKWAQEVDPTPSSQSACFSTTAKLIAPGVVVPGT 1713

Query: 300  LSITSTELYFEVDEDCPDFR 319
            LS+T+ +L+F+ +E  P+++
Sbjct: 1714 LSVTANDLFFDANESDPNYK 1733

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins (By similarity). Regulates endosomal traffic in polarized epithelial cells such as the vulval precursor cells and intestinal cells. Thought to act as a negative regulator of lin-12 activity in vulval precursor cells. May have a role in the internalization process from basolateral surface of polarized epithelial cells.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	388
307205111	2412	Neurobeachin [Harpegnathos saltator]	0.675	0.108	0.560	4e-94
328714736	3079	PREDICTED: neurobeachin-like [Acyrthosip	0.667	0.084	0.576	7e-94
383855622	3257	PREDICTED: neurobeachin-like [Megachile	0.664	0.079	0.564	8e-94
332025329	2377	Neurobeachin [Acromyrmex echinatior]	0.672	0.109	0.562	9e-94
380020287	2983	PREDICTED: neurobeachin-like [Apis flore	0.664	0.086	0.564	9e-94
328788933	2942	PREDICTED: neurobeachin-like, partial [A	0.664	0.087	0.564	1e-93
350417191	3204	PREDICTED: neurobeachin-like [Bombus imp	0.664	0.080	0.561	2e-93
322794630	2330	hypothetical protein SINV_14055 [Solenop	0.664	0.110	0.558	2e-93
340715018	3204	PREDICTED: neurobeachin-like [Bombus ter	0.664	0.080	0.561	2e-93
270005522	2431	hypothetical protein TcasGA2_TC007591 [T	0.711	0.113	0.534	1e-92

>gi|307205111|gb|EFN83576.1| Neurobeachin [Harpegnathos saltator]

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 186/332 (56%), Positives = 215/332 (64%), Gaps = 70/332 (21%)

Query: 1    MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
            MLLCSQEWQ SLQKHAGLAFIELINEGRLLS                             
Sbjct: 2128 MLLCSQEWQNSLQKHAGLAFIELINEGRLLS----------------------------- 2158

Query: 61   AELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLIS 120
                 HAMKDHIVRVANEAEFILNRMRADDVLKHA+FES CAQTL +RR+EER+CDHLI+
Sbjct: 2159 -----HAMKDHIVRVANEAEFILNRMRADDVLKHADFESQCAQTLLDRREEERMCDHLIT 2213

Query: 121  AARRRDQGTAGRILDKVSNILSNKHGAWAYNE--AARTQEFWKLDSWEDDARRRKRFVRN 178
            AARRRD   A R+L+KV NILSNKHGAW Y +  AA+  E+WKLD+WEDDARRRKRFV N
Sbjct: 2214 AARRRDNVIASRLLEKVRNILSNKHGAWGYMDPMAAKLAEYWKLDAWEDDARRRKRFVHN 2273

Query: 179  PRGTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSELI 238
            P G+SHP ATL+   +   PEDAI  A QEFHA +A                        
Sbjct: 2274 PLGSSHPEATLKAALEHGAPEDAILQARQEFHAHLA------------------------ 2309

Query: 239  EGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDIDLTGPVNISTRARLISPGVSAQG 298
                A  +   Q   A+    LMDDSEL+    D+D DL GPVNIST+ +LI+PG+ A G
Sbjct: 2310 ----ASRAHQQQLQSAD----LMDDSELLSDDRDLDNDLAGPVNISTKGKLIAPGIVAPG 2361

Query: 299  TLSITSTELYFEVDEDCPDFRNTDPERSVISG 330
             +S+TSTELYFEVDED P+F+  D E  +I+G
Sbjct: 2362 IISVTSTELYFEVDEDDPEFKKIDSE--LITG 2391

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328714736|ref|XP_001947075.2| PREDICTED: neurobeachin-like [Acyrthosiphon pisum]

 Score =  350 bits (898), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 189/328 (57%), Positives = 213/328 (64%), Gaps = 69/328 (21%)

Query: 1    MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
            MLLCSQEWQ SLQKHAGLAFIELINEGRLLS                             
Sbjct: 2067 MLLCSQEWQNSLQKHAGLAFIELINEGRLLS----------------------------- 2097

Query: 61   AELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLIS 120
                 HAMKDHIVRVANEAEFILNRMRADDVLKHA+FE+HCA T  ERR+EE++CDHLI+
Sbjct: 2098 -----HAMKDHIVRVANEAEFILNRMRADDVLKHADFEAHCALTTLERREEEKMCDHLIT 2152

Query: 121  AARRRDQGTAGRILDKVSNILSNKHGAWAY---NEAARTQEFWKLDSWEDDARRRKRFVR 177
            AARRRD   A RILDK+ NILSNKHGAW Y   N   R  +FWKLD WEDDARRRKRFV 
Sbjct: 2153 AARRRDSVVASRILDKICNILSNKHGAWGYLHENIPIRMSQFWKLDVWEDDARRRKRFVP 2212

Query: 178  NPRGTSHPNATLEKVAQKEVPEDAIAHANQE-FHAQVAVVSQSSQANGANTCSELMDDSE 236
            NPRGT+HP ATL+   +   P+DAI  A +E FHAQ  +V+ S+Q+   +  S+L+DDSE
Sbjct: 2213 NPRGTTHPEATLKAALEHGAPQDAILQAREEVFHAQ--LVAMSTQSGPGSQSSDLLDDSE 2270

Query: 237  LIEGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDIDLTGPVNISTRARLISPGVSA 296
            L                      + DD EL       D DL GPVNISTRA LIS GV A
Sbjct: 2271 L----------------------MTDDREL-------DADLVGPVNISTRASLISAGVVA 2301

Query: 297  QGTLSITSTELYFEVDEDCPDFRNTDPE 324
             G +SITS ELYFEVDED P+F+  DPE
Sbjct: 2302 PGIVSITSAELYFEVDEDDPEFKKLDPE 2329

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855622|ref|XP_003703309.1| PREDICTED: neurobeachin-like [Megachile rotundata]

 Score =  350 bits (897), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 184/326 (56%), Positives = 212/326 (65%), Gaps = 68/326 (20%)

Query: 1    MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
            MLLCSQEWQ SLQKHAGLAFIELINEGRLLS                             
Sbjct: 2250 MLLCSQEWQNSLQKHAGLAFIELINEGRLLS----------------------------- 2280

Query: 61   AELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLIS 120
                 HAMKDHIVRVANEAEFILNRMRADDVLKHA+FES CAQTL +RR+EER+CDHLI+
Sbjct: 2281 -----HAMKDHIVRVANEAEFILNRMRADDVLKHADFESQCAQTLLDRREEERMCDHLIT 2335

Query: 121  AARRRDQGTAGRILDKVSNILSNKHGAWAYNE--AARTQEFWKLDSWEDDARRRKRFVRN 178
            AARRRD   A R+L+KV NILSNKHGAW Y +  AA+  E+WKLD+WEDDARRRKRFV N
Sbjct: 2336 AARRRDNVIASRLLEKVRNILSNKHGAWGYMDPMAAKLAEYWKLDAWEDDARRRKRFVHN 2395

Query: 179  PRGTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSELI 238
            P G+SHP ATL+   +   PEDAI  A +EFHA +A                        
Sbjct: 2396 PLGSSHPEATLKAALEHGAPEDAILQAREEFHAHLA------------------------ 2431

Query: 239  EGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDIDLTGPVNISTRARLISPGVSAQG 298
                A  +   Q   A+    LMDDSEL+    D+D DLTGPVNIST+ +LI+PG+ A G
Sbjct: 2432 ----ASRAHQQQLQSAD----LMDDSELLSDDRDLDNDLTGPVNISTKGKLIAPGIVAPG 2483

Query: 299  TLSITSTELYFEVDEDCPDFRNTDPE 324
             +S+TSTELYFEVDED P+F+  D E
Sbjct: 2484 IISVTSTELYFEVDEDDPEFKKIDSE 2509

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025329|gb|EGI65497.1| Neurobeachin [Acromyrmex echinatior]

 Score =  350 bits (897), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 185/329 (56%), Positives = 218/329 (66%), Gaps = 68/329 (20%)

Query: 1    MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
            MLLCSQEWQ SLQKHAGLAFIELINEGRLLS                             
Sbjct: 2111 MLLCSQEWQNSLQKHAGLAFIELINEGRLLS----------------------------- 2141

Query: 61   AELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLIS 120
                 HAMKDHIVRVANEAEFILNRMRADDVLKHA+FES CAQTL +RR+EER+CDHLI+
Sbjct: 2142 -----HAMKDHIVRVANEAEFILNRMRADDVLKHADFESQCAQTLLDRREEERMCDHLIT 2196

Query: 121  AARRRDQGTAGRILDKVSNILSNKHGAWAYNE--AARTQEFWKLDSWEDDARRRKRFVRN 178
            AARRRD   A R+L+KV NILSNKHGAW Y +  AA+  E+WKLD+WEDDARRRKRFV N
Sbjct: 2197 AARRRDNVIASRLLEKVRNILSNKHGAWGYMDPMAAKLAEYWKLDAWEDDARRRKRFVHN 2256

Query: 179  PRGTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSELI 238
            P G+SHP ATL+   +   PEDAI  A +EFHA +A    +S+A+               
Sbjct: 2257 PLGSSHPEATLKAALEHGAPEDAILQAREEFHAHLA----ASRAH--------------- 2297

Query: 239  EGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDIDLTGPVNISTRARLISPGVSAQG 298
                    Q  Q+      ++L+DDSEL+    D+D DLTGPVNIST+ +LI+PG+ A G
Sbjct: 2298 -------QQQLQS------ADLLDDSELLTDDRDLDNDLTGPVNISTKGKLIAPGIVAPG 2344

Query: 299  TLSITSTELYFEVDEDCPDFRNTDPERSV 327
             +S+TSTELYFEVDED P+F+  D E  V
Sbjct: 2345 IISVTSTELYFEVDEDDPEFKKIDSENIV 2373

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020287|ref|XP_003694021.1| PREDICTED: neurobeachin-like [Apis florea]

 Score =  350 bits (897), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 184/326 (56%), Positives = 212/326 (65%), Gaps = 68/326 (20%)

Query: 1    MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
            MLLCSQEWQ SLQKHAGLAFIELINEGRLLS                             
Sbjct: 1974 MLLCSQEWQNSLQKHAGLAFIELINEGRLLS----------------------------- 2004

Query: 61   AELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLIS 120
                 HAMKDHIVRVANEAEFILNRMRADDVLKHA+FES CAQTL +RR+EER+CDHLI+
Sbjct: 2005 -----HAMKDHIVRVANEAEFILNRMRADDVLKHADFESQCAQTLLDRREEERMCDHLIT 2059

Query: 121  AARRRDQGTAGRILDKVSNILSNKHGAWAYNE--AARTQEFWKLDSWEDDARRRKRFVRN 178
            AARRRD   A R+L+KV NILSNKHGAW Y +  AA+  E+WKLD+WEDDARRRKRFV N
Sbjct: 2060 AARRRDNVIASRLLEKVRNILSNKHGAWGYMDPMAAKLAEYWKLDAWEDDARRRKRFVHN 2119

Query: 179  PRGTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSELI 238
            P G+SHP ATL+   +   PEDAI  A +EFHA +A                        
Sbjct: 2120 PLGSSHPEATLKAALEHGAPEDAILQAREEFHAHLA------------------------ 2155

Query: 239  EGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDIDLTGPVNISTRARLISPGVSAQG 298
                A  +   Q   A+    LMDDSEL+    D+D DLTGPVNIST+ +LI+PG+ A G
Sbjct: 2156 ----ASRAHQQQLQSAD----LMDDSELLSDDRDLDNDLTGPVNISTKGKLIAPGIVAPG 2207

Query: 299  TLSITSTELYFEVDEDCPDFRNTDPE 324
             +S+TSTELYFEVDED P+F+  D E
Sbjct: 2208 IISVTSTELYFEVDEDDPEFKKIDSE 2233

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788933|ref|XP_003251209.1| PREDICTED: neurobeachin-like, partial [Apis mellifera]

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 184/326 (56%), Positives = 212/326 (65%), Gaps = 68/326 (20%)

Query: 1    MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
            MLLCSQEWQ SLQKHAGLAFIELINEGRLLS                             
Sbjct: 1926 MLLCSQEWQNSLQKHAGLAFIELINEGRLLS----------------------------- 1956

Query: 61   AELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLIS 120
                 HAMKDHIVRVANEAEFILNRMRADDVLKHA+FES CAQTL +RR+EER+CDHLI+
Sbjct: 1957 -----HAMKDHIVRVANEAEFILNRMRADDVLKHADFESQCAQTLLDRREEERMCDHLIT 2011

Query: 121  AARRRDQGTAGRILDKVSNILSNKHGAWAYNE--AARTQEFWKLDSWEDDARRRKRFVRN 178
            AARRRD   A R+L+KV NILSNKHGAW Y +  AA+  E+WKLD+WEDDARRRKRFV N
Sbjct: 2012 AARRRDNVIASRLLEKVRNILSNKHGAWGYMDPMAAKLAEYWKLDAWEDDARRRKRFVHN 2071

Query: 179  PRGTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSELI 238
            P G+SHP ATL+   +   PEDAI  A +EFHA +A                        
Sbjct: 2072 PLGSSHPEATLKAALEHGAPEDAILQAREEFHAHLA------------------------ 2107

Query: 239  EGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDIDLTGPVNISTRARLISPGVSAQG 298
                A  +   Q   A+    LMDDSEL+    D+D DLTGPVNIST+ +LI+PG+ A G
Sbjct: 2108 ----ASRAHQQQLQSAD----LMDDSELLSDDRDLDNDLTGPVNISTKGKLIAPGIVAPG 2159

Query: 299  TLSITSTELYFEVDEDCPDFRNTDPE 324
             +S+TSTELYFEVDED P+F+  D E
Sbjct: 2160 IISVTSTELYFEVDEDDPEFKKIDSE 2185

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417191|ref|XP_003491301.1| PREDICTED: neurobeachin-like [Bombus impatiens]

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 183/326 (56%), Positives = 211/326 (64%), Gaps = 68/326 (20%)

Query: 1    MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
            MLLCSQEWQ SLQKHAGLAFIELINEGRLLS                             
Sbjct: 2195 MLLCSQEWQNSLQKHAGLAFIELINEGRLLS----------------------------- 2225

Query: 61   AELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLIS 120
                 HAMKDHIVRVANEAEFILNRMRADDVLKHA+FES CAQTL +RR+EER+CDHLI+
Sbjct: 2226 -----HAMKDHIVRVANEAEFILNRMRADDVLKHADFESQCAQTLLDRREEERMCDHLIT 2280

Query: 121  AARRRDQGTAGRILDKVSNILSNKHGAWAYNE--AARTQEFWKLDSWEDDARRRKRFVRN 178
            AARRRD   A R+L+KV NILSNKHGAW Y +  AA+  E+WKLD+WEDDARRRKRFV N
Sbjct: 2281 AARRRDNVIASRLLEKVRNILSNKHGAWGYMDPMAAKLAEYWKLDAWEDDARRRKRFVHN 2340

Query: 179  PRGTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSELI 238
            P G+SHP ATL+   +   PEDAI  A +EFHA +A                        
Sbjct: 2341 PLGSSHPEATLKAALEHGAPEDAILQAREEFHAHLA------------------------ 2376

Query: 239  EGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDIDLTGPVNISTRARLISPGVSAQG 298
                A  +   Q   A    +LMDDSEL+    D+D DLTGPVNIST+ +LI+PG+ A G
Sbjct: 2377 ----ASRAHQQQLQSA----DLMDDSELLSDDRDLDNDLTGPVNISTKGKLIAPGIVAPG 2428

Query: 299  TLSITSTELYFEVDEDCPDFRNTDPE 324
             +S+TS ELYFEVDED P+F+  D E
Sbjct: 2429 IISVTSAELYFEVDEDDPEFKKIDSE 2454

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322794630|gb|EFZ17638.1| hypothetical protein SINV_14055 [Solenopsis invicta]

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 182/326 (55%), Positives = 213/326 (65%), Gaps = 68/326 (20%)

Query: 1    MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
            MLLCSQEWQ SLQKHAGLAFIELINEGRLLS                             
Sbjct: 2070 MLLCSQEWQNSLQKHAGLAFIELINEGRLLS----------------------------- 2100

Query: 61   AELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLIS 120
                 HAMKDHIVRVANEAEFILNRMRADDVLKHA+FES CAQTL +RR+EER+CDHLI+
Sbjct: 2101 -----HAMKDHIVRVANEAEFILNRMRADDVLKHADFESQCAQTLLDRREEERMCDHLIT 2155

Query: 121  AARRRDQGTAGRILDKVSNILSNKHGAWAYNE--AARTQEFWKLDSWEDDARRRKRFVRN 178
            AARRRD   A R+L+KV NILSNKHGAW Y +  AA+  E+WKLD+WEDDARRRKRFV N
Sbjct: 2156 AARRRDNVIASRLLEKVRNILSNKHGAWGYMDPMAAKLAEYWKLDAWEDDARRRKRFVHN 2215

Query: 179  PRGTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSELI 238
            P G+ HP ATL+   +   PEDAI  A +EFHA +A  S++ Q    +T           
Sbjct: 2216 PLGSGHPEATLKAALEHGAPEDAILQAREEFHAHLA-ASRAHQQQLQST----------- 2263

Query: 239  EGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDIDLTGPVNISTRARLISPGVSAQG 298
                                +L+DDSEL+    D+D DLTGPVNIST+ +LI+PG+ A G
Sbjct: 2264 --------------------DLLDDSELLSDDRDLDNDLTGPVNISTKGKLIAPGIVAPG 2303

Query: 299  TLSITSTELYFEVDEDCPDFRNTDPE 324
             +S+TSTELYFEVDED P+F+  D E
Sbjct: 2304 IISVTSTELYFEVDEDDPEFKKIDSE 2329

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715018|ref|XP_003396018.1| PREDICTED: neurobeachin-like [Bombus terrestris]

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 183/326 (56%), Positives = 211/326 (64%), Gaps = 68/326 (20%)

Query: 1    MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
            MLLCSQEWQ SLQKHAGLAFIELINEGRLLS                             
Sbjct: 2195 MLLCSQEWQNSLQKHAGLAFIELINEGRLLS----------------------------- 2225

Query: 61   AELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLIS 120
                 HAMKDHIVRVANEAEFILNRMRADDVLKHA+FES CAQTL +RR+EER+CDHLI+
Sbjct: 2226 -----HAMKDHIVRVANEAEFILNRMRADDVLKHADFESQCAQTLLDRREEERMCDHLIT 2280

Query: 121  AARRRDQGTAGRILDKVSNILSNKHGAWAYNE--AARTQEFWKLDSWEDDARRRKRFVRN 178
            AARRRD   A R+L+KV NILSNKHGAW Y +  AA+  E+WKLD+WEDDARRRKRFV N
Sbjct: 2281 AARRRDNVIASRLLEKVRNILSNKHGAWGYMDPMAAKLAEYWKLDAWEDDARRRKRFVHN 2340

Query: 179  PRGTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSELI 238
            P G+SHP ATL+   +   PEDAI  A +EFHA +A                        
Sbjct: 2341 PLGSSHPEATLKAALEHGAPEDAILQAREEFHAHLA------------------------ 2376

Query: 239  EGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDIDLTGPVNISTRARLISPGVSAQG 298
                A  +   Q   A+    LMDDSEL+    D+D DLTGPVNIST+ +LI+PG+ A G
Sbjct: 2377 ----ASRAHQQQLQSAD----LMDDSELLSDDRDLDNDLTGPVNISTKGKLIAPGIVAPG 2428

Query: 299  TLSITSTELYFEVDEDCPDFRNTDPE 324
             +S+TS ELYFEVDED P+F+  D E
Sbjct: 2429 IISVTSAELYFEVDEDDPEFKKIDSE 2454

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005522|gb|EFA01970.1| hypothetical protein TcasGA2_TC007591 [Tribolium castaneum]

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 188/352 (53%), Positives = 219/352 (62%), Gaps = 76/352 (21%)

Query: 1    MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
            MLLCSQEWQ SLQKHAGLAFIELINEGRLLS                             
Sbjct: 2078 MLLCSQEWQNSLQKHAGLAFIELINEGRLLS----------------------------- 2108

Query: 61   AELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLIS 120
                 HAMKDHIVRVANEAEFILNRMRADDVLKHA+FES CAQTL ER++EER+CDHLI+
Sbjct: 2109 -----HAMKDHIVRVANEAEFILNRMRADDVLKHADFESQCAQTLMERKEEERMCDHLIT 2163

Query: 121  AARRRDQGTAGRILDKVSNILSNKHGAWAYNE--AARTQEFWKLDSWEDDARRRKRFVRN 178
            AARRRD   A R+L+K+ NILSNKHGAW Y +  AA+  EFWKLD+WEDDARRRKRFV N
Sbjct: 2164 AARRRDNVIASRLLEKIRNILSNKHGAWGYMDPAAAKLSEFWKLDAWEDDARRRKRFVHN 2223

Query: 179  PRGTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSELI 238
            P GT+HP A+L+   +   PEDAI  A +EFHA +A                        
Sbjct: 2224 PLGTTHPEASLKAAIEHGAPEDAILQAREEFHAHLAATRN-------------------- 2263

Query: 239  EGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDIDLTGPVNISTRARLISPGVSAQG 298
                    Q  Q N      +LMDDSEL+    ++D DLTGPVNIST+A+LI+PGV A G
Sbjct: 2264 -------QQPIQPN------DLMDDSELLTDDRELDNDLTGPVNISTKAKLIAPGVVAPG 2310

Query: 299  TLSITSTELYFEVDEDCPDFRNTDPERSVISGVVVSRTPDLEFGGPVNISTR 350
             +SITSTELYFEVDE+  +F+  D E       V      ++   PVN  T+
Sbjct: 2311 MVSITSTELYFEVDEEDVEFKKIDTE-------VYKSMTIIKLVVPVNYDTK 2355

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	388
FB|FBgn0086911	3578	rg "rugose" [Drosophila melano	0.463	0.050	0.575	4.6e-71
MGI|MGI:1933162	2856	Lrba "LPS-responsive beige-lik	0.391	0.053	0.539	3.7e-57
UNIPROTKB|F1RSR3	378	NBEA "Uncharacterized protein"	0.347	0.357	0.592	1.3e-55
UNIPROTKB|F1P3D0	2855	NBEA "Neurobeachin" [Gallus ga	0.378	0.051	0.571	1.8e-55
UNIPROTKB|E1C6E6	2850	LRBA "Uncharacterized protein"	0.391	0.053	0.539	3.7e-55
UNIPROTKB|P50851	2863	LRBA "Lipopolysaccharide-respo	0.363	0.049	0.570	3.8e-55
UNIPROTKB|F1MF64	2809	NBEA "Uncharacterized protein"	0.378	0.052	0.571	1.5e-54
UNIPROTKB|E1BND6	2786	Bt.111067 "Uncharacterized pro	0.502	0.069	0.452	5e-54
MGI|MGI:1347075	2936	Nbea "neurobeachin" [Mus muscu	0.378	0.050	0.571	5.7e-54
UNIPROTKB|Q8NFP9	2946	NBEA "Neurobeachin" [Homo sapi	0.378	0.049	0.571	1.2e-53

FB|FBgn0086911 rg "rugose" [Drosophila melanogaster (taxid:7227)]

 Score = 554 (200.1 bits), Expect = 4.6e-71, Sum P(2) = 4.6e-71
 Identities = 111/193 (57%), Positives = 135/193 (69%)

Query:    56 DVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLC 115
             +++    LLSHAMKDHIVRVANEAEFILNRMRADDVLKHA+FES CAQTL ERR+EER+C
Sbjct:  2580 ELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKHADFESQCAQTLLERREEERMC 2639

Query:   116 DHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNE----------AARTQEFWKLDSW 165
             DHLI+AARRRD   A R+L+KV NI+ N+HGAW  +           A +   +WKLD+W
Sbjct:  2640 DHLITAARRRDNVIASRLLEKVRNIMCNRHGAWGDSSSTSSGGAIVGAVQKSPYWKLDAW 2699

Query:   166 EDDARRRKRFVRNPRGTSHPNATLEKVAQKEVPEDAIAHANQEFHXXXXXXXXXXXXNGA 225
             EDDARRRKR V+NPRG+SHP ATL+   +   PEDAI     EFH            +G 
Sbjct:  2700 EDDARRRKRMVQNPRGSSHPQATLKAALENGGPEDAILQTRDEFHTQIAVSRTHP--SGQ 2757

Query:   226 NTCSELMDDSELI 238
             +   EL+DD+EL+
Sbjct:  2758 HN-GELLDDAELL 2769

GO:0016021 "integral to membrane" evidence=IDA

GO:0008104 "protein localization" evidence=NAS;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0051018 "protein kinase A binding" evidence=NAS;IDA

GO:0042675 "compound eye cone cell differentiation" evidence=IMP

GO:0007528 "neuromuscular junction development" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

GO:0043025 "neuronal cell body" evidence=IDA

GO:0016319 "mushroom body development" evidence=IMP

MGI|MGI:1933162 Lrba "LPS-responsive beige-like anchor" [Mus musculus (taxid:10090)]

 Score = 463 (168.0 bits), Expect = 3.7e-57, Sum P(2) = 3.7e-57
 Identities = 82/152 (53%), Positives = 113/152 (74%)

Query:    56 DVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLC 115
             +++    LLS  MKDH+VRVANEAEFIL+R RA+D+ +HAEFES CAQ   ++R+EE++C
Sbjct:  1880 ELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRHAEFESLCAQYSADKREEEKMC 1939

Query:   116 DHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRF 175
             DHLI AA+ RD  TA +++ K+ N+L++KHGAW  +  +R +EFW+LD WEDD RRR+RF
Sbjct:  1940 DHLIRAAKYRDHVTATQLIQKIINLLTDKHGAWGSSAVSRPREFWRLDYWEDDLRRRRRF 1999

Query:   176 VRNPRGTSHPNATLEKVAQKEVPEDAIAHANQ 207
             VRNP G++HP ATL+   +    ED +A   Q
Sbjct:  2000 VRNPLGSTHPEATLKTAVEHAADEDILAKGKQ 2031

GO:0005764 "lysosome" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007165 "signal transduction" evidence=TAS

GO:0008104 "protein localization" evidence=ISA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0016197 "endosomal transport" evidence=TAS

GO:0051018 "protein kinase A binding" evidence=ISA

UNIPROTKB|F1RSR3 NBEA "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 432 (157.1 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
 Identities = 80/135 (59%), Positives = 100/135 (74%)

Query:    68 MKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLISAARRRDQ 127
             MKDHIVRVANEAEFILNR RA+DV KHAEFES CAQ   +RR+EE++CDHLISAA+ RD 
Sbjct:     1 MKDHIVRVANEAEFILNRQRAEDVHKHAEFESQCAQYAADRREEEKMCDHLISAAKHRDH 60

Query:   128 GTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRFVRNPRGTSHPNA 187
              TA ++  K+ NIL+NKHGAW     ++  +FW+LD WEDD RRR+RFVRN  G++H  A
Sbjct:    61 VTANQLKQKILNILTNKHGAWGAVSHSQLHDFWRLDYWEDDLRRRRRFVRNAFGSTHAEA 120

Query:   188 TLEKVAQKEVPEDAI 202
              L+   +    ED +
Sbjct:   121 LLKAAIEYGTEEDVV 135

GO:0019901 "protein kinase binding" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

UNIPROTKB|F1P3D0 NBEA "Neurobeachin" [Gallus gallus (taxid:9031)]

 Score = 458 (166.3 bits), Expect = 1.8e-55, Sum P(2) = 1.8e-55
 Identities = 84/147 (57%), Positives = 108/147 (73%)

Query:    56 DVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLC 115
             +++    LL HAMKDHIVRVANEAEFILNR RA+DV KHAEFES CAQ   +RR+EE++C
Sbjct:  1867 ELINEGRLLCHAMKDHIVRVANEAEFILNRQRAEDVHKHAEFESQCAQYAADRREEEKMC 1926

Query:   116 DHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRF 175
             DHLISAA+ RD  TA ++  K+ NIL+NKHGAW     ++  +FW+LD WEDD RRR+RF
Sbjct:  1927 DHLISAAKHRDHVTANQLKQKILNILTNKHGAWGAVSHSQLHDFWRLDYWEDDLRRRRRF 1986

Query:   176 VRNPRGTSHPNATLEKVAQKEVPEDAI 202
             VRN  G++H +A L+   +    ED +
Sbjct:  1987 VRNAFGSTHADALLKAAVEYGTEEDVV 2013

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

UNIPROTKB|E1C6E6 LRBA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 456 (165.6 bits), Expect = 3.7e-55, Sum P(2) = 3.7e-55
 Identities = 82/152 (53%), Positives = 113/152 (74%)

Query:    56 DVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLC 115
             +++    LLS  MKDH+VRVANEAEFIL+R RA+D+ +HAEFES CAQ   ++R+EE++C
Sbjct:  1867 ELVNEGRLLSQNMKDHLVRVANEAEFILSRQRAEDINRHAEFESLCAQYSADKREEEKMC 1926

Query:   116 DHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRF 175
              HLI+AA+ RDQ TA +++ K+ NIL++KHGAW  +  +R +EFW+LD WEDD RRR+RF
Sbjct:  1927 HHLITAAKYRDQVTATQLIQKIVNILTDKHGAWGSSAPSRPREFWRLDYWEDDLRRRRRF 1986

Query:   176 VRNPRGTSHPNATLEKVAQKEVPEDAIAHANQ 207
             VRNP G++HP ATL+   +    ED +    Q
Sbjct:  1987 VRNPLGSTHPEATLKAAGEHAPDEDILVKGKQ 2018

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

UNIPROTKB|P50851 LRBA "Lipopolysaccharide-responsive and beige-like anchor protein" [Homo sapiens (taxid:9606)]

 Score = 443 (161.0 bits), Expect = 3.8e-55, Sum P(2) = 3.8e-55
 Identities = 81/142 (57%), Positives = 109/142 (76%)

Query:    56 DVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLC 115
             +++    LLS  MKDH+VRVANEAEFIL+R RA+D+ +HAEFES CAQ   ++R++E++C
Sbjct:  1876 ELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRHAEFESLCAQYSADKREDEKMC 1935

Query:   116 DHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRF 175
             DHLI AA+ RD  TA +++ K+ NIL++KHGAW  +  +R  EFW+LD WEDD RRR+RF
Sbjct:  1936 DHLIRAAKYRDHVTATQLIQKIINILTDKHGAWGNSAVSRPLEFWRLDYWEDDLRRRRRF 1995

Query:   176 VRNPRGTSHPNATLEKVAQKEV 197
             VRNP G++HP ATL K A + V
Sbjct:  1996 VRNPLGSTHPEATL-KTAVEHV 2016

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1MF64 NBEA "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 456 (165.6 bits), Expect = 1.5e-54, Sum P(2) = 1.5e-54
 Identities = 84/147 (57%), Positives = 107/147 (72%)

Query:    56 DVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLC 115
             +++    LL HAMKDHIVRVANEAEFILNR RA+DV KHAEFES CAQ   +RR+EE++C
Sbjct:  1825 ELINEGRLLCHAMKDHIVRVANEAEFILNRQRAEDVHKHAEFESQCAQYAADRREEEKMC 1884

Query:   116 DHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRF 175
             DHLISAA+ RD  TA ++  K+ NIL+NKHGAW     ++  +FW+LD WEDD RRR+RF
Sbjct:  1885 DHLISAAKHRDHVTANQLKQKILNILTNKHGAWGAVSHSQLHDFWRLDYWEDDLRRRRRF 1944

Query:   176 VRNPRGTSHPNATLEKVAQKEVPEDAI 202
             VRN  G++H  A L+   +    ED +
Sbjct:  1945 VRNAFGSTHAEALLKAAIEYGTEEDVV 1971

GO:0019901 "protein kinase binding" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

UNIPROTKB|E1BND6 Bt.111067 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 454 (164.9 bits), Expect = 5.0e-54, Sum P(2) = 5.0e-54
 Identities = 91/201 (45%), Positives = 126/201 (62%)

Query:    56 DVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESH--CAQTLQERRDEER 113
             +++    LLS  MKDH+VRVANEAEFIL+R RA+D+ +HAEFES   CAQ   ++R++E+
Sbjct:  1807 ELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRHAEFESKSLCAQYSADKREDEK 1866

Query:   114 LCDHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRK 173
             +CDHLI AA+ RD  TA +++ K+ NIL++KHGAW  +  +R +EFW+LD WEDD RRR+
Sbjct:  1867 MCDHLIRAAKYRDHVTATQLIQKIINILTDKHGAWGNSAVSRPREFWRLDYWEDDLRRRR 1926

Query:   174 RFVRNPRGTSHPNATLEKVAQKEVPEDAIAHANQEFHXXXXXXXXX---XXXNGANTCSE 230
             RFVRNP G++HP ATL+   +    ED +A   Q                   G +    
Sbjct:  1927 RFVRNPLGSTHPEATLKTAVEHAADEDILAKGKQSIKSQALGNQNSENETLLEGDDDTLS 1986

Query:   231 LMDDSELIEGEVAVVSQSSQA 251
              MD+ +L E     VS S+ A
Sbjct:  1987 SMDEKDL-ENLTGPVSLSTPA 2006

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

MGI|MGI:1347075 Nbea "neurobeachin" [Mus musculus (taxid:10090)]

 Score = 458 (166.3 bits), Expect = 5.7e-54, Sum P(2) = 5.7e-54
 Identities = 84/147 (57%), Positives = 107/147 (72%)

Query:    56 DVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLC 115
             +++    LL HAMKDHIVRVANEAEFILNR RA+DV KHAEFES CAQ   +RR+EE++C
Sbjct:  1952 ELINEGRLLCHAMKDHIVRVANEAEFILNRQRAEDVHKHAEFESQCAQYAADRREEEKMC 2011

Query:   116 DHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRF 175
             DHLISAA+ RD  TA ++  K+ NIL+NKHGAW     ++  +FW+LD WEDD RRR+RF
Sbjct:  2012 DHLISAAKHRDHVTANQLKQKILNILTNKHGAWGAVSHSQLHDFWRLDYWEDDLRRRRRF 2071

Query:   176 VRNPRGTSHPNATLEKVAQKEVPEDAI 202
             VRN  G++H  A L+   +    ED +
Sbjct:  2072 VRNAFGSTHAEALLKSAVEYGTEEDVV 2098

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006605 "protein targeting" evidence=ISS

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=NAS

GO:0008104 "protein localization" evidence=IDA

GO:0012505 "endomembrane system" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=NAS

GO:0051018 "protein kinase A binding" evidence=NAS

UNIPROTKB|Q8NFP9 NBEA "Neurobeachin" [Homo sapiens (taxid:9606)]

 Score = 456 (165.6 bits), Expect = 1.2e-53, Sum P(2) = 1.2e-53
 Identities = 84/147 (57%), Positives = 107/147 (72%)

Query:    56 DVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLC 115
             +++    LL HAMKDHIVRVANEAEFILNR RA+DV KHAEFES CAQ   +RR+EE++C
Sbjct:  1962 ELINEGRLLCHAMKDHIVRVANEAEFILNRQRAEDVHKHAEFESQCAQYAADRREEEKMC 2021

Query:   116 DHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRF 175
             DHLISAA+ RD  TA ++  K+ NIL+NKHGAW     ++  +FW+LD WEDD RRR+RF
Sbjct:  2022 DHLISAAKHRDHVTANQLKQKILNILTNKHGAWGAVSHSQLHDFWRLDYWEDDLRRRRRF 2081

Query:   176 VRNPRGTSHPNATLEKVAQKEVPEDAI 202
             VRN  G++H  A L+   +    ED +
Sbjct:  2082 VRNAFGSTHAEALLKAAIEYGTEEDVV 2108

GO:0008104 "protein localization" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0012505 "endomembrane system" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9W4E2	NBEA_DROME	No assigned EC number	0.5476	0.6597	0.0715	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	388
pfam06469	169	pfam06469, DUF1088, Domain of Unknown Function (DU	4e-75
cd01201	113	cd01201, PH_BEACH, Pleckstrin homology domain in B	4e-08
cd01201	113	cd01201, PH_BEACH, Pleckstrin homology domain in B	4e-08

>gnl|CDD|219043 pfam06469, DUF1088, Domain of Unknown Function (DUF1088)

 Score =  230 bits (588), Expect = 4e-75
 Identities = 95/174 (54%), Positives = 127/174 (72%), Gaps = 8/174 (4%)

Query: 63  LLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLISAA 122
           LLSHAMKDHIVRVANEAEFILNR RA+DV KHAEFES CAQ L +RR+EE++CDHLI AA
Sbjct: 4   LLSHAMKDHIVRVANEAEFILNRQRAEDVHKHAEFESQCAQYLADRREEEKMCDHLIRAA 63

Query: 123 RRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRFVRNPRGT 182
           + RD  TA ++L K+ NIL++KHGAW  + +++  EFW+LD WEDD RRR+RFVRNP G+
Sbjct: 64  KYRDHVTATQLLQKIVNILTDKHGAWGDSSSSQPHEFWRLDYWEDDLRRRRRFVRNPFGS 123

Query: 183 SHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSE 236
           +HP ATL+   +    E+ +  + +   +Q A VSQ+ +       +EL+ + +
Sbjct: 124 THPEATLKAAEENGSEEERVVKSKKGIRSQ-AHVSQNGE-------TELVLEGD 169

This family is found in the neurobeachins. The function of this region is not known. Length = 169

>gnl|CDD|241237 cd01201, PH_BEACH, Pleckstrin homology domain in BEACH domain containing proteins

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 279 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTD 322
             + +ST   L++P     GTL IT+T LYF  DED  +     
Sbjct: 1   EKILLSTNCSLVTPLDVIPGTLLITTTHLYFVDDEDDSEDGKIV 44

The BEACH domain is present in several eukaroyotic proteins CHS, neurobeachin (Nbea), LRBA (also called BGL, beige-like, or CDC4L), FAN, KIAA1607, and LvsA-LvsF. CHS is a rare, autosomal recessive disorder that can cause severe immunodeficiency and albinism in mammals and beige is the name for the CHS disease in mice. The CHS disease is associated with the presence of giant, perinuclear vesicles (lysosomes, melanosomes, and others) and CHS protein is thought to play an important role in the fusion, fission, or trafficking of these vesicles. All BEACH proteins contain the following domains: PH, BEACH, and WD40. The WD40 domain is involved in mediating protein-protein interactions involved in targeting proteins to subcellular compartments. The combined PH-BEACH motifs may present a single continuous structural unit involved in protein binding. Some members have an additional N-terminal Laminin G-like (LamG) domains Ca++ mediated receptors or an additional C-terminal FYVE zinc-binding domain which targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 113

>gnl|CDD|241237 cd01201, PH_BEACH, Pleckstrin homology domain in BEACH domain containing proteins

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 343 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTD 386
             + +ST   L++P     GTL IT+T LYF  DED  +     
Sbjct: 1   EKILLSTNCSLVTPLDVIPGTLLITTTHLYFVDDEDDSEDGKIV 44

The BEACH domain is present in several eukaroyotic proteins CHS, neurobeachin (Nbea), LRBA (also called BGL, beige-like, or CDC4L), FAN, KIAA1607, and LvsA-LvsF. CHS is a rare, autosomal recessive disorder that can cause severe immunodeficiency and albinism in mammals and beige is the name for the CHS disease in mice. The CHS disease is associated with the presence of giant, perinuclear vesicles (lysosomes, melanosomes, and others) and CHS protein is thought to play an important role in the fusion, fission, or trafficking of these vesicles. All BEACH proteins contain the following domains: PH, BEACH, and WD40. The WD40 domain is involved in mediating protein-protein interactions involved in targeting proteins to subcellular compartments. The combined PH-BEACH motifs may present a single continuous structural unit involved in protein binding. Some members have an additional N-terminal Laminin G-like (LamG) domains Ca++ mediated receptors or an additional C-terminal FYVE zinc-binding domain which targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	388
PF06469	169	DUF1088: Domain of Unknown Function (DUF1088); Int	100.0
KOG1787|consensus	1126		100.0
PF06469	169	DUF1088: Domain of Unknown Function (DUF1088); Int	99.62
cd01201	108	Neurobeachin Neurobeachin Pleckstrin homology-like	99.23
cd01201	108	Neurobeachin Neurobeachin Pleckstrin homology-like	98.9
KOG1787|consensus	1126		98.07
PF14844	106	PH_BEACH: PH domain associated with Beige/BEACH; P	96.4
PF14844	106	PH_BEACH: PH domain associated with Beige/BEACH; P	91.83

>PF06469 DUF1088: Domain of Unknown Function (DUF1088); InterPro: IPR010508 This domain is found in the neurobeachins

Probab=100.00  E-value=3.4e-72  Score=504.76  Aligned_cols=161  Identities=63%  Similarity=1.025  Sum_probs=149.5

Q ss_pred             hhhhhhhhhhhhHHhhhhhhHHHHhhhhhHHHhhHHHHhhhhhhhhHHHhcchhhHHHhhhchhHHhhhhhhhHHHHHHh
Q psy17733         26 EGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTL  105 (388)
Q Consensus        26 EGrll~ha~rdhivRvaNEAe~~~~~~~a~el~~~~~l~~~~~~dh~~~~a~eaeFILNR~RAeDV~Kha~fe~~~a~~~  105 (388)
                      |||||||||||||||||||||                                  |||||||||||+|||+||++|||++
T Consensus         1 EGRLlsha~rDHivRVAnEAe----------------------------------fILnr~raedv~kha~FE~~~aq~~   46 (169)
T PF06469_consen    1 EGRLLSHAMRDHIVRVANEAE----------------------------------FILNRQRAEDVHKHAEFESLCAQTS   46 (169)
T ss_pred             CchhhhhHHHHHHHHHhHHHH----------------------------------HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            566666666666666666666                                  9999999999999999999999999


Q ss_pred             hhhHHHHHhhHHHHHHhhhhhhhhHHHHHHHHHHHhhcCCCCccchhhhhhhhhhccccchhhHHHhhhhcCCCCCCCCC
Q psy17733        106 QERRDEERLCDHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRFVRNPRGTSHP  185 (388)
Q Consensus       106 ~~~reEE~~Cd~LI~AaRrRD~~tAarl~dkv~~iLtn~~gaWg~~~~~~~~~fwKLD~WEDDsRRRrRfVrNp~Gs~Hp  185 (388)
                      ++++|||+||||||+|+|+||+++|.||++||+|||||++||||.+..+++++|||||+||||+|||+|||||||||+||
T Consensus        47 ~~~~eEe~~cdhli~AarrRD~~~a~~L~~Ki~~iLtn~~GaWg~~~~~~~~~fWkLD~WEDD~RRRrR~V~NP~GS~H~  126 (169)
T PF06469_consen   47 ADRREEERMCDHLIRAARRRDHVTASRLLRKILNILTNKHGAWGDSSSSRPSEFWKLDYWEDDSRRRRRFVPNPYGSTHP  126 (169)
T ss_pred             HhhHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCCCCccccCccceeeccccccchHHHHhcCCCCCCCcch
Confidence            99999999999999999999999999999999999999999999988889999999999999999999999999999999


Q ss_pred             ccchhhhhhcCCchHHHHhhhHhhhhhHhhhhccc
Q psy17733        186 NATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSS  220 (388)
Q Consensus       186 ~AtL~~~~~~~~~e~a~~~~~~~~~~~~~~~~~ss  220 (388)
                      +|||++..+++++++++.++++++++|++++++++
T Consensus       127 ~Atlk~~~e~~~~e~~~~~~~~~~~~q~~~~~~~~  161 (169)
T PF06469_consen  127 EATLKAAEEHGAEEDEVEKAKEEFRSQIAPSQNQE  161 (169)
T ss_pred             HhHHhhHHhccCchHHHHHHHHHHHHHhccccCCC
Confidence            99999999999999999999999999987766644

The function of this region is not known.

>KOG1787|consensus

Probab=100.00  E-value=1e-36  Score=332.64  Aligned_cols=267  Identities=19%  Similarity=0.192  Sum_probs=224.7

Q ss_pred             CccchHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhHHHHhhhhhHHHhhHHHHhhhhhhhhHHHhcchhh
Q psy17733          1 MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKHAELLSHAMKDHIVRVANEAE   80 (388)
Q Consensus         1 MlLcSQEWQ~slQK~AGlAFIELinEGrll~ha~rdhivRvaNEAe~~~~~~~a~el~~~~~l~~~~~~dh~~~~a~eae   80 (388)
                      |++|+|+||+++|||+|++||+++|||++++|.|++|++||+||+|                                  
T Consensus       113 ~~~~~~~~q~~~~~~~~~~~i~~v~e~~~~~~~~~~~~~~~~~~~e----------------------------------  158 (1126)
T KOG1787|consen  113 SELHLRDQQKFCQKHSAVACVPSVNEPFLSTNDGAVYALRSGLESE----------------------------------  158 (1126)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhcccccccccccceeeccccchhh----------------------------------
Confidence            7899999999999999999999999999999999999999999999                                  


Q ss_pred             HHHhhhchhHHhhhhhhhHHHHHHhhhhHHHHHhhHHHHHHhhhhhhhhHHHHHHHHHHHhhcCCCCccchhhh----hh
Q psy17733         81 FILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAA----RT  156 (388)
Q Consensus        81 FILNR~RAeDV~Kha~fe~~~a~~~~~~reEE~~Cd~LI~AaRrRD~~tAarl~dkv~~iLtn~~gaWg~~~~~----~~  156 (388)
                      ||+||.|++++++|+.|++.|+++++.+.+++.+|++++.++|.|+..++.++..++.+++++.+++|++....    +.
T Consensus       159 ~~~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~r~~~~v~~~~~~~~~~~~d~~~~w~~~~~~~~~s~~  238 (1126)
T KOG1787|consen  159 FSSSRASASSVSGGVMLDILALMALASGQISAEVAERLTAAARLRTYASVTQLFTKIGMLLTDLGAQWRDLSHSLSRSKK  238 (1126)
T ss_pred             hhhccchhhhccCCchhhhhhhhhhcccchhHHHHHHHHHHhhcccccchHHhhhhHHHHHHHHHHHHHhhccccccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987766    88


Q ss_pred             hhhhccccchhhHHHhhhhcCCCCCCCCCccchhhhhhcCCchHHHHhhhHhhhhhHhhhhcccccCCCCccccccchhh
Q psy17733        157 QEFWKLDSWEDDARRRKRFVRNPRGTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSE  236 (388)
Q Consensus       157 ~~fwKLD~WEDDsRRRrRfVrNp~Gs~Hp~AtL~~~~~~~~~e~a~~~~~~~~~~~~~~~~~ss~~~~a~~~~~~~~~~e  236 (388)
                      ..||++++|+|+.+|++++++|.+|..|+++.+.....+...-+...+.-..+              +.-+.+..+.+..
T Consensus       239 ~~f~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~t~~~~~~~~~  304 (1126)
T KOG1787|consen  239 ALFGEGENFSDIVSRLNENLRNANGLEHPEAKLNVGEKQLLLLDEGGKLTIGI--------------GSQTGKSLLSQAT  304 (1126)
T ss_pred             hhccCccchHHHHHhhhhccccccccchhhhhhhhhhhhcccccccccccccc--------------ccccccchhhhhh
Confidence            89999999999999999999999999999999976655543222111111111              1112222222222


Q ss_pred             hhhhhhhhhhccccCCCCCccCccCCchhhhc--CCCCCCccCCCCceeecccccccCcccccCcccccccccccccCCC
Q psy17733        237 LIEGEVAVVSQSSQANGANTCSELMDDSELIE--GGGDIDIDLTGPVNISTRARLISPGVSAQGTLSITSTELYFEVDED  314 (388)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~el~~dsd~~~--~~~e~d~d~~gpv~~ST~A~liAPGvva~GTLSITssELyFEvDEd  314 (388)
                      .++.           ++.+  .+++++.+.+.  ++++.++ ...+.++|++|.+++ +.|..|+++++.++.+|+++++
T Consensus       305 ~~~~-----------s~~~--~~~~~~~~~l~~~~ek~~~~-~~~~~~lss~~~~~~-~~~t~~~~~~~~~~s~~~~~es  369 (1126)
T KOG1787|consen  305 QNQN-----------SDQE--LLLLLRMDLLSLRQEKDIEN-SSLSEVLSSPANTIA-LEVTLGNLSSVDSESELSMRES  369 (1126)
T ss_pred             cCCC-----------ccch--hhhhhhhhhhhccccccccc-cccceeeeccCCccc-eeeeccceeeecchhhhhhhcC
Confidence            2211           1111  35566666666  5555554 689999999999999 9999999999999999999999


Q ss_pred             CCcccCCCCccccccc
Q psy17733        315 CPDFRNTDPERSVISG  330 (388)
Q Consensus       315 dp~f~k~Dp~vl~~~~  330 (388)
                      ++.++|.+.++++|..
T Consensus       370 ~~a~~~~~l~~l~~~~  385 (1126)
T KOG1787|consen  370 PSASKKSLLKPLAYLE  385 (1126)
T ss_pred             chHHHHHhhhHHhcCc
Confidence            9999999999999874

>PF06469 DUF1088: Domain of Unknown Function (DUF1088); InterPro: IPR010508 This domain is found in the neurobeachins

Probab=99.62  E-value=3.3e-16  Score=142.39  Aligned_cols=118  Identities=30%  Similarity=0.366  Sum_probs=98.7

Q ss_pred             HHHHhhhhhhhhHHHhcchhhHHHhhhchhHHhhhhhhhHHHHHHhhhhHHHHHhhHHHHHHhhhhhhh-----hHHHHH
Q psy17733         60 HAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLISAARRRDQG-----TAGRIL  134 (388)
Q Consensus        60 ~~~l~~~~~~dh~~~~a~eaeFILNR~RAeDV~Kha~fe~~~a~~~~~~reEE~~Cd~LI~AaRrRD~~-----tAarl~  134 (388)
                      |||||||+||||||||||         -||-|+.     -+.|+.+..|++||+.|.+.....|.++.+     +|++++
T Consensus         1 EGRLlsha~rDHivRVAn---------EAefILn-----r~raedv~kha~FE~~~aq~~~~~~eEe~~cdhli~AarrR   66 (169)
T PF06469_consen    1 EGRLLSHAMRDHIVRVAN---------EAEFILN-----RQRAEDVHKHAEFESLCAQTSADRREEERMCDHLIRAARRR   66 (169)
T ss_pred             CchhhhhHHHHHHHHHhH---------HHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Confidence            799999999999999999         9999998     568999999999999998777777777666     999999


Q ss_pred             HHHHHHhhcCCCCccchhhhhhhhhhccccchhhHHHhhh-----------hcCCCCCCCCCccchhhhhhcCCch
Q psy17733        135 DKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKR-----------FVRNPRGTSHPNATLEKVAQKEVPE  199 (388)
Q Consensus       135 dkv~~iLtn~~gaWg~~~~~~~~~fwKLD~WEDDsRRRrR-----------fVrNp~Gs~Hp~AtL~~~~~~~~~e  199 (388)
                      |.++        |-....+..++...++++|++.+.-+..           ..|..+++.+|.++.|+.+++.+..
T Consensus        67 D~~~--------a~~L~~Ki~~iLtn~~GaWg~~~~~~~~~fWkLD~WEDD~RRRrR~V~NP~GS~H~~Atlk~~~  134 (169)
T PF06469_consen   67 DHVT--------ASRLLRKILNILTNKHGAWGDSSSSRPSEFWKLDYWEDDSRRRRRFVPNPYGSTHPEATLKAAE  134 (169)
T ss_pred             hHHH--------HHHHHHHHHHHHcCCCCCCCCccccCccceeeccccccchHHHHhcCCCCCCCcchHhHHhhHH
Confidence            9998        4344456788999999999976533333           6788888999999998888877644

The function of this region is not known.

>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain

Probab=99.23  E-value=5.8e-12  Score=107.98  Aligned_cols=45  Identities=58%  Similarity=0.903  Sum_probs=43.7

Q ss_pred             CceeeccccccccceeeeccceeeeceeeEEeecCCCCcccCCCC
Q psy17733        343 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDP  387 (388)
Q Consensus       343 gpv~~st~a~liapgvv~~Gtlsit~~elyFevded~p~fkk~d~  387 (388)
                      ||+.+|++|+||+|++|+||+|+||+..|||++|+++|+|+++|+
T Consensus         1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~   45 (108)
T cd01201           1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDD   45 (108)
T ss_pred             CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCc
Confidence            799999999999999999999999999999999999999999886

Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.

>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain

Probab=98.90  E-value=4.2e-10  Score=96.63  Aligned_cols=51  Identities=53%  Similarity=0.784  Sum_probs=48.9

Q ss_pred             CCceeecccccccCcccccCcccccccccccccCCCCCcccCCCCcccccc
Q psy17733        279 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPERSVIS  329 (388)
Q Consensus       279 gpv~~ST~A~liAPGvva~GTLSITssELyFEvDEddp~f~k~Dp~vl~~~  329 (388)
                      ||+.+|++|.||.|++|.||+++||+..|||++|+++|+++++|++++.|.
T Consensus         1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~   51 (108)
T cd01201           1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYC   51 (108)
T ss_pred             CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceecc
Confidence            689999999999999999999999999999999999999999999999774

Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.

>KOG1787|consensus

Probab=98.07  E-value=1.2e-06  Score=98.31  Aligned_cols=53  Identities=17%  Similarity=0.106  Sum_probs=47.3

Q ss_pred             CCCCc-CCCCceeeccccccccceeeeccceeeeceeeEEeecCCCCcccCCCCC
Q psy17733        335 RTPDL-EFGGPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPE  388 (388)
Q Consensus       335 ~~~~~-~~~gpv~~st~a~liapgvv~~Gtlsit~~elyFevded~p~fkk~d~~  388 (388)
                      ++.+. +..++.++|+++++++ ++|.+||++++.++.||+++|+++.||+.+.+
T Consensus       326 ~ek~~~~~~~~~~lss~~~~~~-~~~t~~~~~~~~~~s~~~~~es~~a~~~~~l~  379 (1126)
T KOG1787|consen  326 QEKDIENSSLSEVLSSPANTIA-LEVTLGNLSSVDSESELSMRESPSASKKSLLK  379 (1126)
T ss_pred             ccccccccccceeeeccCCccc-eeeeccceeeecchhhhhhhcCchHHHHHhhh
Confidence            44444 5789999999999999 99999999999999999999999999998653

>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C

Probab=96.40  E-value=0.0018  Score=53.29  Aligned_cols=32  Identities=38%  Similarity=0.532  Sum_probs=28.4

Q ss_pred             eeeccccccccceeeeccceeeeceeeEEeec
Q psy17733        345 VNISTRARLISPGVSAQGTLSITSTELYFEVD  376 (388)
Q Consensus       345 v~~st~a~liapgvv~~Gtlsit~~elyFevd  376 (388)
                      |.+|++|+||.|-.+.||+|.||.+.+||..+
T Consensus         2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~   33 (106)
T PF14844_consen    2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPN   33 (106)
T ss_dssp             -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE-
T ss_pred             EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEEC
Confidence            67899999999999999999999999999988

>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C

Probab=91.83  E-value=0.043  Score=45.20  Aligned_cols=32  Identities=38%  Similarity=0.532  Sum_probs=28.1

Q ss_pred             ceeecccccccCcccccCcccccccccccccC
Q psy17733        281 VNISTRARLISPGVSAQGTLSITSTELYFEVD  312 (388)
Q Consensus       281 v~~ST~A~liAPGvva~GTLSITssELyFEvD  312 (388)
                      |.+|++|.+|.|-.+.+|+++||.+.+||..+
T Consensus         2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~   33 (106)
T PF14844_consen    2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPN   33 (106)
T ss_dssp             -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE-
T ss_pred             EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEEC
Confidence            67899999999999999999999999999977

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	388
1t77_A	414	Crystal Structure Of The Ph-Beach Domains Of Human		5e-11
1t77_A	414	Crystal Structure Of The Ph-Beach Domains Of Human		5e-11
1mi1_A	414	Crystal Structure Of The Ph-Beach Domain Of Human N		6e-09
1mi1_A	414	Crystal Structure Of The Ph-Beach Domain Of Human N		6e-09

>pdb|1T77|A Chain A, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL Length = 414

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 39/46 (84%)
Query: 279 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPE 324
           GPV++ST A+L++P V  +GTLS+TS+ELYFEVDE+ P+F+  DP+
Sbjct: 1   GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPK 46

>pdb|1T77|A Chain A, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL Length = 414

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 39/46 (84%)
Query: 343 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPE 388
           GPV++ST A+L++P V  +GTLS+TS+ELYFEVDE+ P+F+  DP+
Sbjct: 1   GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPK 46

>pdb|1MI1|A Chain A, Crystal Structure Of The Ph-Beach Domain Of Human Neurobeachin Length = 414

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 279 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTD 322
           GPV +ST A+LI+P V A+GTLSIT+TE+YFEVDED   F+  D
Sbjct: 1   GPVVLSTPAQLIAPVVVAKGTLSITTTEIYFEVDEDDSAFKKID 44

>pdb|1MI1|A Chain A, Crystal Structure Of The Ph-Beach Domain Of Human Neurobeachin Length = 414

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 343 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTD 386
           GPV +ST A+LI+P V A+GTLSIT+TE+YFEVDED   F+  D
Sbjct: 1   GPVVLSTPAQLIAPVVVAKGTLSITTTEIYFEVDEDDSAFKKID 44

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	388
1t77_A	414	Lipopolysaccharide-responsive and beige-like ancho	2e-07
1t77_A	414	Lipopolysaccharide-responsive and beige-like ancho	2e-07

>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A Length = 414

 Score = 51.7 bits (123), Expect = 2e-07
 Identities = 27/45 (60%), Positives = 38/45 (84%)

Query: 279 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDP 323
           GPV++ST A+L++P V  +GTLS+TS+ELYFEVDE+ P+F+  DP
Sbjct: 1   GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDP 45

>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A Length = 414

 Score = 51.7 bits (123), Expect = 2e-07
 Identities = 27/45 (60%), Positives = 38/45 (84%)

Query: 343 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDP 387
           GPV++ST A+L++P V  +GTLS+TS+ELYFEVDE+ P+F+  DP
Sbjct: 1   GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDP 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	388
1t77_A	414	Lipopolysaccharide-responsive and beige-like ancho	97.92

>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A

Probab=97.92  E-value=9.4e-07  Score=89.03  Aligned_cols=51  Identities=53%  Similarity=0.918  Sum_probs=48.5

Q ss_pred             CCceeecccccccCcccccCcccccccccccccCCCCCcccCCCCcccccc
Q psy17733        279 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPERSVIS  329 (388)
Q Consensus       279 gpv~~ST~A~liAPGvva~GTLSITssELyFEvDEddp~f~k~Dp~vl~~~  329 (388)
                      |||.+|++|++|.|.++.+|++.||.+.|||+.++++|.|++++++++.|.
T Consensus         1 g~v~~~~~~~~i~p~~~~~G~l~it~~~iyF~~~~~~~~~~~~~~~~~~~~   51 (414)
T 1t77_A            1 GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYT   51 (414)
T ss_dssp             CCCSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHC
T ss_pred             CCEEEEEEEEEEeeecceeeEEEEeCCEEEEEeCCCcccccccccchhccc
Confidence            799999999999999999999999999999999999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	388
d1t77a2	110	b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsi	2e-09
d1t77a2	110	b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsi	2e-09

>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: PreBEACH PH-like domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 27/45 (60%), Positives = 38/45 (84%)

Query: 279 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDP 323
           GPV++ST A+L++P V  +GTLS+TS+ELYFEVDE+ P+F+  DP
Sbjct: 1   GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDP 45

>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: PreBEACH PH-like domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 27/45 (60%), Positives = 38/45 (84%)

Query: 343 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDP 387
           GPV++ST A+L++P V  +GTLS+TS+ELYFEVDE+ P+F+  DP
Sbjct: 1   GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDP 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	388
d1t77a2	110	Lipopolysaccharide-responsive and beige-like ancho	98.73
d1t77a2	110	Lipopolysaccharide-responsive and beige-like ancho	98.12

>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: PreBEACH PH-like domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=8.1e-10  Score=90.65  Aligned_cols=44  Identities=59%  Similarity=1.025  Sum_probs=41.5

Q ss_pred             CceeeccccccccceeeeccceeeeceeeEEeecCCCCcccCCC
Q psy17733        343 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTD  386 (388)
Q Consensus       343 gpv~~st~a~liapgvv~~Gtlsit~~elyFevded~p~fkk~d  386 (388)
                      |||.+|++|+||.|..+.||+|.||++.|||+.||+++.+..++
T Consensus         1 gpv~~s~~c~lItp~~~~~G~l~It~~~iyF~~d~~~~~~~~~~   44 (110)
T d1t77a2           1 GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKID   44 (110)
T ss_dssp             CCCSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSC
T ss_pred             CCEEEEeeEEEEEecceEEEEEEEEccEEEEEecCCCcchhccc
Confidence            89999999999999999999999999999999999999876654

>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: PreBEACH PH-like domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=9.9e-08  Score=77.99  Aligned_cols=50  Identities=54%  Similarity=0.927  Sum_probs=46.4

Q ss_pred             CCceeecccccccCcccccCcccccccccccccCCCCCcccCCCCccccc
Q psy17733        279 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPERSVI  328 (388)
Q Consensus       279 gpv~~ST~A~liAPGvva~GTLSITssELyFEvDEddp~f~k~Dp~vl~~  328 (388)
                      |||.+|++|+||.|..+.+|++.||.+.|||+.|++++.+.+++++...+
T Consensus         1 gpv~~s~~c~lItp~~~~~G~l~It~~~iyF~~d~~~~~~~~~~~~~~~~   50 (110)
T d1t77a2           1 GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAY   50 (110)
T ss_dssp             CCCSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHH
T ss_pred             CCEEEEeeEEEEEecceEEEEEEEEccEEEEEecCCCcchhccccccccc
Confidence            79999999999999999999999999999999999999999888776643