Psyllid ID: psy17734
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 626 | 2.2.26 [Sep-21-2011] | |||||||
| O14744 | 637 | Protein arginine N-methyl | yes | N/A | 0.976 | 0.959 | 0.448 | 1e-152 | |
| Q4R5M3 | 637 | Protein arginine N-methyl | N/A | N/A | 0.976 | 0.959 | 0.447 | 1e-152 | |
| Q5R698 | 637 | Protein arginine N-methyl | yes | N/A | 0.974 | 0.957 | 0.449 | 1e-151 | |
| A7YW45 | 637 | Protein arginine N-methyl | yes | N/A | 0.976 | 0.959 | 0.445 | 1e-151 | |
| Q8CIG8 | 637 | Protein arginine N-methyl | yes | N/A | 0.976 | 0.959 | 0.448 | 1e-150 | |
| Q8GWT4 | 642 | Protein arginine N-methyl | yes | N/A | 0.921 | 0.898 | 0.406 | 1e-123 | |
| A2X0Q3 | 649 | Protein arginine N-methyl | N/A | N/A | 0.948 | 0.915 | 0.392 | 1e-123 | |
| Q6YXZ7 | 649 | Protein arginine N-methyl | yes | N/A | 0.948 | 0.915 | 0.392 | 1e-123 | |
| Q54KI3 | 642 | Protein arginine N-methyl | yes | N/A | 0.961 | 0.937 | 0.386 | 1e-113 | |
| Q9U6Y9 | 610 | Protein arginine N-methyl | yes | N/A | 0.824 | 0.845 | 0.408 | 1e-109 |
| >sp|O14744|ANM5_HUMAN Protein arginine N-methyltransferase 5 OS=Homo sapiens GN=PRMT5 PE=1 SV=4 | Back alignment and function desciption |
|---|
Score = 538 bits (1387), Expect = e-152, Method: Compositional matrix adjust.
Identities = 281/626 (44%), Positives = 398/626 (63%), Gaps = 15/626 (2%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLS 67
VS G + I + ++A + FD+ +P+ HPRF R + + P+ + L
Sbjct: 14 VSSGRDLNCVPEIADTLGAVAKQGFDFLCMPVFHPRFKREFIQEPAKNRPGPQTRSDLLL 73
Query: 68 SICPQWLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDF 127
S W LIV + ++ +SK + R +++ + QEL + YLG+P ++ L+Q D
Sbjct: 74 S-GRDWNTLIVGKLSPWIRP-DSKVEKIRRNSEAAMLQELNFGAYLGLPAFLLPLNQEDN 131
Query: 128 CNFARTLYAH-SEKNMSYTAWIKVPIRP--------VDTSMLRQQEEEPSSQDTWRWWNM 178
N AR L H + S W++VP+ ++ + EE + TW WW+
Sbjct: 132 TNLARVLTNHIHTGHHSSMFWMRVPLVAPEDLRDDIIENAPTTHTEEYSGEEKTWMWWHN 191
Query: 179 FRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLA 238
FR++ +Y + +ALEI D+ +H + RWLGEP++ +PT +F TNK G+PVL+
Sbjct: 192 FRTLCDYSKRIAVALEIGADLPSNHVIDRWLGEPIKAAILPTSIFLTNKKGFPVLSKMHQ 251
Query: 239 NFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFP 296
I ++L+ +Q +I G N H + + Y+QY++YL ++ + + A+ +EDYLQ P
Sbjct: 252 RLIFRLLKLEVQFIITGTNHHSEKEFCSYLQYLEYLSQNRPPPNAYELFAKGYEDYLQSP 311
Query: 297 LQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPL 356
LQPL ++L S TYEVFEKDPIKY +YQ+A+ + LLDRV E+ DT V +MV+GAGRGPL
Sbjct: 312 LQPLMDNLESQTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPL 371
Query: 357 VTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKAD 416
V ASL AAK+A+R++++YAVEKN +AVV L+ + E+W S VT+VS DMR W APEKAD
Sbjct: 372 VNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWG-SQVTVVSSDMREWVAPEKAD 430
Query: 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIK 476
I+VSELLGSF DNELSPECL AQ +LK+DG+SIP YTS++API S KL+ +V++ K
Sbjct: 431 IIVSELLGSFADNELSPECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNEVRACREK 490
Query: 477 EHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLH 536
+ + P +FE PYVV N + ++ PQPCFTF HP+ D DN+RY F E ++VLH
Sbjct: 491 D-RDPEAQFEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLH 549
Query: 537 GIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNV 596
G AGYF+T LY+DI LSI P+T SPG+ SWFP+LFPI +PI ++ I V FWR ++
Sbjct: 550 GFAGYFETVLYQDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNSK 609
Query: 597 KVWYEWLVTKPTPSPIYNLDGRSYKM 622
KVWYEW VT P S I+N GRSY +
Sbjct: 610 KVWYEWAVTAPVCSAIHNPTGRSYTI 635
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA. Specifically mediates the symmetrical dimethylation of arginine residues in the small nuclear ribonucleoproteins Sm D1 (SNRPD1) and Sm D3 (SNRPD3); such methylation being required for the assembly and biogenesis of snRNP core particles. Methylates SUPT5H. Mono- and dimethylates arginine residues of myelin basic protein (MBP) in vitro. Plays a role in the assembly of snRNP core particles. May play a role in cytokine-activated transduction pathways. Negatively regulates cyclin E1 promoter activity and cellular proliferation. May regulate the SUPT5H transcriptional elongation properties. May be part of a pathway that is connected to a chloride current, possibly through cytoskeletal rearrangement. Methylates histone H2A and H4 'Arg-3' during germ cell development. Methylates histone H3 'Arg-8', which may repress transcription. Methylates the Piwi proteins (PIWIL1, PIWIL2 and PIWIL4), methylation of Piwi proteins being required for the interaction with Tudor domain-containing proteins and subsequent localization to the meiotic nuage. Methylates RPS10. Attenuates EGF signaling through the MAPK1/MAPK3 pathway acting at 2 levels. First, monomethylates EGFR; this enhances EGFR 'Tyr-1197' phosphorylation and PTPN6 recruitment, eventually leading to reduced SOS1 phosphorylation. Second, methylates RAF1 and probably BRAF, hence destabilizing these 2 signaling proteins and reducing their catalytic activity. Required for induction of E-selectin and VCAM-1, on the endothelial cells surface at sites of inflammation. Methylates HOXA9. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2EC: 5 |
| >sp|Q4R5M3|ANM5_MACFA Protein arginine N-methyltransferase 5 OS=Macaca fascicularis GN=PRMT5 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 538 bits (1385), Expect = e-152, Method: Compositional matrix adjust.
Identities = 280/626 (44%), Positives = 397/626 (63%), Gaps = 15/626 (2%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLS 67
VS G + I + ++A + FD+ +P+ HPRF R + + P+ + L
Sbjct: 14 VSSGRDLNCVPEIADTLGAVAKQGFDFLCMPVFHPRFKRESIQEPAKNRPGPQTRSDLLL 73
Query: 68 SICPQWLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDF 127
S W LIV + ++ +SK + R +++ + QEL + YLG+P ++ L+Q D
Sbjct: 74 S-GRDWNTLIVGKLSPWIRP-DSKVEKIRRNSEAAMLQELNFGAYLGLPAFLLPLNQEDN 131
Query: 128 CNFARTLYAH-SEKNMSYTAWIKVPIRP--------VDTSMLRQQEEEPSSQDTWRWWNM 178
N AR L H + S W++VP+ ++ + EE + TW WW+
Sbjct: 132 TNLARVLTNHIHTGHHSSMFWMRVPLVAPEDLRDDIIENAPTTHTEEYSGEEKTWMWWHN 191
Query: 179 FRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLA 238
FR++ +Y + +ALEI D+ +H + RWLGEP++ +PT +F TNK G+PVL+
Sbjct: 192 FRTLCDYSKRIAVALEIGADLPSNHVIDRWLGEPIKAAILPTSIFLTNKKGFPVLSKMHQ 251
Query: 239 NFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFP 296
I ++L+ +Q +I G N H + + Y+QY++YL ++ + + A+ +EDYLQ P
Sbjct: 252 RLIFRLLKLEVQFIITGTNHHSEKEFCSYLQYLEYLSQNRPPPNAYELFAKGYEDYLQSP 311
Query: 297 LQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPL 356
LQPL ++L S TYEVFEKDPIKY +YQ+A+ + LL RV E+ DT V +MV+GAGRGPL
Sbjct: 312 LQPLMDNLESQTYEVFEKDPIKYSQYQQAIYKCLLGRVPEEEKDTNVQVLMVLGAGRGPL 371
Query: 357 VTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKAD 416
V ASL AAK+A+R++++YAVEKN +AVV L+ + E+W S VT+VS DMR W APEKAD
Sbjct: 372 VNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWG-SQVTVVSSDMREWVAPEKAD 430
Query: 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIK 476
I+VSELLGSF DNELSPECL AQ +LK+DG+SIP YTS++API S KL+ +V++ K
Sbjct: 431 IIVSELLGSFADNELSPECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNEVRACREK 490
Query: 477 EHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLH 536
+ + P +FE PYVV N + ++ PQPCFTF HP+ D DN+RY F E ++VLH
Sbjct: 491 D-RDPEAQFEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLH 549
Query: 537 GIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNV 596
G AGYF+T LY+DI LSI P+T SPG+ SWFP+LFPI +PI ++ I V FWR ++
Sbjct: 550 GFAGYFETVLYQDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNSK 609
Query: 597 KVWYEWLVTKPTPSPIYNLDGRSYKM 622
KVWYEW VT P S I+N GRSY +
Sbjct: 610 KVWYEWAVTAPVCSAIHNPTGRSYTI 635
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA. Specifically mediates the symmetrical dimethylation of arginine residues in the small nuclear ribonucleoproteins Sm D1 (SNRPD1) and Sm D3 (SNRPD3); such methylation being required for the assembly and biogenesis of snRNP core particles. Methylates SUPT5H. Mono- and dimethylates arginine residues of myelin basic protein (MBP) in vitro. Plays a role in the assembly of snRNP core particles. May play a role in cytokine-activated transduction pathways. Negatively regulates cyclin E1 promoter activity and cellular proliferation. May regulate the SUPT5H transcriptional elongation properties. May be part of a pathway that is connected to a chloride current, possibly through cytoskeletal rearrangement. Methylates histone H2A and H4 'Arg-3' during germ cell development. Methylates histone H3 'Arg-8', which may repress transcription. Methylates the Piwi proteins (PIWIL1, PIWIL2 and PIWIL4), methylation of Piwi proteins being required for the interaction with Tudor domain-containing proteins and subsequent localization to the meiotic nuage. Methylates RPS10. Attenuates EGF signaling through the MAPK1/MAPK3 pathway acting at 2 levels. First, monomethylates EGFR; this enhances EGFR 'Tyr-1197' phosphorylation and PTPN6 recruitment, eventually leading to reduced SOS1 phosphorylation. Second, methylates RAF1 and probably BRAF, hence destabilizing these 2 signaling proteins and reducing their catalytic activity (By similarity). Required for induction of E-selectin and VCAM-1, on the endothelial cells surface at sites of inflammation (By similarity). Methylates HOXA9. Macaca fascicularis (taxid: 9541) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q5R698|ANM5_PONAB Protein arginine N-methyltransferase 5 OS=Pongo abelii GN=PRMT5 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 536 bits (1381), Expect = e-151, Method: Compositional matrix adjust.
Identities = 282/627 (44%), Positives = 396/627 (63%), Gaps = 17/627 (2%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLS 67
VS G + I + ++A + FD+ +P+ HPRF R + + P+ + L
Sbjct: 14 VSSGRDLNCVPEIADTLGAVAKQGFDFLCMPVFHPRFKREFIQEPAKNRPGPQTRSDLLL 73
Query: 68 SICPQWLKLIVCDIQCKLK-DFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPD 126
S W LIV + ++ D E + + R A L QEL + YLG+P ++ L+Q D
Sbjct: 74 S-GRDWNTLIVGKLSPWIRPDSEVEKIRRNSEAAML--QELNFGAYLGLPAFLLPLNQED 130
Query: 127 FCNFARTLYAH-SEKNMSYTAWIKVPIRP--------VDTSMLRQQEEEPSSQDTWRWWN 177
N AR L H + S W++VP+ ++ + +E + TW WW+
Sbjct: 131 NTNLARVLTNHIHTGHHSSMFWMRVPLVAPEDLRDDIIENAPTTHTQEYSGEEKTWIWWH 190
Query: 178 MFRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASL 237
FR++ +Y + +ALEI D+ +H + RWLGEP++ +PT +F TNK G+PVL+
Sbjct: 191 NFRTLCDYSKRIAVALEIGADLPSNHVIDRWLGEPIKAAILPTSIFLTNKKGFPVLSKMH 250
Query: 238 ANFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQF 295
I ++L+ +Q +I G N H + + Y+QY++YL ++ + + A+ +EDYLQ
Sbjct: 251 QRLIFRLLKLEVQFIITGTNHHSEKEFCSYLQYLEYLSQNRPPPNAYELFAKGYEDYLQS 310
Query: 296 PLQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGP 355
PLQPL ++L S TYEVFEKDPIKY +YQ+A+ + LLDRV E+ DT V +MV+GAGRGP
Sbjct: 311 PLQPLMDNLESQTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGP 370
Query: 356 LVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKA 415
LV ASL AAK+A+R++++YAVEKN +AVV L+ + E+W S VT+VS DMR W APEKA
Sbjct: 371 LVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWG-SQVTVVSSDMREWVAPEKA 429
Query: 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMI 475
DI+VSELLGSF DNELSPECL AQ +LK+DG+SIP YTS++API S KL+ +V++
Sbjct: 430 DIIVSELLGSFADNELSPECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNEVRACRE 489
Query: 476 KEHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVL 535
K+ + P +FE PYVV N + ++ PQPCFTF HP+ D DN+RY F E ++VL
Sbjct: 490 KD-RDPEAQFEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVL 548
Query: 536 HGIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDN 595
HG AGYF+T LY+DI LSI P+T SPG+ SWFP+LFPI +PI ++ I V FWR ++
Sbjct: 549 HGFAGYFETVLYQDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNS 608
Query: 596 VKVWYEWLVTKPTPSPIYNLDGRSYKM 622
KVWYEW VT P S I+N GRSY +
Sbjct: 609 KKVWYEWAVTAPVCSAIHNPTGRSYTI 635
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA. Specifically mediates the symmetrical dimethylation of arginine residues in the small nuclear ribonucleoproteins Sm D1 (SNRPD1) and Sm D3 (SNRPD3); such methylation being required for the assembly and biogenesis of snRNP core particles. Methylates SUPT5H. Mono- and dimethylates arginine residues of myelin basic protein (MBP) in vitro. Plays a role in the assembly of snRNP core particles. May play a role in cytokine-activated transduction pathways. Negatively regulates cyclin E1 promoter activity and cellular proliferation. May regulate the SUPT5H transcriptional elongation properties. May be part of a pathway that is connected to a chloride current, possibly through cytoskeletal rearrangement. Methylates histone H2A and H4 'Arg-3' during germ cell development. Methylates histone H3 'Arg-8', which may repress transcription. Methylates the Piwi proteins (PIWIL1, PIWIL2 and PIWIL4), methylation of Piwi proteins being required for the interaction with Tudor domain-containing proteins and subsequent localization to the meiotic nuage. Methylates RPS10. Attenuates EGF signaling through the MAPK1/MAPK3 pathway acting at 2 levels. First, monomethylates EGFR; this enhances EGFR 'Tyr-1197' phosphorylation and PTPN6 recruitment, eventually leading to reduced SOS1 phosphorylation. Second, methylates RAF1 and probably BRAF, hence destabilizing these 2 signaling proteins and reducing their catalytic activity (By similarity). Required for induction of E-selectin and VCAM-1, on the endothelial cells surface at sites of inflammation (By similarity). Methylates HOXA9. Pongo abelii (taxid: 9601) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|A7YW45|ANM5_BOVIN Protein arginine N-methyltransferase 5 OS=Bos taurus GN=PRMT5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 536 bits (1381), Expect = e-151, Method: Compositional matrix adjust.
Identities = 279/626 (44%), Positives = 397/626 (63%), Gaps = 15/626 (2%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLS 67
VS G + I + ++A + FD+ +P+ HPRF R + + P+ + L
Sbjct: 14 VSSGRDLNCVPEIADTLGAVAKQGFDFLCMPVFHPRFKREFTQEPAKSRPGPQTRSDLLL 73
Query: 68 SICPQWLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDF 127
S W LIV + ++ +SK + R +++ + QEL + YLG+P ++ L+Q D
Sbjct: 74 S-GRDWNTLIVGKLSPWIRP-DSKVEKIRRNSEAAMLQELNFGAYLGLPAFLLPLNQEDN 131
Query: 128 CNFARTLYAH-SEKNMSYTAWIKVPIRP--------VDTSMLRQQEEEPSSQDTWRWWNM 178
N AR L H + S W++VP+ ++ + EE + TW WW+
Sbjct: 132 TNLARVLTNHIHTGHHSSMFWMRVPLVAPEDLRDDIIENAPTSHTEEYSGEEKTWMWWHN 191
Query: 179 FRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLA 238
FR++ +Y + +ALEI D+ +H + RWLGEP++ +PT +F TNK G+PVL+
Sbjct: 192 FRTLCDYSKRIAVALEIGADLPSNHVIDRWLGEPIKAAILPTSIFLTNKKGFPVLSKMHQ 251
Query: 239 NFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFP 296
I ++L+ +Q +I G N H + + Y+QY++YL ++ + + A+ +EDYLQ P
Sbjct: 252 RLIFRLLKLEVQFIITGTNHHSEKEFCSYLQYLEYLSQNRPPPNAYELFAKGYEDYLQSP 311
Query: 297 LQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPL 356
LQPL ++L S TYEVFEKDPIKY +YQ+A+ + LLDRV E+ DT + +MV+GAGRGPL
Sbjct: 312 LQPLMDNLESQTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNIQVLMVLGAGRGPL 371
Query: 357 VTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKAD 416
V ASL AAK+A+R++++YAVEKN +AVV L+ + E+W S VT+VS DMR W APEKAD
Sbjct: 372 VNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWG-SQVTVVSSDMREWVAPEKAD 430
Query: 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIK 476
I+VSELLGSF DNELSPE L AQ +LK+DG+SIP YTS++API S KL+ +V++ K
Sbjct: 431 IIVSELLGSFADNELSPESLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNEVRACREK 490
Query: 477 EHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLH 536
+ + P +FE PYVV N + ++ PQPCFTF HP+ D DN+RY F E ++VLH
Sbjct: 491 D-RDPEAQFEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLH 549
Query: 537 GIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNV 596
G AGYF+T LY+DI LSI P+T SPG+ SWFP+LFPI +PI ++ I V FWR ++
Sbjct: 550 GFAGYFETVLYQDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNSK 609
Query: 597 KVWYEWLVTKPTPSPIYNLDGRSYKM 622
KVWYEW VT P S I+N GRSY +
Sbjct: 610 KVWYEWAVTAPVCSAIHNPTGRSYTI 635
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA. Specifically mediates the symmetrical dimethylation of arginine residues in the small nuclear ribonucleoproteins Sm D1 (SNRPD1) and Sm D3 (SNRPD3); such methylation being required for the assembly and biogenesis of snRNP core particles. Methylates SUPT5H. Mono- and dimethylates arginine residues of myelin basic protein (MBP) in vitro. Plays a role in the assembly of snRNP core particles. May play a role in cytokine-activated transduction pathways. Negatively regulates cyclin E1 promoter activity and cellular proliferation. May regulate the SUPT5H transcriptional elongation properties. May be part of a pathway that is connected to a chloride current, possibly through cytoskeletal rearrangement. Methylates histone H2A and H4 'Arg-3' during germ cell development. Methylates histone H3 'Arg-8', which may repress transcription. Methylates the Piwi proteins (PIWIL1, PIWIL2 and PIWIL4), methylation of Piwi proteins being required for the interaction with Tudor domain-containing proteins and subsequent localization to the meiotic nuage. Methylates RPS10. Attenuates EGF signaling through the MAPK1/MAPK3 pathway acting at 2 levels. First, monomethylates EGFR; this enhances EGFR 'Tyr-1197' phosphorylation and PTPN6 recruitment, eventually leading to reduced SOS1 phosphorylation. Second, methylates RAF1 and probably BRAF, hence destabilizing these 2 signaling proteins and reducing their catalytic activity (By similarity). Required for induction of E-selectin and VCAM-1, on the endothelial cells surface at sites of inflammation (By similarity). Methylates HOXA9. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q8CIG8|ANM5_MOUSE Protein arginine N-methyltransferase 5 OS=Mus musculus GN=Prmt5 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 533 bits (1372), Expect = e-150, Method: Compositional matrix adjust.
Identities = 281/626 (44%), Positives = 394/626 (62%), Gaps = 15/626 (2%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLS 67
VS G + I + ++A + FD+ +P+ HPRF R + + P+ + L
Sbjct: 14 VSSGRDLNCVPEIADTLGAVAKQGFDFLCMPVFHPRFKREFIQEPAKNRPGPQTRSDLLL 73
Query: 68 SICPQWLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDF 127
S W LIV + + +SK + R +++ + QEL + YLG+P ++ L+Q D
Sbjct: 74 S-GRDWNTLIVGKLSPWIHP-DSKVEKIRRNSEAAMLQELNFGAYLGLPAFLLPLNQEDN 131
Query: 128 CNFARTLYAH-SEKNMSYTAWIKVP-IRPVD-------TSMLRQQEEEPSSQDTWRWWNM 178
N AR L H + S W++VP + P D + EE + TW WW+
Sbjct: 132 TNLARVLTNHIHTGHHSSMFWMRVPLVAPEDLRDDVIANAPTTHTEEYSGEEKTWMWWHN 191
Query: 179 FRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLA 238
FR++ +Y + +ALEI D+ +H + RWLGEP++ +PT +F TNK G+PVL+
Sbjct: 192 FRTLCDYSKRIAVALEIGADLPSNHVIDRWLGEPIKAAILPTSIFLTNKKGFPVLSKVQQ 251
Query: 239 NFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFP 296
I ++L+ +Q +I G N H + + Y+QY++YL ++ + + A+ +EDYLQ P
Sbjct: 252 RLIFRLLKLEVQFIITGTNHHSEKEFCSYLQYLEYLSQNRPPPNAYELFAKGYEDYLQSP 311
Query: 297 LQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPL 356
LQPL ++L S TYEVFEKDPIKY +YQ+A+ + LLDRV E+ +T V +MV+GAGRGPL
Sbjct: 312 LQPLMDNLESQTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKETNVQVLMVLGAGRGPL 371
Query: 357 VTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKAD 416
V ASL AAK+A R++R+YAVEKN +AVV L+ + E+W S VT+VS DMR W APEKAD
Sbjct: 372 VNASLRAAKQAERRIRLYAVEKNPNAVVTLENWQFEEWG-SQVTVVSSDMREWVAPEKAD 430
Query: 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIK 476
I+VSELLGSF DNELSPECL AQ +LK+DG+SIP YTS++API S KL+ +V++ K
Sbjct: 431 IIVSELLGSFADNELSPECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNEVRACREK 490
Query: 477 EHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLH 536
+ + P +FE PYVV N + ++ P+PCFTF HP+ D DN+RY F E ++VLH
Sbjct: 491 D-RDPEAQFEMPYVVRLHNFHQLSAPKPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLH 549
Query: 537 GIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNV 596
G AGYF+T LY+DI LSI P+T SPG+ SWFP+ FPI +PI + I V FWR ++
Sbjct: 550 GFAGYFETVLYRDITLSIRPETHSPGMFSWFPIFFPIKQPITVHEGQNICVRFWRCSNSK 609
Query: 597 KVWYEWLVTKPTPSPIYNLDGRSYKM 622
KVWYEW VT P S I+N GRSY +
Sbjct: 610 KVWYEWAVTAPVCSSIHNPTGRSYTI 635
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA), with a preference for the formation of MMA. Specifically mediates the symmetrical dimethylation of arginine residues in the small nuclear ribonucleoproteins Sm D1 (SNRPD1) and Sm D3 (SNRPD3); such methylation being required for the assembly and biogenesis of snRNP core particles. Methylates SUPT5H. Mono- and dimethylates arginine residues of myelin basic protein (MBP) in vitro. Plays a role in the assembly of snRNP core particles. May play a role in cytokine-activated transduction pathways. Negatively regulates cyclin E1 promoter activity and cellular proliferation. May regulate the SUPT5H transcriptional elongation properties. May be part of a pathway that is connected to a chloride current, possibly through cytoskeletal rearrangement. Methylates histone H2A and H4 'Arg-3' during germ cell development. Methylates histone H3 'Arg-8', which may repress transcription. Methylates the Piwi proteins (PIWIL1, PIWIL2 and PIWIL4), methylation of Piwi proteins being required for the interaction with Tudor domain-containing proteins and subsequent localization to the meiotic nuage. Methylates RPS10. Attenuates EGF signaling through the MAPK1/MAPK3 pathway acting at 2 levels. First, monomethylates EGFR; this enhances EGFR 'Tyr-1197' phosphorylation and PTPN6 recruitment, eventually leading to reduced SOS1 phosphorylation (By similarity). Second, methylates RAF1 and probably BRAF, hence destabilizing these 2 signaling proteins and reducing their catalytic activity. Required for induction of E-selectin and VCAM-1, on the endothelial cells surface at sites of inflammation (By similarity). Methylates HOXA9. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q8GWT4|ANM15_ARATH Protein arginine N-methyltransferase 1.5 OS=Arabidopsis thaliana GN=PMRT15 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust.
Identities = 253/623 (40%), Positives = 358/623 (57%), Gaps = 46/623 (7%)
Query: 26 SLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLSS----ICP-QWLKLIVCD 80
+++ FDY + PLV P + R V+ V + QV + + P QW +V
Sbjct: 34 NISTGGFDYVLAPLVDPSY-RPSLVEGNGV----DTQVLPVCGSDLVLSPSQWSSHVVGK 88
Query: 81 IQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDFC-NFARTLYAHSE 139
I + D +S+ R ++ L QE+ + T+L + ++ + C N+AR + +
Sbjct: 89 ISSWI-DLDSEDEVLRMDSETTLKQEIAWATHLSLQACLLPTPKGKSCANYARCVNQILQ 147
Query: 140 KNMSYTAWIKVPIRPVDTSMLRQQEEEPSSQDTWRWWNMFRSVTNYHSKFELALEINGDI 199
+ W++VP+ + + E D+W WN FR + + SK +AL++ +
Sbjct: 148 GLTTLQLWLRVPLVKSEGDSMDDTSE--GLNDSWELWNSFRLLCEHDSKLSVALDVLSTL 205
Query: 200 CDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLANFIKKILEKNLQVVIQGVNRH 259
+ L RW+GE +R + T F TN GYP L+ I + QVVI G H
Sbjct: 206 PSETSLGRWMGESVRAAILSTDAFLTNARGYPCLSKRHQKLIAGFFDHAAQVVICGKPVH 265
Query: 260 ------------------QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFPLQPLA 301
+ YL YV Y+ +S + + + + D+LQ PLQPL
Sbjct: 266 NLQKPLDSSSEGTEKNPLRIYLDYVAYLFQKMESLSEQERIELG---YRDFLQAPLQPLM 322
Query: 302 NDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASL 361
++L + TYE FE+D +KYI+YQ AV++AL+DRV E+A + T +MVVGAGRGPLV ASL
Sbjct: 323 DNLEAQTYETFERDSVKYIQYQRAVEKALVDRVPDEKASELTTVLMVVGAGRGPLVRASL 382
Query: 362 NAAKEANRKVRVYAVEKNMSAVVGL-KYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420
AA+E +RK++VYAVEKN +AVV L K E W + VTI+S DMR WNAPE+ADI+VS
Sbjct: 383 QAAEETDRKLKVYAVEKNPNAVVTLHNLVKMEGW-EDVVTIISCDMRFWNAPEQADILVS 441
Query: 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIKEHQH 480
ELLGSFGDNELSPECL AQ++LK DGISIP +YTS+I PI + KL+ VK+
Sbjct: 442 ELLGSFGDNELSPECLDGAQRFLKPDGISIPSSYTSFIQPITASKLYNDVKA------HK 495
Query: 481 PLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQD---SVLHG 537
L FE YVV + +AP Q FTF HP+ +N RY K F D +++HG
Sbjct: 496 DLAHFETAYVVKLHSVAKLAPSQSVFTFTHPNFSTKVNNQRYKKLQFSLPSDAGSALVHG 555
Query: 538 IAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNVK 597
AGYFD+ LYKD++L I P T +P + SWFP+ FP+ +P+++ + +EVHFWR C + K
Sbjct: 556 FAGYFDSVLYKDVHLGIEPTTATPNMFSWFPIFFPLRKPVEVHPDTPLEVHFWRCCGSSK 615
Query: 598 VWYEWLVTKPTPSPIYNLDGRSY 620
VWYEW V+ PTPSP++N +GRSY
Sbjct: 616 VWYEWSVSSPTPSPMHNTNGRSY 638
|
Methylates arginine residues of myelin basic protein (MBP) in vitro. Methylates symmetrically histone H4 of the FLC chromatin to form H4R3me2s, which in turn suppresses FLC expression to induce flowering. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|A2X0Q3|ANM5_ORYSI Protein arginine N-methyltransferase 5 OS=Oryza sativa subsp. indica GN=PRMT5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 441 bits (1135), Expect = e-123, Method: Compositional matrix adjust.
Identities = 251/640 (39%), Positives = 358/640 (55%), Gaps = 46/640 (7%)
Query: 12 LEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLSSICP 71
L++P + + + + FD+ + PLV P + R + L
Sbjct: 21 LDFPAGEELPAVLSHSLSSSFDFLLAPLVDPDY-------RPTPGSVLPVAASDLVLGPA 73
Query: 72 QWLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDFC-NF 130
QW IV I + D +++ + R ++ L QE+ + ++L + V+ + C N+
Sbjct: 74 QWSSHIVGKIN-EWIDLDAEDEQLRLDSEITLKQEIAWASHLSLQACVLPPPKRSSCANY 132
Query: 131 ARTLYAHSEKNMSYTAWIKVPIR---PVDTS--MLRQQEEEPSSQDTWRWWNMFRSVTNY 185
AR + + + W+++P+ P+D + + + D+W WWN FR + +
Sbjct: 133 ARVVNHILQGLTNLQLWLRIPLEKSEPMDEDHDGAKDNSDMSDTVDSWEWWNSFRLLCEH 192
Query: 186 HSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLANFIKKIL 245
S+ +AL++ + + L RW GEP+R + T+ F TN GYP L+ +
Sbjct: 193 SSQLCVALDVLSTLPSMNSLGRWFGEPVRAAILQTNAFLTNARGYPCLSKRHQKLLTGFF 252
Query: 246 EKNLQVVIQGVNRHQ-----------------SYLHYVQ-YMQYLKKSSHSDDPLSMAAQ 287
++QV+I G + H + H + Y+ Y+ DPL +
Sbjct: 253 NHSVQVIISGRSNHNVSQGGVLSGDENHTEDTAVRHALSPYLDYIAYIYQRMDPLPEQER 312
Query: 288 ---DFEDYLQFPLQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVT 344
++ D+LQ PLQPL ++L + TYE FEKD +KY +YQ A+ +AL+DRVS + T T
Sbjct: 313 FEINYRDFLQSPLQPLMDNLEAQTYETFEKDTVKYTQYQRAIAKALVDRVSDDDVSTTKT 372
Query: 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL-KYKKEEQWAQSDVTIVS 403
+MVVGAGRGPLV ASL AA+E RK++VYAVEKN +AV+ L K E W +S VTI+S
Sbjct: 373 VLMVVGAGRGPLVRASLQAAEETGRKLKVYAVEKNPNAVITLHSLIKLEGW-ESLVTIIS 431
Query: 404 EDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMS 463
DMR W APEKADI+VSELLGSFGDNELSPECL AQ++LK DGISIP +YTS+I PI +
Sbjct: 432 SDMRCWEAPEKADILVSELLGSFGDNELSPECLDGAQRFLKPDGISIPSSYTSFIEPITA 491
Query: 464 HKLFTQVKSSMIKEHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYT 523
KL +K+ H FE YVV +AP Q FTF HP+ + N RYT
Sbjct: 492 SKLHNDIKAHKDIAH------FETAYVVKLHRIARLAPTQSVFTFDHPNPSPNASNQRYT 545
Query: 524 KATFIAEQDS---VLHGIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLK 580
K F Q++ ++HG AGYFD LYKD++L I P+T +P + SWFP+ FP+ +PI +
Sbjct: 546 KLKFEIPQETGSCLVHGFAGYFDAVLYKDVHLGIEPNTATPNMFSWFPIFFPLRKPIYVP 605
Query: 581 TNDEIEVHFWRLCDNVKVWYEWLVTKPTPSPIYNLDGRSY 620
+ IEVHFWR C KVWYEW VT P+PSPI+N +GRSY
Sbjct: 606 SKTPIEVHFWRCCGATKVWYEWAVTAPSPSPIHNSNGRSY 645
|
Methylates arginine residues in proteins such as histone H4. Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q6YXZ7|ANM5_ORYSJ Protein arginine N-methyltransferase 5 OS=Oryza sativa subsp. japonica GN=PRMT5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 441 bits (1135), Expect = e-123, Method: Compositional matrix adjust.
Identities = 251/640 (39%), Positives = 358/640 (55%), Gaps = 46/640 (7%)
Query: 12 LEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLSSICP 71
L++P + + + + FD+ + PLV P + R + L
Sbjct: 21 LDFPAGEELPAVLSHSLSSSFDFLLAPLVDPDY-------RPTPGSVLPVAASDLVLGPA 73
Query: 72 QWLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDFC-NF 130
QW IV I + D +++ + R ++ L QE+ + ++L + V+ + C N+
Sbjct: 74 QWSSHIVGKIS-EWIDLDAEDEQLRLDSEITLKQEIAWASHLSLQACVLPPPKRSSCANY 132
Query: 131 ARTLYAHSEKNMSYTAWIKVPIR---PVDTS--MLRQQEEEPSSQDTWRWWNMFRSVTNY 185
AR + + + W+++P+ P+D + + + D+W WWN FR + +
Sbjct: 133 ARVVNHILQGLTNLQLWLRIPLEKSEPMDEDHDGAKDNSDMSDTVDSWEWWNSFRLLCEH 192
Query: 186 HSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLANFIKKIL 245
S+ +AL++ + + L RW GEP+R + T+ F TN GYP L+ +
Sbjct: 193 SSQLCVALDVLSTLPSMNSLGRWFGEPVRAAILQTNAFLTNARGYPCLSKRHQKLLTGFF 252
Query: 246 EKNLQVVIQGVNRHQ-----------------SYLHYVQ-YMQYLKKSSHSDDPLSMAAQ 287
++QV+I G + H + H + Y+ Y+ DPL +
Sbjct: 253 NHSVQVIISGRSNHNVSQGGVLSGDENHTEDTAVRHALSPYLDYIAYIYQRMDPLPEQER 312
Query: 288 ---DFEDYLQFPLQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVT 344
++ D+LQ PLQPL ++L + TYE FEKD +KY +YQ A+ +AL+DRVS + T T
Sbjct: 313 FEINYRDFLQSPLQPLMDNLEAQTYETFEKDTVKYTQYQRAIAKALVDRVSDDDVSTTKT 372
Query: 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL-KYKKEEQWAQSDVTIVS 403
+MVVGAGRGPLV ASL AA+E RK++VYAVEKN +AV+ L K E W +S VTI+S
Sbjct: 373 VLMVVGAGRGPLVRASLQAAEETGRKLKVYAVEKNPNAVITLHSLIKLEGW-ESLVTIIS 431
Query: 404 EDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMS 463
DMR W APEKADI+VSELLGSFGDNELSPECL AQ++LK DGISIP +YTS+I PI +
Sbjct: 432 SDMRCWEAPEKADILVSELLGSFGDNELSPECLDGAQRFLKPDGISIPSSYTSFIEPITA 491
Query: 464 HKLFTQVKSSMIKEHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYT 523
KL +K+ H FE YVV +AP Q FTF HP+ + N RYT
Sbjct: 492 SKLHNDIKAHKDIAH------FETAYVVKLHRIARLAPTQSVFTFDHPNPSPNASNQRYT 545
Query: 524 KATFIAEQDS---VLHGIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLK 580
K F Q++ ++HG AGYFD LYKD++L I P+T +P + SWFP+ FP+ +PI +
Sbjct: 546 KLKFEIPQETGSCLVHGFAGYFDAVLYKDVHLGIEPNTATPNMFSWFPIFFPLRKPIYVP 605
Query: 581 TNDEIEVHFWRLCDNVKVWYEWLVTKPTPSPIYNLDGRSY 620
+ IEVHFWR C KVWYEW VT P+PSPI+N +GRSY
Sbjct: 606 SKTPIEVHFWRCCGATKVWYEWAVTAPSPSPIHNSNGRSY 645
|
Methylates arginine residues in proteins such as histone H4. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q54KI3|ANM5_DICDI Protein arginine N-methyltransferase 5 OS=Dictyostelium discoideum GN=prmt5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 410 bits (1054), Expect = e-113, Method: Compositional matrix adjust.
Identities = 253/655 (38%), Positives = 359/655 (54%), Gaps = 53/655 (8%)
Query: 1 MSQAKIAVSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFAR-------HKDVDRY 53
++ A+ S G+E + +IQ IE + + + + HPRF R
Sbjct: 2 INSAQYEFSCGVELESV-DIQLDIERAYDLEYQFIMTSISHPRFNRDFTKASIGNSFSNK 60
Query: 54 RVFGLPEAQVQSLSSICPQWLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYL 113
F + +QS W IV D +S R ++ L QE+ + +L
Sbjct: 61 VAFTRSDTLLQS-----NYWRSSIVGKTSTNGIDLDSIDPTIRSNSVKTLKQEISWAAHL 115
Query: 114 GIPFIVVSLDQPDFCNFARTLYAHSEKNMSYT-AWIKVPIRPVDTSMLRQ----QEEEPS 168
+P I++ + N+A+ + S +++SY WI++P+ + +L + Q+ S
Sbjct: 116 SLPSILLPTPSFNSTNYAQVV-NQSLQSLSYMKVWIRIPLVSPKSQLLNKFDYYQDHNTS 174
Query: 169 ---------SQDTWRWWNMFRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIP 219
+ + W WWN FR + N H LE+ D+ +L +WLGEP++CV IP
Sbjct: 175 GGSGNNLVDNDNPWEWWNNFRLLCNQHPNLSAVLEMTSDLPSKEQLQQWLGEPVKCVIIP 234
Query: 220 THVFQTNKAGYPVLNASLANFIKKILEKNLQVVIQGVNRHQSYLHYVQYMQYLKKSSHSD 279
T VF TNKAG+P L+ + F+ ++ N+Q V+ G + Y YLK +
Sbjct: 235 TSVFLTNKAGFPTLSKAHQQFLLQLFNYNIQFVVSGASMDT----LKDYKTYLKFLHTNQ 290
Query: 280 DPLSMAA---QDFEDYLQFPLQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSP 336
+PL+ + D+LQ PLQPL ++L S TYEVFEKDPIKY +YQ AV+ ALLD
Sbjct: 291 NPLTQEEYFEMPYLDFLQAPLQPLMDNLESQTYEVFEKDPIKYKQYQNAVRLALLDLDKK 350
Query: 337 EQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQ 396
+ D + IMVVGAGRGPLV +S+ A+ EAN+ V+V+AVEKN +A+V L+ + + +
Sbjct: 351 DSKDDPII-IMVVGAGRGPLVNSSIQASIEANKFVKVFAVEKNPNAIVTLRNRIIMEGWE 409
Query: 397 SDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKED-GISIPYNYT 455
VT++ DMR WN +ADIMVSELLGSFGDNELSPECL AQ+YLK+D GISIP YT
Sbjct: 410 EIVTVIDSDMRDWNTEYRADIMVSELLGSFGDNELSPECLDGAQRYLKKDTGISIPTWYT 469
Query: 456 SYIAPIMSHKLFTQVKSSMIKEHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDK 515
SYIAPI S KLF +V + +H E PYVV N + +A +P FTF HP+ D+
Sbjct: 470 SYIAPISSSKLFNEVTAYGDLKHS------ETPYVVKPHNFHQLAESKPLFTFSHPNRDE 523
Query: 516 DPDNSRYTKATF-IAEQDSVLHGIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIH 574
DNSRY F + + HG GYFD LYKD+++SI+P S G+ SWFP+ FP+
Sbjct: 524 IIDNSRYESLEFELTIPSTTCHGFIGYFDCCLYKDVHISINPSNFSTGMFSWFPIYFPLK 583
Query: 575 EPIQLKTND---------EIEVHFWRLCDNVKVWYEWLVTKPTPSPIYNLDGRSY 620
+P+ + + + FWR KVWYEW + PT +PI N+ GRSY
Sbjct: 584 QPVYFSNGNLNNNNNNNIKAKCAFWRNVSKSKVWYEWCLLSPTITPIQNVGGRSY 638
|
Methylates arginine residues in proteins such as small nuclear ribonucleoproteins or histone H2A/H4. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q9U6Y9|ANM5_DROME Protein arginine N-methyltransferase 5 OS=Drosophila melanogaster GN=csul PE=1 SV=2 | Back alignment and function description |
|---|
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 220/539 (40%), Positives = 307/539 (56%), Gaps = 23/539 (4%)
Query: 96 RDHAKDLLHQELEYITYL-GIPFIVVSLDQPDFCNFARTLYAHSEKNMSYTAW-IKVPIR 153
R+HAK++ +++ + +L + ++V L P+ N A + A ++ + W I+VPI
Sbjct: 81 REHAKEVFMRDVAWAEHLQNVGNLMVRLRGPENENLASIVLAKTKDDFPSGNWFIQVPIT 140
Query: 154 PVDTSMLRQQEEEPS-------SQDTWRWWNMFRSVTNYHSKFELALEIN-GDICDDHEL 205
+ + +++ + S D W WWN R VT + +K ++ +E+N D +
Sbjct: 141 NPELATFEHRKDATAEEVAEAESNDPWNWWNNLRMVTKHSTKVKVVIELNDADRPSKETV 200
Query: 206 TRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLANFIKKILEKNLQVVIQGVNRHQSYLHY 265
RWLGEP+ + IP+ +F N++ Y VL + + ++I ++ Y
Sbjct: 201 RRWLGEPIEAIIIPSSLFVRNRSNYCVLKKEWQLIVGHFISVRANIIISTNPNDKALCQY 260
Query: 266 VQYMQYLKKSSHSDDPLSMAAQDFEDYLQFPLQPLANDLSSFTYEVFEKDPIKYIRYQEA 325
Y+ L +D+ +E+ L+ PLQPL ++L ++TYEVFE DP+KY YQ+A
Sbjct: 261 ADYVNKLI----NDNCDKHMLNSYENMLEIPLQPLCDNLDTYTYEVFETDPVKYKLYQDA 316
Query: 326 VQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVG 385
VQ ALLDRVS +A T +T +M++G GRGPL A NAA+ RKVR+Y +EKN +A+
Sbjct: 317 VQAALLDRVSAAEAKTKLTVVMLLGGGRGPLARAVFNAAELTKRKVRLYIIEKNPNAIRT 376
Query: 386 LKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKE 445
L + WA DV I S+DMR ++ PE ADIMVSELLGSFGDNELSPECL A K LK
Sbjct: 377 LSNMVKTLWADKDVHIFSKDMRDFSPPELADIMVSELLGSFGDNELSPECLDGALKLLKP 436
Query: 446 DGISIPYNYTSYIAPIMSHKLFTQVKSSMIKEHQHPLY-RFEQPYVVYQRNKYNIAPPQP 504
DGISIPY TSYI P+MS L V + P Y F+ YV +N Y+I PQ
Sbjct: 437 DGISIPYKSTSYINPLMSAVLHQNVCQLL------PTYPAFDYGYVSLLKNIYHIDEPQA 490
Query: 505 CFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGYFDTFLYKDINLSIHPDTLSPGLI 564
F FVHP+ ++ DN+R +F +D VLHGI GYFDT LYKDI LSI+P T +PG+
Sbjct: 491 LFEFVHPNRAENIDNTRCKTVSFKVNKDCVLHGIGGYFDTHLYKDICLSINPLTHTPGMF 550
Query: 565 SWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNVKVWYEW-LVTKPTPSPIYNLDGRSYKM 622
SWFP+ F P L+ I + FWR D KVWYEW +V P +N G Y M
Sbjct: 551 SWFPMFFAT-RPRTLREGQTISIQFWRCVDATKVWYEWQVVNSPDDWEHHNTRGTGYNM 608
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and symmetrical dimethylarginine (sDMA) (By similarity). Specifically mediates the symmetrical dimethylation of arginine residues in the small nuclear ribonucleoproteins SmD1 and SmD3. Required during oogenesis for pole cell formation in the pathway controlled by oskar (osk) and for abdominal segments during early embryogenesis. Involved in nanos (nos) and germ cells mRNAs localization. Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 626 | ||||||
| 321460483 | 622 | hypothetical protein DAPPUDRAFT_308857 [ | 0.964 | 0.971 | 0.476 | 1e-160 | |
| 383853772 | 622 | PREDICTED: protein arginine N-methyltran | 0.968 | 0.974 | 0.459 | 1e-155 | |
| 260834801 | 627 | hypothetical protein BRAFLDRAFT_114443 [ | 0.972 | 0.971 | 0.472 | 1e-154 | |
| 242014042 | 626 | protein arginine N-methyltransferase, pu | 0.980 | 0.980 | 0.466 | 1e-153 | |
| 171545965 | 631 | protein arginine methyltransferase 5 [Or | 0.966 | 0.958 | 0.455 | 1e-153 | |
| 156552545 | 628 | PREDICTED: protein arginine N-methyltran | 0.956 | 0.953 | 0.466 | 1e-152 | |
| 348539960 | 631 | PREDICTED: protein arginine N-methyltran | 0.971 | 0.963 | 0.454 | 1e-151 | |
| 171847328 | 629 | prmt5 protein [Xenopus (Silurana) tropic | 0.971 | 0.966 | 0.453 | 1e-151 | |
| 118722330 | 631 | protein arginine N-methyltransferase 5 [ | 0.980 | 0.973 | 0.453 | 1e-151 | |
| 229892828 | 637 | protein arginine N-methyltransferase 5 [ | 0.976 | 0.959 | 0.448 | 1e-151 |
| >gi|321460483|gb|EFX71525.1| hypothetical protein DAPPUDRAFT_308857 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 299/627 (47%), Positives = 404/627 (64%), Gaps = 23/627 (3%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPR----FARHKDVDRYRVFGLPEAQV 63
VS GL++ + +I + ++ +D+A LP+ HPR F+ + R F + +
Sbjct: 5 VSCGLDFVSPADITNALQIATESKYDFAALPIAHPRHKRDFSGNSQARRLTAFTRADLIL 64
Query: 64 QSLSSICPQWLKLIVCDIQCKLK-DFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSL 122
S W LIV I + D E K + R ++ +L QEL + +LG+P ++V L
Sbjct: 65 NS-----SDWSTLIVGKISPHVDLDHEDKLL--RQESEKVLEQELSFAGHLGLPAVLVPL 117
Query: 123 DQPDFCNFARTLY----AHSEKNMSYTAWIKVP-IRP-VDTSMLRQQEEEPSSQDTWRWW 176
+ + NFAR L+ + Y W+ +P I P ++ S + +E DTW WW
Sbjct: 118 RKNN-TNFARFLHNKVLSSPLNQARYHVWLHLPMISPKIEASQFERDVDEEEVDDTWHWW 176
Query: 177 NMFRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNAS 236
N FR N+ K LALE+ D+ D ++ RWLGEP++C+ +PTH+F TNK G+PVL S
Sbjct: 177 NNFRITANFEKKLSLALELTADLPDAEDIDRWLGEPIKCLVVPTHLFMTNKKGFPVLPKS 236
Query: 237 LANFIKKILEKNLQVVIQGVNRHQSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFP 296
I++ L + Q++I G RHQ Y HY QY+++L + + DP+ AQ +ED+LQFP
Sbjct: 237 HQVAIRQFLRQKTQILITGAQRHQHYKHYQQYIEHLWQVGYESDPVMQFAQGYEDFLQFP 296
Query: 297 LQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPL 356
LQPL ++L S TYEVFEKDP+KY YQ A+ A+LD+V E+ DT V T+MVVGAGRGPL
Sbjct: 297 LQPLMDNLESQTYEVFEKDPVKYTEYQRAMYLAILDKVPLEEKDTKVITLMVVGAGRGPL 356
Query: 357 VTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKAD 416
V A+L AA++A+R++RVYAVEKN +A+V L+ +E+W VTIVS DMR W+APEKAD
Sbjct: 357 VRAALTAAEKADRRIRVYAVEKNPNAIVTLQCLADEEWGDR-VTIVSCDMRDWDAPEKAD 415
Query: 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIK 476
I+VSELLGSFGDNELSPECL AQK+LK+DGISIP +YTS++ PI S KLF +V+S +
Sbjct: 416 ILVSELLGSFGDNELSPECLDGAQKFLKDDGISIPSSYTSFLGPIQSSKLFNEVRSC--R 473
Query: 477 EHQHPLY-RFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVL 535
E P + FE YVV+ RN+ +A PQ FTF HP+ + DNSRY F + DS+L
Sbjct: 474 ERDKPYFTSFEMSYVVHFRNRTELADPQALFTFTHPNREMPIDNSRYEVRHFPIKCDSML 533
Query: 536 HGIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDN 595
HG AGYF+T LYKD+ LSI+P T SPG+ SWFPVLFPI PI LK D +E+HFWR +
Sbjct: 534 HGFAGYFETVLYKDVMLSINPATHSPGMFSWFPVLFPIQNPISLKKGDVLEIHFWRCVNR 593
Query: 596 VKVWYEWLVTKPTPSPIYNLDGRSYKM 622
VWYEW VTKP S I+N GRS+ +
Sbjct: 594 THVWYEWCVTKPLGSAIHNPLGRSHNI 620
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383853772|ref|XP_003702396.1| PREDICTED: protein arginine N-methyltransferase 5 [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 286/623 (45%), Positives = 395/623 (63%), Gaps = 17/623 (2%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLS 67
VS GL++ + +I + + + F++ PLVHP F R V+G+ + + +
Sbjct: 7 VSCGLDFCSVPDISQCLFAANSSKFEFICAPLVHPLFKRE------FVYGVAKTRTGPFT 60
Query: 68 S----ICPQ-WLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSL 122
+C W LI+ + +K +SK R ++++ L QEL ++LG+ + L
Sbjct: 61 RPDLVLCSSDWNNLIIGKLSPYIK-VDSKNRVLRKNSEETLIQELTLASHLGLVGVTFKL 119
Query: 123 DQP--DFCNFARTLYAHSEKNMSYTAWIKVPIR-PVDTSMLRQQEEEPSSQDTWRWWNMF 179
N AR + S WI+VP+ P+ + ++EE S + W WWN F
Sbjct: 120 TGGIEHNTNLARIICDKLSSTCSLQVWIQVPMENPIKQAYFYREEECDSVESPWEWWNAF 179
Query: 180 RSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLAN 239
R++ +Y K + L ++ D+ + E+ RWLGEP++C+ PT F TNK G+PVL+ +
Sbjct: 180 RAICDYDRKLGVTLIVSHDLPEQEEIDRWLGEPVKCLIFPTTSFITNKKGFPVLSKAHQA 239
Query: 240 FIKKILEKNLQVVIQGVNRHQSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFPLQP 299
+KK +Q V+ G NRH S +Y Y++YL K P+ M + +EDYLQ PLQP
Sbjct: 240 LVKKFAALEVQFVLTGANRHLSLGYYHDYLEYLWKGCQMSGPVEMFTRGYEDYLQCPLQP 299
Query: 300 LANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTA 359
L+++L S TYE+FEKDP+KY +YQ A+ QA+L VS + +T IMVVGAGRGPLV A
Sbjct: 300 LSDNLESQTYEIFEKDPVKYTQYQTAIHQAILKTVSTSEDNTRKIVIMVVGAGRGPLVHA 359
Query: 360 SLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMV 419
SLNAA+ AN+K++VYAVEKN +AV+ L+ + + W + VT+VS DMR W+APEKADI+V
Sbjct: 360 SLNAAEMANQKIKVYAVEKNPNAVLTLQALERDVW-EDKVTVVSCDMRDWDAPEKADILV 418
Query: 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIKEHQ 479
SELLGSFGDNELSPECL Q++LKE GISIP +YTSYIAP+ S KL+ +V+ K+ +
Sbjct: 419 SELLGSFGDNELSPECLDGVQRFLKETGISIPCSYTSYIAPVQSSKLYNEVRHCSDKD-K 477
Query: 480 HPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIA 539
HPL FE YVV+ +NKY IA PQP FTF HP+ + DNSRY TF +Q+ VLHG +
Sbjct: 478 HPLAHFETAYVVHLQNKYVIAKPQPLFTFKHPNRENVIDNSRYEVKTFEVQQNCVLHGFS 537
Query: 540 GYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNVKVW 599
GYFDT LYKD+ LSI P T SPG+ SWFP+ FPI EP+QLK D+I VHFWR C VW
Sbjct: 538 GYFDTVLYKDVMLSIQPSTRSPGMFSWFPIFFPIKEPVQLKAGDQIVVHFWRQCSTKNVW 597
Query: 600 YEWLVTKPTPSPIYNLDGRSYKM 622
YEW ++KP P P++N +GR Y +
Sbjct: 598 YEWCISKPVPGPVHNPNGRFYTI 620
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|260834801|ref|XP_002612398.1| hypothetical protein BRAFLDRAFT_114443 [Branchiostoma floridae] gi|229297775|gb|EEN68407.1| hypothetical protein BRAFLDRAFT_114443 [Branchiostoma floridae] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 295/625 (47%), Positives = 396/625 (63%), Gaps = 16/625 (2%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLS 67
VSVG + +I S +ES + FD+ P+VHPR+ R + R G P A +S
Sbjct: 7 VSVGRDLHYVPDITSSLESASNNGFDFVCSPIVHPRYKR--ECLEGRAKGRPGAFTRSDL 64
Query: 68 SICPQ-WLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPD 126
+ Q W LIV + L+ +S+ R + + L QEL Y +L +P I+V +
Sbjct: 65 LLTSQDWSTLIVGKLSPWLQP-DSEIESVRKNCEKALQQELSYAAHLSLPAILVQVRSTR 123
Query: 127 FCNFARTLYAHSEKNMSYTAWIKVPIRPVDTSMLRQQEEEPS-------SQDTWRWWNMF 179
N AR ++ H + + WI+VP++ D S E EP+ SQD W WWN F
Sbjct: 124 CANLARYIHYHMMGHNNTLMWIQVPLQSPDVSREDVIEGEPAEDPEDNKSQDPWEWWNTF 183
Query: 180 RSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLAN 239
RS+ +YH K LALE+ D+ + +L RWLGEP+R IPT +F TNK GYPVL+ + +
Sbjct: 184 RSICHYHKKLALALELTPDLPSESQLRRWLGEPVRAAIIPTSIFLTNKKGYPVLSRAHQS 243
Query: 240 FIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFPL 297
F++++ + + Q+VI G RH + Y QYM++L +++ D ++M A+ +EDYLQ PL
Sbjct: 244 FVQQLFQYDAQIVISGTARHGEKGLRAYQQYMEHLFQTNPQPDQVTMFARGYEDYLQCPL 303
Query: 298 QPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLV 357
QPL ++L S TYE FEKDP+KY +YQ+AV ALLD++ + DT +MV+GAGRGPLV
Sbjct: 304 QPLFDNLESNTYETFEKDPVKYSQYQQAVYYALLDKIPVSEKDTKKIVLMVLGAGRGPLV 363
Query: 358 TASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADI 417
SL AAK A R++ VYAVEKN +AVV L+ K+E W + VT+VS DMR W APEKADI
Sbjct: 364 RCSLEAAKRAERQIIVYAVEKNPNAVVTLEALKDEMWGEQ-VTVVSCDMREWEAPEKADI 422
Query: 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIKE 477
+VSELLGSFGDNELSPECL AQK+LK+DGISIP YTSYIAP+ SHKL+ +V+ ++
Sbjct: 423 IVSELLGSFGDNELSPECLDGAQKFLKDDGISIPREYTSYIAPVSSHKLYNEVRGCKERD 482
Query: 478 HQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHG 537
+ P FE YVV N +A PQPCFTF HP+ DN+R + F E+++VL+G
Sbjct: 483 -KGPEAPFETAYVVRLHNYCELAEPQPCFTFHHPNRGLI-DNTRAKEFEFDIEENTVLNG 540
Query: 538 IAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNVK 597
AGYFDT LY D+ LSI P T SPG+ SWF + FPI EPI L ++V+FWR C K
Sbjct: 541 FAGYFDTVLYGDVTLSIVPRTHSPGMFSWFSIFFPIREPIYLNKGSRLKVNFWRCCTEQK 600
Query: 598 VWYEWLVTKPTPSPIYNLDGRSYKM 622
VWYEW V P+ +PI+N GRSY +
Sbjct: 601 VWYEWCVNSPSVTPIHNPAGRSYTI 625
|
Source: Branchiostoma floridae Species: Branchiostoma floridae Genus: Branchiostoma Family: Branchiostomidae Order: Class: Phylum: Chordata Superkingdom: Eukaryota |
| >gi|242014042|ref|XP_002427707.1| protein arginine N-methyltransferase, putative [Pediculus humanus corporis] gi|212512142|gb|EEB14969.1| protein arginine N-methyltransferase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 295/632 (46%), Positives = 399/632 (63%), Gaps = 18/632 (2%)
Query: 1 MSQAKIAVSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDV---DRYRVFG 57
MSQ S GL+ I+S +++ + +++ LPLVH RF R +R F
Sbjct: 1 MSQQVQRASCGLDLCAVPEIRSALKAASMNRYEFVCLPLVHSRFKREFFASWKNRPGPFT 60
Query: 58 LPEAQVQSLSSICPQWLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPF 117
P+ + S W IV I + D +S R ++ L QEL Y +LG+P
Sbjct: 61 RPDLTLPSRD-----WNSFIVAKISPYI-DVDSPNEFIRRQSEYALEQELGYAYHLGVPA 114
Query: 118 IVVSLDQPDFCNFARTLYAHSEKNMSYTAWIKVPIRP--VDTSMLRQQEEEPSSQ----D 171
I++SL + N AR LY+ + Y WI VP+ + S R EE
Sbjct: 115 IMLSLKGLNTSNLARILYSKVLEITQYQVWIHVPMVSFKISASQWRSDYEENGKNVDEMC 174
Query: 172 TWRWWNMFRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYP 231
TW WWN FRS+ + K + LE++ D+ E RWLGEP++C+ + T F TNK GYP
Sbjct: 175 TWEWWNKFRSLLGFEKKIGIVLEMSTDLPSQEECDRWLGEPIKCLLLSTSTFVTNKKGYP 234
Query: 232 VLNASLANFIKKILEKNLQVVIQGVNRHQSYLHYVQYMQYL-KKSSHSDDPLSMAAQDFE 290
+L+ + F+K ++ ++QV+I+G +H + Y +Y+ +L + + +DPLS + +E
Sbjct: 235 ILSKAHQAFVKSLVPLSVQVIIKGHTKHDNLGFYQKYIDHLWQDVQYQNDPLSYFGRGYE 294
Query: 291 DYLQFPLQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVG 350
D LQ PLQPL ++L S TYEVFEKDP+KY Y A+ AL+D +S E+ +T + T+MVVG
Sbjct: 295 DCLQCPLQPLMDNLESHTYEVFEKDPVKYNEYLRAIYYALIDNISSEEKETKILTVMVVG 354
Query: 351 AGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN 410
AGRGPLVTA+LNAA A+RK++VYA+EKN +AVV L+ +KEE W S VT+VS DMR ++
Sbjct: 355 AGRGPLVTAALNAAHRADRKIKVYAIEKNPNAVVTLEAQKEEIWKDS-VTVVSIDMRKFD 413
Query: 411 APEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQV 470
PEKADI+VSELLGSFGDNELSPECL AQK+LK+ GISIP +YTSYI P+ + KL+ +V
Sbjct: 414 PPEKADILVSELLGSFGDNELSPECLDGAQKFLKKGGISIPQSYTSYICPVQTSKLYNEV 473
Query: 471 KSSMIKEHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAE 530
+ +K+ H L +FE PYVV Q+NKY IA Q FTF HP+ D DN+RY F E
Sbjct: 474 RLIKLKD-SHILAQFETPYVVLQKNKYIIAKNQALFTFHHPNYDDPIDNTRYKILNFKVE 532
Query: 531 QDSVLHGIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFW 590
QD VLHG +G F+T LYKDI+LSI P+T S G+ SWFP+ FPI EP+QLK +EIE+HFW
Sbjct: 533 QDCVLHGFSGCFETILYKDISLSIVPETYSQGMFSWFPIFFPISEPVQLKKGNEIELHFW 592
Query: 591 RLCDNVKVWYEWLVTKPTPSPIYNLDGRSYKM 622
R VWYEW +TKP P I+N +GRSYK+
Sbjct: 593 RAVSKTNVWYEWTITKPVPLHIHNPNGRSYKI 624
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|171545965|ref|NP_001116399.1| protein arginine methyltransferase 5 [Oryzias latipes] gi|167651000|gb|ABZ90976.1| PRMT5 [Oryzias latipes] | Back alignment and taxonomy information |
|---|
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 287/630 (45%), Positives = 405/630 (64%), Gaps = 25/630 (3%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLS 67
VS G + I + + ++A FD+ +PL HPRFAR +++ + P AQ +S
Sbjct: 10 VSCGRDMNCVPEIAATLAAVAKLGFDFLCMPLFHPRFAREFELEPAK--SRPGAQTRSDL 67
Query: 68 SICPQ-WLKLIVCDIQ---CKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLD 123
+C + W LIV + C + E+ ERR+ +++ L QEL + YLG+P ++ L
Sbjct: 68 LLCGRDWGTLIVGKLSPWICADSEIET---ERRN-SEEALTQELNFSAYLGLPVFMIPLT 123
Query: 124 QPDFCNFARTLYAH-SEKNMSYTAWIKVPIRPVDTSMLRQQEEEPSS--------QDTWR 174
P N AR L +H + + WI+VP+ + + E EP S + TW
Sbjct: 124 GPHNANLARLLLSHIHTGHHTSNFWIRVPLMAAEDTREDLIENEPFSCPDETSVDEKTWN 183
Query: 175 WWNMFRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLN 234
WWN FR++ +Y+ + LA++I D+ D + +W+GEP++ +PT +F TNK G+PVL+
Sbjct: 184 WWNTFRTLCDYNKRICLAIDIGADMPSDAVIDKWMGEPIKAAILPTSLFLTNKKGFPVLS 243
Query: 235 ASLANFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDY 292
+ I ++ + Q + G +RH + + Y+QY++YL ++ + + + A+ +EDY
Sbjct: 244 KAHQRVIFRLFKLEAQFIFTGTSRHTEKDFRSYLQYLEYLNQNRPAPNAYELFAKGYEDY 303
Query: 293 LQFPLQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAG 352
LQ PLQPL ++L S TYEVFEKDPIKY +YQ+AV + LLDRV EQ DT V +MV+GAG
Sbjct: 304 LQSPLQPLMDNLESQTYEVFEKDPIKYSQYQQAVYKCLLDRVPEEQKDTNVQVLMVLGAG 363
Query: 353 RGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP 412
RGPLV ASL AA +A+RK++VYAVEKN +AV+ L+ + E+W VT+VS DMR W AP
Sbjct: 364 RGPLVNASLRAASQADRKLKVYAVEKNPNAVITLENWRFEEWGDR-VTVVSSDMREWEAP 422
Query: 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKS 472
EKADI+VSELLGSFGDNELSPECL AQ +LK+DG+SIP +YTS++AP+ S KL+ +V+
Sbjct: 423 EKADIIVSELLGSFGDNELSPECLDGAQHFLKDDGVSIPCSYTSFLAPLSSSKLYNEVRG 482
Query: 473 SMIKEHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQD 532
++ + P FE PYVV N + +A P+PCFTF HP KD +N+RY F +
Sbjct: 483 CRERD-KSPECHFETPYVVRLHNFHELADPKPCFTFTHPK--KDMNNNRYQCLRFSVGCN 539
Query: 533 SVLHGIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRL 592
SVLHG AGYF+T LYKD+ LSI P+T SPG+ SWFP+LFP+ +PI + +DEI V FWR
Sbjct: 540 SVLHGFAGYFETTLYKDVTLSIKPETHSPGMFSWFPILFPLKQPISIARDDEIAVRFWRC 599
Query: 593 CDNVKVWYEWLVTKPTPSPIYNLDGRSYKM 622
+ KVWYEW VT+PT S I+N GRSY +
Sbjct: 600 NNGKKVWYEWAVTEPTCSAIHNPAGRSYTI 629
|
Source: Oryzias latipes Species: Oryzias latipes Genus: Oryzias Family: Adrianichthyidae Order: Beloniformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|156552545|ref|XP_001600397.1| PREDICTED: protein arginine N-methyltransferase 5 isoform 1 [Nasonia vitripennis] gi|345494861|ref|XP_003427390.1| PREDICTED: protein arginine N-methyltransferase 5 isoform 2 [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 294/630 (46%), Positives = 399/630 (63%), Gaps = 31/630 (4%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQ----- 62
VS GL++ + +++ + + + +PLVHP + R F PE +
Sbjct: 7 VSCGLDFCSVPDLKDCLYVANCSKYHFVCIPLVHPNYKRE--------FISPEIKRSEPW 58
Query: 63 VQSLSSICPQ-WLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVS 121
+S +C W L+V + + +SK ++++ L QEL ++LG+ I +
Sbjct: 59 TRSDLILCSSDWSTLVVGKLSPHIY-VDSKIHSVAKNSEETLLQELALASHLGLVAITIK 117
Query: 122 L--DQPDFCNFARTLY--AHSEKNMSYTAWIKVPIRPVDTSMLRQQEE----EPSSQDTW 173
L + + N AR ++ + +N WI+VP+ +E+ + + TW
Sbjct: 118 LKGNIENNMNLARIMFDKLSTTQNFQAQVWIQVPMENPKKQAYSYREDIDLDKTEIESTW 177
Query: 174 RWWNMFRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVL 233
+WWN FR V +Y K +AL ++ D+ D+ E+TRWLGEP++C+ IPT VF TNK G+PVL
Sbjct: 178 QWWNQFRIVCDYDRKLIVALIVSNDLPDEDEITRWLGEPVKCLIIPTTVFITNKNGFPVL 237
Query: 234 NASLANFIKKILEKNLQVVIQGVNRHQSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYL 293
+ + I+K ++Q VI G NRHQ+ +HY YM +L K+ + P+ A+ +EDYL
Sbjct: 238 SKAHQAMIRKFCALDVQFVITGANRHQNIIHYYHYMDHLWKNWQPNGPIERFARGYEDYL 297
Query: 294 QFPLQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQA----DTVVTTIMVV 349
Q PLQPL ++L S TYEVFEKDPIKY YQ A++ AL D S ++A D++V +MVV
Sbjct: 298 QCPLQPLMDNLESGTYEVFEKDPIKYAEYQAAIESALKDIGSEKEARNEKDSIV--VMVV 355
Query: 350 GAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW 409
GAGRGPLV A+LNA+ A R+++VYAVEKN +AV+ L+ ++E W VTIVS DMR W
Sbjct: 356 GAGRGPLVRAALNASANAKRQIKVYAVEKNPNAVLTLQALQQEMWGDV-VTIVSSDMRDW 414
Query: 410 NAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQ 469
NAPEKADI+VSELLGSFGDNELSPECL QK+LK+DGISIPY+YTSYIAP+ S KL+ +
Sbjct: 415 NAPEKADILVSELLGSFGDNELSPECLDGVQKFLKDDGISIPYSYTSYIAPVQSSKLYNE 474
Query: 470 VKSSMIKEHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIA 529
VK K+ +H L FE PYVV+ +NKY+I PQP FTF HP++D DNSRY K F A
Sbjct: 475 VKGCRDKD-KHSLAHFEMPYVVHFQNKYDIDLPQPLFTFNHPNKDAKIDNSRYGKNIFKA 533
Query: 530 EQDSVLHGIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHF 589
EQD VLHG +GYF LYK+I +SI P T SP + SWFP+ FPI +P+ LK DEI HF
Sbjct: 534 EQDCVLHGFSGYFLAILYKNIKISIEPRTHSPRMFSWFPIFFPIKDPVNLKAGDEIVSHF 593
Query: 590 WRLCDNVKVWYEWLVTKPTPSPIYNLDGRS 619
WR C + VWYEW V KP P PI+N GRS
Sbjct: 594 WRCCSSKNVWYEWSVEKPVPIPIHNPCGRS 623
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|348539960|ref|XP_003457457.1| PREDICTED: protein arginine N-methyltransferase 5-like [Oreochromis niloticus] | Back alignment and taxonomy information |
|---|
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 285/627 (45%), Positives = 400/627 (63%), Gaps = 19/627 (3%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLS 67
VS G + I + ++A FD+ +PL HPRF R +++ + P AQ +S
Sbjct: 10 VSCGRDLNCVPEIADTLAAVAKLGFDFLCMPLFHPRFRREYELEPAK--SRPGAQTRSDL 67
Query: 68 SICPQ-WLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPD 126
+C + W LIV + + D +S+ R +++ L QEL + YLG+P ++ L P
Sbjct: 68 LLCGRDWNTLIVGKLSPWI-DADSEIETERRNSEAALTQELNFSAYLGLPVFMIPLKGPS 126
Query: 127 FCNFARTLYAH-SEKNMSYTAWIKVPIRPVDTSMLRQQEEEPSS--------QDTWRWWN 177
N AR L H + + WI+VP+ + E EP S + TW WWN
Sbjct: 127 NANLARVLLNHIHTGHHTSNFWIRVPLMASEDMREDLIENEPISCTDDTSIDEKTWSWWN 186
Query: 178 MFRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASL 237
FR++ +Y+ + LA+EI D+ D + +WLGEP++ +PT +F TNK G+PVL+ +
Sbjct: 187 SFRTLCDYNKRICLAVEIGPDMPSDTVIDKWLGEPIKAAILPTSIFLTNKKGFPVLSKAH 246
Query: 238 ANFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQF 295
I ++ + Q + G +RH + + Y+QY++YL ++ + + + A+ +EDYLQ
Sbjct: 247 QRVIFRLFKLEAQFIFTGTSRHTDKDFRSYLQYLEYLNQNRPAPNAYELFAKGYEDYLQS 306
Query: 296 PLQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGP 355
PLQPL ++L S TYEVFEKDPIKY +YQ+AV + LLDRV EQ DT V +MV+GAGRGP
Sbjct: 307 PLQPLMDNLESQTYEVFEKDPIKYSQYQQAVYKCLLDRVPEEQKDTNVQVLMVLGAGRGP 366
Query: 356 LVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKA 415
LV ASL AA++A+R++RVYAVEKN +AVV L+ + E+W VT+VS DMR W APEKA
Sbjct: 367 LVNASLRAARQADRRLRVYAVEKNPNAVVTLENWRFEEWGDQ-VTVVSCDMREWAAPEKA 425
Query: 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMI 475
DI+VSELLGSFGDNELSPECL AQ +LK+DG+SIP +YTSY+AP+ S KL+ +V+
Sbjct: 426 DIIVSELLGSFGDNELSPECLDGAQHFLKDDGVSIPCSYTSYLAPLSSSKLYNEVRGCRE 485
Query: 476 KEHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVL 535
++ + P FE PYVV N + +A P+PCFTF HPS D +N+RY F +SVL
Sbjct: 486 RD-KDPESHFETPYVVRLHNFHQLADPKPCFTFTHPSTDM--NNNRYQCLRFTVGCNSVL 542
Query: 536 HGIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDN 595
HG AGYF+T LYKD+ LSI P+T SPG+ SWFP+LFP+ +PI + +D++ V FWR +
Sbjct: 543 HGFAGYFETTLYKDVTLSIKPETHSPGMFSWFPILFPLKQPISISQDDDVTVRFWRCNNG 602
Query: 596 VKVWYEWLVTKPTPSPIYNLDGRSYKM 622
KVWYEW VT+P+ S I+N GRSY +
Sbjct: 603 KKVWYEWAVTEPSCSAIHNPAGRSYTI 629
|
Source: Oreochromis niloticus Species: Oreochromis niloticus Genus: Oreochromis Family: Cichlidae Order: Perciformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|171847328|gb|AAI61769.1| prmt5 protein [Xenopus (Silurana) tropicalis] | Back alignment and taxonomy information |
|---|
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 286/630 (45%), Positives = 400/630 (63%), Gaps = 22/630 (3%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARH--KDVDRYRVFGLPEAQVQS 65
VS G + + + ++A + FD+ +P+ HPRF R K+ + R P Q +S
Sbjct: 5 VSSGRDLGCVTEVADTLGAVAKQGFDFLCMPIFHPRFKREFFKEPAKSR----PGPQTRS 60
Query: 66 -LSSICPQWLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQ 124
L W LIV + +K +SK R ++ L QEL + YLG+P ++ L Q
Sbjct: 61 DLLLSGRDWNTLIVGKLSDWIKT-DSKVSGIRKTSEAALQQELNFSAYLGLPAFLIPLKQ 119
Query: 125 PDFCNFARTLYAHSEKNMSYTA-WIKVPIRP--------VDTSMLRQQEEEPSSQD-TWR 174
D N +R L H T W++VP+ ++ L Q EE+ ++ TW
Sbjct: 120 EDNSNLSRLLINHIHTGHHSTMFWMRVPLMAPNDLRDDIIENEPLSQSEEDNIDEERTWI 179
Query: 175 WWNMFRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLN 234
WW+ FRS+ +Y+ + LA+E+ D+ + H + RWLGEP++ F+PT +F TNK G+PVL+
Sbjct: 180 WWHNFRSLCDYNKRVALAIEVGADLPNGHIIDRWLGEPIKAAFLPTSIFLTNKKGFPVLS 239
Query: 235 ASLANFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDY 292
I ++ + +Q VI G + H + + Y+QY++YL ++ + M A+ +EDY
Sbjct: 240 KVHQRLIFRLFKLEVQFVISGAHHHSEKDFCSYLQYLEYLSQNRPPPNAYEMFAKGYEDY 299
Query: 293 LQFPLQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAG 352
LQ PLQPL ++L S TYEVFEKDP+KY +YQ+AV + LLDRV E+ +T + +MV+GAG
Sbjct: 300 LQSPLQPLMDNLESQTYEVFEKDPVKYSQYQQAVYKCLLDRVPEEEKETNIQVLMVLGAG 359
Query: 353 RGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP 412
RGPLV ASL AAK+A RK++VYAVEKN +AV+ L+ + E+W S VT+VS DMR W AP
Sbjct: 360 RGPLVNASLRAAKQAERKIKVYAVEKNPNAVITLEGWRYEEWG-SQVTVVSGDMREWKAP 418
Query: 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKS 472
EKADI+VSELLGSFGDNELSPECL AQ +LKEDG+SIP YTSY+API S KL+ +V++
Sbjct: 419 EKADIIVSELLGSFGDNELSPECLDGAQHFLKEDGVSIPSEYTSYLAPISSSKLYNEVRA 478
Query: 473 SMIKEHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQD 532
K+ + P +FE PYVV N + ++ P PCFTF+HP++D DN+RY + + +
Sbjct: 479 CREKD-RDPEAQFEMPYVVRLHNFHQLSDPLPCFTFLHPNKDAVIDNNRYICLQYRVDLN 537
Query: 533 SVLHGIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRL 592
+VLHG AGYFD LYKD+ LSI P++ SPG+ SWFP+LFPI +PI L+ D + V FWR
Sbjct: 538 TVLHGFAGYFDAVLYKDVTLSICPESHSPGMFSWFPILFPIKQPIPLREGDTVCVRFWRC 597
Query: 593 CDNVKVWYEWLVTKPTPSPIYNLDGRSYKM 622
+ KVWYEW VT P S I+N GRSY +
Sbjct: 598 NNGKKVWYEWAVTSPVCSAIHNPTGRSYTI 627
|
Source: Xenopus (Silurana) tropicalis Species: Xenopus (Silurana) tropicalis Genus: Xenopus Family: Pipidae Order: Anura Class: Amphibia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|118722330|ref|NP_001007184.2| protein arginine N-methyltransferase 5 [Danio rerio] gi|63102423|gb|AAH95362.1| Protein arginine methyltransferase 5 [Danio rerio] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 287/633 (45%), Positives = 394/633 (62%), Gaps = 19/633 (3%)
Query: 2 SQAKIAVSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEA 61
A VS G + + + ++A FD+ +PL HPRF R ++D + P A
Sbjct: 4 GSAGSRVSCGRDLSCVPEVADTLAAVAKLGFDFLCMPLFHPRFRRENELDPAK--SRPGA 61
Query: 62 QVQSLSSICPQ-WLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVV 120
Q +S +C + W LIV + ++ ERR+ L+ QEL + YLG+P ++
Sbjct: 62 QTRSDLLLCGRDWNTLIVGKLSPWIETDSELTTERRNSEAALV-QELNFCAYLGLPAFMI 120
Query: 121 SLDQPDFCNFARTLYAH-SEKNMSYTAWIKVPIRPVDTSMLRQQEEEPSSQ--------D 171
L P N AR L H + S WI+VP+ + + E EPS Q
Sbjct: 121 PLRGPHCANLARILLNHIHTGHHSCMFWIRVPLMAPEDTRENLIENEPSKQMDDGSNDEK 180
Query: 172 TWRWWNMFRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYP 231
TW WW+ FR++ +Y+ + LA+EI D+ D + +WLGEP++ +PT +F TNK G+P
Sbjct: 181 TWAWWHSFRTLCDYNKRICLAIEIGADLPSDTLIDKWLGEPIKAAILPTSIFLTNKKGFP 240
Query: 232 VLNASLANFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDF 289
VL+ + I ++ + Q + G NRH + Y+QY++YL ++ + + + A+ +
Sbjct: 241 VLSKAHQRIIFRLFKLEAQFIFTGQNRHSEKDLRSYLQYLEYLNQNRPAPNAYELFAKGY 300
Query: 290 EDYLQFPLQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVV 349
EDYLQ PLQPL ++L S TYEVFEKDPIKY +YQ+AV + LLDRV EQ +T V +MV+
Sbjct: 301 EDYLQSPLQPLMDNLESQTYEVFEKDPIKYSQYQQAVYRCLLDRVPEEQMETNVQVLMVL 360
Query: 350 GAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW 409
GAGRGPLV ASL AAK+A RK+RVYAVEKN +AVV L+ K E+W VT+VS DMR W
Sbjct: 361 GAGRGPLVNASLRAAKQAKRKLRVYAVEKNPNAVVTLENWKFEEWGDQ-VTVVSCDMREW 419
Query: 410 NAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQ 469
+PEKADI+VSELLGSFGDNELSPECL AQ +LK+DG+SIP +YTS++AP+ S KL+ +
Sbjct: 420 TSPEKADIIVSELLGSFGDNELSPECLDGAQHFLKDDGVSIPCSYTSFLAPLSSSKLYNE 479
Query: 470 VKSSMIKEHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIA 529
V+ ++ + P FE PYVV N + +A PQ CFTFVHP+ D +N+RY F
Sbjct: 480 VRGCRERD-KDPECHFETPYVVRLHNFHQLADPQACFTFVHPTTDM--NNNRYQCLRFPV 536
Query: 530 EQDSVLHGIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHF 589
+SVLHG AGYF+ LYK++ LSI P+T SPG+ SWFP+LFP+ +PI L D + V F
Sbjct: 537 GCNSVLHGFAGYFEATLYKEVTLSIKPETHSPGMFSWFPILFPLKQPIPLSCGDNVCVRF 596
Query: 590 WRLCDNVKVWYEWLVTKPTPSPIYNLDGRSYKM 622
WR + KVWYEW VT+P S I+N GRSY +
Sbjct: 597 WRCNNGKKVWYEWAVTEPVCSAIHNPAGRSYTI 629
|
Source: Danio rerio Species: Danio rerio Genus: Danio Family: Cyprinidae Order: Cypriniformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|229892828|ref|NP_001153565.1| protein arginine N-methyltransferase 5 [Sus scrofa] gi|197692948|gb|ACH71262.1| protein arginine methyltransferase 5 [Sus scrofa] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 281/626 (44%), Positives = 398/626 (63%), Gaps = 15/626 (2%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLS 67
VS G + I + ++A + FD+ +P+ HPRF R + + P+ + L
Sbjct: 14 VSSGRDLNCVPEIADTLGAVAKQGFDFLCMPVFHPRFKREFTQEPAKNRPGPQTRSDLLL 73
Query: 68 SICPQWLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDF 127
S W LIV + ++ +SK + R +++ + QEL + YLG+P ++ L+Q D
Sbjct: 74 S-GRDWNTLIVGKLSPWIRP-DSKVEKIRRNSEAAMLQELNFGAYLGLPAFLLPLNQEDN 131
Query: 128 CNFARTLYAH-SEKNMSYTAWIKVPIRP--------VDTSMLRQQEEEPSSQDTWRWWNM 178
N AR L H + S W++VP+ ++ + EE + TW WW+
Sbjct: 132 TNLARVLTNHIHTGHHSSMFWMRVPLVAPEDLRDDIIENAPASHTEEYSGEEKTWMWWHN 191
Query: 179 FRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLA 238
FR++ +Y + +ALEI D+ +H + RWLGEP++ +PT +F TNK G+PVL+
Sbjct: 192 FRTLCDYSKRIAVALEIGADLPSNHVIDRWLGEPIKAAILPTSIFLTNKKGFPVLSKMHQ 251
Query: 239 NFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFP 296
I ++L+ +Q +I G N H + + Y+QY++YL ++ + + A+ +EDYLQ P
Sbjct: 252 RLIFRLLKLEVQFIITGTNHHSEKEFCSYLQYLEYLSQNRPPPNAYELFAKGYEDYLQSP 311
Query: 297 LQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPL 356
LQPL ++L S TYEVFEKDPIKY +YQ+A+ + LLDRV E+ DT V +MV+GAGRGPL
Sbjct: 312 LQPLMDNLESQTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPL 371
Query: 357 VTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKAD 416
V ASL AAK+A+R++++YAVEKN +AVV L+ + E+W S VT+VS DMR W APEKAD
Sbjct: 372 VNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWG-SQVTVVSSDMREWVAPEKAD 430
Query: 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIK 476
I+VSELLGSF DNELSPECL AQ +LK+DG+SIP YTS++API S KL+ +V++ K
Sbjct: 431 IIVSELLGSFADNELSPECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNEVRACREK 490
Query: 477 EHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLH 536
+ + P +FE PYVV N + ++ PQPCFTF HP+ D DN+RY F E ++VLH
Sbjct: 491 D-RDPEAQFEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMVDNNRYCTLEFPVEVNTVLH 549
Query: 537 GIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNV 596
G AGYF+T LY+DI LSI P+T SPG+ SWFP+LFPI +PI ++ I V FWR ++
Sbjct: 550 GFAGYFETVLYQDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNSK 609
Query: 597 KVWYEWLVTKPTPSPIYNLDGRSYKM 622
KVWYEW VT P S I+N GRSY +
Sbjct: 610 KVWYEWAVTAPVCSAIHNPTGRSYTI 635
|
Source: Sus scrofa Species: Sus scrofa Genus: Sus Family: Suidae Order: Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 626 | ||||||
| UNIPROTKB|C3RZ98 | 637 | PRMT5 "Uncharacterized protein | 0.972 | 0.956 | 0.451 | 3.7e-142 | |
| UNIPROTKB|F1N443 | 637 | PRMT5 "Protein arginine N-meth | 0.972 | 0.956 | 0.450 | 4.8e-142 | |
| ZFIN|ZDB-GENE-030616-585 | 631 | prmt5 "protein arginine methyl | 0.966 | 0.958 | 0.458 | 6.1e-142 | |
| UNIPROTKB|E2R9J8 | 637 | PRMT5 "Uncharacterized protein | 0.972 | 0.956 | 0.450 | 7.8e-142 | |
| UNIPROTKB|O14744 | 637 | PRMT5 "Protein arginine N-meth | 0.972 | 0.956 | 0.451 | 7.8e-142 | |
| UNIPROTKB|Q4R5M3 | 637 | PRMT5 "Protein arginine N-meth | 0.972 | 0.956 | 0.450 | 2.1e-141 | |
| UNIPROTKB|Q5R698 | 637 | PRMT5 "Protein arginine N-meth | 0.971 | 0.954 | 0.452 | 2.6e-141 | |
| UNIPROTKB|A7YW45 | 637 | PRMT5 "Protein arginine N-meth | 0.972 | 0.956 | 0.448 | 5.5e-141 | |
| RGD|1309053 | 637 | Prmt5 "protein arginine methyl | 0.972 | 0.956 | 0.450 | 1.1e-140 | |
| MGI|MGI:1351645 | 637 | Prmt5 "protein arginine N-meth | 0.972 | 0.956 | 0.450 | 3e-140 |
| UNIPROTKB|C3RZ98 PRMT5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1390 (494.4 bits), Expect = 3.7e-142, P = 3.7e-142
Identities = 282/624 (45%), Positives = 397/624 (63%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLS 67
VS G + I + ++A + FD+ +P+ HPRF R + + P+ + L
Sbjct: 14 VSSGRDLNCVPEIADTLGAVAKQGFDFLCMPVFHPRFKREFTQEPAKNRPGPQTRSDLLL 73
Query: 68 SICPQWLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDF 127
S W LIV + ++ +SK + R +++ + QEL + YLG+P ++ L+Q D
Sbjct: 74 S-GRDWNTLIVGKLSPWIRP-DSKVEKIRRNSEAAMLQELNFGAYLGLPAFLLPLNQEDN 131
Query: 128 CNFARTLYAHSEK-NMSYTAWIKVP-IRP-------VDTSMLRQQEEEPSSQDTWRWWNM 178
N AR L H + S W++VP + P ++ + EE + TW WW+
Sbjct: 132 TNLARVLTNHIHTGHHSSMFWMRVPLVAPEDLRDDIIENAPASHTEEYSGEEKTWMWWHN 191
Query: 179 FRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLA 238
FR++ +Y + +ALEI D+ +H + RWLGEP++ +PT +F TNK G+PVL+
Sbjct: 192 FRTLCDYSKRIAVALEIGADLPSNHVIDRWLGEPIKAAILPTSIFLTNKKGFPVLSKMHQ 251
Query: 239 NFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFP 296
I ++L+ +Q +I G N H + + Y+QY++YL ++ + + A+ +EDYLQ P
Sbjct: 252 RLIFRLLKLEVQFIITGTNHHSEKEFCSYLQYLEYLSQNRPPPNAYELFAKGYEDYLQSP 311
Query: 297 LQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPL 356
LQPL ++L S TYEVFEKDPIKY +YQ+A+ + LLDRV E+ DT V +MV+GAGRGPL
Sbjct: 312 LQPLMDNLESQTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPL 371
Query: 357 VTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKAD 416
V ASL AAK+A+R++++YAVEKN +AVV L+ + E+W S VT+VS DMR W APEKAD
Sbjct: 372 VNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWG-SQVTVVSSDMREWVAPEKAD 430
Query: 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIK 476
I+VSELLGSF DNELSPECL AQ +LK+DG+SIP YTS++API S KL+ +V++ K
Sbjct: 431 IIVSELLGSFADNELSPECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNEVRACREK 490
Query: 477 EHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLH 536
+ P +FE PYVV N + ++ PQPCFTF HP+ D DN+RY F E ++VLH
Sbjct: 491 DRD-PEAQFEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMVDNNRYCTLEFPVEVNTVLH 549
Query: 537 GIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNV 596
G AGYF+T LY+DI LSI P+T SPG+ SWFP+LFPI +PI ++ I V FWR ++
Sbjct: 550 GFAGYFETVLYQDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNSK 609
Query: 597 KVWYEWLVTKPTPSPIYNLDGRSY 620
KVWYEW VT P S I+N GRSY
Sbjct: 610 KVWYEWAVTAPVCSAIHNPTGRSY 633
|
|
| UNIPROTKB|F1N443 PRMT5 "Protein arginine N-methyltransferase 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1389 (494.0 bits), Expect = 4.8e-142, P = 4.8e-142
Identities = 281/624 (45%), Positives = 397/624 (63%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLS 67
VS G + I + ++A + FD+ +P+ HPRF R + + P+ + L
Sbjct: 14 VSSGRDLNCVPEIADTLGAVAKQGFDFLCMPVFHPRFKREFTQEPAKSRPGPQTRSDLLL 73
Query: 68 SICPQWLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDF 127
S W LIV + ++ +SK + R +++ + QEL + YLG+P ++ L+Q D
Sbjct: 74 S-GRDWNTLIVGKLSPWIRP-DSKVEKIRRNSEAAMLQELNFGAYLGLPAFLLPLNQEDN 131
Query: 128 CNFARTLYAHSEK-NMSYTAWIKVP-IRP-------VDTSMLRQQEEEPSSQDTWRWWNM 178
N AR L H + S W++VP + P ++ + EE + TW WW+
Sbjct: 132 TNLARVLTNHIHTGHHSSMFWMRVPLVAPEDLRDDIIENAPTSHTEEYSGEEKTWMWWHN 191
Query: 179 FRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLA 238
FR++ +Y + +ALEI D+ +H + RWLGEP++ +PT +F TNK G+PVL+
Sbjct: 192 FRTLCDYSKRIAVALEIGADLPSNHVIDRWLGEPIKAAILPTSIFLTNKKGFPVLSKMHQ 251
Query: 239 NFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFP 296
I ++L+ +Q +I G N H + + Y+QY++YL ++ + + A+ +EDYLQ P
Sbjct: 252 RLIFRLLKLEVQFIITGTNHHSEKEFCSYLQYLEYLSQNRPPPNAYELFAKGYEDYLQSP 311
Query: 297 LQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPL 356
LQPL ++L S TYEVFEKDPIKY +YQ+A+ + LLDRV E+ DT + +MV+GAGRGPL
Sbjct: 312 LQPLMDNLESQTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNIQVLMVLGAGRGPL 371
Query: 357 VTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKAD 416
V ASL AAK+A+R++++YAVEKN +AVV L+ + E+W S VT+VS DMR W APEKAD
Sbjct: 372 VNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWG-SQVTVVSSDMREWVAPEKAD 430
Query: 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIK 476
I+VSELLGSF DNELSPECL AQ +LK+DG+SIP YTS++API S KL+ +V++ K
Sbjct: 431 IIVSELLGSFADNELSPECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNEVRACREK 490
Query: 477 EHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLH 536
+ P +FE PYVV N + ++ PQPCFTF HP+ D DN+RY F E ++VLH
Sbjct: 491 DRD-PEAQFEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLH 549
Query: 537 GIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNV 596
G AGYF+T LY+DI LSI P+T SPG+ SWFP+LFPI +PI ++ I V FWR ++
Sbjct: 550 GFAGYFETVLYQDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNSK 609
Query: 597 KVWYEWLVTKPTPSPIYNLDGRSY 620
KVWYEW VT P S I+N GRSY
Sbjct: 610 KVWYEWAVTAPVCSAIHNPTGRSY 633
|
|
| ZFIN|ZDB-GENE-030616-585 prmt5 "protein arginine methyltransferase 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1388 (493.7 bits), Expect = 6.1e-142, P = 6.1e-142
Identities = 287/626 (45%), Positives = 399/626 (63%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLS 67
VS G + + + ++A FD+ +PL HPRF R ++D + P AQ +S
Sbjct: 10 VSCGRDLSCVPEVADTLAAVAKLGFDFLCMPLFHPRFRRENELDPAK--SRPGAQTRSDL 67
Query: 68 SICPQ-WLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPD 126
+C + W LIV + ++ ERR+ L+ QEL + YLG+P ++ L P
Sbjct: 68 LLCGRDWNTLIVGKLSPWIETDSELTTERRNSEAALV-QELNFCAYLGLPAFMIPLRGPH 126
Query: 127 FCNFARTLYAHSEK-NMSYTAWIKVPIR-PVDT--SML-----RQQEEEPSSQDTWRWWN 177
N AR L H + S WI+VP+ P DT +++ +Q ++ + + TW WW+
Sbjct: 127 CANLARILLNHIHTGHHSCMFWIRVPLMAPEDTRENLIENEPSKQMDDGSNDEKTWAWWH 186
Query: 178 MFRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASL 237
FR++ +Y+ + LA+EI D+ D + +WLGEP++ +PT +F TNK G+PVL+ +
Sbjct: 187 SFRTLCDYNKRICLAIEIGADLPSDTLIDKWLGEPIKAAILPTSIFLTNKKGFPVLSKAH 246
Query: 238 ANFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQF 295
I ++ + Q + G NRH + Y+QY++YL ++ + + + A+ +EDYLQ
Sbjct: 247 QRIIFRLFKLEAQFIFTGQNRHSEKDLRSYLQYLEYLNQNRPAPNAYELFAKGYEDYLQS 306
Query: 296 PLQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGP 355
PLQPL ++L S TYEVFEKDPIKY +YQ+AV + LLDRV EQ +T V +MV+GAGRGP
Sbjct: 307 PLQPLMDNLESQTYEVFEKDPIKYSQYQQAVYRCLLDRVPEEQMETNVQVLMVLGAGRGP 366
Query: 356 LVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKA 415
LV ASL AAK+A RK+RVYAVEKN +AVV L+ K E+W VT+VS DMR W +PEKA
Sbjct: 367 LVNASLRAAKQAKRKLRVYAVEKNPNAVVTLENWKFEEWGDQ-VTVVSCDMREWTSPEKA 425
Query: 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMI 475
DI+VSELLGSFGDNELSPECL AQ +LK+DG+SIP +YTS++AP+ S KL+ +V+
Sbjct: 426 DIIVSELLGSFGDNELSPECLDGAQHFLKDDGVSIPCSYTSFLAPLSSSKLYNEVRGCRE 485
Query: 476 KEHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVL 535
++ + P FE PYVV N + +A PQ CFTFVHP+ D + N+RY F +SVL
Sbjct: 486 RD-KDPECHFETPYVVRLHNFHQLADPQACFTFVHPTTDMN--NNRYQCLRFPVGCNSVL 542
Query: 536 HGIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDN 595
HG AGYF+ LYK++ LSI P+T SPG+ SWFP+LFP+ +PI L D + V FWR C+N
Sbjct: 543 HGFAGYFEATLYKEVTLSIKPETHSPGMFSWFPILFPLKQPIPLSCGDNVCVRFWR-CNN 601
Query: 596 -VKVWYEWLVTKPTPSPIYNLDGRSY 620
KVWYEW VT+P S I+N GRSY
Sbjct: 602 GKKVWYEWAVTEPVCSAIHNPAGRSY 627
|
|
| UNIPROTKB|E2R9J8 PRMT5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1387 (493.3 bits), Expect = 7.8e-142, P = 7.8e-142
Identities = 281/624 (45%), Positives = 397/624 (63%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLS 67
VS G + I + ++A + FD+ +P+ HPRF R + + P+ + L
Sbjct: 14 VSSGRDLNCVPEIADTLGAVAKQGFDFLCMPVFHPRFKREFTQEPAKNRPGPQTRSDLLL 73
Query: 68 SICPQWLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDF 127
S W LIV + ++ +SK + R +++ + QEL + YLG+P ++ L+Q D
Sbjct: 74 S-GRDWNTLIVGKLSPWIRP-DSKVEKIRRNSEAAMLQELNFGAYLGLPAFLLPLNQEDN 131
Query: 128 CNFARTLYAHSEK-NMSYTAWIKVP-IRP-------VDTSMLRQQEEEPSSQDTWRWWNM 178
N AR L H + S W++VP + P ++ + EE + TW WW+
Sbjct: 132 TNLARVLTNHIHTGHHSSMFWMRVPLVAPEDLRDDIIENAPSTHTEEYSGEEKTWMWWHN 191
Query: 179 FRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLA 238
FR++ +Y + +ALEI D+ +H + RWLGEP++ +PT +F TNK G+PVL+
Sbjct: 192 FRTLCDYSKRIAVALEIGADLPSNHVIDRWLGEPIKAAILPTSIFLTNKKGFPVLSKMHQ 251
Query: 239 NFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFP 296
I ++L+ +Q +I G N H + + Y+QY++YL ++ + + A+ +EDYLQ P
Sbjct: 252 RLIFRLLKLEVQFIITGTNHHSEKEFCSYLQYLEYLSQNRPPPNAYELFAKGYEDYLQSP 311
Query: 297 LQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPL 356
LQPL ++L S TYEVFEKDPIKY +YQ+A+ + LLDRV E+ DT + +MV+GAGRGPL
Sbjct: 312 LQPLMDNLESQTYEVFEKDPIKYSQYQQAIYKCLLDRVPDEEKDTNIQVLMVLGAGRGPL 371
Query: 357 VTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKAD 416
V ASL AAK+A+R++++YAVEKN +AVV L+ + E+W S VT+VS DMR W APEKAD
Sbjct: 372 VNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWG-SQVTVVSSDMREWVAPEKAD 430
Query: 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIK 476
I+VSELLGSF DNELSPECL AQ +LK+DG+SIP YTS++API S KL+ +V++ K
Sbjct: 431 IIVSELLGSFADNELSPECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNEVRACREK 490
Query: 477 EHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLH 536
+ P +FE PYVV N + ++ PQPCFTF HP+ D DN+RY F E ++VLH
Sbjct: 491 DRD-PEAQFEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLH 549
Query: 537 GIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNV 596
G AGYF+T LY+DI LSI P+T SPG+ SWFP+LFPI +PI ++ I V FWR ++
Sbjct: 550 GFAGYFETVLYQDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNSK 609
Query: 597 KVWYEWLVTKPTPSPIYNLDGRSY 620
KVWYEW VT P S I+N GRSY
Sbjct: 610 KVWYEWAVTAPVCSAIHNPTGRSY 633
|
|
| UNIPROTKB|O14744 PRMT5 "Protein arginine N-methyltransferase 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1387 (493.3 bits), Expect = 7.8e-142, P = 7.8e-142
Identities = 282/624 (45%), Positives = 397/624 (63%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLS 67
VS G + I + ++A + FD+ +P+ HPRF R + + P+ + L
Sbjct: 14 VSSGRDLNCVPEIADTLGAVAKQGFDFLCMPVFHPRFKREFIQEPAKNRPGPQTRSDLLL 73
Query: 68 SICPQWLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDF 127
S W LIV + ++ +SK + R +++ + QEL + YLG+P ++ L+Q D
Sbjct: 74 S-GRDWNTLIVGKLSPWIRP-DSKVEKIRRNSEAAMLQELNFGAYLGLPAFLLPLNQEDN 131
Query: 128 CNFARTLYAHSEK-NMSYTAWIKVP-IRP-------VDTSMLRQQEEEPSSQDTWRWWNM 178
N AR L H + S W++VP + P ++ + EE + TW WW+
Sbjct: 132 TNLARVLTNHIHTGHHSSMFWMRVPLVAPEDLRDDIIENAPTTHTEEYSGEEKTWMWWHN 191
Query: 179 FRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLA 238
FR++ +Y + +ALEI D+ +H + RWLGEP++ +PT +F TNK G+PVL+
Sbjct: 192 FRTLCDYSKRIAVALEIGADLPSNHVIDRWLGEPIKAAILPTSIFLTNKKGFPVLSKMHQ 251
Query: 239 NFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFP 296
I ++L+ +Q +I G N H + + Y+QY++YL ++ + + A+ +EDYLQ P
Sbjct: 252 RLIFRLLKLEVQFIITGTNHHSEKEFCSYLQYLEYLSQNRPPPNAYELFAKGYEDYLQSP 311
Query: 297 LQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPL 356
LQPL ++L S TYEVFEKDPIKY +YQ+A+ + LLDRV E+ DT V +MV+GAGRGPL
Sbjct: 312 LQPLMDNLESQTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPL 371
Query: 357 VTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKAD 416
V ASL AAK+A+R++++YAVEKN +AVV L+ + E+W S VT+VS DMR W APEKAD
Sbjct: 372 VNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWG-SQVTVVSSDMREWVAPEKAD 430
Query: 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIK 476
I+VSELLGSF DNELSPECL AQ +LK+DG+SIP YTS++API S KL+ +V++ K
Sbjct: 431 IIVSELLGSFADNELSPECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNEVRACREK 490
Query: 477 EHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLH 536
+ P +FE PYVV N + ++ PQPCFTF HP+ D DN+RY F E ++VLH
Sbjct: 491 DRD-PEAQFEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLH 549
Query: 537 GIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNV 596
G AGYF+T LY+DI LSI P+T SPG+ SWFP+LFPI +PI ++ I V FWR ++
Sbjct: 550 GFAGYFETVLYQDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNSK 609
Query: 597 KVWYEWLVTKPTPSPIYNLDGRSY 620
KVWYEW VT P S I+N GRSY
Sbjct: 610 KVWYEWAVTAPVCSAIHNPTGRSY 633
|
|
| UNIPROTKB|Q4R5M3 PRMT5 "Protein arginine N-methyltransferase 5" [Macaca fascicularis (taxid:9541)] | Back alignment and assigned GO terms |
|---|
Score = 1383 (491.9 bits), Expect = 2.1e-141, P = 2.1e-141
Identities = 281/624 (45%), Positives = 396/624 (63%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLS 67
VS G + I + ++A + FD+ +P+ HPRF R + + P+ + L
Sbjct: 14 VSSGRDLNCVPEIADTLGAVAKQGFDFLCMPVFHPRFKRESIQEPAKNRPGPQTRSDLLL 73
Query: 68 SICPQWLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDF 127
S W LIV + ++ +SK + R +++ + QEL + YLG+P ++ L+Q D
Sbjct: 74 S-GRDWNTLIVGKLSPWIRP-DSKVEKIRRNSEAAMLQELNFGAYLGLPAFLLPLNQEDN 131
Query: 128 CNFARTLYAHSEK-NMSYTAWIKVP-IRP-------VDTSMLRQQEEEPSSQDTWRWWNM 178
N AR L H + S W++VP + P ++ + EE + TW WW+
Sbjct: 132 TNLARVLTNHIHTGHHSSMFWMRVPLVAPEDLRDDIIENAPTTHTEEYSGEEKTWMWWHN 191
Query: 179 FRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLA 238
FR++ +Y + +ALEI D+ +H + RWLGEP++ +PT +F TNK G+PVL+
Sbjct: 192 FRTLCDYSKRIAVALEIGADLPSNHVIDRWLGEPIKAAILPTSIFLTNKKGFPVLSKMHQ 251
Query: 239 NFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFP 296
I ++L+ +Q +I G N H + + Y+QY++YL ++ + + A+ +EDYLQ P
Sbjct: 252 RLIFRLLKLEVQFIITGTNHHSEKEFCSYLQYLEYLSQNRPPPNAYELFAKGYEDYLQSP 311
Query: 297 LQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPL 356
LQPL ++L S TYEVFEKDPIKY +YQ+A+ + LL RV E+ DT V +MV+GAGRGPL
Sbjct: 312 LQPLMDNLESQTYEVFEKDPIKYSQYQQAIYKCLLGRVPEEEKDTNVQVLMVLGAGRGPL 371
Query: 357 VTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKAD 416
V ASL AAK+A+R++++YAVEKN +AVV L+ + E+W S VT+VS DMR W APEKAD
Sbjct: 372 VNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWG-SQVTVVSSDMREWVAPEKAD 430
Query: 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIK 476
I+VSELLGSF DNELSPECL AQ +LK+DG+SIP YTS++API S KL+ +V++ K
Sbjct: 431 IIVSELLGSFADNELSPECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNEVRACREK 490
Query: 477 EHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLH 536
+ P +FE PYVV N + ++ PQPCFTF HP+ D DN+RY F E ++VLH
Sbjct: 491 DRD-PEAQFEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLH 549
Query: 537 GIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNV 596
G AGYF+T LY+DI LSI P+T SPG+ SWFP+LFPI +PI ++ I V FWR ++
Sbjct: 550 GFAGYFETVLYQDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNSK 609
Query: 597 KVWYEWLVTKPTPSPIYNLDGRSY 620
KVWYEW VT P S I+N GRSY
Sbjct: 610 KVWYEWAVTAPVCSAIHNPTGRSY 633
|
|
| UNIPROTKB|Q5R698 PRMT5 "Protein arginine N-methyltransferase 5" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 1382 (491.5 bits), Expect = 2.6e-141, P = 2.6e-141
Identities = 283/625 (45%), Positives = 395/625 (63%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLS 67
VS G + I + ++A + FD+ +P+ HPRF R + + P+ + L
Sbjct: 14 VSSGRDLNCVPEIADTLGAVAKQGFDFLCMPVFHPRFKREFIQEPAKNRPGPQTRSDLLL 73
Query: 68 SICPQWLKLIVCDIQCKLK-DFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPD 126
S W LIV + ++ D E + + R A L QEL + YLG+P ++ L+Q D
Sbjct: 74 S-GRDWNTLIVGKLSPWIRPDSEVEKIRRNSEAAML--QELNFGAYLGLPAFLLPLNQED 130
Query: 127 FCNFARTLYAHSEK-NMSYTAWIKVP-IRP-------VDTSMLRQQEEEPSSQDTWRWWN 177
N AR L H + S W++VP + P ++ + +E + TW WW+
Sbjct: 131 NTNLARVLTNHIHTGHHSSMFWMRVPLVAPEDLRDDIIENAPTTHTQEYSGEEKTWIWWH 190
Query: 178 MFRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASL 237
FR++ +Y + +ALEI D+ +H + RWLGEP++ +PT +F TNK G+PVL+
Sbjct: 191 NFRTLCDYSKRIAVALEIGADLPSNHVIDRWLGEPIKAAILPTSIFLTNKKGFPVLSKMH 250
Query: 238 ANFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQF 295
I ++L+ +Q +I G N H + + Y+QY++YL ++ + + A+ +EDYLQ
Sbjct: 251 QRLIFRLLKLEVQFIITGTNHHSEKEFCSYLQYLEYLSQNRPPPNAYELFAKGYEDYLQS 310
Query: 296 PLQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGP 355
PLQPL ++L S TYEVFEKDPIKY +YQ+A+ + LLDRV E+ DT V +MV+GAGRGP
Sbjct: 311 PLQPLMDNLESQTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGP 370
Query: 356 LVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKA 415
LV ASL AAK+A+R++++YAVEKN +AVV L+ + E+W S VT+VS DMR W APEKA
Sbjct: 371 LVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWG-SQVTVVSSDMREWVAPEKA 429
Query: 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMI 475
DI+VSELLGSF DNELSPECL AQ +LK+DG+SIP YTS++API S KL+ +V++
Sbjct: 430 DIIVSELLGSFADNELSPECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNEVRACRE 489
Query: 476 KEHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVL 535
K+ P +FE PYVV N + ++ PQPCFTF HP+ D DN+RY F E ++VL
Sbjct: 490 KDRD-PEAQFEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVL 548
Query: 536 HGIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDN 595
HG AGYF+T LY+DI LSI P+T SPG+ SWFP+LFPI +PI ++ I V FWR ++
Sbjct: 549 HGFAGYFETVLYQDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNS 608
Query: 596 VKVWYEWLVTKPTPSPIYNLDGRSY 620
KVWYEW VT P S I+N GRSY
Sbjct: 609 KKVWYEWAVTAPVCSAIHNPTGRSY 633
|
|
| UNIPROTKB|A7YW45 PRMT5 "Protein arginine N-methyltransferase 5" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1379 (490.5 bits), Expect = 5.5e-141, P = 5.5e-141
Identities = 280/624 (44%), Positives = 396/624 (63%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLS 67
VS G + I + ++A + FD+ +P+ HPRF R + + P+ + L
Sbjct: 14 VSSGRDLNCVPEIADTLGAVAKQGFDFLCMPVFHPRFKREFTQEPAKSRPGPQTRSDLLL 73
Query: 68 SICPQWLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDF 127
S W LIV + ++ +SK + R +++ + QEL + YLG+P ++ L+Q D
Sbjct: 74 S-GRDWNTLIVGKLSPWIRP-DSKVEKIRRNSEAAMLQELNFGAYLGLPAFLLPLNQEDN 131
Query: 128 CNFARTLYAHSEK-NMSYTAWIKVP-IRP-------VDTSMLRQQEEEPSSQDTWRWWNM 178
N AR L H + S W++VP + P ++ + EE + TW WW+
Sbjct: 132 TNLARVLTNHIHTGHHSSMFWMRVPLVAPEDLRDDIIENAPTSHTEEYSGEEKTWMWWHN 191
Query: 179 FRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLA 238
FR++ +Y + +ALEI D+ +H + RWLGEP++ +PT +F TNK G+PVL+
Sbjct: 192 FRTLCDYSKRIAVALEIGADLPSNHVIDRWLGEPIKAAILPTSIFLTNKKGFPVLSKMHQ 251
Query: 239 NFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFP 296
I ++L+ +Q +I G N H + + Y+QY++YL ++ + + A+ +EDYLQ P
Sbjct: 252 RLIFRLLKLEVQFIITGTNHHSEKEFCSYLQYLEYLSQNRPPPNAYELFAKGYEDYLQSP 311
Query: 297 LQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPL 356
LQPL ++L S TYEVFEKDPIKY +YQ+A+ + LLDRV E+ DT + +MV+GAGRGPL
Sbjct: 312 LQPLMDNLESQTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNIQVLMVLGAGRGPL 371
Query: 357 VTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKAD 416
V ASL AAK+A+R++++YAVEKN +AVV L+ + E+W S VT+VS DMR W APEKAD
Sbjct: 372 VNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWG-SQVTVVSSDMREWVAPEKAD 430
Query: 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIK 476
I+VSELLGSF DNELSPE L AQ +LK+DG+SIP YTS++API S KL+ +V++ K
Sbjct: 431 IIVSELLGSFADNELSPESLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNEVRACREK 490
Query: 477 EHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLH 536
+ P +FE PYVV N + ++ PQPCFTF HP+ D DN+RY F E ++VLH
Sbjct: 491 DRD-PEAQFEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLH 549
Query: 537 GIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNV 596
G AGYF+T LY+DI LSI P+T SPG+ SWFP+LFPI +PI ++ I V FWR ++
Sbjct: 550 GFAGYFETVLYQDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNSK 609
Query: 597 KVWYEWLVTKPTPSPIYNLDGRSY 620
KVWYEW VT P S I+N GRSY
Sbjct: 610 KVWYEWAVTAPVCSAIHNPTGRSY 633
|
|
| RGD|1309053 Prmt5 "protein arginine methyltransferase 5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1376 (489.4 bits), Expect = 1.1e-140, P = 1.1e-140
Identities = 281/624 (45%), Positives = 392/624 (62%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLS 67
VS G + I + ++A + FD+ +P+ HPRF R + + P+ + L
Sbjct: 14 VSSGRDLNCVPEIADTLGAVAKQGFDFLCMPVFHPRFKREFIQEPAKNRPGPQTRSDLLL 73
Query: 68 SICPQWLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDF 127
S W LIV + + +SK + R +++ + QEL + YLG+P ++ L+Q D
Sbjct: 74 S-GRDWNTLIVGKLSPWIHP-DSKVEKIRRNSEAAMLQELNFGAYLGLPAFLLPLNQEDN 131
Query: 128 CNFARTLYAHSEK-NMSYTAWIKVP-IRP-------VDTSMLRQQEEEPSSQDTWRWWNM 178
N AR L H + S W++VP + P ++ + EE + TW WW+
Sbjct: 132 TNLARVLTNHIHTGHHSSMFWMRVPLVAPEDLRDDVIENAPTAHTEEYSGEEKTWLWWHN 191
Query: 179 FRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLA 238
FR++ +Y + +ALEI D+ H + RWLGEP++ +PT +F TNK G+PVL+
Sbjct: 192 FRTLCDYSKRIAVALEIGADLPSSHVIDRWLGEPIKAAILPTSIFLTNKKGFPVLSKMQQ 251
Query: 239 NFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFP 296
I ++L+ +Q +I G N H + + Y+QY++YL ++ + + A+ +EDYLQ P
Sbjct: 252 RLIFRLLKLEVQFIITGTNHHSEKEFCSYLQYLEYLSQNRPPPNAYELFAKGYEDYLQSP 311
Query: 297 LQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPL 356
LQPL ++L S TYEVFEKDPIKY +YQ+A+ + LLDRV E+ +T V +MV+GAGRGPL
Sbjct: 312 LQPLMDNLESQTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKETNVQVLMVLGAGRGPL 371
Query: 357 VTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKAD 416
V ASL AAK+A R++R+YAVEKN +AVV L+ + E+W S VT+VS DMR W APEKAD
Sbjct: 372 VNASLRAAKQAERRIRLYAVEKNPNAVVTLENWQFEEWG-SQVTVVSSDMREWVAPEKAD 430
Query: 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIK 476
I+VSELLGSF DNELSPECL AQ +LK+DG+SIP YTS++API S KL+ +V++ K
Sbjct: 431 IIVSELLGSFADNELSPECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNEVRACREK 490
Query: 477 EHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLH 536
+ P +FE PYVV N + ++ PQPCFTF HP+ D DN+RY F E ++VLH
Sbjct: 491 DRD-PEAQFEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLH 549
Query: 537 GIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNV 596
G AGYF+T LY+DI LSI P+T SPG+ SWFP+ FPI +PI + I V FWR ++
Sbjct: 550 GFAGYFETVLYRDITLSIRPETHSPGMFSWFPIFFPIKQPITVHEGQNICVRFWRCSNSK 609
Query: 597 KVWYEWLVTKPTPSPIYNLDGRSY 620
KVWYEW VT P S I+N GRSY
Sbjct: 610 KVWYEWAVTAPVCSSIHNPTGRSY 633
|
|
| MGI|MGI:1351645 Prmt5 "protein arginine N-methyltransferase 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1372 (488.0 bits), Expect = 3.0e-140, P = 3.0e-140
Identities = 281/624 (45%), Positives = 392/624 (62%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLS 67
VS G + I + ++A + FD+ +P+ HPRF R + + P+ + L
Sbjct: 14 VSSGRDLNCVPEIADTLGAVAKQGFDFLCMPVFHPRFKREFIQEPAKNRPGPQTRSDLLL 73
Query: 68 SICPQWLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDF 127
S W LIV + + +SK + R +++ + QEL + YLG+P ++ L+Q D
Sbjct: 74 S-GRDWNTLIVGKLSPWIHP-DSKVEKIRRNSEAAMLQELNFGAYLGLPAFLLPLNQEDN 131
Query: 128 CNFARTLYAHSEK-NMSYTAWIKVP-IRPVD-------TSMLRQQEEEPSSQDTWRWWNM 178
N AR L H + S W++VP + P D + EE + TW WW+
Sbjct: 132 TNLARVLTNHIHTGHHSSMFWMRVPLVAPEDLRDDVIANAPTTHTEEYSGEEKTWMWWHN 191
Query: 179 FRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLA 238
FR++ +Y + +ALEI D+ +H + RWLGEP++ +PT +F TNK G+PVL+
Sbjct: 192 FRTLCDYSKRIAVALEIGADLPSNHVIDRWLGEPIKAAILPTSIFLTNKKGFPVLSKVQQ 251
Query: 239 NFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFP 296
I ++L+ +Q +I G N H + + Y+QY++YL ++ + + A+ +EDYLQ P
Sbjct: 252 RLIFRLLKLEVQFIITGTNHHSEKEFCSYLQYLEYLSQNRPPPNAYELFAKGYEDYLQSP 311
Query: 297 LQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPL 356
LQPL ++L S TYEVFEKDPIKY +YQ+A+ + LLDRV E+ +T V +MV+GAGRGPL
Sbjct: 312 LQPLMDNLESQTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKETNVQVLMVLGAGRGPL 371
Query: 357 VTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKAD 416
V ASL AAK+A R++R+YAVEKN +AVV L+ + E+W S VT+VS DMR W APEKAD
Sbjct: 372 VNASLRAAKQAERRIRLYAVEKNPNAVVTLENWQFEEWG-SQVTVVSSDMREWVAPEKAD 430
Query: 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIK 476
I+VSELLGSF DNELSPECL AQ +LK+DG+SIP YTS++API S KL+ +V++ K
Sbjct: 431 IIVSELLGSFADNELSPECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNEVRACREK 490
Query: 477 EHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLH 536
+ P +FE PYVV N + ++ P+PCFTF HP+ D DN+RY F E ++VLH
Sbjct: 491 DRD-PEAQFEMPYVVRLHNFHQLSAPKPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLH 549
Query: 537 GIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNV 596
G AGYF+T LY+DI LSI P+T SPG+ SWFP+ FPI +PI + I V FWR ++
Sbjct: 550 GFAGYFETVLYRDITLSIRPETHSPGMFSWFPIFFPIKQPITVHEGQNICVRFWRCSNSK 609
Query: 597 KVWYEWLVTKPTPSPIYNLDGRSY 620
KVWYEW VT P S I+N GRSY
Sbjct: 610 KVWYEWAVTAPVCSSIHNPTGRSY 633
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q8GWT4 | ANM15_ARATH | 2, ., 1, ., 1, ., 1, 2, 5 | 0.4060 | 0.9217 | 0.8987 | yes | N/A |
| A7YW45 | ANM5_BOVIN | 2, ., 1, ., 1, ., 1, 2, 5 | 0.4456 | 0.9760 | 0.9591 | yes | N/A |
| Q6YXZ7 | ANM5_ORYSJ | 2, ., 1, ., 1, ., 1, 2, 5 | 0.3921 | 0.9488 | 0.9152 | yes | N/A |
| Q8CIG8 | ANM5_MOUSE | 2, ., 1, ., 1, ., 1, 2, 5 | 0.4488 | 0.9760 | 0.9591 | yes | N/A |
| Q9U6Y9 | ANM5_DROME | 2, ., 1, ., 1, ., - | 0.4081 | 0.8242 | 0.8459 | yes | N/A |
| P46580 | ANM5_CAEEL | 2, ., 1, ., 1, ., 1, 2, 5 | 0.3294 | 0.8178 | 0.6975 | yes | N/A |
| P78963 | SKB1_SCHPO | 2, ., 1, ., 1, ., - | 0.3455 | 0.8370 | 0.8124 | yes | N/A |
| Q54KI3 | ANM5_DICDI | 2, ., 1, ., 1, ., 1, 2, 5 | 0.3862 | 0.9616 | 0.9376 | yes | N/A |
| O14744 | ANM5_HUMAN | 2, ., 1, ., 1, ., 1, 2, 5 | 0.4488 | 0.9760 | 0.9591 | yes | N/A |
| Q5R698 | ANM5_PONAB | 2, ., 1, ., 1, ., 1, 2, 5 | 0.4497 | 0.9744 | 0.9576 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 626 | |||
| pfam05185 | 445 | pfam05185, PRMT5, PRMT5 arginine-N-methyltransfera | 0.0 | |
| PTZ00357 | 1072 | PTZ00357, PTZ00357, methyltransferase; Provisional | 2e-39 | |
| pfam00291 | 295 | pfam00291, PALP, Pyridoxal-phosphate dependent enz | 0.001 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 0.003 |
| >gnl|CDD|218484 pfam05185, PRMT5, PRMT5 arginine-N-methyltransferase | Back alignment and domain information |
|---|
Score = 591 bits (1526), Expect = 0.0
Identities = 209/449 (46%), Positives = 282/449 (62%), Gaps = 20/449 (4%)
Query: 171 DTWRWWNMFRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGY 230
TW WN R++ NY ++ALE+ D+ L RWL EP++ + + + +F TN+ GY
Sbjct: 4 STWELWNTIRTLCNYSPNLKVALELPRDLPSKEVLERWLAEPVKALILSSSIFLTNQKGY 63
Query: 231 PVLNASLANFIKKILEKN-LQVVIQG----------VNRHQSYLHYVQYMQYLKKSSHSD 279
PVL+ + + + N +++ G Y++Y++YL K
Sbjct: 64 PVLSKAHQALLTRFFRLNNPIILLLGELGPILHGMEKESDHDLTPYLKYLKYLLKKQPPL 123
Query: 280 DPLSMAAQDFEDYLQFPLQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQA 339
+EDYLQ PLQPL+++L S TYEVFEKDP+KY +Y+ A+++ALLDRV ++
Sbjct: 124 SEQEKFESGYEDYLQAPLQPLSDNLESQTYEVFEKDPVKYDQYERAIRKALLDRVPEKKK 183
Query: 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL-KYKKEEQWAQSD 398
+ I+VVGAGRGPLV +L AA+E RKV++YAVEKN +AVV L K E+W
Sbjct: 184 TSSTLVILVVGAGRGPLVDRALKAAEETGRKVKIYAVEKNPNAVVTLQKRVNFEEWGDK- 242
Query: 399 VTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYI 458
VTI+S DMR W PEKADI+VSELLGSFGDNELSPECL AQ++LK DGISIP +YTSY+
Sbjct: 243 VTIISSDMREWKGPEKADILVSELLGSFGDNELSPECLDGAQRFLKPDGISIPQSYTSYL 302
Query: 459 APIMSHKLFTQVKSSMIKEHQHPLYRFEQPYVVYQRNKYNIAP-PQPCFTFVHPSEDKDP 517
API S KL+ +VKS + FE PYVV ++ Y ++ Q C++F HP+ D++
Sbjct: 303 APISSPKLYQKVKSMSDPKA------FETPYVVRLKSYYKLSEEVQECWSFEHPNRDENS 356
Query: 518 DNSRYTKATFIAEQDSVLHGIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPI 577
N RY F + D VLHG AGYFD LYKD+ LSI P+T +P +ISWFP+ FP+ +P+
Sbjct: 357 HNERYKTLEFKIKHDGVLHGFAGYFDAVLYKDVELSILPNTHTPNMISWFPIFFPLKKPV 416
Query: 578 QLKTNDEIEVHFWRLCDNVKVWYEWLVTK 606
+K E+ VH WR DN KVWYEW V
Sbjct: 417 YVKKGQELSVHIWRKTDNRKVWYEWSVES 445
|
The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes. Length = 445 |
| >gnl|CDD|173550 PTZ00357, PTZ00357, methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (392), Expect = 2e-39
Identities = 118/426 (27%), Positives = 177/426 (41%), Gaps = 99/426 (23%)
Query: 279 DDPLSMAAQDFEDYLQFPLQPLANDLSSFTYEVFEKDPIKYIRYQEAV------------ 326
++P FE LQ PLQPL++ LSS YEVFE+D KY +Y+EAV
Sbjct: 612 EEPTRDVFASFEGQLQLPLQPLSHHLSSGVYEVFERDARKYRQYREAVFHYVRDWYAAGA 671
Query: 327 -------------QQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRV 373
+ ++ RV D ++++G GRGPL+ L+A ++R+
Sbjct: 672 EQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHAVSALGVRLRI 731
Query: 374 YAVEKNM--SAVVGLKYKKEEQWAQSDVT------IVSEDMRTWNAPEK----------- 414
+A+EKN+ +A +++ + +W Q T ++ D RT +
Sbjct: 732 FAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFG 791
Query: 415 -ADIMVSELLGSFGDNELSPECLYAAQKYLKE----DGIS-------IPYNYTSYIAPIM 462
D++VSELLGS GDNELSPECL A L++ GI+ IP YT+++AP+M
Sbjct: 792 LCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLM 851
Query: 463 SHKLFTQVKSSMIKE--------HQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSED 514
S V + +K H H V +APPQPC+TF H
Sbjct: 852 SATFDAAVTEAAVKGLTVPPPGCHDHHAALNHTLLVTNLSRAVTLAPPQPCWTFEHRFHG 911
Query: 515 KDPDNSRYTKATFIAEQDSVLH----------------GIAGYFDTFLYKDIN-----LS 553
++ + + + L G+AGYF LY+ ++
Sbjct: 912 GSDNDYKGDRGAMKRREPVSLERAASLLFEVPPCGRCCGLAGYFSAVLYQSATAPATIIA 971
Query: 554 IHPDTLSPGLISWFPVLFPIHEPIQLKTND------------EIEVHFWRLC--DNVKVW 599
P + + SWFP +F + Q + D I V R +VW
Sbjct: 972 TAPVERTEDMYSWFPCVFALEPAQQAELQDVGQAAAEESRMVAIRVQLDRRTSLAEQRVW 1031
Query: 600 YEWLVT 605
YEW VT
Sbjct: 1032 YEWSVT 1037
|
Length = 1072 |
| >gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 6/116 (5%)
Query: 337 EQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQ 396
EQ +VV G G L KE +RV VE + + + + +
Sbjct: 153 EQLGQGDPDAVVVPVGGGGLAAGIARGLKELGPGIRVIGVEPEGAPALA-RSLEAGRRVP 211
Query: 397 SDVTIVSEDMRTWNAPEKADIMVSELLGSFG--DNELSPECLYAAQKYLKEDGISI 450
TI E A ++ E +G +E E L A + + +GI +
Sbjct: 212 KPTTIAGLGPGIPLDGELALELIDEYVGDVYAVSDE---EALEAIRLLARREGILV 264
|
Members of this family are all pyridoxal-phosphate dependent enzymes. This family includes: serine dehydratase EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16, tryptophan synthase beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8 P11096, cystathionine beta-synthase EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4. Length = 295 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.003
Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 12/112 (10%)
Query: 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSE 404
++ GAG G A L AA A RV VE + A + + V +V
Sbjct: 3 RVLDPGAGSG----AFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVG 58
Query: 405 DMRT--WNAPEKADIMV-----SELLGSFGDN-ELSPECLYAAQKYLKEDGI 448
D R D+++ G DN +L L AA + LK G+
Sbjct: 59 DARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGV 110
|
This family contains methyltransferase domains. Length = 117 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 626 | |||
| KOG0822|consensus | 649 | 100.0 | ||
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 100.0 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 100.0 | |
| KOG1499|consensus | 346 | 100.0 | ||
| KOG1500|consensus | 517 | 100.0 | ||
| KOG1501|consensus | 636 | 99.87 | ||
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 99.63 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.38 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.35 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.32 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.25 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.25 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.24 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.21 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.2 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.19 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.19 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.18 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.15 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.14 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.14 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.13 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.13 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.1 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.1 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.09 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.09 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.08 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.08 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.08 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.05 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.05 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.05 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.02 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.01 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.0 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.98 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.97 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.96 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.96 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.96 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.96 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.95 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.95 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.94 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.93 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.93 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.91 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 98.91 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.9 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.9 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.9 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.9 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.89 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.88 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.88 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.87 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.87 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.86 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.86 | |
| KOG1270|consensus | 282 | 98.86 | ||
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.85 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.85 | |
| KOG1540|consensus | 296 | 98.85 | ||
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.84 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.83 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.83 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.81 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.8 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.8 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.8 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.79 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.78 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.77 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.77 | |
| KOG4300|consensus | 252 | 98.76 | ||
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.76 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.76 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.75 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.75 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.75 | |
| PLN02366 | 308 | spermidine synthase | 98.74 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.74 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.74 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.73 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.73 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.73 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.72 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.71 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.7 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.7 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.69 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.69 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.69 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.68 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.68 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.67 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.67 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.67 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.67 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.66 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.66 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.65 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.64 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.64 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.64 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.63 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.63 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.62 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.62 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.62 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.61 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.61 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.61 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.61 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.6 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.6 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.6 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.58 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.58 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.58 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.55 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.55 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.55 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.54 | |
| KOG2904|consensus | 328 | 98.54 | ||
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.53 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.52 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.51 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.51 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.51 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.5 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.49 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.49 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.47 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.47 | |
| PLN02476 | 278 | O-methyltransferase | 98.46 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.46 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.44 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.44 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.43 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.42 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.41 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.4 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.4 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.39 | |
| PLN02823 | 336 | spermine synthase | 98.37 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.35 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.32 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.32 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.31 | |
| KOG1271|consensus | 227 | 98.3 | ||
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.29 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.22 | |
| KOG0820|consensus | 315 | 98.21 | ||
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.21 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.19 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.19 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.19 | |
| KOG3191|consensus | 209 | 98.17 | ||
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.15 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.14 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.14 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.13 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.09 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.07 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.06 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.05 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.05 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.04 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.03 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.02 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.02 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.01 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.01 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.01 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.97 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.95 | |
| KOG2361|consensus | 264 | 97.93 | ||
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 97.91 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 97.9 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.89 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.87 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.82 | |
| KOG3010|consensus | 261 | 97.8 | ||
| KOG3420|consensus | 185 | 97.79 | ||
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.78 | |
| KOG3045|consensus | 325 | 97.78 | ||
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.77 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.71 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.69 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 97.69 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.69 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 97.67 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.65 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.63 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.62 | |
| KOG2899|consensus | 288 | 97.58 | ||
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.56 | |
| KOG1661|consensus | 237 | 97.54 | ||
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.53 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.52 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.52 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.51 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.49 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.48 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.41 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.41 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.37 | |
| KOG2940|consensus | 325 | 97.35 | ||
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.32 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.29 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.26 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.24 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.23 | |
| KOG1663|consensus | 237 | 97.21 | ||
| KOG1975|consensus | 389 | 97.2 | ||
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 97.19 | |
| PTZ00372 | 413 | endonuclease 4-like protein; Provisional | 97.16 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.12 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.09 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.08 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.07 | |
| KOG2915|consensus | 314 | 97.04 | ||
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.04 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.02 | |
| KOG1709|consensus | 271 | 96.97 | ||
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 96.92 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.91 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.89 | |
| KOG1541|consensus | 270 | 96.89 | ||
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 96.86 | |
| KOG1501|consensus | 636 | 96.84 | ||
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 96.83 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.82 | |
| KOG2187|consensus | 534 | 96.78 | ||
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 96.73 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.7 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.63 | |
| COG0648 | 280 | Nfo Endonuclease IV [DNA replication, recombinatio | 96.37 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.18 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 96.16 | |
| TIGR00587 | 274 | nfo apurinic endonuclease (APN1). All proteins in | 96.15 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 95.97 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 95.79 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.77 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.71 | |
| KOG4589|consensus | 232 | 95.6 | ||
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 95.54 | |
| PHA01634 | 156 | hypothetical protein | 95.51 | |
| KOG1227|consensus | 351 | 95.43 | ||
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 95.34 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 95.32 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 95.1 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 95.06 | |
| KOG3178|consensus | 342 | 95.05 | ||
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 94.69 | |
| KOG3987|consensus | 288 | 94.65 | ||
| KOG1562|consensus | 337 | 94.57 | ||
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 94.44 | |
| KOG2730|consensus | 263 | 93.91 | ||
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 93.36 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.3 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 93.29 | |
| KOG1596|consensus | 317 | 93.22 | ||
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 92.96 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 92.91 | |
| smart00518 | 273 | AP2Ec AP endonuclease family 2. These endonuclease | 92.73 | |
| PRK01060 | 281 | endonuclease IV; Provisional | 92.62 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 92.19 | |
| KOG4058|consensus | 199 | 92.15 | ||
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 91.79 | |
| KOG2798|consensus | 369 | 91.65 | ||
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 91.52 | |
| KOG1122|consensus | 460 | 91.25 | ||
| KOG1253|consensus | 525 | 90.74 | ||
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 90.53 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 90.52 | |
| KOG0024|consensus | 354 | 90.39 | ||
| KOG1099|consensus | 294 | 90.38 | ||
| KOG1269|consensus | 364 | 89.88 | ||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 89.34 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 89.26 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 89.12 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 89.04 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 88.74 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 88.7 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 88.62 | |
| cd00019 | 279 | AP2Ec AP endonuclease family 2; These endonuclease | 88.49 | |
| KOG2352|consensus | 482 | 88.17 | ||
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 88.13 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 87.4 | |
| KOG2920|consensus | 282 | 86.61 | ||
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 86.34 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 85.78 | |
| KOG3201|consensus | 201 | 85.74 | ||
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 85.7 | |
| KOG2793|consensus | 248 | 85.46 | ||
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 84.6 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 84.44 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 84.18 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 84.14 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 84.05 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 82.37 | |
| KOG2078|consensus | 495 | 82.09 | ||
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 81.86 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 81.76 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 81.53 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 81.34 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 81.2 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 80.8 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 80.36 |
| >KOG0822|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-155 Score=1227.24 Aligned_cols=605 Identities=43% Similarity=0.737 Sum_probs=556.1
Q ss_pred CeeEEeecCCCCCCHHHHHHHHH-hCCccEEEecCCCcccccccccccccccCCCCccccc---CCCCCcCccceEEEec
Q psy17734 6 IAVSVGLEYPTCYNIQSQIESLA-AECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQS---LSSICPQWLKLIVCDI 81 (626)
Q Consensus 6 ~~~~~g~~~~~~~~~~~~~~~~~-~~~~df~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~v~~~ 81 (626)
++.++|....+.+++...++... ..|||||+.|+.+|.+|.++... ...++.+.|+++| |.+ ++|++.|||++
T Consensus 19 nSr~~~~~~~~s~e~a~~l~~~v~~~~f~fv~~P~f~~~~r~~~~~~-~~~~~~~~~~~~~dv~l~~--~dw~s~vVGk~ 95 (649)
T KOG0822|consen 19 NSRFLGNVSSCSPEVASNLDYNVATIGFNFVVGPVFGPFQRQNWVPE-QIPENQLQPICIPDVKLSG--SDWNSKVVGKL 95 (649)
T ss_pred cccccccccccCchhhhhccceeeccceeeEeecccCchhhhccccc-CCCcCCCCCccchhheeCc--ccCcceeEEee
Confidence 34567888888888888888444 88999999999999999987544 2345567788888 888 99999999999
Q ss_pred CCcccccCCccHHHHHHHHHHHHHHHhhhhhhCCCeEEEcCCCCChhhHHHHHHHHhccCCceEEEEEeeccCCCc-ccc
Q psy17734 82 QCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDFCNFARTLYAHSEKNMSYTAWIKVPIRPVDT-SML 160 (626)
Q Consensus 82 s~w~~~~ds~~~~~~~~s~~~l~~e~~~a~~~g~~~~i~~~~~~~~~~~ar~~~~~~~~~~~~~~~i~~p~~~~~~-~~~ 160 (626)
|+|| ||||+||.+|+.|+++|++|++||+|||++++++++++++..|+||.+.+...+..+-. ++||...|.. ...
T Consensus 96 S~Wi-~lDS~d~~ir~~seevll~E~~ya~ylgl~~~~l~l~~~d~~nla~i~~~~~~t~~ns~--~~v~~a~p~i~~a~ 172 (649)
T KOG0822|consen 96 SSWI-ELDSEDPKIRDLSEEVLLKELSYARYLGLQKLILALPRRDNTNLARILQNIIRTLQNSF--MRVPFAAPAIEIAI 172 (649)
T ss_pred cccc-cCCCCChHHHHhHHHHHHHHHHHHHHcCccceecCCCCCCchhHHHHHHHHHHhccCce--eEeeecchhhhhcc
Confidence 9999 99999999999999999999999999999999999988899999999998887763322 7888876511 100
Q ss_pred ccCCCCCCccchHHHHHHHHHhcCCCCceEEEEEec-CCCCCHhHHhHhhcccceEEEecccccccCCCCCccCCHhHHH
Q psy17734 161 RQQEEEPSSQDTWRWWNMFRSVTNYHSKFELALEIN-GDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLAN 239 (626)
Q Consensus 161 ~~~~~~~~~~~~w~~W~~~r~~c~~~~~l~v~L~l~-~~~p~~~~~~rW~~EPv~~~~i~~~~f~~n~~g~pvL~k~~q~ 239 (626)
....++....++|+|||+||++|+||++|+|||+|+ +++|++++++||+||||+|++|++++|++|++|||||+|+||+
T Consensus 173 ~~~~~e~e~~dtW~~Wn~~R~~C~y~~~l~VaLel~~a~~Ps~~lv~RWlaEPi~a~iisss~FvsN~~gypvL~k~~q~ 252 (649)
T KOG0822|consen 173 DSPLEEYEGNDTWELWNTFRKLCEYHPRLKVALELPRADLPSEELVDRWLAEPIEAIIISSSIFVSNRNGYPVLSKFHQN 252 (649)
T ss_pred cccccccccccHHHHHHHHHHHhCcCCceEEEEecCcccCCcHHHHhhhhccchhheeeecceeeeCCCCCccccHHHHH
Confidence 011111222689999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcceEEEEcccCC-------------CChhhHHHHHHHHHhcCCCCChhhhhhhchhhhhcCCCcchhhcchh
Q psy17734 240 FIKKILEKNLQVVIQGVNRH-------------QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFPLQPLANDLSS 306 (626)
Q Consensus 240 ~i~~~~~~~~~~~l~~~~~~-------------~~~~~y~~yl~~l~~~~~~~~~~~~~~~~y~d~lq~PLqpl~dnL~s 306 (626)
+|.+|+++++++||.|.+.+ .++.+|++|++||.+++++....+.+..+|+|+||.|||||+|||++
T Consensus 253 li~~f~~~~a~~iI~~n~~~~~~~~~s~~~~ek~~l~~Yl~YvnyL~~~~~~~n~~eh~~~~Y~d~Lq~PLQPLsdNLe~ 332 (649)
T KOG0822|consen 253 LIAHFLKVNAQIIILGNPLDVILHGMSKYANEKKGLRAYLDYVNYLSQKGPPVNNSEHQLLSYKDYLQAPLQPLSDNLEN 332 (649)
T ss_pred HHHHHHhccccEEEeCCCcchhhccccccccchhhhHHHHHHHHHHhcCCCCCChHHHHHHhHHhhhhCCCchhhhhhhh
Confidence 99999999999999887644 35889999999999999999999999999999999999999999999
Q ss_pred hHHHHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH
Q psy17734 307 FTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL 386 (626)
Q Consensus 307 ~tYe~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~ 386 (626)
.||++||+|++||++|++||.+|+.|++++..... ..+|+++|+|||||+.++++|++...+++++|||||||+|++++
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~-~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL 411 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAILKALLDRVPDESAKT-TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTL 411 (649)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHHhhCcccccCc-eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhh
Confidence 99999999999999999999999999988755544 67899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCcEEEEEecccccCCC-CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEeccChH
Q psy17734 387 KYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHK 465 (626)
Q Consensus 387 ~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~ 465 (626)
++++...|+++ |++|.+|||+|..| +++||+||||||||||||++|||||+++++|||+||+||++||+|++||++++
T Consensus 412 ~~~n~~~W~~~-Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~ 490 (649)
T KOG0822|consen 412 QNRNFECWDNR-VTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPK 490 (649)
T ss_pred hhhchhhhcCe-eEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccchhhhhhcccccHH
Confidence 99999999998 99999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhccccCCCcccCCCCcEEEEecCccccCCCeeEEEeeCCCCCCCCCCceeeEEEEEEeeCceEEEEEEEEEEE
Q psy17734 466 LFTQVKSSMIKEHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGYFDTF 545 (626)
Q Consensus 466 l~~~~~~~~~~fd~~~~~~~e~P~vv~l~~~~~Ls~p~~~~tFd~p~~~~~~~~~r~~~~~f~i~~~g~~hGf~~wFd~~ 545 (626)
+|+++++... .++||+||||.+++++.|+++|+||+|.||+.+.+.+|+|++.++|+++++|.+|||+||||++
T Consensus 491 l~q~v~a~~~------~~~fe~~YVV~l~~~~~La~~q~vftF~HPN~~~nv~N~R~~s~eF~~~~~~~lHGFaGYFd~~ 564 (649)
T KOG0822|consen 491 LYQEVKATND------PNAFEAPYVVLLHNYCILAEPQPVFTFEHPNFDFNVDNSRSKSVEFKVKSNGVLHGFAGYFDAV 564 (649)
T ss_pred HHHHHHhcCC------ccccccceEEEecceeecCCCCceeEEecCCcccccccccceeEEEecCCCceEeecchhhhhh
Confidence 9999997654 3689999999999999999999999999999988999999999999999999999999999999
Q ss_pred ecCceEEecCCCCCCCCCccceeEEEecCCceeeCCCCEEEEEEEEEecCceEEEEEEEe------cCCCCceecCCCce
Q psy17734 546 LYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNVKVWYEWLVT------KPTPSPIYNLDGRS 619 (626)
Q Consensus 546 L~~~v~lSt~P~t~s~~m~sW~q~~fpL~~Pi~V~~Gd~i~v~~~R~~d~~~VWyEW~~~------~p~~~~i~n~~G~~ 619 (626)
||++|.|||.|.||||||+||||++|||++|+.|.+|++|+++||||+|+.||||||+++ +|..++|||++||+
T Consensus 565 LYkdI~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~lsv~~wR~~d~~kVWYEW~v~~~~~l~~~~~s~iHN~~Grs 644 (649)
T KOG0822|consen 565 LYKDIFLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTLSVHFWRCVDSTKVWYEWSVESFIYLMKPSSSEIHNPNGRS 644 (649)
T ss_pred hhheeeEeeccCCCCCCceeeeeeeeeccCceEeCCCCeEEEEEEEEeCCceeEEEEEeeeeecccCCCcccccCCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred EEeee
Q psy17734 620 YKMMK 624 (626)
Q Consensus 620 ~~i~l 624 (626)
|+|+|
T Consensus 645 y~~~l 649 (649)
T KOG0822|consen 645 YSMRL 649 (649)
T ss_pred eecCC
Confidence 99986
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-116 Score=963.66 Aligned_cols=431 Identities=48% Similarity=0.865 Sum_probs=335.0
Q ss_pred ccchHHHHHHHHHhcCCCCceEEEEEecCCCCCHhHHhHhhcccceEEEecccccccCCCCCccCCHhHHHHHHHHHHhc
Q psy17734 169 SQDTWRWWNMFRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLANFIKKILEKN 248 (626)
Q Consensus 169 ~~~~w~~W~~~r~~c~~~~~l~v~L~l~~~~p~~~~~~rW~~EPv~~~~i~~~~f~~n~~g~pvL~k~~q~~i~~~~~~~ 248 (626)
+.++|++||+||++|+||++|+|+|+||+++|+.++++||+||||+|++|++++|+||++|||||+|+||+||++|+|.+
T Consensus 2 ~~~~W~~W~~~r~~c~~~~~l~v~L~l~~~lp~~~~~~rW~~EPv~~l~i~~s~F~tN~~g~pvL~k~~q~~~~~~~~~~ 81 (448)
T PF05185_consen 2 PLDTWEWWNTIRSLCNYHPRLGVALELPRDLPSEEVLNRWLGEPVKCLIIPTSIFLTNKKGYPVLSKAHQSLLRRFFRLN 81 (448)
T ss_dssp S--HHHHHHHHHHHT---TTEEEEEEE-SS--GGHHHCGGGGTTEEEEEEES-----STTT-----HHHHHHHHHH--ST
T ss_pred CCCHHHHHHHHHHHhCCCCceEEEEEcCCCCCCHHHHHHHhcCCccEEEEcHHHhhcCcCCCccCCHHHHHHHHHHHHhc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred -ceEEEEccc--------CC--CChhhHHHHHHHHHhcCCCCChhhhhhhchhhhhcCCCcchhhcchhhHHHHhhCCHH
Q psy17734 249 -LQVVIQGVN--------RH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFPLQPLANDLSSFTYEVFEKDPI 317 (626)
Q Consensus 249 -~~~~l~~~~--------~~--~~~~~y~~yl~~l~~~~~~~~~~~~~~~~y~d~lq~PLqpl~dnL~s~tYe~fe~D~~ 317 (626)
.++++.|.. ++ ++...|++||+||++++++.+..+.|+.+|+|+||.|||||+|||+|.||+.||+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~l~~~~~~~~~~~~~~~~~~d~Lq~PLqPl~dnL~s~tYe~fE~D~v 161 (448)
T PF05185_consen 82 GVQIILSGELCPILHGMEKHSDGDKGGYLQYLRYLYKKQPPLDPQEKFESGYEDYLQAPLQPLMDNLESQTYEVFEKDPV 161 (448)
T ss_dssp T-EEEEE--S-SST--TTTHHHHHHHHHHTTT-----------------------EE----TTTS---HHHHHHHCC-HH
T ss_pred CCceeecccccccccccccccccchHHHHHHHHHHHhcCCCCChhhhhhhhchhhccCCCCCchhhhccccHhhHhcCHH
Confidence 566777532 11 5667899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHH-HHcCCCC
Q psy17734 318 KYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYK-KEEQWAQ 396 (626)
Q Consensus 318 ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~-~~n~~~~ 396 (626)
||++|++||.+|+.|+........++++|||||||||+|++++++|+++.+.+++|||||+|++|..+++.+ +.|+|++
T Consensus 162 KY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~ 241 (448)
T PF05185_consen 162 KYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGD 241 (448)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCC
Confidence 999999999999999876543333578999999999999999999998777668999999999999887665 8899999
Q ss_pred CcEEEEEecccccCCCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEeccChHhHHHHhhhccc
Q psy17734 397 SDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIK 476 (626)
Q Consensus 397 ~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l~~~~~~~~~~ 476 (626)
+ |++|++|||+++.|+|+|||||||||+||+||++||||++++|+|||||++||++||+|++||+++++|+++...+.
T Consensus 242 ~-V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~l~~~~~~~~~- 319 (448)
T PF05185_consen 242 K-VTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPSSYTSYLAPISSPKLYQEVRNWWN- 319 (448)
T ss_dssp T-EEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HHHHHHHHHHHG-
T ss_pred e-EEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHHHHHHHHhhcc-
Confidence 8 99999999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred cCCCcccCCCCcEEEEecCccccCCC-eeEEEeeCCCCCC--CCCCceeeEEEEEEeeCceEEEEEEEEEEEecCceEEe
Q psy17734 477 EHQHPLYRFEQPYVVYQRNKYNIAPP-QPCFTFVHPSEDK--DPDNSRYTKATFIAEQDSVLHGIAGYFDTFLYKDINLS 553 (626)
Q Consensus 477 fd~~~~~~~e~P~vv~l~~~~~Ls~p-~~~~tFd~p~~~~--~~~~~r~~~~~f~i~~~g~~hGf~~wFd~~L~~~v~lS 553 (626)
...+++|||+.+.+...|+++ +++|+|+||+... ..++.|+..++|+++++|++|||+|||+++||++|.||
T Consensus 320 -----~~~~e~pyvv~~~~~~~Ls~~~~~~~~F~hp~~~~~~~~~~~r~~~~~F~i~~~g~vhGfagwFd~~Ly~~V~LS 394 (448)
T PF05185_consen 320 -----PSSFETPYVVHLSPFELLSDPPQPVFTFDHPNPDLPENSDNSRSSELEFKIKRDGVVHGFAGWFDAVLYGDVVLS 394 (448)
T ss_dssp -----HHHHTSSEEE--GGGGBCSCCEEEEEETTTCGGG-GGGGGSEEEEEEEEEBSSSEEEEEEEEEEEEEEECSEEEE
T ss_pred -----hhhcCCcEEEEccchhhhcCCceEEEEeccCCccccchhhhheeeeEEEeeCCCcEEEEEEEEEEEEeeCCeeee
Confidence 257999999999999999999 9999999998752 46788999999999999999999999999999999999
Q ss_pred cCCCC-CCCCCccceeEEEecCCceeeCCCCEEEEEEEEEecCceEEEEEEEec
Q psy17734 554 IHPDT-LSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNVKVWYEWLVTK 606 (626)
Q Consensus 554 t~P~t-~s~~m~sW~q~~fpL~~Pi~V~~Gd~i~v~~~R~~d~~~VWyEW~~~~ 606 (626)
|+|.+ |+++|+||+|++|||++|+.|++|++|+++|||++|++||||||++++
T Consensus 395 t~P~~~~s~~~tsW~q~~fpL~~Pl~V~~g~~I~~~i~R~~~~~~vWYEW~v~s 448 (448)
T PF05185_consen 395 TSPSSAHSPPMTSWFQIFFPLEEPLYVKAGDEISVHIWRKTDDRKVWYEWSVES 448 (448)
T ss_dssp SSTTS---TT--TTEEEEEEEEEEEEE-TT-EEEEEEEEECCSTCEEEEEEEEE
T ss_pred cCCCcCCCCCCCeEeEEEEEecCcEEECCCCEEEEEEEEEcCCCcEEEEEEEeC
Confidence 99998 999999999999999999999999999999999999999999999974
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-82 Score=682.11 Aligned_cols=381 Identities=32% Similarity=0.563 Sum_probs=324.1
Q ss_pred HHHHHHHHHHhcceEEEEcccCCCChhhHHHHHHHHHhcCCCCChhhhhhhchhhhhcCCCcchhhcchhhHHHHhhCCH
Q psy17734 237 LANFIKKILEKNLQVVIQGVNRHQSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFPLQPLANDLSSFTYEVFEKDP 316 (626)
Q Consensus 237 ~q~~i~~~~~~~~~~~l~~~~~~~~~~~y~~yl~~l~~~~~~~~~~~~~~~~y~d~lq~PLqpl~dnL~s~tYe~fe~D~ 316 (626)
.-.||.+++|+++..+.. ....+...|++||++|..++|+.+.++ +|+|+||.|||||+|||+|.|||+||+|+
T Consensus 576 ~~tfivellrrra~pvf~--~~~~d~~p~L~YL~~l~~~qP~r~~~e----sYeD~LQ~PLQPLsDNLES~TYEVFEKDp 649 (1072)
T PTZ00357 576 ALTFIVELLRRRAMPVFD--RTFFDQYPLLNYLHFKGVEEPTRDVFA----SFEGQLQLPLQPLSHHLSSGVYEVFERDA 649 (1072)
T ss_pred HHHHHHHHHHhhcccccc--cccCCccHHHHHHHHHhccCCCcchhh----hhhhhhcccCCchhhccchhhHHHHcCCc
Confidence 346788888888776665 223577889999999999999988876 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCC-------------------------cCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCcc
Q psy17734 317 IKYIRYQEAVQQALLDRVSPE-------------------------QADTVVTTIMVVGAGRGPLVTASLNAAKEANRKV 371 (626)
Q Consensus 317 ~ry~~Y~~AI~~al~d~~~~~-------------------------~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~ 371 (626)
+||++|++||.+++.++.... ..+....+|+++|||||||+.++++|++..|.++
T Consensus 650 VKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLrAak~~gvkV 729 (1072)
T PTZ00357 650 RKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHAVSALGVRL 729 (1072)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHHHHHHcCCcE
Confidence 999999999999998754210 0111235799999999999999999999999999
Q ss_pred EEEEEeCCHHH-HHHHHH-HHHcCC-------CCCcEEEEEecccccCCCC------------CccEEEeccccccCCCC
Q psy17734 372 RVYAVEKNMSA-VVGLKY-KKEEQW-------AQSDVTIVSEDMRTWNAPE------------KADIMVSELLGSFGDNE 430 (626)
Q Consensus 372 ~V~AVE~np~a-~~a~~~-~~~n~~-------~~~nV~vi~~D~~~~~~p~------------k~DiIVSEllgsfg~~E 430 (626)
+||||||||++ +.+++. .+.+.| +++ |++|++|||+|..++ ++|||||||||||||||
T Consensus 730 rIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~-VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSFGDNE 808 (1072)
T PTZ00357 730 RIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHT-LEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSLGDNE 808 (1072)
T ss_pred EEEEEecCcchHHHHHHHHhcccccccccccCCCe-EEEEeCcccccccccccccccccccccccceehHhhhccccccc
Confidence 99999999654 444443 345688 456 999999999997543 89999999999999999
Q ss_pred CcHHHHHHHHHhccc----Cc-------EEEeccceeeEEeccChHhHHHHhhhccc-c-------CCCcccCCCCcEEE
Q psy17734 431 LSPECLYAAQKYLKE----DG-------ISIPYNYTSYIAPIMSHKLFTQVKSSMIK-E-------HQHPLYRFEQPYVV 491 (626)
Q Consensus 431 l~pe~L~~~~r~Lkp----gG-------i~IP~~~t~y~api~s~~l~~~~~~~~~~-f-------d~~~~~~~e~P~vv 491 (626)
++||||++++++||+ +| ++||++||+|++||+++++|+++...... + .......+++|||+
T Consensus 809 LSPECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~V~~~~~~gltvP~p~c~~~haa~fet~YVV 888 (1072)
T PTZ00357 809 LSPECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAAVTEAAVKGLTVPPPGCHDHHAALNHTLLVT 888 (1072)
T ss_pred CCHHHHHHHHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHHHHHhhhcccccCCccccccchhhcccceEE
Confidence 999999999999986 55 59999999999999999999997642111 0 00112458899999
Q ss_pred EecCccccCCCeeEEEeeCCCCCC----------------CCCCceeeEEEEEEeeCceEEEEEEEEEEEecCc-----e
Q psy17734 492 YQRNKYNIAPPQPCFTFVHPSEDK----------------DPDNSRYTKATFIAEQDSVLHGIAGYFDTFLYKD-----I 550 (626)
Q Consensus 492 ~l~~~~~Ls~p~~~~tFd~p~~~~----------------~~~~~r~~~~~f~i~~~g~~hGf~~wFd~~L~~~-----v 550 (626)
.++++..|++||+||+|.||+.+. +.+|+|++.++|++..+|+||||+|||+++||++ |
T Consensus 889 ~L~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~v~~d~vlHGFAGYFdAvLYkDVt~~~V 968 (1072)
T PTZ00357 889 NLSRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLERAASLLFEVPPCGRCCGLAGYFSAVLYQSATAPAT 968 (1072)
T ss_pred EecceeecCCCcceeEEECCCcccccccccccccccccccccccceeEEEEEecCCCcceeeeeeEEEEEeecCCCccce
Confidence 999999999999999999998752 3578999999999999999999999999999999 6
Q ss_pred EEecCCCCCCCCCccceeEEEecC---CceeeCCCC---------EEEEEEEEEe--cCceEEEEEEEe---------cC
Q psy17734 551 NLSIHPDTLSPGLISWFPVLFPIH---EPIQLKTND---------EIEVHFWRLC--DNVKVWYEWLVT---------KP 607 (626)
Q Consensus 551 ~lSt~P~t~s~~m~sW~q~~fpL~---~Pi~V~~Gd---------~i~v~~~R~~--d~~~VWyEW~~~---------~p 607 (626)
.|||.|.+||++|+||||+||||+ ++..++.|+ .|.+++.|++ +.+||||||+++ +|
T Consensus 969 ~LSI~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq~~~~~~~~~~i~~~l~Rr~~~~e~rVwYew~v~~~~~~~~~~~~ 1048 (1072)
T PTZ00357 969 IIATAPVERTEDMYSWFPCVFALEPAQQAELQDVGQAAAEESRMVAIRVQLDRRTSLAEQRVWYEWSVTYGDAAVERQSP 1048 (1072)
T ss_pred EeecCCCCCCCCccceeeeEEecCccccceEeeccccccccccceeEEEeeeeccccccceEEEEEEEeechhhhhhcCC
Confidence 799999999999999999999998 777788887 8999999999 678999999996 34
Q ss_pred CCC-------ceecCCCceEEeee
Q psy17734 608 TPS-------PIYNLDGRSYKMMK 624 (626)
Q Consensus 608 ~~~-------~i~n~~G~~~~i~l 624 (626)
.++ -+||.||+..+|.|
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1072)
T PTZ00357 1049 STSHDASAAPLVHNKNGWAASMLL 1072 (1072)
T ss_pred CcccCcccCceeecCcchhhhhcC
Confidence 433 48999999998864
|
|
| >KOG1499|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=380.57 Aligned_cols=270 Identities=24% Similarity=0.284 Sum_probs=244.1
Q ss_pred hHHHHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH
Q psy17734 307 FTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL 386 (626)
Q Consensus 307 ~tYe~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~ 386 (626)
..++.|++|.+|..+|+.+|.++-. .+++++|||||||||.|++++++||+ .+|+|||.+..|..+.
T Consensus 33 ~iheeML~D~VRt~aYr~~i~~n~~--------lf~dK~VlDVGcGtGILS~F~akAGA-----~~V~aVe~S~ia~~a~ 99 (346)
T KOG1499|consen 33 GIHEEMLKDSVRTLAYRNAILQNKH--------LFKDKTVLDVGCGTGILSMFAAKAGA-----RKVYAVEASSIADFAR 99 (346)
T ss_pred HHHHHHHhhhhhHHHHHHHHhcchh--------hcCCCEEEEcCCCccHHHHHHHHhCc-----ceEEEEechHHHHHHH
Confidence 4678999999999999999988754 24789999999999999998888876 5999999999999999
Q ss_pred HHHHHcCCCCCcEEEEEecccccCCC-CCccEEEeccccccCCCCCc-HHHHHHHHHhcccCcEEEeccceeeEEeccCh
Q psy17734 387 KYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELLGSFGDNELS-PECLYAAQKYLKEDGISIPYNYTSYIAPIMSH 464 (626)
Q Consensus 387 ~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSEllgsfg~~El~-pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~ 464 (626)
+.++.|++++. |++++|.++++.+| +|+|+|||||||+|+..|.| .++|.++.++|+|||.++|+.+++|++||++.
T Consensus 100 ~iv~~N~~~~i-i~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~d~ 178 (346)
T KOG1499|consen 100 KIVKDNGLEDV-ITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIEDD 178 (346)
T ss_pred HHHHhcCccce-EEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEeccCc
Confidence 99999999998 99999999999999 99999999999999999997 88999999999999999999999999999999
Q ss_pred HhHHHHhhhccc---cCCCcc--cCCCCcEEEEecCccccCCCeeEEEeeCCCCCCCCCCceeeEEEEEEeeCceEEEEE
Q psy17734 465 KLFTQVKSSMIK---EHQHPL--YRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIA 539 (626)
Q Consensus 465 ~l~~~~~~~~~~---fd~~~~--~~~e~P~vv~l~~~~~Ls~p~~~~tFd~p~~~~~~~~~r~~~~~f~i~~~g~~hGf~ 539 (626)
.++.+..++|++ |||+.. .....|+|..+.+.+++++|+.+.+||..+. ..++.+....++++++++|.+|||+
T Consensus 179 ~~~~~~i~fW~~Vygfdms~~~~~~~~e~lv~vv~~~~l~t~~~~i~~~Dl~t~-~i~d~~F~s~f~l~v~r~~~i~g~v 257 (346)
T KOG1499|consen 179 SYKDDKIGFWDDVYGFDMSCIKKIAIKEPLVDVVDPEQLLTEPCLIKEFDLYTV-KIEDLSFTSPFKLKVTRNGYLHAFV 257 (346)
T ss_pred hhhhhhcCccccccccchhhhhhhhhcccceeccChhHhcccceeeEEeeeeee-eccceeeccceEEEEccCceEEEEE
Confidence 999988888876 788753 3457899999999999999999999998876 3456677889999999999999999
Q ss_pred EEEEEEecC-----ceEEecCCCCCCCCCccceeEEEecCCceeeCCCCEEEEEEEEEec
Q psy17734 540 GYFDTFLYK-----DINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCD 594 (626)
Q Consensus 540 ~wFd~~L~~-----~v~lSt~P~t~s~~m~sW~q~~fpL~~Pi~V~~Gd~i~v~~~R~~d 594 (626)
+|||+.|.+ .+.+||+|... .+||+|++|.|++|+.|++|+.|.+++....+
T Consensus 258 ~yFDv~F~~~~~~~~~~fST~P~~p---~THWKQtVfyl~~p~~v~~ge~i~g~it~~~~ 314 (346)
T KOG1499|consen 258 AYFDVEFTGCHGKKRLGFSTSPSSP---YTHWKQTVFYLENPLTVKEGEDITGTITMKPN 314 (346)
T ss_pred EEEEEeeccCCCCCcceeecCCCCC---CceeeeEEEEecCccceecCceEEEEEEEeeC
Confidence 999999974 48999999643 37899999999999999999999999986665
|
|
| >KOG1500|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=310.79 Aligned_cols=263 Identities=25% Similarity=0.298 Sum_probs=217.2
Q ss_pred HHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHH
Q psy17734 310 EVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYK 389 (626)
Q Consensus 310 e~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~ 389 (626)
..|+.|-+|...|++||..+-.| +.+++|||+|||+|+|++++++|++ ++|||||.+++|..|++.+
T Consensus 153 QNMmQDYVRTgTY~~Ail~N~sD--------F~~kiVlDVGaGSGILS~FAaqAGA-----~~vYAvEAS~MAqyA~~Lv 219 (517)
T KOG1500|consen 153 QNMMQDYVRTGTYQRAILENHSD--------FQDKIVLDVGAGSGILSFFAAQAGA-----KKVYAVEASEMAQYARKLV 219 (517)
T ss_pred HHHHHHHHhhhHHHHHHHhcccc--------cCCcEEEEecCCccHHHHHHHHhCc-----ceEEEEehhHHHHHHHHHH
Confidence 35888999999999999988765 5789999999999999998888776 5999999999999999999
Q ss_pred HHcCCCCCcEEEEEecccccCCCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEeccChHhHHH
Q psy17734 390 KEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQ 469 (626)
Q Consensus 390 ~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l~~~ 469 (626)
+.|.+.++ |++|.|.++++++|+|+|+||||+||+.+.||.|-|..-.++|+|||.|.|+|.-..+++||.++..||-+
T Consensus 220 ~~N~~~~r-ItVI~GKiEdieLPEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E 298 (517)
T KOG1500|consen 220 ASNNLADR-ITVIPGKIEDIELPEKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVE 298 (517)
T ss_pred hcCCccce-EEEccCccccccCchhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHH
Confidence 99999999 99999999999999999999999999999999986554444599999999999999999999999999987
Q ss_pred Hh---hhccc--c---CCCc------ccCCCCcEEEEecCccccCCCeeEEEeeCCCCCCCCCCce-eeEEEEEEeeCce
Q psy17734 470 VK---SSMIK--E---HQHP------LYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSR-YTKATFIAEQDSV 534 (626)
Q Consensus 470 ~~---~~~~~--f---d~~~------~~~~e~P~vv~l~~~~~Ls~p~~~~tFd~p~~~~~~~~~r-~~~~~f~i~~~g~ 534 (626)
.. ++|-. | |.++ ...|.+|.|+.++..-+++.+.. .+.||.+. ..++..+ ...++|.+...|.
T Consensus 299 ~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~RilmA~sv~-h~~dF~~~-kEedlh~i~iPlkF~~~~~g~ 376 (517)
T KOG1500|consen 299 QFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILMAKSVF-HVIDFLNM-KEEDLHEIDIPLKFHALQCGR 376 (517)
T ss_pred HHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceeeccchH-hhhhhhhc-ccchheeecccceehhhhhcc
Confidence 54 34432 1 3322 34689999988877655554431 12333332 1233333 3578999999999
Q ss_pred EEEEEEEEEEEecCc---eEEecCCCCCCCCCccceeEEEecCCceeeCCCCEEEEEEEE
Q psy17734 535 LHGIAGYFDTFLYKD---INLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWR 591 (626)
Q Consensus 535 ~hGf~~wFd~~L~~~---v~lSt~P~t~s~~m~sW~q~~fpL~~Pi~V~~Gd~i~v~~~R 591 (626)
+||+++|||+.|++. +.+||.|... .+||.|....|..|+.|++|++|++++--
T Consensus 377 iHGLAfWFDV~F~GS~~~~wlsTap~ap---ltHwyqvrCll~~Pi~v~aGq~ltGr~~L 433 (517)
T KOG1500|consen 377 IHGLAFWFDVLFDGSTVQVWLSTAPTAP---LTHWYQVRCLLSQPIFVKAGQTLTGRLLL 433 (517)
T ss_pred eeeeeeEEEEEeccceEEEccCCCCCCC---cccceeeeeeccCchhhhcCCeeeeeEEE
Confidence 999999999999985 5689988543 56799999999999999999999998753
|
|
| >KOG1501|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.3e-22 Score=206.53 Aligned_cols=293 Identities=15% Similarity=0.107 Sum_probs=212.5
Q ss_pred chhhHHHHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCC-HHH
Q psy17734 304 LSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN-MSA 382 (626)
Q Consensus 304 L~s~tYe~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~n-p~a 382 (626)
|....|..|++|..|+..|+.+|++++.+- .+..+.+...|||+|+|||.|++||++|++ -+|+|+|.- |++
T Consensus 30 lArSsy~DMl~D~dRNiky~~gi~~tIte~--kh~~~~gkv~vLdigtGTGLLSmMAvraga-----D~vtA~EvfkPM~ 102 (636)
T KOG1501|consen 30 LARSSYLDMLNDSDRNIKYRLGIEKTITEP--KHVLDIGKVFVLDIGTGTGLLSMMAVRAGA-----DSVTACEVFKPMV 102 (636)
T ss_pred HHHhhHHHHhhcccccHHHHHHHHHHhccc--ceeccCceEEEEEccCCccHHHHHHHHhcC-----CeEEeehhhchHH
Confidence 667789999999999999999999998751 112223445799999999999999888875 389999995 788
Q ss_pred HHHHHHHHHcCCCCCcEEEEEecccccCCC--CCccEEEeccccccCCCCC-cHHHHHHHHHhcccCcEEEeccceeeEE
Q psy17734 383 VVGLKYKKEEQWAQSDVTIVSEDMRTWNAP--EKADIMVSELLGSFGDNEL-SPECLYAAQKYLKEDGISIPYNYTSYIA 459 (626)
Q Consensus 383 ~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p--~k~DiIVSEllgsfg~~El-~pe~L~~~~r~LkpgGi~IP~~~t~y~a 459 (626)
..+++...+|||.++ |++|+...+++..- .++||+|.|.+..-+..|+ +|..-.+..++++|+...+|.++|+|++
T Consensus 103 d~arkI~~kng~Sdk-I~vInkrStev~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~q 181 (636)
T KOG1501|consen 103 DLARKIMHKNGMSDK-INVINKRSTEVKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQ 181 (636)
T ss_pred HHHHHHHhcCCCccc-eeeeccccceeeecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEE
Confidence 899999999999998 99999999998643 5799999999888777886 4777777788999999999999999999
Q ss_pred eccChHhHH--HHhhhccc-cCC------CcccCCCCcEEE-------EecCccccCCCeeEEEeeCCCCCCCCCCceee
Q psy17734 460 PIMSHKLFT--QVKSSMIK-EHQ------HPLYRFEQPYVV-------YQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYT 523 (626)
Q Consensus 460 pi~s~~l~~--~~~~~~~~-fd~------~~~~~~e~P~vv-------~l~~~~~Ls~p~~~~tFd~p~~~~~~~~~r~~ 523 (626)
||+|..+++ ++.+.... -|. .....+..|-|. .-+.++.||++-++|.||+|.... .......
T Consensus 182 lVES~~l~~~ndl~~~~~~ts~gv~~~p~~lesc~G~~sv~d~ql~~~~~~ef~~Ls~~~~~F~~df~~~~~-s~s~~~~ 260 (636)
T KOG1501|consen 182 LVESTFLCNLNDLRNNEAKTSDGVRLVPPGLESCFGIKSVQDSQLVDAIEKEFKLLSSEGTIFYSDFPRWID-SNSEIEE 260 (636)
T ss_pred EehhhhhhhhhccccccccccCCcccCCCccccCCCchhHHHHHHhhcchhhheeecCcceeEEeecchhhh-cchhhhh
Confidence 999998765 44433221 010 012334444332 234678899999999999995421 1111112
Q ss_pred EEEEEEeeCceEEEEEEEEEEEecC--ceEEecCCC-CCC-CC----CccceeEEEecCC--ceeeCCCCEEEEEEEEEe
Q psy17734 524 KATFIAEQDSVLHGIAGYFDTFLYK--DINLSIHPD-TLS-PG----LISWFPVLFPIHE--PIQLKTNDEIEVHFWRLC 593 (626)
Q Consensus 524 ~~~f~i~~~g~~hGf~~wFd~~L~~--~v~lSt~P~-t~s-~~----m~sW~q~~fpL~~--Pi~V~~Gd~i~v~~~R~~ 593 (626)
...+..-++|.+.....|||..++. .+.+...|- ++. ++ ..+|.|+..+.++ ...+..++..-.-+ -.|
T Consensus 261 ~r~~va~~Sg~~~~~l~wwdi~mD~~g~~f~~m~p~w~~~~~~~~~~~~~weq~c~y~~~~~~~~i~~~ss~~~v~-~~H 339 (636)
T KOG1501|consen 261 LRPPVAVHSGPLRSNLLWWDISMDQFGFSFLVMQPLWTGVTIGNSVFGLLWEQACPYPKEKKGNRIHNVSSLMTVF-SYH 339 (636)
T ss_pred hcCcccccccchhheeeeeeeeeccCcceEEEecceecCCChHHHHHHHHHHHhcCCChhhhcCceeeccceEEEe-eee
Confidence 4456677899999999999999984 577888883 222 21 2389999988873 23333332222112 245
Q ss_pred cCceEEEEEEEec
Q psy17734 594 DNVKVWYEWLVTK 606 (626)
Q Consensus 594 d~~~VWyEW~~~~ 606 (626)
+...+||-...+.
T Consensus 340 ~~l~i~~~~h~~~ 352 (636)
T KOG1501|consen 340 LWLYIYRTDHYHC 352 (636)
T ss_pred eeeEEeeeeeecc
Confidence 6667777666654
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-15 Score=143.35 Aligned_cols=133 Identities=23% Similarity=0.275 Sum_probs=114.9
Q ss_pred HhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHH
Q psy17734 311 VFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYK 389 (626)
Q Consensus 311 ~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~ 389 (626)
..+.|..|...|..||.+... .++.|+|+|+|+|++.|+.+|+ +|+|||++|... .+.+++
T Consensus 13 ~LL~D~eRlavF~~ai~~va~------------d~~~DLGaGsGiLs~~Aa~~A~------rViAiE~dPk~a~~a~eN~ 74 (252)
T COG4076 13 DLLRDVERLAVFTSAIAEVAE------------DTFADLGAGSGILSVVAAHAAE------RVIAIEKDPKRARLAEENL 74 (252)
T ss_pred hhhhhHHHHHHHHHHHHHHhh------------hceeeccCCcchHHHHHHhhhc------eEEEEecCcHHHHHhhhcC
Confidence 456788899999999887654 3689999999999987766653 999999999654 777777
Q ss_pred HHcCCCCCcEEEEEecccccCCCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEeccCh
Q psy17734 390 KEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSH 464 (626)
Q Consensus 390 ~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~ 464 (626)
+-+|.. |++++.+|+++... +++|+|+||+++..+..|..-.++.++-.+||.++.+||+...+-+.||.-+
T Consensus 75 ~v~g~~--n~evv~gDA~~y~f-e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~~~a~pv~~~ 146 (252)
T COG4076 75 HVPGDV--NWEVVVGDARDYDF-ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEVRIGANPVRRP 146 (252)
T ss_pred CCCCCc--ceEEEecccccccc-cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccccHHHhhccCccccC
Confidence 667775 79999999999998 8999999999999888887666888888899999999999999999999875
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-12 Score=114.37 Aligned_cols=106 Identities=19% Similarity=0.159 Sum_probs=79.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecc-cccCCCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDM-RTWNAPEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~-~~~~~p~k~DiIV 419 (626)
++.+|||+|||+|.++..+++.. .+ .+|+|||.+|.++ .++++....+..++ |+++++|+ ..+...++||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~--~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF--PG--ARVVGVDISPEMLEIARERAAEEGLSDR-ITFVQGDAEFDPDFLEPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH--TT--SEEEEEESSHHHHHHHHHHHHHTTTTTT-EEEEESCCHGGTTTSSCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC--CC--CEEEEEeCCHHHHHHHHHHHHhcCCCCC-eEEEECccccCcccCCCCCEEE
Confidence 35789999999999997655522 33 5999999999887 66666656777776 99999999 6667778999999
Q ss_pred ecc-ccccCCC-CCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SEL-LGSFGDN-ELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEl-lgsfg~~-El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.. ...+... +...++++.+.+.|+|||+++-.
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 966 1111111 12245788899999999998743
|
... |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.2e-12 Score=131.00 Aligned_cols=113 Identities=21% Similarity=0.200 Sum_probs=93.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEE
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIM 418 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiI 418 (626)
..++++|||||||.|.+++ .||++.| ++|+||+.|+++. .+++.+...|++++ |+++..|.+++.. +||-|
T Consensus 70 L~~G~~lLDiGCGWG~l~~---~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl~~~-v~v~l~d~rd~~e--~fDrI 141 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAI---YAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGLEDN-VEVRLQDYRDFEE--PFDRI 141 (283)
T ss_pred CCCCCEEEEeCCChhHHHH---HHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCCCcc-cEEEecccccccc--cccee
Confidence 4588999999999999984 6777776 5999999999887 77777888999877 9999999999984 59999
Q ss_pred Ee-ccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEec
Q psy17734 419 VS-ELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPI 461 (626)
Q Consensus 419 VS-Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~api 461 (626)
|| |.+.++| .|..+..+..+.+.|+|||.++-+..+..=.+-
T Consensus 142 vSvgmfEhvg-~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~ 184 (283)
T COG2230 142 VSVGMFEHVG-KENYDDFFKKVYALLKPGGRMLLHSITGPDQEF 184 (283)
T ss_pred eehhhHHHhC-cccHHHHHHHHHhhcCCCceEEEEEecCCCccc
Confidence 99 4444444 456789999999999999999877666554443
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.2e-11 Score=126.58 Aligned_cols=156 Identities=19% Similarity=0.241 Sum_probs=96.0
Q ss_pred hhhhhch---hhhhcCCCcchhhcchhhHHHHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHH
Q psy17734 283 SMAAQDF---EDYLQFPLQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTA 359 (626)
Q Consensus 283 ~~~~~~y---~d~lq~PLqpl~dnL~s~tYe~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~ 359 (626)
+.....| .|+++.-|.|.|.. ++. .|.++...-+.-+.+....+.+++ ...++.+|||||||.|.+++
T Consensus 8 ~~i~~hYDl~ndfy~l~Ld~~m~Y-S~~---~~~~~~~~Le~AQ~~k~~~~~~~~----~l~~G~~vLDiGcGwG~~~~- 78 (273)
T PF02353_consen 8 ENISAHYDLGNDFYRLFLDPTMKY-SCA---YFDEGDDTLEEAQERKLDLLCEKL----GLKPGDRVLDIGCGWGGLAI- 78 (273)
T ss_dssp HHHHHHHTS-HHHHTTTS-TT----S-------SSTT--HHHHHHHHHHHHHTTT----T--TT-EEEEES-TTSHHHH-
T ss_pred HHHHHHcCCcHHHHHHhcCCCCCC-CCe---ecCCchhhHHHHHHHHHHHHHHHh----CCCCCCEEEEeCCCccHHHH-
Confidence 3444566 37888888776542 222 244333323333333333333332 23478899999999999995
Q ss_pred HHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe-ccccccCCCCCcHHHHH
Q psy17734 360 SLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS-ELLGSFGDNELSPECLY 437 (626)
Q Consensus 360 al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS-Ellgsfg~~El~pe~L~ 437 (626)
.++++.| ++|+||..|++.. .+++.+.+.|+.++ |+++.+|.++++. +||.||| |.+.+++ .+..+.++.
T Consensus 79 --~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl~~~-v~v~~~D~~~~~~--~fD~IvSi~~~Ehvg-~~~~~~~f~ 150 (273)
T PF02353_consen 79 --YAAERYG--CHVTGITLSEEQAEYARERIREAGLEDR-VEVRLQDYRDLPG--KFDRIVSIEMFEHVG-RKNYPAFFR 150 (273)
T ss_dssp --HHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSST-EEEEES-GGG-----S-SEEEEESEGGGTC-GGGHHHHHH
T ss_pred --HHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCCCCc-eEEEEeeccccCC--CCCEEEEEechhhcC-hhHHHHHHH
Confidence 4555556 5999999999876 67777778899888 9999999998764 9999999 4444443 234578999
Q ss_pred HHHHhcccCcEEEeccce
Q psy17734 438 AAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 438 ~~~r~LkpgGi~IP~~~t 455 (626)
.+.++|||||.++-+..+
T Consensus 151 ~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 151 KISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp HHHHHSETTEEEEEEEEE
T ss_pred HHHHhcCCCcEEEEEecc
Confidence 999999999998866443
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-11 Score=122.49 Aligned_cols=101 Identities=21% Similarity=0.267 Sum_probs=69.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||||-++.. .++..+.+.+|+|+|.|+.+. .+++.....++. ||+++++|+++++.+ +.||+|+
T Consensus 47 ~g~~vLDv~~GtG~~~~~---l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~--~i~~v~~da~~lp~~d~sfD~v~ 121 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRE---LARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ--NIEFVQGDAEDLPFPDNSFDAVT 121 (233)
T ss_dssp S--EEEEET-TTSHHHHH---HGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BTTB--S-TT-EEEEE
T ss_pred CCCEEEEeCCChHHHHHH---HHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC--CeeEEEcCHHHhcCCCCceeEEE
Confidence 567999999999999853 444444446999999999877 777777777776 599999999999876 7899999
Q ss_pred eccccccCCCCC--cHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNEL--SPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP 451 (626)
+ +|+..+. .+.+|.++.|.|||||.++-
T Consensus 122 ~----~fglrn~~d~~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 122 C----SFGLRNFPDRERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp E----ES-GGG-SSHHHHHHHHHHHEEEEEEEEE
T ss_pred H----HhhHHhhCCHHHHHHHHHHHcCCCeEEEE
Confidence 8 5555443 46799999999999998763
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.25 E-value=6e-11 Score=112.16 Aligned_cols=107 Identities=21% Similarity=0.240 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiI 418 (626)
++.+|||+|||+|.++..++. +.+...+|++||.|+.++ .+.+..+..+.. |++++++|+++++ .+++||+|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~---~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~--ni~~~~~d~~~l~~~~~~~~D~I 77 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAK---ELNPGAKIIGVDISEEMIEYAKKRAKELGLD--NIEFIQGDIEDLPQELEEKFDII 77 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHH---HSTTTSEEEEEESSHHHHHHHHHHHHHTTST--TEEEEESBTTCGCGCSSTTEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHH---hcCCCCEEEEEECcHHHHHHhhccccccccc--ccceEEeehhccccccCCCeeEE
Confidence 468999999999999965442 222236999999999888 666766777776 5999999999987 44799999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEeccce
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
++...- .......+++..+.+.||++|+++-....
T Consensus 78 ~~~~~l--~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVL--HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEESTG--GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcCch--hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 995321 11112346899999999999998866554
|
... |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.2e-11 Score=115.55 Aligned_cols=99 Identities=21% Similarity=0.206 Sum_probs=76.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++... ...+|+|||.++.+. .+.++.++++.. ||+++++|++++...++||+|+|
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~----~~~~V~~iD~s~~~~~~a~~~~~~~~~~--~i~~i~~d~~~~~~~~~fD~I~s 115 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR----PELKLTLLESNHKKVAFLREVKAELGLN--NVEIVNGRAEDFQHEEQFDVITS 115 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC----CCCeEEEEeCcHHHHHHHHHHHHHhCCC--CeEEEecchhhccccCCccEEEe
Confidence 35789999999999986543322 125899999999776 666776677764 59999999999865679999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..+ ...+..+..+.+.|||||.++..
T Consensus 116 ~~~------~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 116 RAL------ASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred hhh------hCHHHHHHHHHHhcCCCCEEEEE
Confidence 652 23466788888999999999843
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=117.75 Aligned_cols=98 Identities=19% Similarity=0.214 Sum_probs=79.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||||||||-++..+++. .| ..+|+|+|.|+.+. .+++.....++. +|+++.+|+++++.+ ..||++.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~---~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~--~i~fv~~dAe~LPf~D~sFD~vt 124 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKS---VG-TGEVVGLDISESMLEVAREKLKKKGVQ--NVEFVVGDAENLPFPDNSFDAVT 124 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHh---cC-CceEEEEECCHHHHHHHHHHhhccCcc--ceEEEEechhhCCCCCCccCEEE
Confidence 5789999999999998654443 44 36999999999887 777776666665 599999999999987 6899997
Q ss_pred eccccccCCCCC--cHHHHHHHHHhcccCcEE
Q psy17734 420 SELLGSFGDNEL--SPECLYAAQKYLKEDGIS 449 (626)
Q Consensus 420 SEllgsfg~~El--~pe~L~~~~r~LkpgGi~ 449 (626)
+ +|+.... .+..|.++.|.|||||.+
T Consensus 125 ~----~fglrnv~d~~~aL~E~~RVlKpgG~~ 152 (238)
T COG2226 125 I----SFGLRNVTDIDKALKEMYRVLKPGGRL 152 (238)
T ss_pred e----eehhhcCCCHHHHHHHHHHhhcCCeEE
Confidence 7 5665544 477999999999999953
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.1e-11 Score=114.22 Aligned_cols=103 Identities=22% Similarity=0.270 Sum_probs=77.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
+..+|||+|||+|.++..++ ++ +...+|+++|+|+.|+ .++++...|++. +|+++.+|..+-..+++||+|||
T Consensus 31 ~~~~vLDlG~G~G~i~~~la---~~-~~~~~v~~vDi~~~a~~~a~~n~~~n~~~--~v~~~~~d~~~~~~~~~fD~Iv~ 104 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALA---KR-GPDAKVTAVDINPDALELAKRNAERNGLE--NVEVVQSDLFEALPDGKFDLIVS 104 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHH---HT-STCEEEEEEESBHHHHHHHHHHHHHTTCT--TEEEEESSTTTTCCTTCEEEEEE
T ss_pred cCCeEEEecCChHHHHHHHH---Hh-CCCCEEEEEcCCHHHHHHHHHHHHhcCcc--ccccccccccccccccceeEEEE
Confidence 35689999999999996433 32 3335899999999988 778888889986 49999999977655689999999
Q ss_pred ccccccCCCCC---cHHHHHHHHHhcccCcEEE
Q psy17734 421 ELLGSFGDNEL---SPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgsfg~~El---~pe~L~~~~r~LkpgGi~I 450 (626)
++.-..+..+. ..+++..+.++|||||.++
T Consensus 105 NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 105 NPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp ---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccchhcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 98743333222 3567888899999999875
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.8e-11 Score=116.66 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++ ++ | .+|+|+|.|+.++ .+++....+++. +|+++..|+.++..+++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La---~~-g--~~V~gvD~S~~~i~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~I~~ 101 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLA---AN-G--FDVTAWDKNPMSIANLERIKAAENLD--NLHTAVVDLNNLTFDGEYDFILS 101 (197)
T ss_pred CCCcEEEECCCCCHHHHHHH---HC-C--CEEEEEeCCHHHHHHHHHHHHHcCCC--cceEEecChhhCCcCCCcCEEEE
Confidence 34689999999999986443 32 3 4999999999887 666666667774 59999999998877788999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
...-++...+..+.++..+.+.|||||.++
T Consensus 102 ~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 102 TVVLMFLEAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred ecchhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 765444433345678999999999999853
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.3e-11 Score=117.18 Aligned_cols=100 Identities=18% Similarity=0.169 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++ ++ | .+|+|+|.++.++ .+.+....+++ ++++...|+..+..++++|+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la---~~-g--~~V~~iD~s~~~l~~a~~~~~~~~~---~v~~~~~d~~~~~~~~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLS---LA-G--YDVRAWDHNPASIASVLDMKARENL---PLRTDAYDINAAALNEDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHH---HC-C--CeEEEEECCHHHHHHHHHHHHHhCC---CceeEeccchhccccCCCCEEEE
Confidence 34689999999999986543 32 3 4999999999887 55555555665 37888888877766678999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
..+-++...+..+.++..+.+.|||||.++
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred ecccccCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 765444333445788999999999999854
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=118.34 Aligned_cols=108 Identities=13% Similarity=0.134 Sum_probs=82.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..+++.....+ .+|+|||.++.++ .++++....+...+ |+++++|+.+++.+ .+|+||+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~--~~v~gvD~S~~ml~~A~~~~~~~~~~~~-v~~~~~d~~~~~~~-~~D~vv~ 131 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDN--CKIIAIDNSPAMIERCRRHIDAYKAPTP-VDVIEGDIRDIAIE-NASMVVL 131 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCC-eEEEeCChhhCCCC-CCCEEeh
Confidence 457899999999999865433222122 5999999999887 77777776676666 99999999988764 5999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
...-++...+....++..+.+.|||||.++-..
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 665455444334678899999999999987654
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-10 Score=122.44 Aligned_cols=97 Identities=20% Similarity=0.183 Sum_probs=70.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++++|||+|||||.|+++|++ .|+ .+|+|+|.+|.|+ .++++...|+..++ +++. ...+.. .++||+||+
T Consensus 161 ~g~~vLDvG~GSGILaiaA~k----lGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~-~~v~--~~~~~~-~~~~dlvvA 231 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAK----LGA-KKVVAIDIDPLAVEAARENAELNGVEDR-IEVS--LSEDLV-EGKFDLVVA 231 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHH----TTB-SEEEEEESSCHHHHHHHHHHHHTT-TTC-EEES--CTSCTC-CS-EEEEEE
T ss_pred CCCEEEEeCCcHHHHHHHHHH----cCC-CeEEEecCCHHHHHHHHHHHHHcCCCee-EEEE--Eecccc-cccCCEEEE
Confidence 567999999999999964433 454 4999999999998 88999999999987 8774 222222 289999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+++... +-++...+.++|+|||.+|.+
T Consensus 232 NI~~~v-----L~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 232 NILADV-----LLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp ES-HHH-----HHHHHHHCHHHEEEEEEEEEE
T ss_pred CCCHHH-----HHHHHHHHHHhhCCCCEEEEc
Confidence 886422 234556677899999999864
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-10 Score=113.08 Aligned_cols=100 Identities=22% Similarity=0.278 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
+..++||+|||.|..+.++++. | ..|+|+|.|+.++ .+.+.....++ +|+....|+.++..++++|+|+|
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~----G--~~VtAvD~s~~al~~l~~~a~~~~l---~i~~~~~Dl~~~~~~~~yD~I~s 100 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ----G--FDVTAVDISPVALEKLQRLAEEEGL---DIRTRVADLNDFDFPEEYDFIVS 100 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT----T---EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BGCCBS-TTTEEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHC----C--CeEEEEECCHHHHHHHHHHHhhcCc---eeEEEEecchhccccCCcCEEEE
Confidence 4568999999999999754443 3 5999999999888 44444455666 49999999999998899999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
..+-.|+..+..|.+++.++..++|||+.+
T Consensus 101 t~v~~fL~~~~~~~i~~~m~~~~~pGG~~l 130 (192)
T PF03848_consen 101 TVVFMFLQRELRPQIIENMKAATKPGGYNL 130 (192)
T ss_dssp ESSGGGS-GGGHHHHHHHHHHTEEEEEEEE
T ss_pred EEEeccCCHHHHHHHHHHHHhhcCCcEEEE
Confidence 877788888888999999999999999865
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-10 Score=119.40 Aligned_cols=101 Identities=13% Similarity=0.156 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||||||+|.++..++ + .| .+|+|||.++.++ .+++....++.... |+++++|++++..+ ++||+|+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La---~-~g--~~V~GID~s~~~i~~Ar~~~~~~~~~~~-i~~~~~dae~l~~~~~~FD~Vi 203 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLA---R-MG--ATVTGVDAVDKNVKIARLHADMDPVTST-IEYLCTTAEKLADEGRKFDAVL 203 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHH---H-cC--CEEEEEeCCHHHHHHHHHHHHhcCcccc-eeEEecCHHHhhhccCCCCEEE
Confidence 56799999999999986432 2 34 4999999999877 55554444444444 99999999988644 6899999
Q ss_pred e-ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 S-ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 S-Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+ +.+.++.+ ..+++..+.+.|||||.++-.
T Consensus 204 ~~~vLeHv~d---~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 204 SLEVIEHVAN---PAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred EhhHHHhcCC---HHHHHHHHHHHcCCCcEEEEE
Confidence 8 33333322 357899999999999998855
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.5e-10 Score=111.25 Aligned_cols=98 Identities=18% Similarity=0.163 Sum_probs=78.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
+.+|||+|||+|.++..++++. .+ .+|+|||.++.+. .++++.+.+++. +++++++|+.++...++||+|++.
T Consensus 46 g~~VLDiGcGtG~~al~la~~~--~~--~~V~giD~s~~~l~~A~~~~~~~~l~--~i~~~~~d~~~~~~~~~fDlV~~~ 119 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR--PE--LKVTLVDSLGKKIAFLREVAAELGLK--NVTVVHGRAEEFGQEEKFDVVTSR 119 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC--CC--CeEEEEeCcHHHHHHHHHHHHHcCCC--CEEEEeccHhhCCCCCCccEEEEc
Confidence 5789999999999886544322 22 5999999999776 777777778875 499999999998766789999985
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+ ...+.++..+.+.|||||.++..
T Consensus 120 ~~------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 120 AV------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred cc------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 42 23477889999999999998844
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-09 Score=116.04 Aligned_cols=102 Identities=13% Similarity=0.022 Sum_probs=78.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||||||+|.++.. .+++.+ .+|+|||.++.++ .+.+....+++.++ |+++.+|+.+++.+ +.||+|+
T Consensus 118 ~~~~VLDiGCG~G~~~~~---La~~~g--~~v~gvD~s~~~i~~a~~~~~~~g~~~~-v~~~~~D~~~~~~~~~~FD~V~ 191 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRY---LARKYG--ANVKGITLSPVQAARANALAAAQGLSDK-VSFQVADALNQPFEDGQFDLVW 191 (340)
T ss_pred CCCeEEEecCCCCHHHHH---HHHhcC--CEEEEEECCHHHHHHHHHHHHhcCCCCc-eEEEEcCcccCCCCCCCccEEE
Confidence 567899999999999854 333334 4999999999877 56666667777776 99999999998754 6899999
Q ss_pred ecc-ccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SEL-LGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEl-lgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.. +.++. ....++..+.|.|||||.++-.
T Consensus 192 s~~~~~h~~---d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 192 SMESGEHMP---DKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred ECCchhccC---CHHHHHHHHHHHcCCCcEEEEE
Confidence 833 22222 2356889999999999987753
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-09 Score=109.83 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=75.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..+++. .+...+|+++|.++.+. .+.++....+. + +++++.+|.+++..+ +++|+|+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~-~v~~~~~d~~~~~~~~~~fD~V~ 119 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEA---VGPEGHVIGLDFSENMLSVGRQKVKDAGL-H-NVELVHGNAMELPFDDNSFDYVT 119 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHH---hCCCCEEEEEECCHHHHHHHHHHHHhcCC-C-ceEEEEechhcCCCCCCCccEEE
Confidence 5679999999999998644333 22235999999999776 66666555555 3 499999999988754 6899998
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+... +...+...+++..+.+.|||||.++-
T Consensus 120 ~~~~--l~~~~~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 120 IGFG--LRNVPDYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred Eecc--cccCCCHHHHHHHHHHHcCcCeEEEE
Confidence 7532 11112245788899999999999873
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-10 Score=102.20 Aligned_cols=101 Identities=25% Similarity=0.349 Sum_probs=76.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC---CCCCccEEE
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---APEKADIMV 419 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---~p~k~DiIV 419 (626)
.+|||+|||+|.++..+++.+ ..+++++|+||.+. .++++...+++.++ ++++.+|.+++. ...++|+|+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-----~~~~~gvdi~~~~~~~a~~~~~~~~~~~~-~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-----AARVTGVDIDPEAVELARRNLPRNGLDDR-VEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-----TCEEEEEESSHHHHHHHHHHCHHCTTTTT-EEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC-----CCeEEEEEECHHHHHHHHHHHHHccCCce-EEEEECchhhchhhccCceeEEEE
Confidence 589999999999997555443 25999999999887 78888888888887 999999999875 348999999
Q ss_pred ecccccc--CCC----CCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSF--GDN----ELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsf--g~~----El~pe~L~~~~r~LkpgGi~I 450 (626)
+++.-.- ... +...++++.+.+.|||||.++
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~ 112 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLV 112 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEE
Confidence 9885221 111 123567889999999999865
|
... |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=105.74 Aligned_cols=103 Identities=21% Similarity=0.166 Sum_probs=81.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCC-CccEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPE-KADIM 418 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~-k~DiI 418 (626)
.++.+++|||||||.++..++ ..+.+.+|||+|.++.+. .+.++..+.+.. |++++.+|.-+.-... ++|.|
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a----~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~--n~~vv~g~Ap~~L~~~~~~dai 106 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWA----LAGPSGRVIAIERDEEALELIERNAARFGVD--NLEVVEGDAPEALPDLPSPDAI 106 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHH----HhCCCceEEEEecCHHHHHHHHHHHHHhCCC--cEEEEeccchHhhcCCCCCCEE
Confidence 477899999999999996544 234457999999999887 788888888854 6999999998763332 79999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEeccce
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
+- |.....+++|+.+...|||||.++-+..|
T Consensus 107 FI------GGg~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 107 FI------GGGGNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred EE------CCCCCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 64 33356789999999999999999866444
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.9e-10 Score=117.40 Aligned_cols=101 Identities=22% Similarity=0.181 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.|+. |+++.|+ .+|+|+|.+|.|+ .++.++..|+.... ++.-..+..+....++||+||+
T Consensus 162 ~g~~vlDvGcGSGILaI----Aa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~-~~~~~~~~~~~~~~~~~DvIVA 235 (300)
T COG2264 162 KGKTVLDVGCGSGILAI----AAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELL-VQAKGFLLLEVPENGPFDVIVA 235 (300)
T ss_pred CCCEEEEecCChhHHHH----HHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchh-hhcccccchhhcccCcccEEEe
Confidence 57899999999999995 4444665 5999999999998 88888888987642 4444444444444369999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
+++- +-.-.+...+.+.|||||.+|-+-
T Consensus 236 NILA-----~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 236 NILA-----EVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred hhhH-----HHHHHHHHHHHHHcCCCceEEEEe
Confidence 8753 223456677889999999998653
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-09 Score=112.86 Aligned_cols=122 Identities=9% Similarity=0.095 Sum_probs=85.5
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc
Q psy17734 314 KDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE 392 (626)
Q Consensus 314 ~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n 392 (626)
+...|+..+.+-+...+.. +. .++.+|||+|||+|.++..++. . + .+|+|+|.++.++ .+++.....
T Consensus 22 ~g~~r~~~~~~~~~~~l~~-l~-----~~~~~vLDiGcG~G~~a~~la~---~-g--~~v~~vD~s~~~l~~a~~~~~~~ 89 (255)
T PRK11036 22 KGQIRQAILWQDLDRLLAE-LP-----PRPLRVLDAGGGEGQTAIKLAE---L-G--HQVILCDLSAEMIQRAKQAAEAK 89 (255)
T ss_pred ccHHHHHHHHHHHHHHHHh-cC-----CCCCEEEEeCCCchHHHHHHHH---c-C--CEEEEEECCHHHHHHHHHHHHhc
Confidence 4445555555544444432 21 1456999999999999864433 2 3 4999999999877 666666667
Q ss_pred CCCCCcEEEEEecccccC--CCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 393 QWAQSDVTIVSEDMRTWN--APEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 393 ~~~~~nV~vi~~D~~~~~--~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
++.++ |+++++|+.++. .+++||+|++...-.+. +....++..+.+.|||||+++
T Consensus 90 g~~~~-v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~--~~~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 90 GVSDN-MQFIHCAAQDIAQHLETPVDLILFHAVLEWV--ADPKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred CCccc-eEEEEcCHHHHhhhcCCCCCEEEehhHHHhh--CCHHHHHHHHHHHcCCCeEEE
Confidence 77665 999999998874 34789999984332221 223568899999999999986
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.2e-10 Score=117.89 Aligned_cols=99 Identities=17% Similarity=0.178 Sum_probs=78.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
+.+|||+|||+|.++..++ + .| .+|+|+|.|+.++ .+++....++. +++++..|+.+...+++||+|++.
T Consensus 121 ~~~vLDlGcG~G~~~~~la---~-~g--~~V~avD~s~~ai~~~~~~~~~~~l---~v~~~~~D~~~~~~~~~fD~I~~~ 191 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLA---L-LG--FDVTAVDINQQSLENLQEIAEKENL---NIRTGLYDINSASIQEEYDFILST 191 (287)
T ss_pred CCCEEEeCCCCCHHHHHHH---H-CC--CEEEEEECCHHHHHHHHHHHHHcCC---ceEEEEechhcccccCCccEEEEc
Confidence 3589999999999986433 3 24 4999999999887 55566556666 499999999887777899999998
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
...++...+..+.++..+.+.|||||.++
T Consensus 192 ~vl~~l~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 192 VVLMFLNRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 76556555566889999999999999844
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.9e-10 Score=113.85 Aligned_cols=102 Identities=19% Similarity=0.279 Sum_probs=80.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC---CCccEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP---EKADIM 418 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p---~k~DiI 418 (626)
..+|||+|||+|.++++ ++++... .+|+|||..+.+. .|+++++.|+|.++ |+++++|+.++... .+||+|
T Consensus 45 ~~~IlDlGaG~G~l~L~---la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~r-i~v~~~Di~~~~~~~~~~~fD~I 119 (248)
T COG4123 45 KGRILDLGAGNGALGLL---LAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEER-IQVIEADIKEFLKALVFASFDLI 119 (248)
T ss_pred CCeEEEecCCcCHHHHH---HhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhc-eeEehhhHHHhhhcccccccCEE
Confidence 57899999999999964 4443332 6999999999766 99999999999998 99999999998643 469999
Q ss_pred EeccccccCCCCC-----------------cHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELLGSFGDNEL-----------------SPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEllgsfg~~El-----------------~pe~L~~~~r~LkpgGi~I 450 (626)
||++.- |-.+.. ..+++..+.+.|||||.+.
T Consensus 120 i~NPPy-f~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~ 167 (248)
T COG4123 120 ICNPPY-FKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLA 167 (248)
T ss_pred EeCCCC-CCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEE
Confidence 999863 322221 2456778889999999864
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-10 Score=115.41 Aligned_cols=102 Identities=18% Similarity=0.208 Sum_probs=79.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
.+.+|||||||-|.|+..+++.+ ..|+|+|.++.++ +|+.....++. +|+.....++++... ++||+|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G------a~VtgiD~se~~I~~Ak~ha~e~gv---~i~y~~~~~edl~~~~~~FDvV~ 129 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG------ASVTGIDASEKPIEVAKLHALESGV---NIDYRQATVEDLASAGGQFDVVT 129 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC------CeeEEecCChHHHHHHHHhhhhccc---cccchhhhHHHHHhcCCCccEEE
Confidence 57899999999999996544444 4999999999877 66666666665 488999999998765 7999999
Q ss_pred e-ccccccCCCCCcHHHHHHHHHhcccCcEEEeccce
Q psy17734 420 S-ELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 420 S-Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
| |.+.+.-+ ...++.++.+.+||||+++-+...
T Consensus 130 cmEVlEHv~d---p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 130 CMEVLEHVPD---PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred EhhHHHccCC---HHHHHHHHHHHcCCCcEEEEeccc
Confidence 9 66544322 234889999999999998866443
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-09 Score=110.09 Aligned_cols=105 Identities=9% Similarity=0.022 Sum_probs=74.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHH--HcCCCCCcEEEEEecccccCCC-CCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKK--EEQWAQSDVTIVSEDMRTWNAP-EKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~--~n~~~~~nV~vi~~D~~~~~~p-~k~Di 417 (626)
++.+|||+|||+|.++.. .+++.+.+.+|+|+|.++.++ .+++... ..+..+ +|+++++|+++++.+ +.||+
T Consensus 73 ~~~~VLDlGcGtG~~~~~---la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~-~i~~~~~d~~~lp~~~~sfD~ 148 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFL---LSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYK-NIEWIEGDATDLPFDDCYFDA 148 (261)
T ss_pred CCCEEEEECCcCCHHHHH---HHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCC-CeEEEEcccccCCCCCCCEeE
Confidence 467999999999998753 333333335999999999887 5544332 122223 499999999998876 58999
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
|++...-+.. +....++..+.|.|||||.++-.
T Consensus 149 V~~~~~l~~~--~d~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 149 ITMGYGLRNV--VDRLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred EEEecccccC--CCHHHHHHHHHHHcCcCcEEEEE
Confidence 9884321111 22467899999999999987654
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-09 Score=109.47 Aligned_cols=108 Identities=15% Similarity=0.174 Sum_probs=78.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..+++.....+ .+|+|+|.++.++ .+++.....+...+ |+++++|+.++..+ .+|+|++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~--~~v~gvD~s~~ml~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~-~~d~v~~ 128 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPN--VKIIGIDNSQPMVERCRQHIAAYHSEIP-VEILCNDIRHVEIK-NASMVIL 128 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCC-eEEEECChhhCCCC-CCCEEee
Confidence 457899999999999865444322122 5999999999877 66666555554455 99999999998764 6899888
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
...-++...+....++..+.+.|||||.++-..
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 553333322223568899999999999988654
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.5e-09 Score=104.85 Aligned_cols=101 Identities=18% Similarity=0.219 Sum_probs=76.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc--CCCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW--NAPEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~--~~p~k~DiI 418 (626)
++.+|||+|||+|.++..+++.. +...+|+|+|.++.+. .++++.+.++..+. |+++.+|+.+. ..++++|.|
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~---~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~-v~~~~~d~~~~l~~~~~~~D~V 115 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLV---GETGKVYAVDKDEKAINLTRRNAEKFGVLNN-IVLIKGEAPEILFTINEKFDRI 115 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHh---CCCCEEEEEECCHHHHHHHHHHHHHhCCCCC-eEEEEechhhhHhhcCCCCCEE
Confidence 56799999999999986544432 2225999999999776 67777777775555 99999999874 223689999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
++.. ..+...++++.+.+.|||||.++-
T Consensus 116 ~~~~-----~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 116 FIGG-----GSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred EECC-----CcccHHHHHHHHHHHcCCCcEEEE
Confidence 9842 123347789999999999999884
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.8e-09 Score=95.07 Aligned_cols=102 Identities=21% Similarity=0.215 Sum_probs=75.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc--CCCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW--NAPEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~--~~p~k~DiI 418 (626)
++.+|||+|||+|.++..+++. .+. .+|+++|.++.+. .++++++..+.. +++++.+|..+. ..++++|+|
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~---~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~D~v 92 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARL---VPN-GRVYAIERNPEALRLIERNARRFGVS--NIVIVEGDAPEALEDSLPEPDRV 92 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHH---CCC-ceEEEEcCCHHHHHHHHHHHHHhCCC--ceEEEeccccccChhhcCCCCEE
Confidence 4569999999999998654432 222 5999999999776 666666666654 499999997753 234689999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
++.. ..+...+.++.+.++|||||.++-.-+
T Consensus 93 ~~~~-----~~~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 93 FIGG-----SGGLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred EECC-----cchhHHHHHHHHHHHcCCCCEEEEEec
Confidence 9843 122346789999999999999987654
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.00 E-value=5e-10 Score=98.50 Aligned_cols=97 Identities=25% Similarity=0.261 Sum_probs=69.6
Q ss_pred EEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEEe-cc
Q psy17734 346 IMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMVS-EL 422 (626)
Q Consensus 346 VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIVS-El 422 (626)
|||+|||+|...+.++... ..+...++++||.++.++ .+++.....+. + ++++++|++++.. .+++|+|++ ..
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~-~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DAGPSSRVIGVDISPEMLELAKKRFSEDGP--K-VRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTT--T-SEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHh-hhcccceEEEEECCHHHHHHHHHhchhcCC--c-eEEEECCHhHCcccCCCeeEEEEcCC
Confidence 7999999999998777665 223335999999999887 56666555555 4 9999999999864 369999999 34
Q ss_pred -ccccCCCCCcHHHHHHHHHhcccCc
Q psy17734 423 -LGSFGDNELSPECLYAAQKYLKEDG 447 (626)
Q Consensus 423 -lgsfg~~El~pe~L~~~~r~LkpgG 447 (626)
+.+ ...+....+++.+.+.|||||
T Consensus 77 ~~~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCC-CCHHHHHHHHHHHHHHhCCCC
Confidence 443 333334678899999999998
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-09 Score=91.87 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=66.3
Q ss_pred EEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEecccc
Q psy17734 347 MVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELLG 424 (626)
Q Consensus 347 LDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSEllg 424 (626)
||+|||+|..+..++.. .+ .+|+++|.++.+. .+++... .. ++.++.+|+++++.+ +.||+|++.-.-
T Consensus 1 LdiG~G~G~~~~~l~~~---~~--~~v~~~D~~~~~~~~~~~~~~----~~-~~~~~~~d~~~l~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR---GG--ASVTGIDISEEMLEQARKRLK----NE-GVSFRQGDAEDLPFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT---TT--CEEEEEES-HHHHHHHHHHTT----TS-TEEEEESBTTSSSS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhc---cC--CEEEEEeCCHHHHHHHHhccc----cc-CchheeehHHhCccccccccccccccce
Confidence 79999999998654333 12 5999999999876 3343321 22 388999999999876 789999995543
Q ss_pred ccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 425 SFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 425 sfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
++. +....+++.+.|.|||||.++
T Consensus 71 ~~~--~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 71 HHL--EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp GGS--SHHHHHHHHHHHHEEEEEEEE
T ss_pred eec--cCHHHHHHHHHHHcCcCeEEe
Confidence 333 445778999999999999976
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.2e-09 Score=108.45 Aligned_cols=104 Identities=13% Similarity=0.160 Sum_probs=78.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..+ ++..+...+|+|+|.++.++ .++++....+.. +++++.+|+++++.+ +.||+|+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~---a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~--~v~~~~~d~~~l~~~~~~fD~Vi 151 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLA---ARRVGPTGKVIGVDMTPEMLAKARANARKAGYT--NVEFRLGEIEALPVADNSVDVII 151 (272)
T ss_pred CCCEEEEeCCCCCHHHHHH---HHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC--CEEEEEcchhhCCCCCCceeEEE
Confidence 5689999999999887533 33334435899999999876 667766666664 499999999988764 5899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+...... ....+.++..+.+.|||||.++-.
T Consensus 152 ~~~v~~~--~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 152 SNCVINL--SPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EcCcccC--CCCHHHHHHHHHHHcCCCcEEEEE
Confidence 9754322 122467899999999999998764
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.8e-09 Score=102.17 Aligned_cols=98 Identities=17% Similarity=0.181 Sum_probs=74.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..+++.. .+.+|+++|.++.+. .++++...++.. +|+++.+|... ..++++|+|++
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~----~~~~v~~vD~s~~~~~~a~~n~~~~~~~--~i~~~~~d~~~-~~~~~~D~v~~ 103 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQF----PSLQVTAIERNPDALRLIKENRQRFGCG--NIDIIPGEAPI-ELPGKADAIFI 103 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHC----CCCEEEEEECCHHHHHHHHHHHHHhCCC--CeEEEecCchh-hcCcCCCEEEE
Confidence 45789999999999996544332 125999999999876 667777677764 49999999753 34578999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
... .+..+++++.+.+.|||||.++-
T Consensus 104 ~~~-----~~~~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 104 GGS-----GGNLTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred CCC-----ccCHHHHHHHHHHhcCCCeEEEE
Confidence 432 23357788888999999999875
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.3e-09 Score=105.65 Aligned_cols=100 Identities=13% Similarity=0.151 Sum_probs=77.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec-c
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE-L 422 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE-l 422 (626)
+|||+|||+|.++..+ ++..+ ..+|+++|.++.+. .+.+.....++.++ ++++.+|+.+...+++||+|++. .
T Consensus 2 ~vLDiGcG~G~~~~~l---a~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~-i~~~~~d~~~~~~~~~fD~I~~~~~ 76 (224)
T smart00828 2 RVLDFGCGYGSDLIDL---AERHP-HLQLHGYTISPEQAEVGRERIRALGLQGR-IRIFYRDSAKDPFPDTYDLVFGFEV 76 (224)
T ss_pred eEEEECCCCCHHHHHH---HHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcc-eEEEecccccCCCCCCCCEeehHHH
Confidence 6999999999987543 33332 25999999999876 66666777788887 99999999766556789999983 3
Q ss_pred ccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 423 LGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 423 lgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.+. ...++++..+.+.|||||.++-.
T Consensus 77 l~~~---~~~~~~l~~~~~~LkpgG~l~i~ 103 (224)
T smart00828 77 IHHI---KDKMDLFSNISRHLKDGGHLVLA 103 (224)
T ss_pred HHhC---CCHHHHHHHHHHHcCCCCEEEEE
Confidence 3333 22578999999999999998854
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.7e-09 Score=108.67 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=70.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
++.+|||+|||+|.++..++... .+ .+|+|+|.++.++...+. . +++++.+|++++....+||+|+|.
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~--p~--~~v~gvD~s~~~~~~a~~-------~-~~~~~~~d~~~~~~~~~fD~v~~~ 96 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRW--PG--AVIEALDSSPEMVAAARE-------R-GVDARTGDVRDWKPKPDTDVVVSN 96 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHC--CC--CEEEEEECCHHHHHHHHh-------c-CCcEEEcChhhCCCCCCceEEEEe
Confidence 56799999999999986433321 12 499999999987733221 1 388999999988655789999996
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
.+-.+.. ....++..+.+.|||||.++-
T Consensus 97 ~~l~~~~--d~~~~l~~~~~~LkpgG~l~~ 124 (255)
T PRK14103 97 AALQWVP--EHADLLVRWVDELAPGSWIAV 124 (255)
T ss_pred hhhhhCC--CHHHHHHHHHHhCCCCcEEEE
Confidence 5433322 236688899999999998764
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.4e-09 Score=110.27 Aligned_cols=99 Identities=23% Similarity=0.250 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++ + .|. .+|+|+|.++.++ .++++...|+..++ ++++.++.... .+++||+|++
T Consensus 159 ~g~~VLDvGcGsG~lai~aa---~-~g~-~~V~avDid~~al~~a~~n~~~n~~~~~-~~~~~~~~~~~-~~~~fDlVva 231 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAAL---K-LGA-AKVVGIDIDPLAVESARKNAELNQVSDR-LQVKLIYLEQP-IEGKADVIVA 231 (288)
T ss_pred CCCEEEEeCCChhHHHHHHH---H-cCC-CeEEEEECCHHHHHHHHHHHHHcCCCcc-eEEEecccccc-cCCCceEEEE
Confidence 45799999999999985433 3 343 4999999999887 77888888888776 88888774332 2468999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.+. +....++..+.+.|||||.++-.
T Consensus 232 n~~~-----~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 232 NILA-----EVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred ecCH-----HHHHHHHHHHHHHcCCCcEEEEE
Confidence 7642 22356778888999999998753
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.8e-09 Score=111.74 Aligned_cols=103 Identities=15% Similarity=0.070 Sum_probs=72.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHH-HcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKK-EEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~-~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||||||+|.++..++.+ |+ .+|+|||.++.+....+..+ ..+-.. +|+++.+|+++++.+++||+|+|
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~----g~-~~V~GiD~S~~~l~q~~a~~~~~~~~~-~i~~~~~d~e~lp~~~~FD~V~s 195 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGA----GA-KLVVGIDPSQLFLCQFEAVRKLLGNDQ-RAHLLPLGIEQLPALKAFDTVFS 195 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHc----CC-CEEEEEcCCHHHHHHHHHHHHhcCCCC-CeEEEeCCHHHCCCcCCcCEEEE
Confidence 5679999999999998644333 33 37999999987653222222 122223 49999999999987789999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..+ +........++..+.+.|||||.++-.
T Consensus 196 ~~v--l~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 196 MGV--LYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred CCh--hhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 322 111122356889999999999998864
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-08 Score=106.43 Aligned_cols=108 Identities=16% Similarity=0.158 Sum_probs=82.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH-cCCCCCcEEEEEecccccCC-CCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE-EQWAQSDVTIVSEDMRTWNA-PEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~-n~~~~~nV~vi~~D~~~~~~-p~k~DiI 418 (626)
+.++|+|||||.|+++...+.++. ..+.+++++|.++.+. .|++.... .++.++ |+++.+|+.+... .++||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~--~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~r-V~F~~~Da~~~~~~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHH--LPTTSFHNFDIDPSANDVARRLVSSDPDLSKR-MFFHTADVMDVTESLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHhhhccCccCC-cEEEECchhhcccccCCcCEE
Confidence 457899999999999765444332 2336999999999887 77776644 788887 9999999988643 3789999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
++-.+.+| +.+.-.++++.+.+.|+|||.++-.+
T Consensus 200 F~~ALi~~-dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 200 FLAALVGM-DKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEeccccc-ccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99744333 23445789999999999999998664
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.9e-09 Score=103.00 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=71.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-CCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-APEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-~p~k~DiIV 419 (626)
++.+|||+|||+|.++..++++. +...+|+++|.++.+. .++++...++..++ ++++.+|..+.. ...+||+|+
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~---~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~-v~~~~~d~~~~~~~~~~fD~Ii 147 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAI---ERRGKVYTVEIVKELAIYAAQNIERLGYWGV-VEVYHGDGKRGLEKHAPFDAII 147 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhc---CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEECCcccCCccCCCccEEE
Confidence 56799999999999986544433 2224999999999776 67777777777665 999999998753 236899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+... .+. +.+.+.+.|||||.++
T Consensus 148 ~~~~-----~~~---~~~~l~~~L~~gG~lv 170 (205)
T PRK13944 148 VTAA-----AST---IPSALVRQLKDGGVLV 170 (205)
T ss_pred EccC-----cch---hhHHHHHhcCcCcEEE
Confidence 8432 122 2345667899999875
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.2e-09 Score=108.51 Aligned_cols=104 Identities=22% Similarity=0.201 Sum_probs=75.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
..+|||+|||+|.++..++.... +.+|+|+|.|+.++ .++++.+.++..++ |+++++|+.+.-.+++||+|||+
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~----~~~v~avDis~~al~~A~~n~~~~~~~~~-i~~~~~D~~~~~~~~~fD~Iv~N 196 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFP----EAEVDAVDISPDALAVAEINIERHGLEDR-VTLIQSDLFAALPGRKYDLIVSN 196 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCc-EEEEECchhhccCCCCccEEEEC
Confidence 46899999999999865443221 25999999999887 88888888888776 99999998654333589999997
Q ss_pred cccccCC-----------C----------CC---cHHHHHHHHHhcccCcEEEec
Q psy17734 422 LLGSFGD-----------N----------EL---SPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 422 llgsfg~-----------~----------El---~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.- ... + .+ ...++..+.++|+|||.++-.
T Consensus 197 PPy-~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 197 PPY-VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred CCC-CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 531 110 0 11 134566778899999998744
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.2e-09 Score=105.67 Aligned_cols=98 Identities=13% Similarity=0.195 Sum_probs=72.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++ +..+. .+|+|||.++.++ .+++. . . +++++.+|+.++..+.++|+|+|
T Consensus 31 ~~~~vLDiGcG~G~~~~~la---~~~~~-~~v~gvD~s~~~i~~a~~~-----~-~-~~~~~~~d~~~~~~~~~fD~v~~ 99 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLV---ERWPA-ARITGIDSSPAMLAEARSR-----L-P-DCQFVEADIASWQPPQALDLIFA 99 (258)
T ss_pred CCCEEEEEcccCCHHHHHHH---HHCCC-CEEEEEECCHHHHHHHHHh-----C-C-CCeEEECchhccCCCCCccEEEE
Confidence 56799999999999986433 22221 4999999999877 33332 2 2 49999999998876679999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
...-.+.. ....++..+.+.|||||.++-+
T Consensus 100 ~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 100 NASLQWLP--DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred ccChhhCC--CHHHHHHHHHHhcCCCcEEEEE
Confidence 64322221 2356889999999999997764
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.1e-09 Score=109.78 Aligned_cols=104 Identities=13% Similarity=0.033 Sum_probs=72.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHH-cCCCCCcEEEEEecccccCCCCCccEEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKE-EQWAQSDVTIVSEDMRTWNAPEKADIMV 419 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~-n~~~~~nV~vi~~D~~~~~~p~k~DiIV 419 (626)
.++++|||||||+|.++..++ . .|+ .+|+|||.++.+....+.++. .+-..+ +.++.++++++....+||+|+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~---~-~g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~-v~~~~~~ie~lp~~~~FD~V~ 193 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRML---G-HGA-KSLVGIDPTVLFLCQFEAVRKLLDNDKR-AILEPLGIEQLHELYAFDTVF 193 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHH---H-cCC-CEEEEEcCCHHHHHHHHHHHHHhccCCC-eEEEECCHHHCCCCCCcCEEE
Confidence 356899999999999875433 2 233 389999999976532222221 121234 999999999987667899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
|.-+-+. ......+|..+.+.|||||.++-.
T Consensus 194 s~gvL~H--~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 194 SMGVLYH--RKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred Ecchhhc--cCCHHHHHHHHHHhcCCCCEEEEE
Confidence 9432111 122356899999999999998854
|
Known examples to date are restricted to the proteobacteria. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.7e-09 Score=102.91 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=74.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecc-cccC--C-CCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDM-RTWN--A-PEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~-~~~~--~-p~k~D 416 (626)
+..+|||+|||+|.++..++.. .. ..+|+|||.|+.++ .+.++...+++. ||+++++|+ +.+. . ++.+|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~---~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~--~v~~~~~d~~~~l~~~~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKA---NP-DINFIGIEVHEPGVGKALKKIEEEGLT--NLRLLCGDAVEVLLDMFPDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHH---CC-CccEEEEEechHHHHHHHHHHHHcCCC--CEEEEecCHHHHHHHHcCccccc
Confidence 3468999999999998654332 21 25899999999877 666666667763 599999999 6654 3 46899
Q ss_pred EEEeccccccCC--C----CCcHHHHHHHHHhcccCcEEE
Q psy17734 417 IMVSELLGSFGD--N----ELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 417 iIVSEllgsfg~--~----El~pe~L~~~~r~LkpgGi~I 450 (626)
.|++.....+.. . ...+.++..+.+.|||||.++
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~ 153 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIH 153 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEE
Confidence 999854322211 1 114678999999999999987
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-08 Score=98.62 Aligned_cols=100 Identities=17% Similarity=0.084 Sum_probs=72.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++ + .+ .+|+++|.++.+. .++++...++. +++++.+|..+.. +.+||+|++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~---~-~~--~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~-~~~fD~Vi~ 88 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLK---G-KG--KCILTTDINPFAVKELRENAKLNNV---GLDVVMTDLFKGV-RGKFDVILF 88 (179)
T ss_pred CCCeEEEeCCChhHHHHHHH---h-cC--CEEEEEECCHHHHHHHHHHHHHcCC---ceEEEEccccccc-CCcccEEEE
Confidence 34689999999999986433 2 23 2899999999877 66777666664 4999999987754 468999999
Q ss_pred ccccccCCC-------------------CCcHHHHHHHHHhcccCcEEEe
Q psy17734 421 ELLGSFGDN-------------------ELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ellgsfg~~-------------------El~pe~L~~~~r~LkpgGi~IP 451 (626)
.+.-..... +....++..+.++|||||.++-
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence 864211110 0134578888999999998664
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-08 Score=102.33 Aligned_cols=96 Identities=17% Similarity=0.132 Sum_probs=71.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-CCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-APEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-~p~k~DiIV 419 (626)
++.+|||+|||+|.++..+++.. +...+|++||.++.+. .++++...+++. ||+++.+|..+.. ...+||+|+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~---~~~g~V~~vD~~~~~~~~A~~~~~~~g~~--~v~~~~~d~~~~~~~~~~fD~Ii 151 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIV---GRDGLVVSIERIPELAEKAERRLRKLGLD--NVIVIVGDGTQGWEPLAPYDRIY 151 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHh---CCCCEEEEEeCCHHHHHHHHHHHHHCCCC--CeEEEECCcccCCcccCCCCEEE
Confidence 56799999999999996544433 3224899999999876 777777778874 5999999998753 236899998
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+... .+.+.+.+.+.|||||+++
T Consensus 152 ~~~~--------~~~~~~~~~~~L~~gG~lv 174 (215)
T TIGR00080 152 VTAA--------GPKIPEALIDQLKEGGILV 174 (215)
T ss_pred EcCC--------cccccHHHHHhcCcCcEEE
Confidence 7421 1234455678899999876
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.1e-09 Score=108.89 Aligned_cols=103 Identities=23% Similarity=0.244 Sum_probs=75.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEecc
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSEL 422 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEl 422 (626)
.+|||+|||+|.++..++.. .. ..+|+|+|.|+.++ .++++.+.++..++ |+++++|+.+...+.+||+|||++
T Consensus 135 ~~VLDlG~GsG~iai~la~~---~p-~~~V~avDis~~al~~A~~n~~~~~l~~~-i~~~~~D~~~~l~~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYA---FP-DAEVDAVDISPDALAVAEINIERHGLEDR-VTLIESDLFAALPGRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHH---CC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCc-EEEEECchhhhCCCCCccEEEECC
Confidence 58999999999998654332 21 25999999999887 88888888888776 999999987643345899999975
Q ss_pred ccccC---------------------CCCC---cHHHHHHHHHhcccCcEEEec
Q psy17734 423 LGSFG---------------------DNEL---SPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 423 lgsfg---------------------~~El---~pe~L~~~~r~LkpgGi~IP~ 452 (626)
. +.. ...+ ...++..+.++|+|||.++-.
T Consensus 210 P-yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 210 P-YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred C-CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3 111 1111 134667778899999998743
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.2e-09 Score=103.72 Aligned_cols=100 Identities=19% Similarity=0.058 Sum_probs=72.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++ +. +. .+|+++|.++.+. .++++...++. +++++++|+.+....++||+|++
T Consensus 36 ~~~~vLDlGcG~G~~~~~la---~~-~~-~~v~~vD~s~~~l~~a~~n~~~~~~---~~~~~~~d~~~~~~~~~fD~Vi~ 107 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAA---AA-GA-GSVTAVDISRRAVRSARLNALLAGV---DVDVRRGDWARAVEFRPFDVVVS 107 (223)
T ss_pred CCCeEEEecCCHHHHHHHHH---Hc-CC-CeEEEEECCHHHHHHHHHHHHHhCC---eeEEEECchhhhccCCCeeEEEE
Confidence 45789999999999986433 32 32 4999999999877 66666666665 49999999987644578999999
Q ss_pred ccccccCCCC-----------------C---cHHHHHHHHHhcccCcEEE
Q psy17734 421 ELLGSFGDNE-----------------L---SPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgsfg~~E-----------------l---~pe~L~~~~r~LkpgGi~I 450 (626)
++. +....+ . ...+++.+.++|||||+++
T Consensus 108 npP-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~ 156 (223)
T PRK14967 108 NPP-YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLL 156 (223)
T ss_pred CCC-CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEE
Confidence 863 221111 1 2345677789999999988
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=102.19 Aligned_cols=96 Identities=16% Similarity=0.174 Sum_probs=70.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-CCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-APEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-~p~k~DiIV 419 (626)
++.+|||+|||+|.++..+++.. +...+|+++|.++.+. .++++.+..+.. ||+++++|..+.. ...+||+|+
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~---~~~~~V~~vE~~~~~~~~a~~~l~~~g~~--~v~~~~gd~~~~~~~~~~fD~I~ 150 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIV---GKSGKVVTIERIPELAEKAKKTLKKLGYD--NVEVIVGDGTLGYEENAPYDRIY 150 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhc---CCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CeEEEECCcccCCCcCCCcCEEE
Confidence 56799999999999985444332 3235999999999776 777777777764 5999999987643 336899998
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+.-. . +++...+.+.|||||.++
T Consensus 151 ~~~~-----~---~~~~~~l~~~LkpgG~lv 173 (212)
T PRK13942 151 VTAA-----G---PDIPKPLIEQLKDGGIMV 173 (212)
T ss_pred ECCC-----c---ccchHHHHHhhCCCcEEE
Confidence 7321 1 223345667899999865
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-08 Score=114.97 Aligned_cols=147 Identities=18% Similarity=0.183 Sum_probs=93.1
Q ss_pred chhhcchhhHHHHhhCCHHHHHHHHHHHHH--HHhh---ccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEE
Q psy17734 299 PLANDLSSFTYEVFEKDPIKYIRYQEAVQQ--ALLD---RVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRV 373 (626)
Q Consensus 299 pl~dnL~s~tYe~fe~D~~ry~~Y~~AI~~--al~d---~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V 373 (626)
|+.+...-..|+.|.+++.+|+.|.++..- .+.. ......+..++.+|||+|||+|.++..++.. . ...+|
T Consensus 370 ~~~~r~~~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d~~~g~rVLDIGCGTG~ls~~LA~~---~-P~~kV 445 (677)
T PRK06922 370 MMHARANVLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILDYIKGDTIVDVGAGGGVMLDMIEEE---T-EDKRI 445 (677)
T ss_pred hHHHHHHhHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhhhcCCCEEEEeCCCCCHHHHHHHHh---C-CCCEE
Confidence 566554446788888888888877643221 0000 0000001125679999999999987543322 2 12599
Q ss_pred EEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--C-CCCccEEEeccccc-cC----------CCCCcHHHHHH
Q psy17734 374 YAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--A-PEKADIMVSELLGS-FG----------DNELSPECLYA 438 (626)
Q Consensus 374 ~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~-p~k~DiIVSEllgs-fg----------~~El~pe~L~~ 438 (626)
+|+|.++.++ .+++.....+ . +++++.+|+.++. . +++||+|++..+-+ +. ..+....++..
T Consensus 446 tGIDIS~~MLe~Ararl~~~g--~-~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLre 522 (677)
T PRK06922 446 YGIDISENVIDTLKKKKQNEG--R-SWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQS 522 (677)
T ss_pred EEEECCHHHHHHHHHHhhhcC--C-CeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHH
Confidence 9999999877 5544433333 3 4999999998865 2 47899999854211 11 01223567888
Q ss_pred HHHhcccCcEEEec
Q psy17734 439 AQKYLKEDGISIPY 452 (626)
Q Consensus 439 ~~r~LkpgGi~IP~ 452 (626)
+.+.|||||.++-.
T Consensus 523 I~RVLKPGGrLII~ 536 (677)
T PRK06922 523 AYEVLKPGGRIIIR 536 (677)
T ss_pred HHHHcCCCcEEEEE
Confidence 99999999998764
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.2e-09 Score=111.36 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=75.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCC--CCcEEEEEecccccCCCCCccEEEe
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWA--QSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~--~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
.+|||+|||+|.++..+++. . ...+|++||.|+.|+ .++++.+.|+.. ++ ++++.+|+.+-..+.+||+|+|
T Consensus 230 ~~VLDLGCGtGvi~i~la~~---~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~-v~~~~~D~l~~~~~~~fDlIls 304 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDK---N-PQAKVVFVDESPMAVASSRLNVETNMPEALDR-CEFMINNALSGVEPFRFNAVLC 304 (378)
T ss_pred CeEEEEeccccHHHHHHHHh---C-CCCEEEEEECCHHHHHHHHHHHHHcCcccCce-EEEEEccccccCCCCCEEEEEE
Confidence 58999999999999643332 2 225999999999887 777777777643 24 8999999865433468999999
Q ss_pred ccccccCCC---CCcHHHHHHHHHhcccCcEEEe
Q psy17734 421 ELLGSFGDN---ELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ellgsfg~~---El~pe~L~~~~r~LkpgGi~IP 451 (626)
++.-+.+.. +...+++..+.+.|||||.++-
T Consensus 305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~i 338 (378)
T PRK15001 305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYI 338 (378)
T ss_pred CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEE
Confidence 986443321 1124577888899999998653
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=104.08 Aligned_cols=95 Identities=13% Similarity=0.117 Sum_probs=69.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
+..+|||+|||+|.++..+. + .+ .+|+++|.|+.++ .+++.. .. +.++.+|+++++.+ ++||+|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~---~-~~--~~v~~~D~s~~~l~~a~~~~------~~-~~~~~~d~~~~~~~~~~fD~V~ 108 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWR---E-RG--SQVTALDLSPPMLAQARQKD------AA-DHYLAGDIESLPLATATFDLAW 108 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHH---H-cC--CeEEEEECCHHHHHHHHhhC------CC-CCEEEcCcccCcCCCCcEEEEE
Confidence 45689999999999875432 2 23 4999999999776 333321 12 67889999988765 5799999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|...-.+ .+...+.+..+.+.|||||.++-
T Consensus 109 s~~~l~~--~~d~~~~l~~~~~~Lk~gG~l~~ 138 (251)
T PRK10258 109 SNLAVQW--CGNLSTALRELYRVVRPGGVVAF 138 (251)
T ss_pred ECchhhh--cCCHHHHHHHHHHHcCCCeEEEE
Confidence 9653222 12246788999999999999873
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.7e-09 Score=100.54 Aligned_cols=101 Identities=19% Similarity=0.147 Sum_probs=68.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEE-Ee
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIM-VS 420 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiI-VS 420 (626)
-..++++|||.|.|+.. .+.+. .+++|+|.++.|+ .|++... ++. +|+++..|+.++.++++||+| +|
T Consensus 44 y~~alEvGCs~G~lT~~---LA~rC---d~LlavDis~~Al~~Ar~Rl~--~~~--~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTER---LAPRC---DRLLAVDISPRALARARERLA--GLP--HVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp EEEEEEE--TTSHHHHH---HGGGE---EEEEEEES-HHHHHHHHHHTT--T-S--SEEEEES-TTT---SS-EEEEEEE
T ss_pred cceeEecCCCccHHHHH---HHHhh---CceEEEeCCHHHHHHHHHhcC--CCC--CeEEEECcCCCCCCCCCeeEEEEe
Confidence 45799999999999964 34433 3999999999998 4444432 343 599999999998888999997 55
Q ss_pred ccccccCCC-CCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 421 ELLGSFGDN-ELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 421 Ellgsfg~~-El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
|. ++|++. +.+...++.+...|+|||.+|-...
T Consensus 114 EV-lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 114 EV-LYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp S--GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hH-hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 64 566654 4456677888889999999997653
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=104.75 Aligned_cols=102 Identities=15% Similarity=0.186 Sum_probs=73.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||||||+|.++..++ +..+ .+|+|+|.++.++ .+++... . .++ |+++.+|+.+.+.+ ++||+|+
T Consensus 52 ~~~~VLDiGcG~G~~a~~la---~~~~--~~v~giD~s~~~~~~a~~~~~-~--~~~-i~~~~~D~~~~~~~~~~FD~V~ 122 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYIN---EKYG--AHVHGVDICEKMVNIAKLRNS-D--KNK-IEFEANDILKKDFPENTFDMIY 122 (263)
T ss_pred CCCEEEEEcCCCChhhHHHH---hhcC--CEEEEEECCHHHHHHHHHHcC-c--CCc-eEEEECCcccCCCCCCCeEEEE
Confidence 56799999999999875432 3234 4999999999887 4443322 1 344 99999999887654 6899999
Q ss_pred ec-cccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 420 SE-LLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 420 SE-llgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
+. .+.++ ..+....++..+.+.|||||.++-..
T Consensus 123 s~~~l~h~-~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 123 SRDAILHL-SYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred EhhhHHhC-CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 93 22222 11234678999999999999988543
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-08 Score=105.11 Aligned_cols=112 Identities=22% Similarity=0.326 Sum_probs=79.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc--C-CCCCcEEEEEecccccC--CCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE--Q-WAQSDVTIVSEDMRTWN--APEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n--~-~~~~nV~vi~~D~~~~~--~p~k~ 415 (626)
+.++||++|||.|.++..++ ++.+. .+|++||.++.++ .+++..... + +.+.+|+++.+|.+++- ..+++
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l---~~~~~-~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~y 151 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVL---KHPSV-EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSF 151 (283)
T ss_pred CCCEEEEEecCchHHHHHHH---cCCCC-CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcc
Confidence 35689999999999986544 33233 4999999999877 666554321 2 23334999999998863 24789
Q ss_pred cEEEeccccccCCCCC--cHHHHHHHHHhcccCcEEEeccceee
Q psy17734 416 DIMVSELLGSFGDNEL--SPECLYAAQKYLKEDGISIPYNYTSY 457 (626)
Q Consensus 416 DiIVSEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP~~~t~y 457 (626)
|+|++++...++..+. ..+++..+.+.|+|||+++-+...-+
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~ 195 (283)
T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPF 195 (283)
T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcc
Confidence 9999987544433322 26788889999999999997655433
|
|
| >KOG1270|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.3e-09 Score=107.24 Aligned_cols=97 Identities=23% Similarity=0.232 Sum_probs=71.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCC-----CCcEEEEEecccccCCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWA-----QSDVTIVSEDMRTWNAPEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~-----~~nV~vi~~D~~~~~~p~k~ 415 (626)
.++.|||+|||+|+|+.-+++.+ ++|+|||.++.++ +|.+....+... -+ +++.+.|.++.. ++|
T Consensus 89 ~g~~ilDvGCGgGLLSepLArlg------a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~-l~~~~~~~E~~~--~~f 159 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARLG------AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYR-LEYEDTDVEGLT--GKF 159 (282)
T ss_pred CCceEEEeccCccccchhhHhhC------CeeEeecccHHHHHHHHHhhhcCchhcccccee-eehhhcchhhcc--ccc
Confidence 45789999999999997655544 3999999999887 666654333222 23 677778888776 469
Q ss_pred cEEEe-ccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 416 DIMVS-ELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 416 DiIVS-Ellgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|.||+ |.+.+.- ..+++++...+.|||+|.++
T Consensus 160 DaVvcsevleHV~---dp~~~l~~l~~~lkP~G~lf 192 (282)
T KOG1270|consen 160 DAVVCSEVLEHVK---DPQEFLNCLSALLKPNGRLF 192 (282)
T ss_pred ceeeeHHHHHHHh---CHHHHHHHHHHHhCCCCceE
Confidence 99987 5554432 24678999999999999765
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.3e-09 Score=105.97 Aligned_cols=93 Identities=29% Similarity=0.299 Sum_probs=70.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++.. +++ .|. .+|+|+|.++.++ .++++...++..+. +++..+|. +||+|++
T Consensus 119 ~~~~VLDiGcGsG~l~i~---~~~-~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~-~~~~~~~~-------~fD~Vva 185 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIA---AAK-LGA-KKVLAVDIDPQAVEAARENAELNGVELN-VYLPQGDL-------KADVIVA 185 (250)
T ss_pred CCCEEEEeCCcHHHHHHH---HHH-cCC-CeEEEEECCHHHHHHHHHHHHHcCCCce-EEEccCCC-------CcCEEEE
Confidence 467999999999998853 222 444 3799999999887 77888888887655 77666542 7999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+.. +....++..+.+.|||||.++-.
T Consensus 186 ni~~-----~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 186 NILA-----NPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred cCcH-----HHHHHHHHHHHHhcCCCcEEEEE
Confidence 6542 22456777888999999998854
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-08 Score=103.87 Aligned_cols=120 Identities=19% Similarity=0.216 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcE
Q psy17734 321 RYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDV 399 (626)
Q Consensus 321 ~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV 399 (626)
.|.+++...+... .+..+|||||||+|.++..+++.. . ..+|++||.+|.++ .+++....++..++ +
T Consensus 52 ~y~~~m~~~l~~~-------~~~~~vL~IG~G~G~l~~~l~~~~---p-~~~v~~VEidp~vi~~A~~~f~~~~~~~r-v 119 (262)
T PRK04457 52 AYTRAMMGFLLFN-------PRPQHILQIGLGGGSLAKFIYTYL---P-DTRQTAVEINPQVIAVARNHFELPENGER-F 119 (262)
T ss_pred HHHHHHHHHHhcC-------CCCCEEEEECCCHhHHHHHHHHhC---C-CCeEEEEECCHHHHHHHHHHcCCCCCCCc-e
Confidence 4667766544321 135689999999999986544332 1 25999999999877 55655444444455 9
Q ss_pred EEEEecccccC--CCCCccEEEeccccccCCCC-C-cHHHHHHHHHhcccCcEEEec
Q psy17734 400 TIVSEDMRTWN--APEKADIMVSELLGSFGDNE-L-SPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 400 ~vi~~D~~~~~--~p~k~DiIVSEllgsfg~~E-l-~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+++.+|.+++- .++++|+|+.+........+ + ..+++..+.+.|+|||+++-+
T Consensus 120 ~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 120 EVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred EEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 99999998752 34689999987543221111 2 268899999999999998754
|
|
| >KOG1540|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.6e-08 Score=98.55 Aligned_cols=139 Identities=22% Similarity=0.240 Sum_probs=96.5
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHh----hccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhc--CCccEEEEEeCCHH
Q psy17734 308 TYEVFEKDPIKYIRYQEAVQQALL----DRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEA--NRKVRVYAVEKNMS 381 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI~~al~----d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~--g~~~~V~AVE~np~ 381 (626)
++..|++=..+|+....++..-++ |..-......++..|||++||||-++...++..... ..+.+|+.+|.||.
T Consensus 62 V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~ 141 (296)
T KOG1540|consen 62 VHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPH 141 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHH
Confidence 455566555556655555443332 211112234467899999999999998877776531 12369999999998
Q ss_pred HH-HHHHHHHHcCCCCC-cEEEEEecccccCCC-CCccEEEeccccccCCCCC--cHHHHHHHHHhcccCcEEE
Q psy17734 382 AV-VGLKYKKEEQWAQS-DVTIVSEDMRTWNAP-EKADIMVSELLGSFGDNEL--SPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 382 a~-~a~~~~~~n~~~~~-nV~vi~~D~~~~~~p-~k~DiIVSEllgsfg~~El--~pe~L~~~~r~LkpgGi~I 450 (626)
+. ++++..++.++.+. .+.++.+|+++++.| ..+|+.++ .||...- .+..|..+.|.|||||++.
T Consensus 142 mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTi----afGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 142 MLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTI----AFGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred HHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEE----ecceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 77 77776655555432 399999999999987 68999876 4554333 3668999999999999765
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-08 Score=99.81 Aligned_cols=95 Identities=17% Similarity=0.177 Sum_probs=68.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC---------CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN---------AP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~---------~p 412 (626)
++.+|||+|||+|.++..+++ ..+...+|+|||.+++ +... +|+++++|+++.. .+
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~---~~~~~~~V~aVDi~~~----------~~~~--~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVT---QIGDKGRVIACDILPM----------DPIV--GVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHH---HcCCCceEEEEecccc----------cCCC--CcEEEecCCCChHHHHHHHHHhCC
Confidence 567899999999999865443 3333359999999982 1222 5999999999853 24
Q ss_pred CCccEEEeccccccCCCCCc---------HHHHHHHHHhcccCcEEEe
Q psy17734 413 EKADIMVSELLGSFGDNELS---------PECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~---------pe~L~~~~r~LkpgGi~IP 451 (626)
+++|+|+|+..-.+..+... ...|..+.++|||||.++-
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 68999999874444332211 2467888899999999864
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.1e-08 Score=104.17 Aligned_cols=111 Identities=19% Similarity=0.296 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCc
Q psy17734 319 YIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSD 398 (626)
Q Consensus 319 y~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~n 398 (626)
|....+++...+.+.+. .+..+|||+|||+|.++..++......+ ..+|+|+|.|+.++...+.. . . +
T Consensus 67 y~~l~~~i~~~l~~~l~-----~~~~~vLDiGcG~G~~~~~l~~~~~~~~-~~~v~giD~s~~~l~~A~~~----~-~-~ 134 (272)
T PRK11088 67 YQPLRDAVANLLAERLD-----EKATALLDIGCGEGYYTHALADALPEIT-TMQLFGLDISKVAIKYAAKR----Y-P-Q 134 (272)
T ss_pred hHHHHHHHHHHHHHhcC-----CCCCeEEEECCcCCHHHHHHHHhccccc-CCeEEEECCCHHHHHHHHHh----C-C-C
Confidence 44445555555544332 1346899999999999865544432211 13899999999887332221 1 2 4
Q ss_pred EEEEEecccccCCC-CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 399 VTIVSEDMRTWNAP-EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 399 V~vi~~D~~~~~~p-~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
++++.+|+.+++.+ +.||+|++-. .+..+..+.|.|||||.++
T Consensus 135 ~~~~~~d~~~lp~~~~sfD~I~~~~---------~~~~~~e~~rvLkpgG~li 178 (272)
T PRK11088 135 VTFCVASSHRLPFADQSLDAIIRIY---------APCKAEELARVVKPGGIVI 178 (272)
T ss_pred CeEEEeecccCCCcCCceeEEEEec---------CCCCHHHHHhhccCCCEEE
Confidence 89999999988764 6899999832 1334677889999999987
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-08 Score=110.84 Aligned_cols=111 Identities=15% Similarity=0.190 Sum_probs=82.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCC-CCcEEEEEecccccC-----CCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWA-QSDVTIVSEDMRTWN-----APEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~-~~nV~vi~~D~~~~~-----~p~k 414 (626)
++++|||+|||+|.++.. |+. .|+ .+|++||.|+.++ .++++...|+++ ++ ++++++|+.++- ..++
T Consensus 220 ~g~rVLDlfsgtG~~~l~---aa~-~ga-~~V~~VD~s~~al~~a~~N~~~Ngl~~~~-v~~i~~D~~~~l~~~~~~~~~ 293 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVS---ALM-GGC-SQVVSVDTSQEALDIARQNVELNKLDLSK-AEFVRDDVFKLLRTYRDRGEK 293 (396)
T ss_pred CCCeEEEeccCCCHHHHH---HHh-CCC-CEEEEEECCHHHHHHHHHHHHHcCCCCCc-EEEEEccHHHHHHHHHhcCCC
Confidence 457899999999999853 332 233 4999999999887 888888889986 45 999999998862 1358
Q ss_pred ccEEEeccccccCCCCC--------cHHHHHHHHHhcccCcEEEeccceeeEE
Q psy17734 415 ADIMVSELLGSFGDNEL--------SPECLYAAQKYLKEDGISIPYNYTSYIA 459 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El--------~pe~L~~~~r~LkpgGi~IP~~~t~y~a 459 (626)
||+||+++.- |..... ..+++..+.++|+|||+++-++++-++.
T Consensus 294 fDlVilDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~ 345 (396)
T PRK15128 294 FDVIVMDPPK-FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMT 345 (396)
T ss_pred CCEEEECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCC
Confidence 9999999873 433221 2234445678999999999887766553
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.6e-08 Score=98.96 Aligned_cols=100 Identities=19% Similarity=0.256 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIVS 420 (626)
+..+|||+|||+|.++..+++.+ ...+|+++|.++.+....+... .. +++++.+|+.+... +++||+|++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~----~~~~~~~~D~~~~~~~~~~~~~----~~-~~~~~~~d~~~~~~~~~~fD~vi~ 104 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF----PQAEFIALDISAGMLAQAKTKL----SE-NVQFICGDAEKLPLEDSSFDLIVS 104 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC----CCCcEEEEeChHHHHHHHHHhc----CC-CCeEEecchhhCCCCCCceeEEEE
Confidence 34689999999999986544433 2358999999997763333221 13 49999999998874 468999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..+-.+. .....++..+.+.|||||.++-.
T Consensus 105 ~~~l~~~--~~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 105 NLALQWC--DDLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred hhhhhhc--cCHHHHHHHHHHHcCCCcEEEEE
Confidence 6543222 12456889999999999988743
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.8e-08 Score=103.97 Aligned_cols=104 Identities=23% Similarity=0.251 Sum_probs=74.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEecc
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSEL 422 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEl 422 (626)
.+|||+|||+|.++..++.... ..+|+|+|.|+.++ .++++...++..++ |+++++|+.+.....+||+|||++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~----~~~v~avDis~~al~~a~~n~~~~~~~~~-v~~~~~d~~~~~~~~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP----NAEVIAVDISPDALAVAEENAEKNQLEHR-VEFIQSNLFEPLAGQKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCc-EEEEECchhccCcCCCccEEEECC
Confidence 5899999999999865433321 25999999999887 88888888888766 999999987643234899999975
Q ss_pred ccc--------------------cCCCCC---cHHHHHHHHHhcccCcEEEec
Q psy17734 423 LGS--------------------FGDNEL---SPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 423 lgs--------------------fg~~El---~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.-- ++..++ ...++..+.++|+|||.++-.
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 310 011111 124566777899999987633
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-08 Score=108.48 Aligned_cols=98 Identities=21% Similarity=0.208 Sum_probs=72.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++.. +++..| .+|+|+|.|+.+. .+.+.. .+. +|++..+|.+++ +++||.|+|
T Consensus 167 ~g~rVLDIGcG~G~~a~~---la~~~g--~~V~giDlS~~~l~~A~~~~--~~l---~v~~~~~D~~~l--~~~fD~Ivs 234 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARY---AAEHYG--VSVVGVTISAEQQKLAQERC--AGL---PVEIRLQDYRDL--NGQFDRIVS 234 (383)
T ss_pred CCCEEEEeCCCccHHHHH---HHHHCC--CEEEEEeCCHHHHHHHHHHh--ccC---eEEEEECchhhc--CCCCCEEEE
Confidence 567999999999999854 444445 4999999999877 554443 233 389999999877 468999998
Q ss_pred cc-ccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 EL-LGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 El-lgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
-. +.+++ .+..+.++..+.+.|||||.++-+
T Consensus 235 ~~~~ehvg-~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 235 VGMFEHVG-PKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred eCchhhCC-hHHHHHHHHHHHHHcCCCcEEEEE
Confidence 43 22222 222467889999999999998765
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-08 Score=99.01 Aligned_cols=97 Identities=30% Similarity=0.311 Sum_probs=70.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|+|+.||-|+++.. +|+..+. .+|+|+|+||.|+ ..+++++.|++.++ |+++++|.+++.....+|-|+.
T Consensus 101 ~~e~VlD~faGIG~f~l~---~ak~~~~-~~V~A~d~Np~a~~~L~~Ni~lNkv~~~-i~~~~~D~~~~~~~~~~drvim 175 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLP---IAKHGKA-KRVYAVDLNPDAVEYLKENIRLNKVENR-IEVINGDAREFLPEGKFDRVIM 175 (200)
T ss_dssp TT-EEEETT-TTTTTHHH---HHHHT-S-SEEEEEES-HHHHHHHHHHHHHTT-TTT-EEEEES-GGG---TT-EEEEEE
T ss_pred cceEEEEccCCccHHHHH---HhhhcCc-cEEEEecCCHHHHHHHHHHHHHcCCCCe-EEEEcCCHHHhcCccccCEEEE
Confidence 567999999999999964 4442222 5899999999998 66778889999988 9999999999876789999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEE
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGIS 449 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~ 449 (626)
.++. .+.++|+.+.+.+|+||++
T Consensus 176 ~lp~------~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 176 NLPE------SSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp --TS------SGGGGHHHHHHHEEEEEEE
T ss_pred CChH------HHHHHHHHHHHHhcCCcEE
Confidence 7653 4567899999999999875
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.2e-08 Score=99.40 Aligned_cols=98 Identities=20% Similarity=0.259 Sum_probs=68.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHH-HHHHHHHcCCCCCcEEEEEeccccc----CCCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVV-GLKYKKEEQWAQSDVTIVSEDMRTW----NAPEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~-a~~~~~~n~~~~~nV~vi~~D~~~~----~~p~k~D 416 (626)
++.+|||+|||+|.++..++ +..+ ..+|||+|.++.++. ..+..+.. . ||+++.+|..+. ..++++|
T Consensus 72 ~g~~VlD~G~G~G~~~~~la---~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~--nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVS---DIVE-EGVVYAVEFAPRPMRELLEVAEER--K--NIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred CCCEEEEEccCCCHHHHHHH---HhcC-CCeEEEEECCHHHHHHHHHHhhhc--C--CcEEEECCCCCcchhhhccccCC
Confidence 56799999999999986543 3333 249999999997763 43333222 2 699999998752 2346799
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+|+++.. +.......+..+.++|||||.++-
T Consensus 144 ~i~~d~~----~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 144 VIYQDVA----QPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred EEEECCC----ChhHHHHHHHHHHHhcCCCcEEEE
Confidence 9998642 111112357889999999998654
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.2e-08 Score=95.21 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=74.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++.. + .+|+|+|.++.+. .++++...+++.+++++++.+|+.+...+.++|+|++
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~----~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~ 96 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN----G--KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILF 96 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh----c--ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEE
Confidence 4578999999999998654433 3 4999999999876 6777777777764348999999877544458999998
Q ss_pred ccccccC---------------CCC----CcHHHHHHHHHhcccCcEEEe
Q psy17734 421 ELLGSFG---------------DNE----LSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ellgsfg---------------~~E----l~pe~L~~~~r~LkpgGi~IP 451 (626)
+..-... ... ....++..+.++|||||.++.
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 7532110 000 123467788899999998764
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.8e-08 Score=100.41 Aligned_cols=104 Identities=18% Similarity=0.128 Sum_probs=73.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
+.+|||+|||+|.++..+++..... ...+|+|||+++.|. .++++. . ++.++++|+.+.....+||+|||+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~-~~~~V~aVEID~~Al~~Ar~n~------~-~~~~~~~D~~~~~~~~~FDlIIsN 121 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYA-KPREIVCVELNHTYYKLGKRIV------P-EATWINADALTTEFDTLFDMAISN 121 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccC-CCcEEEEEECCHHHHHHHHhhc------c-CCEEEEcchhcccccCCccEEEEC
Confidence 4689999999999986544432111 125999999999887 555432 2 389999999887766799999999
Q ss_pred cccccC------C-C---CCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 422 LLGSFG------D-N---ELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 422 llgsfg------~-~---El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+.-.-. . . +....++..+.+++++|+.++|...
T Consensus 122 PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~ 164 (241)
T PHA03412 122 PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMS 164 (241)
T ss_pred CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccc
Confidence 852211 0 1 1124577888888999999999843
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.8e-08 Score=104.85 Aligned_cols=99 Identities=14% Similarity=0.126 Sum_probs=73.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEecc
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSEL 422 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEl 422 (626)
.+|||+|||+|.++..+++. . ...+|+++|.|+.|+ .++++.+.|+.. .+++.+|+.+. .+++||+|||++
T Consensus 198 g~VLDlGCG~G~ls~~la~~---~-p~~~v~~vDis~~Al~~A~~nl~~n~l~---~~~~~~D~~~~-~~~~fDlIvsNP 269 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARH---S-PKIRLTLSDVSAAALESSRATLAANGLE---GEVFASNVFSD-IKGRFDMIISNP 269 (342)
T ss_pred CeEEEeccCcCHHHHHHHHh---C-CCCEEEEEECCHHHHHHHHHHHHHcCCC---CEEEEcccccc-cCCCccEEEECC
Confidence 47999999999998643332 2 225899999999888 677777778763 66788887653 357899999987
Q ss_pred ccccCCCC---CcHHHHHHHHHhcccCcEEE
Q psy17734 423 LGSFGDNE---LSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 423 lgsfg~~E---l~pe~L~~~~r~LkpgGi~I 450 (626)
.-+.+... ...+++..+.++|||||.++
T Consensus 270 PFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~ 300 (342)
T PRK09489 270 PFHDGIQTSLDAAQTLIRGAVRHLNSGGELR 300 (342)
T ss_pred CccCCccccHHHHHHHHHHHHHhcCcCCEEE
Confidence 53322221 13567888899999999875
|
|
| >KOG4300|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.4e-08 Score=93.54 Aligned_cols=120 Identities=18% Similarity=0.133 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCC
Q psy17734 319 YIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQS 397 (626)
Q Consensus 319 y~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~ 397 (626)
.+.|++.|...+..++-. ....-||+||||||..-.+ -. -.+..+|+.+|.|+++. .+.+.++++.-.
T Consensus 57 ~~~ykrelFs~i~~~~gk----~~K~~vLEvgcGtG~Nfkf----y~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~-- 125 (252)
T KOG4300|consen 57 ADSYKRELFSGIYYFLGK----SGKGDVLEVGCGTGANFKF----YP-WKPINSVTCLDPNEKMEEIADKSAAEKKPL-- 125 (252)
T ss_pred HHHHHHHHHhhhHHHhcc----cCccceEEecccCCCCccc----cc-CCCCceEEEeCCcHHHHHHHHHHHhhccCc--
Confidence 355677777665543321 1223589999999987422 11 01225999999999887 666665555332
Q ss_pred cEE-EEEecccccC--CCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 398 DVT-IVSEDMRTWN--APEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 398 nV~-vi~~D~~~~~--~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+++ ++.++.+++. ...++|.||+-+. ....|...+.|....|+|+|||++|-
T Consensus 126 ~~~~fvva~ge~l~~l~d~s~DtVV~Tlv--LCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 126 QVERFVVADGENLPQLADGSYDTVVCTLV--LCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred ceEEEEeechhcCcccccCCeeeEEEEEE--EeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 488 9999999987 4589999998653 22345556789999999999999773
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.2e-08 Score=96.94 Aligned_cols=103 Identities=12% Similarity=0.187 Sum_probs=75.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC---CC-CCccE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---AP-EKADI 417 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---~p-~k~Di 417 (626)
..+|||||||+|.++..+++. . ....|+|||.++.++ .+.++....++. ||+++++|+.++. .+ +.+|.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~---~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~--ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQ---N-PDKNFLGIEIHTPIVLAANNKANKLGLK--NLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CceEEEeCCCccHHHHHHHHh---C-CCCCEEEEEeeHHHHHHHHHHHHHhCCC--CEEEEccCHHHHHHhhCCCCceeE
Confidence 468999999999998643332 2 225999999999776 667776677775 6999999998753 23 47999
Q ss_pred EEeccccccCC-----CCC-cHHHHHHHHHhcccCcEEEe
Q psy17734 418 MVSELLGSFGD-----NEL-SPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 418 IVSEllgsfg~-----~El-~pe~L~~~~r~LkpgGi~IP 451 (626)
|++.....+.. +.. .++++..+.+.|||||.++-
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~ 130 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHF 130 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEE
Confidence 98865432211 112 26789999999999999764
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.4e-08 Score=94.10 Aligned_cols=95 Identities=22% Similarity=0.252 Sum_probs=66.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC---------CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN---------AP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~---------~p 412 (626)
++.+|||+|||+|.++..++... ....+|+|+|.|+++ .. . +++++++|+.+.. ..
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~---~~~~~v~~vDis~~~----------~~-~-~i~~~~~d~~~~~~~~~l~~~~~~ 96 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQV---GGKGRVIAVDLQPMK----------PI-E-NVDFIRGDFTDEEVLNKIRERVGD 96 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHh---CCCceEEEEeccccc----------cC-C-CceEEEeeCCChhHHHHHHHHhCC
Confidence 57899999999999986544332 222489999999854 11 2 4899999998753 23
Q ss_pred CCccEEEeccccc-cCCC--C------CcHHHHHHHHHhcccCcEEEe
Q psy17734 413 EKADIMVSELLGS-FGDN--E------LSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 413 ~k~DiIVSEllgs-fg~~--E------l~pe~L~~~~r~LkpgGi~IP 451 (626)
+++|+|+++.... .+.. . ....++..+.+.|+|||.++-
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 5799999864221 1111 1 124578888999999999774
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-07 Score=93.34 Aligned_cols=100 Identities=20% Similarity=0.176 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc-C-CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW-N-APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~-~-~p~k~DiI 418 (626)
++.+|||+|||+|.++..+++.. . ..+|+|||.++.+. .+.++.+.++.. +|+++.+|+.+. . ....+|.+
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~---~-~~~V~~vD~s~~~~~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~d~v 113 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLC---P-KGRVIAIERDEEVVNLIRRNCDRFGVK--NVEVIEGSAPECLAQLAPAPDRV 113 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHC---C-CCEEEEEeCCHHHHHHHHHHHHHhCCC--CeEEEECchHHHHhhCCCCCCEE
Confidence 56799999999999986543322 1 25999999999877 666666667764 499999998752 2 22346776
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
+.+. .+....++..+.+.|+|||.++-..
T Consensus 114 ~~~~------~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 114 CIEG------GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred EEEC------CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 5531 2234678899999999999987553
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-07 Score=96.97 Aligned_cols=103 Identities=23% Similarity=0.192 Sum_probs=73.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
+.+|||+|||+|.++..++.. .. ..+|+|+|.++.++ .++++...+++. +++++++|..+....+++|+|+++
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~---~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~Vi~n 161 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKE---RP-DARVTAVDISPEALAVARKNAARLGLD--NVTFLQSDWFEPLPGGKFDLIVSN 161 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHH---CC-CCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEECchhccCcCCceeEEEEC
Confidence 458999999999998654432 22 25999999999887 677777777775 499999999774445789999997
Q ss_pred ccccc-C-----CC-----CC-------------cHHHHHHHHHhcccCcEEEe
Q psy17734 422 LLGSF-G-----DN-----EL-------------SPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 422 llgsf-g-----~~-----El-------------~pe~L~~~~r~LkpgGi~IP 451 (626)
+.-.. . .. |. ...++..+.++|+|||.++-
T Consensus 162 pPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 162 PPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred CCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 64211 0 00 00 12456778889999998764
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-07 Score=94.00 Aligned_cols=103 Identities=16% Similarity=0.213 Sum_probs=72.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..++ ...+...+|+|+|.++.+. .+++. . ..... +++++.+|+.+++.+ .+||+|+
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a---~~~~~~~~v~~~d~~~~~~~~a~~~-~-~~~~~-~~~~~~~d~~~~~~~~~~~D~v~ 92 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELA---RRVGPEGRVVGIDRSEAMLALAKER-A-AGLGP-NVEFVRGDADGLPFPDGSFDAVR 92 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHH---HhcCCCcEEEEEeCCHHHHHHHHHH-h-hCCCC-ceEEEecccccCCCCCCCceEEE
Confidence 56799999999999886433 3332235999999999876 44443 2 22233 499999999887654 6899999
Q ss_pred eccc-cccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 420 SELL-GSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 420 SEll-gsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
+..+ .+. .....++..+.+.|||||.++-..
T Consensus 93 ~~~~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 93 SDRVLQHL---EDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred Eechhhcc---CCHHHHHHHHHHHhcCCcEEEEEe
Confidence 8543 222 124568899999999999877543
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-07 Score=100.19 Aligned_cols=114 Identities=14% Similarity=0.224 Sum_probs=81.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--cCCCCCcEEEEEecccccC--C-CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--EQWAQSDVTIVSEDMRTWN--A-PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--n~~~~~nV~vi~~D~~~~~--~-p~k~ 415 (626)
+.++||+||||.|.++..+++ +.+. .+|+.||+++..+ .+++.... .++.+.+|+++.+|.+++- . .+++
T Consensus 91 ~pkrVLiIGgG~G~~~rellk---~~~v-~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~y 166 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIAR---HSSV-EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTY 166 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHh---CCCC-CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCC
Confidence 357899999999999865443 2222 4899999999776 66665432 2455545999999987752 2 3689
Q ss_pred cEEEeccccccCCCC-C-cHHHHHHHHHhcccCcEEEeccceeeEE
Q psy17734 416 DIMVSELLGSFGDNE-L-SPECLYAAQKYLKEDGISIPYNYTSYIA 459 (626)
Q Consensus 416 DiIVSEllgsfg~~E-l-~pe~L~~~~r~LkpgGi~IP~~~t~y~a 459 (626)
|+|+++.....+... + ..++++.+.+.|+|||+++-+....+..
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~ 212 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLH 212 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccc
Confidence 999998754333222 2 3678999999999999999887665554
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.6e-08 Score=97.50 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=67.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIV 419 (626)
++.+|||+|||+|.++..++...+..|...+|+|+|.++.++ .+++....+ ++++...+..++.. ++++|+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-----GVTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-----CCeEEEEecccccccCCCccEEE
Confidence 457899999999999876665554444445999999999887 444332211 36666666666543 47899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+...-+....+..++++..+.+.++ ++++|
T Consensus 135 ~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 135 SNHFLHHLDDAEVVRLLADSAALAR-RLVLH 164 (232)
T ss_pred ECCeeecCChHHHHHHHHHHHHhcC-eeEEE
Confidence 9643222222223568888888887 44443
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.8e-08 Score=108.10 Aligned_cols=101 Identities=19% Similarity=0.182 Sum_probs=74.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||||||+|.++..+ ++..+ .+|+|+|.++.++ .++++. .+...+ |+++.+|+.+...+ ++||+|+
T Consensus 266 ~~~~vLDiGcG~G~~~~~l---a~~~~--~~v~gvDiS~~~l~~A~~~~--~~~~~~-v~~~~~d~~~~~~~~~~fD~I~ 337 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYM---AENFD--VHVVGIDLSVNMISFALERA--IGRKCS-VEFEVADCTKKTYPDNSFDVIY 337 (475)
T ss_pred CCCEEEEEeccCCHHHHHH---HHhcC--CEEEEEECCHHHHHHHHHHh--hcCCCc-eEEEEcCcccCCCCCCCEEEEE
Confidence 4678999999999987543 33334 4999999999877 554443 244455 99999999988764 5799999
Q ss_pred ecc-ccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 420 SEL-LGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 420 SEl-lgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
|.- +.++ ...+.++..+.+.|||||.++-..
T Consensus 338 s~~~l~h~---~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 338 SRDTILHI---QDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred ECCccccc---CCHHHHHHHHHHHcCCCeEEEEEE
Confidence 942 2222 224578899999999999988553
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.9e-08 Score=97.94 Aligned_cols=99 Identities=20% Similarity=0.151 Sum_probs=70.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++ + .+ .+|+|+|.++.++ .+++....++..++ ++++.+|+.+.. +++|+|++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la---~-~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~-i~~~~~d~~~~~--~~fD~ii~ 125 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELA---K-RG--AIVKAVDISEQMVQMARNRAQGRDVAGN-VEFEVNDLLSLC--GEFDIVVC 125 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHH---H-CC--CEEEEEECCHHHHHHHHHHHHhcCCCCc-eEEEECChhhCC--CCcCEEEE
Confidence 56799999999999986433 2 23 4999999999887 55665555655455 999999998876 78999988
Q ss_pred c-cccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 421 E-LLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 E-llgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
- .+-++ ..+.....+..+.+.+++++++.
T Consensus 126 ~~~l~~~-~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 126 MDVLIHY-PASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred hhHHHhC-CHHHHHHHHHHHHHHhCCCEEEE
Confidence 3 33222 22334556777777888766555
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.5e-08 Score=96.66 Aligned_cols=101 Identities=11% Similarity=0.077 Sum_probs=71.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiI 418 (626)
++.+|||+|||+|.++..+ +++. + .+|++||.++.++ .++++++.++.. +++++++|+.++- ..++||+|
T Consensus 53 ~~~~vLDl~~GsG~l~l~~---lsr~-a-~~V~~vE~~~~a~~~a~~Nl~~~~~~--~v~~~~~D~~~~l~~~~~~fDlV 125 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEA---LSRY-A-AGATLLEMDRAVAQQLIKNLATLKAG--NARVVNTNALSFLAQPGTPHNVV 125 (199)
T ss_pred CCCEEEEcCCCccHHHHHH---HHcC-C-CEEEEEECCHHHHHHHHHHHHHhCCC--cEEEEEchHHHHHhhcCCCceEE
Confidence 3568999999999999643 2222 2 4999999999887 777787778764 4999999998742 22469999
Q ss_pred EeccccccCCCCCcHHHHHHHHH--hcccCcEEEec
Q psy17734 419 VSELLGSFGDNELSPECLYAAQK--YLKEDGISIPY 452 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r--~LkpgGi~IP~ 452 (626)
++++.-. ....+++++.+.. +|+|+|+++-+
T Consensus 126 ~~DPPy~---~g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 126 FVDPPFR---KGLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred EECCCCC---CChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 9999721 1123556665543 46777776633
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-07 Score=94.61 Aligned_cols=93 Identities=22% Similarity=0.205 Sum_probs=68.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc-CCCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW-NAPEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~-~~p~k~DiIV 419 (626)
++.+|||+|||+|.++..++... .+|+++|.++.+. .++++..+.++. +|+++.+|..+. ...++||+|+
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~------~~v~~vd~~~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~fD~I~ 149 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV------RRVFSVERIKTLQWEAKRRLKQLGLH--NVSVRHGDGWKGWPAYAPFDRIL 149 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh------CEEEEEeCCHHHHHHHHHHHHHCCCC--ceEEEECCcccCCCcCCCcCEEE
Confidence 56799999999999985433322 2899999999876 666776677775 599999998663 2236899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+.. ..+.+.....+.|+|||.++
T Consensus 150 ~~~--------~~~~~~~~l~~~L~~gG~lv 172 (212)
T PRK00312 150 VTA--------AAPEIPRALLEQLKEGGILV 172 (212)
T ss_pred Ecc--------CchhhhHHHHHhcCCCcEEE
Confidence 842 11223455678899999876
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.6e-08 Score=100.75 Aligned_cols=137 Identities=16% Similarity=0.165 Sum_probs=89.5
Q ss_pred hhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCch----HHHHHHHHHhhc-CCccEEEEEeCCHHHH-HH
Q psy17734 312 FEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGP----LVTASLNAAKEA-NRKVRVYAVEKNMSAV-VG 385 (626)
Q Consensus 312 fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~----Ls~~al~Aa~~~-g~~~~V~AVE~np~a~-~a 385 (626)
|-.|+..++..++.+...+.... ...++.+|+|+|||||- +++.++++.... +.+.+|+|+|.|+.++ .|
T Consensus 73 FfR~~~~~~~l~~~vlp~l~~~~----~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~A 148 (264)
T smart00138 73 FFRESKHFEALEEKVLPLLIASR----RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKA 148 (264)
T ss_pred ccCCcHHHHHHHHHHhHHHHHhc----CCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHH
Confidence 66777776666666555443321 11245799999999995 555444443221 1136999999999887 55
Q ss_pred HHHHH----Hc----------------------CCCCCcEEEEEecccccCC-CCCccEEEec-cccccCCCCCcHHHHH
Q psy17734 386 LKYKK----EE----------------------QWAQSDVTIVSEDMRTWNA-PEKADIMVSE-LLGSFGDNELSPECLY 437 (626)
Q Consensus 386 ~~~~~----~n----------------------~~~~~nV~vi~~D~~~~~~-p~k~DiIVSE-llgsfg~~El~pe~L~ 437 (626)
++.+- .. +..+. |++..+|+.+... .++||+|+|- .+.+| +.+....++.
T Consensus 149 r~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~-V~F~~~dl~~~~~~~~~fD~I~crnvl~yf-~~~~~~~~l~ 226 (264)
T smart00138 149 RAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKER-VRFAKHNLLAESPPLGDFDLIFCRNVLIYF-DEPTQRKLLN 226 (264)
T ss_pred HcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCc-CEEeeccCCCCCCccCCCCEEEechhHHhC-CHHHHHHHHH
Confidence 44210 00 11234 9999999998765 4789999994 44443 3344467899
Q ss_pred HHHHhcccCcEEEeccc
Q psy17734 438 AAQKYLKEDGISIPYNY 454 (626)
Q Consensus 438 ~~~r~LkpgGi~IP~~~ 454 (626)
.+.+.|||||.++-...
T Consensus 227 ~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 227 RFAEALKPGGYLFLGHS 243 (264)
T ss_pred HHHHHhCCCeEEEEECc
Confidence 99999999999875543
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.4e-09 Score=92.53 Aligned_cols=94 Identities=23% Similarity=0.271 Sum_probs=55.4
Q ss_pred EEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc---CCCCCccEEEec-
Q psy17734 347 MVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW---NAPEKADIMVSE- 421 (626)
Q Consensus 347 LDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~---~~p~k~DiIVSE- 421 (626)
||+|||+|.++..++.... ..+++++|.|+.++ .+++.....+.. +++.+..+..+. ..+++||+|++-
T Consensus 1 LdiGcG~G~~~~~l~~~~~----~~~~~~~D~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP----DARYTGVDISPSMLERARERLAELGND--NFERLRFDVLDLFDYDPPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-----EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---CCC----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHhhhcCCc--ceeEEEeecCChhhcccccccceehhhh
Confidence 7999999999976555431 25999999999887 566555554432 245555444443 223599999884
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEE
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGIS 449 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~ 449 (626)
.+.++ +...+++..+.+.|||||++
T Consensus 75 vl~~l---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLHHL---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TTS-----S-HHHHHHHHTTT-TSS-EE
T ss_pred hHhhh---hhHHHHHHHHHHHcCCCCCC
Confidence 33333 55678999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-07 Score=94.83 Aligned_cols=104 Identities=16% Similarity=0.171 Sum_probs=75.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..++... +...+|+++|.++.+. .+.+....+++... ++++.+|+.+...+ +++|+|+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~D~I~ 126 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAV---GKTGEVVGLDFSEGMLAVGREKLRDLGLSGN-VEFVQGDAEALPFPDNSFDAVT 126 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHc---CCCCeEEEEeCCHHHHHHHHHhhcccccccC-eEEEecccccCCCCCCCccEEE
Confidence 45789999999999986544433 2125999999999776 55555555555555 99999999887653 6899998
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+... +......+.+++.+.+.|+|||.++-
T Consensus 127 ~~~~--l~~~~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 127 IAFG--LRNVPDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred Eecc--cccCCCHHHHHHHHHHhccCCcEEEE
Confidence 7321 11122346789999999999998763
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=5e-08 Score=114.09 Aligned_cols=106 Identities=12% Similarity=0.110 Sum_probs=81.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCC-CCcEEEEEecccccC--CCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWA-QSDVTIVSEDMRTWN--APEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~-~~nV~vi~~D~~~~~--~p~k~Di 417 (626)
++++|||+|||+|.++..++. .|+ .+|++||.|+.++ .++++.+.|++. ++ ++++++|+.++- ..++||+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~----~Ga-~~V~~vD~s~~al~~a~~N~~~ng~~~~~-v~~i~~D~~~~l~~~~~~fDl 611 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAAL----GGA-KSTTTVDMSNTYLEWAERNFALNGLSGRQ-HRLIQADCLAWLKEAREQFDL 611 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHH----CCC-CEEEEEeCCHHHHHHHHHHHHHhCCCccc-eEEEEccHHHHHHHcCCCcCE
Confidence 357899999999999965443 243 3899999999887 888899899986 56 999999998753 2468999
Q ss_pred EEeccccccCCCCC----------cHHHHHHHHHhcccCcEEEeccc
Q psy17734 418 MVSELLGSFGDNEL----------SPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 418 IVSEllgsfg~~El----------~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
||+++. +|...+. ..+++..+.+.|+|||+++-+..
T Consensus 612 IilDPP-~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 612 IFIDPP-TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred EEECCC-CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 999976 3332221 24566777889999999876544
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=105.65 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=78.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|..+..++.... ...+|+|+|.|+.+. .++++.++.+.. +|+++.+|++++..+++||.|+.
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~---~~~~V~avD~s~~~l~~~~~~~~~~g~~--~v~~~~~Da~~~~~~~~fD~Vl~ 324 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQ---NRGQITAVDRYPQKLEKIRSHASALGIT--IIETIEGDARSFSPEEQPDAILL 324 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhC---CCcEEEEEECCHHHHHHHHHHHHHhCCC--eEEEEeCcccccccCCCCCEEEE
Confidence 567999999999998865444332 124999999999877 666777777774 59999999998865578999998
Q ss_pred ccc----cccCCC-C----C-----------cHHHHHHHHHhcccCcEEEeccc
Q psy17734 421 ELL----GSFGDN-E----L-----------SPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 421 Ell----gsfg~~-E----l-----------~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+.. |.+..+ + . ..++|..+.+.|||||+++-+.+
T Consensus 325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 753 211111 0 0 12468888899999999986443
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.4e-08 Score=108.60 Aligned_cols=105 Identities=20% Similarity=0.214 Sum_probs=75.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
..+|||+|||+|.++..++... .+ .+|+|+|.|+.|+ .++++.+.++..++ |+++++|+.+....++||+|||+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~--p~--~~v~avDis~~al~~A~~N~~~~~l~~~-v~~~~~D~~~~~~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL--PN--ANVIATDISLDAIEVAKSNAIKYEVTDR-IQIIHSNWFENIEKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC--CC--CeEEEEECCHHHHHHHHHHHHHcCCccc-eeeeecchhhhCcCCCccEEEEC
Confidence 4689999999999986433321 12 5999999999887 78888888888777 99999998654334689999997
Q ss_pred cccc---------------------cCCCCCc---HHHHHHHHHhcccCcEEEec
Q psy17734 422 LLGS---------------------FGDNELS---PECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 422 llgs---------------------fg~~El~---pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.-. ++...++ ..++..+.++|+|||.++-.
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 5310 1111111 23556677899999998754
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=97.01 Aligned_cols=104 Identities=16% Similarity=0.115 Sum_probs=79.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-------APE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-------~p~ 413 (626)
+.++|||+|||+|.-+..++.+.. ...+|+++|.++.+. .++++.+.+++.++ |+++.+|..+.- ..+
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~---~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~-i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALP---EDGRITAIDIDKEAYEVGLEFIKKAGVDHK-INFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCc-EEEEEccHHHHHHHHHhCCCCC
Confidence 457899999999987654444322 125999999999776 88899999999887 999999998751 136
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+||+|+.+.- .+..+++++.+.+.|+|||+++-+..
T Consensus 144 ~fD~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 144 EFDFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred CCCEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 8999977421 12346788888899999999987654
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-07 Score=91.88 Aligned_cols=104 Identities=13% Similarity=0.002 Sum_probs=75.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc-C-C--C-CCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW-N-A--P-EKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~-~-~--p-~k~ 415 (626)
++.+|||++||+|.++.. |+.+ |+ .+|++||.++.+. .++++++.++..++ ++++++|..++ . . . ..+
T Consensus 49 ~g~~vLDLfaGsG~lgle---a~sr-ga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~-~~~~~~D~~~~l~~~~~~~~~~ 122 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEE---ALSR-GA-KVAFLEEDDRKANQTLKENLALLKSGEQ-AEVVRNSALRALKFLAKKPTFD 122 (189)
T ss_pred CCCEEEEecCCCcHHHHH---HHhC-CC-CEEEEEeCCHHHHHHHHHHHHHhCCccc-EEEEehhHHHHHHHhhccCCCc
Confidence 467899999999999954 4443 33 4899999999887 67788888888766 99999999653 1 1 1 247
Q ss_pred cEEEeccccccCCCCCcHHHHHHHH--HhcccCcEEEeccc
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQ--KYLKEDGISIPYNY 454 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~--r~LkpgGi~IP~~~ 454 (626)
|+|+..+. |. ....++++..+. .+|+++|++|-...
T Consensus 123 dvv~~DPP--y~-~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 123 NVIYLDPP--FF-NGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred eEEEECcC--CC-CCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 88888774 32 233466666554 36889998885543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=101.35 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||.|||+|.+... ++. .+ .+|+|+|.++.++ .++++.+..+.. +++++.+|+++++.+ +++|+||
T Consensus 182 ~g~~vLDp~cGtG~~lie---aa~-~~--~~v~g~Di~~~~~~~a~~nl~~~g~~--~i~~~~~D~~~l~~~~~~~D~Iv 253 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIE---AGL-MG--AKVIGCDIDWKMVAGARINLEHYGIE--DFFVKRGDATKLPLSSESVDAIA 253 (329)
T ss_pred CcCEEEECCCCCCHHHHH---HHH-hC--CeEEEEcCCHHHHHHHHHHHHHhCCC--CCeEEecchhcCCcccCCCCEEE
Confidence 567999999999998753 333 34 4999999999876 677777777776 489999999998764 6899999
Q ss_pred eccc-cccC-C-CC----CcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELL-GSFG-D-NE----LSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEll-gsfg-~-~E----l~pe~L~~~~r~LkpgGi~I 450 (626)
+++. |-.. . .+ ....++..+.+.|||||.++
T Consensus 254 ~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv 291 (329)
T TIGR01177 254 TDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIV 291 (329)
T ss_pred ECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEE
Confidence 9874 2111 1 11 12567888899999999765
|
This family is found exclusively in the Archaea. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-07 Score=97.63 Aligned_cols=98 Identities=21% Similarity=0.216 Sum_probs=74.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEecc
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSEL 422 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEl 422 (626)
..|||+|||.|+|+.. +++... ..+|+-+|.|..|+ .++++++.|+.. +..++.+|.-+--. ++||.|||++
T Consensus 160 ~~vlDlGCG~Gvlg~~---la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~--~~~v~~s~~~~~v~-~kfd~IisNP 232 (300)
T COG2813 160 GKVLDLGCGYGVLGLV---LAKKSP-QAKLTLVDVNARAVESARKNLAANGVE--NTEVWASNLYEPVE-GKFDLIISNP 232 (300)
T ss_pred CcEEEeCCCccHHHHH---HHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCC--ccEEEEeccccccc-ccccEEEeCC
Confidence 3899999999999954 444333 36999999999998 788888889886 34677777655333 4999999999
Q ss_pred ccccCCCCCcH----HHHHHHHHhcccCcEE
Q psy17734 423 LGSFGDNELSP----ECLYAAQKYLKEDGIS 449 (626)
Q Consensus 423 lgsfg~~El~p----e~L~~~~r~LkpgGi~ 449 (626)
.-+-|-. ... +++.++.++|++||.+
T Consensus 233 Pfh~G~~-v~~~~~~~~i~~A~~~L~~gGeL 262 (300)
T COG2813 233 PFHAGKA-VVHSLAQEIIAAAARHLKPGGEL 262 (300)
T ss_pred CccCCcc-hhHHHHHHHHHHHHHhhccCCEE
Confidence 7543322 234 7889999999999974
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.1e-07 Score=80.59 Aligned_cols=101 Identities=21% Similarity=0.222 Sum_probs=72.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC--CCCccEEEecc
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA--PEKADIMVSEL 422 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~--p~k~DiIVSEl 422 (626)
+|+|+|||.|.++..++. ..+ .+++++|.++.+....+.........+ ++++.+|..+... +.++|++++..
T Consensus 1 ~ildig~G~G~~~~~~~~---~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALAS---GPG--ARVTGVDISPVALELARKAAAALLADN-VEVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhc---CCC--CEEEEEeCCHHHHHHHHHHHhcccccc-eEEEEcChhhhccccCCceEEEEEcc
Confidence 379999999999864433 122 599999999988754442333333344 9999999998863 57899999865
Q ss_pred ccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 423 LGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 423 lgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.... .+....++..+.+.|+|+|.++..
T Consensus 75 ~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 43221 333466788888999999998865
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-07 Score=104.24 Aligned_cols=103 Identities=20% Similarity=0.174 Sum_probs=76.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiI 418 (626)
++.+|||+|||+|..+..++... +.+.+|+|+|.++.++ .++++.++++.. +|+++++|++++. .+++||+|
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~---~~~~~v~avDi~~~~l~~~~~n~~~~g~~--~v~~~~~D~~~~~~~~~~~fD~V 324 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELL---KNTGKVVALDIHEHKLKLIEENAKRLGLT--NIETKALDARKVHEKFAEKFDKI 324 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHh---CCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeCCcccccchhcccCCEE
Confidence 56789999999999996544432 2225999999999877 677777778875 5999999998864 34689999
Q ss_pred EeccccccCCCC---------------------CcHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELLGSFGDNE---------------------LSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEllgsfg~~E---------------------l~pe~L~~~~r~LkpgGi~I 450 (626)
+++..-+ +.+. ...++|..+.++|||||.++
T Consensus 325 l~D~Pcs-g~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv 376 (444)
T PRK14902 325 LVDAPCS-GLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILV 376 (444)
T ss_pred EEcCCCC-CCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 9986422 1110 01246788889999999998
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-07 Score=100.79 Aligned_cols=109 Identities=15% Similarity=0.223 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHH-----HHHcCCCCCcEEEEEecccccC--CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKY-----KKEEQWAQSDVTIVSEDMRTWN--APE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~-----~~~n~~~~~nV~vi~~D~~~~~--~p~ 413 (626)
...+||++|||+|.....+++ ..+. .+|++||.++.++ ++++. ..+..+.+.+|+++.+|.+++- ..+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk---~~~v-~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLK---YETV-LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHh---cCCC-CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 346899999999997754443 2222 4999999999877 55531 1223343335999999999863 346
Q ss_pred CccEEEeccccccC--CCCC-cHHHHHHHHHhcccCcEEEeccc
Q psy17734 414 KADIMVSELLGSFG--DNEL-SPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 414 k~DiIVSEllgsfg--~~El-~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+||+|++++....+ ...+ ..+++..+.+.|+|||+++-+..
T Consensus 226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 89999998754322 1222 36788899999999999887643
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-07 Score=99.14 Aligned_cols=99 Identities=24% Similarity=0.254 Sum_probs=71.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEeccc
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELL 423 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEll 423 (626)
+|||+|||+|.++..++... ...+|+|+|.|+.|+ .|+++...++. .+ +.++.+|..+-- .++||+|||++.
T Consensus 113 ~ilDlGTGSG~iai~la~~~----~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~-~~~~~~dlf~~~-~~~fDlIVsNPP 185 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG----PDAEVIAVDISPDALALARENAERNGL-VR-VLVVQSDLFEPL-RGKFDLIVSNPP 185 (280)
T ss_pred cEEEecCChHHHHHHHHhhC----cCCeEEEEECCHHHHHHHHHHHHHcCC-cc-EEEEeeeccccc-CCceeEEEeCCC
Confidence 79999999999996443332 235999999999998 88999999998 54 888887654422 248999999874
Q ss_pred cccCCCC---Cc----------------------HHHHHHHHHhcccCcEEEec
Q psy17734 424 GSFGDNE---LS----------------------PECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 424 gsfg~~E---l~----------------------pe~L~~~~r~LkpgGi~IP~ 452 (626)
+...+ .+ ..+++.+.++|+|||.++-.
T Consensus 186 --Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 186 --YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred --CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 11111 11 23455667889998887644
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.2e-08 Score=107.44 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccc--cCCC-CCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT--WNAP-EKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~--~~~p-~k~DiI 418 (626)
++.+|||+|||+|.++..++.. + .+|+|||.++.++...+. .++... +++++++|+.+ ++.+ ++||+|
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~----~--~~v~giD~s~~~l~~a~~--~~~~~~-~i~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK----A--GQVIALDFIESVIKKNES--INGHYK-NVKFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh----C--CEEEEEeCCHHHHHHHHH--HhccCC-ceEEEEecccccccCCCCCCEEEE
Confidence 4568999999999998654332 2 399999999987733222 233333 49999999974 3333 689999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
++...-++...+...+++..+.+.|||||+++...
T Consensus 108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 99875555444445678899999999999987653
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.9e-08 Score=92.58 Aligned_cols=90 Identities=24% Similarity=0.276 Sum_probs=65.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEE
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIM 418 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiI 418 (626)
+.++++|+|+|||||.|+..++ ..|+ .+|+|||.++.+. +++++..+ +.+. |.++.+|++++. .++|.+
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~----~lGa-~~V~~vdiD~~a~ei~r~N~~~--l~g~-v~f~~~dv~~~~--~~~dtv 112 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAA----LLGA-SRVLAVDIDPEALEIARANAEE--LLGD-VEFVVADVSDFR--GKFDTV 112 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHH----hcCC-cEEEEEecCHHHHHHHHHHHHh--hCCc-eEEEEcchhhcC--CccceE
Confidence 3477899999999999995433 3454 5999999999988 66666655 4455 999999999987 578999
Q ss_pred Eeccc-cccCCCCCc-HHHHHHHHH
Q psy17734 419 VSELL-GSFGDNELS-PECLYAAQK 441 (626)
Q Consensus 419 VSEll-gsfg~~El~-pe~L~~~~r 441 (626)
|.++. |+. .+.. -++|+.+-+
T Consensus 113 imNPPFG~~--~rhaDr~Fl~~Ale 135 (198)
T COG2263 113 IMNPPFGSQ--RRHADRPFLLKALE 135 (198)
T ss_pred EECCCCccc--cccCCHHHHHHHHH
Confidence 99874 443 2233 345555433
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-07 Score=99.47 Aligned_cols=105 Identities=19% Similarity=0.167 Sum_probs=75.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEE-e
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMV-S 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIV-S 420 (626)
+..+|||||||+|.++..+++.. .+.+++++|..+....+++++...+..++ |+++.+|+.+...+. +|+++ +
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~----p~~~~~~~D~~~~~~~a~~~~~~~gl~~r-v~~~~~d~~~~~~~~-~D~v~~~ 222 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHF----PELDSTILNLPGAIDLVNENAAEKGVADR-MRGIAVDIYKESYPE-ADAVLFC 222 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHC----CCCEEEEEecHHHHHHHHHHHHhCCccce-EEEEecCccCCCCCC-CCEEEeE
Confidence 45799999999999986444332 22589999974333477777777888887 999999998765544 79875 4
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
..+..+. .+....++..+.+.|||||.++-..
T Consensus 223 ~~lh~~~-~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 223 RILYSAN-EQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred hhhhcCC-hHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4333221 1223567889999999999987554
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.1e-07 Score=96.28 Aligned_cols=103 Identities=20% Similarity=0.203 Sum_probs=70.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++... . ..+|+|+|.++.++ .+.++.. +..... ++++.+|+.+...+++||+||+
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~---~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~-i~~~~~d~~~~~~~~~fD~Iv~ 181 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKER---P-DAEVTAVDISPEALAVARRNAK-HGLGAR-VEFLQGDWFEPLPGGRFDLIVS 181 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHC---C-CCEEEEEECCHHHHHHHHHHHH-hCCCCc-EEEEEccccCcCCCCceeEEEE
Confidence 45689999999999986544332 1 25999999999887 5555554 344444 9999999866433478999999
Q ss_pred ccccccCC------------CC----------C---cHHHHHHHHHhcccCcEEEe
Q psy17734 421 ELLGSFGD------------NE----------L---SPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ellgsfg~------------~E----------l---~pe~L~~~~r~LkpgGi~IP 451 (626)
++.- ... +| + ...++..+.++|||||.++-
T Consensus 182 npPy-~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 182 NPPY-IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred CCCc-CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 7541 110 00 1 12355666789999998774
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-07 Score=97.09 Aligned_cols=105 Identities=19% Similarity=0.112 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIV 419 (626)
++.+|||+|||+|..+..++.. .+.+.+|+|+|.++.+. .+++++++++.. ||+++++|++++.. .++||.|+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~---~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~--~v~~~~~D~~~~~~~~~~fD~Vl 145 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISAL---MKNEGAIVANEFSKSRTKVLIANINRCGVL--NVAVTNFDGRVFGAAVPKFDAIL 145 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHH---cCCCCEEEEEcCCHHHHHHHHHHHHHcCCC--cEEEecCCHHHhhhhccCCCEEE
Confidence 5679999999999999654333 22224999999999776 677777778774 59999999987653 25799999
Q ss_pred eccccccC----CC-C---------------CcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFG----DN-E---------------LSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg----~~-E---------------l~pe~L~~~~r~LkpgGi~IP 451 (626)
.+..-+.. .+ + ...++|..+.++|||||+++=
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvY 197 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVY 197 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 88653211 01 0 012467788889999999983
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.3e-07 Score=102.78 Aligned_cols=109 Identities=17% Similarity=0.070 Sum_probs=79.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-----CCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-----APEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-----~p~k~ 415 (626)
++.+|||+|||+|..+..++... +.+.+|+|+|.++.+. .++++++++|+. ||+++++|++++. ..++|
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~---~~~g~v~a~D~~~~rl~~~~~n~~r~g~~--~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELM---GDQGEIWAVDRSASRLKKLQENAQRLGLK--SIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCC--eEEEEeCChhhcccccccccccC
Confidence 56799999999999986544433 2225999999999776 677777788875 5999999999875 13689
Q ss_pred cEEEecccccc----CCCCC----------------cHHHHHHHHHhcccCcEEEeccce
Q psy17734 416 DIMVSELLGSF----GDNEL----------------SPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 416 DiIVSEllgsf----g~~El----------------~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
|.|+.+..-|. .-+.. ..++|+.+.++|||||+++=..++
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 99998765321 11110 135788889999999999854444
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.1e-07 Score=95.50 Aligned_cols=108 Identities=18% Similarity=0.290 Sum_probs=76.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc--CCCCCcEEEEEecccccC--CCCCccE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE--QWAQSDVTIVSEDMRTWN--APEKADI 417 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n--~~~~~nV~vi~~D~~~~~--~p~k~Di 417 (626)
..+||++|||+|.++..+++ .... .+|++||.++.++ .+++..... .+.+.+++++.+|.+++- .++++|+
T Consensus 73 p~~VL~iG~G~G~~~~~ll~---~~~~-~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLK---HKSV-EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCEEEEEcCCchHHHHHHHh---CCCc-ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 35899999999998865443 2222 4899999999876 555543221 233334999999987742 2478999
Q ss_pred EEeccccccCCCCC--cHHHHHHHHHhcccCcEEEeccc
Q psy17734 418 MVSELLGSFGDNEL--SPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 418 IVSEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
||++.....+..+. ..++++.+.+.|+|||+++-+..
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 99987543333333 46888999999999999997744
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.3e-07 Score=99.94 Aligned_cols=100 Identities=17% Similarity=0.112 Sum_probs=70.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--CCCccEEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--PEKADIMV 419 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--p~k~DiIV 419 (626)
+.+|||+|||+|.++..++... .+ .+|+|+|.|+.|+ .++++.+.++. + |+++++|+.+... .++||+||
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~--p~--a~VtAVDiS~~ALe~AreNa~~~g~--r-V~fi~gDl~e~~l~~~~~FDLIV 324 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALER--PD--AFVRASDISPPALETARKNAADLGA--R-VEFAHGSWFDTDMPSEGKWDIIV 324 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhC--CC--CEEEEEECCHHHHHHHHHHHHHcCC--c-EEEEEcchhccccccCCCccEEE
Confidence 3589999999999986433221 12 5999999999887 77777766653 4 9999999976432 35799999
Q ss_pred eccccccCCC---------------------CCc---HHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDN---------------------ELS---PECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~---------------------El~---pe~L~~~~r~LkpgGi~I 450 (626)
|++. ++... ++. ..++..+.++|+|||.++
T Consensus 325 SNPP-YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li 378 (423)
T PRK14966 325 SNPP-YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL 378 (423)
T ss_pred ECCC-CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE
Confidence 9885 21111 111 234555667899999865
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.8e-07 Score=96.11 Aligned_cols=101 Identities=20% Similarity=0.221 Sum_probs=67.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC----CCCCcc
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN----APEKAD 416 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~----~p~k~D 416 (626)
.++.+|||+|||+|.++..++ ...+.+.+|||||.++.+...+..+.... . ||..+.+|++.-. ..+.+|
T Consensus 131 kpG~~VLDLGaG~G~~t~~lA---diVG~~G~VyAVD~s~r~~~dLl~~ak~r-~--NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVS---DLVGPEGVVYAVEFSHRSGRDLTNMAKKR-P--NIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHH---HHhCCCCEEEEEECcHHHHHHHHHHhhhc-C--CCEEEECCccChhhhhcccCCCC
Confidence 367899999999999996544 43443359999999986542222221111 1 6999999987532 236799
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+|++... .......++..+.++|||||.++-
T Consensus 205 vV~~Dva----~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 205 VIFADVA----QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred EEEEeCC----CcchHHHHHHHHHHhccCCCEEEE
Confidence 9999763 111122355678899999998775
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.9e-07 Score=96.23 Aligned_cols=105 Identities=14% Similarity=0.117 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccc-cCCCCCc---c
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRT-WNAPEKA---D 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~-~~~p~k~---D 416 (626)
++.+|||+|||+|..+..++++..+ + .+|+|||.|+.++ .+.+.+....-.. +|..+++|+++ ...+.++ +
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~-~--~~~~~iDiS~~mL~~a~~~l~~~~p~~-~v~~i~gD~~~~~~~~~~~~~~~ 138 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQ-P--ARYVPIDISADALKESAAALAADYPQL-EVHGICADFTQPLALPPEPAAGR 138 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhcc-C--CeEEEEECCHHHHHHHHHHHHhhCCCc-eEEEEEEcccchhhhhcccccCC
Confidence 3468999999999999877766532 2 5999999999876 5555544322122 38889999987 3444443 3
Q ss_pred EEEeccccccCCC-C--CcHHHHHHHHHhcccCcEEEe
Q psy17734 417 IMVSELLGSFGDN-E--LSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 417 iIVSEllgsfg~~-E--l~pe~L~~~~r~LkpgGi~IP 451 (626)
.++. ++|+...+ + ....+|..+.+.|+|||.++-
T Consensus 139 ~~~~-~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 139 RLGF-FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred eEEE-EecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3332 23332222 1 134578889999999999874
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.2e-07 Score=95.71 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=69.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---CCCccEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA---PEKADIM 418 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~---p~k~DiI 418 (626)
..+|||+|||+|.++..++... .+ .+|+|+|.|+.|+ .++++.+.++ ++++++|+.+... .++||+|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~--~~--~~v~~vDis~~al~~A~~N~~~~~-----~~~~~~D~~~~l~~~~~~~fDlV 157 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL--DG--IELHAADIDPAAVRCARRNLADAG-----GTVHEGDLYDALPTALRGRVDIL 157 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC--CC--CEEEEEECCHHHHHHHHHHHHHcC-----CEEEEeechhhcchhcCCCEeEE
Confidence 3589999999999996543322 12 4899999999887 6666665543 5789999876431 3579999
Q ss_pred Eecccccc---------------------CCCCC---cHHHHHHHHHhcccCcEEEec
Q psy17734 419 VSELLGSF---------------------GDNEL---SPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 419 VSEllgsf---------------------g~~El---~pe~L~~~~r~LkpgGi~IP~ 452 (626)
|+++.-.- +..++ ...++..+.++|||||.++-.
T Consensus 158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99875210 00011 135666778899999998743
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.8e-07 Score=94.32 Aligned_cols=69 Identities=20% Similarity=0.319 Sum_probs=52.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEecc
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSEL 422 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEl 422 (626)
.+|||+|||+|.++..++ ++.+. .+|++||.|+.+. .++++ +. +++++++|++++....+||+||+++
T Consensus 66 grVLDLGcGsGilsl~la---~r~~~-~~V~gVDisp~al~~Ar~n-----~~--~v~~v~~D~~e~~~~~kFDlIIsNP 134 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCML---HRCKP-EKIVCVELNPEFARIGKRL-----LP--EAEWITSDVFEFESNEKFDVVISNP 134 (279)
T ss_pred CeEEEcCCCCCHHHHHHH---HhCCC-CEEEEEECCHHHHHHHHHh-----Cc--CCEEEECchhhhcccCCCcEEEEcC
Confidence 579999999999985433 32211 4999999999877 43332 22 3999999999987667899999987
Q ss_pred c
Q psy17734 423 L 423 (626)
Q Consensus 423 l 423 (626)
.
T Consensus 135 P 135 (279)
T PHA03411 135 P 135 (279)
T ss_pred C
Confidence 4
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.9e-07 Score=89.89 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=71.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..+++.. +...+++++|.++.+. .+.+... +..+ ++++.+|+.+...+ +++|+|+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~---~~~~~~~~iD~~~~~~~~~~~~~~---~~~~-i~~~~~d~~~~~~~~~~~D~i~ 111 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA---PDRGKVTGVDFSSEMLEVAKKKSE---LPLN-IEFIQADAEALPFEDNSFDAVT 111 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc---CCCceEEEEECCHHHHHHHHHHhc---cCCC-ceEEecchhcCCCCCCcEEEEE
Confidence 56799999999999986544332 2114899999999776 4443332 4444 99999999987653 6899998
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+... +........+++.+.+.|+|||.++-
T Consensus 112 ~~~~--~~~~~~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 112 IAFG--LRNVTDIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred Eeee--eCCcccHHHHHHHHHHHcCCCcEEEE
Confidence 7432 11112246788999999999999874
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=4e-07 Score=96.92 Aligned_cols=96 Identities=19% Similarity=0.115 Sum_probs=69.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIV 419 (626)
++.+|||+|||+|.++..+++ ..+.+.+|++||.++.+. .++++++.++.. ||+++.+|..+... ..+||+|+
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~---~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~--nV~~i~gD~~~~~~~~~~fD~Ii 154 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSR---VVGEKGLVVSVEYSRKICEIAKRNVRRLGIE--NVIFVCGDGYYGVPEFAPYDVIF 154 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHH---hcCCCCEEEEEECCHHHHHHHHHHHHHcCCC--cEEEEeCChhhcccccCCccEEE
Confidence 457999999999999864433 333224799999999776 677777777764 59999999876533 25799999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+. ++ .++..+...+.|+|||.++
T Consensus 155 ~~----~g----~~~ip~~~~~~LkpgG~Lv 177 (322)
T PRK13943 155 VT----VG----VDEVPETWFTQLKEGGRVI 177 (322)
T ss_pred EC----Cc----hHHhHHHHHHhcCCCCEEE
Confidence 73 21 2334455667899999754
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.2e-07 Score=99.45 Aligned_cols=97 Identities=18% Similarity=0.193 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..++ +..+. .+|+++|.++.+. .++++.. . . +++++.+|++++..+ +.||+|+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La---~~~~~-~~VtgVD~S~~mL~~A~~k~~---~-~-~i~~i~gD~e~lp~~~~sFDvVI 183 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIV---KHVDA-KNVTILDQSPHQLAKAKQKEP---L-K-ECKIIEGDAEDLPFPTDYADRYV 183 (340)
T ss_pred CCCEEEEEecCCcHHHHHHH---HHCCC-CEEEEEECCHHHHHHHHHhhh---c-c-CCeEEeccHHhCCCCCCceeEEE
Confidence 45789999999999885433 22222 4999999999876 4444321 1 2 499999999998764 6899999
Q ss_pred ecc-ccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SEL-LGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEl-lgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+.. +.++ ......++.+.+.|||||.++
T Consensus 184 s~~~L~~~---~d~~~~L~e~~rvLkPGG~Lv 212 (340)
T PLN02490 184 SAGSIEYW---PDPQRGIKEAYRVLKIGGKAC 212 (340)
T ss_pred EcChhhhC---CCHHHHHHHHHHhcCCCcEEE
Confidence 843 2222 123468899999999999975
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.5e-07 Score=88.57 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-CCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-NAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..+ +..+ .+|+++|.++.+... . ++.....+..+. ..+++||+|++
T Consensus 22 ~~~~vLDiGcG~G~~~~~l----~~~~--~~~~g~D~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~fD~i~~ 84 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRAL----AKRG--FEVTGVDISPQMIEK----------R-NVVFDNFDAQDPPFPDGSFDLIIC 84 (161)
T ss_dssp TTSEEEEESSTTSHHHHHH----HHTT--SEEEEEESSHHHHHH----------T-TSEEEEEECHTHHCHSSSEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHH----HHhC--CEEEEEECCHHHHhh----------h-hhhhhhhhhhhhhccccchhhHhh
Confidence 5689999999999987543 2234 499999999977643 1 233333333333 34589999998
Q ss_pred cc-ccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 EL-LGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 El-lgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.- +.++. ...++|..+.+.|||||.++-.
T Consensus 85 ~~~l~~~~---d~~~~l~~l~~~LkpgG~l~~~ 114 (161)
T PF13489_consen 85 NDVLEHLP---DPEEFLKELSRLLKPGGYLVIS 114 (161)
T ss_dssp ESSGGGSS---HHHHHHHHHHHCEEEEEEEEEE
T ss_pred HHHHhhcc---cHHHHHHHHHHhcCCCCEEEEE
Confidence 43 33332 2467899999999999987744
|
... |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.3e-07 Score=103.80 Aligned_cols=110 Identities=21% Similarity=0.295 Sum_probs=77.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHH--H---HHcCCCCCcEEEEEecccccC--CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKY--K---KEEQWAQSDVTIVSEDMRTWN--APE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~--~---~~n~~~~~nV~vi~~D~~~~~--~p~ 413 (626)
+.++|||+|||+|.++..++ ++.+. .+|++||.++.++ .++++ . +.+.+++.+|+++.+|.+++- .++
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll---~~~~v-~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~ 372 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVL---KYPDV-EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAE 372 (521)
T ss_pred CCCeEEEEcCCccHHHHHHH---hCCCc-CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCC
Confidence 35689999999999986544 32221 4999999999877 55542 1 122344434999999999853 357
Q ss_pred CccEEEeccccccCC--CCC-cHHHHHHHHHhcccCcEEEeccce
Q psy17734 414 KADIMVSELLGSFGD--NEL-SPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 414 k~DiIVSEllgsfg~--~El-~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
+||+|++++...... ..+ ..|+++.+.+.|||||+++-+...
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 999999987543221 122 367888899999999999977643
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.4e-07 Score=92.03 Aligned_cols=99 Identities=20% Similarity=0.176 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHH-HHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMS-AVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMV 419 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~-a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIV 419 (626)
.++.+|+|.|+|+|.|+..++++-. ...+|+.+|..+. +..|+++++..+++++ |++..+|.++...++.||.|+
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg---~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~-v~~~~~Dv~~~~~~~~vDav~ 168 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVG---PEGHVTTYEIREDFAKTARENLSEFGLGDR-VTLKLGDVREGIDEEDVDAVF 168 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhC---CCceEEEEEecHHHHHHHHHHHHHhccccc-eEEEeccccccccccccCEEE
Confidence 4789999999999999987666554 3359999999874 5699999988899987 999999999988888999998
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
-++.. -.+.++.+.+.|||||.++
T Consensus 169 LDmp~-------PW~~le~~~~~Lkpgg~~~ 192 (256)
T COG2519 169 LDLPD-------PWNVLEHVSDALKPGGVVV 192 (256)
T ss_pred EcCCC-------hHHHHHHHHHHhCCCcEEE
Confidence 86642 3468999999999999876
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.3e-07 Score=111.36 Aligned_cols=112 Identities=17% Similarity=0.067 Sum_probs=78.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCC---------------CCcEEEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWA---------------QSDVTIVSED 405 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~---------------~~nV~vi~~D 405 (626)
++.+|||+|||+|.++..++. +.. ..+|+|+|+|+.|+ .+.++++.|+.+ ++ |+++++|
T Consensus 118 ~~~~VLDlG~GSG~Iai~La~---~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~r-V~f~~sD 192 (1082)
T PLN02672 118 RDKTVAELGCGNGWISIAIAE---KWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDR-VEFYESD 192 (1082)
T ss_pred CCCEEEEEecchHHHHHHHHH---HCC-CCEEEEEECCHHHHHHHHHHHHHcCccccccccccccccccccc-EEEEECc
Confidence 456899999999999964333 222 24999999999988 888888776532 45 9999999
Q ss_pred ccccCCC--CCccEEEeccccccCC----------------------------------CCCc---HHHHHHHHHhcccC
Q psy17734 406 MRTWNAP--EKADIMVSELLGSFGD----------------------------------NELS---PECLYAAQKYLKED 446 (626)
Q Consensus 406 ~~~~~~p--~k~DiIVSEllgsfg~----------------------------------~El~---pe~L~~~~r~Lkpg 446 (626)
+.+.-.. .++|+|||++. +... ..++ ..++..+.++||||
T Consensus 193 l~~~~~~~~~~fDlIVSNPP-YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pg 271 (1082)
T PLN02672 193 LLGYCRDNNIELDRIVGCIP-QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPM 271 (1082)
T ss_pred hhhhccccCCceEEEEECCC-cCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCC
Confidence 9875422 37999999875 1111 1111 23455667899999
Q ss_pred cEEEeccceeeEE
Q psy17734 447 GISIPYNYTSYIA 459 (626)
Q Consensus 447 Gi~IP~~~t~y~a 459 (626)
|.++-.-+.-...
T Consensus 272 G~l~lEiG~~q~~ 284 (1082)
T PLN02672 272 GIMIFNMGGRPGQ 284 (1082)
T ss_pred CEEEEEECccHHH
Confidence 9988765544443
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.4e-07 Score=100.46 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=79.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiI 418 (626)
++.+|||+|||+|..+..++.. .+...+|+|+|.++.++ .++++.++.+.. +|+++.+|++++. .+++||.|
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~---~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~--~v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAEL---MKDQGKILAVDISREKIQLVEKHAKRLKLS--SIEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHH---cCCCCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEECchhhhhhhhhccCCEE
Confidence 5679999999999998654433 22225999999999776 777777777775 5999999999875 34789999
Q ss_pred Eeccccc-cCCCCCc-------------------HHHHHHHHHhcccCcEEEeccce
Q psy17734 419 VSELLGS-FGDNELS-------------------PECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 419 VSEllgs-fg~~El~-------------------pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
+.+..-+ +|.-... .++|..+.++|||||+++-+.+|
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 9876432 2221111 23577788999999999866665
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-06 Score=89.09 Aligned_cols=87 Identities=11% Similarity=0.059 Sum_probs=62.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSE 421 (626)
+.+|||+|||||.++..+.+. .+ .+|+|+|.|+.++...+.. .+.+++|+++++.+ ++||+|++.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~---~~--~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~ 117 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKV---FK--YYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSS 117 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHh---cC--CEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEec
Confidence 568999999999988643332 23 4999999999887332211 23468899988764 689999994
Q ss_pred cccccCCC--CCcHHHHHHHHHhcccCc
Q psy17734 422 LLGSFGDN--ELSPECLYAAQKYLKEDG 447 (626)
Q Consensus 422 llgsfg~~--El~pe~L~~~~r~LkpgG 447 (626)
. +.+ +..+..+..+.|.|||.+
T Consensus 118 ~----~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 118 F----ALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred C----hhhccCCHHHHHHHHHHHhcCce
Confidence 3 222 224678999999999954
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.9e-07 Score=88.24 Aligned_cols=94 Identities=19% Similarity=0.266 Sum_probs=69.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccc-cCCCCCccEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRT-WNAPEKADIM 418 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~-~~~p~k~DiI 418 (626)
.++.+||+||||+|-.+-. .++..+ +|++||..+... .|+++++..|.. ||+++++|... |+...+||.|
T Consensus 71 ~~g~~VLEIGtGsGY~aAv---la~l~~---~V~siEr~~~L~~~A~~~L~~lg~~--nV~v~~gDG~~G~~~~aPyD~I 142 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAV---LARLVG---RVVSIERIEELAEQARRNLETLGYE--NVTVRHGDGSKGWPEEAPYDRI 142 (209)
T ss_pred CCCCeEEEECCCchHHHHH---HHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCC--ceEEEECCcccCCCCCCCcCEE
Confidence 3678999999999999843 333333 999999998655 888888888886 69999999877 4444799999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+.. .+..+ .|+. ..+.||+||+++
T Consensus 143 ~Vt----aaa~~-vP~~---Ll~QL~~gGrlv 166 (209)
T COG2518 143 IVT----AAAPE-VPEA---LLDQLKPGGRLV 166 (209)
T ss_pred EEe----eccCC-CCHH---HHHhcccCCEEE
Confidence 873 22222 3433 345699999976
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.4e-07 Score=100.40 Aligned_cols=105 Identities=17% Similarity=0.113 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---CCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA---PEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~---p~k~Di 417 (626)
++.+|||+|||+|..+..++..+ +. .+|+|+|.++.+. .++++...++. +++++++|++++.. +++||.
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~---~~-~~v~a~D~s~~~l~~~~~n~~~~g~---~~~~~~~D~~~~~~~~~~~~fD~ 316 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELA---PQ-AQVVALDIDAQRLERVRENLQRLGL---KATVIVGDARDPAQWWDGQPFDR 316 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHc---CC-CEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEcCcccchhhcccCCCCE
Confidence 56799999999999996544433 21 4999999999876 66667666766 38899999987642 367999
Q ss_pred EEeccccc-cCC---C-CC---------------cHHHHHHHHHhcccCcEEEecc
Q psy17734 418 MVSELLGS-FGD---N-EL---------------SPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 418 IVSEllgs-fg~---~-El---------------~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
|+++..-+ .|. + +. ...+|+.+.+.|||||.++-..
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 99877422 110 0 00 1246778889999999998443
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.3e-07 Score=92.86 Aligned_cols=96 Identities=17% Similarity=0.106 Sum_probs=66.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc-CCCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW-NAPEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~-~~p~k~DiIV 419 (626)
++.+|||||||+|-++..+.... |...+|++||.++... .+++++...+.. ||+++.+|...- +...+||.|+
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lv---g~~g~Vv~vE~~~~l~~~A~~~l~~~~~~--nv~~~~gdg~~g~~~~apfD~I~ 146 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLV---GPVGRVVSVERDPELAERARRNLARLGID--NVEVVVGDGSEGWPEEAPFDRII 146 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH---STTEEEEEEESBHHHHHHHHHHHHHHTTH--SEEEEES-GGGTTGGG-SEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHhc---CccceEEEECccHHHHHHHHHHHHHhccC--ceeEEEcchhhccccCCCcCEEE
Confidence 67899999999999985444333 4335899999999765 788888877776 699999998763 3336899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+. .+.. ..| ....+.||+||++|
T Consensus 147 v~----~a~~-~ip---~~l~~qL~~gGrLV 169 (209)
T PF01135_consen 147 VT----AAVP-EIP---EALLEQLKPGGRLV 169 (209)
T ss_dssp ES----SBBS-S-----HHHHHTEEEEEEEE
T ss_pred Ee----eccc-hHH---HHHHHhcCCCcEEE
Confidence 83 2222 233 33456699999977
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >KOG2904|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.3e-07 Score=91.72 Aligned_cols=123 Identities=20% Similarity=0.214 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCc
Q psy17734 320 IRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSD 398 (626)
Q Consensus 320 ~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~n 398 (626)
+.+-+++..++... .-.++..+||+|||+|.++...+.- .+ +.+|+|||+++.|+ +|.++.+++++.++
T Consensus 131 EE~V~~Vid~~~~~-----~~~~~~~ildlgtGSGaIslsll~~---L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~- 200 (328)
T KOG2904|consen 131 EEWVEAVIDALNNS-----EHSKHTHILDLGTGSGAISLSLLHG---LP-QCTVTAIDVSKAAIKLAKENAQRLKLSGR- 200 (328)
T ss_pred HHHHHHHHHHHhhh-----hhcccceEEEecCCccHHHHHHHhc---CC-CceEEEEeccHHHHHHHHHHHHHHhhcCc-
Confidence 44555555555431 1124558999999999999654332 33 37999999999988 88899999999999
Q ss_pred EEEEEeccccc---CC---CCCccEEEecccccc---------------------CCCCCc---HHHHHHHHHhcccCcE
Q psy17734 399 VTIVSEDMRTW---NA---PEKADIMVSELLGSF---------------------GDNELS---PECLYAAQKYLKEDGI 448 (626)
Q Consensus 399 V~vi~~D~~~~---~~---p~k~DiIVSEllgsf---------------------g~~El~---pe~L~~~~r~LkpgGi 448 (626)
+.+++-+|+.- +. ..+.|++||++.--+ |..|+. -.+++.+.|.|+|||.
T Consensus 201 i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~ 280 (328)
T KOG2904|consen 201 IEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGF 280 (328)
T ss_pred eEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCe
Confidence 99998888652 22 278999999875211 112222 1234566789999987
Q ss_pred EEec
Q psy17734 449 SIPY 452 (626)
Q Consensus 449 ~IP~ 452 (626)
+.-.
T Consensus 281 ~~le 284 (328)
T KOG2904|consen 281 EQLE 284 (328)
T ss_pred EEEE
Confidence 6543
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.3e-07 Score=91.00 Aligned_cols=120 Identities=24% Similarity=0.191 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCc
Q psy17734 320 IRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSD 398 (626)
Q Consensus 320 ~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~n 398 (626)
+.-++|+...+... ..++.+|||+-||||.++. +|..+. + .+|+.||+|+.+. ..+++++.-+..++
T Consensus 26 drvrealFniL~~~------~~~g~~vLDLFaGSGalGl---EALSRG-A-~~v~fVE~~~~a~~~i~~N~~~l~~~~~- 93 (183)
T PF03602_consen 26 DRVREALFNILQPR------NLEGARVLDLFAGSGALGL---EALSRG-A-KSVVFVEKNRKAIKIIKKNLEKLGLEDK- 93 (183)
T ss_dssp HHHHHHHHHHHHCH-------HTT-EEEETT-TTSHHHH---HHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGG-
T ss_pred HHHHHHHHHHhccc------ccCCCeEEEcCCccCccHH---HHHhcC-C-CeEEEEECCHHHHHHHHHHHHHhCCCcc-
Confidence 34467777777653 0257899999999999995 455543 3 4999999999887 66777777777776
Q ss_pred EEEEEecccccC-----CCCCccEEEeccccccCCCCCcHHHHHHHH--HhcccCcEEEecc
Q psy17734 399 VTIVSEDMRTWN-----APEKADIMVSELLGSFGDNELSPECLYAAQ--KYLKEDGISIPYN 453 (626)
Q Consensus 399 V~vi~~D~~~~~-----~p~k~DiIVSEllgsfg~~El~pe~L~~~~--r~LkpgGi~IP~~ 453 (626)
++++.+|....- ..++||+|+.++.-.. ....+++++.+. .+|+++|++|-..
T Consensus 94 ~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~--~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 94 IRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAK--GLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp EEEEESSHHHHHHHHHHCTS-EEEEEE--STTS--CHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred eeeeccCHHHHHHhhcccCCCceEEEECCCccc--chHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 999999965431 2479999999886322 111367777765 6899999988554
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.3e-07 Score=91.27 Aligned_cols=101 Identities=16% Similarity=0.046 Sum_probs=67.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCC--------------CCCcEEEEEeccc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQW--------------AQSDVTIVSEDMR 407 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~--------------~~~nV~vi~~D~~ 407 (626)
++.+|||+|||.|.-+.+++. .| .+|+|||.|+.|+..... +++. .. +|+++.+|+.
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~----~G--~~V~gvD~S~~Ai~~~~~--~~~~~~~~~~~~~~~~~~~~-~v~~~~~D~~ 104 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAE----QG--HRVLGVELSEIAVEQFFA--ENGLTPTVTQQGEFTRYRAG-NIEIFCGDFF 104 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHh----CC--CeEEEEeCCHHHHHHHHH--HcCCCcceeccccceeeecC-ceEEEEccCC
Confidence 346899999999999865432 34 599999999988843211 1221 23 4999999999
Q ss_pred ccCC--CCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 408 TWNA--PEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 408 ~~~~--p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
++.. .++||.|+---.-.....+.-+..+..+.+.|||||.++-
T Consensus 105 ~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 105 ALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred CCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 8874 2578988752211111111124467788899999997543
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.6e-07 Score=88.47 Aligned_cols=99 Identities=15% Similarity=0.180 Sum_probs=71.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC--CCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP--EKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p--~k~DiI 418 (626)
.+.+|||+|||+|.++..++ + .+ .+|+++|.++.++ .+.+....++.. . ++++.+|+.++..+ .++|+|
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~---~-~~--~~v~~iD~s~~~~~~a~~~~~~~~~~-~-~~~~~~d~~~~~~~~~~~~D~i 116 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLA---R-LG--ANVTGIDASEENIEVAKLHAKKDPLL-K-IEYRCTSVEDLAEKGAKSFDVV 116 (224)
T ss_pred CCCeEEEECCCCCHHHHHHH---h-cC--CeEEEEeCCHHHHHHHHHHHHHcCCC-c-eEEEeCCHHHhhcCCCCCccEE
Confidence 46789999999999885432 2 23 3799999999776 555554444442 3 99999999887543 689999
Q ss_pred Eecc-ccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 419 VSEL-LGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 419 VSEl-lgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
++.- +.+. +....++..+.+.|+|||.++-
T Consensus 117 ~~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 117 TCMEVLEHV---PDPQAFIRACAQLLKPGGILFF 147 (224)
T ss_pred EehhHHHhC---CCHHHHHHHHHHhcCCCcEEEE
Confidence 8842 2222 2345688999999999998764
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.4e-07 Score=91.06 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=71.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiI 418 (626)
++.+|||+|||+|.++..+ ++ .+ .+|+++|.++.+. .+.+.....+. . ++++.+|+.++. ..++||+|
T Consensus 48 ~~~~vLdiG~G~G~~~~~l---~~-~~--~~v~~iD~s~~~~~~a~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~fD~I 118 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESM---AR-LG--ADVTGIDASEENIEVARLHALESGL--K-IDYRQTTAEELAAEHPGQFDVV 118 (233)
T ss_pred CCCeEEEeCCCCCHHHHHH---HH-cC--CeEEEEcCCHHHHHHHHHHHHHcCC--c-eEEEecCHHHhhhhcCCCccEE
Confidence 5678999999999988543 33 23 4899999999876 55555444444 3 889999988874 34789999
Q ss_pred Eecc-ccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 419 VSEL-LGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 419 VSEl-lgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
++.. +.+. ....+++..+.++|+|||.++-.
T Consensus 119 i~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 119 TCMEMLEHV---PDPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred EEhhHhhcc---CCHHHHHHHHHHHcCCCcEEEEE
Confidence 8843 2222 23467889999999999998744
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.3e-07 Score=96.18 Aligned_cols=104 Identities=16% Similarity=0.182 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC---CCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---APEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---~p~k~Di 417 (626)
.+.++||||||+|.+.. .+|++. ....++|||+++.++ .+++.+..+++. ||.++++|++.+. .++.+|.
T Consensus 122 ~~p~vLEIGcGsG~~ll---~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~--NV~~i~~DA~~ll~~~~~~s~D~ 195 (390)
T PRK14121 122 QEKILIEIGFGSGRHLL---YQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLK--NLLIINYDARLLLELLPSNSVEK 195 (390)
T ss_pred CCCeEEEEcCcccHHHH---HHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCC--cEEEEECCHHHhhhhCCCCceeE
Confidence 34689999999999885 333332 236999999998765 677777778876 7999999998752 2478999
Q ss_pred EEeccccccCCCC----CcHHHHHHHHHhcccCcEEEe
Q psy17734 418 MVSELLGSFGDNE----LSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 418 IVSEllgsfg~~E----l~pe~L~~~~r~LkpgGi~IP 451 (626)
|+......+.-.. ..+.+++.+.|.|+|||.+.-
T Consensus 196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred EEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 9874322221111 126789999999999998653
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.50 E-value=9e-07 Score=85.38 Aligned_cols=96 Identities=20% Similarity=0.253 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCC-CccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPE-KADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~-k~DiIV 419 (626)
++.+|||+|||+|.++..++.. + .+|+|||.++.+. .++++.. + .+ +++++++|+.++..+. ++|.|+
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~----~--~~v~~vE~~~~~~~~~~~~~~--~-~~-~v~ii~~D~~~~~~~~~~~d~vi 82 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER----A--ARVTAIEIDPRLAPRLREKFA--A-AD-NLTVIHGDALKFDLPKLQPYKVV 82 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc----C--CeEEEEECCHHHHHHHHHHhc--c-CC-CEEEEECchhcCCccccCCCEEE
Confidence 4568999999999999754432 2 4999999999877 4444332 2 23 4999999999987664 599999
Q ss_pred eccccccCCCCCcHHHHHHHHH--hcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQK--YLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r--~LkpgGi~IP~ 452 (626)
+++.-+ ...+.+..+.+ .+.++|+++-+
T Consensus 83 ~n~Py~-----~~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 83 GNLPYN-----ISTPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred ECCCcc-----cHHHHHHHHHhcCCCcceEEEEEE
Confidence 987532 12334444332 23466666654
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.1e-07 Score=90.60 Aligned_cols=99 Identities=16% Similarity=0.246 Sum_probs=73.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
....|.|+|||+|..+..+ +.+-.+ ..|+|+|.|+.|+...+.+ +. |+++..+|+++|..+.+.|+++++
T Consensus 30 ~~~~v~DLGCGpGnsTelL--~~RwP~--A~i~GiDsS~~Mla~Aa~r----lp--~~~f~~aDl~~w~p~~~~dllfaN 99 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELL--ARRWPD--AVITGIDSSPAMLAKAAQR----LP--DATFEEADLRTWKPEQPTDLLFAN 99 (257)
T ss_pred ccceeeecCCCCCHHHHHH--HHhCCC--CeEeeccCCHHHHHHHHHh----CC--CCceecccHhhcCCCCccchhhhh
Confidence 4568999999999998633 223223 5999999999887333221 12 599999999999998999999997
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
-.-.++- .-++.|......|.|||.+--|
T Consensus 100 AvlqWlp--dH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 100 AVLQWLP--DHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred hhhhhcc--ccHHHHHHHHHhhCCCceEEEE
Confidence 6544432 2367788888889999987644
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.7e-07 Score=93.06 Aligned_cols=100 Identities=14% Similarity=0.092 Sum_probs=68.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH---HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV---VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~---~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiI 418 (626)
++++|||||||.|-.+.+++.++ + ..|+|+|.++.-. .+.+.. -+.... +..+.--+++++..++||+|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~G----A-~~ViGiDP~~lf~~QF~~i~~~--lg~~~~-~~~lplgvE~Lp~~~~FDtV 186 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRG----A-KSVIGIDPSPLFYLQFEAIKHF--LGQDPP-VFELPLGVEDLPNLGAFDTV 186 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcC----C-CEEEEECCChHHHHHHHHHHHH--hCCCcc-EEEcCcchhhccccCCcCEE
Confidence 67899999999999996544433 3 4999999997543 222222 222223 56665566777656899999
Q ss_pred EeccccccCCCCCcH-HHHHHHHHhcccCcEEEec
Q psy17734 419 VSELLGSFGDNELSP-ECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 419 VSEllgsfg~~El~p-e~L~~~~r~LkpgGi~IP~ 452 (626)
+| ||-+. +...| +.|..+...|+|||.+|-+
T Consensus 187 F~--MGVLY-Hrr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 187 FS--MGVLY-HRRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred EE--eeehh-ccCCHHHHHHHHHHhhCCCCEEEEE
Confidence 99 65332 23334 6788899999999986643
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.9e-07 Score=96.20 Aligned_cols=97 Identities=28% Similarity=0.256 Sum_probs=79.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
+|.+|+|.-||-|+++.- +|+ .|+ .+|+|+|+||.|+ ..+++++.|++.++ |+.++||.+++... ..+|-|+
T Consensus 188 ~GE~V~DmFAGVGpfsi~---~Ak-~g~-~~V~A~diNP~A~~~L~eNi~LN~v~~~-v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 188 EGETVLDMFAGVGPFSIP---IAK-KGR-PKVYAIDINPDAVEYLKENIRLNKVEGR-VEPILGDAREVAPELGVADRII 261 (341)
T ss_pred CCCEEEEccCCcccchhh---hhh-cCC-ceEEEEecCHHHHHHHHHHHHhcCccce-eeEEeccHHHhhhccccCCEEE
Confidence 478999999999999954 443 232 3599999999998 66778889999988 99999999998765 7899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
..+++ ...+++..+.+.+++||++-
T Consensus 262 m~~p~------~a~~fl~~A~~~~k~~g~iH 286 (341)
T COG2520 262 MGLPK------SAHEFLPLALELLKDGGIIH 286 (341)
T ss_pred eCCCC------cchhhHHHHHHHhhcCcEEE
Confidence 86654 34668888888999999875
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.4e-07 Score=98.17 Aligned_cols=109 Identities=20% Similarity=0.082 Sum_probs=77.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---CCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA---PEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~---p~k~Di 417 (626)
++.+|||+|||+|..+..+++.. + ..+|+|+|.++.+. .+++++++.+.... ++++.+|..+... .++||.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~---~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~-v~~~~~d~~~~~~~~~~~~fD~ 312 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELA---P-QAQVVALDIHEHRLKRVYENLKRLGLTIK-AETKDGDGRGPSQWAENEQFDR 312 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHc---C-CCeEEEEeCCHHHHHHHHHHHHHcCCCeE-EEEeccccccccccccccccCE
Confidence 56799999999999987554433 2 25999999999776 67777777777544 6668888776542 467999
Q ss_pred EEeccccc-cCC---CCC----------------cHHHHHHHHHhcccCcEEEeccce
Q psy17734 418 MVSELLGS-FGD---NEL----------------SPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 418 IVSEllgs-fg~---~El----------------~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
|+++..-+ +|. +.. ..++|+.+.++|||||.++=+.+|
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 99875422 111 110 135788888999999999855444
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.8e-07 Score=92.97 Aligned_cols=106 Identities=12% Similarity=0.045 Sum_probs=82.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--C-----CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--A-----PE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~-----p~ 413 (626)
+.++||++|+|+|.-+++++.+... ..+|+++|.++... .|+++.++.|+.++ |+++.+|..+.- + .+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~---~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~-I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPE---SGCLVACERDSNSLEVAKRYYELAGVSHK-VNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCc-EEEEEcCHHHHHHHHHhcccCC
Confidence 4579999999999999766554432 24899999999765 89999999999988 999999987641 1 35
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEecccee
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTS 456 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~ 456 (626)
+||+|+-+.- ...-++.++.+.++|+|||+++-+..-.
T Consensus 194 ~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278)
T PLN02476 194 SYDFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278)
T ss_pred CCCEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 8999976431 2224778888889999999998776533
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.8e-07 Score=90.65 Aligned_cols=98 Identities=16% Similarity=0.060 Sum_probs=68.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCC--------------CCCcEEEEEeccc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQW--------------AQSDVTIVSEDMR 407 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~--------------~~~nV~vi~~D~~ 407 (626)
++.+|||+|||.|.-+.+++. .| .+|+|||.++.|+.... .++++ ..+ |+++++|+.
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~----~G--~~V~avD~s~~Ai~~~~--~~~~l~~~~~~~~~~~~~~~~~-v~~~~~D~~ 107 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAE----QG--HEVLGVELSELAVEQFF--AENGLTPQTRQSGEFEHYQAGE-ITIYCGDFF 107 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHh----CC--CeEEEEccCHHHHHHHH--HHcCCCccccccccccccccCc-eEEEECccc
Confidence 346899999999999865432 34 59999999998884321 12222 244 999999999
Q ss_pred ccCCC--CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcE
Q psy17734 408 TWNAP--EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGI 448 (626)
Q Consensus 408 ~~~~p--~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi 448 (626)
++... .+||.|+-.-+-.....+.-+..+..+.++|||||+
T Consensus 108 ~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 108 ALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCR 150 (218)
T ss_pred CCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCe
Confidence 98643 578999864422222223235678888999999986
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=1e-06 Score=88.58 Aligned_cols=97 Identities=19% Similarity=0.150 Sum_probs=64.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++ + .+ .+|+++|.++.++ .+++.....+..++ |+++.+|.... .+.||+|++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~---~-~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~-i~~~~~d~~~~--~~~fD~v~~ 133 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLA---R-RG--AKVVASDISPQMVEEARERAPEAGLAGN-ITFEVGDLESL--LGRFDTVVC 133 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHH---H-cC--CEEEEEECCHHHHHHHHHHHHhcCCccC-cEEEEcCchhc--cCCcCEEEE
Confidence 45789999999999986443 2 23 3799999999887 66666556666555 99999995443 367999987
Q ss_pred cc-ccccCCCCCcHHHHHHHHHhcccCcE
Q psy17734 421 EL-LGSFGDNELSPECLYAAQKYLKEDGI 448 (626)
Q Consensus 421 El-lgsfg~~El~pe~L~~~~r~LkpgGi 448 (626)
-- +.++. .+....++..+.+.++++++
T Consensus 134 ~~~l~~~~-~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 134 LDVLIHYP-QEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred cchhhcCC-HHHHHHHHHHHHhhcCCeEE
Confidence 32 22221 22234566666665554444
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.1e-06 Score=95.41 Aligned_cols=95 Identities=16% Similarity=0.082 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC----C-CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN----A-PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~----~-p~k~ 415 (626)
++.+|||+|||+|.++..++ +.. .+|+|+|.|+.|+ .++++.+.++.. |++++.+|+.+.. . ..++
T Consensus 297 ~~~~VLDlgcGtG~~sl~la---~~~---~~V~gvD~s~~al~~A~~n~~~~~~~--~v~~~~~d~~~~l~~~~~~~~~f 368 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLA---RQA---AEVVGVEGVEAMVERARENARRNGLD--NVTFYHANLEEDFTDQPWALGGF 368 (443)
T ss_pred CCCEEEEEeccCCHHHHHHH---HhC---CEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEEeChHHhhhhhhhhcCCC
Confidence 45789999999999986433 322 3999999999887 777777778875 5999999997642 1 2579
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|+|++++.-. +..+.+..+.+ ++|+++++
T Consensus 369 D~Vi~dPPr~-----g~~~~~~~l~~-~~~~~ivy 397 (443)
T PRK13168 369 DKVLLDPPRA-----GAAEVMQALAK-LGPKRIVY 397 (443)
T ss_pred CEEEECcCCc-----ChHHHHHHHHh-cCCCeEEE
Confidence 9999988632 23456655544 57777644
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.8e-06 Score=93.88 Aligned_cols=95 Identities=11% Similarity=0.086 Sum_probs=71.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--CCCccEEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--PEKADIMV 419 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--p~k~DiIV 419 (626)
+.+|||+|||+|.++..+ +.. + .+|+|||.|+.|+ .++++.+.++.. |++++.+|++++.. ..++|+||
T Consensus 234 ~~~vLDL~cG~G~~~l~l---a~~-~--~~v~~vE~~~~av~~a~~N~~~~~~~--~~~~~~~d~~~~~~~~~~~~D~vi 305 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHC---AGP-D--TQLTGIEIESEAIACAQQSAQMLGLD--NLSFAALDSAKFATAQMSAPELVL 305 (374)
T ss_pred CCEEEEccCCccHHHHHH---hhc-C--CeEEEEECCHHHHHHHHHHHHHcCCC--cEEEEECCHHHHHHhcCCCCCEEE
Confidence 468999999999998643 332 2 3999999999888 777888888875 59999999987542 24699999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.++.-. ...+++++.+.+ ++|+++++
T Consensus 306 ~DPPr~----G~~~~~l~~l~~-~~p~~ivy 331 (374)
T TIGR02085 306 VNPPRR----GIGKELCDYLSQ-MAPKFILY 331 (374)
T ss_pred ECCCCC----CCcHHHHHHHHh-cCCCeEEE
Confidence 998842 223566666643 67877655
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.5e-06 Score=90.69 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=68.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--CCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--PEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--p~k~DiI 418 (626)
++.+|||+|||+|.++..+ ++. + .+|+|+|.|+.++ .++++.+.++.. |++++.+|+.++.. .+++|+|
T Consensus 173 ~~~~VLDl~cG~G~~sl~l---a~~-~--~~V~gvD~s~~av~~A~~n~~~~~l~--~v~~~~~D~~~~~~~~~~~~D~V 244 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHC---ATP-G--MQLTGIEISAEAIACAKQSAAELGLT--NVQFQALDSTQFATAQGEVPDLV 244 (315)
T ss_pred CCCEEEEccCCCCHHHHHH---Hhc-C--CEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEEcCHHHHHHhcCCCCeEE
Confidence 3578999999999998643 332 3 3999999999887 777888888874 59999999988642 3579999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|.++.-. | ..+++++.+.+ ++|+++++
T Consensus 245 v~dPPr~-G---~~~~~~~~l~~-~~~~~ivy 271 (315)
T PRK03522 245 LVNPPRR-G---IGKELCDYLSQ-MAPRFILY 271 (315)
T ss_pred EECCCCC-C---ccHHHHHHHHH-cCCCeEEE
Confidence 9988632 1 12344444333 45665544
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.3e-06 Score=85.46 Aligned_cols=92 Identities=16% Similarity=0.110 Sum_probs=60.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
++.+|||+|||+|.++..+.... .+ .+|+|||.|+.++...+.. . . +++++++|+.+...+++||+|++.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~--~~--~~v~giDiS~~~l~~A~~~----~-~-~~~~~~~d~~~~~~~~sfD~V~~~ 112 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLL--PF--KHIYGVEINEYAVEKAKAY----L-P-NINIIQGSLFDPFKDNFFDLVLTK 112 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhC--CC--CeEEEEECCHHHHHHHHhh----C-C-CCcEEEeeccCCCCCCCEEEEEEC
Confidence 45689999999999986543321 12 5999999999887433321 1 2 388889998883234689999985
Q ss_pred cccccCCCCCcHHHHHHHHHhc
Q psy17734 422 LLGSFGDNELSPECLYAAQKYL 443 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~L 443 (626)
-+-+....+...+++..+.|.+
T Consensus 113 ~vL~hl~p~~~~~~l~el~r~~ 134 (204)
T TIGR03587 113 GVLIHINPDNLPTAYRELYRCS 134 (204)
T ss_pred ChhhhCCHHHHHHHHHHHHhhc
Confidence 4333333333455666666665
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-06 Score=92.63 Aligned_cols=99 Identities=16% Similarity=0.122 Sum_probs=63.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCC---CCCcEEEEEecccccCCCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQW---AQSDVTIVSEDMRTWNAPEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~---~~~nV~vi~~D~~~~~~p~k~Di 417 (626)
++.+|||+|||+|.++..+++ .| .+|+|+|.|+.++ .++++....+. ...++++..+|++++ +++||+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~----~g--~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~ 215 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLAL----EG--AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDT 215 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHH----CC--CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCE
Confidence 457999999999999864433 23 4999999999887 66665443311 111489999998876 478999
Q ss_pred EEeccc-cccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 418 MVSELL-GSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 418 IVSEll-gsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|++-.. .++. .+...+++..+.+ +.++|++|
T Consensus 216 Vv~~~vL~H~p-~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 216 VTCLDVLIHYP-QDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred EEEcCEEEecC-HHHHHHHHHHHHh-hcCCEEEE
Confidence 998432 2221 1222334444443 45777766
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.6e-07 Score=89.89 Aligned_cols=109 Identities=13% Similarity=0.086 Sum_probs=82.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHH-HHHHHHHHHcCCCCCcEEEEEecccccC------C-CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSA-VVGLKYKKEEQWAQSDVTIVSEDMRTWN------A-PE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a-~~a~~~~~~n~~~~~nV~vi~~D~~~~~------~-p~ 413 (626)
+.++||+||||+|.-+++++++... +.+|++||.++.. ..|++..++.+++++ |+++.+|..++- . ++
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~---~g~i~tiE~~~~~~~~A~~~~~~ag~~~~-I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPE---DGKITTIEIDPERAEIARENFRKAGLDDR-IEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTT---TSEEEEEESSHHHHHHHHHHHHHTTGGGG-EEEEES-HHHHHHHHHHTTTTT
T ss_pred CCceEEEeccccccHHHHHHHhhcc---cceEEEecCcHHHHHHHHHHHHhcCCCCc-EEEEEeccHhhHHHHHhccCCC
Confidence 3478999999999988766655432 2599999999965 488899999999888 999999998741 1 25
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEE
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIA 459 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~a 459 (626)
+||+|+-+- +-..-+++++.+.++|+|||++|-+..-....
T Consensus 121 ~fD~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~ 161 (205)
T PF01596_consen 121 QFDFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLWRGS 161 (205)
T ss_dssp SEEEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTGGGG
T ss_pred ceeEEEEcc-----cccchhhHHHHHhhhccCCeEEEEccccccce
Confidence 799997632 11223678888889999999999887665543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-06 Score=94.83 Aligned_cols=98 Identities=17% Similarity=0.111 Sum_probs=75.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEEe
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMVS 420 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIVS 420 (626)
+.+|||++||+|.++. +++++.+. .+|+++|.|+.|+ .++++++.|+.. +++++++|.+++-. .++||+|+.
T Consensus 58 ~~~vLDl~aGsG~~~l---~~a~~~~~-~~V~a~Din~~Av~~a~~N~~~N~~~--~~~v~~~Da~~~l~~~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGI---RYALETGV-EKVTLNDINPDAVELIKKNLELNGLE--NEKVFNKDANALLHEERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHH---HHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCC--ceEEEhhhHHHHHhhcCCCCEEEE
Confidence 3589999999999995 44444443 4899999999988 778888888875 48899999987533 467999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
++.|+ ..++++.+-+.+++||++.-.
T Consensus 132 DP~Gs------~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 132 DPFGS------PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCCCC------cHHHHHHHHHHhcCCCEEEEE
Confidence 87532 245788877778999987644
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.8e-06 Score=90.90 Aligned_cols=108 Identities=18% Similarity=0.242 Sum_probs=76.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--cCCCCCcEEEEEecccccC--CCCCccE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--EQWAQSDVTIVSEDMRTWN--APEKADI 417 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--n~~~~~nV~vi~~D~~~~~--~p~k~Di 417 (626)
.++||.+|+|.|.++..+++ ..+. .+|++||+++..+ .+++.... .++.+.+++++.+|.+++- ..+++|+
T Consensus 104 pk~VLiiGgG~G~~~re~l~---~~~~-~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLR---HKTV-EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCEEEEECCCchHHHHHHHh---CCCC-CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccE
Confidence 46899999999999865443 2222 4899999999877 55555432 2344445999999999863 3478999
Q ss_pred EEeccccccC---CCCC-cHHHHH-HHHHhcccCcEEEeccc
Q psy17734 418 MVSELLGSFG---DNEL-SPECLY-AAQKYLKEDGISIPYNY 454 (626)
Q Consensus 418 IVSEllgsfg---~~El-~pe~L~-~~~r~LkpgGi~IP~~~ 454 (626)
|+.++..... ...+ ..++++ .+.+.|+|||+++-+..
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 9998654221 1122 367887 78899999999886543
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.5e-06 Score=89.17 Aligned_cols=120 Identities=24% Similarity=0.347 Sum_probs=81.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--cCCCCCcEEEEEecccccC--CCC-Cc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--EQWAQSDVTIVSEDMRTWN--APE-KA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--n~~~~~nV~vi~~D~~~~~--~p~-k~ 415 (626)
+.++||.||.|.|..+..++ +.... .+|++||.++..+ .+++.... .++.+.+++++.+|.+.+- ..+ ++
T Consensus 76 ~p~~VLiiGgG~G~~~~ell---~~~~~-~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELL---KHPPV-ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKY 151 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHT---TSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-E
T ss_pred CcCceEEEcCCChhhhhhhh---hcCCc-ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcc
Confidence 45789999999999986433 22222 4999999999876 55554432 2344445999999998862 345 89
Q ss_pred cEEEeccccccCCCCC--cHHHHHHHHHhcccCcEEEeccceeeEEeccChHhHHH
Q psy17734 416 DIMVSELLGSFGDNEL--SPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQ 469 (626)
Q Consensus 416 DiIVSEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l~~~ 469 (626)
|+|+.++....+.... ..++++.+.+.|+|||+++-+. ..|...+.....
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~----~~~~~~~~~~~~ 203 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA----GSPFLHPELFKS 203 (246)
T ss_dssp EEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE----EETTTTHHHHHH
T ss_pred cEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc----cCcccchHHHHH
Confidence 9999988764333322 4789999999999999999776 334444444443
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.9e-06 Score=86.31 Aligned_cols=112 Identities=22% Similarity=0.350 Sum_probs=86.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--cCC-CCCcEEEEEecccccC--CCCCccE
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--EQW-AQSDVTIVSEDMRTWN--APEKADI 417 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--n~~-~~~nV~vi~~D~~~~~--~p~k~Di 417 (626)
++||.||.|.|...+.+++.. .. .+++.||+++..+ .+++.... .+. ..| ++++.+|..++- .+++||+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~---~v-e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpR-v~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHL---PV-ERITMVEIDPAVIELARKYLPEPSGGADDPR-VEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CeEEEECCCccHHHHHHHhcC---Cc-ceEEEEEcCHHHHHHHHHhccCcccccCCCc-eEEEeccHHHHHHhCCCcCCE
Confidence 589999999999987554433 22 4999999999876 66665432 122 245 999999999874 3468999
Q ss_pred EEeccccccCCCCC--cHHHHHHHHHhcccCcEEEeccceeeEEe
Q psy17734 418 MVSELLGSFGDNEL--SPECLYAAQKYLKEDGISIPYNYTSYIAP 460 (626)
Q Consensus 418 IVSEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP~~~t~y~ap 460 (626)
||.+.-...|..+. ..++++++++.|+++|+++-+....+..+
T Consensus 153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 153 IIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred EEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence 99987665555555 37899999999999999999988777777
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.9e-06 Score=91.56 Aligned_cols=96 Identities=18% Similarity=0.151 Sum_probs=70.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC----C-CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN----A-PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~----~-p~k~ 415 (626)
++.+|||+|||+|.++..++ +.. .+|+|||.|+.++ .++++...++.. ||+++.+|+.++- . ..++
T Consensus 292 ~~~~vLDl~cG~G~~sl~la---~~~---~~V~~vE~~~~av~~a~~n~~~~~~~--nv~~~~~d~~~~l~~~~~~~~~~ 363 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLA---KQA---KSVVGIEVVPESVEKAQQNAELNGIA--NVEFLAGTLETVLPKQPWAGQIP 363 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHH---HhC---CEEEEEEcCHHHHHHHHHHHHHhCCC--ceEEEeCCHHHHHHHHHhcCCCC
Confidence 45789999999999996533 322 3999999999887 777787778875 6999999997641 1 2469
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|+|+.++... | +.+++++.+.+ ++|+++++
T Consensus 364 D~vi~dPPr~-G---~~~~~l~~l~~-l~~~~ivy 393 (431)
T TIGR00479 364 DVLLLDPPRK-G---CAAEVLRTIIE-LKPERIVY 393 (431)
T ss_pred CEEEECcCCC-C---CCHHHHHHHHh-cCCCEEEE
Confidence 9999987632 1 23667776544 78877654
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.6e-06 Score=85.56 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=86.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEE-ecccccC---CCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVS-EDMRTWN---APEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~-~D~~~~~---~p~k~D 416 (626)
+.++||++|++.|.=+++.+.+... +.++++||.|+... .|+++.++.|+.++ |+++. +|..+.- ..+.||
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~---~g~l~tiE~~~e~~~~A~~n~~~ag~~~~-i~~~~~gdal~~l~~~~~~~fD 134 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPD---DGRLTTIERDEERAEIARENLAEAGVDDR-IELLLGGDALDVLSRLLDGSFD 134 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCC---CCeEEEEeCCHHHHHHHHHHHHHcCCcce-EEEEecCcHHHHHHhccCCCcc
Confidence 4578999999999998776666543 35999999999654 99999999999998 99999 5876642 358999
Q ss_pred EEEeccccccCCCCC--cHHHHHHHHHhcccCcEEEeccceeeEE
Q psy17734 417 IMVSELLGSFGDNEL--SPECLYAAQKYLKEDGISIPYNYTSYIA 459 (626)
Q Consensus 417 iIVSEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP~~~t~y~a 459 (626)
+|+- |... -|++++.+.+.|+|||++|-+..-....
T Consensus 135 liFI-------DadK~~yp~~le~~~~lLr~GGliv~DNvl~~G~ 172 (219)
T COG4122 135 LVFI-------DADKADYPEYLERALPLLRPGGLIVADNVLFGGR 172 (219)
T ss_pred EEEE-------eCChhhCHHHHHHHHHHhCCCcEEEEeecccCCc
Confidence 9965 3333 4899999999999999999887765543
|
|
| >KOG1271|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=4e-06 Score=80.80 Aligned_cols=105 Identities=17% Similarity=0.239 Sum_probs=73.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-CCCCccEEEec-
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-APEKADIMVSE- 421 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-~p~k~DiIVSE- 421 (626)
+|||+|||-|.+-..+ ++ -|-..+.++||-++.|+ .|.....++++.+. |++-+.|+.+-. .+.+||+|.=-
T Consensus 70 ~VlDLGtGNG~~L~~L---~~-egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~-I~f~q~DI~~~~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQL---AK-EGFQSKLTGVDYSEKAVELAQNIAERDGFSNE-IRFQQLDITDPDFLSGQFDLVLDKG 144 (227)
T ss_pred ceeeccCCchHHHHHH---HH-hcCCCCccccccCHHHHHHHHHHHHhcCCCcc-eeEEEeeccCCcccccceeEEeecC
Confidence 8999999999987533 33 23334799999999998 55555667899987 999999998743 45789998541
Q ss_pred cccc---cCC--CCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 422 LLGS---FGD--NELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 422 llgs---fg~--~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
.++. .++ .+...-.++.+.+.|+|||+++-.++
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence 1111 111 11122356788899999999885544
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.29 E-value=6e-06 Score=84.66 Aligned_cols=99 Identities=20% Similarity=0.169 Sum_probs=75.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHH-HHHHHHHHHcCCCCCcEEEEEecccccC----CCCCc
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSA-VVGLKYKKEEQWAQSDVTIVSEDMRTWN----APEKA 415 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a-~~a~~~~~~n~~~~~nV~vi~~D~~~~~----~p~k~ 415 (626)
.++.+|++.|+|+|.|+..++++.... .+|+..|.++.. ..|+++.+..++.+. |++.+.|+.+-. ....+
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~---G~v~t~E~~~~~~~~A~~n~~~~gl~~~-v~~~~~Dv~~~g~~~~~~~~~ 114 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPT---GHVYTYEFREDRAEKARKNFERHGLDDN-VTVHHRDVCEEGFDEELESDF 114 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTT---SEEEEEESSHHHHHHHHHHHHHTTCCTT-EEEEES-GGCG--STT-TTSE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCC---eEEEccccCHHHHHHHHHHHHHcCCCCC-ceeEecceecccccccccCcc
Confidence 478999999999999998877776533 599999999864 599999999998775 999999996432 23679
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhc-ccCcEEE
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYL-KEDGISI 450 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~L-kpgGi~I 450 (626)
|.|+-++.. .-+++..+.+.| |+||.+.
T Consensus 115 DavfLDlp~-------Pw~~i~~~~~~L~~~gG~i~ 143 (247)
T PF08704_consen 115 DAVFLDLPD-------PWEAIPHAKRALKKPGGRIC 143 (247)
T ss_dssp EEEEEESSS-------GGGGHHHHHHHE-EEEEEEE
T ss_pred cEEEEeCCC-------HHHHHHHHHHHHhcCCceEE
Confidence 999887653 234888899999 8999765
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.6e-05 Score=77.85 Aligned_cols=121 Identities=19% Similarity=0.135 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCc
Q psy17734 320 IRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSD 398 (626)
Q Consensus 320 ~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~n 398 (626)
+.-++++..-+... ...+.+|||+-||+|.|+. +|..+.. .+|+.||.|..+. ..+++++.-+....
T Consensus 27 drVREalFNil~~~------~i~g~~~LDlFAGSGaLGl---EAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~- 94 (187)
T COG0742 27 DRVREALFNILAPD------EIEGARVLDLFAGSGALGL---EALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGE- 94 (187)
T ss_pred hHHHHHHHHhcccc------ccCCCEEEEecCCccHhHH---HHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCccc-
Confidence 34456666666531 1367899999999999995 5666533 4999999999888 66777777776676
Q ss_pred EEEEEeccccc--CCCC--CccEEEeccccccCCCCCcH--HHHHH--HHHhcccCcEEEeccce
Q psy17734 399 VTIVSEDMRTW--NAPE--KADIMVSELLGSFGDNELSP--ECLYA--AQKYLKEDGISIPYNYT 455 (626)
Q Consensus 399 V~vi~~D~~~~--~~p~--k~DiIVSEllgsfg~~El~p--e~L~~--~~r~LkpgGi~IP~~~t 455 (626)
++++..|...+ .... +||+|..++.-. .+..+ ..+.. -..+|+|+|.++-....
T Consensus 95 ~~~~~~da~~~L~~~~~~~~FDlVflDPPy~---~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 95 ARVLRNDALRALKQLGTREPFDLVFLDPPYA---KGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred eEEEeecHHHHHHhcCCCCcccEEEeCCCCc---cchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 99999999854 2333 499999988632 23332 23333 23579999998855443
|
|
| >KOG0820|consensus | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.5e-06 Score=84.47 Aligned_cols=74 Identities=28% Similarity=0.338 Sum_probs=60.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH-HHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL-KYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~-~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
+..+||++|.|||.|+..++++|+ +|+|||++|.++.-+ +..+....+++ .+++.||.-..+.| .+|++|+
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~k------kVvA~E~Dprmvael~krv~gtp~~~k-LqV~~gD~lK~d~P-~fd~cVs 129 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEAGK------KVVAVEIDPRMVAELEKRVQGTPKSGK-LQVLHGDFLKTDLP-RFDGCVS 129 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcC------eEEEEecCcHHHHHHHHHhcCCCccce-eeEEecccccCCCc-ccceeec
Confidence 678999999999999999898885 999999999776433 33333444577 99999999888774 6999999
Q ss_pred ccc
Q psy17734 421 ELL 423 (626)
Q Consensus 421 Ell 423 (626)
++.
T Consensus 130 NlP 132 (315)
T KOG0820|consen 130 NLP 132 (315)
T ss_pred cCC
Confidence 875
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.3e-05 Score=85.33 Aligned_cols=77 Identities=10% Similarity=0.104 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc-CCCCCcEEEEE-ecccccC-----CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE-QWAQSDVTIVS-EDMRTWN-----APE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n-~~~~~nV~vi~-~D~~~~~-----~p~ 413 (626)
+..+|||||||+|.+..++ +.+..+ .+++|+|+++.|+ .|++++..| ++.++ |+++. .|..++. ..+
T Consensus 114 ~~~~vLDIGtGag~I~~lL--a~~~~~--~~~~atDId~~Al~~A~~Nv~~Np~l~~~-I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLI--GVHEYG--WRFVGSDIDPQALASAQAIISANPGLNGA-IRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCceEEEecCCccHHHHHH--HhhCCC--CEEEEEeCCHHHHHHHHHHHHhccCCcCc-EEEEEccchhhhhhcccccCC
Confidence 4578999999999776432 333334 5999999999887 888899999 89988 99974 4443332 246
Q ss_pred CccEEEeccc
Q psy17734 414 KADIMVSELL 423 (626)
Q Consensus 414 k~DiIVSEll 423 (626)
+||+|||++.
T Consensus 189 ~fDlivcNPP 198 (321)
T PRK11727 189 RFDATLCNPP 198 (321)
T ss_pred ceEEEEeCCC
Confidence 8999999997
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.8e-06 Score=87.72 Aligned_cols=76 Identities=21% Similarity=0.215 Sum_probs=58.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||||||+|.++..++..+ .+|+|+|.++.++ .+++.....+..++ ++++++|+.+... .++|+||+
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~------~~V~avEiD~~li~~l~~~~~~~~~~~~-v~ii~~Dal~~~~-~~~d~Vva 107 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLA------KKVIAIEIDPRMVAELKKRFQNSPLASK-LEVIEGDALKTEF-PYFDVCVA 107 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhC------CcEEEEECCHHHHHHHHHHHHhcCCCCc-EEEEECCHhhhcc-cccCEEEe
Confidence 56789999999999997654432 3899999999887 55555555554454 9999999988766 47899999
Q ss_pred ccccc
Q psy17734 421 ELLGS 425 (626)
Q Consensus 421 Ellgs 425 (626)
++.-+
T Consensus 108 NlPY~ 112 (294)
T PTZ00338 108 NVPYQ 112 (294)
T ss_pred cCCcc
Confidence 87643
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.1e-06 Score=81.34 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=61.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccc-cC-C-CCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT-WN-A-PEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~-~~-~-p~k~DiI 418 (626)
++.+|||+|||+|.++..++. ..+ ..++|||.++.++...+. . +++++.+|+.+ +. . +++||+|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~---~~~--~~~~giD~s~~~i~~a~~-------~-~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRD---EKQ--VRGYGIEIDQDGVLACVA-------R-GVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHh---ccC--CcEEEEeCCHHHHHHHHH-------c-CCeEEEEEhhhcccccCCCCcCEE
Confidence 356899999999999754322 223 478999999876633221 1 38889999876 32 2 3689999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
++...-.. -+....+++.+.|.++++.+.+|.
T Consensus 80 i~~~~l~~--~~d~~~~l~e~~r~~~~~ii~~p~ 111 (194)
T TIGR02081 80 ILSQTLQA--TRNPEEILDEMLRVGRHAIVSFPN 111 (194)
T ss_pred EEhhHhHc--CcCHHHHHHHHHHhCCeEEEEcCC
Confidence 99542111 122355777777776655455443
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.5e-06 Score=90.04 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=87.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-----CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-----PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-----p~k~ 415 (626)
++++||++-|=||.++..|+. .|+ .+|++||+|..++ .++++..-|++....+.+|++|+.++-- .++|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~----gGA-~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAAL----GGA-SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred cCCeEEEecccCcHHHHHHHh----cCC-CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcc
Confidence 478999999999999964443 444 4999999999888 8999999999864449999999988732 2589
Q ss_pred cEEEeccccccCCCCCc--------HHHHHHHHHhcccCcEEEeccceeeEE
Q psy17734 416 DIMVSELLGSFGDNELS--------PECLYAAQKYLKEDGISIPYNYTSYIA 459 (626)
Q Consensus 416 DiIVSEllgsfg~~El~--------pe~L~~~~r~LkpgGi~IP~~~t~y~a 459 (626)
|+||.++. +|.-+... ..+++.+.+.|+|||+++-++++..+.
T Consensus 292 DlIilDPP-sF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~ 342 (393)
T COG1092 292 DLIILDPP-SFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS 342 (393)
T ss_pred cEEEECCc-ccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC
Confidence 99999987 45443331 345667788999999999888765544
|
|
| >KOG3191|consensus | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-05 Score=77.10 Aligned_cols=113 Identities=17% Similarity=0.186 Sum_probs=76.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
...+++||||+|..+.+++.. .+.+....|.|.||.|. .+++..+.|+- ++.+|..|.-.--.++++|+++-+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~---i~~~~~~latDiNp~A~~~Tl~TA~~n~~---~~~~V~tdl~~~l~~~~VDvLvfN 117 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASV---IGPQALYLATDINPEALEATLETARCNRV---HIDVVRTDLLSGLRNESVDVLVFN 117 (209)
T ss_pred ceeEEEecCCcchHHHHHHHh---cCCCceEEEecCCHHHHHHHHHHHHhcCC---ccceeehhHHhhhccCCccEEEEC
Confidence 468999999999999764433 23446899999999887 66777777765 389999998775445999999886
Q ss_pred ccc----------------ccCCCCC---cHHHHHHHHHhcccCcEEEeccceeeEEeccChHhHH
Q psy17734 422 LLG----------------SFGDNEL---SPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFT 468 (626)
Q Consensus 422 llg----------------sfg~~El---~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l~~ 468 (626)
..- ..|..++ +..++......|.|.|.+ |+..+.+.+...
T Consensus 118 PPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~-------Ylv~~~~N~p~e 176 (209)
T KOG3191|consen 118 PPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVF-------YLVALRANKPKE 176 (209)
T ss_pred CCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceE-------EeeehhhcCHHH
Confidence 521 0111112 233444455566777764 666676665543
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.3e-06 Score=84.16 Aligned_cols=108 Identities=14% Similarity=0.031 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--------CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--------AP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--------~p 412 (626)
+.++||+||+++|.=+.+.+++.. ...+|+++|.++... .|++...+.|+.++ |+++.||..+.- ..
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~---~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~-I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALP---EDGKILAMDINRENYELGLPVIQKAGVAHK-IDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCC---CCCEEEEEeCCHHHHHHHHHHHHHCCCCCc-eEEEeccHHHHHHHHHhccccC
Confidence 457899999999988776555543 235999999998654 88999999999988 999999987751 12
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeE
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYI 458 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~ 458 (626)
++||+|+-+- +.+.-+..++.+.+.|+|||++|-+..-...
T Consensus 155 ~~fD~iFiDa-----dK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G 195 (247)
T PLN02589 155 GTFDFIFVDA-----DKDNYINYHKRLIDLVKVGGVIGYDNTLWNG 195 (247)
T ss_pred CcccEEEecC-----CHHHhHHHHHHHHHhcCCCeEEEEcCCCCCC
Confidence 6899997632 2233477888888999999999877654443
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.1e-05 Score=83.36 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..+++. + .+|+|||.++.++ .+.+... .. + ||+++++|..++..+ .+|.||+
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~----~--~~v~~vEid~~~~~~l~~~~~--~~-~-~v~ii~~D~~~~~~~-~~d~Vv~ 97 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR----A--KKVYAIELDPRLAEFLRDDEI--AA-G-NVEIIEGDALKVDLP-EFNKVVS 97 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh----C--CEEEEEECCHHHHHHHHHHhc--cC-C-CEEEEEeccccCCch-hceEEEE
Confidence 5678999999999999755443 2 3999999999877 4443332 22 3 599999999998764 5899999
Q ss_pred cccc
Q psy17734 421 ELLG 424 (626)
Q Consensus 421 Ellg 424 (626)
++.-
T Consensus 98 NlPy 101 (258)
T PRK14896 98 NLPY 101 (258)
T ss_pred cCCc
Confidence 9874
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.2e-06 Score=86.99 Aligned_cols=131 Identities=15% Similarity=0.167 Sum_probs=82.5
Q ss_pred hhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCc----hHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHH
Q psy17734 312 FEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRG----PLVTASLNAAKEANRKVRVYAVEKNMSAV-VGL 386 (626)
Q Consensus 312 fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG----~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~ 386 (626)
|-.|+.-.+..++.+. .. .+..+|+.+||+|| .++|.+..+....+.+++|+|.|+|+.++ .|+
T Consensus 96 FFRd~~~f~~L~~~~~----~~-------~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar 164 (287)
T PRK10611 96 FFREAHHFPILAEHAR----RR-------SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKAR 164 (287)
T ss_pred ccCCcHHHHHHHHHHH----hc-------CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHH
Confidence 6677766655544331 10 12479999999999 34444444332222247999999999877 443
Q ss_pred HHH------------------HH------------cCCCCCcEEEEEecccccC--CCCCccEEEec-cccccCCCCCcH
Q psy17734 387 KYK------------------KE------------EQWAQSDVTIVSEDMRTWN--APEKADIMVSE-LLGSFGDNELSP 433 (626)
Q Consensus 387 ~~~------------------~~------------n~~~~~nV~vi~~D~~~~~--~p~k~DiIVSE-llgsfg~~El~p 433 (626)
+-+ .. .++... |++...|+.+.+ .++++|+|+|. .+.+| +.+...
T Consensus 165 ~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~-V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-~~~~~~ 242 (287)
T PRK10611 165 SGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANY-VDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-DKTTQE 242 (287)
T ss_pred hCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHcc-CEEEcccCCCCCCccCCCcceeeHhhHHhcC-CHHHHH
Confidence 321 00 012234 788888887643 24789999994 44444 445457
Q ss_pred HHHHHHHHhcccCcEEEeccce
Q psy17734 434 ECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 434 e~L~~~~r~LkpgGi~IP~~~t 455 (626)
.++..+.+.|+|||.++-....
T Consensus 243 ~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 243 RILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred HHHHHHHHHhCCCcEEEEeCcc
Confidence 7889999999999998755443
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.2e-05 Score=81.93 Aligned_cols=132 Identities=23% Similarity=0.249 Sum_probs=83.0
Q ss_pred hhHHHHhhCCHHHHHHHHHHHHHHH---h-hccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHH
Q psy17734 306 SFTYEVFEKDPIKYIRYQEAVQQAL---L-DRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMS 381 (626)
Q Consensus 306 s~tYe~fe~D~~ry~~Y~~AI~~al---~-d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~ 381 (626)
...|+.+++|+.....|.+++...- . +.+.......+..+|+|||+|+|.++..++++-. + .+++.+|. |.
T Consensus 60 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P--~--l~~~v~Dl-p~ 134 (241)
T PF00891_consen 60 TPFFEYLEEDPELAKRFNAAMAEYSRLNAFDILLEAFDFSGFKTVVDVGGGSGHFAIALARAYP--N--LRATVFDL-PE 134 (241)
T ss_dssp S-HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHST--T--SEEEEEE--HH
T ss_pred CcHHHhhhhChHHHHHHHHHHHhhhhcchhhhhhccccccCccEEEeccCcchHHHHHHHHHCC--C--Ccceeecc-Hh
Confidence 3467778888877777776654421 1 1111111122456899999999999975544332 3 68999998 44
Q ss_pred HH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEE-eccccccCCCCCcHHHHHHHHHhcccC--cEEEecc
Q psy17734 382 AV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMV-SELLGSFGDNELSPECLYAAQKYLKED--GISIPYN 453 (626)
Q Consensus 382 a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIV-SEllgsfg~~El~pe~L~~~~r~Lkpg--Gi~IP~~ 453 (626)
.+ .+.+ .++ |+++.+|+. -+.|. +|+++ +..++.+.+ +....+|..+.+.|+|| |.++-..
T Consensus 135 v~~~~~~-------~~r-v~~~~gd~f-~~~P~-~D~~~l~~vLh~~~d-~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 135 VIEQAKE-------ADR-VEFVPGDFF-DPLPV-ADVYLLRHVLHDWSD-EDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp HHCCHHH-------TTT-EEEEES-TT-TCCSS-ESEEEEESSGGGS-H-HHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hhhcccc-------ccc-cccccccHH-hhhcc-ccceeeehhhhhcch-HHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 33 3333 566 999999998 45566 99975 455555443 33466789999999998 8866443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.9e-05 Score=78.66 Aligned_cols=124 Identities=21% Similarity=0.217 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcE
Q psy17734 321 RYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDV 399 (626)
Q Consensus 321 ~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV 399 (626)
--++.|.+++..+..+ ....+||||-||.|-...-++..... ....|.-.|.++..+ ..++.++.+|+.+. +
T Consensus 118 ~l~~~i~~ai~~L~~~----g~pvrIlDIAaG~GRYvlDal~~~~~--~~~~i~LrDys~~Nv~~g~~li~~~gL~~i-~ 190 (311)
T PF12147_consen 118 HLEELIRQAIARLREQ----GRPVRILDIAAGHGRYVLDALEKHPE--RPDSILLRDYSPINVEKGRALIAERGLEDI-A 190 (311)
T ss_pred HHHHHHHHHHHHHHhc----CCceEEEEeccCCcHHHHHHHHhCCC--CCceEEEEeCCHHHHHHHHHHHHHcCCccc-e
Confidence 3456666666543221 25579999999999998544433321 135899999999665 77778888999987 8
Q ss_pred EEEEecccccC----CCCCccE-EEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 400 TIVSEDMRTWN----APEKADI-MVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 400 ~vi~~D~~~~~----~p~k~Di-IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
++.++|+.+-. ...+.++ |||-+.+.|.+|++....|.++.+.+.|||.+|-
T Consensus 191 ~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIy 247 (311)
T PF12147_consen 191 RFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIY 247 (311)
T ss_pred EEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEE
Confidence 99999988753 2245677 6788888899999888889999999999999983
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.5e-05 Score=86.59 Aligned_cols=98 Identities=16% Similarity=0.093 Sum_probs=76.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhc-CCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--CCCccEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEA-NRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--PEKADIM 418 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~-g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--p~k~DiI 418 (626)
+.+|||+.||+|.++. +++++. |+ .+|+++|+|+.|+ .++++++.|+.. +++++++|...+-. ..+||+|
T Consensus 45 ~~~vLD~faGsG~rgi---r~a~e~~ga-~~Vv~nD~n~~Av~~i~~N~~~N~~~--~~~v~~~Da~~~l~~~~~~fDvI 118 (374)
T TIGR00308 45 YINIADALSASGIRAI---RYAHEIEGV-REVFANDINPKAVESIKNNVEYNSVE--NIEVPNEDAANVLRYRNRKFHVI 118 (374)
T ss_pred CCEEEECCCchhHHHH---HHHhhCCCC-CEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEchhHHHHHHHhCCCCCEE
Confidence 3689999999999995 555553 44 4999999999998 777888888875 59999999987732 3679999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..++.| ....+++.+-+.++++|++.-.
T Consensus 119 dlDPfG------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 119 DIDPFG------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred EeCCCC------CcHHHHHHHHHhcccCCEEEEE
Confidence 987743 1136889888899999986543
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.9e-06 Score=83.82 Aligned_cols=102 Identities=20% Similarity=0.180 Sum_probs=77.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCC----CcEEEEEecccccC--C-CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQ----SDVTIVSEDMRTWN--A-PEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~----~nV~vi~~D~~~~~--~-p~k 414 (626)
++.+|||...|-|-.+..+++.++ .+|+.||+||+.+... +.|.|+. .+|++|.||+.++- + ++.
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA-----~~VitvEkdp~VLeLa---~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGA-----IHVITVEKDPNVLELA---KLNPWSRELFEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCC-----cEEEEEeeCCCeEEee---ccCCCCccccccccEEecccHHHHHhcCCccc
Confidence 578999999999998865544443 5999999999876222 2244432 24899999998763 2 378
Q ss_pred ccEEEeccccccCCCCC-cHHHHHHHHHhcccCcEEEe
Q psy17734 415 ADIMVSELLGSFGDNEL-SPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El-~pe~L~~~~r~LkpgGi~IP 451 (626)
||.||-++.-+....|+ +.++.+...|.|||||.++=
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 99999999876666677 57788999999999999873
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.6e-06 Score=84.50 Aligned_cols=72 Identities=22% Similarity=0.235 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCC-ccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEK-ADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k-~DiIVS 420 (626)
++.+|||+|||+|.++..++.. + .+|+|+|.++.+...++... .. + +++++++|+.++..+.- .|.||+
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~----~--~~v~avE~d~~~~~~~~~~~-~~--~-~v~~i~~D~~~~~~~~~~~~~vv~ 111 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLER----A--AKVTAVEIDRDLAPILAETF-AE--D-NLTIIEGDALKVDLSELQPLKVVA 111 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHh----C--CcEEEEECCHHHHHHHHHhh-cc--C-ceEEEEChhhcCCHHHcCcceEEE
Confidence 4578999999999999654433 2 28999999998774333221 11 3 49999999999876532 589999
Q ss_pred ccc
Q psy17734 421 ELL 423 (626)
Q Consensus 421 Ell 423 (626)
++.
T Consensus 112 NlP 114 (272)
T PRK00274 112 NLP 114 (272)
T ss_pred eCC
Confidence 886
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.8e-06 Score=84.61 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc---CCCCCccEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW---NAPEKADIM 418 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~---~~p~k~DiI 418 (626)
-.++||+|||||..+..+-..+ .++++||+|.+++ .+..+ +.=+ ++.++|...+ ..++++|+|
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a------~~ltGvDiS~nMl~kA~eK----g~YD---~L~~Aea~~Fl~~~~~er~DLi 192 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA------DRLTGVDISENMLAKAHEK----GLYD---TLYVAEAVLFLEDLTQERFDLI 192 (287)
T ss_pred cceeeecccCcCcccHhHHHHH------hhccCCchhHHHHHHHHhc----cchH---HHHHHHHHHHhhhccCCcccch
Confidence 3689999999999987543333 3899999999887 33322 1111 2333443322 235899999
Q ss_pred Ee-ccccccCCCCCcHHHHHHHHHhcccCcEEEeccce
Q psy17734 419 VS-ELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 419 VS-Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
++ +.|-+.|.-|. ++-++...|+|||.++.+.-+
T Consensus 193 ~AaDVl~YlG~Le~---~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 193 VAADVLPYLGALEG---LFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred hhhhHHHhhcchhh---HHHHHHHhcCCCceEEEEecc
Confidence 88 55556655454 778889999999998876443
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.5e-05 Score=78.28 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHH--HcCCCCCcEEEEEecccccCCCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKK--EEQWAQSDVTIVSEDMRTWNAPEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~--~n~~~~~nV~vi~~D~~~~~~p~k~DiI 418 (626)
..++||.+|.|-|...+..++.- .+|+-||++++.+ .+++..- ..++.|.+|+++.. +.+- ..++||+|
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~------~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~-~~~~fDVI 143 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD------THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL-DIKKYDLI 143 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC------CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc-cCCcCCEE
Confidence 45789999999999987655432 3999999999877 5544221 23577767999872 2221 13789999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEe
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAP 460 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~ap 460 (626)
|.+.+ -.++..+.+.+.|+|||+++-|+.+.+..+
T Consensus 144 IvDs~-------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~ 178 (262)
T PRK00536 144 ICLQE-------PDIHKIDGLKRMLKEDGVFISVAKHPLLEH 178 (262)
T ss_pred EEcCC-------CChHHHHHHHHhcCCCcEEEECCCCcccCH
Confidence 99753 126788889999999999999998777654
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.6e-05 Score=76.35 Aligned_cols=101 Identities=20% Similarity=0.322 Sum_probs=68.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc----CCCCCccEE
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW----NAPEKADIM 418 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~----~~p~k~DiI 418 (626)
.++||||||.|-+... .|... .+..++|||+....+ .+.+.+...++. ||.++++|+..+ ..++.+|-|
T Consensus 19 ~l~lEIG~G~G~~l~~--~A~~~--Pd~n~iGiE~~~~~v~~a~~~~~~~~l~--Nv~~~~~da~~~l~~~~~~~~v~~i 92 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIE--LAKRN--PDINFIGIEIRKKRVAKALRKAEKRGLK--NVRFLRGDARELLRRLFPPGSVDRI 92 (195)
T ss_dssp EEEEEET-TTSHHHHH--HHHHS--TTSEEEEEES-HHHHHHHHHHHHHHTTS--SEEEEES-CTTHHHHHSTTTSEEEE
T ss_pred CeEEEecCCCCHHHHH--HHHHC--CCCCEEEEecchHHHHHHHHHHHhhccc--ceEEEEccHHHHHhhcccCCchheE
Confidence 4899999999999853 23332 336999999998765 666666677776 899999999883 235778887
Q ss_pred EeccccccCC-----CCC-cHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELLGSFGD-----NEL-SPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEllgsfg~-----~El-~pe~L~~~~r~LkpgGi~I 450 (626)
.-...+-+-- ..+ .+++++...+.|+|||.+.
T Consensus 93 ~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~ 130 (195)
T PF02390_consen 93 YINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELY 130 (195)
T ss_dssp EEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEE
T ss_pred EEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEE
Confidence 6644433222 122 3889999999999999763
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.3e-05 Score=78.54 Aligned_cols=96 Identities=19% Similarity=0.217 Sum_probs=60.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-C-C-CCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-N-A-PEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-~-~-p~k~DiI 418 (626)
++.+|||+|||.|.|...+. .-+ +++.+|||.++..+.+.-. + .|.|+++|+.+- . . +..||.|
T Consensus 13 pgsrVLDLGCGdG~LL~~L~-~~k----~v~g~GvEid~~~v~~cv~---r-----Gv~Viq~Dld~gL~~f~d~sFD~V 79 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLK-DEK----QVDGYGVEIDPDNVAACVA---R-----GVSVIQGDLDEGLADFPDQSFDYV 79 (193)
T ss_pred CCCEEEecCCCchHHHHHHH-Hhc----CCeEEEEecCHHHHHHHHH---c-----CCCEEECCHHHhHhhCCCCCccEE
Confidence 67899999999999964322 212 3699999999866533222 2 388999999863 2 2 3789998
Q ss_pred Ee-ccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 419 VS-ELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 419 VS-Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
|. ..+-..- ...++|+++-|.-|..=+.+|..
T Consensus 80 IlsqtLQ~~~---~P~~vL~EmlRVgr~~IVsFPNF 112 (193)
T PF07021_consen 80 ILSQTLQAVR---RPDEVLEEMLRVGRRAIVSFPNF 112 (193)
T ss_pred ehHhHHHhHh---HHHHHHHHHHHhcCeEEEEecCh
Confidence 75 2221110 01346666666655555666663
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.02 E-value=2e-05 Score=82.41 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=76.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC----CCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN----APEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~----~p~k~D 416 (626)
++++|||+-|=||.++..|+. .|+ .+|++||.|..++ .++++...|++....++++.+|+.++- -.++||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~----gGA-~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD 197 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAA----GGA-KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFD 197 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHH----TTE-SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EE
T ss_pred CCCceEEecCCCCHHHHHHHH----CCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCC
Confidence 467999999999999964433 444 4999999999887 888999999987334999999987642 236999
Q ss_pred EEEeccccccCCCCC-----cHHHHHHHHHhcccCcEEEeccceeeE
Q psy17734 417 IMVSELLGSFGDNEL-----SPECLYAAQKYLKEDGISIPYNYTSYI 458 (626)
Q Consensus 417 iIVSEllgsfg~~El-----~pe~L~~~~r~LkpgGi~IP~~~t~y~ 458 (626)
+||.++. +|.-... ..+++..+.++|+|||+++-++++-.+
T Consensus 198 ~IIlDPP-sF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i 243 (286)
T PF10672_consen 198 LIILDPP-SFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHI 243 (286)
T ss_dssp EEEE--S-SEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS
T ss_pred EEEECCC-CCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 9999997 4433222 134666777899999999877664433
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.5e-05 Score=82.45 Aligned_cols=92 Identities=16% Similarity=0.176 Sum_probs=65.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC----------
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP---------- 412 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p---------- 412 (626)
.+|||+|||+|.++..+.+. + .+|+|||.++.++ .++++.+.|+.. |++++.+|+.++-..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~---~---~~v~~vE~~~~av~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~~~~ 270 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN---F---RRVLATEIAKPSVNAAQYNIAANNID--NVQIIRMSAEEFTQAMNGVREFRRL 270 (353)
T ss_pred CcEEEEeccccHHHHHHHHh---C---CEEEEEECCHHHHHHHHHHHHHcCCC--cEEEEEcCHHHHHHHHhhccccccc
Confidence 36999999999999633222 2 3999999999887 778888888875 599999999874211
Q ss_pred -------CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 413 -------EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 413 -------~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.++|+|+.++.-. | ..+++++.+.+ |+++++
T Consensus 271 ~~~~~~~~~~d~v~lDPPR~-G---~~~~~l~~l~~---~~~ivY 308 (353)
T TIGR02143 271 KGIDLKSYNCSTIFVDPPRA-G---LDPDTCKLVQA---YERILY 308 (353)
T ss_pred cccccccCCCCEEEECCCCC-C---CcHHHHHHHHc---CCcEEE
Confidence 2379999998742 2 23556666543 555433
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.3e-05 Score=78.29 Aligned_cols=102 Identities=13% Similarity=0.131 Sum_probs=70.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcC-----CccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-CCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEAN-----RKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-APEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g-----~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-~p~k 414 (626)
++.+|+|--||+|.+...++..+.... .+.+++|+|+++.++ .++++....+..+. |.+.+.|++++. .++.
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~-i~~~~~D~~~l~~~~~~ 106 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY-IDFIQWDARELPLPDGS 106 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG-EEEEE--GGGGGGTTSB
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc-eEEEecchhhcccccCC
Confidence 567899999999999876665554321 112499999999887 88888888898887 999999999999 4579
Q ss_pred ccEEEeccccccCCCCC--------cHHHHHHHHHhcccC
Q psy17734 415 ADIMVSELLGSFGDNEL--------SPECLYAAQKYLKED 446 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El--------~pe~L~~~~r~Lkpg 446 (626)
+|.||+++. ||.... ...+++.+.+.|++.
T Consensus 107 ~d~IvtnPP--yG~r~~~~~~~~~ly~~~~~~~~~~l~~~ 144 (179)
T PF01170_consen 107 VDAIVTNPP--YGRRLGSKKDLEKLYRQFLRELKRVLKPR 144 (179)
T ss_dssp SCEEEEE----STTSHCHHHHHHHHHHHHHHHHHCHSTTC
T ss_pred CCEEEECcc--hhhhccCHHHHHHHHHHHHHHHHHHCCCC
Confidence 999999985 333222 134566677778873
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.2e-05 Score=82.23 Aligned_cols=90 Identities=18% Similarity=0.159 Sum_probs=64.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--C---------
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--A--------- 411 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~--------- 411 (626)
.+|||++||+|.++..+.+.+ .+|+|||.++.|+ .++++.+.|+.. |++++.+|+.++- .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~------~~v~~vE~~~~ai~~a~~N~~~~~~~--~v~~~~~d~~~~l~~~~~~~~~~~~ 279 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF------RRVLATEISKPSVAAAQYNIAANGID--NVQIIRMSAEEFTQAMNGVREFNRL 279 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC------CEEEEEECCHHHHHHHHHHHHHhCCC--cEEEEECCHHHHHHHHhhccccccc
Confidence 469999999999996433222 3999999999887 777888888875 5999999997741 1
Q ss_pred ------CCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcE
Q psy17734 412 ------PEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGI 448 (626)
Q Consensus 412 ------p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi 448 (626)
..++|+||.++.- -| ..++++..+.+ ++++
T Consensus 280 ~~~~~~~~~~D~v~lDPPR-~G---~~~~~l~~l~~---~~~i 315 (362)
T PRK05031 280 KGIDLKSYNFSTIFVDPPR-AG---LDDETLKLVQA---YERI 315 (362)
T ss_pred ccccccCCCCCEEEECCCC-CC---CcHHHHHHHHc---cCCE
Confidence 1258999999984 22 23556665543 5554
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.5e-05 Score=75.96 Aligned_cols=99 Identities=19% Similarity=0.213 Sum_probs=59.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcC--CCCCcEEEEEecccc-c----CCC
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQ--WAQSDVTIVSEDMRT-W----NAP 412 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~--~~~~nV~vi~~D~~~-~----~~p 412 (626)
.++++||++|||+|..++.++.. .+. .+|++-|.++ +. ..+.++..|+ ...+ |++..-|-.+ . ..+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~---~~~-~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~-v~v~~L~Wg~~~~~~~~~~ 117 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKL---FGA-ARVVLTDYNE-VLELLRRNIELNGSLLDGR-VSVRPLDWGDELDSDLLEP 117 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT----T--SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS-
T ss_pred cCCceEEEECCccchhHHHHHhc---cCC-ceEEEeccch-hhHHHHHHHHhcccccccc-ccCcEEEecCccccccccc
Confidence 46789999999999999754443 122 4999999999 54 6667777776 5555 8887765432 1 123
Q ss_pred CCccEEEe-ccccccCCCCCcHHHHHHHHHhcccCcE
Q psy17734 413 EKADIMVS-ELLGSFGDNELSPECLYAAQKYLKEDGI 448 (626)
Q Consensus 413 ~k~DiIVS-Ellgsfg~~El~pe~L~~~~r~LkpgGi 448 (626)
.+||+|+. +.+ .+.+..+.+++.+.++|+++|.
T Consensus 118 ~~~D~IlasDv~---Y~~~~~~~L~~tl~~ll~~~~~ 151 (173)
T PF10294_consen 118 HSFDVILASDVL---YDEELFEPLVRTLKRLLKPNGK 151 (173)
T ss_dssp SSBSEEEEES-----S-GGGHHHHHHHHHHHBTT-TT
T ss_pred ccCCEEEEeccc---chHHHHHHHHHHHHHHhCCCCE
Confidence 58999876 443 2345557788999999999887
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.1e-05 Score=80.94 Aligned_cols=75 Identities=23% Similarity=0.328 Sum_probs=60.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCC--CccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPE--KADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~--k~DiIV 419 (626)
++.+|++||+|.|.|+..+++.++ +|+|||+++..+..++.... .. + |+++|++|+-..+.+. +.+.||
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~~~------~v~aiEiD~~l~~~L~~~~~-~~-~-n~~vi~~DaLk~d~~~l~~~~~vV 100 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLERAA------RVTAIEIDRRLAEVLKERFA-PY-D-NLTVINGDALKFDFPSLAQPYKVV 100 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhhcC------eEEEEEeCHHHHHHHHHhcc-cc-c-ceEEEeCchhcCcchhhcCCCEEE
Confidence 467999999999999987666553 89999999988766655432 22 3 5999999999999876 789999
Q ss_pred eccccc
Q psy17734 420 SELLGS 425 (626)
Q Consensus 420 SEllgs 425 (626)
+++.-+
T Consensus 101 aNlPY~ 106 (259)
T COG0030 101 ANLPYN 106 (259)
T ss_pred EcCCCc
Confidence 998743
|
|
| >KOG2361|consensus | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.3e-06 Score=81.62 Aligned_cols=109 Identities=22% Similarity=0.234 Sum_probs=76.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHH-HHHcCCCCCcEEEEEecccccC-----CCCCccEE
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKY-KKEEQWAQSDVTIVSEDMRTWN-----APEKADIM 418 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~-~~~n~~~~~nV~vi~~D~~~~~-----~p~k~DiI 418 (626)
+||+||||-|..+.-.++-.+.. +.+|+|+|-+|.|+...+. ...+. .+ +.....|+..-. .++.+|++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~--~l~v~acDfsp~Ai~~vk~~~~~~e--~~-~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNN--RLKVYACDFSPRAIELVKKSSGYDE--SR-VEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hheeeccCCCcccchhhhcCCCC--CeEEEEcCCChHHHHHHHhccccch--hh-hcccceeccchhccCCCCcCccceE
Confidence 79999999998876555444322 2799999999999844443 22222 23 555555554322 23689999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeE
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYI 458 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~ 458 (626)
+.-..-|....|.+...++.+.++|||||.++-..|-.|-
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 8755555556667788899999999999999999887763
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.9e-05 Score=77.03 Aligned_cols=102 Identities=14% Similarity=0.066 Sum_probs=65.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHH-------H----cCC-CCCcEEEEEeccccc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKK-------E----EQW-AQSDVTIVSEDMRTW 409 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~-------~----n~~-~~~nV~vi~~D~~~~ 409 (626)
++.+||+.|||.|.-+.+++. .| .+|+|||.++.|+......+ . ... +. +|+++++|..++
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~----~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~-~i~~~~gD~f~l 115 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLS----KG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGD-DIEIYVADIFNL 115 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHh----CC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccC-ceEEEEccCcCC
Confidence 356999999999998865433 24 59999999999884432210 0 001 23 499999999998
Q ss_pred CCC----CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 410 NAP----EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 410 ~~p----~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
..+ ++||.|.=--.-..+..+.-......+.++|+|||.++
T Consensus 116 ~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~ll 160 (226)
T PRK13256 116 PKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQIL 160 (226)
T ss_pred CccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 642 57999753111111111112445667788999999755
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.9e-05 Score=74.83 Aligned_cols=125 Identities=21% Similarity=0.248 Sum_probs=74.3
Q ss_pred hhHHHHhhCCHHHHHHHHHHHHHHHhhccCCC--------cCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEe
Q psy17734 306 SFTYEVFEKDPIKYIRYQEAVQQALLDRVSPE--------QADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVE 377 (626)
Q Consensus 306 s~tYe~fe~D~~ry~~Y~~AI~~al~d~~~~~--------~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE 377 (626)
...++.|.+||.-++.|.+...+.+..|-... ....+..+|.|+|||.+.|+. +.. .+.+|+..|
T Consensus 28 ~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~----~~~---~~~~V~SfD 100 (219)
T PF05148_consen 28 EEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAK----AVP---NKHKVHSFD 100 (219)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHH----H-----S---EEEEE
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHH----hcc---cCceEEEee
Confidence 34567788898888888887777665432110 012245799999999999972 222 125899999
Q ss_pred CCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEecc--ccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 378 KNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSEL--LGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 378 ~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSEl--lgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
.-. .| + .|+.+||..++++ +.+|++|.-| || ...+.++.++.|.||+||++.-...
T Consensus 101 Lva----------~n---~---~Vtacdia~vPL~~~svDv~VfcLSLMG-----Tn~~~fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 101 LVA----------PN---P---RVTACDIANVPLEDESVDVAVFCLSLMG-----TNWPDFIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp SS-----------SS---T---TEEES-TTS-S--TT-EEEEEEES---S-----S-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccC----------CC---C---CEEEecCccCcCCCCceeEEEEEhhhhC-----CCcHHHHHHHHheeccCcEEEEEEe
Confidence 763 11 2 2556999999886 7899998744 43 2468899999999999998764444
Q ss_pred eeeE
Q psy17734 455 TSYI 458 (626)
Q Consensus 455 t~y~ 458 (626)
++-.
T Consensus 160 ~SRf 163 (219)
T PF05148_consen 160 KSRF 163 (219)
T ss_dssp GGG-
T ss_pred cccC
Confidence 4433
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.89 E-value=2e-05 Score=78.20 Aligned_cols=138 Identities=20% Similarity=0.206 Sum_probs=75.8
Q ss_pred hhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCc----hHHHHHHHHHhhc-CCccEEEEEeCCHHHH-HH
Q psy17734 312 FEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRG----PLVTASLNAAKEA-NRKVRVYAVEKNMSAV-VG 385 (626)
Q Consensus 312 fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG----~Ls~~al~Aa~~~-g~~~~V~AVE~np~a~-~a 385 (626)
|-.|+.-.+..++.+...+.+... ..+..+|+.+||+|| .|++.+..+.... +.+.+|+|.|.|+.++ .|
T Consensus 5 FFRd~~~f~~l~~~vlp~~~~~~~----~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~A 80 (196)
T PF01739_consen 5 FFRDPEQFEALRDEVLPPLLARAR----PGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKA 80 (196)
T ss_dssp TTTTTTHHHHHHHHHH-------C----S-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhhccccC----CCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHH
Confidence 666776667776666633222111 124579999999999 3444433322222 2257999999999877 44
Q ss_pred HHHH--------------HH-------cCC------CCCcEEEEEecccc-cCCCCCccEEEe-ccccccCCCCCcHHHH
Q psy17734 386 LKYK--------------KE-------EQW------AQSDVTIVSEDMRT-WNAPEKADIMVS-ELLGSFGDNELSPECL 436 (626)
Q Consensus 386 ~~~~--------------~~-------n~~------~~~nV~vi~~D~~~-~~~p~k~DiIVS-Ellgsfg~~El~pe~L 436 (626)
++-+ .+ ++| .+ +|++...|..+ ....+++|+|+| +.|-+| +.+....++
T Consensus 81 r~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~-~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl 158 (196)
T PF01739_consen 81 RAGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRK-MVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-DPETQQRVL 158 (196)
T ss_dssp HHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHT-TEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHH
T ss_pred HhCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcC-ceEEEecccCCCCcccCCccEEEecCEEEEe-CHHHHHHHH
Confidence 3311 00 011 12 48899988888 444589999999 566555 445457788
Q ss_pred HHHHHhcccCcEEEeccce
Q psy17734 437 YAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 437 ~~~~r~LkpgGi~IP~~~t 455 (626)
+...+.|+|||.++-....
T Consensus 159 ~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 159 RRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp HHHGGGEEEEEEEEE-TT-
T ss_pred HHHHHHcCCCCEEEEecCc
Confidence 8999999999998865543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.3e-05 Score=78.68 Aligned_cols=72 Identities=21% Similarity=0.229 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCcc---EE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKAD---IM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~D---iI 418 (626)
++.+|||+|||+|.++..+++.+ .+|+|+|.++.+...++... .. .. +++++++|+.++..+ .+| +|
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~------~~v~~iE~d~~~~~~l~~~~-~~-~~-~v~v~~~D~~~~~~~-~~d~~~~v 98 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRA------KKVTAIEIDPRLAEILRKLL-SL-YE-RLEVIEGDALKVDLP-DFPKQLKV 98 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC------CcEEEEECCHHHHHHHHHHh-Cc-CC-cEEEEECchhcCChh-HcCCcceE
Confidence 56799999999999997554433 27999999998774444322 11 23 499999999988764 466 89
Q ss_pred Eeccc
Q psy17734 419 VSELL 423 (626)
Q Consensus 419 VSEll 423 (626)
|+++.
T Consensus 99 vsNlP 103 (253)
T TIGR00755 99 VSNLP 103 (253)
T ss_pred EEcCC
Confidence 99875
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00015 Score=80.97 Aligned_cols=109 Identities=21% Similarity=0.136 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiI 418 (626)
++.+|||++||.|.=+..++. ..+.+..|+|+|.++.-. ...+++.+-|.. ||.+.+.|.+.+. .++.||.|
T Consensus 113 pg~~VLD~CAAPGgKTt~la~---~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~--nv~v~~~D~~~~~~~~~~~fD~I 187 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAA---LMNNQGAIVANEYSASRVKVLHANISRCGVS--NVALTHFDGRVFGAALPETFDAI 187 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHH---HcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeCchhhhhhhchhhcCeE
Confidence 678999999999999865433 333335999999998655 666677777765 7999999998763 35789999
Q ss_pred Eeccccc----cCCCCC-----c-----------HHHHHHHHHhcccCcEEEeccce
Q psy17734 419 VSELLGS----FGDNEL-----S-----------PECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 419 VSEllgs----fg~~El-----~-----------pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
+.+..-| +--+.. . -++|+.+.++|||||+++=+.||
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 9765422 221110 1 24677778899999999855444
|
|
| >KOG3010|consensus | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.6e-06 Score=82.26 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=66.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-CCCCccEEEe-
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-APEKADIMVS- 420 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-~p~k~DiIVS- 420 (626)
..++|+|||+|.-++ -.+... .+|+|+|.|+.++ ++.+.-...-..-. .+....++.++. .++++|+|++
T Consensus 35 ~~a~DvG~G~Gqa~~---~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~-~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAAR---GIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTP-STMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred ceEEEeccCCCcchH---HHHHhh---hhheeecCCHHHHHHhhcCCCcccccCC-ccccccccccccCCCcceeeehhh
Confidence 389999999993332 333333 3999999999777 44433211111112 455555666654 3589999987
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCc-EEEeccceeeEEeccChHh
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDG-ISIPYNYTSYIAPIMSHKL 466 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgG-i~IP~~~t~y~api~s~~l 466 (626)
+-++.| ++ +++...+.|.||++| ++.-=.|+- -.|-+++.
T Consensus 108 qa~HWF-dl---e~fy~~~~rvLRk~Gg~iavW~Y~d--d~v~~pE~ 148 (261)
T KOG3010|consen 108 QAVHWF-DL---ERFYKEAYRVLRKDGGLIAVWNYND--DFVDWPEF 148 (261)
T ss_pred hhHHhh-ch---HHHHHHHHHHcCCCCCEEEEEEccC--CCcCCHHH
Confidence 445444 33 458888999998766 554443332 34445543
|
|
| >KOG3420|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.8e-05 Score=73.71 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=58.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCcc
Q psy17734 339 ADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKAD 416 (626)
Q Consensus 339 ~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~D 416 (626)
++.++++++|+|||+|.|+. +....+. ..|.|+|++|.|. .+.++...-+. ++.++++|+.+..+. ..||
T Consensus 45 gdiEgkkl~DLgcgcGmLs~----a~sm~~~-e~vlGfDIdpeALEIf~rNaeEfEv---qidlLqcdildle~~~g~fD 116 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSI----AFSMPKN-ESVLGFDIDPEALEIFTRNAEEFEV---QIDLLQCDILDLELKGGIFD 116 (185)
T ss_pred ccccCcchhhhcCchhhhHH----HhhcCCC-ceEEeeecCHHHHHHHhhchHHhhh---hhheeeeeccchhccCCeEe
Confidence 35688999999999999984 2333343 4999999999887 66666554444 489999999988754 6799
Q ss_pred EEEeccc
Q psy17734 417 IMVSELL 423 (626)
Q Consensus 417 iIVSEll 423 (626)
..|-+..
T Consensus 117 taviNpp 123 (185)
T KOG3420|consen 117 TAVINPP 123 (185)
T ss_pred eEEecCC
Confidence 9888763
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.78 E-value=8.3e-05 Score=75.09 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=64.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH-HHHHH-c------C---CCCCcEEEEEecccccC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL-KYKKE-E------Q---WAQSDVTIVSEDMRTWN 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~-~~~~~-n------~---~~~~nV~vi~~D~~~~~ 410 (626)
++.+||+.|||+|.-+.+++.. | .+|+|||.++.|+... +.... . . ....+|+++++|..++.
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~----G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~ 110 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ----G--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELP 110 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT----T--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGG
T ss_pred CCCeEEEeCCCChHHHHHHHHC----C--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCC
Confidence 4568999999999987644332 4 5999999999988432 22111 0 0 11124899999999987
Q ss_pred CC--CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 411 AP--EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 411 ~p--~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.. ++||+|.=--.-..+..+.-+...+.+.++|||||.++
T Consensus 111 ~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 111 PEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp GSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred hhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 54 47999964221112222222556677788999999943
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >KOG3045|consensus | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00019 Score=72.97 Aligned_cols=120 Identities=20% Similarity=0.347 Sum_probs=80.3
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhccCCC--------cCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCC
Q psy17734 308 TYEVFEKDPIKYIRYQEAVQQALLDRVSPE--------QADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN 379 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI~~al~d~~~~~--------~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~n 379 (626)
...-|-.|+.-.+.|.+.....+..|-.+. ....+..+|.|+|||-+-++. . ...+|+..|.-
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~------~---~~~kV~SfDL~ 208 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS------S---ERHKVHSFDLV 208 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh------c---cccceeeeeee
Confidence 334455566666666555554443321110 011256799999999998852 1 22489999965
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEecc--ccccCCCCCcHHHHHHHHHhcccCcEEEecccee
Q psy17734 380 MSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSEL--LGSFGDNELSPECLYAAQKYLKEDGISIPYNYTS 456 (626)
Q Consensus 380 p~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSEl--lgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~ 456 (626)
+ + |=.|+.+||++++++ +.+||+|.-| || ..+.+++..+.|.||+||. +
T Consensus 209 a--------~--------~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-----tn~~df~kEa~RiLk~gG~-------l 260 (325)
T KOG3045|consen 209 A--------V--------NERVIACDMRNVPLEDESVDVAVFCLSLMG-----TNLADFIKEANRILKPGGL-------L 260 (325)
T ss_pred c--------C--------CCceeeccccCCcCccCcccEEEeeHhhhc-----ccHHHHHHHHHHHhccCce-------E
Confidence 3 1 345788999999876 7899988743 43 3457789999999999997 5
Q ss_pred eEEeccCh
Q psy17734 457 YIAPIMSH 464 (626)
Q Consensus 457 y~api~s~ 464 (626)
|+|-|.|.
T Consensus 261 ~IAEv~SR 268 (325)
T KOG3045|consen 261 YIAEVKSR 268 (325)
T ss_pred EEEehhhh
Confidence 78888775
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00027 Score=69.54 Aligned_cols=99 Identities=18% Similarity=0.162 Sum_probs=71.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEeccc
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELL 423 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEll 423 (626)
+++|+|+|-|.=+.-++-+.. +.+|+-||.+..=. .....+..-++. ||+++++++++....++||+|+|--+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p----~~~~~LvEs~~KK~~FL~~~~~~L~L~--nv~v~~~R~E~~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP----DLQVTLVESVGKKVAFLKEVVRELGLS--NVEVINGRAEEPEYRESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T----TSEEEEEESSHHHHHHHHHHHHHHT-S--SEEEEES-HHHTTTTT-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhCC----CCcEEEEeCCchHHHHHHHHHHHhCCC--CEEEEEeeecccccCCCccEEEeehh
Confidence 799999999988764333332 26999999998655 334444556776 79999999999555689999999655
Q ss_pred cccCCCCCcHHHHHHHHHhcccCcEEEeccce
Q psy17734 424 GSFGDNELSPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 424 gsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
+ .++.++.-+..+|++||.++...+.
T Consensus 125 ~------~l~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 125 A------PLDKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp S------SHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred c------CHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 3 2466777788899999998866553
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00026 Score=66.44 Aligned_cols=107 Identities=21% Similarity=0.286 Sum_probs=70.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcC--CCCCcEEEEEecccccCCCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQ--WAQSDVTIVSEDMRTWNAPEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~--~~~~nV~vi~~D~~~~~~p~k~DiI 418 (626)
+...|+|+|||.|-|++.++..........+|+|||.++... .+.+..+.-+ +... ++...+++.+.......+++
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKR-LSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhcc-chhhccchhhhcccCCCeEE
Confidence 567899999999999986554222112336999999998665 4443333333 5444 88888877766555678888
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcE-EEeccc
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGI-SIPYNY 454 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi-~IP~~~ 454 (626)
|+ |.. ++.+++.+|+.+.+ -.-.++ ++|+-|
T Consensus 104 vg--LHa--CG~Ls~~~l~~~~~-~~~~~l~~vpCCy 135 (141)
T PF13679_consen 104 VG--LHA--CGDLSDRALRLFIR-PNARFLVLVPCCY 135 (141)
T ss_pred EE--eec--ccchHHHHHHHHHH-cCCCEEEEcCCcc
Confidence 87 443 44577888877655 222333 567755
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00014 Score=73.90 Aligned_cols=93 Identities=16% Similarity=0.209 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEE-EEEecccccCCC-CCccEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVT-IVSEDMRTWNAP-EKADIM 418 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~-vi~~D~~~~~~p-~k~DiI 418 (626)
.++++|||+|||||.++..+++.+ + .+|+|||.+++++.. +. ..+ .+ |. +-..+++..... -..|++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g----a-~~v~avD~~~~~l~~-~l-~~~---~~-v~~~~~~ni~~~~~~~~~~d~~ 142 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG----A-KEVYGVDVGYNQLAE-KL-RQD---ER-VKVLERTNIRYVTPADIFPDFA 142 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC----C-CEEEEEeCCHHHHHH-HH-hcC---CC-eeEeecCCcccCCHhHcCCCce
Confidence 367899999999999997665543 2 499999999965533 11 111 12 32 333455533211 012333
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+++. +|... -.++..+.+.|+| |.+|
T Consensus 143 ~~Dv--sfiS~---~~~l~~i~~~l~~-~~~~ 168 (228)
T TIGR00478 143 TFDV--SFISL---ISILPELDLLLNP-NDLT 168 (228)
T ss_pred eeeE--EEeeh---HhHHHHHHHHhCc-CeEE
Confidence 3332 12111 2257777888888 7655
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0001 Score=78.83 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=64.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH---------cCCCCCcEEEEEecccccC-
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE---------EQWAQSDVTIVSEDMRTWN- 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~---------n~~~~~nV~vi~~D~~~~~- 410 (626)
++.+|||+|||.|.-......+ +. .+++|+|++..++ .|++..+. ....- ...++.+|...-.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~----~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f-~a~f~~~D~f~~~l 135 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA----KI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDF-IAEFIAADCFSESL 135 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT----T--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECC-EEEEEESTTCCSHH
T ss_pred CCCeEEEecCCCchhHHHHHhc----CC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccc-hhheeccccccchh
Confidence 5689999999999865433333 22 4999999998776 44443311 01112 2677888875421
Q ss_pred ----CC--CCccEEEecc-ccccCCCCCc-HHHHHHHHHhcccCcEEE
Q psy17734 411 ----AP--EKADIMVSEL-LGSFGDNELS-PECLYAAQKYLKEDGISI 450 (626)
Q Consensus 411 ----~p--~k~DiIVSEl-lgsfg~~El~-pe~L~~~~r~LkpgGi~I 450 (626)
.+ .+||+|-+-. |++....|.. ..+|..+...|+|||++|
T Consensus 136 ~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FI 183 (331)
T PF03291_consen 136 REKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFI 183 (331)
T ss_dssp HCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred hhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 22 4899997755 5555555554 458899999999999976
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00024 Score=72.07 Aligned_cols=101 Identities=22% Similarity=0.305 Sum_probs=73.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC---CC-CCccEE
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---AP-EKADIM 418 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---~p-~k~DiI 418 (626)
.++|+||||.|-+.. ..|++ ..+.-++|||+....+ .+++.+.+.++. ||.++++|+.++- .+ +.+|-|
T Consensus 50 pi~lEIGfG~G~~l~---~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l~--Nlri~~~DA~~~l~~~~~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLV---EMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGLK--NLRLLCGDAVEVLDYLIPDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHH---HHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCCC--cEEEEcCCHHHHHHhcCCCCCeeEE
Confidence 589999999999874 33332 3447999999987655 777888888875 7999999998763 23 367777
Q ss_pred EeccccccCCC-----CC-cHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELLGSFGDN-----EL-SPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEllgsfg~~-----El-~pe~L~~~~r~LkpgGi~I 450 (626)
.-...+-+--. .+ .+++++...+.|||||.+-
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~ 161 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLH 161 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEE
Confidence 65333322211 22 4889999999999999865
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00034 Score=71.61 Aligned_cols=90 Identities=24% Similarity=0.306 Sum_probs=61.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC-CCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN-APEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~-~p~k~DiIVS 420 (626)
+..++||||||.|-.+.. .+... .+|+|.|.|+.|...++. .| .+++..| +|. .+.+||+|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~---l~~~f---~~v~aTE~S~~Mr~rL~~---kg-----~~vl~~~--~w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTER---LAPLF---KEVYATEASPPMRWRLSK---KG-----FTVLDID--DWQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHH---HHhhc---ceEEeecCCHHHHHHHHh---CC-----CeEEehh--hhhccCCceEEEee
Confidence 457899999999999854 33333 289999999988655543 23 4454333 354 2468999977
Q ss_pred -ccccccCCCCCcH-HHHHHHHHhcccCcEEEe
Q psy17734 421 -ELLGSFGDNELSP-ECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 -Ellgsfg~~El~p-e~L~~~~r~LkpgGi~IP 451 (626)
++++- -..| .+|..+.+.|+|+|++|-
T Consensus 158 LNvLDR----c~~P~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 158 LNVLDR----CDRPLTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred hhhhhc----cCCHHHHHHHHHHHhCCCCEEEE
Confidence 44432 2233 578899999999998763
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00013 Score=80.60 Aligned_cols=95 Identities=22% Similarity=0.217 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC----CCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP----EKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p----~k~D 416 (626)
++.+|+|+-||.|.+++. .|++. .+|+|||.++.++ .|.++++.|+.. |++++.+|.+++... .++|
T Consensus 293 ~~~~vlDlYCGvG~f~l~---lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~--N~~f~~~~ae~~~~~~~~~~~~d 364 (432)
T COG2265 293 GGERVLDLYCGVGTFGLP---LAKRV---KKVHGVEISPEAVEAAQENAAANGID--NVEFIAGDAEEFTPAWWEGYKPD 364 (432)
T ss_pred CCCEEEEeccCCChhhhh---hcccC---CEEEEEecCHHHHHHHHHHHHHcCCC--cEEEEeCCHHHHhhhccccCCCC
Confidence 567999999999999964 33322 4999999999988 778888889987 699999999987542 5889
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEE
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGIS 449 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~ 449 (626)
.||-++.....+ +++++.+.+ ++|..++
T Consensus 365 ~VvvDPPR~G~~----~~~lk~l~~-~~p~~Iv 392 (432)
T COG2265 365 VVVVDPPRAGAD----REVLKQLAK-LKPKRIV 392 (432)
T ss_pred EEEECCCCCCCC----HHHHHHHHh-cCCCcEE
Confidence 999999865433 356666654 3455543
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00018 Score=68.74 Aligned_cols=104 Identities=20% Similarity=0.208 Sum_probs=76.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC------CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA------PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~------p~k~ 415 (626)
.+.-||++|.|||.++.+.+..+- ++..++++|-|+.-+..+... . + .+.+|+||..++.. ...|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv---~~~~L~~iE~~~dF~~~L~~~----~-p-~~~ii~gda~~l~~~l~e~~gq~~ 118 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGV---RPESLTAIEYSPDFVCHLNQL----Y-P-GVNIINGDAFDLRTTLGEHKGQFF 118 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCC---CccceEEEEeCHHHHHHHHHh----C-C-CccccccchhhHHHHHhhcCCCee
Confidence 466899999999999987665443 345999999999877655443 1 2 38899999988862 2579
Q ss_pred cEEEeccc-cccCCCCCcHHHHHHHHHhcccCcEEEeccce
Q psy17734 416 DIMVSELL-GSFGDNELSPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 416 DiIVSEll-gsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
|.|||-+. -+|-. ...-++|+.....|..||.++--.|+
T Consensus 119 D~viS~lPll~~P~-~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 119 DSVISGLPLLNFPM-HRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eeEEeccccccCcH-HHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 99999663 22211 11346888888889999999877776
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00053 Score=63.84 Aligned_cols=65 Identities=20% Similarity=0.158 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCCch-HHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC--CCccEE
Q psy17734 342 VVTTIMVVGAGRGP-LVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP--EKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~-Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p--~k~DiI 418 (626)
++.+|+|||||+|. ++..+. +.| ..|+|+|.|+.++...+. + .++++.+|+.+-.+. +.+|+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~----~~G--~~ViaIDi~~~aV~~a~~---~-----~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLK----ESG--FDVIVIDINEKAVEKAKK---L-----GLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHH----HCC--CEEEEEECCHHHHHHHHH---h-----CCeEEECcCCCCCHHHHhcCCEE
Confidence 45789999999997 664322 345 599999999987633322 1 288999999876543 789999
Q ss_pred Ee
Q psy17734 419 VS 420 (626)
Q Consensus 419 VS 420 (626)
.|
T Consensus 82 ys 83 (134)
T PRK04148 82 YS 83 (134)
T ss_pred EE
Confidence 88
|
|
| >KOG2899|consensus | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00032 Score=70.73 Aligned_cols=106 Identities=17% Similarity=0.183 Sum_probs=68.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc--------------------------
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE-------------------------- 392 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n-------------------------- 392 (626)
.++++-+|||||-.|.++ +..++..|+ ..|.|||+++..+ .|++.+...
T Consensus 56 ~f~~~~~LDIGCNsG~lt---~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~ 131 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLT---LSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRN 131 (288)
T ss_pred ccCcceeEeccCCcchhH---HHHHHhhcc-ceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccc
Confidence 356788999999999999 466777787 4899999999776 666654210
Q ss_pred -------------CCCCC-cEEEEEecccccCCCCCccEEEe----ccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 393 -------------QWAQS-DVTIVSEDMRTWNAPEKADIMVS----ELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 393 -------------~~~~~-nV~vi~~D~~~~~~p~k~DiIVS----Ellgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.|-.+ |..+-..|+-+. ...+||+|++ -|+.---..|++-.++..+.++|.|||++|
T Consensus 132 ~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv 206 (288)
T KOG2899|consen 132 EADRAFTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV 206 (288)
T ss_pred cccccccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE
Confidence 00000 111112223211 2258999866 333211123557789999999999999977
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0018 Score=67.48 Aligned_cols=127 Identities=17% Similarity=0.217 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHH-HcCCCC
Q psy17734 319 YIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKK-EEQWAQ 396 (626)
Q Consensus 319 y~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~-~n~~~~ 396 (626)
|..|.+.+..-+...... ......+|+=||+|.=||+.. ..+++.+....|.++|.++.|. .+++.++ ..+++.
T Consensus 99 y~nY~~L~~lE~~~l~~~--~~~~p~rVaFIGSGPLPlT~i--~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~ 174 (276)
T PF03059_consen 99 YPNYEKLVRLEYAALRIH--AGDPPSRVAFIGSGPLPLTSI--VLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSK 174 (276)
T ss_dssp HHHHHHHHHHHHH-HTT----TT---EEEEE---SS-HHHH--HHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-S
T ss_pred HHHHHHHHHHHHHHHhhc--CCcccceEEEEcCCCcchHHH--HHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccC
Confidence 456666665544321100 011235899999998888764 3344344335899999999988 6666666 467888
Q ss_pred CcEEEEEecccccCCC-CCccEEE-eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 397 SDVTIVSEDMRTWNAP-EKADIMV-SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 397 ~nV~vi~~D~~~~~~p-~k~DiIV-SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+ ++++.+|..+.... ..+|+|+ +-+.| .+.|.-.++++.+.+.++||+.++-.
T Consensus 175 ~-m~f~~~d~~~~~~dl~~~DvV~lAalVg--~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 175 R-MSFITADVLDVTYDLKEYDVVFLAALVG--MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp S-EEEEES-GGGG-GG----SEEEE-TT-S------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred C-eEEEecchhccccccccCCEEEEhhhcc--cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 7 99999999877543 5899874 44443 23344577999999999999988865
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG1661|consensus | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00054 Score=67.84 Aligned_cols=101 Identities=22% Similarity=0.197 Sum_probs=68.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--------cCCCCCcEEEEEecccccCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--------EQWAQSDVTIVSEDMRTWNAP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--------n~~~~~nV~vi~~D~~~~~~p 412 (626)
++...||+|.|+|-|+.++.+.....| ..+.+||.-++.+ .+.+++.. ..|...++.++.+|.+....+
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g--~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATG--GNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCC--ccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 678999999999999876554433233 2349999998877 55665532 234433599999999997654
Q ss_pred -CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcE-EEec
Q psy17734 413 -EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGI-SIPY 452 (626)
Q Consensus 413 -~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi-~IP~ 452 (626)
.++|.|-. | -..++..+.....|++||. +||-
T Consensus 160 ~a~YDaIhv---G-----Aaa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 160 QAPYDAIHV---G-----AAASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cCCcceEEE---c-----cCccccHHHHHHhhccCCeEEEee
Confidence 78999965 2 2234455666666777664 5543
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00029 Score=71.15 Aligned_cols=94 Identities=22% Similarity=0.297 Sum_probs=68.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEE-EecccccCC---CCCc
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIV-SEDMRTWNA---PEKA 415 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi-~~D~~~~~~---p~k~ 415 (626)
.++.+|||+|+-||.++..+++.++ .+|||||..-+.. .-++. +.+ |.++ ..++|.+.. .+++
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gA-----k~VyavDVG~~Ql~~kLR~------d~r-V~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGA-----KHVYAVDVGYGQLHWKLRN------DPR-VIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCC-----cEEEEEEccCCccCHhHhc------CCc-EEEEecCChhhCCHHHcccCC
Confidence 4789999999999999988777654 4999999986544 22221 234 5554 467777764 3689
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|+++++. || ..+..+|-.+...++|+|.+++
T Consensus 146 d~~v~Dv--SF---ISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 146 DLIVIDV--SF---ISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred CeEEEEe--eh---hhHHHHHHHHHHhcCCCceEEE
Confidence 9999987 44 2345678888889999987663
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00053 Score=80.64 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhc--------------------------------------CCccEEEEEeCCHHHH
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEA--------------------------------------NRKVRVYAVEKNMSAV 383 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~--------------------------------------g~~~~V~AVE~np~a~ 383 (626)
++..++|-+||+|.+...++..+... ....+|+|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 35789999999999997776643310 0113799999999887
Q ss_pred -HHHHHHHHcCCCCCcEEEEEecccccCCC---CCccEEEeccc
Q psy17734 384 -VGLKYKKEEQWAQSDVTIVSEDMRTWNAP---EKADIMVSELL 423 (626)
Q Consensus 384 -~a~~~~~~n~~~~~nV~vi~~D~~~~~~p---~k~DiIVSEll 423 (626)
.+++++..+++.+. |+++++|+.++..+ +++|+||+++.
T Consensus 270 ~~A~~N~~~~g~~~~-i~~~~~D~~~~~~~~~~~~~d~IvtNPP 312 (702)
T PRK11783 270 QAARKNARRAGVAEL-ITFEVKDVADLKNPLPKGPTGLVISNPP 312 (702)
T ss_pred HHHHHHHHHcCCCcc-eEEEeCChhhcccccccCCCCEEEECCC
Confidence 88999999999887 99999999998654 36999999985
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00021 Score=74.01 Aligned_cols=73 Identities=25% Similarity=0.362 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCC----CccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPE----KADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~----k~Di 417 (626)
++..|+|+|+|+|.++..++..+ .+|++||+++.....++.... -.. |++++++|..++..+. +...
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~------~~v~~vE~d~~~~~~L~~~~~--~~~-~~~vi~~D~l~~~~~~~~~~~~~~ 100 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG------KRVIAVEIDPDLAKHLKERFA--SNP-NVEVINGDFLKWDLYDLLKNQPLL 100 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS------SEEEEEESSHHHHHHHHHHCT--TCS-SEEEEES-TTTSCGGGHCSSSEEE
T ss_pred CCCEEEEeCCCCccchhhHhccc------CcceeecCcHhHHHHHHHHhh--hcc-cceeeecchhccccHHhhcCCceE
Confidence 56899999999999998766554 399999999987755554322 123 5999999999998765 6778
Q ss_pred EEeccc
Q psy17734 418 MVSELL 423 (626)
Q Consensus 418 IVSEll 423 (626)
||+++.
T Consensus 101 vv~NlP 106 (262)
T PF00398_consen 101 VVGNLP 106 (262)
T ss_dssp EEEEET
T ss_pred EEEEec
Confidence 999875
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00057 Score=72.41 Aligned_cols=117 Identities=20% Similarity=0.325 Sum_probs=85.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHH-----HHHHHcCCCCCcEEEEEecccccC--CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGL-----KYKKEEQWAQSDVTIVSEDMRTWN--APE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~-----~~~~~n~~~~~nV~vi~~D~~~~~--~p~ 413 (626)
+-..||.+|.|.|.-.+.++ +..+. .+|+-||.+|.++ .+. +..+.+.+.|..|+++..|..+|- ..+
T Consensus 289 ~a~~vLvlGGGDGLAlRell---kyP~~-~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~ 364 (508)
T COG4262 289 GARSVLVLGGGDGLALRELL---KYPQV-EQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAAD 364 (508)
T ss_pred ccceEEEEcCCchHHHHHHH---hCCCc-ceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcc
Confidence 34579999999998765433 33333 4999999999776 333 344556677767999999999984 337
Q ss_pred CccEEEecccccc--CCCCC-cHHHHHHHHHhcccCcEEEeccceeeEEecc
Q psy17734 414 KADIMVSELLGSF--GDNEL-SPECLYAAQKYLKEDGISIPYNYTSYIAPIM 462 (626)
Q Consensus 414 k~DiIVSEllgsf--g~~El-~pe~L~~~~r~LkpgGi~IP~~~t~y~api~ 462 (626)
+||.+|-++.+-- ....+ +.|+..-+.+.|+++|+|+-|+.+-|-.|=.
T Consensus 365 ~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~v 416 (508)
T COG4262 365 MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRV 416 (508)
T ss_pred cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCce
Confidence 9999999886532 11222 4567777788999999999999988887743
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.49 E-value=3.4e-05 Score=75.08 Aligned_cols=95 Identities=22% Similarity=0.231 Sum_probs=56.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC----------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA---------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~---------- 411 (626)
++.+|||+||++|.++..+++.. +...+|+|||..+.. ... ++..+.+|+.+...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~---~~~~~v~avDl~~~~----------~~~--~~~~i~~d~~~~~~~~~i~~~~~~ 87 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRG---GPAGRVVAVDLGPMD----------PLQ--NVSFIQGDITNPENIKDIRKLLPE 87 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTST---TTEEEEEEEESSSTG----------S-T--TEEBTTGGGEEEEHSHHGGGSHGT
T ss_pred cccEEEEcCCcccceeeeeeecc---cccceEEEEeccccc----------ccc--ceeeeecccchhhHHHhhhhhccc
Confidence 45899999999999997555443 223699999999751 111 47777777654321
Q ss_pred -CCCccEEEeccccccCCCCC-----cH----HHHHHHHHhcccCcEEEe
Q psy17734 412 -PEKADIMVSELLGSFGDNEL-----SP----ECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 412 -p~k~DiIVSEllgsfg~~El-----~p----e~L~~~~r~LkpgGi~IP 451 (626)
.+++|+|+|+.......... +. ..+.-+.++|||||.+|-
T Consensus 88 ~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~ 137 (181)
T PF01728_consen 88 SGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVI 137 (181)
T ss_dssp TTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred cccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEE
Confidence 15899999987332222111 11 123344577999998663
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00088 Score=66.62 Aligned_cols=111 Identities=15% Similarity=0.137 Sum_probs=72.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC---------C
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA---------P 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~---------p 412 (626)
++.+|+|+||-.|.++..+. +..+.+.+|+|||..|+.. .. +|.++++|+++-+. .
T Consensus 45 ~~~~ViDLGAAPGgWsQva~---~~~~~~~~ivavDi~p~~~----------~~--~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAA---KKLGAGGKIVAVDILPMKP----------IP--GVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHH---HHhCCCCcEEEEECccccc----------CC--CceEEeeeccCccHHHHHHHHcCC
Confidence 67899999999999997544 4445445799999998432 11 59999999987542 1
Q ss_pred CCccEEEeccccccCCCCCcHH---------HHHHHHHhcccCcEEEeccceeeEEeccChHhHHHHh
Q psy17734 413 EKADIMVSELLGSFGDNELSPE---------CLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVK 471 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe---------~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l~~~~~ 471 (626)
.++|+|+|+..-....+....+ .++-+..+|+|||.++-- ..+.=...++...++
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K----~fqg~~~~~~l~~~~ 173 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK----VFQGEDFEDLLKALR 173 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE----EEeCCCHHHHHHHHH
Confidence 4589999988654433333221 233455789999987632 233334444544444
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00026 Score=68.17 Aligned_cols=72 Identities=13% Similarity=0.039 Sum_probs=49.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCC----CccEEE
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPE----KADIMV 419 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~----k~DiIV 419 (626)
+|+|+.||.|..+...++.. .+|+|||++|..+ .++.+.+-.|..++ |+++++|..++.... .+|+|+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~------~~Viaidid~~~~~~a~hNa~vYGv~~~-I~~i~gD~~~~~~~~~~~~~~D~vF 74 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF------DRVIAIDIDPERLECAKHNAEVYGVADN-IDFICGDFFELLKRLKSNKIFDVVF 74 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-------EEEEEES-HHHHHHHHHHHHHTT-GGG-EEEEES-HHHHGGGB------SEEE
T ss_pred EEEEeccCcCHHHHHHHHhC------CeEEEEECCHHHHHHHHHHHHHcCCCCc-EEEEeCCHHHHHhhccccccccEEE
Confidence 79999999999986444332 3999999999766 77777777787776 999999998864322 289998
Q ss_pred eccc
Q psy17734 420 SELL 423 (626)
Q Consensus 420 SEll 423 (626)
..+.
T Consensus 75 lSPP 78 (163)
T PF09445_consen 75 LSPP 78 (163)
T ss_dssp E---
T ss_pred ECCC
Confidence 7663
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00088 Score=75.88 Aligned_cols=103 Identities=20% Similarity=0.218 Sum_probs=73.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC---CCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---APEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---~p~k~Di 417 (626)
...++||||||.|-+.. ..|+ ...+..++|||+....+ .+.+.....++. |+.++.+|++.+. .+..+|-
T Consensus 347 ~~p~~lEIG~G~G~~~~---~~A~-~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~--N~~~~~~~~~~~~~~~~~~sv~~ 420 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFI---NQAK-MNPDALFIGVEVYLNGVANVLKLAGEQNIT--NFLLFPNNLDLILNDLPNNSLDG 420 (506)
T ss_pred CCceEEEECCCchHHHH---HHHH-hCCCCCEEEEEeeHHHHHHHHHHHHHcCCC--eEEEEcCCHHHHHHhcCcccccE
Confidence 46789999999999874 3333 23346999999997654 666666667776 7999999987543 2367888
Q ss_pred EEeccccccCCC-----CC-cHHHHHHHHHhcccCcEEE
Q psy17734 418 MVSELLGSFGDN-----EL-SPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 418 IVSEllgsfg~~-----El-~pe~L~~~~r~LkpgGi~I 450 (626)
|.-...+-+--. .+ .+++++...+.|||||.+-
T Consensus 421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~ 459 (506)
T PRK01544 421 IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLV 459 (506)
T ss_pred EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEE
Confidence 877544433221 12 3889999999999999865
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00068 Score=73.33 Aligned_cols=84 Identities=19% Similarity=0.152 Sum_probs=54.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC------------
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA------------ 411 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~------------ 411 (626)
.|||+-||.|.+++. .|+.+ .+|+|||.++.|+ .|+++...|+.. |++++.++++++..
T Consensus 199 ~vlDlycG~G~fsl~---la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~--n~~f~~~~~~~~~~~~~~~r~~~~~~ 270 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLP---LAKKA---KKVIGVEIVEEAVEDARENAKLNGID--NVEFIRGDAEDFAKALAKAREFNRLK 270 (352)
T ss_dssp EEEEES-TTTCCHHH---HHCCS---SEEEEEES-HHHHHHHHHHHHHTT----SEEEEE--SHHCCCHHCCS-GGTTGG
T ss_pred cEEEEeecCCHHHHH---HHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCC--cceEEEeeccchhHHHHhhHHHHhhh
Confidence 799999999999964 33322 3999999999988 788898899987 79999988766421
Q ss_pred -----CCCccEEEeccccccCCCCCcHHHHHHHH
Q psy17734 412 -----PEKADIMVSELLGSFGDNELSPECLYAAQ 440 (626)
Q Consensus 412 -----p~k~DiIVSEllgsfg~~El~pe~L~~~~ 440 (626)
..++|+||-++.-..++ +.+++.+.
T Consensus 271 ~~~~~~~~~d~vilDPPR~G~~----~~~~~~~~ 300 (352)
T PF05958_consen 271 GIDLKSFKFDAVILDPPRAGLD----EKVIELIK 300 (352)
T ss_dssp GS-GGCTTESEEEE---TT-SC----HHHHHHHH
T ss_pred hhhhhhcCCCEEEEcCCCCCch----HHHHHHHh
Confidence 12689999988754432 45666553
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG2940|consensus | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00025 Score=70.84 Aligned_cols=121 Identities=16% Similarity=0.200 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcE
Q psy17734 320 IRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDV 399 (626)
Q Consensus 320 ~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV 399 (626)
+...++|...+.|++.+-.+ .-..++|+|||.|.+...+.. + |. .+++-+|.+-.++...+....++. .+
T Consensus 52 dylkeeig~rlaDrvfD~kk--~fp~a~diGcs~G~v~rhl~~--e--~v-ekli~~DtS~~M~~s~~~~qdp~i---~~ 121 (325)
T KOG2940|consen 52 DYLKEEIGDRLADRVFDCKK--SFPTAFDIGCSLGAVKRHLRG--E--GV-EKLIMMDTSYDMIKSCRDAQDPSI---ET 121 (325)
T ss_pred hHHHHHHHHHHHHHHHHHhh--hCcceeecccchhhhhHHHHh--c--ch-hheeeeecchHHHHHhhccCCCce---EE
Confidence 44456666666665533222 234699999999999864322 2 22 389999999766644333333443 25
Q ss_pred EEEEecccccCCC-CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 400 TIVSEDMRTWNAP-EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 400 ~vi~~D~~~~~~p-~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
....+|-+.++.. ..+|+|+|.+--++. | ..|-++..+...|||+|.+|-.
T Consensus 122 ~~~v~DEE~Ldf~ens~DLiisSlslHW~-N-dLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 122 SYFVGDEEFLDFKENSVDLIISSLSLHWT-N-DLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred EEEecchhcccccccchhhhhhhhhhhhh-c-cCchHHHHHHHhcCCCccchhH
Confidence 5667787777764 689999996633332 2 3588888888899999998743
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00087 Score=67.05 Aligned_cols=102 Identities=16% Similarity=0.040 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHH-------HHcCCCCCcEEEEEecccccCCC-
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYK-------KEEQWAQSDVTIVSEDMRTWNAP- 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~-------~~n~~~~~nV~vi~~D~~~~~~p- 412 (626)
++.+.+|+|||.|-.+. .|+...++ .+++|||+.+... .+.... +..+.....|+++++|+.+.+..
T Consensus 42 ~~dvF~DlGSG~G~~v~---~aal~~~~-~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~ 117 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVF---QAALQTGC-KKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVK 117 (205)
T ss_dssp TT-EEEEES-TTSHHHH---HHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHH
T ss_pred CCCEEEECCCCCCHHHH---HHHHHcCC-cEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHh
Confidence 56799999999999984 44444565 3799999998654 332211 11222222489999998764321
Q ss_pred ---CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 413 ---EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 413 ---~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
..+|+|+.+-. ...+.+-.-|.....-||+|..+|
T Consensus 118 ~~~s~AdvVf~Nn~---~F~~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 118 DIWSDADVVFVNNT---CFDPDLNLALAELLLELKPGARII 155 (205)
T ss_dssp HHGHC-SEEEE--T---TT-HHHHHHHHHHHTTS-TT-EEE
T ss_pred hhhcCCCEEEEecc---ccCHHHHHHHHHHHhcCCCCCEEE
Confidence 46899987432 111111222333334578888887
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0009 Score=65.64 Aligned_cols=71 Identities=15% Similarity=0.176 Sum_probs=56.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEE
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIM 418 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiI 418 (626)
.-.+++|||+|+|+|.-+..++++++ ..|++.|..|... .+.-+.+.|+. +|.++..|.-. .+..+|++
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA-----~~v~a~d~~P~~~~ai~lNa~angv---~i~~~~~d~~g--~~~~~Dl~ 146 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGA-----AEVVAADIDPWLEQAIRLNAAANGV---SILFTHADLIG--SPPAFDLL 146 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhh-----HHHHhcCCChHHHHHhhcchhhccc---eeEEeeccccC--CCcceeEE
Confidence 34678999999999999977666665 4999999999877 44456667876 49999998877 45789998
Q ss_pred Ee
Q psy17734 419 VS 420 (626)
Q Consensus 419 VS 420 (626)
+.
T Consensus 147 La 148 (218)
T COG3897 147 LA 148 (218)
T ss_pred Ee
Confidence 65
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0024 Score=64.12 Aligned_cols=101 Identities=20% Similarity=0.245 Sum_probs=64.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC----CCCCcc
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN----APEKAD 416 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~----~p~k~D 416 (626)
.++.+||-+|+.+|.-+....... |.+..|||||.+|....-+-.+.+.. . ||--|-+|++.-. +-+++|
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIv---g~~G~VYaVEfs~r~~rdL~~la~~R-~--NIiPIl~DAr~P~~Y~~lv~~VD 145 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIV---GPDGVVYAVEFSPRSMRDLLNLAKKR-P--NIIPILEDARHPEKYRMLVEMVD 145 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHH---TTTSEEEEEESSHHHHHHHHHHHHHS-T--TEEEEES-TTSGGGGTTTS--EE
T ss_pred CCCCEEEEecccCCCccchhhhcc---CCCCcEEEEEecchhHHHHHHHhccC-C--ceeeeeccCCChHHhhccccccc
Confidence 367899999999998876544444 33459999999996542222222221 1 6888889998643 226899
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+|+++..- .+...-+...++.+||+||.++-
T Consensus 146 vI~~DVaQ----p~Qa~I~~~Na~~fLk~gG~~~i 176 (229)
T PF01269_consen 146 VIFQDVAQ----PDQARIAALNARHFLKPGGHLII 176 (229)
T ss_dssp EEEEE-SS----TTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEecCCC----hHHHHHHHHHHHhhccCCcEEEE
Confidence 99997632 22233456778889999998663
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0012 Score=66.42 Aligned_cols=96 Identities=22% Similarity=0.186 Sum_probs=69.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH-HHHHHcCCCCCcEEEEEecccccCCCCC-ccEEEe
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL-KYKKEEQWAQSDVTIVSEDMRTWNAPEK-ADIMVS 420 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~-~~~~~n~~~~~nV~vi~~D~~~~~~p~k-~DiIVS 420 (626)
.++++|||+|-|.=+.-++-+. .+.+|+-+|.+..-+..+ +....-++. ||+++++.++++....+ ||+|+|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~----p~~~vtLles~~Kk~~FL~~~~~eL~L~--nv~i~~~RaE~~~~~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF----PDLKVTLLESLGKKIAFLREVKKELGLE--NVEIVHGRAEEFGQEKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc----cCCcEEEEccCchHHHHHHHHHHHhCCC--CeEEehhhHhhcccccccCcEEEe
Confidence 5799999999997775433222 225899999987655444 444456665 79999999999986445 999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
--+.+ +..+.+-+..++|+||.++
T Consensus 142 RAva~------L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 142 RAVAS------LNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred ehccc------hHHHHHHHHHhcccCCcch
Confidence 65432 3556677788999988765
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00081 Score=62.39 Aligned_cols=60 Identities=18% Similarity=0.134 Sum_probs=45.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN 410 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~ 410 (626)
+|+|+|||.|.++..+++.+ .+.+|+++|.+|.+. .++++...|++. +|++++..+.+-.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~----~~~~v~~~E~~~~~~~~l~~~~~~n~~~--~v~~~~~al~~~~ 61 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG----AEGRVIAFEPLPDAYEILEENVKLNNLP--NVVLLNAAVGDRD 61 (143)
T ss_pred CEEEccCCccHHHHHHHHhC----CCCEEEEEecCHHHHHHHHHHHHHcCCC--cEEEEEeeeeCCC
Confidence 48999999999986544433 224899999999877 566666778775 4999988776533
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG1663|consensus | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.002 Score=64.81 Aligned_cols=113 Identities=18% Similarity=0.097 Sum_probs=82.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-------APE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-------~p~ 413 (626)
..+++||||.=||-=+...+.+.... .+|+|+|.|+.++ .+.+..+..|..++ |++++++.-+.- ...
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~d---Grv~a~eid~~~~~~~~~~~k~agv~~K-I~~i~g~a~esLd~l~~~~~~~ 148 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPED---GRVVAIEIDADAYEIGLELVKLAGVDHK-ITFIEGPALESLDELLADGESG 148 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCC---ceEEEEecChHHHHHhHHHHHhccccce-eeeeecchhhhHHHHHhcCCCC
Confidence 45789999988886655445555443 4999999999776 88888888999999 999999876531 136
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEeccCh
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSH 464 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~ 464 (626)
.||.++-+ .+-++ --..++..-+++|+||+++-+..-... ++..|
T Consensus 149 tfDfaFvD---adK~n--Y~~y~e~~l~Llr~GGvi~~DNvl~~G-~v~~p 193 (237)
T KOG1663|consen 149 TFDFAFVD---ADKDN--YSNYYERLLRLLRVGGVIVVDNVLWPG-VVADP 193 (237)
T ss_pred ceeEEEEc---cchHH--HHHHHHHHHhhcccccEEEEeccccCC-cccCc
Confidence 79998652 11111 124566677899999999988877777 66665
|
|
| >KOG1975|consensus | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.001 Score=69.62 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHH----H-cCCCCCcEEEEEecccccC-----
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKK----E-EQWAQSDVTIVSEDMRTWN----- 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~----~-n~~~~~nV~vi~~D~~~~~----- 410 (626)
++..++|+|||-|.-....-.|+ . .+++++|+.+..+ .+++.-+ . ..+.-. +.++.+|.....
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAg----I-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~-a~f~~~Dc~~~~l~d~~ 190 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAG----I-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFT-AVFIAADCFKERLMDLL 190 (389)
T ss_pred cccccceeccCCcccHhHhhhhc----c-cceEeeehhhccHHHHHHHHHHHHhhhhcccce-eEEEEeccchhHHHHhc
Confidence 45679999999987664434443 3 4999999987554 3332211 1 112223 889999986532
Q ss_pred -CCC-CccEEEeccc-cc-cCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 411 -APE-KADIMVSELL-GS-FGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 411 -~p~-k~DiIVSEll-gs-fg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.+. +||||-|-.. ++ |-..|...-.|..+.+.|||||.+|
T Consensus 191 e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 191 EFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred cCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence 233 4999977442 22 2222223446788899999999987
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0011 Score=63.54 Aligned_cols=76 Identities=7% Similarity=-0.107 Sum_probs=53.1
Q ss_pred EEEeCCHHHH-HHHHHHHHcC--CCCCcEEEEEecccccCCC-CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEE
Q psy17734 374 YAVEKNMSAV-VGLKYKKEEQ--WAQSDVTIVSEDMRTWNAP-EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGIS 449 (626)
Q Consensus 374 ~AVE~np~a~-~a~~~~~~n~--~~~~nV~vi~~D~~~~~~p-~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~ 449 (626)
+|+|.|+.++ ++++.....+ ... +|+++.+|+++++.+ +.||+|++...-.+. +...+++..+.|.|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~-~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~--~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYK-CIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV--VDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCC-ceEEEEechhhCCCCCCCeeEEEecchhhcC--CCHHHHHHHHHHHcCcCeEE
Confidence 4899999877 5554433222 123 499999999999865 589999984321111 22467899999999999998
Q ss_pred Eec
Q psy17734 450 IPY 452 (626)
Q Consensus 450 IP~ 452 (626)
+-.
T Consensus 78 ~i~ 80 (160)
T PLN02232 78 SIL 80 (160)
T ss_pred EEE
Confidence 643
|
|
| >PTZ00372 endonuclease 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.012 Score=64.64 Aligned_cols=198 Identities=15% Similarity=0.142 Sum_probs=130.0
Q ss_pred cCCCeeEEeecCCCCCCHHHHHHHHHhCCccEEEecCCCcccccccccccccccCCCCccccc----CCCCCcCc---cc
Q psy17734 3 QAKIAVSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQS----LSSICPQW---LK 75 (626)
Q Consensus 3 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~df~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~---~~ 75 (626)
++++++.+|-.+.....+..++..|.+.|-+-+-+-+.+||-=. ..|+... +...|..+ ..
T Consensus 126 ~~~~~~~iGaHvSiaGG~~~a~~~a~~~g~~afqiF~~npr~w~------------~~~~~~~~~~~f~~~~~~~gi~~~ 193 (413)
T PTZ00372 126 AEKSNVYIGAHVSASGGVDNSPINAYNIAGQAFALFLKNQRTWN------------SPPLSDETIDKFKENCKKYNYDPK 193 (413)
T ss_pred hhccCceEEEEEeccccHHHHHHHHHHcCCCEEEEEcCCCccCC------------CCCCCHHHHHHHHHHHHHcCCCcc
Confidence 35688999999988889999999999999999999888885211 0121111 11111222 12
Q ss_pred eEEEecCCcccccCCccHHHHHHHHHHHHHHHhhhhhhCCCeEEE-cCC-------CCChhhHHHHHHHHhccCCceEEE
Q psy17734 76 LIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVV-SLD-------QPDFCNFARTLYAHSEKNMSYTAW 147 (626)
Q Consensus 76 ~~v~~~s~w~~~~ds~~~~~~~~s~~~l~~e~~~a~~~g~~~~i~-~~~-------~~~~~~~ar~~~~~~~~~~~~~~~ 147 (626)
.++.-.|-.| .|.|+|+.+|+.|.+.|++||..|..||++.|++ |.. .....++++.|++.+.....+.
T Consensus 194 ~i~~HapYlI-NLASpd~e~rekSv~~~~~eL~rA~~LGa~~VV~HPGs~~~~~~~ee~i~~i~e~L~~~la~~~gV~-- 270 (413)
T PTZ00372 194 FILPHGSYLI-NLANPDKEKREKSYDAFLDDLQRCEQLGIKLYNFHPGSTVGQCSKEEGIKNIADCINKAHEETKSVI-- 270 (413)
T ss_pred eEEeecCcee-cCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCHHHHHHHHHHHHHHHHhCcCCCE--
Confidence 3555566568 9999999999999999999999999999999999 432 1134567888888764333333
Q ss_pred EEeeccCCCccccccCCCCCCccchHHHHHHHHHhcCCCCceEEEEEec------CCCCCHhHHhHhh-------c-ccc
Q psy17734 148 IKVPIRPVDTSMLRQQEEEPSSQDTWRWWNMFRSVTNYHSKFELALEIN------GDICDDHELTRWL-------G-EPL 213 (626)
Q Consensus 148 i~~p~~~~~~~~~~~~~~~~~~~~~w~~W~~~r~~c~~~~~l~v~L~l~------~~~p~~~~~~rW~-------~-EPv 213 (626)
|-|--... ....-..+.+--..|...++..++++|+|+.. .++-+.+-++.|+ | +-|
T Consensus 271 IlLENmag---------~g~~lG~~~eeL~~Iid~v~~~~rlGvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL 341 (413)
T PTZ00372 271 IVLENTAG---------QKNSVGSKFEDLRDIIALVEDKSRVGVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYL 341 (413)
T ss_pred EEEecCCC---------CCCcccCCHHHHHHHHHhcCCcCCeEEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhhe
Confidence 33322110 00011135555666666777778999999987 3444433333333 3 668
Q ss_pred eEEEecccccc
Q psy17734 214 RCVFIPTHVFQ 224 (626)
Q Consensus 214 ~~~~i~~~~f~ 224 (626)
+++-++-|-.-
T Consensus 342 ~~vHLNDSk~~ 352 (413)
T PTZ00372 342 KAVHLNDSKSD 352 (413)
T ss_pred eEEEEEcCCCc
Confidence 88888776653
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00055 Score=68.51 Aligned_cols=104 Identities=15% Similarity=0.096 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
+..+.||.|||-|..+.-++. ... .+|-.||.++.-. .|.+.+. .+-... .++++.-+.+|.++ .++|+|-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl--~~f---~~VDlVEp~~~Fl~~a~~~l~-~~~~~v-~~~~~~gLQ~f~P~~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLL--PVF---DEVDLVEPVEKFLEQAKEYLG-KDNPRV-GEFYCVGLQDFTPEEGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCC--CC----SEEEEEES-HHHHHHHHHHTC-CGGCCE-EEEEES-GGG----TT-EEEEE
T ss_pred CcceEEecccccchhHHHHHH--Hhc---CEeEEeccCHHHHHHHHHHhc-ccCCCc-ceEEecCHhhccCCCCcEeEEE
Confidence 457899999999999853321 111 3999999998766 4443332 222233 78899999999875 6999999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.-|.-..+..+..-++|..+...|+|+|+++--
T Consensus 128 ~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 128 IQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp EES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 988644444444567888899999999987643
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0034 Score=65.24 Aligned_cols=136 Identities=20% Similarity=0.248 Sum_probs=85.5
Q ss_pred HhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCc--h--HHHHHHHHHhh-cCCccEEEEEeCCHHHH-H
Q psy17734 311 VFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRG--P--LVTASLNAAKE-ANRKVRVYAVEKNMSAV-V 384 (626)
Q Consensus 311 ~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG--~--Ls~~al~Aa~~-~g~~~~V~AVE~np~a~-~ 384 (626)
.|-.|+...+..++.+...+..... . +..+|+-+||+|| | +++.+.++... .+..++|+|.|++..++ .
T Consensus 70 ~FFR~~~~f~~l~~~v~p~l~~~~~----~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~ 144 (268)
T COG1352 70 EFFRDPEHFEELRDEVLPELVKRKK----G-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEK 144 (268)
T ss_pred hhccCcHHHHHHHHHHHHHHHhhcc----C-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHH
Confidence 4778888777777766665543211 1 3579999999999 3 44444444422 12358999999998765 3
Q ss_pred HHHH------H---------HH------cC-C------CCCcEEEEEecccccC-CCCCccEEEe-ccccccCCCCCcHH
Q psy17734 385 GLKY------K---------KE------EQ-W------AQSDVTIVSEDMRTWN-APEKADIMVS-ELLGSFGDNELSPE 434 (626)
Q Consensus 385 a~~~------~---------~~------n~-~------~~~nV~vi~~D~~~~~-~p~k~DiIVS-Ellgsfg~~El~pe 434 (626)
|++- . .+ .+ | .. .|++-..|+-+-. .+.++|+|+| +.|.+| +.+.-.+
T Consensus 145 A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~-~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF-d~~~q~~ 222 (268)
T COG1352 145 ARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRK-MVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF-DEETQER 222 (268)
T ss_pred HhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhc-ccEEeecCCCCCccccCCCCEEEEcceEEee-CHHHHHH
Confidence 3221 1 00 01 1 11 3555555654433 5578999999 666555 4454567
Q ss_pred HHHHHHHhcccCcEEEecc
Q psy17734 435 CLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 435 ~L~~~~r~LkpgGi~IP~~ 453 (626)
++......|+|||.++--.
T Consensus 223 il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 223 ILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred HHHHHHHHhCCCCEEEEcc
Confidence 8888889999999977443
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00016 Score=63.88 Aligned_cols=102 Identities=17% Similarity=0.154 Sum_probs=41.3
Q ss_pred EEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc--CCC-CCccEEEeccc
Q psy17734 347 MVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW--NAP-EKADIMVSELL 423 (626)
Q Consensus 347 LDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~--~~p-~k~DiIVSEll 423 (626)
|++|+..|.-+...+.+.+..+. .++++||..+....+.+.+++.+..++ +++++++..+. ..+ +++|+++-.--
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~-~~~~~vD~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGR-GKLYSVDPFPGDEQAQEIIKKAGLSDR-VEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp ---------------------------EEEESS------------GGG-BT-EEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred Ccccccccccccccccccccccc-CCEEEEECCCcccccchhhhhcCCCCe-EEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 58998888887776777665442 489999999853233344444566666 99999999875 223 78999976432
Q ss_pred cccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 424 GSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 424 gsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
.. .+.....+..+.+.|+|||+++-+.
T Consensus 79 H~---~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HS---YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC---HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 11 1223445666778899999998654
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0012 Score=69.69 Aligned_cols=74 Identities=20% Similarity=0.179 Sum_probs=55.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCC---Cc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APE---KA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~---k~ 415 (626)
++.+++|++||.|..+..++.+. +.+.+|+|+|.++.|+ .+.+.+.. .++ ++++++|..++. .++ ++
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~---~~~g~VigiD~D~~al~~ak~~L~~---~~r-i~~i~~~f~~l~~~l~~~~~~v 91 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERL---GPKGRLIAIDRDPDAIAAAKDRLKP---FGR-FTLVHGNFSNLKEVLAEGLGKV 91 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhC---CCCCEEEEEcCCHHHHHHHHHhhcc---CCc-EEEEeCCHHHHHHHHHcCCCcc
Confidence 45699999999999997665543 2225999999999888 44444322 455 999999999864 222 79
Q ss_pred cEEEecc
Q psy17734 416 DIMVSEL 422 (626)
Q Consensus 416 DiIVSEl 422 (626)
|.|+.++
T Consensus 92 DgIl~DL 98 (296)
T PRK00050 92 DGILLDL 98 (296)
T ss_pred CEEEECC
Confidence 9998865
|
|
| >KOG2915|consensus | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0046 Score=63.55 Aligned_cols=97 Identities=25% Similarity=0.269 Sum_probs=73.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHH-HHHHHHHHHHcCCCCCcEEEEEecccccCC---CCCcc
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMS-AVVGLKYKKEEQWAQSDVTIVSEDMRTWNA---PEKAD 416 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~-a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~---p~k~D 416 (626)
.++.+|++.|+|+|.++.+.++|.+-.| +++..|.... +..+++..+..+|++. |++++.|+..-.. ..++|
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptG---hl~tfefH~~Ra~ka~eeFr~hgi~~~-vt~~hrDVc~~GF~~ks~~aD 179 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTG---HLYTFEFHETRAEKALEEFREHGIGDN-VTVTHRDVCGSGFLIKSLKAD 179 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCc---ceEEEEecHHHHHHHHHHHHHhCCCcc-eEEEEeecccCCccccccccc
Confidence 3789999999999999988777776444 9999999874 5588888888999886 9999999877544 35799
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcE
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGI 448 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi 448 (626)
.|.-+++-- -+.+-.+.+.||.+|.
T Consensus 180 aVFLDlPaP-------w~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 180 AVFLDLPAP-------WEAIPHAAKILKDEGG 204 (314)
T ss_pred eEEEcCCCh-------hhhhhhhHHHhhhcCc
Confidence 997766432 1233334457887765
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0019 Score=68.84 Aligned_cols=109 Identities=14% Similarity=0.136 Sum_probs=71.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMV 419 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIV 419 (626)
.++.++||+||++|.++..+++. | .+|+|||..+++.. +.. .. +|+.+.+|...+.. ++++|++|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r----G--~~V~AVD~g~l~~~----L~~---~~-~V~h~~~d~fr~~p~~~~vDwvV 275 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR----G--MFVTAVDNGPMAQS----LMD---TG-QVEHLRADGFKFRPPRKNVDWLV 275 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc----C--CEEEEEechhcCHh----hhC---CC-CEEEEeccCcccCCCCCCCCEEE
Confidence 36789999999999999765543 3 39999997764432 111 23 49999999887765 67899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEeccChHhHHHHhhh
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSS 473 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l~~~~~~~ 473 (626)
|+.. |.-..+..-+.++|..| .++..++--=+.-.+-|+++..+
T Consensus 276 cDmv------e~P~rva~lm~~Wl~~g----~cr~aIfnLKlpmk~r~~~v~~~ 319 (357)
T PRK11760 276 CDMV------EKPARVAELMAQWLVNG----WCREAIFNLKLPMKKRYEEVRQC 319 (357)
T ss_pred Eecc------cCHHHHHHHHHHHHhcC----cccEEEEEEEcCCCCCHHHHHHH
Confidence 9764 33234556667788665 22333333333334456655543
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0018 Score=69.01 Aligned_cols=101 Identities=18% Similarity=0.159 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEe-cccccCCCCC-ccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSE-DMRTWNAPEK-ADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~-D~~~~~~p~k-~DiI 418 (626)
++..|||=-||||.+.. .|+ ..| .+|+|+|.+..++ -++.++...+.. +..++.. |+++++++++ +|.|
T Consensus 197 ~G~~vlDPFcGTGgiLi---Eag-l~G--~~viG~Did~~mv~gak~Nl~~y~i~--~~~~~~~~Da~~lpl~~~~vdaI 268 (347)
T COG1041 197 RGELVLDPFCGTGGILI---EAG-LMG--ARVIGSDIDERMVRGAKINLEYYGIE--DYPVLKVLDATNLPLRDNSVDAI 268 (347)
T ss_pred cCCEeecCcCCccHHHH---hhh-hcC--ceEeecchHHHHHhhhhhhhhhhCcC--ceeEEEecccccCCCCCCccceE
Confidence 67799999999999874 444 356 4999999998665 778888776654 3777776 9999999865 9999
Q ss_pred Eeccc-cccCC------CCCcHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELL-GSFGD------NELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEll-gsfg~------~El~pe~L~~~~r~LkpgGi~I 450 (626)
++++. |--.. .++..+.|+.+.+.||+||.++
T Consensus 269 atDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~v 307 (347)
T COG1041 269 ATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIV 307 (347)
T ss_pred EecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEE
Confidence 99984 21111 1223457778889999999654
|
|
| >KOG1709|consensus | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0078 Score=59.95 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=67.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCC-cEEEEEecccccC--C-CCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQS-DVTIVSEDMRTWN--A-PEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~-nV~vi~~D~~~~~--~-p~k~Di 417 (626)
++.+||.||-|.|+...+ ++.+. . .+=+-||.+|... +.++.++|.++ ||.++.+.-++.- + .+.||-
T Consensus 101 kggrvLnVGFGMgIidT~-iQe~~---p-~~H~IiE~hp~V~---krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDG 172 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTF-IQEAP---P-DEHWIIEAHPDVL---KRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDG 172 (271)
T ss_pred CCceEEEeccchHHHHHH-HhhcC---C-cceEEEecCHHHH---HHHHhcccccccceEEEecchHhhhccccccCcce
Confidence 678999999999998754 33332 2 4667899999655 44556888755 6888888777653 2 367999
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|.-+..+ -..|..-++.+.+-|+|||+|++-
T Consensus 173 I~yDTy~--e~yEdl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 173 IYYDTYS--ELYEDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred eEeechh--hHHHHHHHHHHHHhhhcCCCceEE
Confidence 8764431 011223345567778999999874
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0088 Score=62.22 Aligned_cols=116 Identities=21% Similarity=0.232 Sum_probs=72.3
Q ss_pred HHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCC-CCC-------
Q psy17734 326 VQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQW-AQS------- 397 (626)
Q Consensus 326 I~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~-~~~------- 397 (626)
|..++.+..+.........+||+=|||.|.|+-. .|++ | ..|.|.|.|-.|.++-+.+....- .+.
T Consensus 40 I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~E---ia~~-G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~ 113 (270)
T PF07942_consen 40 ILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWE---IAKL-G--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFV 113 (270)
T ss_pred HHHHHHHhhcccccCCCccEEEEcCCCcchHHHH---Hhhc-c--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecce
Confidence 3344444443222234567899999999999854 4442 4 599999999877655444321100 010
Q ss_pred -------------------------------cEEEEEecccccCCC----CCccEEEeccccccCCC-CCcHHHHHHHHH
Q psy17734 398 -------------------------------DVTIVSEDMRTWNAP----EKADIMVSELLGSFGDN-ELSPECLYAAQK 441 (626)
Q Consensus 398 -------------------------------nV~vi~~D~~~~~~p----~k~DiIVSEllgsfg~~-El~pe~L~~~~r 441 (626)
++....||..++-.+ +++|.||+- +|.|- +.+-+.++.+.+
T Consensus 114 ~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~ 190 (270)
T PF07942_consen 114 HSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC---FFIDTAENIIEYIETIEH 190 (270)
T ss_pred ecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE---EEeechHHHHHHHHHHHH
Confidence 244444555554333 489999885 45543 335778899999
Q ss_pred hcccCcEEE
Q psy17734 442 YLKEDGISI 450 (626)
Q Consensus 442 ~LkpgGi~I 450 (626)
.|||||+-|
T Consensus 191 lLkpgG~WI 199 (270)
T PF07942_consen 191 LLKPGGYWI 199 (270)
T ss_pred HhccCCEEE
Confidence 999999866
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.006 Score=63.79 Aligned_cols=86 Identities=14% Similarity=0.134 Sum_probs=46.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEE
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIM 418 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiI 418 (626)
++...+|||+|||.|.-..++... .+...++++||.|+.+. .++... ...-..++.........+...-.+.|+|
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~---~~~~~~~~~vd~s~~~~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~DLv 106 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREV---WPSLKEYTCVDRSPEMLELAKRLL-RAGPNNRNAEWRRVLYRDFLPFPPDDLV 106 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHH---hcCceeeeeecCCHHHHHHHHHHH-hcccccccchhhhhhhcccccCCCCcEE
Confidence 456789999999999755332222 22225899999999877 444433 3221111111111111111111344999
Q ss_pred EeccccccCCCCCcH
Q psy17734 419 VSELLGSFGDNELSP 433 (626)
Q Consensus 419 VSEllgsfg~~El~p 433 (626)
|+ ++..+|+..
T Consensus 107 i~----s~~L~EL~~ 117 (274)
T PF09243_consen 107 IA----SYVLNELPS 117 (274)
T ss_pred EE----ehhhhcCCc
Confidence 88 566667643
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0065 Score=65.85 Aligned_cols=120 Identities=20% Similarity=0.166 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC----CCCc
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA----PEKA 415 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~----p~k~ 415 (626)
.++.+|||+.|+.|.=+..++++...-| ..|+|+|.++.-. ....++++-|.. ||.+++.|.+.... .++|
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~--~iV~A~D~~~~Rl~~l~~nl~RlG~~--nv~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEG--AIVVAVDVSPKRLKRLRENLKRLGVR--NVIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCC--ceEEEEcCCHHHHHHHHHHHHHcCCC--ceEEEecccccccccccccCcC
Confidence 4678999999999988866555554323 4789999998654 666777777776 68899999876532 1369
Q ss_pred cEEEeccccc----cCCC-CC---------------cHHHHHHHHHhcccCcEEEeccceeeEEeccChHh
Q psy17734 416 DIMVSELLGS----FGDN-EL---------------SPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKL 466 (626)
Q Consensus 416 DiIVSEllgs----fg~~-El---------------~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l 466 (626)
|.|+.+-.-| +--+ +. ..++|+++.++|||||+++=+.||+ .|.+-...
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~--~~eENE~v 299 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL--TPEENEEV 299 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC--chhcCHHH
Confidence 9998865422 2100 00 1357888889999999999776654 44555443
|
|
| >KOG1541|consensus | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0028 Score=63.29 Aligned_cols=100 Identities=16% Similarity=0.121 Sum_probs=64.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccc-cCC-CCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRT-WNA-PEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~-~~~-p~k~DiI 418 (626)
+..-|||||||+|.-+.. ....| ...++||+||.+. ++.+. ..+ =.++.+||-+ +++ |+.||-+
T Consensus 50 ~~~~iLDIGCGsGLSg~v----L~~~G--h~wiGvDiSpsML~~a~~~----e~e---gdlil~DMG~GlpfrpGtFDg~ 116 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSV----LSDSG--HQWIGVDISPSMLEQAVER----ELE---GDLILCDMGEGLPFRPGTFDGV 116 (270)
T ss_pred CCcEEEEeccCCCcchhe----eccCC--ceEEeecCCHHHHHHHHHh----hhh---cCeeeeecCCCCCCCCCccceE
Confidence 456899999999988742 22233 5899999999776 55542 122 2378889875 343 4789998
Q ss_pred EeccccccCCCCC----cHH-----HHHHHHHhcccCcEEEeccc
Q psy17734 419 VSELLGSFGDNEL----SPE-----CLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 419 VSEllgsfg~~El----~pe-----~L~~~~r~LkpgGi~IP~~~ 454 (626)
||--.-.+++|-. -|. ++......|++|+..+-|-|
T Consensus 117 ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 117 ISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred EEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 8733224444432 122 23446677999998887654
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0046 Score=61.60 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=71.9
Q ss_pred HHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEE
Q psy17734 324 EAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIV 402 (626)
Q Consensus 324 ~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi 402 (626)
..|.+.+...++. .+..||+||+|||--+...+.+.. . .+-.--|.++... -....+...+..+. ..-+
T Consensus 12 ~pIl~vL~~~l~~-----~~~~vLEiaSGtGqHa~~FA~~lP--~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv-~~P~ 81 (204)
T PF06080_consen 12 DPILEVLKQYLPD-----SGTRVLEIASGTGQHAVYFAQALP--H--LTWQPSDPDDNLRPSIRAWIAEAGLPNV-RPPL 81 (204)
T ss_pred hHHHHHHHHHhCc-----cCceEEEEcCCccHHHHHHHHHCC--C--CEEcCCCCChHHHhhHHHHHHhcCCccc-CCCe
Confidence 4556666554432 233699999999999865444332 2 4556677777664 33344444555432 2234
Q ss_pred Eeccccc--C-------CCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 403 SEDMRTW--N-------APEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 403 ~~D~~~~--~-------~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.-|+.+- . .++.+|.|++-=|-++...+....++.++.+.|++||.++-.
T Consensus 82 ~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 82 ALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred EeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 4455432 2 135899999844444444444455778889999999998844
|
The function of this family is unknown. |
| >KOG1501|consensus | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0055 Score=66.44 Aligned_cols=190 Identities=12% Similarity=-0.015 Sum_probs=118.4
Q ss_pred cEEEEEecccccCCCCCccEEEeccccccCCC---CC-cHHHHHHHHHhcccCcEEEeccceeeEEeccChHhHHHHhhh
Q psy17734 398 DVTIVSEDMRTWNAPEKADIMVSELLGSFGDN---EL-SPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSS 473 (626)
Q Consensus 398 nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~---El-~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l~~~~~~~ 473 (626)
|++.+..=|. .+.+.|++..|..-.-..+ .+ .--........+-|+-.+.|+.+.+.+.|....+|++....+
T Consensus 416 n~e~vp~i~t---~~ds~~ivl~epf~~tam~PW~~L~F~Y~~~~l~~~~G~~~~V~P~~~~L~Ai~~kF~DL~~I~S~~ 492 (636)
T KOG1501|consen 416 NNESVPAIMT---SPDSPDIVLAEPFVKTAMNPWNHLRFLYDVEVLKMMHGDELRVEPHMGVLKAIPEKFEDLQNIASDV 492 (636)
T ss_pred ccccchhhhc---CCCCCceeecchhhhhccCchhheeeeeeHHHHHHhcCCceeeccccchhhhhhHHHHHHHhhcccc
Confidence 4555544333 2345688888874211111 11 000123345567899999999999999999999999976655
Q ss_pred ccc--cCCCcc-------cC------CCCcEEEEecCccccCCCeeEEEeeCCCCCCCCCCceeeEEEEEEeeCceEEEE
Q psy17734 474 MIK--EHQHPL-------YR------FEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGI 538 (626)
Q Consensus 474 ~~~--fd~~~~-------~~------~e~P~vv~l~~~~~Ls~p~~~~tFd~p~~~~~~~~~r~~~~~f~i~~~g~~hGf 538 (626)
... ||.+.. .. -|+|. +..+...+++|.++.+|++..+.. .....+.+.+.|.-|++
T Consensus 493 G~~~GFDl~~~Dei~~kA~~~~da~~~E~~L--WEY~~~~~~d~~eIL~F~~~~~V~------~Qk~~V~i~~~~sS~A~ 564 (636)
T KOG1501|consen 493 GTVNGFDLSFFDEISTKARTATDAIVDEQSL--WEYAGIVKGDAVEILRFPIDGRVS------SQKCVVNIDNMSSSNAI 564 (636)
T ss_pred cccccceeeehhHHHHhhchhhhhhhccchh--hhccCeecCCceeEEEeccCCccc------cceeEEEccCCCccccc
Confidence 432 443210 01 12232 344677889999999999876521 22677889999999999
Q ss_pred EEEEEEEecCceEEecCCC-----CCCCCCccceeEEEecCCceeeCCCCEEEEEEEEEecCceEEEE
Q psy17734 539 AGYFDTFLYKDINLSIHPD-----TLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNVKVWYE 601 (626)
Q Consensus 539 ~~wFd~~L~~~v~lSt~P~-----t~s~~m~sW~q~~fpL~~Pi~V~~Gd~i~v~~~R~~d~~~VWyE 601 (626)
..|++.+|. ++.|||+-- .-....-+.+|.+++... .+.-+-++.++.-...+...+=++
T Consensus 565 ~mWME~~~~-~~nLSTGLL~~~~~G~~~WN~~~KQ~VYF~~t--~L~~~ksl~~~~~F~~~TGDI~~q 629 (636)
T KOG1501|consen 565 PMWMEWEFG-GINLSTGLLSISSAGVPEWNKGYKQGVYFPIT--ALRNDKSLCLHALFDKSTGDINFQ 629 (636)
T ss_pred eeeEEeeeC-ceeecccceeecCCCCcccCccccceeEEEhH--HhCCCceEEEEEEEcCCCCceEEE
Confidence 999999998 788888742 211112346788876432 233445677776655555555444
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0031 Score=63.16 Aligned_cols=104 Identities=19% Similarity=0.153 Sum_probs=67.5
Q ss_pred EEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccc-cCCCCCccEEEeccc
Q psy17734 346 IMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRT-WNAPEKADIMVSELL 423 (626)
Q Consensus 346 VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~-~~~p~k~DiIVSEll 423 (626)
|.||||--|.|+..+++.+. + .+|+|+|+++.-. .|+++++..++.++ |+++.+|--+ ++..+.+|.||---|
T Consensus 1 vaDIGtDHgyLpi~L~~~~~---~-~~~ia~DI~~gpL~~A~~~i~~~~l~~~-i~~rlgdGL~~l~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK---A-PKAIAVDINPGPLEKAKENIAKYGLEDR-IEVRLGDGLEVLKPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS---E-EEEEEEESSHHHHHHHHHHHHHTT-TTT-EEEEE-SGGGG--GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCC---C-CEEEEEeCCHHHHHHHHHHHHHcCCccc-EEEEECCcccccCCCCCCCEEEEecC
Confidence 68999999999976655443 2 4899999999766 88888889999998 9999999654 444344898877555
Q ss_pred cccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEeccChH
Q psy17734 424 GSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHK 465 (626)
Q Consensus 424 gsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~ 465 (626)
| .+++-++|++....++ +....-++|.....
T Consensus 76 G----G~lI~~ILe~~~~~~~-------~~~~lILqP~~~~~ 106 (205)
T PF04816_consen 76 G----GELIIEILEAGPEKLS-------SAKRLILQPNTHAY 106 (205)
T ss_dssp -----HHHHHHHHHHTGGGGT-------T--EEEEEESS-HH
T ss_pred C----HHHHHHHHHhhHHHhc-------cCCeEEEeCCCChH
Confidence 4 3456667776544443 22345578887764
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.025 Score=60.35 Aligned_cols=106 Identities=16% Similarity=0.102 Sum_probs=71.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEE--EEeccccc----CC---
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTI--VSEDMRTW----NA--- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~v--i~~D~~~~----~~--- 411 (626)
++.+++|+|||.|.=+..++.+....+...+.++||+|..+. .+.+.+....+. +|++ +.+|..+. ..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p--~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS--HVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC--CeEEEEEEecHHHHHhhcccccc
Confidence 456899999999988888788876555456899999998766 555555423443 2555 88888653 21
Q ss_pred CCCccEEEeccccccCCCCCc---HHHHHHHHH-hcccCcEEEe
Q psy17734 412 PEKADIMVSELLGSFGDNELS---PECLYAAQK-YLKEDGISIP 451 (626)
Q Consensus 412 p~k~DiIVSEllgsfg~~El~---pe~L~~~~r-~LkpgGi~IP 451 (626)
+....+++. +||-..|-.- ..+|..+.+ .|+|||.++-
T Consensus 154 ~~~~r~~~f--lGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 154 RSRPTTILW--LGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred cCCccEEEE--eCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 233566655 7754444332 346778888 8999988663
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG2187|consensus | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.00087 Score=74.15 Aligned_cols=60 Identities=23% Similarity=0.215 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW 409 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~ 409 (626)
.++.++|+-||||.++.. .++.. .+|++||.+|.++ -|+++++.||.. |.+++.|..+++
T Consensus 383 ~~k~llDv~CGTG~igla---la~~~---~~ViGvEi~~~aV~dA~~nA~~Ngis--Na~Fi~gqaE~~ 443 (534)
T KOG2187|consen 383 ADKTLLDVCCGTGTIGLA---LARGV---KRVIGVEISPDAVEDAEKNAQINGIS--NATFIVGQAEDL 443 (534)
T ss_pred CCcEEEEEeecCCceehh---hhccc---cceeeeecChhhcchhhhcchhcCcc--ceeeeecchhhc
Confidence 568999999999999953 23322 4999999999988 889999999998 899999976664
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.009 Score=64.64 Aligned_cols=81 Identities=10% Similarity=0.161 Sum_probs=65.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcC----------------------------------Ccc-EEEEEeCCHHHH-HH
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEAN----------------------------------RKV-RVYAVEKNMSAV-VG 385 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g----------------------------------~~~-~V~AVE~np~a~-~a 385 (626)
++..++|==||+|.+...++..+.... .+. .++|+|+++.++ .|
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 345799999999999877666553110 001 377999999887 88
Q ss_pred HHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEeccc
Q psy17734 386 LKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELL 423 (626)
Q Consensus 386 ~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSEll 423 (626)
+.+..+.|..+. |++.++|++++..+ +.+|+|||++.
T Consensus 271 k~NA~~AGv~d~-I~f~~~d~~~l~~~~~~~gvvI~NPP 308 (381)
T COG0116 271 KANARAAGVGDL-IEFKQADATDLKEPLEEYGVVISNPP 308 (381)
T ss_pred HHHHHhcCCCce-EEEEEcchhhCCCCCCcCCEEEeCCC
Confidence 888889999999 99999999999887 89999999986
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.024 Score=49.74 Aligned_cols=102 Identities=18% Similarity=0.162 Sum_probs=62.5
Q ss_pred EEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccc--cCCCC--CccEEEec
Q psy17734 346 IMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT--WNAPE--KADIMVSE 421 (626)
Q Consensus 346 VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~--~~~p~--k~DiIVSE 421 (626)
++|+|||+|... .+..... ....++++|.++.+....+.......... +.++.+|... ..... .+|++.+.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG---RGAYVVGVDLSPEMLALARARAEGAGLGL-VDFVVADALGGVLPFEDSASFDLVISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC---CCceEEEEeCCHHHHHHHHhhhhhcCCCc-eEEEEeccccCCCCCCCCCceeEEeee
Confidence 999999999865 1122221 11389999999876644222221121111 6788888776 55543 79999443
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEEeccce
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
....... ....+..+.+.|+|+|.++-....
T Consensus 127 ~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 127 LVLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred eehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 3322221 456778888999999987765443
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0073 Score=63.83 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=65.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhh---cCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKE---ANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA---PEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~---~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~---p~k 414 (626)
++.+|+|-.||+|.+...+++.... ...+.+++|+|.++.+. ++..++.-.+....+..+..+|.-.... ..+
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~ 125 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQK 125 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 5668999999999998665543210 01236999999999876 5555444445443335688888754433 368
Q ss_pred ccEEEeccc-ccc--CCCC--------------CcH--HHHHHHHHhcccCcE---EEecc
Q psy17734 415 ADIMVSELL-GSF--GDNE--------------LSP--ECLYAAQKYLKEDGI---SIPYN 453 (626)
Q Consensus 415 ~DiIVSEll-gsf--g~~E--------------l~p--e~L~~~~r~LkpgGi---~IP~~ 453 (626)
||+||+++. |.. ...+ .-. .++..+.+.||+||. ++|.+
T Consensus 126 ~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 126 FDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred cccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 999999874 222 1100 011 245667788999985 55543
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.43 Score=49.99 Aligned_cols=237 Identities=12% Similarity=0.155 Sum_probs=150.5
Q ss_pred EEeecCCCCC--CHHHHHHHHHhCCccEEEecCCCcc-cccccccccccccCCCCccccc-CCCCCcCccceEEEecCCc
Q psy17734 9 SVGLEYPTCY--NIQSQIESLAAECFDYAVLPLVHPR-FARHKDVDRYRVFGLPEAQVQS-LSSICPQWLKLIVCDIQCK 84 (626)
Q Consensus 9 ~~g~~~~~~~--~~~~~~~~~~~~~~df~~~pi~~~~-~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~v~~~s~w 84 (626)
.+|-...... ++..++..+.+.|.|-+-+...+|+ +.+.-... + ... ....|.+ ...++.-.|-.
T Consensus 3 ~~G~h~s~~~~~~~~~~~~~a~~iG~na~~if~~~~~~~~~~~~~~--~--------~~~~~~~~~~~-~~~i~vHApYl 71 (280)
T COG0648 3 LFGAHGSPAGGKSLVNAVERAREIGLNAFEIFLVNPRVWISPPLAE--D--------AIELFKAALKD-DVQLSVHAPYL 71 (280)
T ss_pred eEeeeecCCCchhHHHHHHHHHHcCCCEEEEEecCcccccCCCchH--H--------HHHHHHHhhcc-CceEEeeccee
Confidence 4555444333 4899999999999999999999983 33221000 0 011 0011122 35556677778
Q ss_pred ccccCCccHHHHHHHHHHHHHHHhhhhhhCCCeEEEcC----CC---CChhhHHHHHHHHhccCCceEEEEEeeccCCCc
Q psy17734 85 LKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSL----DQ---PDFCNFARTLYAHSEKNMSYTAWIKVPIRPVDT 157 (626)
Q Consensus 85 ~~~~ds~~~~~~~~s~~~l~~e~~~a~~~g~~~~i~~~----~~---~~~~~~ar~~~~~~~~~~~~~~~i~~p~~~~~~ 157 (626)
| +|.|+++.+++.|.+.|.+|+.-+..+|+..|++-| .. ..+.+++..|++.+.. .. +.+-++.+...
T Consensus 72 I-Nl~s~~~e~~ekS~~~l~~e~~r~~~lG~~~lv~HpG~~~~~~~e~~l~~i~~~Ln~~~~~-~~--v~i~~e~~age- 146 (280)
T COG0648 72 I-NLASPEKEKVEKSIERLIDEIDRCEQLGAKLLVFHPGSYLGQGKEEGLNRIAEALNELLEE-EG--VIILLENTAGE- 146 (280)
T ss_pred e-cCCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEECCccccCCCHHHHHHHHHHHHHHHhhc-cC--CeEEEEEeccc-
Confidence 8 999999999999999999999999999999999943 11 2456788889887753 22 56666666441
Q ss_pred cccccCCCCCCccchHHHHHHHHHhcCCCCceEEEEEec------CCCCCH----hHHhH---hhcc-cceEEEeccccc
Q psy17734 158 SMLRQQEEEPSSQDTWRWWNMFRSVTNYHSKFELALEIN------GDICDD----HELTR---WLGE-PLRCVFIPTHVF 223 (626)
Q Consensus 158 ~~~~~~~~~~~~~~~w~~W~~~r~~c~~~~~l~v~L~l~------~~~p~~----~~~~r---W~~E-Pv~~~~i~~~~f 223 (626)
.+......+.=..+..+|.-..+++|+|+-. .++-.. +++++ =+|- =++++-++-+-+
T Consensus 147 --------gs~~g~~F~~L~eii~~~~~~~~igvCiDtcH~~Aagy~~~~~~~~~~vl~~~d~~~G~~~~~~~Hlndsk~ 218 (280)
T COG0648 147 --------GSGKGTQFGELAEIIDLIEEKERIGVCIDTCHAFAAGYDIITEEDFEKVLNEFDKVLGLEYLKHIHLNDSKY 218 (280)
T ss_pred --------cCccccchhhHHHHHHhhcccCceEEEEEchhhhhccCCcCcHHHHHHHHHHHHHHhChhhheeEeecCccc
Confidence 1112234555556667888889999999876 355552 44444 4664 889999999998
Q ss_pred ccCC---------CCCccCCHhHHHHHHHHHHhcceEEEEcccCCCChhhHHHHHHHHHh
Q psy17734 224 QTNK---------AGYPVLNASLANFIKKILEKNLQVVIQGVNRHQSYLHYVQYMQYLKK 274 (626)
Q Consensus 224 ~~n~---------~g~pvL~k~~q~~i~~~~~~~~~~~l~~~~~~~~~~~y~~yl~~l~~ 274 (626)
-... .|+.=. +....++....=.++++|+... .+..|.++|++|.+
T Consensus 219 ~~G~~kDRH~~ig~G~ig~-e~l~~~~~d~~~~~iPiIlETP----~~e~~a~ei~~l~~ 273 (280)
T COG0648 219 PLGSNKDRHENIGEGYIGF-EALRKILKDFRIDGIPIILETP----NLEGDAEEIKKLRE 273 (280)
T ss_pred ccccccccccccCCCCCCh-HHHHHHHhcccccCCeEEEeCC----CccccHHHHHHHHH
Confidence 5433 244322 2222333332223355677653 24556777777764
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.018 Score=59.01 Aligned_cols=73 Identities=14% Similarity=0.098 Sum_probs=53.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH-------cCC-CCCcEEEEEecccccC--CCC
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE-------EQW-AQSDVTIVSEDMRTWN--APE 413 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~-------n~~-~~~nV~vi~~D~~~~~--~p~ 413 (626)
+|||+-||+|..+. .++.. |+ +|++||.||.+. .....+++ ..| ..+ ++++++|..++- .+.
T Consensus 91 ~VLD~TAGlG~Da~---~las~-G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~r-i~l~~~da~~~L~~~~~ 163 (250)
T PRK10742 91 DVVDATAGLGRDAF---VLASV-GC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQER-LQLIHASSLTALTDITP 163 (250)
T ss_pred EEEECCCCccHHHH---HHHHc-CC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhce-EEEEeCcHHHHHhhCCC
Confidence 89999999999995 44443 53 799999999765 44444433 122 244 999999998863 345
Q ss_pred CccEEEecccc
Q psy17734 414 KADIMVSELLG 424 (626)
Q Consensus 414 k~DiIVSEllg 424 (626)
.||+|..++|-
T Consensus 164 ~fDVVYlDPMf 174 (250)
T PRK10742 164 RPQVVYLDPMF 174 (250)
T ss_pred CCcEEEECCCC
Confidence 79999999873
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.024 Score=59.79 Aligned_cols=76 Identities=11% Similarity=0.085 Sum_probs=46.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc-CCCCCcEEEEEecccc-c-----CCCCC
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE-QWAQSDVTIVSEDMRT-W-----NAPEK 414 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n-~~~~~nV~vi~~D~~~-~-----~~p~k 414 (626)
..++||||+|...+ ..+-+++..| .+++|.|+++.++ .|+++++.| ++.++ |+++...-.. + ...++
T Consensus 103 ~v~glDIGTGAscI--YpLLg~~~~~--W~fvaTdID~~sl~~A~~nv~~N~~L~~~-I~l~~~~~~~~i~~~i~~~~e~ 177 (299)
T PF05971_consen 103 KVRGLDIGTGASCI--YPLLGAKLYG--WSFVATDIDPKSLESARENVERNPNLESR-IELRKQKNPDNIFDGIIQPNER 177 (299)
T ss_dssp --EEEEES-TTTTH--HHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-TTT-EEEEE--ST-SSTTTSTT--S-
T ss_pred ceEeecCCccHHHH--HHHHhhhhcC--CeEEEecCCHHHHHHHHHHHHhccccccc-eEEEEcCCccccchhhhcccce
Confidence 56899999997633 1233444455 6999999999887 888999999 99998 9998764332 1 11378
Q ss_pred ccEEEeccc
Q psy17734 415 ADIMVSELL 423 (626)
Q Consensus 415 ~DiIVSEll 423 (626)
+|..+|++.
T Consensus 178 ~dftmCNPP 186 (299)
T PF05971_consen 178 FDFTMCNPP 186 (299)
T ss_dssp EEEEEE---
T ss_pred eeEEecCCc
Confidence 999999986
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >TIGR00587 nfo apurinic endonuclease (APN1) | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.21 Score=52.02 Aligned_cols=106 Identities=19% Similarity=0.140 Sum_probs=71.4
Q ss_pred EEeecCCCCCCHHHHHHHHHhCCccEEEecCCCccccc-ccccccccccCCCCcccccCCCCCcCccceEEEecCCc-cc
Q psy17734 9 SVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFAR-HKDVDRYRVFGLPEAQVQSLSSICPQWLKLIVCDIQCK-LK 86 (626)
Q Consensus 9 ~~g~~~~~~~~~~~~~~~~~~~~~df~~~pi~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~s~w-~~ 86 (626)
.+|..+.....+.+++..+.+.|||++=+-+.+|++-. ...... . ...+.+-+.. ..-....+..-+++ +
T Consensus 2 ~~g~h~s~~g~~~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~-~----~~~~~~~~~~--~~~~~~~i~~Hapy~i- 73 (274)
T TIGR00587 2 LLGAHVSAAGGLQAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEE-V----IDWFKAALET--NKNLSQIVLVHAPYLI- 73 (274)
T ss_pred ceEEEEeccCCHHHHHHHHHHhCCCEEEEEecCccccCCCCCCHH-H----HHHHHHHHHH--cCCCCcceeccCCeee-
Confidence 35666666678999999999999999999999987432 111100 0 0001000100 00001113344555 7
Q ss_pred ccCCccHHHHHHHHHHHHHHHhhhhhhCCCeEEEcC
Q psy17734 87 DFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSL 122 (626)
Q Consensus 87 ~~ds~~~~~~~~s~~~l~~e~~~a~~~g~~~~i~~~ 122 (626)
.+.|+|+.+|+.|.+.+++++..|+.+|.+.|.+.+
T Consensus 74 Nlas~~~~~r~~sv~~~~~~i~~A~~lga~~vv~H~ 109 (274)
T TIGR00587 74 NLASPDEEKEEKSLDVLDEELKRCELLGIMLYNFHP 109 (274)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 999999999999999999999999999999988843
|
All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.016 Score=60.86 Aligned_cols=109 Identities=18% Similarity=0.091 Sum_probs=74.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC---CCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---APEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---~p~k~Di 417 (626)
++..|||+.||.|.=+..++ ...+.+..|+|+|.++.-. ....+.++.|.. +|.++..|.+... ....||.
T Consensus 85 ~~~~VLD~CAapGgKt~~la---~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~--~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLA---ELMGNKGEIVANDISPKRLKRLKENLKRLGVF--NVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHH---HHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S--SEEEEESHHHHHHHHHHTTTEEE
T ss_pred ccccccccccCCCCceeeee---ecccchhHHHHhccCHHHHHHHHHHHHhcCCc--eEEEEeeccccccccccccccch
Confidence 67889999999998875433 3333346999999998766 444555566654 6999989988873 2346999
Q ss_pred EEeccccc----cCCCCC----------------cHHHHHHHHHhc----ccCcEEEeccce
Q psy17734 418 MVSELLGS----FGDNEL----------------SPECLYAAQKYL----KEDGISIPYNYT 455 (626)
Q Consensus 418 IVSEllgs----fg~~El----------------~pe~L~~~~r~L----kpgGi~IP~~~t 455 (626)
|+.+..-| +.-+.. -.++|+.+.+++ ||||+++=..+|
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 99876422 221111 023677788899 999999855544
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.04 Score=51.74 Aligned_cols=87 Identities=26% Similarity=0.384 Sum_probs=58.3
Q ss_pred EEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--CC-CccEEEecccccc--CCCCCc--H----HHHHHH
Q psy17734 372 RVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--PE-KADIMVSELLGSF--GDNELS--P----ECLYAA 439 (626)
Q Consensus 372 ~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--p~-k~DiIVSEllgsf--g~~El~--p----e~L~~~ 439 (626)
+|||.|+-+.|+ .+++.+...+..++ |++++..-+++.. ++ ++|.+|-++ |+. +|.+.. + +.++++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~-v~li~~sHe~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDR-VTLILDSHENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSG-EEEEES-GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCc-EEEEECCHHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 699999999998 77888888888777 9999988777653 44 899999875 443 344332 2 245666
Q ss_pred HHhcccCcEEEeccceeeEEe
Q psy17734 440 QKYLKEDGISIPYNYTSYIAP 460 (626)
Q Consensus 440 ~r~LkpgGi~IP~~~t~y~ap 460 (626)
.+.|+|||+++--.|.=+-..
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG 99 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGG 99 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHH
T ss_pred HHhhccCCEEEEEEeCCCCCC
Confidence 788999999887666544433
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.012 Score=65.26 Aligned_cols=105 Identities=15% Similarity=0.199 Sum_probs=58.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVS 420 (626)
.-.++||+|||+|.++. ....+ + +.+..+-.+.......|.+.+.|...- +.++ -...++.| ..||+|=|
T Consensus 117 ~iR~~LDvGcG~aSF~a---~l~~r-~--V~t~s~a~~d~~~~qvqfaleRGvpa~-~~~~--~s~rLPfp~~~fDmvHc 187 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGA---YLLER-N--VTTMSFAPNDEHEAQVQFALERGVPAM-IGVL--GSQRLPFPSNAFDMVHC 187 (506)
T ss_pred ceEEEEeccceeehhHH---HHhhC-C--ceEEEcccccCCchhhhhhhhcCcchh-hhhh--ccccccCCccchhhhhc
Confidence 34579999999999984 33331 1 344444443222222222223343221 1111 12345554 67999844
Q ss_pred -ccccccCCCCCcHHHHHHHHHhcccCcEEEeccceee
Q psy17734 421 -ELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSY 457 (626)
Q Consensus 421 -Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y 457 (626)
-.+-.+..++++ .|..+.|.|+|||.++=+.--+|
T Consensus 188 src~i~W~~~~g~--~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 188 SRCLIPWHPNDGF--LLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccccccchhcccc--eeehhhhhhccCceEEecCCccc
Confidence 223233334332 67788999999999997766555
|
; GO: 0008168 methyltransferase activity |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.079 Score=52.96 Aligned_cols=122 Identities=15% Similarity=0.107 Sum_probs=63.4
Q ss_pred hCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHc
Q psy17734 313 EKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEE 392 (626)
Q Consensus 313 e~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n 392 (626)
.+.|.....|++.|.+. +..+|+++|.=.|.=..+.+...+..|.+.+|++||.+..... ++.....
T Consensus 15 ~q~P~Dm~~~qeli~~~------------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~-~~a~e~h 81 (206)
T PF04989_consen 15 IQYPQDMVAYQELIWEL------------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN-RKAIESH 81 (206)
T ss_dssp SS-HHHHHHHHHHHHHH--------------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT---S-GGGG-
T ss_pred hcCHHHHHHHHHHHHHh------------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc-hHHHhhc
Confidence 45566667788777664 3468999999887655555555555555579999999632221 1112223
Q ss_pred CCCCCcEEEEEecccccCC---------CCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 393 QWAQSDVTIVSEDMRTWNA---------PEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 393 ~~~~~nV~vi~~D~~~~~~---------p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
.+..+ |++++||..+.+. +....+||- ++--..+..-..|+....++++|+.+|-
T Consensus 82 p~~~r-I~~i~Gds~d~~~~~~v~~~~~~~~~vlVil---Ds~H~~~hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 82 PMSPR-ITFIQGDSIDPEIVDQVRELASPPHPVLVIL---DSSHTHEHVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp ---TT-EEEEES-SSSTHHHHTSGSS----SSEEEEE---SS----SSHHHHHHHHHHT--TT-EEEE
T ss_pred cccCc-eEEEECCCCCHHHHHHHHHhhccCCceEEEE---CCCccHHHHHHHHHHhCccCCCCCEEEE
Confidence 45566 9999999987531 123345543 3333345555566777789999999873
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG4589|consensus | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.023 Score=55.53 Aligned_cols=95 Identities=23% Similarity=0.239 Sum_probs=61.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEe-cccccC--------C
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSE-DMRTWN--------A 411 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~-D~~~~~--------~ 411 (626)
.++.+|||+||-.|.++.- |-++.+.+..|.+||.-+. .... .++++.+ |+++-. +
T Consensus 68 ~p~~~VlD~G~APGsWsQV---avqr~~p~g~v~gVDllh~----------~p~~--Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQV---AVQRVNPNGMVLGVDLLHI----------EPPE--GATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred CCCCEEEEccCCCChHHHH---HHHhhCCCceEEEEeeeec----------cCCC--CcccccccccCCHHHHHHHHHhC
Confidence 3678999999999999964 4455566679999997531 1111 3777776 666532 2
Q ss_pred C-CCccEEEeccccc-----cCCCCCcHHH----HHHHHHhcccCcEEE
Q psy17734 412 P-EKADIMVSELLGS-----FGDNELSPEC----LYAAQKYLKEDGISI 450 (626)
Q Consensus 412 p-~k~DiIVSEllgs-----fg~~El~pe~----L~~~~r~LkpgGi~I 450 (626)
| .++|+|+|++... ..|++.+-+. |.-+-.+++|+|.++
T Consensus 133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 2 6899999987532 2334333332 322335678999877
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.043 Score=62.57 Aligned_cols=80 Identities=18% Similarity=0.236 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcC----CccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEAN----RKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN------ 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g----~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~------ 410 (626)
...+|+|.|||+|.+...++......+ .+..++|+|.++.++ .+..++...+ .. ++.+++.|.....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-~~-~~~i~~~d~l~~~~~~~~~ 108 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-LL-EINVINFNSLSYVLLNIES 108 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-CC-Cceeeeccccccccccccc
Confidence 346899999999999877766554211 235899999999887 5555554433 11 2566666543211
Q ss_pred CCCCccEEEeccc
Q psy17734 411 APEKADIMVSELL 423 (626)
Q Consensus 411 ~p~k~DiIVSEll 423 (626)
..++||+||+++.
T Consensus 109 ~~~~fD~IIgNPP 121 (524)
T TIGR02987 109 YLDLFDIVITNPP 121 (524)
T ss_pred ccCcccEEEeCCC
Confidence 1258999999985
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.049 Score=50.16 Aligned_cols=70 Identities=23% Similarity=0.170 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++++|+|||++-|--+...+..++ .+|+|+|+++... ...++.+.+..-++ ..-.. +|+.. +.+|+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA-----K~Vva~E~~~kl~k~~een~k~nnI~DK-~v~~~----eW~~~Y~~~Di~~ 97 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA-----SFVVQYEKEEKLRKKWEEVCAYFNICDK-AVMKG----EWNGEYEDVDIFV 97 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc-----cEEEEeccCHHHHHHHHHHhhhheeeec-eeecc----cccccCCCcceEE
Confidence 678999999999988876555554 4999999999776 55555555544444 22211 45432 6899987
Q ss_pred ec
Q psy17734 420 SE 421 (626)
Q Consensus 420 SE 421 (626)
.+
T Consensus 98 iD 99 (156)
T PHA01634 98 MD 99 (156)
T ss_pred EE
Confidence 63
|
|
| >KOG1227|consensus | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.0056 Score=63.66 Aligned_cols=94 Identities=27% Similarity=0.187 Sum_probs=69.9
Q ss_pred CCEEEEEcCCCchHHH-HHHHHHhhcCCccEEEEEeCCHHHHHHH-HHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 343 VTTIMVVGAGRGPLVT-ASLNAAKEANRKVRVYAVEKNMSAVVGL-KYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~-~al~Aa~~~g~~~~V~AVE~np~a~~a~-~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
+.+|.|+-||-|-++. +.+.|++ ..|+|+|.||.++.++ +.+..|+..++ -.++.+|-|...+...+|-|.-
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agA-----k~V~A~EwNp~svEaLrR~~~~N~V~~r-~~i~~gd~R~~~~~~~AdrVnL 268 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGA-----KTVFACEWNPWSVEALRRNAEANNVMDR-CRITEGDNRNPKPRLRADRVNL 268 (351)
T ss_pred cchhhhhhcccceEEeehhhccCc-----cEEEEEecCHHHHHHHHHHHHhcchHHH-HHhhhccccccCccccchheee
Confidence 4689999999999987 6666665 5999999999998665 45667887777 8899999999988888999876
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcE
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGI 448 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi 448 (626)
-++-|. .++.+. +-+.|||.|-
T Consensus 269 GLlPSs--e~~W~~----A~k~Lk~egg 290 (351)
T KOG1227|consen 269 GLLPSS--EQGWPT----AIKALKPEGG 290 (351)
T ss_pred cccccc--ccchHH----HHHHhhhcCC
Confidence 554432 122232 4456787554
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.058 Score=58.97 Aligned_cols=97 Identities=20% Similarity=0.168 Sum_probs=71.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhh-cCCccEEEEEeCCHHHH-HHHHHHHHcCCCC-CcEEEEEecccccC--CCCCccE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKE-ANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQ-SDVTIVSEDMRTWN--APEKADI 417 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~-~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~-~nV~vi~~D~~~~~--~p~k~Di 417 (626)
..+|||.=||+|.=+ ++.+++ .+. .+|++-|.|+.|+ ...++++.|+..+ + |++.+.|+..+- ..++||+
T Consensus 50 ~~~~lDalaasGvR~---iRy~~E~~~~-~~v~~NDi~~~a~~~i~~N~~~N~~~~~~-~~v~~~DAn~ll~~~~~~fD~ 124 (377)
T PF02005_consen 50 PIRVLDALAASGVRG---IRYAKELAGV-DKVTANDISPEAVELIKRNLELNGLEDER-IEVSNMDANVLLYSRQERFDV 124 (377)
T ss_dssp -EEEEETT-TTSHHH---HHHHHH-SSE-CEEEEEES-HHHHHHHHHHHHHCT-SGCC-EEEEES-HHHHHCHSTT-EEE
T ss_pred CceEEeccccccHHH---HHHHHHcCCC-CEEEEecCCHHHHHHHHHhHhhccccCce-EEEehhhHHHHhhhccccCCE
Confidence 468999999999987 466666 343 5999999999988 7788888999987 6 999999988864 5689999
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|=-++.|+ .-.+|+++-+.+|.||++.
T Consensus 125 IDlDPfGS------p~pfldsA~~~v~~gGll~ 151 (377)
T PF02005_consen 125 IDLDPFGS------PAPFLDSALQAVKDGGLLC 151 (377)
T ss_dssp EEE--SS--------HHHHHHHHHHEEEEEEEE
T ss_pred EEeCCCCC------ccHhHHHHHHHhhcCCEEE
Confidence 97666542 2358999999999999865
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.041 Score=56.93 Aligned_cols=105 Identities=22% Similarity=0.179 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHH-----------------cC----C------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKE-----------------EQ----W------ 394 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~-----------------n~----~------ 394 (626)
++.++||||||.-+... +.|.... .+|+..|-.+.-...++.-.+ .| |
T Consensus 56 ~g~~llDiGsGPtiy~~--lsa~~~f---~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~ 130 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQL--LSACEWF---EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEK 130 (256)
T ss_dssp -EEEEEEES-TT--GGG--TTGGGTE---EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhh--hhHHHhh---cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHH
Confidence 56799999999866542 3444433 389999988754432221111 11 1
Q ss_pred -CCCcEE-EEEecccccC-------CCCCccEEEecccc-ccC-CCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 395 -AQSDVT-IVSEDMRTWN-------APEKADIMVSELLG-SFG-DNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 395 -~~~nV~-vi~~D~~~~~-------~p~k~DiIVSEllg-sfg-~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
... |+ |+.+|+.+.+ .|.++|+|+|-+.- +.. +.+.-...+..+.++|||||.+|-.
T Consensus 131 lR~~-Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 131 LRRA-VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp HHHH-EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHh-hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 112 44 8889998743 24569999983311 111 1111123566677889999998853
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.14 Score=50.94 Aligned_cols=99 Identities=20% Similarity=0.260 Sum_probs=64.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC----CCC
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA----PEK 414 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~----p~k 414 (626)
..++..||=+||-+|.-+...... .+ +..|||||.+|... ..+...... . |+--|-+|++.-+. -++
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDI---v~-~G~iYaVEfs~R~~reLl~~a~~R---~-Ni~PIL~DA~~P~~Y~~~Ve~ 145 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDI---VG-EGRIYAVEFSPRPMRELLDVAEKR---P-NIIPILEDARKPEKYRHLVEK 145 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhc---cC-CCcEEEEEecchhHHHHHHHHHhC---C-CceeeecccCCcHHhhhhccc
Confidence 347889999999999877533332 33 35999999998554 222222221 1 58888889886542 278
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+|+|..+.-- .....-+.+.++.|||+||.++
T Consensus 146 VDviy~DVAQ----p~Qa~I~~~Na~~FLk~~G~~~ 177 (231)
T COG1889 146 VDVIYQDVAQ----PNQAEILADNAEFFLKKGGYVV 177 (231)
T ss_pred ccEEEEecCC----chHHHHHHHHHHHhcccCCeEE
Confidence 9999886521 1112234577888999998543
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.066 Score=53.75 Aligned_cols=83 Identities=25% Similarity=0.293 Sum_probs=57.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC----CCccEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP----EKADIM 418 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p----~k~DiI 418 (626)
..++|||||=+.-. +....+. ..|++||.|+. .-.|.+.|.-+.++| ++||+|
T Consensus 52 ~lrlLEVGals~~N------~~s~~~~-fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvI 108 (219)
T PF11968_consen 52 KLRLLEVGALSTDN------ACSTSGW-FDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVI 108 (219)
T ss_pred cceEEeecccCCCC------cccccCc-eeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEE
Confidence 36899999953322 1122232 58999999961 144667787776654 799999
Q ss_pred EeccccccCC-CCCcHHHHHHHHHhcccCcE
Q psy17734 419 VSELLGSFGD-NELSPECLYAAQKYLKEDGI 448 (626)
Q Consensus 419 VSEllgsfg~-~El~pe~L~~~~r~LkpgGi 448 (626)
++-++-.|.. ...--+|+..+.++|+|+|.
T Consensus 109 s~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 109 SLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred EEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 8877655443 33346799999999999998
|
|
| >KOG3178|consensus | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.15 Score=54.63 Aligned_cols=93 Identities=24% Similarity=0.298 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHH-HHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVG-LKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a-~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
-.+.+|+|+|.|.+....+. . +. +|-+++.....+.+ ..... . .|+-+.+||.+- .| +.|+|+.-
T Consensus 178 v~~avDvGgGiG~v~k~ll~--~-fp---~ik~infdlp~v~~~a~~~~-----~-gV~~v~gdmfq~-~P-~~daI~mk 243 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS--K-YP---HIKGINFDLPFVLAAAPYLA-----P-GVEHVAGDMFQD-TP-KGDAIWMK 243 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH--h-CC---CCceeecCHHHHHhhhhhhc-----C-Ccceeccccccc-CC-CcCeEEEE
Confidence 46899999999999876665 2 32 67788888654433 32221 2 389999999876 44 57899887
Q ss_pred cc-cccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 422 LL-GSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 422 ll-gsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|+ |++.|. ..-.+|..+.+-|+|+|.+|
T Consensus 244 WiLhdwtDe-dcvkiLknC~~sL~~~GkIi 272 (342)
T KOG3178|consen 244 WILHDWTDE-DCVKILKNCKKSLPPGGKII 272 (342)
T ss_pred eecccCChH-HHHHHHHHHHHhCCCCCEEE
Confidence 74 555554 34668888999999988654
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.18 Score=50.79 Aligned_cols=107 Identities=15% Similarity=0.125 Sum_probs=76.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccc-cCCCCCccEEEe
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRT-WNAPEKADIMVS 420 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~-~~~p~k~DiIVS 420 (626)
+..+.|+||--|-|...+++-.. + ..++|+|.++... .+.+++.++++.++ +++..+|.-. +.....+|++|-
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~---~-~~~va~eV~~gpl~~a~~~v~~~~l~~~-i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNP---A-STAVAGEVVPGPLESAIRNVKKNNLSER-IDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCC---c-ceEEEeecccCHHHHHHHHHHhcCCcce-EEEeccCCccccCccCCcCEEEE
Confidence 44599999999999976554322 2 5999999999877 78889999999998 9999999854 334458999877
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEeccChH
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHK 465 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~ 465 (626)
--|| +-++-++|+...+.|+ .--..-++|...+.
T Consensus 92 AGMG----G~lI~~ILee~~~~l~-------~~~rlILQPn~~~~ 125 (226)
T COG2384 92 AGMG----GTLIREILEEGKEKLK-------GVERLILQPNIHTY 125 (226)
T ss_pred eCCc----HHHHHHHHHHhhhhhc-------CcceEEECCCCCHH
Confidence 5554 2345666666555443 33445577877764
|
|
| >KOG3987|consensus | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.0079 Score=59.52 Aligned_cols=92 Identities=26% Similarity=0.301 Sum_probs=56.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-CCCCCccEEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-NAPEKADIMV 419 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-~~p~k~DiIV 419 (626)
.++.++||+|||.|-++.. .+... -+|||.|.|..+.-.++..+.|- ++.+ +| +..-|+|+|.
T Consensus 111 ~~~~~lLDlGAGdGeit~~---m~p~f---eevyATElS~tMr~rL~kk~ynV-----l~~~-----ew~~t~~k~dli~ 174 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLR---MAPTF---EEVYATELSWTMRDRLKKKNYNV-----LTEI-----EWLQTDVKLDLIL 174 (288)
T ss_pred CCCeeEEeccCCCcchhhh---hcchH---HHHHHHHhhHHHHHHHhhcCCce-----eeeh-----hhhhcCceeehHH
Confidence 3568999999999999853 33322 27999999987775555432221 1211 22 2235789987
Q ss_pred e-ccccccCCCCCcHHHHHHHHHhccc-CcEEEe
Q psy17734 420 S-ELLGSFGDNELSPECLYAAQKYLKE-DGISIP 451 (626)
Q Consensus 420 S-Ellgsfg~~El~pe~L~~~~r~Lkp-gGi~IP 451 (626)
+ ++++-+.+ .-..|+.+...|+| +|.+|-
T Consensus 175 clNlLDRc~~---p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 175 CLNLLDRCFD---PFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred HHHHHHhhcC---hHHHHHHHHHHhccCCCcEEE
Confidence 6 44432211 13467778888888 777664
|
|
| >KOG1562|consensus | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.066 Score=55.90 Aligned_cols=112 Identities=14% Similarity=0.212 Sum_probs=74.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHH--HcCCCCCcEEEEEecccccC---CCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKK--EEQWAQSDVTIVSEDMRTWN---APEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~--~n~~~~~nV~vi~~D~~~~~---~p~k~ 415 (626)
..++||+||.|.|+.-+..++. +..+ .+.-+|.+.+.+ ..++... ..++.++.|.+.-||-..+- ..+++
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve---~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVE---NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-cccc---ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCc
Confidence 4578999999999987654444 2222 788888887655 5555442 35677767999999865541 13789
Q ss_pred cEEEeccccccCCCCCc--HHHHHHHHHhcccCcEEEeccceee
Q psy17734 416 DIMVSELLGSFGDNELS--PECLYAAQKYLKEDGISIPYNYTSY 457 (626)
Q Consensus 416 DiIVSEllgsfg~~El~--pe~L~~~~r~LkpgGi~IP~~~t~y 457 (626)
|+|+.|.-.-.|..+.. .....-..+.||+||+.+-+.-.++
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~w 240 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMW 240 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceeh
Confidence 99998764433333331 2344556788999999887654433
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.29 Score=50.84 Aligned_cols=109 Identities=13% Similarity=0.135 Sum_probs=63.6
Q ss_pred CCEEEEEcCCC--chHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC---------
Q psy17734 343 VTTIMVVGAGR--GPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--------- 410 (626)
Q Consensus 343 ~~~VLDvG~Gt--G~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--------- 410 (626)
-.-.||+|||- -..+- +.++......+|+-||.+|... .++..+..+. .++ ..++.+|+++..
T Consensus 69 IrQFLDlGsGlPT~~nvH---evAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-~g~-t~~v~aD~r~p~~iL~~p~~~ 143 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVH---EVAQRVAPDARVVYVDNDPVVLAHARALLADNP-RGR-TAYVQADLRDPEAILAHPEVR 143 (267)
T ss_dssp --EEEEET--S--SS-HH---HHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-TSE-EEEEE--TT-HHHHHCSHHHH
T ss_pred cceEEEcccCCCCCCCHh---HHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-Ccc-EEEEeCCCCCHHHHhcCHHHH
Confidence 35699999993 22332 2333333447999999999877 3344443332 233 899999999743
Q ss_pred ----CCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEecccee
Q psy17734 411 ----APEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTS 456 (626)
Q Consensus 411 ----~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~ 456 (626)
+.+++=+++..+|.+..+.+....++......|.||..++-+..|.
T Consensus 144 ~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 144 GLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp CC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred hcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 2367888888888877776766778888889999999888766654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG2730|consensus | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.075 Score=53.32 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=47.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN 410 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~ 410 (626)
..+|+|.-||-|.-... .|++ + ..|+|||.+|.-+ .|+.+++-.|..++ |++|+||..++-
T Consensus 95 ~~~iidaf~g~gGntiq--fa~~--~--~~VisIdiDPikIa~AkhNaeiYGI~~r-ItFI~GD~ld~~ 156 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQ--FALQ--G--PYVIAIDIDPVKIACARHNAEVYGVPDR-ITFICGDFLDLA 156 (263)
T ss_pred cchhhhhhhcCCchHHH--HHHh--C--CeEEEEeccHHHHHHHhccceeecCCce-eEEEechHHHHH
Confidence 35789999998877642 3332 3 3999999999644 78888777899998 999999988753
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.68 Score=50.07 Aligned_cols=91 Identities=25% Similarity=0.371 Sum_probs=56.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEE-ec-----ccccCCCCCcc
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVS-ED-----MRTWNAPEKAD 416 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~-~D-----~~~~~~p~k~D 416 (626)
.+|+++||| +++++++.+++..|+ .+|+++|.++.-. .|++.. +.. +.+.. .+ +.+......+|
T Consensus 170 ~~V~V~GaG--pIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~~-----g~~-~~~~~~~~~~~~~~~~~t~g~g~D 240 (350)
T COG1063 170 GTVVVVGAG--PIGLLAIALAKLLGA-SVVIVVDRSPERLELAKEAG-----GAD-VVVNPSEDDAGAEILELTGGRGAD 240 (350)
T ss_pred CEEEEECCC--HHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHhC-----CCe-EeecCccccHHHHHHHHhCCCCCC
Confidence 389999987 466666777777787 5999999998655 444422 111 11111 11 01111123699
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+++= ..| .+..+..+.+.++++|.++-
T Consensus 241 ~vie-~~G-------~~~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 241 VVIE-AVG-------SPPALDQALEALRPGGTVVV 267 (350)
T ss_pred EEEE-CCC-------CHHHHHHHHHHhcCCCEEEE
Confidence 9863 333 56688888899999998663
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.73 Score=49.59 Aligned_cols=92 Identities=21% Similarity=0.261 Sum_probs=59.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEec-ccccC-CCCCccE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSED-MRTWN-APEKADI 417 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D-~~~~~-~p~k~Di 417 (626)
.++..|+.+|+| -|+.++++.|+..| .+|+|++.++.-. .+++. +. -.++.+. ....+ ..+.+|+
T Consensus 165 ~pG~~V~I~G~G--GlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l------GA--d~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 165 KPGKWVAVVGAG--GLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL------GA--DHVINSSDSDALEAVKEIADA 232 (339)
T ss_pred CCCCEEEEECCc--HHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh------CC--cEEEEcCCchhhHHhHhhCcE
Confidence 478899999999 46667788888778 4999999998644 44433 21 3333322 22221 1245999
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
++.-. . +.-+...-+.|+++|.++--.
T Consensus 233 ii~tv--------~-~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 233 IIDTV--------G-PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred EEECC--------C-hhhHHHHHHHHhcCCEEEEEC
Confidence 98721 1 345667778899999877443
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.68 Score=52.61 Aligned_cols=98 Identities=13% Similarity=0.161 Sum_probs=58.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEe-c--------ccccCC
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSE-D--------MRTWNA 411 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~-D--------~~~~~~ 411 (626)
.++.+|+++|||. .++.++.+++..|+ +|+++|.++......+. ++.+ ...++. + .+++..
T Consensus 163 ~pg~kVlViGaG~--iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aes-----lGA~-~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 163 VPPAKVLVIGAGV--AGLAAIGAAGSLGA--IVRAFDTRPEVAEQVES-----MGAE-FLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred cCCCEEEEECCcH--HHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH-----cCCe-EEEeccccccccccchhhhcch
Confidence 3578999999985 66666888888886 79999999865532222 2211 221211 0 011110
Q ss_pred C-------------CCccEEEeccccccCC-CCCcHHHH-HHHHHhcccCcEEEec
Q psy17734 412 P-------------EKADIMVSELLGSFGD-NELSPECL-YAAQKYLKEDGISIPY 452 (626)
Q Consensus 412 p-------------~k~DiIVSEllgsfg~-~El~pe~L-~~~~r~LkpgGi~IP~ 452 (626)
. ..+|++|.- .+. ....|..+ +..-+.+||||+++--
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIet----ag~pg~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITT----ALIPGKPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEEC----CCCCcccCcchHHHHHHHhcCCCCEEEEE
Confidence 0 359999872 221 12235553 7777889999987643
|
|
| >KOG1596|consensus | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.26 Score=50.10 Aligned_cols=100 Identities=19% Similarity=0.233 Sum_probs=61.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC----CCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA----PEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~----p~k~Di 417 (626)
++..||-+||++|.-+. ....-.|...-|||||.++-+-.-+-+++... . ||--|-.|++.-.- -.-+|+
T Consensus 156 pGsKVLYLGAasGttVS---HvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-t--NiiPIiEDArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 156 PGSKVLYLGAASGTTVS---HVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-T--NIIPIIEDARHPAKYRMLVGMVDV 229 (317)
T ss_pred CCceEEEeeccCCceee---hhhcccCCCceEEEEEecccchHHHHHHhhcc-C--CceeeeccCCCchheeeeeeeEEE
Confidence 67899999999998764 34444566679999999975432232222211 2 46666667775431 136888
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|++++... +...-+.-.++.|||+||-++-
T Consensus 230 IFaDvaqp----dq~RivaLNA~~FLk~gGhfvi 259 (317)
T KOG1596|consen 230 IFADVAQP----DQARIVALNAQYFLKNGGHFVI 259 (317)
T ss_pred EeccCCCc----hhhhhhhhhhhhhhccCCeEEE
Confidence 88865321 1111122356789999997663
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.45 Score=55.84 Aligned_cols=111 Identities=12% Similarity=0.094 Sum_probs=71.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhh---c-----CCccEEEEEeCCHHHH----HHH-----------HHHHH-----cC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKE---A-----NRKVRVYAVEKNMSAV----VGL-----------KYKKE-----EQ 393 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~---~-----g~~~~V~AVE~np~a~----~a~-----------~~~~~-----n~ 393 (626)
+..+|+|+|=|+|...+.++++.+. . ..+.+++++|+.|... .+. +.... .+
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 4479999999999988777766521 1 1247999999976321 111 11100 12
Q ss_pred C------CCC-cEEEEEecccccC--CCCCccEEEeccccccCCCCCc-HHHHHHHHHhcccCcEEEec
Q psy17734 394 W------AQS-DVTIVSEDMRTWN--APEKADIMVSELLGSFGDNELS-PECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 394 ~------~~~-nV~vi~~D~~~~~--~p~k~DiIVSEllgsfg~~El~-pe~L~~~~r~LkpgGi~IP~ 452 (626)
+ +++ +++++.+|+++.- +..++|++.-+-+.---..|.. ++++..+.+.++|||+++..
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 1 111 3668889988742 2357999987554333334443 78999999999999998844
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.38 Score=51.89 Aligned_cols=96 Identities=17% Similarity=0.154 Sum_probs=73.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--CCCccEEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--PEKADIMV 419 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--p~k~DiIV 419 (626)
..+|+|.=+|||.=+ ++.+...+. .+|++-|+||.|+ .++++++.|.-. +..+++.|...+-. ...||+|=
T Consensus 53 ~~~v~DalsatGiRg---IRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~~~--~~~v~n~DAN~lm~~~~~~fd~ID 126 (380)
T COG1867 53 PKRVLDALSATGIRG---IRYAVETGV-VKVVLNDISPKAVELIKENVRLNSGE--DAEVINKDANALLHELHRAFDVID 126 (380)
T ss_pred CeEEeecccccchhH---hhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcCcc--cceeecchHHHHHHhcCCCccEEe
Confidence 468999999999987 566666664 3999999999998 777888877333 47888888766532 37899996
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
-++.|+ ...++|++-+..+.+|++-
T Consensus 127 iDPFGS------PaPFlDaA~~s~~~~G~l~ 151 (380)
T COG1867 127 IDPFGS------PAPFLDAALRSVRRGGLLC 151 (380)
T ss_pred cCCCCC------CchHHHHHHHHhhcCCEEE
Confidence 666553 2348999999999998754
|
|
| >smart00518 AP2Ec AP endonuclease family 2 | Back alignment and domain information |
|---|
Probab=92.73 E-value=1.7 Score=44.87 Aligned_cols=165 Identities=9% Similarity=0.045 Sum_probs=96.7
Q ss_pred EeecCCCCCCHHHHHHHHHhCCccEEEecCCCcccccc--cccccccccCCCCcccccCCCCCcCccceEEEecCCcccc
Q psy17734 10 VGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARH--KDVDRYRVFGLPEAQVQSLSSICPQWLKLIVCDIQCKLKD 87 (626)
Q Consensus 10 ~g~~~~~~~~~~~~~~~~~~~~~df~~~pi~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~s~w~~~ 87 (626)
+|...+....+..+++.+.+.||+.|=+-+..|++-.. .... ....+........-.+....+-++ .
T Consensus 2 ~g~~~~~~~~~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~gl~ls~h~p~~~-n 70 (273)
T smart00518 2 IGAHVSAAGGLYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEE----------TAEKFKEALKENNIDVSVHAPYLI-N 70 (273)
T ss_pred eeEEEcccCcHhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHH----------HHHHHHHHHHHcCCCEEEECCcee-c
Confidence 56666656678899999999999999998888865321 1000 000011100011111222333346 8
Q ss_pred cCCccHHHHHHHHHHHHHHHhhhhhhCCCeEEE-cCCC------CChhhHHHHHHHHhccCCceEEEEEe-eccCCCccc
Q psy17734 88 FESKYVERRDHAKDLLHQELEYITYLGIPFIVV-SLDQ------PDFCNFARTLYAHSEKNMSYTAWIKV-PIRPVDTSM 159 (626)
Q Consensus 88 ~ds~~~~~~~~s~~~l~~e~~~a~~~g~~~~i~-~~~~------~~~~~~ar~~~~~~~~~~~~~~~i~~-p~~~~~~~~ 159 (626)
+-|+|+.+|+.+.+.|++-+..|+.+|.+.|.+ +... ....++++.++........+.+.+.- |-..
T Consensus 71 l~s~d~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~~----- 145 (273)
T smart00518 71 LASPDKEKVEKSIERLIDEIKRCEELGIKALVFHPGSYLKQSKEEALNRIIESLNEVIDETKGVVILLETTAGKG----- 145 (273)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHHHHhccCCcEEEEeccCCCC-----
Confidence 899999999999999999999999999999888 3211 11233444555544321223333221 1110
Q ss_pred cccCCCCCCccchHHHHHHHHHhcCCCCceEEEEEecC
Q psy17734 160 LRQQEEEPSSQDTWRWWNMFRSVTNYHSKFELALEING 197 (626)
Q Consensus 160 ~~~~~~~~~~~~~w~~W~~~r~~c~~~~~l~v~L~l~~ 197 (626)
..-..+.+.+..+-..|+..++++++|++.-
T Consensus 146 -------~~~~~~~~~~~~ll~~v~~~~~~g~~lD~gH 176 (273)
T smart00518 146 -------SQIGSTFEDLKEIIDLIKELDRIGVCIDTCH 176 (273)
T ss_pred -------CccCCCHHHHHHHHHhcCCCCCeEEEEEccc
Confidence 0011345556666666765478999999874
|
These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites |
| >PRK01060 endonuclease IV; Provisional | Back alignment and domain information |
|---|
Probab=92.62 E-value=1.3 Score=45.93 Aligned_cols=121 Identities=14% Similarity=0.095 Sum_probs=76.8
Q ss_pred EEeecCCCCCCHHHHHHHHHhCCccEEEecCCCcccccc-cccccccccCCCCcccccCCCCCcCc-cceEEEecCCc-c
Q psy17734 9 SVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARH-KDVDRYRVFGLPEAQVQSLSSICPQW-LKLIVCDIQCK-L 85 (626)
Q Consensus 9 ~~g~~~~~~~~~~~~~~~~~~~~~df~~~pi~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~v~~~s~w-~ 85 (626)
.+|...+.-.++.++++.+.+.|||.|=+-+.+|++-.. ..... . ...+.+-+.. ... ...++. -++| +
T Consensus 3 ~~g~~~~~~~~~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~-~----~~~lk~~~~~--~gl~~~~~~~-h~~~~~ 74 (281)
T PRK01060 3 LIGAHVSAAGGLEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEEL-N----IEAFKAACEK--YGISPEDILV-HAPYLI 74 (281)
T ss_pred eEEEeeecCCCHHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHH-H----HHHHHHHHHH--cCCCCCceEE-ecceEe
Confidence 578877777789999999999999999887777753211 00000 0 0000000111 111 111222 2344 6
Q ss_pred cccCCccHHHHHHHHHHHHHHHhhhhhhCCCeEEEcC-C---C----CChhhHHHHHHHHh
Q psy17734 86 KDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSL-D---Q----PDFCNFARTLYAHS 138 (626)
Q Consensus 86 ~~~ds~~~~~~~~s~~~l~~e~~~a~~~g~~~~i~~~-~---~----~~~~~~ar~~~~~~ 138 (626)
.+-|+|+.+|+.+.+.+++.++.|+-+|.+.|++-+ . . ....++++.+++.+
T Consensus 75 -nl~~~d~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~ 134 (281)
T PRK01060 75 -NLGNPNKEILEKSRDFLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEAL 134 (281)
T ss_pred -cCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999988832 1 1 12234566666654
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.9 Score=48.48 Aligned_cols=93 Identities=13% Similarity=0.239 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEE---ecccccC-CCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVS---EDMRTWN-APEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~---~D~~~~~-~p~k~Di 417 (626)
++.+||..|| |.++.++++.++..|+ .+|++++.++......+. .|.. .++. .+..++. ....+|+
T Consensus 169 ~g~~VlV~G~--G~vG~~aiqlak~~G~-~~Vi~~~~~~~~~~~a~~---lGa~----~vi~~~~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 169 QGKRVFVSGV--GPIGCLIVAAVKTLGA-AEIVCADVSPRSLSLARE---MGAD----KLVNPQNDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHH---cCCc----EEecCCcccHHHHhccCCCCCE
Confidence 4678999886 6899888888887775 379999999755422222 2321 1221 1122211 1135898
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
++- ..| .+..+..+.+.|+++|.++=-
T Consensus 239 vid-~~G-------~~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 239 SFE-VSG-------HPSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred EEE-CCC-------CHHHHHHHHHHhhcCCEEEEE
Confidence 874 233 244566677889999987743
|
|
| >KOG4058|consensus | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.32 Score=45.98 Aligned_cols=97 Identities=18% Similarity=0.155 Sum_probs=58.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEecc
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSEL 422 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEl 422 (626)
.+.+|+|.|.|-++..+++.+. ..-+++|.||-.+ ..+-..-+.+.+.+ +.+...|+-.+++. .+.-+|-
T Consensus 74 GklvDlGSGDGRiVlaaar~g~-----~~a~GvELNpwLVaysrl~a~R~g~~k~-trf~RkdlwK~dl~-dy~~vvi-- 144 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGL-----RPAVGVELNPWLVAYSRLHAWRAGCAKS-TRFRRKDLWKVDLR-DYRNVVI-- 144 (199)
T ss_pred CcEEeccCCCceeehhhhhhCC-----CcCCceeccHHHHHHHHHHHHHHhcccc-hhhhhhhhhhcccc-ccceEEE--
Confidence 4689999999999864444432 4788999999765 33333345777776 88888887666653 2333322
Q ss_pred ccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 423 LGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 423 lgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
||-...|+..-+....-+..+..++-+
T Consensus 145 ---Fgaes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 145 ---FGAESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred ---eehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 332222444444444345455555544
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.52 Score=48.47 Aligned_cols=71 Identities=14% Similarity=0.102 Sum_probs=45.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHH-HHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVG-LKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a-~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
..+|+|||||.=||+.-.+ .. ..+..++|+|++..++.. .+....-++. .++...|...-..++..|+..-
T Consensus 106 p~sVlDigCGlNPlalp~~--~~--~~~a~Y~a~DID~~~ve~l~~~l~~l~~~---~~~~v~Dl~~~~~~~~~DlaLl 177 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWM--PE--APGATYIAYDIDSQLVEFLNAFLAVLGVP---HDARVRDLLSDPPKEPADLALL 177 (251)
T ss_dssp -SEEEEET-TTCHHHHHTT--TS--STT-EEEEEESBHHHHHHHHHHHHHTT-C---EEEEEE-TTTSHTTSEESEEEE
T ss_pred CchhhhhhccCCceehhhc--cc--CCCcEEEEEeCCHHHHHHHHHHHHhhCCC---cceeEeeeeccCCCCCcchhhH
Confidence 5689999999999985433 22 123599999999987744 4444556663 6676677665555577888753
|
|
| >KOG2798|consensus | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.86 Score=48.22 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=25.4
Q ss_pred CccEEEeccccccCC-CCCcHHHHHHHHHhcccCcEEEe
Q psy17734 414 KADIMVSELLGSFGD-NELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 414 k~DiIVSEllgsfg~-~El~pe~L~~~~r~LkpgGi~IP 451 (626)
.+|+||.-+ |-| .+.+-+.|+.+.+.|||||+-|-
T Consensus 259 ~~d~VvTcf---FIDTa~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 259 SYDVVVTCF---FIDTAHNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred ccceEEEEE---EeechHHHHHHHHHHHHhccCCcEEEe
Confidence 478887753 333 33467789999999999999773
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.66 Score=49.28 Aligned_cols=74 Identities=14% Similarity=0.189 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA------PEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~------p~k 414 (626)
++.+++|.=+|.|.-+..++.+.. . .+|+|+|.++.|. .+.+.+. .+.++ +++++++..++.. ..+
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~---~-g~vigiD~D~~Al~~ak~~L~--~~~~R-~~~i~~nF~~l~~~l~~~~~~~ 92 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLG---T-GRLIGIDRDPQAIAFAKERLS--DFEGR-VVLIHDNFANFFEHLDELLVTK 92 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCC---C-CEEEEEcCCHHHHHHHHHHHh--hcCCc-EEEEeCCHHHHHHHHHhcCCCc
Confidence 456899999999999987665542 1 4999999999988 4444443 34566 9999999887631 146
Q ss_pred ccEEEecc
Q psy17734 415 ADIMVSEL 422 (626)
Q Consensus 415 ~DiIVSEl 422 (626)
+|.|+.++
T Consensus 93 vDgIl~DL 100 (305)
T TIGR00006 93 IDGILVDL 100 (305)
T ss_pred ccEEEEec
Confidence 89998865
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG1122|consensus | Back alignment and domain information |
|---|
Probab=91.25 E-value=1.2 Score=48.94 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=76.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC---CCCCc
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---APEKA 415 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---~p~k~ 415 (626)
..++.+|||..|-.|.=+...+..-+.. ..|||.|.|.+-+ ....++.+-|.. |-.+++.|+++++ .+..|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~---G~I~AnD~n~~r~~~l~~n~~rlGv~--ntiv~n~D~~ef~~~~~~~~f 313 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNT---GVIFANDSNENRLKSLKANLHRLGVT--NTIVSNYDGREFPEKEFPGSF 313 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCC---ceEEecccchHHHHHHHHHHHHhCCC--ceEEEccCcccccccccCccc
Confidence 4578899999999987765433333333 4999999998766 445566667765 5778888998764 33479
Q ss_pred cEEEecccccc--C--------CCCC----------cHHHHHHHHHhcccCcEEEeccceeeE
Q psy17734 416 DIMVSELLGSF--G--------DNEL----------SPECLYAAQKYLKEDGISIPYNYTSYI 458 (626)
Q Consensus 416 DiIVSEllgsf--g--------~~El----------~pe~L~~~~r~LkpgGi~IP~~~t~y~ 458 (626)
|-|+-+-.-|. . .++. ..+.|..+-..+++||+++=+.+++-.
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 99876543222 1 1221 123566667788999999987776543
|
|
| >KOG1253|consensus | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.35 Score=53.83 Aligned_cols=102 Identities=18% Similarity=0.083 Sum_probs=77.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CC---CCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--AP---EKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p---~k~ 415 (626)
++.+|||.=+++|.-+. +-+++.+.-.+|+|-|.+++++ ..+++++.|+-.+. |+..++|+..+- .+ ..|
T Consensus 109 ~~l~vLealsAtGlrsl---Rya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~i-ve~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSL---RYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDI-VEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred CcchHHHHhhhhhHHHH---HHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhh-cccccchHHHHHHhcccccccc
Confidence 56789999999998875 4444433225999999999998 57788888988888 999999987653 22 789
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
|+|=-++.|+ ...+||++-+.++.||++.-.+
T Consensus 185 DvIDLDPyGs------~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 185 DVIDLDPYGS------PSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ceEecCCCCC------ccHHHHHHHHHhhcCCEEEEEe
Confidence 9996555442 2458999999999999976443
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.33 Score=43.51 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCC
Q psy17734 314 KDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN 379 (626)
Q Consensus 314 ~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~n 379 (626)
.||.|.-.-.-||...+..+..+.....+.....|+|||.|.|+-.+...+ .+=+|+|.-
T Consensus 30 TdP~K~VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EG------y~G~GiD~R 89 (112)
T PF07757_consen 30 TDPQKHVFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEG------YPGWGIDAR 89 (112)
T ss_pred CCchhhHHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCC------CCccccccc
Confidence 466665555566777666554433333344568999999999996544333 244566654
|
; GO: 0008168 methyltransferase activity |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.52 E-value=0.63 Score=47.52 Aligned_cols=74 Identities=12% Similarity=0.147 Sum_probs=41.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HH---HHHHHHcCCC-----CCcEEEEEecccccC--CC
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VG---LKYKKEEQWA-----QSDVTIVSEDMRTWN--AP 412 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a---~~~~~~n~~~-----~~nV~vi~~D~~~~~--~p 412 (626)
.+|||.-+|-|.=+..++ . .| .+|+++|.||... +. ++........ .+ ++++++|..++- ..
T Consensus 77 ~~VLDaTaGLG~Da~vlA---~-~G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~r-i~l~~~d~~~~L~~~~ 149 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLA---S-LG--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRR-IQLIHGDALEYLRQPD 149 (234)
T ss_dssp --EEETT-TTSHHHHHHH---H-HT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHH-EEEEES-CCCHCCCHS
T ss_pred CEEEECCCcchHHHHHHH---c-cC--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhC-CEEEcCCHHHHHhhcC
Confidence 489999999998875332 2 35 3899999999544 22 2222222221 34 999999999863 24
Q ss_pred CCccEEEecccc
Q psy17734 413 EKADIMVSELLG 424 (626)
Q Consensus 413 ~k~DiIVSEllg 424 (626)
..+|+|..++|-
T Consensus 150 ~s~DVVY~DPMF 161 (234)
T PF04445_consen 150 NSFDVVYFDPMF 161 (234)
T ss_dssp S--SEEEE--S-
T ss_pred CCCCEEEECCCC
Confidence 789999999883
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG0024|consensus | Back alignment and domain information |
|---|
Probab=90.39 E-value=2.5 Score=45.08 Aligned_cols=91 Identities=18% Similarity=0.125 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC----------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---------- 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---------- 410 (626)
.+.+||.+|||. .++.++.+|+..|+ .+|+.+|.+++.+ .|++ + |. . +..-.......+
T Consensus 169 ~Gs~vLV~GAGP--IGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~-~---Ga--~-~~~~~~~~~~~~~~~~~v~~~~ 238 (354)
T KOG0024|consen 169 KGSKVLVLGAGP--IGLLTGLVAKAMGA-SDVVITDLVANRLELAKK-F---GA--T-VTDPSSHKSSPQELAELVEKAL 238 (354)
T ss_pred cCCeEEEECCcH--HHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH-h---CC--e-EEeeccccccHHHHHHHHHhhc
Confidence 678999999984 44444566666777 5999999998776 4444 2 22 2 222222211111
Q ss_pred CCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 411 APEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 411 ~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
....+|..+. . -...-+++++-..++.+|.++
T Consensus 239 g~~~~d~~~d----C----sG~~~~~~aai~a~r~gGt~v 270 (354)
T KOG0024|consen 239 GKKQPDVTFD----C----SGAEVTIRAAIKATRSGGTVV 270 (354)
T ss_pred cccCCCeEEE----c----cCchHHHHHHHHHhccCCEEE
Confidence 1134777764 1 123457888888899999855
|
|
| >KOG1099|consensus | Back alignment and domain information |
|---|
Probab=90.38 E-value=0.13 Score=51.89 Aligned_cols=116 Identities=20% Similarity=0.227 Sum_probs=71.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhh----c-CCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC------
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKE----A-NRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA------ 411 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~----~-g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~------ 411 (626)
-++|+|+.|-.|.++.-+-+-.-. . .++.+|+|||.-++|-+ . .|.-+++|++....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI----------~--GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI----------E--GVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc----------C--ceEEeecccCCHhHHHHHHH
Confidence 467999999999998754433221 1 12236999999886542 2 38889999987642
Q ss_pred ---CCCccEEEeccc-cccCCCCC---c-HHHHH----HHHHhcccCcEEEeccceeeEEeccChHhHHHHhhhc
Q psy17734 412 ---PEKADIMVSELL-GSFGDNEL---S-PECLY----AAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSM 474 (626)
Q Consensus 412 ---p~k~DiIVSEll-gsfg~~El---~-pe~L~----~~~r~LkpgGi~IP~~~t~y~api~s~~l~~~~~~~~ 474 (626)
.+++|+|||+-. +.-|.++. + .++|- -..+.|||||.++---. ..=..+.||..++.+.
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif----Rg~~tslLysql~~ff 180 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF----RGRDTSLLYSQLRKFF 180 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh----ccCchHHHHHHHHHHh
Confidence 279999999642 33344443 2 22222 23467999999885422 2233445666665543
|
|
| >KOG1269|consensus | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.4 Score=52.16 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++..++|+|||-|..+.....-. + .++++++.|+... .+..........++ -.++.+|.-+-+.+ ..+|.+-
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~---~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k-~~~~~~~~~~~~fedn~fd~v~ 183 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFK---K--AGVVGLDNNAYEAFRANELAKKAYLDNK-CNFVVADFGKMPFEDNTFDGVR 183 (364)
T ss_pred ccccccccCcCcCchhHHHHHhc---c--CCccCCCcCHHHHHHHHHHHHHHHhhhh-cceehhhhhcCCCCccccCcEE
Confidence 45578999999999985422221 2 4899999998544 33333333344444 33366666555443 5788874
Q ss_pred e-ccccccCCCCCc-HHHHHHHHHhcccCcEEEec
Q psy17734 420 S-ELLGSFGDNELS-PECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 S-Ellgsfg~~El~-pe~L~~~~r~LkpgGi~IP~ 452 (626)
+ |..- +... ..++..+.|.+||||..|=.
T Consensus 184 ~ld~~~----~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 184 FLEVVC----HAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred EEeecc----cCCcHHHHHHHHhcccCCCceEEeH
Confidence 4 3222 2222 33677888999999998744
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=89.34 E-value=0.81 Score=51.28 Aligned_cols=99 Identities=15% Similarity=0.171 Sum_probs=59.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-CCCCccEEEe
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-APEKADIMVS 420 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-~p~k~DiIVS 420 (626)
--.|||..||.|.++. |.. . ..|+..-.-|... -++..+-..|+ |-+.+.=.+.+. .|..+|+|=+
T Consensus 366 iRNVMDMnAg~GGFAA----AL~--~--~~VWVMNVVP~~~~ntL~vIydRGL----IG~yhDWCE~fsTYPRTYDLlHA 433 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAA----ALI--D--DPVWVMNVVPVSGPNTLPVIYDRGL----IGVYHDWCEAFSTYPRTYDLLHA 433 (506)
T ss_pred eeeeeeecccccHHHH----Hhc--c--CCceEEEecccCCCCcchhhhhccc----chhccchhhccCCCCcchhheeh
Confidence 4579999999999962 221 2 2455544444321 34444444555 333443333343 3578999977
Q ss_pred ccccccCCC-CCcHHHHHHHHHhcccCcEEEecc
Q psy17734 421 ELLGSFGDN-ELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 421 Ellgsfg~~-El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
.-+-+...+ -.+..+|-+.+|.|+|+|.+|-+.
T Consensus 434 ~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 434 DGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 544333222 225678889999999999988553
|
; GO: 0008168 methyltransferase activity |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.26 E-value=0.68 Score=45.88 Aligned_cols=106 Identities=20% Similarity=0.156 Sum_probs=68.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH------HHHH-HcCCCCCcEEEEEecccccCCCC
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL------KYKK-EEQWAQSDVTIVSEDMRTWNAPE 413 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~------~~~~-~n~~~~~nV~vi~~D~~~~~~p~ 413 (626)
.++.+|+|+=.|.|-++..+..+ .|.+.+||+.-.++....+. ..+. +.... |++++-.+...+..++
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~---vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a--N~e~~~~~~~A~~~pq 121 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPA---VGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA--NVEVIGKPLVALGAPQ 121 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchh---cCCceeEEEecchhhcccccchhhhhhhhhhhhhhh--hhhhhCCcccccCCCC
Confidence 47889999999999998643333 45667999998776533211 1111 12333 6888888888877788
Q ss_pred CccEEEeccccccCCCCCc-----HHHHHHHHHhcccCcEEEe
Q psy17734 414 KADIMVSELLGSFGDNELS-----PECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~-----pe~L~~~~r~LkpgGi~IP 451 (626)
+.|++......+-+.+..+ ..+..++.+.|||||++.-
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V 164 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLV 164 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEE
Confidence 8898866443322222222 2345566788999998653
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.12 E-value=0.73 Score=47.36 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=30.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcC----CccEEEEEeCCHHHH
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEAN----RKVRVYAVEKNMSAV 383 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g----~~~~V~AVE~np~a~ 383 (626)
..+|+++|+|+|.|+.-.+++.+... .+.+++-||.||...
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~ 63 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLR 63 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHH
Confidence 36899999999999988888776442 136999999998665
|
; PDB: 4F3N_A 1ZKD_B. |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.04 E-value=17 Score=40.60 Aligned_cols=86 Identities=16% Similarity=0.199 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
.+++|+.+|+| .++..++..++..|. +|+.+|.++... .+.. ..+ .++. ++.+.- +.+|++|.-
T Consensus 211 ~Gk~VlViG~G--~IG~~vA~~lr~~Ga--~ViV~d~dp~ra--~~A~-~~G-----~~v~--~l~eal--~~aDVVI~a 274 (425)
T PRK05476 211 AGKVVVVAGYG--DVGKGCAQRLRGLGA--RVIVTEVDPICA--LQAA-MDG-----FRVM--TMEEAA--ELGDIFVTA 274 (425)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHhCCC--EEEEEcCCchhh--HHHH-hcC-----CEec--CHHHHH--hCCCEEEEC
Confidence 57899999987 477666777776774 899999997432 1111 122 2222 333332 468999872
Q ss_pred cccccCCCCCcHHHHH-HHHHhcccCcEEEe
Q psy17734 422 LLGSFGDNELSPECLY-AAQKYLKEDGISIP 451 (626)
Q Consensus 422 llgsfg~~El~pe~L~-~~~r~LkpgGi~IP 451 (626)
. ..+.+++ .....+|+|++++=
T Consensus 275 T--------G~~~vI~~~~~~~mK~GailiN 297 (425)
T PRK05476 275 T--------GNKDVITAEHMEAMKDGAILAN 297 (425)
T ss_pred C--------CCHHHHHHHHHhcCCCCCEEEE
Confidence 1 2244665 35567899998873
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=88.74 E-value=0.83 Score=47.75 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=46.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC---CCCccEEEec
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA---PEKADIMVSE 421 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~---p~k~DiIVSE 421 (626)
+|+|+.||.|.++..+.+ +|. ..|+|+|.++.|..+.+. | +. -.++.+|++++.. ..++|+++.-
T Consensus 2 ~v~dLFsG~Gg~~~gl~~----~G~-~~v~a~e~~~~a~~~~~~---N-~~---~~~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEK----AGF-EIVAANEIDKSAAETYEA---N-FP---NKLIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHH----cCC-EEEEEEeCCHHHHHHHHH---h-CC---CCCccCccccCchhhcCCCCCEEEeC
Confidence 589999999999754333 344 378999999988855443 1 12 1267788888763 3579999875
Q ss_pred c
Q psy17734 422 L 422 (626)
Q Consensus 422 l 422 (626)
.
T Consensus 70 p 70 (275)
T cd00315 70 F 70 (275)
T ss_pred C
Confidence 4
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=88.70 E-value=10 Score=38.98 Aligned_cols=95 Identities=19% Similarity=0.147 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---CCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA---PEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~---p~k~Di 417 (626)
.++.||.+|=+- |+..|+.. .+...+|+.+|+++..+ ...+..++.|+ +|+.++.|.|+--+ -++||+
T Consensus 44 ~gk~il~lGDDD--LtSlA~al---~~~~~~I~VvDiDeRll~fI~~~a~~~gl---~i~~~~~DlR~~LP~~~~~~fD~ 115 (243)
T PF01861_consen 44 EGKRILFLGDDD--LTSLALAL---TGLPKRITVVDIDERLLDFINRVAEEEGL---PIEAVHYDLRDPLPEELRGKFDV 115 (243)
T ss_dssp TT-EEEEES-TT---HHHHHHH---HT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS---TTTSS-BSE
T ss_pred cCCEEEEEcCCc--HHHHHHHh---hCCCCeEEEEEcCHHHHHHHHHHHHHcCC---ceEEEEecccccCCHHHhcCCCE
Confidence 578999999554 44322222 22235999999999877 44445556777 49999999998432 279999
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCc
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDG 447 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgG 447 (626)
+++++.-.. |++.-++...-..||..|
T Consensus 116 f~TDPPyT~---~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 116 FFTDPPYTP---EGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp EEE---SSH---HHHHHHHHHHHHTB-STT
T ss_pred EEeCCCCCH---HHHHHHHHHHHHHhCCCC
Confidence 999886322 333345554455677655
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.62 E-value=1.7 Score=44.93 Aligned_cols=94 Identities=19% Similarity=0.128 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec----ccccCCCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED----MRTWNAPEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D----~~~~~~p~k~Di 417 (626)
++.+||..|+ |+++.++++.++..|. .+|++++.++.-.... +..+.. ..+-..+ +.+......+|+
T Consensus 120 ~g~~VlV~G~--G~vG~~~~~~ak~~G~-~~Vi~~~~~~~r~~~a---~~~Ga~---~~i~~~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 120 KGRRVLVVGA--GMLGLTAAAAAAAAGA-ARVVAADPSPDRRELA---LSFGAT---ALAEPEVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHH---HHcCCc---EecCchhhHHHHHHHhCCCCCCE
Confidence 5678999976 5788888888887785 2599999887543221 122321 1111111 111112245898
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
++- ..| .+..+..+.+.|+++|.++--
T Consensus 191 vid-~~G-------~~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 191 ALE-FSG-------ATAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred EEE-CCC-------ChHHHHHHHHHhcCCCEEEEe
Confidence 874 222 245677777889999987743
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair | Back alignment and domain information |
|---|
Probab=88.49 E-value=9.6 Score=39.43 Aligned_cols=162 Identities=12% Similarity=0.135 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHhCCccEEEecCCCcccccccccccccccCCCCcccccCCCCCcCccceEEEecCC-cccccCCccHHHH
Q psy17734 18 YNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLSSICPQWLKLIVCDIQC-KLKDFESKYVERR 96 (626)
Q Consensus 18 ~~~~~~~~~~~~~~~df~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~s~-w~~~~ds~~~~~~ 96 (626)
.++.++++.+.+.|||+|=+++.++......... ......+...+.+-....+....+ ++ .+-++++..|
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~r 80 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSRPLK--------KERAEKFKAIAEEGPSICLSVHAPYLI-NLASPDKEKR 80 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCC--------HHHHHHHHHHHHHcCCCcEEEEcCcee-ccCCCCHHHH
Confidence 5789999999999999998888765321100000 000000111111121112222233 45 7778999999
Q ss_pred HHHHHHHHHHHhhhhhhCCCeEEEcC-CCC------ChhhHHHHHHHHhccCCceEEEEEeeccCCCccccccCCCCCCc
Q psy17734 97 DHAKDLLHQELEYITYLGIPFIVVSL-DQP------DFCNFARTLYAHSEKNMSYTAWIKVPIRPVDTSMLRQQEEEPSS 169 (626)
Q Consensus 97 ~~s~~~l~~e~~~a~~~g~~~~i~~~-~~~------~~~~~ar~~~~~~~~~~~~~~~i~~p~~~~~~~~~~~~~~~~~~ 169 (626)
..+.+.+++=++.|+.+|.+.+++.+ ... ....+.+.+++.........+.+.|--.... ...-.
T Consensus 81 ~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~--------~~~~~ 152 (279)
T cd00019 81 EKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQ--------GNEIG 152 (279)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC--------CCCCC
Confidence 99999999999999999999988843 211 1123455555554433222233333221110 00001
Q ss_pred cchHHHHHHHHHhcCCCCceEEEEEecC
Q psy17734 170 QDTWRWWNMFRSVTNYHSKFELALEING 197 (626)
Q Consensus 170 ~~~w~~W~~~r~~c~~~~~l~v~L~l~~ 197 (626)
.+..+++..+.. |+-++++++.+++..
T Consensus 153 ~t~~~~~~li~~-v~~~~~~g~~lD~~h 179 (279)
T cd00019 153 SSFEELKEIIDL-IKEKPRVGVCIDTCH 179 (279)
T ss_pred CCHHHHHHHHHh-cCCCCCeEEEEEhhh
Confidence 123444444444 434678999999874
|
Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar. |
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=88.17 E-value=4.3 Score=45.46 Aligned_cols=100 Identities=17% Similarity=0.258 Sum_probs=67.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEecc
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSEL 422 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSEl 422 (626)
.+++.+|||--.|...... .|- ..|+.+|.|+-++.+.+...... .. -.++...|+....++ +.||+++-.-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~----~G~-~dI~~iD~S~V~V~~m~~~~~~~-~~-~~~~~~~d~~~l~fedESFdiVIdkG 122 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYK----NGF-EDITNIDSSSVVVAAMQVRNAKE-RP-EMQMVEMDMDQLVFEDESFDIVIDKG 122 (482)
T ss_pred ceeEeecCCCCHHHHHHHh----cCC-CCceeccccHHHHHHHHhccccC-Cc-ceEEEEecchhccCCCcceeEEEecC
Confidence 4899999999988754322 343 48999999997775544333211 12 288899999998875 7899998753
Q ss_pred -ccccCCCCCc-------HHHHHHHHHhcccCcEEE
Q psy17734 423 -LGSFGDNELS-------PECLYAAQKYLKEDGISI 450 (626)
Q Consensus 423 -lgsfg~~El~-------pe~L~~~~r~LkpgGi~I 450 (626)
++.+...|.. ...++.+.|.|++||+.+
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 3333322221 235677889999999854
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=88.13 E-value=2.7 Score=44.99 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeC---CHHHHHHHHHHHHcCCCCCcEEEEEe---cccccCCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEK---NMSAVVGLKYKKEEQWAQSDVTIVSE---DMRTWNAPEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~---np~a~~a~~~~~~n~~~~~nV~vi~~---D~~~~~~p~k~ 415 (626)
++.+||..|+ |.++..+++.++..|+ +|++++. ++.-... .++.|. +.+.. +..+......+
T Consensus 172 ~g~~vlI~G~--G~vG~~a~q~ak~~G~--~vi~~~~~~~~~~~~~~---~~~~Ga-----~~v~~~~~~~~~~~~~~~~ 239 (355)
T cd08230 172 NPRRALVLGA--GPIGLLAALLLRLRGF--EVYVLNRRDPPDPKADI---VEELGA-----TYVNSSKTPVAEVKLVGEF 239 (355)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC--eEEEEecCCCCHHHHHH---HHHcCC-----EEecCCccchhhhhhcCCC
Confidence 4578999986 6788888888887775 8999987 4432211 122222 22211 11111112468
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|+++- ..| .+..+....+.|+++|.++-
T Consensus 240 d~vid-~~g-------~~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 240 DLIIE-ATG-------VPPLAFEALPALAPNGVVIL 267 (355)
T ss_pred CEEEE-CcC-------CHHHHHHHHHHccCCcEEEE
Confidence 88875 222 24467777788999998764
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.40 E-value=4.6 Score=43.12 Aligned_cols=90 Identities=14% Similarity=0.086 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhh-cCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKE-ANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~-~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIV 419 (626)
++.+||.+|| |+++.++++.+++ .|. .+|+++|.++.-. .+++ .+ . +..+. ++.....+|+++
T Consensus 163 ~g~~VlV~G~--G~vGl~~~~~a~~~~g~-~~vi~~~~~~~k~~~a~~----~~---~-~~~~~----~~~~~~g~d~vi 227 (341)
T cd08237 163 DRNVIGVWGD--GNLGYITALLLKQIYPE-SKLVVFGKHQEKLDLFSF----AD---E-TYLID----DIPEDLAVDHAF 227 (341)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHhcCC-CcEEEEeCcHhHHHHHhh----cC---c-eeehh----hhhhccCCcEEE
Confidence 4678999997 6788777776664 343 4899999987433 2221 11 1 21111 111112489887
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|..| ....+..++.+.+.|+++|.++-
T Consensus 228 -D~~G----~~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 228 -ECVG----GRGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred -ECCC----CCccHHHHHHHHHhCcCCcEEEE
Confidence 3333 12235567777789999999873
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >KOG2920|consensus | Back alignment and domain information |
|---|
Probab=86.61 E-value=0.66 Score=48.42 Aligned_cols=36 Identities=14% Similarity=0.057 Sum_probs=26.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHH
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMS 381 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~ 381 (626)
+.+++|||+|||.|..+..+..-+. +.|.+-|.|..
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~-----~~~~fqD~na~ 150 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGA-----VSVHFQDFNAE 150 (282)
T ss_pred ecCceeEecCCcccccchhhhhhcc-----ceeeeEecchh
Confidence 4678999999999999976554442 47777777753
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=86.34 E-value=6.4 Score=41.83 Aligned_cols=88 Identities=14% Similarity=0.012 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
++.+||..|+ |.++.++++.++..|+ +|++++.++.-... .++.|.. . ++.. .+. ..+.+|+++-
T Consensus 165 ~g~~VlV~G~--g~iG~~a~~~a~~~G~--~vi~~~~~~~~~~~---a~~~Ga~---~-vi~~--~~~-~~~~~d~~i~- 229 (329)
T TIGR02822 165 PGGRLGLYGF--GGSAHLTAQVALAQGA--TVHVMTRGAAARRL---ALALGAA---S-AGGA--YDT-PPEPLDAAIL- 229 (329)
T ss_pred CCCEEEEEcC--CHHHHHHHHHHHHCCC--eEEEEeCChHHHHH---HHHhCCc---e-eccc--ccc-CcccceEEEE-
Confidence 5678999997 5678888888887774 79999998754322 2223322 1 1211 111 1245786542
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
. ...+..+....+.|+++|.++-
T Consensus 230 ~-------~~~~~~~~~~~~~l~~~G~~v~ 252 (329)
T TIGR02822 230 F-------APAGGLVPPALEALDRGGVLAV 252 (329)
T ss_pred C-------CCcHHHHHHHHHhhCCCcEEEE
Confidence 1 1223467777788999999764
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=85.78 E-value=4.5 Score=44.94 Aligned_cols=87 Identities=15% Similarity=0.187 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
.+++|+++|+|. ++..++++++..|+ +|+++|.++... .+. ..|. +++ ++++.- ..+|++|.
T Consensus 201 ~GktVvViG~G~--IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~----~~G~-----~~~--~~~e~v--~~aDVVI~ 263 (413)
T cd00401 201 AGKVAVVAGYGD--VGKGCAQSLRGQGA--RVIVTEVDPICALQAA----MEGY-----EVM--TMEEAV--KEGDIFVT 263 (413)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCC--EEEEEECChhhHHHHH----hcCC-----EEc--cHHHHH--cCCCEEEE
Confidence 578999999984 66666777777775 899999997533 222 2232 222 122211 45899986
Q ss_pred ccccccCCCCCcHHHHHHH-HHhcccCcEEEecc
Q psy17734 421 ELLGSFGDNELSPECLYAA-QKYLKEDGISIPYN 453 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~-~r~LkpgGi~IP~~ 453 (626)
- . +.+.++... .+.+|+||+++--.
T Consensus 264 a-t-------G~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 264 T-T-------GNKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred C-C-------CCHHHHHHHHHhcCCCCcEEEEeC
Confidence 2 1 234566554 67899999987443
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >KOG3201|consensus | Back alignment and domain information |
|---|
Probab=85.74 E-value=0.27 Score=47.19 Aligned_cols=101 Identities=17% Similarity=0.155 Sum_probs=57.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH-HHHHHcCCC--CCcEEEEEecccc---cCCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL-KYKKEEQWA--QSDVTIVSEDMRT---WNAPEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~-~~~~~n~~~--~~nV~vi~~D~~~---~~~p~k~ 415 (626)
.+..||++|+|.-.|+- +..|.++. ...|.-.|-|+.++.-. +.+..|... .+ +.++.-+... ......|
T Consensus 29 rg~~ilelgggft~lag--lmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~ts-c~vlrw~~~~aqsq~eq~tF 104 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAG--LMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTS-CCVLRWLIWGAQSQQEQHTF 104 (201)
T ss_pred hHHHHHHhcCchhhhhh--hheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccce-ehhhHHHHhhhHHHHhhCcc
Confidence 34679999999533332 33333333 25888999999887444 444444221 22 3333222111 1122589
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcE
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGI 448 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi 448 (626)
|+|++- +.....|.-....+.+.++|+|.|.
T Consensus 105 DiIlaA--DClFfdE~h~sLvdtIk~lL~p~g~ 135 (201)
T KOG3201|consen 105 DIILAA--DCLFFDEHHESLVDTIKSLLRPSGR 135 (201)
T ss_pred cEEEec--cchhHHHHHHHHHHHHHHHhCcccc
Confidence 999883 1211234345577888999999996
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.70 E-value=1.5 Score=47.15 Aligned_cols=41 Identities=22% Similarity=0.171 Sum_probs=26.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhhcC-CccEEEEEeCCHHHH
Q psy17734 339 ADTVVTTIMVVGAGRGPLVTASLNAAKEAN-RKVRVYAVEKNMSAV 383 (626)
Q Consensus 339 ~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g-~~~~V~AVE~np~a~ 383 (626)
+++..+.+||+|+|.|.-.. |....- .-..++-+|.||...
T Consensus 110 ~dfapqsiLDvG~GPgtgl~----A~n~i~Pdl~sa~ile~sp~lr 151 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLW----ALNDIWPDLKSAVILEASPALR 151 (484)
T ss_pred CCcCcchhhccCCCCchhhh----hhcccCCCchhhhhhccCHHHH
Confidence 56778899999999887542 222110 112678888888554
|
|
| >KOG2793|consensus | Back alignment and domain information |
|---|
Probab=85.46 E-value=4.9 Score=41.51 Aligned_cols=96 Identities=18% Similarity=0.110 Sum_probs=47.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHH--H-HH--HHHHHHcCCCCCcEEEEEeccccc-----CCC
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSA--V-VG--LKYKKEEQWAQSDVTIVSEDMRTW-----NAP 412 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a--~-~a--~~~~~~n~~~~~nV~vi~~D~~~~-----~~p 412 (626)
...||++|+|+|.-+. .|+...+ ..|.--|.-... . .. ..+.+.+..++. |.+..-+=.+- ..+
T Consensus 87 ~~~vlELGsGtglvG~---~aa~~~~--~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~-v~v~~L~Wg~~~~~~~~~~ 160 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGI---LAALLLG--AEVVLTDLPKVVENLKFNRDKNNIALNQLGGS-VIVAILVWGNALDVSFRLP 160 (248)
T ss_pred ceeEEEecCCccHHHH---HHHHHhc--ceeccCCchhhHHHHHHhhhhhhhhhhhcCCc-eeEEEEecCCcccHhhccC
Confidence 4679999999996663 3444334 355555543211 1 11 112223444444 55443322211 112
Q ss_pred CCccEEEeccccccCCCCCcHH-HHHHHHHhcccCc
Q psy17734 413 EKADIMVSELLGSFGDNELSPE-CLYAAQKYLKEDG 447 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe-~L~~~~r~LkpgG 447 (626)
..+|+|++-- .+. .+.+++ .+.....+|..+|
T Consensus 161 ~~~DlilasD--vvy-~~~~~e~Lv~tla~ll~~~~ 193 (248)
T KOG2793|consen 161 NPFDLILASD--VVY-EEESFEGLVKTLAFLLAKDG 193 (248)
T ss_pred CcccEEEEee--eee-cCCcchhHHHHHHHHHhcCC
Confidence 2289988722 232 233444 4455566778888
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=84.60 E-value=14 Score=40.92 Aligned_cols=87 Identities=17% Similarity=0.196 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
.+++|+++|+|. ++..+++.++..|+ +|+++|.+|... .+. ...|. ++. ++++. . .+.|++|+-
T Consensus 194 ~Gk~VvViG~G~--IG~~vA~~ak~~Ga--~ViV~d~dp~r~--~~A-~~~G~-----~v~--~leea-l-~~aDVVIta 257 (406)
T TIGR00936 194 AGKTVVVAGYGW--CGKGIAMRARGMGA--RVIVTEVDPIRA--LEA-AMDGF-----RVM--TMEEA-A-KIGDIFITA 257 (406)
T ss_pred CcCEEEEECCCH--HHHHHHHHHhhCcC--EEEEEeCChhhH--HHH-HhcCC-----EeC--CHHHH-H-hcCCEEEEC
Confidence 578999999875 66666777776774 899999998432 111 12232 222 23332 1 468999872
Q ss_pred cccccCCCCCcHHHHHH-HHHhcccCcEEEec
Q psy17734 422 LLGSFGDNELSPECLYA-AQKYLKEDGISIPY 452 (626)
Q Consensus 422 llgsfg~~El~pe~L~~-~~r~LkpgGi~IP~ 452 (626)
. ..+..+.. ....+|+|++++-.
T Consensus 258 -T-------G~~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 258 -T-------GNKDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred -C-------CCHHHHHHHHHhcCCCCcEEEEE
Confidence 1 12445553 45678999988754
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=84.44 E-value=4.5 Score=43.35 Aligned_cols=93 Identities=18% Similarity=0.165 Sum_probs=56.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccc-------cCCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT-------WNAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~-------~~~p~k 414 (626)
++.+||..|+ |+++.++++.++..|+ .+|++++.++.-....+ ..+- + .++...-.+ ......
T Consensus 176 ~g~~VlV~G~--g~vG~~a~~~ak~~G~-~~Vi~~~~~~~~~~~~~---~~Ga-~---~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 176 RGDSVAVIGC--GGVGDAAIAGAALAGA-SKIIAVDIDDRKLEWAR---EFGA-T---HTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHH---HcCC-c---eEEcCCCcCHHHHHHHHhCCCC
Confidence 5678999985 6888888888887785 26999998875432222 2232 1 222211111 111236
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+|+++- ..| .+..+....+.++++|.++--
T Consensus 246 ~d~vid-~~g-------~~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 246 ADVVID-AVG-------RPETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCEEEE-CCC-------CHHHHHHHHHHhccCCEEEEE
Confidence 898874 332 134556666789999987743
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=84.18 E-value=3.2 Score=43.88 Aligned_cols=94 Identities=20% Similarity=0.205 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec---ccccCCCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED---MRTWNAPEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D---~~~~~~p~k~DiI 418 (626)
++.+||..|+ |.++.++++.++..|++ +|++++.++.-....+ ..+.... +..-..+ +.+......+|++
T Consensus 163 ~g~~vlV~G~--G~vG~~~~~~ak~~G~~-~vi~~~~~~~~~~~~~---~~ga~~~-i~~~~~~~~~~~~~~~~~~~d~v 235 (339)
T cd08239 163 GRDTVLVVGA--GPVGLGALMLARALGAE-DVIGVDPSPERLELAK---ALGADFV-INSGQDDVQEIRELTSGAGADVA 235 (339)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHH---HhCCCEE-EcCCcchHHHHHHHhCCCCCCEE
Confidence 4678999975 67888888888888862 5999998875432222 2232111 1111111 1112122469998
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+- ..| .+..+..+.+.|+++|.++
T Consensus 236 id-~~g-------~~~~~~~~~~~l~~~G~~v 259 (339)
T cd08239 236 IE-CSG-------NTAARRLALEAVRPWGRLV 259 (339)
T ss_pred EE-CCC-------CHHHHHHHHHHhhcCCEEE
Confidence 74 111 2345556667899999877
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=84.14 E-value=8 Score=40.15 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCC-
Q psy17734 316 PIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQW- 394 (626)
Q Consensus 316 ~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~- 394 (626)
..|...+.+++.+++.+ +...|+.+|||-=.-. .+... ..+.+++=||.-.....-.+.+...+.
T Consensus 64 ~~Rtr~~D~~i~~~~~~---------g~~qvV~LGaGlDTr~---~Rl~~--~~~~~~~EvD~P~v~~~K~~~l~~~~~~ 129 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAA---------GIRQVVILGAGLDTRA---YRLPW--PDGTRVFEVDQPAVLAFKEKVLAELGAE 129 (260)
T ss_pred HHHHHHHHHHHHHHHhc---------CCcEEEEeCCccccHH---HhcCC--CCCCeEEECCChHHHHHHHHHHHHcCCC
Confidence 45666666777776643 2346999999965444 23321 112466666655443343444443332
Q ss_pred -CCCcEEEEEecccc-cC--------CCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 395 -AQSDVTIVSEDMRT-WN--------APEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 395 -~~~nV~vi~~D~~~-~~--------~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
.. +++++..|+++ |. .+.+.-++++|-+-.++..+....++..+.+...||+.++-+..
T Consensus 130 ~~~-~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 130 PPA-HRRAVPVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred CCC-ceEEeccCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 34 49999999872 21 02456688888887777776667788888777778888776543
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=84.05 E-value=2.6 Score=39.25 Aligned_cols=58 Identities=21% Similarity=0.039 Sum_probs=26.9
Q ss_pred EEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHH-HHHH--HHHcCCCCCcEEEEEecc
Q psy17734 348 VVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVV-GLKY--KKEEQWAQSDVTIVSEDM 406 (626)
Q Consensus 348 DvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~-a~~~--~~~n~~~~~nV~vi~~D~ 406 (626)
||||+.|.+......+.+..+...+|+++|.+|.... .+++ +..+.-.+. +++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~-~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGE-VEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTT-GGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCce-EEEEEeec
Confidence 8999999443322222123344469999999998763 3333 333433333 55555433
|
; PDB: 2PY6_A. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=82.37 E-value=3.7 Score=44.32 Aligned_cols=92 Identities=21% Similarity=0.181 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc----C--CCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW----N--APEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~----~--~p~k~ 415 (626)
++.+||..|+ |.++.++++.++..|+ .+|++++.++.-....+ ..+.. .++..+-.++ . .+..+
T Consensus 191 ~g~~VlV~G~--G~vG~~a~~lak~~G~-~~Vi~~~~~~~r~~~a~---~~Ga~----~~i~~~~~~~~~~i~~~~~~g~ 260 (371)
T cd08281 191 PGQSVAVVGL--GGVGLSALLGAVAAGA-SQVVAVDLNEDKLALAR---ELGAT----ATVNAGDPNAVEQVRELTGGGV 260 (371)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHH---HcCCc----eEeCCCchhHHHHHHHHhCCCC
Confidence 5678999885 6788888888887775 27999999875432222 22321 1222211111 0 12368
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|+++- ..| .++.+..+.+.|+++|.++-
T Consensus 261 d~vid-~~G-------~~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 261 DYAFE-MAG-------SVPALETAYEITRRGGTTVT 288 (371)
T ss_pred CEEEE-CCC-------ChHHHHHHHHHHhcCCEEEE
Confidence 98874 222 23466666778999998774
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >KOG2078|consensus | Back alignment and domain information |
|---|
Probab=82.09 E-value=0.74 Score=50.46 Aligned_cols=62 Identities=31% Similarity=0.341 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH-HHHHHcCCCCCcEEEEEeccccc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL-KYKKEEQWAQSDVTIVSEDMRTW 409 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~-~~~~~n~~~~~nV~vi~~D~~~~ 409 (626)
.+.+|-|+-||-|+++ +-|+++. ++|||-|.||.++..+ .++..|.....+|++++.|..++
T Consensus 249 ~gevv~D~FaGvGPfa---~Pa~kK~---crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFA---LPAAKKG---CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred CcchhhhhhcCcCccc---cchhhcC---cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 5678999999999998 5666643 5999999999998544 45566777666699999888765
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=81.86 E-value=8.9 Score=40.31 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=51.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEecc
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSEL 422 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEl 422 (626)
+.+|+.+|| |.++.++++.++..|+ ..|+++|.++....... ... ++. ..+. ....+|+++ |.
T Consensus 145 ~~~vlV~G~--G~vG~~a~q~ak~~G~-~~v~~~~~~~~rl~~a~---~~~-------~i~--~~~~-~~~g~Dvvi-d~ 207 (308)
T TIGR01202 145 VLPDLIVGH--GTLGRLLARLTKAAGG-SPPAVWETNPRRRDGAT---GYE-------VLD--PEKD-PRRDYRAIY-DA 207 (308)
T ss_pred CCcEEEECC--CHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHhhh---hcc-------ccC--hhhc-cCCCCCEEE-EC
Confidence 456888875 6788888888887786 25778888764321111 111 111 1110 124689887 33
Q ss_pred ccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 423 LGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 423 lgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.| .+..++.+.+.|+++|.++
T Consensus 208 ~G-------~~~~~~~~~~~l~~~G~iv 228 (308)
T TIGR01202 208 SG-------DPSLIDTLVRRLAKGGEIV 228 (308)
T ss_pred CC-------CHHHHHHHHHhhhcCcEEE
Confidence 33 2446677778899999987
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=81.76 E-value=3.8 Score=43.37 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA------PEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~------p~k 414 (626)
++.+.+|.--|.|.-+...+..... ..+++|+|.+|.|+ .+++..... +++ ++++++...++.. .++
T Consensus 23 ~~giyiD~TlG~GGHS~~iL~~l~~---~~~li~~DrD~~Ai~~a~~~l~~~--~~r-~~~v~~~F~~l~~~l~~~~i~~ 96 (314)
T COG0275 23 PDGIYIDGTLGAGGHSRAILEKLPD---LGRLIGIDRDPQAIAIAKERLKEF--DGR-VTLVHGNFANLAEALKELGIGK 96 (314)
T ss_pred CCcEEEEecCCCcHhHHHHHHhCCC---CCeEEEEcCCHHHHHHHHHHhhcc--CCc-EEEEeCcHHHHHHHHHhcCCCc
Confidence 5579999999999999877765532 24899999999998 555544333 466 9999998877642 257
Q ss_pred ccEEEecc
Q psy17734 415 ADIMVSEL 422 (626)
Q Consensus 415 ~DiIVSEl 422 (626)
+|-|+.+|
T Consensus 97 vDGiL~DL 104 (314)
T COG0275 97 VDGILLDL 104 (314)
T ss_pred eeEEEEec
Confidence 78777654
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=81.53 E-value=6.7 Score=40.54 Aligned_cols=129 Identities=19% Similarity=0.135 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcC-CccEEEEEeCC-----HH--------
Q psy17734 316 PIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEAN-RKVRVYAVEKN-----MS-------- 381 (626)
Q Consensus 316 ~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g-~~~~V~AVE~n-----p~-------- 381 (626)
..|....+.+++..+.+-+ + ..|+++|+-+|.-++++....+..+ .+.+|++.|.= +.
T Consensus 56 ~~Rl~~L~~~~~~v~~~~v-------p-GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~ 127 (248)
T PF05711_consen 56 RERLDNLYQAVEQVLAEDV-------P-GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADK 127 (248)
T ss_dssp HHHHHHHHHHHHHCCHTTS---------SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCC
T ss_pred HHHHHHHHHHHHHHHhcCC-------C-eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccc
Confidence 3444555666666554422 3 3699999999976654333333222 23589988731 00
Q ss_pred ----------HHHHHHHHHH----cCCCCCcEEEEEecccccCCC---CCccEEEeccccccCCCCCcHHHHHHHHHhcc
Q psy17734 382 ----------AVVGLKYKKE----EQWAQSDVTIVSEDMRTWNAP---EKADIMVSELLGSFGDNELSPECLYAAQKYLK 444 (626)
Q Consensus 382 ----------a~~a~~~~~~----n~~~~~nV~vi~~D~~~~~~p---~k~DiIVSEllgsfg~~El~pe~L~~~~r~Lk 444 (626)
....+..++. .++.+.+|++++|...+--.. +++-++--. .-..|..-++|+.+...|.
T Consensus 128 ~~~~~~~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD----~DlYesT~~aLe~lyprl~ 203 (248)
T PF05711_consen 128 GWEFHEYNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLD----CDLYESTKDALEFLYPRLS 203 (248)
T ss_dssp HCTCCGCCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-------SHHHHHHHHHHHGGGEE
T ss_pred hhhhhhcccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEe----ccchHHHHHHHHHHHhhcC
Confidence 0123333333 233223499999998764321 333222111 1112223567888888899
Q ss_pred cCcEEEecccee
Q psy17734 445 EDGISIPYNYTS 456 (626)
Q Consensus 445 pgGi~IP~~~t~ 456 (626)
|||++|-+.|..
T Consensus 204 ~GGiIi~DDY~~ 215 (248)
T PF05711_consen 204 PGGIIIFDDYGH 215 (248)
T ss_dssp EEEEEEESSTTT
T ss_pred CCeEEEEeCCCC
Confidence 999999999877
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=81.34 E-value=5.2 Score=39.98 Aligned_cols=90 Identities=22% Similarity=0.283 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccc------cCCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT------WNAPEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~------~~~p~k~ 415 (626)
++.+||..|+|. ++..+++.++..| .+|++++.++......+. .+.. .++.....+ ......+
T Consensus 134 ~~~~vli~g~~~--~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~---~g~~----~~~~~~~~~~~~~~~~~~~~~~ 202 (271)
T cd05188 134 PGDTVLVLGAGG--VGLLAAQLAKAAG--ARVIVTDRSDEKLELAKE---LGAD----HVIDYKEEDLEEELRLTGGGGA 202 (271)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH---hCCc----eeccCCcCCHHHHHHHhcCCCC
Confidence 567899999886 7766677777777 599999998754322222 2211 112111111 1123579
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|+++... + .+..+....+.|+++|.++
T Consensus 203 d~vi~~~----~----~~~~~~~~~~~l~~~G~~v 229 (271)
T cd05188 203 DVVIDAV----G----GPETLAQALRLLRPGGRIV 229 (271)
T ss_pred CEEEECC----C----CHHHHHHHHHhcccCCEEE
Confidence 9998521 1 1135566667889999877
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.20 E-value=5.5 Score=42.36 Aligned_cols=93 Identities=14% Similarity=0.079 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecc---cc---cCCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDM---RT---WNAPEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~---~~---~~~p~k~ 415 (626)
++.+||..|+ |.++.++++.++..|. ..|++++.++.....++. .+.. .++..+- .+ ......+
T Consensus 160 ~g~~vlV~G~--g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~---~Ga~----~~i~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 160 EGKNVIIIGA--GTIGLLAIQCAVALGA-KSVTAIDINSEKLALAKS---LGAM----QTFNSREMSAPQIQSVLRELRF 229 (347)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH---cCCc----eEecCcccCHHHHHHHhcCCCC
Confidence 5678999975 6798888888888885 258899988754422221 2221 1222111 11 1112467
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|.+|-|..|. +..+....+.|+++|.++-
T Consensus 230 d~~v~d~~G~-------~~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 230 DQLILETAGV-------PQTVELAIEIAGPRAQLAL 258 (347)
T ss_pred CeEEEECCCC-------HHHHHHHHHHhhcCCEEEE
Confidence 8555554431 3456666788999998764
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=80.80 E-value=10 Score=41.05 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec-----c----cccCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED-----M----RTWNAP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D-----~----~~~~~p 412 (626)
++.+||..|+ |+++.++++.++..|+ .+|++++.++.-....+ .-+.. . ++..+ . .++..
T Consensus 198 ~g~~VlV~G~--G~vG~~a~q~ak~~G~-~~Vi~~~~~~~r~~~a~---~~Ga~---~-~i~~~~~~~~~~~~v~~~~~- 266 (381)
T PLN02740 198 AGSSVAIFGL--GAVGLAVAEGARARGA-SKIIGVDINPEKFEKGK---EMGIT---D-FINPKDSDKPVHERIREMTG- 266 (381)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHCCC-CcEEEEcCChHHHHHHH---HcCCc---E-EEecccccchHHHHHHHHhC-
Confidence 5678999986 7899988999988885 37999999875432222 22321 2 22211 1 11111
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccC-cEEEe
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKED-GISIP 451 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~Lkpg-Gi~IP 451 (626)
..+|+++- ..| .+..+..+.+.++++ |.++-
T Consensus 267 ~g~dvvid-~~G-------~~~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 267 GGVDYSFE-CAG-------NVEVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred CCCCEEEE-CCC-------ChHHHHHHHHhhhcCCCEEEE
Confidence 26898865 212 244566666778886 87653
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=80.36 E-value=3 Score=43.68 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=45.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC---CCCccEEEec
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA---PEKADIMVSE 421 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~---p~k~DiIVSE 421 (626)
+++|+-||-|.++.-+-+| |. ..|.|+|.++.|..+.+... . .++.+|++++.. +..+|+++.-
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a----g~-~~~~a~e~~~~a~~~y~~N~-------~-~~~~~Di~~~~~~~l~~~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA----GF-EVVWAVEIDPDACETYKANF-------P-EVICGDITEIDPSDLPKDVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT----TE-EEEEEEESSHHHHHHHHHHH-------T-EEEESHGGGCHHHHHHHT-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhc----Cc-EEEEEeecCHHHHHhhhhcc-------c-ccccccccccccccccccceEEEec
Confidence 6899999999998643333 33 38999999999885544321 2 778899999863 3369999875
Q ss_pred c
Q psy17734 422 L 422 (626)
Q Consensus 422 l 422 (626)
+
T Consensus 69 p 69 (335)
T PF00145_consen 69 P 69 (335)
T ss_dssp -
T ss_pred c
Confidence 4
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 626 | ||||
| 4gqb_A | 637 | Crystal Structure Of The Human Prmt5:mep50 Complex | 1e-153 | ||
| 4g56_A | 657 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 1e-148 | ||
| 3ua4_A | 745 | Crystal Structure Of Protein Arginine Methyltransfe | 2e-71 | ||
| 3ua3_A | 745 | Crystal Structure Of Protein Arginine Methyltransfe | 6e-69 | ||
| 2v74_B | 346 | Crystal Structure Of Coactivator-Associated Arginin | 1e-04 | ||
| 3b3j_A | 480 | The 2.55 A Crystal Structure Of The Apo Catalytic D | 1e-04 | ||
| 3b3f_A | 341 | The 2.2 A Crystal Structure Of The Catalytic Domain | 1e-04 | ||
| 4ikp_A | 341 | Crystal Structure Of Coactivator-associated Arginin | 1e-04 | ||
| 2y1w_A | 348 | Crystal Structure Of Coactivator Associated Arginin | 2e-04 | ||
| 4hc4_A | 376 | Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 ( | 3e-04 |
| >pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 637 | Back alignment and structure |
|
| >pdb|4G56|A Chain A, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 657 | Back alignment and structure |
|
| >pdb|3UA4|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase Prmt5 Length = 745 | Back alignment and structure |
|
| >pdb|3UA3|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase Prmt5 In Complex With Sah Length = 745 | Back alignment and structure |
|
| >pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine Methyltransferase 1 (Carm1), In Complex With S-Adenosyl- Homocysteine Length = 346 | Back alignment and structure |
|
| >pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain Of Coactivator-Associated Arginine Methyl Transferase I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered) Length = 480 | Back alignment and structure |
|
| >pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of Coactivator- Associated Arginine Methyl Transferase I(Carm1,142-478), In Complex With S-Adenosyl Homocysteine Length = 341 | Back alignment and structure |
|
| >pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine Methyltransferase 1 Length = 341 | Back alignment and structure |
|
| >pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine Methyltransferase 1 (Carm1) In Complex With Sinefungin And Indole Inhibitor Length = 348 | Back alignment and structure |
|
| >pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S. Cerevisiae) Length = 376 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 626 | |||
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 1e-156 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 3e-58 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 1e-57 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 1e-42 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 4e-39 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 1e-37 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 9e-29 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-08 |
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A Length = 745 | Back alignment and structure |
|---|
Score = 465 bits (1197), Expect = e-156
Identities = 199/681 (29%), Positives = 303/681 (44%), Gaps = 89/681 (13%)
Query: 18 YNIQSQIESLAAECFDYAVLPLVHPRFARHK----DVDRYRVFGLPEAQVQSLSSICPQW 73
++ + L +++ V P+ A + V LP+ Q+++ W
Sbjct: 68 RHVATFCTRLGEFKYNFVVYPIGGVVRAFWTPNGSAENHPPVIDLPDVQLRN-----DLW 122
Query: 74 LKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDFCNFART 133
+V I + D +S +++ L +EL YI YLG+ + + L + A
Sbjct: 123 ESYVVGKISPWI-DCDSSDPAFASLSEEHLLKELSYICYLGLQTMAIELTRISSPRTAAI 181
Query: 134 LYAH-SEKNMSYTAWIKVPIRPVDTSMLRQQEEEPSSQDTWRWWNMFRSVTNYHS--KFE 190
L +N +T W+++P D W W FR S F+
Sbjct: 182 LKKWIWTRNSRFTVWVQLPS--AIEKCKDYDAFTIEHVDLWTIWADFRKNCGNFSGVYFQ 239
Query: 191 LALEINGDICDD----HELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLANFIKKILE 246
+AL I+ ++ D+ + RW EPL I + +F + + G + ++ N +K +
Sbjct: 240 VALTISSELPDELTELKLVDRWKAEPLAAFVIESGLFISGRNGEASIPSAHINLLKHLWT 299
Query: 247 KNLQVVIQGVNRH------QSYLHYVQYMQYLKK-----------SSHSDDPLSMAAQDF 289
+ ++ Y Q +++ + +D + ++
Sbjct: 300 TDALRIVLRATTDTFKYNTSIKSEYSQALRHAVRNVNYRSRPDVGEGSNDSTHYLNVIEY 359
Query: 290 EDYLQFPLQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVV 349
+D LQ PLQPL+ +L S Y FE+D IKY Y EAV AL D + + V+ ++
Sbjct: 360 KDVLQAPLQPLSENLDSGVYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVI---YLL 416
Query: 350 GAGRGPLVTASLNAAKEANR---------KVRVYAVEKNMSAVVGLKYKKEEQWAQSDVT 400
G GRGP+ T L + +E N KV++Y VEKN +A+V LKY W + VT
Sbjct: 417 GGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTW-KRRVT 475
Query: 401 IVSEDMRTWNAP------EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454
I+ DMR+ E+ DI+VSELLGSFGDNELSPECL +LK ISIP Y
Sbjct: 476 IIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIPQKY 535
Query: 455 TSYIAPIMSHKLFTQVKSSMIKEHQ--------------------------HPLYRFEQP 488
TSY+ PIMS + +K+ I H +Q
Sbjct: 536 TSYVKPIMSTHIHQTIKAQSIPYLSRAIPSHGRGEPELDEDEMWIQKYPQGHVRNNMDQI 595
Query: 489 YVVYQRNKYNIAP-PQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGYFDTFLY 547
YVVY +A +P FTF HP+ + N R F+ ++++ L G AGYFD LY
Sbjct: 596 YVVYLSKYIPLAETTKPVFTFEHPNFM-NSSNERSDSIEFVMDRNADLMGFAGYFDLQLY 654
Query: 548 KDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNVKVWYEWLVTK- 606
K + LSI P T +PG++SWFP + P+ + +++ D I + R DN VWYEW V K
Sbjct: 655 KTVMLSIEPSTHTPGMVSWFPAVIPLRDQLRVGEGDRISLKIDRKVDNTGVWYEWHVEKK 714
Query: 607 -----PTPSPIYNLDGRSYKM 622
+PI N +G SY M
Sbjct: 715 KTNGESVSTPIQNPNGESYYM 735
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348 | Back alignment and structure |
|---|
Score = 198 bits (504), Expect = 3e-58
Identities = 66/333 (19%), Positives = 117/333 (35%), Gaps = 34/333 (10%)
Query: 309 YEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEAN 368
+ +D ++ YQ A+ Q D D +V + VG G G L S AA+
Sbjct: 25 QQNMMQDYVRTGTYQRAILQNHTDF-----KDKIV---LDVGCGSGIL---SFFAAQAGA 73
Query: 369 RKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGD 428
RK+ YAVE + A K + ++ + + PE+ DI++SE +G
Sbjct: 74 RKI--YAVEASTMAQHAEVLVKSNNLTD-RIVVIPGKVEEVSLPEQVDIIISEPMGYMLF 130
Query: 429 NELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIKEHQHPLY----- 483
NE E A+KYLK G P ++AP +L+ + + +Q +
Sbjct: 131 NERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLS 190
Query: 484 ---------RFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSV 534
F QP V + + +T + + F +
Sbjct: 191 ALRGAAVDEYFRQPVVDTFDIRI-LMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGL 249
Query: 535 LHGIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCD 594
+HG+A +FD I + L W+ V P+ K D + + +
Sbjct: 250 VHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIAN 309
Query: 595 -----NVKVWYEWLVTKPTPSPIYNLDGRSYKM 622
++ + + T S + +L ++
Sbjct: 310 KRQSYDISIVAQVDQTGSKSSNLLDLKNPFFRY 342
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480 | Back alignment and structure |
|---|
Score = 200 bits (510), Expect = 1e-57
Identities = 74/382 (19%), Positives = 130/382 (34%), Gaps = 46/382 (12%)
Query: 265 YVQYMQYLKKSSHSDDPLSMAAQ-----DFEDYLQFPLQPLANDLSSFTYEVFEKDPIKY 319
+ + LK S+ ++ Y QF LS + +D ++
Sbjct: 91 FCSFYNILKTCRGHTLERSVFSERTEESSAVQYFQF-----YGYLSQ--QQNMMQDYVRT 143
Query: 320 IRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN 379
YQ A+ Q D D +V + VG G G L S AA+ RK+ YAVE +
Sbjct: 144 GTYQRAILQNHTDF-----KDKIV---LDVGCGSGIL---SFFAAQAGARKI--YAVEAS 190
Query: 380 MSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAA 439
A K + ++ + + PE+ DI++SE +G NE E A
Sbjct: 191 TMAQHAEVLVKSNNLTD-RIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHA 249
Query: 440 QKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIKEHQHPLY--------------RF 485
+KYLK G P ++AP +L+ + + +Q + F
Sbjct: 250 KKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYF 309
Query: 486 EQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGYFDTF 545
QP V + + +T + + F ++HG+A +FD
Sbjct: 310 RQPVVDTFDIRI-LMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVA 368
Query: 546 LYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCD-----NVKVWY 600
I + L W+ V P+ K D + + + ++ +
Sbjct: 369 FIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVA 428
Query: 601 EWLVTKPTPSPIYNLDGRSYKM 622
+ T S + +L ++
Sbjct: 429 QVDQTGSKSSNLLDLKNPFFRY 450
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 1e-42
Identities = 60/290 (20%), Positives = 105/290 (36%), Gaps = 23/290 (7%)
Query: 309 YEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEAN 368
+E KD I+ Y++ + Q D VV + VG G G L S+ AAK
Sbjct: 39 HEEMLKDKIRTESYRDFIYQNPHIF-----KDKVV---LDVGCGTGIL---SMFAAKAGA 87
Query: 369 RKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELLGSFG 427
+KV V+++ + + + +T++ + + P EK D+++SE +G F
Sbjct: 88 KKV--LGVDQSEILYQAMDIIRLNKLE-DTITLIKGKIEEVHLPVEKVDVIISEWMGYFL 144
Query: 428 DNE-LSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSM-----IKEHQHP 481
E + LYA KYL + G P T + + + K
Sbjct: 145 LFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMK 204
Query: 482 LYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGY 541
+ V K I+ P D + T + S+ IAGY
Sbjct: 205 KAVIPEAVVEVLDPKTLISEPCGIKHI-DCHTTSISDLEFSSDFTLKITRTSMCTAIAGY 263
Query: 542 FDTFLYKDINLSIHPDTLSPGLIS-WFPVLFPIHEPIQLKTNDEIEVHFW 590
FD + K+ + + T + W +F + +P +K + ++
Sbjct: 264 FDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVT 313
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349 | Back alignment and structure |
|---|
Score = 146 bits (369), Expect = 4e-39
Identities = 57/289 (19%), Positives = 102/289 (35%), Gaps = 22/289 (7%)
Query: 309 YEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEAN 368
+E KD ++ + Y+ ++ D VV + VG+G G L + AAK
Sbjct: 41 HEELLKDEVRTLTYRNSMFHNRHLF-----KDKVV---LDVGSGTGIL---CMFAAKAGA 89
Query: 369 RKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELLGSFG 427
RKV +E + + +K K + VTI+ + P EK DI++SE +G
Sbjct: 90 RKV--IGIECSSISDYAVKIVKANKL-DHVVTIIKGKVEEVELPVEKVDIIISEWMGYCL 146
Query: 428 DNELS-PECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSM-----IKEHQHP 481
E L+A K+L DG+ P T Y+ I +
Sbjct: 147 FYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIK 206
Query: 482 LYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGY 541
++P V K + K D + + +++ +H + Y
Sbjct: 207 DVAIKEPLVDVVDPKQLVTNACLIKEVDI-YTVKVEDLTFTSPFCLQVKRNDYVHALVAY 265
Query: 542 FDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFW 590
F+ + + + W +F + + + +KT +EI
Sbjct: 266 FNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIG 314
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376 | Back alignment and structure |
|---|
Score = 143 bits (360), Expect = 1e-37
Identities = 61/373 (16%), Positives = 118/373 (31%), Gaps = 61/373 (16%)
Query: 296 PLQPLANDLSSF-TYEVFE------KDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMV 348
P+ + F TY D ++ Y AV Q + T++
Sbjct: 18 PVDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQN--------KHHFEGKTVLD 69
Query: 349 VGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT 408
VG G G L S A +VYAVE A K V ++ +
Sbjct: 70 VGTGSGILAIWSAQAGAR-----KVYAVEATKMADHARALVKANNL-DHIVEVIEGSVED 123
Query: 409 WNAPEKADIMVSELLGSFGDNE-LSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKL- 466
+ PEK D+++SE +G F E + + A ++LK G+ P + ++API S+
Sbjct: 124 ISLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIAD 183
Query: 467 ----------------------FTQVKSSMIKE---HQHPLYRFEQPYVVYQRNKYNIAP 501
+ V ++ + + Y + + I
Sbjct: 184 RKRNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGT 243
Query: 502 PQPCFTFVHPSEDK-DPDNSRYTKATFIAEQDSVLHGIAGYFDTFLYKDINLSIHPDTL- 559
P + + + R + I + + L G G+FD +
Sbjct: 244 PTIVKEMDCLTASVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIEL 303
Query: 560 -----SPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCD-----NVKVWYEWLVTKPTP 609
W +F + PI ++ D + + +++ + + +
Sbjct: 304 TTAPSEQHCTHWGQQVFIMSNPINVEEGDNLNLGLLMSRSKENHRLMEIELNCEIKEASG 363
Query: 610 SPIYNLDGRSYKM 622
+P + ++Y +
Sbjct: 364 NPKESF-KKTYFI 375
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Length = 328 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 9e-29
Identities = 59/333 (17%), Positives = 116/333 (34%), Gaps = 37/333 (11%)
Query: 309 YEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEAN 368
+E +D ++ + Y+ A+ Q + ++ VG G G L S+ AAK
Sbjct: 13 HEEMLQDTVRTLSYRNAIIQN--------KDLFKDKIVLDVGCGTGIL---SMFAAKHGA 61
Query: 369 RKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELLGSFG 427
+ V V+ + + + + + +T++ + + P K DI++SE +G F
Sbjct: 62 KHV--IGVDMSSIIEMAKELVELNGF-SDKITLLRGKLEDVHLPFPKVDIIISEWMGYFL 118
Query: 428 DNE-LSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSM-----IKEHQHP 481
E + LYA YL E G+ P + ++A + + + +
Sbjct: 119 LYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFV 178
Query: 482 LYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGY 541
+P V F + K D + + A++ +++GI +
Sbjct: 179 PLVLHEPIVDTVERNNVNTTSDKLIEFDL-NTVKISDLAFKSNFKLTAKRQDMINGIVTW 237
Query: 542 FDTFL-----YKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHF------- 589
FD + + S P W +F + + +T D IE
Sbjct: 238 FDIVFPAPKGKRPVEFSTGP---HAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEK 294
Query: 590 WRLCDNVKVWYEWLVTKPTPSPIYNLDGRSYKM 622
N+K+ Y++ + + SY M
Sbjct: 295 NNRDLNIKISYKFESNGIDGNSRSRKNEGSYLM 327
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 4e-11
Identities = 78/572 (13%), Positives = 182/572 (31%), Gaps = 163/572 (28%)
Query: 85 LKDFESKYVERRDHAKDLL-HQELEYITYLGIPFIVVSLDQPDFCNFARTLY---AHSEK 140
+ +F+ K V+ D K +L +E+++I + D + L+ ++
Sbjct: 30 VDNFDCKDVQ--DMPKSILSKEEIDHI-----------IMSKDAVSGTLRLFWTLLSKQE 76
Query: 141 NMSYTA----------WIKVPIR--PVDTSMLRQQEEEPSSQDTWRWWNMFRSVTNYH-S 187
M ++ PI+ SM+ + E R +N + Y+ S
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD----RLYNDNQVFAKYNVS 132
Query: 188 KFELALEINGDICDDHELTRWLGE--PLRCVFIPTH-VFQTNKAGYPVLNASLANFIKKI 244
+ + +L + L E P + V I V + K + + K
Sbjct: 133 RLQPY----------LKLRQALLELRPAKNVLI--DGVLGSGKT---WVALDVCLSYKVQ 177
Query: 245 LEKNLQVVIQGVNRHQSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFPLQPLANDL 304
+ + ++ ++ K+ +S + + Q + ++
Sbjct: 178 CKMDFKI------------FWLNL-----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 305 SSFTYEVFE-KDPIKYIRYQEAVQQAL--LDRV-SPEQAD-------TVVTTIMVVGAGR 353
S+ + + ++ + + + L L V + + + ++TT R
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT-------R 273
Query: 354 GPLVTASLNAAKEANRKVRVYAVEKNM---------SAVVGLKYKKE-EQWAQSD---VT 400
VT L+AA + + + + + + + ++ ++
Sbjct: 274 FKQVTDFLSAATT--THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 401 IVSEDMR----TWNAPEKADIM-VSELLGSFGDNELSPECLYAAQKYLKE-----DGISI 450
I++E +R TW+ + + ++ ++ S + L P +K I
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-LEPAEY---RKMFDRLSVFPPSAHI 387
Query: 451 P--------YNYTSYIAPIMSHKLFTQVKSSMIKEHQ-------HPLY-----RFEQPYV 490
P ++ ++ +KL K S++++ +Y + E Y
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKL---HKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 491 VYQR--NKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFI---------AEQDSVLHGIA 539
+++ + YNI + P D+ Y + I E+ ++ +
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQ------YF-YSHIGHHLKNIEHPERMTLFRMV- 496
Query: 540 GYFD-TFLYKDINLSIHPDTLSPGLISWFPVL 570
+ D FL + I H T S L
Sbjct: 497 -FLDFRFLEQKI---RHDSTAWNASGSILNTL 524
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 1e-08
Identities = 91/612 (14%), Positives = 178/612 (29%), Gaps = 178/612 (29%)
Query: 2 SQAKIAVSVGLE--YP---TCYNIQSQIESLAAECFDYAVLPL--VHPRFARHKDVDRYR 54
+ V L Y + + + S+ + L + FA++ +V R +
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQ 135
Query: 55 VF-----GLPEAQVQSLSSIC------PQWLKLIVC---DIQCKLKDFESKYVE-RRDHA 99
+ L E + I W+ L VC +QCK+ DF+ ++ + ++
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM-DFKIFWLNLKNCNS 194
Query: 100 KDLLHQELEYITYLGIPFIVVSLDQPDFCNFARTLYAHSEKNMSYTAWIKVPIRPVDTSM 159
+ + + L+ + Y +D P++ + + HS I+ +R
Sbjct: 195 PETVLEMLQKLLYQ--------ID-PNWTSRSD----HSSNIKLRIHSIQAELR-----R 236
Query: 160 LRQQEEEPSS----QDTWRW--WNMF------------RSVTNYHS---KFELALEINGD 198
L + + + + WN F + VT++ S ++L+ +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 199 ICDDHE----LTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLANFIKKILEKNLQVVIQ 254
E L ++L + +P V TN P + +A I+
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQD--LPREVLTTN----PRRLSIIAESIR-----------D 339
Query: 255 GVNRHQSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFP-LQPLANDLSSFTYEVFE 313
G+ ++ H + D L+ + + L+ + + + LS VF
Sbjct: 340 GLATWDNWKHV------------NCDKLTTIIESSLNVLEPAEYRKMFDRLS-----VFP 382
Query: 314 KD-PIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVR 372
I + + V VV L SL + +
Sbjct: 383 PSAHIP-----TILLSLIWFDVIKSDVMVVVNK----------LHKYSLVEKQPKESTIS 427
Query: 373 VYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELS 432
+ ++ L+ K + + N +V
Sbjct: 428 IPSIY--------LELKVKLE----------------NEYALHRSIVDH----------- 452
Query: 433 PECLYAAQKYLKEDGISIPY--NYT-SYIAPIMSHKLFTQVKSSMIKEHQHPLYRFEQPY 489
Y K D + PY Y S+I H L EH + F +
Sbjct: 453 ----YNIPKTFDSDDLIPPYLDQYFYSHIG----HHLKN-------IEHPERMTLFRMVF 497
Query: 490 VVYQ--RNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGYFDTFLY 547
+ ++ K I + + Y +I + D + FL
Sbjct: 498 LDFRFLEQK--IRHDSTAWNASGSILNTLQQLKFYKP--YICDNDPKYERLVNAILDFLP 553
Query: 548 K-DINLSIHPDT 558
K + NL T
Sbjct: 554 KIEENLICSKYT 565
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 626 | |||
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 100.0 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 100.0 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 100.0 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 100.0 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 100.0 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 100.0 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 100.0 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 100.0 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 100.0 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.42 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.25 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.24 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.22 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.21 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.17 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.17 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.16 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.16 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.15 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.15 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.15 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.15 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.15 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.15 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.14 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.14 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.14 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.14 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.14 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.14 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.13 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.13 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.12 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.12 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.12 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.11 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.11 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.11 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.11 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.1 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.1 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.1 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.1 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.09 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.09 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.09 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.09 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.09 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.07 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.07 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.06 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.06 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.05 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.05 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.05 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.05 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.05 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.05 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.05 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.04 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.04 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.04 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.04 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.04 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.03 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.03 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.03 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.02 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.02 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.02 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.02 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.02 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.02 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.01 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.01 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.01 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.01 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.01 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.01 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.01 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.01 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.01 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.01 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.01 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.0 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.0 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 98.99 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.99 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 98.99 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 98.99 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.99 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.98 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.98 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 98.98 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 98.98 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.98 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.97 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.97 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.97 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.96 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.96 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.96 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 98.96 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.96 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.95 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.95 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 98.95 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 98.94 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.94 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.94 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.94 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.94 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 98.93 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 98.93 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.93 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.92 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.92 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.92 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.92 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.91 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.91 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.91 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.91 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.91 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.9 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.9 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.9 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.9 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.9 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.9 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.89 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.89 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.89 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 98.88 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.88 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.88 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.88 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.88 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.88 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.88 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 98.87 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.87 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.87 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.87 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.87 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.87 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.87 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 98.86 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.86 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.86 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.85 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.85 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.85 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.85 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.84 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.84 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.84 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 98.84 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.84 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.84 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.84 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.83 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.83 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.83 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.83 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.83 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.83 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.83 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.83 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.82 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.82 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.81 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.81 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.81 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.81 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.81 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.8 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.79 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.79 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.79 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.79 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.79 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.78 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.78 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.78 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.77 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.77 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.77 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.77 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.76 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.75 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.75 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.75 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.74 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.74 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.73 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.73 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.72 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.71 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.71 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.7 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.7 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.7 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.7 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.7 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.7 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.7 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.68 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.68 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.68 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.68 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.68 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.67 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.67 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.66 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.66 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.65 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.65 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.65 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.63 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.63 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.63 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.63 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.62 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.6 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.59 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.58 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.58 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.56 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.56 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.56 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.55 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.55 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.55 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.54 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.54 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.53 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.52 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.5 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.5 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.48 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.48 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.47 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.47 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.46 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.46 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.46 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.43 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.41 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.41 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.4 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.4 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.39 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.39 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.39 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.36 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.36 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.36 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.34 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.34 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.27 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.25 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.23 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.22 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.21 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.14 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.1 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.06 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.02 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.97 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.95 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.91 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.87 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.86 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.84 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.83 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 97.79 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.76 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.67 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 97.57 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.45 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.36 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.36 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.35 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.31 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.28 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.23 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.2 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.03 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 96.92 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.74 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.6 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 96.47 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 96.38 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.35 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 96.3 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.25 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 96.15 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 95.77 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 95.07 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.05 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 94.85 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 94.48 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 94.43 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 94.24 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 93.41 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 93.27 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 92.92 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 92.75 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 92.51 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 92.42 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 91.8 | |
| 1qtw_A | 285 | Endonuclease IV; DNA repair enzyme, TIM barrel, tr | 91.67 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 91.61 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 91.18 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 91.08 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 90.84 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 90.77 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 90.72 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 90.32 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 90.14 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 90.12 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 90.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 89.88 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 89.74 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 89.74 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 89.74 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 89.66 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 89.42 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 89.28 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 89.18 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 89.12 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 88.74 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 88.72 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 88.71 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 88.52 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 88.14 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 87.82 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 87.23 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 87.17 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 87.17 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 87.15 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 87.04 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 86.9 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 86.88 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 86.72 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 86.52 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 86.48 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 86.44 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 86.2 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 85.62 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 85.58 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 85.57 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 85.16 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 85.16 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 84.9 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 84.45 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 83.83 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 83.74 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 83.38 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 82.87 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 82.87 | |
| 3aal_A | 303 | Probable endonuclease 4; endoiv, DNA repair, base | 82.73 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 82.71 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 82.69 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 82.66 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 82.64 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 82.55 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 82.5 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 82.49 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 82.39 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 82.29 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 81.98 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 81.96 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 81.46 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 81.3 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 80.88 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 80.53 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 80.41 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 80.09 |
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-158 Score=1335.95 Aligned_cols=615 Identities=46% Similarity=0.813 Sum_probs=575.2
Q ss_pred cCCCeeEEeecCCCCCCHHHHHHHHHhCCccEEEecCCCcccccccccccccccCCCCccccc---CCCCCcCccceEEE
Q psy17734 3 QAKIAVSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQS---LSSICPQWLKLIVC 79 (626)
Q Consensus 3 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~df~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~v~ 79 (626)
+..++++||+++++++|+.++++.|.+.|||||++||||||||+++.+. ..+.+++|++++ |++ .+|+++|||
T Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~a~~~g~d~v~~pi~~~~~~~~~~~~--~~~~~~~p~~~~d~~l~~--~~~~~~vvg 84 (637)
T 4gqb_A 9 AGGSRVSSGRDLNCVPEIADTLGAVAKQGFDFLCMPVFHPRFKREFIQE--PAKNRPGPQTRSDLLLSG--RDWNTLIVG 84 (637)
T ss_dssp ----CCCEEEECSCCSSHHHHHHHHHHTTCSEEEEESSCTTCCCCSSST--TGGGCCSCSSCCGGGSCH--HHHHHHEEE
T ss_pred CCCCceEEEeeccCCccHHHHHHHHHHCCCCEEEeccCChhhhhHHhhc--ccccCCCCCCccceeeCc--ccccceEEE
Confidence 4568999999999999999999999999999999999999999998654 455678899998 888 999999999
Q ss_pred ecCCcccccCCccHHHHHHHHHHHHHHHhhhhhhCCCeEEEcCCCCChhhHHHHHHHHhccC-CceEEEEEeeccCCCc-
Q psy17734 80 DIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDFCNFARTLYAHSEKN-MSYTAWIKVPIRPVDT- 157 (626)
Q Consensus 80 ~~s~w~~~~ds~~~~~~~~s~~~l~~e~~~a~~~g~~~~i~~~~~~~~~~~ar~~~~~~~~~-~~~~~~i~~p~~~~~~- 157 (626)
++|+|| ||||+|+.+|+.|+++|++||+||+|||+++||||+++.+++||||+|++.+.++ ...++||+|||+.+..
T Consensus 85 ~~S~wi-~~ds~~~~~~~~s~~~l~~El~~a~~~g~~~~iip~~~~~~~~~ar~i~~~l~~~~~~~~~~i~~p~~~~~~~ 163 (637)
T 4gqb_A 85 KLSPWI-RPDSKVEKIRRNSEAAMLQELNFGAYLGLPAFLLPLNQEDNTNLARVLTNHIHTGHHSSMFWMRVPLVAPEDL 163 (637)
T ss_dssp ECCTTC-CTTCSSHHHHHHHHHHHHHHHHHHHHHTCSEEEEECCSSCCHHHHHHHHHHHTSSCCCCEEEEEEESSCHHHH
T ss_pred EECCCc-CCCCCCHHHHHHHHHHHHHHHHHHhhcCCCEEEECCCCccchHHHHHHHHHHhcCCCceeEEEEEEccCCccc
Confidence 999999 9999999999999999999999999999999999988889999999999999887 5567999999997611
Q ss_pred -ccc------ccCCCCCCccchHHHHHHHHHhcCCCCceEEEEEecCCCCCHhHHhHhhcccceEEEecccccccCCCCC
Q psy17734 158 -SML------RQQEEEPSSQDTWRWWNMFRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGY 230 (626)
Q Consensus 158 -~~~------~~~~~~~~~~~~w~~W~~~r~~c~~~~~l~v~L~l~~~~p~~~~~~rW~~EPv~~~~i~~~~f~~n~~g~ 230 (626)
+.. ....+.++..++|++||+||++|+||++|+|+|+||+++|+.++++||+||||+|++||+++|++|++||
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~W~~W~~~r~~c~~~~~l~v~L~l~~~~p~~~~~~rW~~EPv~~l~i~~~~F~~n~~g~ 243 (637)
T 4gqb_A 164 RDDIIENAPTTHTEEYSGEEKTWMWWHNFRTLCDYSKRIAVALEIGADLPSNHVIDRWLGEPIKAAILPTSIFLTNKKGF 243 (637)
T ss_dssp CCSCBTTSCCCCSCCTTGGGHHHHHHHHHHHHTTTCTTEEEEEECCSSCCCHHHHHTTTTSCEEEEEEEGGGCEECTTSC
T ss_pred cccccccccccccccccCcccHHHHHHHHHHHhCCCCceEEEEEcCCCCCCHHHHHHHhcCCeeEEEEchhhcccCCCCC
Confidence 111 1112334556899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHhHHHHHHHHHHhcceEEEEcccCC--CChhhHHHHHHHHHhcCCCCChhhhhhhchhhhhcCCCcchhhcchhhH
Q psy17734 231 PVLNASLANFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFPLQPLANDLSSFT 308 (626)
Q Consensus 231 pvL~k~~q~~i~~~~~~~~~~~l~~~~~~--~~~~~y~~yl~~l~~~~~~~~~~~~~~~~y~d~lq~PLqpl~dnL~s~t 308 (626)
|||+|+||+||++||++++++||+|.+++ ++..+|++||+||++++|+.+.+|.|+.+|+|+||.|||||+|||+|.|
T Consensus 244 pvL~k~hq~~i~~~~~~~~~~il~~~~~~~~~~~~~y~~yl~~l~~~~~~~~~~e~~~~~y~D~Lq~PLQPl~dnL~s~t 323 (637)
T 4gqb_A 244 PVLSKMHQRLIFRLLKLEVQFIITGTNHHSEKEFCSYLQYLEYLSQNRPPPNAYELFAKGYEDYLQSPLQPLMDNLESQT 323 (637)
T ss_dssp EECCHHHHHHHHHHHHTTCEEEEESCCSSGGGCSTHHHHHHHHHHHSSCCCCHHHHHSTTCBTCCBEECCTTTSCCCHHH
T ss_pred cCCCHHHHHHHHHHHhCCCeEEEecCCccCccChHHHHHHHHHHHHhCCCCCHHHHhcccccccccCcCcchhhhhhhhh
Confidence 99999999999999999999999999877 7888999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHH
Q psy17734 309 YEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKY 388 (626)
Q Consensus 309 Ye~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~ 388 (626)
||+||+|++||++|++||.+|+.|++.+.....++++|||||||||+|++++++|+++.+++++|||||+||+|..+++.
T Consensus 324 YevFEkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~ 403 (637)
T 4gqb_A 324 YEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLEN 403 (637)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHH
T ss_pred hhhhcCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHH
Confidence 99999999999999999999999988776666677899999999999999999999998877899999999999999999
Q ss_pred HHHcCCCCCcEEEEEecccccCCCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEeccChHhHH
Q psy17734 389 KKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFT 468 (626)
Q Consensus 389 ~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l~~ 468 (626)
++.|+|+++ |++|++||+++++|+|+|||||||||+|+++|+|++||++++|+|||||++||++|++|++||+++++|+
T Consensus 404 v~~N~~~dk-VtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimiPs~atlyiapi~~~~l~~ 482 (637)
T 4gqb_A 404 WQFEEWGSQ-VTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYN 482 (637)
T ss_dssp HHHHTTGGG-EEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEESCEEEEEEEEEECHHHHH
T ss_pred HHhccCCCe-EEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEccccceEEEEEecCHHHHH
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccCCCcccCCCCcEEEEecCccccCCCeeEEEeeCCCCCCCCCCceeeEEEEEEeeCceEEEEEEEEEEEecC
Q psy17734 469 QVKSSMIKEHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGYFDTFLYK 548 (626)
Q Consensus 469 ~~~~~~~~fd~~~~~~~e~P~vv~l~~~~~Ls~p~~~~tFd~p~~~~~~~~~r~~~~~f~i~~~g~~hGf~~wFd~~L~~ 548 (626)
++..+|.. +......|++|||+.+.+.+.|++|+++|+|+|++.....++.|+..++|+++++|++|||+||||++|++
T Consensus 483 e~~~~~~~-~~~~~~~~~~p~Vv~~~~~~~Ls~p~~~~~fd~~~~~~~~~~~~~~~~~f~i~~~g~vhGf~~wFD~~f~~ 561 (637)
T 4gqb_A 483 EVRACREK-DRDPEAQFEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLHGFAGYFETVLYQ 561 (637)
T ss_dssp HHHTTCCT-TSCTTGGGGSCEECBCCSCEECSCCEEEEEEESSCCSTTCCCCEEEEEEEECCSCEEEEEEEEEEEEEEET
T ss_pred HHHhcccc-cccchhhcCCcEEEEecCccccCCCEEEEEEECCCCCccccceEEEEEEEEecCCcEEEEEEEEEEEEeeC
Confidence 99888765 44445678999999999999999999999999999876778889999999999999999999999999999
Q ss_pred ceEEecCCCCCCCCCccceeEEEecCCceeeCCCCEEEEEEEEEecCceEEEEEEEecCCCCceecCCCceEEeee
Q psy17734 549 DINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNVKVWYEWLVTKPTPSPIYNLDGRSYKMMK 624 (626)
Q Consensus 549 ~v~lSt~P~t~s~~m~sW~q~~fpL~~Pi~V~~Gd~i~v~~~R~~d~~~VWyEW~~~~p~~~~i~n~~G~~~~i~l 624 (626)
+|.|||+|.+|+++|+||+|++|||++|+.|++||+|+++|||++|++||||||+++.|..++|||+|||||+|||
T Consensus 562 ~V~LST~P~~~s~~~THW~Q~vfpL~~Pl~V~~Gd~I~~~~~R~~d~~kVWYEW~v~~p~~s~ihN~~Gr~y~i~l 637 (637)
T 4gqb_A 562 DITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNSKKVWYEWAVTAPVCSAIHNPTGRSYTIGL 637 (637)
T ss_dssp TEEEECSGGGCCTTCCSCCCEEEEEEEEEEECTTCEEEEEEEEEECSSEEEEEEEEEESSCCCCBSGGGSSCCEEC
T ss_pred CeEEECCCCCCCCCCCcccCeEEEeCCCeEECCCCEEEEEEEEEeCCCceeEEEEEeCCcCccccCCCCceeeecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-150 Score=1265.46 Aligned_cols=610 Identities=33% Similarity=0.546 Sum_probs=538.9
Q ss_pred cCCCeeEEee---cCCCCC----CHHHHHHHHHhCCccEEEecCCCcccccccccccccccCCCCccccc---CCCCCcC
Q psy17734 3 QAKIAVSVGL---EYPTCY----NIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQS---LSSICPQ 72 (626)
Q Consensus 3 ~~~~~~~~g~---~~~~~~----~~~~~~~~~~~~~~df~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~ 72 (626)
++++++.||| .++... ++....+++.+.|||||++||+|| +|++...+.+.+..++||++| |++ .+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~~pi~~~--~r~~~~~~~~~~~~~~~~~~~d~~l~~--~~ 121 (745)
T 3ua3_A 46 AANSRIHIGWMATTLDVAENLDRHVATFCTRLGEFKYNFVVYPIGGV--VRAFWTPNGSAENHPPVIDLPDVQLRN--DL 121 (745)
T ss_dssp --CTTCCEEEECCTTSCCTTTTTTHHHHHHHHHHTTCCCEECBTTCH--HHHTCCCCSCTTCCCCCCCCCSTTSCH--HH
T ss_pred hccceeEEEEecccccccccccccHHHHHHHHHhCCCCEEEeecCCC--cccccccccccccCCCCCCHHHcccCh--hh
Confidence 5678999999 334433 577788899999999999999999 677766444566778999999 888 99
Q ss_pred ccceEEEecCCcccccCCccHHHHHHHHHHHHHHHhhhhhhCCCeEEEcCCCCChhhHHHHHHHHhccC-CceEEEEEee
Q psy17734 73 WLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDFCNFARTLYAHSEKN-MSYTAWIKVP 151 (626)
Q Consensus 73 ~~~~~v~~~s~w~~~~ds~~~~~~~~s~~~l~~e~~~a~~~g~~~~i~~~~~~~~~~~ar~~~~~~~~~-~~~~~~i~~p 151 (626)
|+++|||++|+|| ||||+|+.+|+.|+++|++||+||+|||++++|||+++.+++||||+|++++++. +++++||+||
T Consensus 122 w~~~vig~~S~Wi-dldS~d~~~~~~S~~~L~~El~yA~~lg~~~viip~~~~~~~~yAr~i~~~l~~~~~~~~~~i~lP 200 (745)
T 3ua3_A 122 WESYVVGKISPWI-DCDSSDPAFASLSEEHLLKELSYICYLGLQTMAIELTRISSPRTAAILKKWIWTRNSRFTVWVQLP 200 (745)
T ss_dssp HHHTBCEECCTTC-CTTCSSHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCSSCCHHHHHHHHHHHHHCSCCCEEEEECC
T ss_pred ccceEEEEecCcc-cCCCCCHHHHHHHHHHHHHHHHHHHHcCCceEEEecCccccHHHHHHHHHHHhcCCCceEEEEEee
Confidence 9999999999999 9999999999999999999999999999999999998889999999999999995 8999999999
Q ss_pred ccCC-CccccccCCCCCCccchHHHHHHHHHhc-CC-CCceEEEEEecCCCCCH----hHHhHhhcccceEEEecccccc
Q psy17734 152 IRPV-DTSMLRQQEEEPSSQDTWRWWNMFRSVT-NY-HSKFELALEINGDICDD----HELTRWLGEPLRCVFIPTHVFQ 224 (626)
Q Consensus 152 ~~~~-~~~~~~~~~~~~~~~~~w~~W~~~r~~c-~~-~~~l~v~L~l~~~~p~~----~~~~rW~~EPv~~~~i~~~~f~ 224 (626)
|+.+ ..+ .+++.++..++|++||+||++| +| |++|+|+|+|++++|+. ++++||+||||+|++|++++|+
T Consensus 201 ~~~e~~~~---~~~~~~~~~~~W~~Wn~iR~~C~~y~~~~L~vaL~l~~~lp~~~~~~~~~~RW~~EPv~~l~i~~s~F~ 277 (745)
T 3ua3_A 201 SAIEKCKD---YDAFTIEHVDLWTIWADFRKNCGNFSGVYFQVALTISSELPDELTELKLVDRWKAEPLAAFVIESGLFI 277 (745)
T ss_dssp SSGGGSTT---CCTTTCSSCCHHHHHHHHHHHTTCCCTTTEEEEEEECSSCCGGGTSHHHHTGGGGTTEEEEEEESCCCC
T ss_pred ccccCccc---cccccccccCHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCccccchhHHHHHhcCCceEEEecHHHhh
Confidence 9953 111 0123345568999999999999 99 99999999999999999 9999999999999999999999
Q ss_pred cCCCCCccCCHhHHHHHHHHHHhcce-EEEEccc---CC--CChhhHHHHHHHHHhcCC----------CCChhh-hhhh
Q psy17734 225 TNKAGYPVLNASLANFIKKILEKNLQ-VVIQGVN---RH--QSYLHYVQYMQYLKKSSH----------SDDPLS-MAAQ 287 (626)
Q Consensus 225 ~n~~g~pvL~k~~q~~i~~~~~~~~~-~~l~~~~---~~--~~~~~y~~yl~~l~~~~~----------~~~~~~-~~~~ 287 (626)
+|++|||||+|+||+||++||++++| +||+|.. ++ ++...|++||+||+++++ +.+.+| .|+.
T Consensus 278 tN~~GyPvL~k~hQ~li~~~~~~~~~~iil~~~~~~~~~~~~~~~~Y~~Yl~~L~~~~~~~~~~~~~~~~~~~~e~~~~~ 357 (745)
T 3ua3_A 278 SGRNGEASIPSAHINLLKHLWTTDALRIVLRATTDTFKYNTSIKSEYSQALRHAVRNVNYRSRPDVGEGSNDSTHYLNVI 357 (745)
T ss_dssp CSTTTCCCCCHHHHHHHHHSCCSSCCEEEEECCSCCCTTTSCSHHHHHHHHHTTTC------------------------
T ss_pred cCCCCCccCCHHHHHHHHHHHhcCCceEEEECCcccccccccchHHHHHHHHHHHHcCCcccccccccCCCchhhhhccc
Confidence 99999999999999999999999999 9999976 44 578999999999999999 778888 8999
Q ss_pred chhhhhcCCCcchhhcchhhHHHHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhc
Q psy17734 288 DFEDYLQFPLQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEA 367 (626)
Q Consensus 288 ~y~d~lq~PLqpl~dnL~s~tYe~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~ 367 (626)
+|+|+||.|||||+|||+|.||+.||+|++||++|++||.+++.++..+ ..++++|||||||||+|++++++|++.+
T Consensus 358 ~y~D~LQ~PLQPL~dNLes~tYe~fekD~vRy~~Y~~AI~~al~d~~~~---~~~~~VVldVGaGtGpLs~~al~A~~~a 434 (745)
T 3ua3_A 358 EYKDVLQAPLQPLSENLDSGVYNTFEQDQIKYDVYGEAVVGALKDLGAD---GRKTVVIYLLGGGRGPIGTKILKSEREY 434 (745)
T ss_dssp ----CEECCCCTTTSCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT---CCSEEEEEEESCTTCHHHHHHHHHHHHH
T ss_pred CccccccCCCCcchhccchHHHHHHcCChhhHHHHHHHHHHHHHHhhcc---cCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999886532 1245799999999999999999998765
Q ss_pred C---------CccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC------CCCccEEEeccccccCCCCCc
Q psy17734 368 N---------RKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA------PEKADIMVSELLGSFGDNELS 432 (626)
Q Consensus 368 g---------~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~------p~k~DiIVSEllgsfg~~El~ 432 (626)
| ++++|||||+|++|..+++.++.|+|+++ |++|++||+++++ ++++|+|||||||+||++|++
T Consensus 435 ~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~-VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~ 513 (745)
T 3ua3_A 435 NNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRR-VTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELS 513 (745)
T ss_dssp HHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTC-SEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSH
T ss_pred CccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCe-EEEEeCchhhcccccccCCCCcccEEEEeccccccchhcc
Confidence 5 45799999999999988888888999999 9999999999988 799999999999999999999
Q ss_pred HHHHHHHHHhcccCcEEEeccceeeEEeccChHhHHHHhhhccc-----c-----CC----------------CcccCCC
Q psy17734 433 PECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIK-----E-----HQ----------------HPLYRFE 486 (626)
Q Consensus 433 pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l~~~~~~~~~~-----f-----d~----------------~~~~~~e 486 (626)
+|||++++|+|||||++||++|++|++||+++++|+++.+++.. | ++ ....+|+
T Consensus 514 pe~Ld~v~r~Lkp~Gi~iP~~~t~ylaPi~~~~l~~~v~~~~~~~~~~G~p~~g~~~P~~~~~g~~i~~~~~~~~~~a~e 593 (745)
T 3ua3_A 514 PECLDGVTGFLKPTTISIPQKYTSYVKPIMSTHIHQTIKAQSIPYLSRAIPSHGRGEPELDEDEMWIQKYPQGHVRNNMD 593 (745)
T ss_dssp HHHHHTTGGGSCTTCEEESCEEEEEEEEEECHHHHHHHHTCCCCGGGTTSCCSSSCCCEECTTSCEECCCTTCHHHHHHS
T ss_pred HHHHHHHHHhCCCCcEEECCccEEEEEEecCHHHHHHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999875421 1 00 1234689
Q ss_pred CcEEEEecCccccCC-CeeEEEeeCCCCCCCCCCceeeEEEEEEeeCceEEEEEEEEEEEecCceEEecCCCCCCCCCcc
Q psy17734 487 QPYVVYQRNKYNIAP-PQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGYFDTFLYKDINLSIHPDTLSPGLIS 565 (626)
Q Consensus 487 ~P~vv~l~~~~~Ls~-p~~~~tFd~p~~~~~~~~~r~~~~~f~i~~~g~~hGf~~wFd~~L~~~v~lSt~P~t~s~~m~s 565 (626)
+|||+.+.++++|++ |+++|+|+||+.. +.+++|++.++|+++++|.+|||+||||++||++|.|||+|.+|+++|+|
T Consensus 594 ~PyVv~l~~~~~Ls~~pq~vftFdhp~~~-~~d~~r~~~~~F~~~r~g~iHGfagwFDi~Lyk~V~LST~P~t~s~~mTh 672 (745)
T 3ua3_A 594 QIYVVYLSKYIPLAETTKPVFTFEHPNFM-NSSNERSDSIEFVMDRNADLMGFAGYFDLQLYKTVMLSIEPSTHTPGMVS 672 (745)
T ss_dssp SCEEECCCSCEESSSSCEEEEEEESSCTT-CCCSCEEEEEEEECCSSEEEEEEEEEEEEEEETTEEEECSSTTCCTTCCS
T ss_pred ccEEEeeccceecCCCCceEEEEECCCCC-ccccceeEEEEEEeCCCcEEEEEEEEEEEEecCCcEEecCCCCCCCCCcc
Confidence 999999999999999 9999999999984 57889999999999999999999999999999999999999999999999
Q ss_pred ceeEEEecCCceeeCCCCEEEEEEEEEecCceEEEEEEEe------cCCCCceecCCCceEEeeec
Q psy17734 566 WFPVLFPIHEPIQLKTNDEIEVHFWRLCDNVKVWYEWLVT------KPTPSPIYNLDGRSYKMMKI 625 (626)
Q Consensus 566 W~q~~fpL~~Pi~V~~Gd~i~v~~~R~~d~~~VWyEW~~~------~p~~~~i~n~~G~~~~i~l~ 625 (626)
|||+||||++|+.|++|++|+++|||++|+.||||||+++ +|.+|+|||+|||||+||+.
T Consensus 673 WfQtfFPL~ePL~V~~GdeI~g~~~R~~d~~kVWYEW~v~~~~~~g~p~~~~ihN~~G~sy~~~~~ 738 (745)
T 3ua3_A 673 WFPAVIPLRDQLRVGEGDRISLKIDRKVDNTGVWYEWHVEKKKTNGESVSTPIQNPNGESYYMRML 738 (745)
T ss_dssp CCCEEEEEEEEEEECTTCEEEEEEEEEEETTEEEEEEEEEEECTTSCEEECCCBSGGGSSCCEEC-
T ss_pred ceeEEEecCCceEeCCCCEEEEEEEEEcCCCCEEEEEEEEeccCCCCccccccCCCCCcEEeecch
Confidence 9999999999999999999999999999999999999999 99999999999999999974
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=427.37 Aligned_cols=282 Identities=21% Similarity=0.206 Sum_probs=239.0
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHH
Q psy17734 308 TYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLK 387 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~ 387 (626)
.++.|++|.+|+.+|++||.++... +++++|||||||||+|+++|++|++ .+|||||.|+++..|++
T Consensus 57 iH~~ML~D~~Rt~aY~~Ai~~~~~~--------~~~k~VLDvG~GtGiLs~~Aa~aGA-----~~V~ave~s~~~~~a~~ 123 (376)
T 4hc4_A 57 VHEEMIADRVRTDAYRLGILRNWAA--------LRGKTVLDVGAGTGILSIFCAQAGA-----RRVYAVEASAIWQQARE 123 (376)
T ss_dssp HHHHHHHCHHHHHHHHHHHHTTHHH--------HTTCEEEEETCTTSHHHHHHHHTTC-----SEEEEEECSTTHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhCHHh--------cCCCEEEEeCCCccHHHHHHHHhCC-----CEEEEEeChHHHHHHHH
Confidence 5788999999999999999887654 2678999999999999987665543 49999999998889999
Q ss_pred HHHHcCCCCCcEEEEEecccccCCCCCccEEEeccccccCCCCCc-HHHHHHHHHhcccCcEEEeccceeeEEeccChHh
Q psy17734 388 YKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELS-PECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKL 466 (626)
Q Consensus 388 ~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~El~-pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l 466 (626)
.++.|++.++ |+++++|++++.+|+++|+||||+||+++.+|.+ ++++++++|+|||||++||+++|+|++||+++.+
T Consensus 124 ~~~~n~~~~~-i~~i~~~~~~~~lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~atly~apie~~~l 202 (376)
T 4hc4_A 124 VVRFNGLEDR-VHVLPGPVETVELPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVPISDQML 202 (376)
T ss_dssp HHHHTTCTTT-EEEEESCTTTCCCSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHH
T ss_pred HHHHcCCCce-EEEEeeeeeeecCCccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCccceEEEEEeccchh
Confidence 9999999998 9999999999999999999999999999999985 8899999999999999999999999999999877
Q ss_pred HHHHhhhcc-----ccCCCccc--------CCCCcEEEEecCccccCCCeeEEEeeCCCCCCC--CCCceeeEEEEEEee
Q psy17734 467 FTQVKSSMI-----KEHQHPLY--------RFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKD--PDNSRYTKATFIAEQ 531 (626)
Q Consensus 467 ~~~~~~~~~-----~fd~~~~~--------~~e~P~vv~l~~~~~Ls~p~~~~tFd~p~~~~~--~~~~r~~~~~f~i~~ 531 (626)
+..+..+.. .||++... ...+|+|..+.+.++|++|+++++||+.+.... .+..+...+++++.+
T Consensus 203 ~~~i~~w~~v~~~yGfd~s~~~~~~~~~~~~~~e~~v~~~~~~~~Ls~p~~i~~~D~~~~~~~~~~~~~~~~~f~~~~~~ 282 (376)
T 4hc4_A 203 EWRLGFWSQVKQHYGVDMSCLEGFATRCLMGHSEIVVQGLSGEDVLARPQRFAQLELSRAGLEQELEAGVGGRFRCSCYG 282 (376)
T ss_dssp HHHHHGGGGHHHHHSCCCGGGHHHHHHHHHSSCEEEEECCCGGGBCSCCEEEEEEETTCTTHHHHHHHCEEEEEEEECCS
T ss_pred hhhhcchhccccccCcCchhhhhhhhhhhcccCceEEEeecccccccCCEEEEEEECCCCCccccccccceeEEEEEecC
Confidence 665432211 14665321 235788888999999999999999999875311 123456788999999
Q ss_pred CceEEEEEEEEEEEecC-----ceEEecCCCCCCCCCccceeEEEecCCceeeCCCCEEEEEEEEEecCc-----eEEEE
Q psy17734 532 DSVLHGIAGYFDTFLYK-----DINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNV-----KVWYE 601 (626)
Q Consensus 532 ~g~~hGf~~wFd~~L~~-----~v~lSt~P~t~s~~m~sW~q~~fpL~~Pi~V~~Gd~i~v~~~R~~d~~-----~VWyE 601 (626)
+|.+|||++||++.|++ .|.|||+|... .+||+|++|||++|+.|++|++|++++....+.. .|..+
T Consensus 283 ~g~vhg~~~WFd~~f~~~~~~~~v~lST~P~~~---~THW~Q~v~~L~~Pi~V~~G~~I~g~i~~~~~~~n~R~~~i~i~ 359 (376)
T 4hc4_A 283 SAPMHGFAIWFQVTFPGGESEKPLVLSTSPFHP---ATHWKQALLYLNEPVQVEQDTDVSGEITLLPSRDNPRRLRVLLR 359 (376)
T ss_dssp SEEEEEEEEEEEEEECCCC--CCEEEECCTTSC---CCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCTTSEEEEEE
T ss_pred CcEEEEEEEEEEEEecCCCCCCceEEeCCCCcC---CCceeeEEEEeCCceEeCCCCEEEEEEEEEECCCCCceeEEEEE
Confidence 99999999999999974 48999999532 4689999999999999999999999998666532 68899
Q ss_pred EEEec
Q psy17734 602 WLVTK 606 (626)
Q Consensus 602 W~~~~ 606 (626)
|.+.+
T Consensus 360 ~~~~~ 364 (376)
T 4hc4_A 360 YKVGD 364 (376)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 99875
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=360.61 Aligned_cols=296 Identities=18% Similarity=0.183 Sum_probs=248.4
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHH
Q psy17734 308 TYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLK 387 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~ 387 (626)
.++.|.+|..|+..|+++|.+.... .++.+|||||||+|.++..++++ |. .+|+|||.|+++..+++
T Consensus 40 ~~~~~l~d~~r~~~~~~~i~~~~~~--------~~~~~VLDvGcG~G~~~~~la~~----g~-~~v~gvD~s~~l~~a~~ 106 (349)
T 3q7e_A 40 IHEELLKDEVRTLTYRNSMFHNRHL--------FKDKVVLDVGSGTGILCMFAAKA----GA-RKVIGIECSSISDYAVK 106 (349)
T ss_dssp HHHHHHHCHHHHHHHHHHHHTCHHH--------HTTCEEEEESCTTSHHHHHHHHT----TC-SEEEEEECSTHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcccc--------CCCCEEEEEeccchHHHHHHHHC----CC-CEEEEECcHHHHHHHHH
Confidence 4577899999999999999875443 15689999999999998755443 32 49999999975558888
Q ss_pred HHHHcCCCCCcEEEEEecccccCCC-CCccEEEeccccccCCCCCc-HHHHHHHHHhcccCcEEEeccceeeEEeccChH
Q psy17734 388 YKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELLGSFGDNELS-PECLYAAQKYLKEDGISIPYNYTSYIAPIMSHK 465 (626)
Q Consensus 388 ~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSEllgsfg~~El~-pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~ 465 (626)
+.+.+++.++ |+++++|+++++.+ ++||+|+|+++++++.++.. +.++.++.++|||||++||+.++.|++|++++.
T Consensus 107 ~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~ 185 (349)
T 3q7e_A 107 IVKANKLDHV-VTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQ 185 (349)
T ss_dssp HHHHTTCTTT-EEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHH
T ss_pred HHHHcCCCCc-EEEEECcHHHccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccccceEEEeeecChh
Confidence 8888999887 99999999999876 89999999999998877765 678899999999999999999999999999999
Q ss_pred hHHHHhhhccc---cCCCc--ccCCCCcEEEEecCccccCCCeeEEEeeCCCCCCCCCCceeeEEEEEEeeCceEEEEEE
Q psy17734 466 LFTQVKSSMIK---EHQHP--LYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAG 540 (626)
Q Consensus 466 l~~~~~~~~~~---fd~~~--~~~~e~P~vv~l~~~~~Ls~p~~~~tFd~p~~~~~~~~~r~~~~~f~i~~~g~~hGf~~ 540 (626)
++.+...+|.. ||++. ...+++|+++.+.+..++++|+.+++|++.+.. ..++.+...++|+++++|.+|||++
T Consensus 186 ~~~~~~~~w~~~~G~d~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~dl~~~~-~~~l~~~~~~~~~~~~~~~~~g~~~ 264 (349)
T 3q7e_A 186 YKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVK-VEDLTFTSPFCLQVKRNDYVHALVA 264 (349)
T ss_dssp HHHHHTGGGGCBTTBCCGGGHHHHHTSCEEECCCGGGEEEEEEEEEEEETTTCC-GGGGSEEEEEEEEBCSSEEEEEEEE
T ss_pred hhhhhhcccccccCcchHHHhHhhhcCcEEEEEChhhEecccEEEEEEEcccCc-hhhcceeeeEEEEEccCCEEEEEEE
Confidence 98877777764 56654 235789999999999999999999999999863 4567788899999999999999999
Q ss_pred EEEEEecC---ceEEecCCCCCCCCCccceeEEEecCCceeeCCCCEEEEEEEEEecC---ceEEEEEEEec-CCCCcee
Q psy17734 541 YFDTFLYK---DINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDN---VKVWYEWLVTK-PTPSPIY 613 (626)
Q Consensus 541 wFd~~L~~---~v~lSt~P~t~s~~m~sW~q~~fpL~~Pi~V~~Gd~i~v~~~R~~d~---~~VWyEW~~~~-p~~~~i~ 613 (626)
|||+.|++ +|.|||+|.+. ++||+|++|||++|+.|++|++|+++++++.+. +.+++++.+.- .....+
T Consensus 265 ~Fd~~~~~~~~~v~lst~P~~~---~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~- 340 (349)
T 3q7e_A 265 YFNIEFTRCHKRTGFSTSPESP---YTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQLCEL- 340 (349)
T ss_dssp EEEEECTTSSSCCEEECSTTSC---CCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCSSCEEEEEEEEEECSSCEE-
T ss_pred EEEEEecCCCCccEEECCCCcC---CCcceeEEEEECCceEeCCCCEEEEEEEEEECCCCCeeEEEEEEEEeCCccccc-
Confidence 99999998 89999999753 789999999999999999999999999987654 56777777642 122233
Q ss_pred cCCCceEEee
Q psy17734 614 NLDGRSYKMM 623 (626)
Q Consensus 614 n~~G~~~~i~ 623 (626)
.++.+|.|+
T Consensus 341 -~~~~~~~~~ 349 (349)
T 3q7e_A 341 -SCSTDYRMR 349 (349)
T ss_dssp -EEEEEEEEC
T ss_pred -ccCceEecC
Confidence 345667663
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-41 Score=353.32 Aligned_cols=279 Identities=18% Similarity=0.225 Sum_probs=235.8
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHH
Q psy17734 308 TYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLK 387 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~ 387 (626)
.++.|++|..|+..|+++|.+.+... ++.+|||+|||+|.+++.++++ |. .+|+|||.++++..+++
T Consensus 12 ~~~~ml~d~~r~~~y~~ai~~~~~~~--------~~~~VLDiGcGtG~ls~~la~~----g~-~~v~~vD~s~~~~~a~~ 78 (328)
T 1g6q_1 12 IHEEMLQDTVRTLSYRNAIIQNKDLF--------KDKIVLDVGCGTGILSMFAAKH----GA-KHVIGVDMSSIIEMAKE 78 (328)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHH--------TTCEEEEETCTTSHHHHHHHHT----CC-SEEEEEESSTHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhhHhhc--------CCCEEEEecCccHHHHHHHHHC----CC-CEEEEEChHHHHHHHHH
Confidence 56789999999999999998776542 5679999999999999654433 32 49999999976568888
Q ss_pred HHHHcCCCCCcEEEEEecccccCCC-CCccEEEeccccccCCCCCc-HHHHHHHHHhcccCcEEEeccceeeEEeccChH
Q psy17734 388 YKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELLGSFGDNELS-PECLYAAQKYLKEDGISIPYNYTSYIAPIMSHK 465 (626)
Q Consensus 388 ~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSEllgsfg~~El~-pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~ 465 (626)
.++.+++.++ |+++.+|++++..+ +++|+|+|+++++++.++.. +.++.++.++|||||+++|+.+++|+++++++.
T Consensus 79 ~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~ 157 (328)
T 1g6q_1 79 LVELNGFSDK-ITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQ 157 (328)
T ss_dssp HHHHTTCTTT-EEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHH
T ss_pred HHHHcCCCCC-EEEEECchhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEeeceEEEEEecCch
Confidence 8888999887 99999999999876 79999999999988888776 678899999999999999999999999999998
Q ss_pred hHHHHhhhccc---cCCCc--ccCCCCcEEEEecCccccCCCeeEEEeeCCCCCCCCCCceeeEEEEEEeeCceEEEEEE
Q psy17734 466 LFTQVKSSMIK---EHQHP--LYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAG 540 (626)
Q Consensus 466 l~~~~~~~~~~---fd~~~--~~~~e~P~vv~l~~~~~Ls~p~~~~tFd~p~~~~~~~~~r~~~~~f~i~~~g~~hGf~~ 540 (626)
++.+...+|.. |++.. ....++|+|..+.+..+|++|+++++|||++.. ..++++...++|+++++|.+|||++
T Consensus 158 ~~~~~~~~w~~~~gf~~~~~~~~~~~~~~v~~~~~~~~ls~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~ 236 (328)
T 1g6q_1 158 YKDEKLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVK-ISDLAFKSNFKLTAKRQDMINGIVT 236 (328)
T ss_dssp HHHHHHHHTTCBTTBCCTTHHHHHTTSCEEECCCGGGBCBCCEEEEEEETTTCC-GGGGSEEEEEEEEBCSSCEEEEEEE
T ss_pred hhhhhhcccccccCcChHHHhhhhhcCCeEEEeccceeecCCEEEEEEECCCCC-hhHhceeeeEEEEEecCcEEEEEEE
Confidence 87766555643 34432 224678999999999999999999999999873 4566788899999999999999999
Q ss_pred EEEEEecC-----ceEEecCCCCCCCCCccceeEEEecCCceeeCCCCEEEEEEEEEecCc-eEEEEEEE
Q psy17734 541 YFDTFLYK-----DINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNV-KVWYEWLV 604 (626)
Q Consensus 541 wFd~~L~~-----~v~lSt~P~t~s~~m~sW~q~~fpL~~Pi~V~~Gd~i~v~~~R~~d~~-~VWyEW~~ 604 (626)
|||++|++ ++.|||+|.++ ++||+|++|||++|+.|++|++|++++++..+.. .-++++.+
T Consensus 237 wfd~~~~~~~~~~~v~lst~P~~~---~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~ 303 (328)
T 1g6q_1 237 WFDIVFPAPKGKRPVEFSTGPHAP---YTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKI 303 (328)
T ss_dssp EEEEECCCCTTSCCCEEECSTTSC---CCTTCEEEEEEEEEEECCTTCEEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEcCCCCCCCceEEECCCCcC---CCcceeEEEEeCCceecCCCCEEEEEEEEEECCCCCceEEEEE
Confidence 99999998 89999999754 6899999999999999999999999998877653 33444433
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=345.78 Aligned_cols=281 Identities=19% Similarity=0.200 Sum_probs=237.4
Q ss_pred hHHHHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH
Q psy17734 307 FTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL 386 (626)
Q Consensus 307 ~tYe~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~ 386 (626)
..+..|++|..|+..|+++|.+.+.. .++.+|||||||+|.+++.++++ |. .+|+|||.++++..++
T Consensus 37 ~~~~~ml~d~~r~~~~~~~i~~~~~~--------~~~~~VLDiGcGtG~ls~~la~~----g~-~~v~gvD~s~~~~~a~ 103 (340)
T 2fyt_A 37 GIHEEMLKDKIRTESYRDFIYQNPHI--------FKDKVVLDVGCGTGILSMFAAKA----GA-KKVLGVDQSEILYQAM 103 (340)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHCGGG--------TTTCEEEEETCTTSHHHHHHHHT----TC-SEEEEEESSTHHHHHH
T ss_pred hHHHHHhcCHHHHHHHHHHHHhhhhh--------cCCCEEEEeeccCcHHHHHHHHc----CC-CEEEEEChHHHHHHHH
Confidence 35678999999999999999887643 25679999999999998654443 32 4999999998555788
Q ss_pred HHHHHcCCCCCcEEEEEecccccCCC-CCccEEEeccccccCCCCCc-HHHHHHHHHhcccCcEEEeccceeeEEeccCh
Q psy17734 387 KYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELLGSFGDNELS-PECLYAAQKYLKEDGISIPYNYTSYIAPIMSH 464 (626)
Q Consensus 387 ~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSEllgsfg~~El~-pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~ 464 (626)
++.+.+++.++ |+++.+|++++..+ ++||+|+|+++++++.++.. ++++.++.++|||||+++|+.+++|+++++++
T Consensus 104 ~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~ 182 (340)
T 2fyt_A 104 DIIRLNKLEDT-ITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDV 182 (340)
T ss_dssp HHHHHTTCTTT-EEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCH
T ss_pred HHHHHcCCCCc-EEEEEeeHHHhcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEcccceEEEEEecch
Confidence 88888999776 99999999999876 79999999999988888875 67899999999999999999999999999999
Q ss_pred HhHHHHhhhccc---cCCCc--ccCCCCcEEEEecCccccCCCeeEEEeeCCCCCCCCCCceeeEEEEEEeeCceEEEEE
Q psy17734 465 KLFTQVKSSMIK---EHQHP--LYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIA 539 (626)
Q Consensus 465 ~l~~~~~~~~~~---fd~~~--~~~~e~P~vv~l~~~~~Ls~p~~~~tFd~p~~~~~~~~~r~~~~~f~i~~~g~~hGf~ 539 (626)
.++.+...+|.. |++.. ...++.|+++.+.+...+++|+.+++||+.+.. .++..+...+.|++.++|.+|||+
T Consensus 183 ~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~v~~~~~~~~ls~p~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~ 261 (340)
T 2fyt_A 183 NKHADRIAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTS-ISDLEFSSDFTLKITRTSMCTAIA 261 (340)
T ss_dssp HHHHHHTGGGGCBTTBCCGGGHHHHTTBCEEECCCGGGBCBCCEEEEEEETTTCC-GGGGSEEEEEEEEBCSCEEEEEEE
T ss_pred hHhhhhhcccccccCcChHHHHHhhhcCcEEEEechhhcccCCEEEEEEECCCCc-ccccceEeeEEEEEccCcEEEEEE
Confidence 888776666653 44433 225788999888888999999999999998763 345677888999999999999999
Q ss_pred EEEEEEec----CceEEecCCCCCCCCCccceeEEEecCCceeeCCCCEEEEEEEEEecCc-eEEEEEEEe
Q psy17734 540 GYFDTFLY----KDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNV-KVWYEWLVT 605 (626)
Q Consensus 540 ~wFd~~L~----~~v~lSt~P~t~s~~m~sW~q~~fpL~~Pi~V~~Gd~i~v~~~R~~d~~-~VWyEW~~~ 605 (626)
+||++.|+ +++.|||+|.++ ++||+|++|||++|+.|++|++|+++++++.+.. .-++++.++
T Consensus 262 ~wfd~~~~~~~~~~v~lst~P~~~---~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~ 329 (340)
T 2fyt_A 262 GYFDIYFEKNCHNRVVFSTGPQST---KTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLT 329 (340)
T ss_dssp EEEEEEECTTCSSCEEEECSTTSC---CCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSCTTSEEEEEE
T ss_pred EEEEEEeecCCCCCEEEECCCCcC---CCccccEEEEeCCceEcCCCCEEEEEEEEEECCCCCceEEEEEE
Confidence 99999994 789999999764 6899999999999999999999999999998753 345566654
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-39 Score=343.81 Aligned_cols=281 Identities=20% Similarity=0.243 Sum_probs=231.6
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHH
Q psy17734 309 YEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKY 388 (626)
Q Consensus 309 Ye~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~ 388 (626)
.+.|++|..|+..|+++|...... .++.+|||||||+|.+++.++++ |. .+|+|||.++++..++++
T Consensus 38 ~~~~l~d~~r~~~~~~~i~~~~~~--------~~~~~VLDlGcGtG~ls~~la~~----g~-~~V~gvD~s~~~~~a~~~ 104 (376)
T 3r0q_C 38 QKDMLSDRVRMDAYFNAVFQNKHH--------FEGKTVLDVGTGSGILAIWSAQA----GA-RKVYAVEATKMADHARAL 104 (376)
T ss_dssp HHHHHTCHHHHHHHHHHHHTTTTT--------TTTCEEEEESCTTTHHHHHHHHT----TC-SEEEEEESSTTHHHHHHH
T ss_pred HHHHhcChHHHHHHHHHHHhcccc--------CCCCEEEEeccCcCHHHHHHHhc----CC-CEEEEEccHHHHHHHHHH
Confidence 356899999999999999876432 36789999999999999755443 32 499999999555588888
Q ss_pred HHHcCCCCCcEEEEEecccccCCCCCccEEEeccccccCCCCCc-HHHHHHHHHhcccCcEEEeccceeeEEeccChHhH
Q psy17734 389 KKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELS-PECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLF 467 (626)
Q Consensus 389 ~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~El~-pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l~ 467 (626)
++.+++.++ |+++++|++++..+++||+||++++++++.+|.. ..++.++.++|||||++||+.++.|++|++++.+.
T Consensus 105 ~~~~~~~~~-v~~~~~d~~~~~~~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~ 183 (376)
T 3r0q_C 105 VKANNLDHI-VEVIEGSVEDISLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIAD 183 (376)
T ss_dssp HHHTTCTTT-EEEEESCGGGCCCSSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEEEEEEEECCTHHH
T ss_pred HHHcCCCCe-EEEEECchhhcCcCCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCeEEEEeecchHHh
Confidence 888999887 9999999999998899999999999999998886 55788899999999999999999999999988654
Q ss_pred HHHh----------hhc---cc---cCCCccc----------CCCCcEEEEecCccccCCCeeEEEeeCCCCCCCCCCc-
Q psy17734 468 TQVK----------SSM---IK---EHQHPLY----------RFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNS- 520 (626)
Q Consensus 468 ~~~~----------~~~---~~---fd~~~~~----------~~e~P~vv~l~~~~~Ls~p~~~~tFd~p~~~~~~~~~- 520 (626)
.... .+| .. +|++... .+.+|++..+.+.+++++|+.+++||+.+... .+..
T Consensus 184 ~~~~~~~~~~~~W~~fw~~~~~~~G~d~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~lt~~~~~~~~d~~~~~~-~~l~~ 262 (376)
T 3r0q_C 184 RKRNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASV-SEIEE 262 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCCGGGHHHHHHHHHHHHTSBCEEECCCGGGBCBCCEEEEEEETTTCCG-GGTSE
T ss_pred hhhhhhhhhhhhhhhhhhccCccccCChHHHHhhhhhhhhhhcccCceEEEEChHHccCCCeEEEEEEcCcCCH-HHhcc
Confidence 3322 333 11 4554321 35889999999999999999999999987632 2333
Q ss_pred eeeEEEEEE-eeCceEEEEEEEEEEEecC--------ceEEecCCCCCCCCCccceeEEEecCCceeeCCCCEEEEEEEE
Q psy17734 521 RYTKATFIA-EQDSVLHGIAGYFDTFLYK--------DINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWR 591 (626)
Q Consensus 521 r~~~~~f~i-~~~g~~hGf~~wFd~~L~~--------~v~lSt~P~t~s~~m~sW~q~~fpL~~Pi~V~~Gd~i~v~~~R 591 (626)
+...++|++ .++|.+|||++|||++|++ +|.|||+|.. ++++||+|++|||++|+.|++|++|++++.+
T Consensus 263 ~~~~~~~~~~~~~~~~~g~~~wfd~~~~~~~~~~~~~~v~lSt~P~~--~~~thW~q~~~~l~~p~~v~~g~~i~~~~~~ 340 (376)
T 3r0q_C 263 VRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIELTTAPSE--QHCTHWGQQVFIMSNPINVEEGDNLNLGLLM 340 (376)
T ss_dssp EEEEEEEBCSCSCEEEEEEEEEEEEEEEEETTEEEEEEEEEECCCCS--SCCCTTCEEEEEEEEEEEECTTCEEEEEEEE
T ss_pred cccceEEEEeccCceEEEEEEEEEEEecCCccCCCCCccEEECCCCc--CCCCceeeEEEEECCceecCCCCEEEEEEEE
Confidence 677899999 9999999999999999964 5899999973 3589999999999999999999999999987
Q ss_pred EecCc-----eEEEEEEEec
Q psy17734 592 LCDNV-----KVWYEWLVTK 606 (626)
Q Consensus 592 ~~d~~-----~VWyEW~~~~ 606 (626)
+.+.+ .|-.+|.+.+
T Consensus 341 ~~~~~~~r~~~~~~~~~~~~ 360 (376)
T 3r0q_C 341 SRSKENHRLMEIELNCEIKE 360 (376)
T ss_dssp EECSSCTTSEEEEEEEEEEC
T ss_pred EECCCCCeeEEEEEEEEecC
Confidence 76643 4667777754
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=331.67 Aligned_cols=281 Identities=22% Similarity=0.254 Sum_probs=223.6
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHH
Q psy17734 309 YEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKY 388 (626)
Q Consensus 309 Ye~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~ 388 (626)
++.|++|..|+..|.++|.+.+.. .++.+|||||||+|.+++.++++ +. .+|+|||.++++..+++.
T Consensus 25 ~~~ml~d~~r~~~y~~~i~~~l~~--------~~~~~VLDiGcGtG~ls~~la~~----g~-~~V~~vD~s~~~~~a~~~ 91 (348)
T 2y1w_A 25 QQNMMQDYVRTGTYQRAILQNHTD--------FKDKIVLDVGCGSGILSFFAAQA----GA-RKIYAVEASTMAQHAEVL 91 (348)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTGGG--------TTTCEEEEETCTTSHHHHHHHHT----TC-SEEEEEECSTHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHhcccc--------CCcCEEEEcCCCccHHHHHHHhC----CC-CEEEEECCHHHHHHHHHH
Confidence 456899999999999999887754 25689999999999999754443 32 499999999866688888
Q ss_pred HHHcCCCCCcEEEEEecccccCCCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEeccChHhHH
Q psy17734 389 KKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFT 468 (626)
Q Consensus 389 ~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l~~ 468 (626)
++.+++.++ |+++.+|++++..+++||+|||+.+++++.++.+.+++..+.++|||||+++|+.+++|++|+++..++.
T Consensus 92 ~~~~~l~~~-v~~~~~d~~~~~~~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~i~~~~~~~ 170 (348)
T 2y1w_A 92 VKSNNLTDR-IVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYM 170 (348)
T ss_dssp HHHTTCTTT-EEEEESCTTTCCCSSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCEEEEEEEEECCHHHHH
T ss_pred HHHcCCCCc-EEEEEcchhhCCCCCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEecCcEEEEEecchHHhh
Confidence 888999777 9999999999988889999999999988888888888888889999999999999999999999998876
Q ss_pred HHh---hhccc-----cCCCc------ccCCCCcEEEEecCccccCCCeeEEEeeCCCCCCCCCCc-eeeEEEEEEeeCc
Q psy17734 469 QVK---SSMIK-----EHQHP------LYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNS-RYTKATFIAEQDS 533 (626)
Q Consensus 469 ~~~---~~~~~-----fd~~~------~~~~e~P~vv~l~~~~~Ls~p~~~~tFd~p~~~~~~~~~-r~~~~~f~i~~~g 533 (626)
+.. .+|.. +|++. ...|..|+++........+.+. ...+|+.+.. ..+.. +...++|++.++|
T Consensus 171 ~~~~~~~~w~~~~~~g~d~~~l~~~~~~~~f~~p~~d~~~~~~~~~~~~-~~~~df~~~~-~~~~~~~~~~~~~~~~~~g 248 (348)
T 2y1w_A 171 EQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSV-KYTVNFLEAK-EGDLHRIEIPFKFHMLHSG 248 (348)
T ss_dssp HHHHHHGGGCCSCBTTBCCGGGHHHHHHHHHTSCEEECCCGGGBCBCCE-EEEEETTTCC-GGGGSEEEEEEEEEBSSCE
T ss_pred hhccccCcccccccCcccHHHhhhHHHhhhccCCeEEeECCeeecCcce-EEEEECCcCC-hHHhceeeeeEEEEEccCc
Confidence 432 23321 24322 1346788877554332233332 3334554432 12333 4678999999999
Q ss_pred eEEEEEEEEEEEecC---ceEEecCCCCCCCCCccceeEEEecCCceeeCCCCEEEEEEEEEecC---ceEEEEEEEecC
Q psy17734 534 VLHGIAGYFDTFLYK---DINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDN---VKVWYEWLVTKP 607 (626)
Q Consensus 534 ~~hGf~~wFd~~L~~---~v~lSt~P~t~s~~m~sW~q~~fpL~~Pi~V~~Gd~i~v~~~R~~d~---~~VWyEW~~~~p 607 (626)
.+|||++|||++|++ +|.|||+|.. .++||+|++|||++|+.|++|++|+++++++.+. ..||++|.+..+
T Consensus 249 ~~~g~~~wfd~~~~~~~~~v~lSt~P~~---~~thW~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (348)
T 2y1w_A 249 LVHGLAFWFDVAFIGSIMTVWLSTAPTE---PLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQT 325 (348)
T ss_dssp EEEEEEEEEEEEEECSSCEEEEECCTTS---CCCTTCEEEEEEEEEEEECTTCEEEEEEEEEECTTSSEEEEEEEEETTT
T ss_pred EEEEEEEEEEEEEcCCCCceEEECCCCc---CCCeeeeEEEeeCCceEeCCCCEEEEEEEEEECCCCCcEEEEEEEEccc
Confidence 999999999999996 7899999953 4889999999999999999999999999988653 589999999765
Q ss_pred C
Q psy17734 608 T 608 (626)
Q Consensus 608 ~ 608 (626)
.
T Consensus 326 ~ 326 (348)
T 2y1w_A 326 G 326 (348)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=332.23 Aligned_cols=279 Identities=22% Similarity=0.266 Sum_probs=221.1
Q ss_pred HHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHH
Q psy17734 310 EVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYK 389 (626)
Q Consensus 310 e~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~ 389 (626)
..|++|..+++.|.+++.+.+.. .++.+|||||||+|.+++.+++ .+. .+|+|||.++++..+++.+
T Consensus 134 ~~~L~d~~~t~~~~~~il~~l~~--------~~~~~VLDiGcGtG~la~~la~----~~~-~~V~gvD~s~~l~~A~~~~ 200 (480)
T 3b3j_A 134 QNMMQDYVRTGTYQRAILQNHTD--------FKDKIVLDVGCGSGILSFFAAQ----AGA-RKIYAVEASTMAQHAEVLV 200 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGG--------TTTCEEEEESCSTTHHHHHHHH----TTC-SEEEEEECHHHHHHHHHHH
T ss_pred hhhhcChHhHHHHHHHHHHhhhh--------cCCCEEEEecCcccHHHHHHHH----cCC-CEEEEEEcHHHHHHHHHHH
Confidence 45888999999999998887643 2567999999999999865433 232 4999999999555778888
Q ss_pred HHcCCCCCcEEEEEecccccCCCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEeccChHhHHH
Q psy17734 390 KEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQ 469 (626)
Q Consensus 390 ~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l~~~ 469 (626)
..+++.++ |+++.+|++++..+++||+|||+.++++...|.+.+++..+.++|||||.++|..++.|++|++...++.+
T Consensus 201 ~~~gl~~~-v~~~~~d~~~~~~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~~~~~~~pi~~~~l~~e 279 (480)
T 3b3j_A 201 KSNNLTDR-IVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYME 279 (480)
T ss_dssp HHTTCTTT-EEEEESCTTTCCCSSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCEEEEEEEEECCHHHHHH
T ss_pred HHcCCCCc-EEEEECchhhCccCCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEeceeeeeccCchHHHHH
Confidence 88999777 99999999998888899999999998888777777788788899999999999999999999999988754
Q ss_pred Hh---hhcc--c---cCCCc------ccCCCCcEEEEecCccccCCCeeEEEeeCCCCCCCCCCce-eeEEEEEEeeCce
Q psy17734 470 VK---SSMI--K---EHQHP------LYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSR-YTKATFIAEQDSV 534 (626)
Q Consensus 470 ~~---~~~~--~---fd~~~------~~~~e~P~vv~l~~~~~Ls~p~~~~tFd~p~~~~~~~~~r-~~~~~f~i~~~g~ 534 (626)
.. .+|. . +|++. ...|..|+++........+.+. .+.+|+.... ..++.+ ...++|++.++|.
T Consensus 280 ~~~~~~~w~~~~~~g~dl~~l~~~~~~~~f~~pvvd~~~~~~~y~~tl-~~~~d~~~~~-~~~l~~~~~~~~~~~~~~g~ 357 (480)
T 3b3j_A 280 QFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSV-KYTVNFLEAK-EGDLHRIEIPFKFHMLHSGL 357 (480)
T ss_dssp HHHHHHHHHSSCBTTBCCGGGHHHHHHHHTTSCEECCCCSTTBCSCCE-EEEEETTTCC-TTTTTEEEEEEEEECSSCEE
T ss_pred HhhccCccccccCCCcChhhhhhHHHHhccCCcEEEEeecccccchhh-hhhhhhhcCC-hhhhcceeeeEEEEEccCcE
Confidence 22 2221 1 24322 1246778776544433344443 3456665442 234444 5789999999999
Q ss_pred EEEEEEEEEEEecC---ceEEecCCCCCCCCCccceeEEEecCCceeeCCCCEEEEEEEEEec---CceEEEEEEEecC
Q psy17734 535 LHGIAGYFDTFLYK---DINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCD---NVKVWYEWLVTKP 607 (626)
Q Consensus 535 ~hGf~~wFd~~L~~---~v~lSt~P~t~s~~m~sW~q~~fpL~~Pi~V~~Gd~i~v~~~R~~d---~~~VWyEW~~~~p 607 (626)
+|||++|||++|++ ++.|||+|.. .++||+|++|||++|+.|++|++|++++++..+ ..+|||||.++.+
T Consensus 358 ~hg~~~wFd~~~~~~~~~v~lST~P~~---~~thW~q~~~~l~~p~~v~~g~~i~g~~~~~~~~~~~~~v~~~~~~~~~ 433 (480)
T 3b3j_A 358 VHGLAFWFDVAFIGSIMTVWLSTAPTE---PLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQT 433 (480)
T ss_dssp EEEEEEEEEEEEECSSCEEESSSCCSS---SCCCSEEEEEEEEEEEEECTTCEEEEEEEEEECTTSSEEEEEEEEETTT
T ss_pred EEEEEEEEEEEEcCCCCceEEeCCCCc---CCCeeeeEEEEeCCceEeCCCCEEEEEEEEEECCCCCcEEEEEEEEccC
Confidence 99999999999996 6899999953 488999999999999999999999999998865 5699999999764
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=8.4e-13 Score=134.77 Aligned_cols=107 Identities=14% Similarity=0.145 Sum_probs=81.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||||||+|.++..+++.....| .+|+|||.|+.++ .|+++....+...+ |+++++|+++++. +++|+|++
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~--~~v~gvD~s~~ml~~A~~~~~~~~~~~~-v~~~~~D~~~~~~-~~~d~v~~ 145 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDN--CKIIAIDNSPAMIERCRRHIDAYKAPTP-VDVIEGDIRDIAI-ENASMVVL 145 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSS--CEEEEEESCHHHHHHHHHHHHTSCCSSC-EEEEESCTTTCCC-CSEEEEEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCC--CEEEEEECCHHHHHHHHHHHHhhccCce-EEEeecccccccc-ccccccee
Confidence 678999999999999865444332223 5999999999877 77777766677666 9999999999887 57999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
...-.+...+....+|..+.+.|||||++|-.
T Consensus 146 ~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~ 177 (261)
T 4gek_A 146 NFTLQFLEPSERQALLDKIYQGLNPGGALVLS 177 (261)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eeeeeecCchhHhHHHHHHHHHcCCCcEEEEE
Confidence 65444443332346889999999999998753
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-11 Score=126.38 Aligned_cols=97 Identities=18% Similarity=0.121 Sum_probs=81.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|+++.. |+++.+ .+|+|+|.||.|+ .++++++.|++.++ |+++++|.+++....+||.|+.
T Consensus 125 ~g~~VlD~~aG~G~~~i~---~a~~g~--~~V~avD~np~a~~~~~~N~~~N~v~~~-v~~~~~D~~~~~~~~~~D~Vi~ 198 (278)
T 3k6r_A 125 PDELVVDMFAGIGHLSLP---IAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDR-MSAYNMDNRDFPGENIADRILM 198 (278)
T ss_dssp TTCEEEETTCTTTTTTHH---HHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTT-EEEECSCTTTCCCCSCEEEEEE
T ss_pred CCCEEEEecCcCcHHHHH---HHHhcC--CeEEEEECCHHHHHHHHHHHHHcCCCCc-EEEEeCcHHHhccccCCCEEEE
Confidence 578999999999999964 444322 4999999999988 77888999999998 9999999999987789999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.++. .+.++|+.+.+.||+||++.
T Consensus 199 ~~p~------~~~~~l~~a~~~lk~gG~ih 222 (278)
T 3k6r_A 199 GYVV------RTHEFIPKALSIAKDGAIIH 222 (278)
T ss_dssp CCCS------SGGGGHHHHHHHEEEEEEEE
T ss_pred CCCC------cHHHHHHHHHHHcCCCCEEE
Confidence 7654 23567888889999999874
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.6e-11 Score=116.40 Aligned_cols=102 Identities=14% Similarity=0.139 Sum_probs=78.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--C-CCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--A-PEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~-p~k~Di 417 (626)
++.+|||+|||+|.++..++ +. +. .+|+|+|.|+.++ .++++...++. + +++++++|+.++. . .++||+
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~---~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~-~-~v~~~~~d~~~~~~~~~~~~fD~ 116 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEAL---SR-GA-ASVLFVESDQRSAAVIARNIEALGL-S-GATLRRGAVAAVVAAGTTSPVDL 116 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHH---HT-TC-SEEEEEECCHHHHHHHHHHHHHHTC-S-CEEEEESCHHHHHHHCCSSCCSE
T ss_pred CCCEEEEeCCCcCHHHHHHH---HC-CC-CeEEEEECCHHHHHHHHHHHHHcCC-C-ceEEEEccHHHHHhhccCCCccE
Confidence 56799999999999986433 22 32 4899999999877 77777777887 4 4999999999874 2 478999
Q ss_pred EEeccccccCCC-CCcHHHHHHHHH--hcccCcEEEec
Q psy17734 418 MVSELLGSFGDN-ELSPECLYAAQK--YLKEDGISIPY 452 (626)
Q Consensus 418 IVSEllgsfg~~-El~pe~L~~~~r--~LkpgGi~IP~ 452 (626)
|++... +... +...+.+..+.+ +|||||+++-+
T Consensus 117 i~~~~p--~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~ 152 (189)
T 3p9n_A 117 VLADPP--YNVDSADVDAILAALGTNGWTREGTVAVVE 152 (189)
T ss_dssp EEECCC--TTSCHHHHHHHHHHHHHSSSCCTTCEEEEE
T ss_pred EEECCC--CCcchhhHHHHHHHHHhcCccCCCeEEEEE
Confidence 999765 2211 334667888888 99999998854
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-10 Score=120.00 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++ +..+ .+|+|+|.++.++ .+++....+++.++ |+++.+|++++ +++||+|++
T Consensus 72 ~~~~vLDiGcG~G~~~~~la---~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~--~~~fD~v~~ 143 (302)
T 3hem_A 72 PGMTLLDIGCGWGSTMRHAV---AEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRR-KEVRIQGWEEF--DEPVDRIVS 143 (302)
T ss_dssp TTCEEEEETCTTSHHHHHHH---HHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSC-EEEEECCGGGC--CCCCSEEEE
T ss_pred CcCEEEEeeccCcHHHHHHH---HhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCc-eEEEECCHHHc--CCCccEEEE
Confidence 56799999999999986443 3334 4999999999877 77777777888777 99999999998 689999998
Q ss_pred cc-ccccCCC------CCcHHHHHHHHHhcccCcEEEecc
Q psy17734 421 EL-LGSFGDN------ELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 421 El-lgsfg~~------El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
.. +.++.+. +..+.++..+.+.|||||.++-..
T Consensus 144 ~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 144 LGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp ESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred cchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 53 4444332 234688999999999999988643
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-10 Score=119.74 Aligned_cols=100 Identities=16% Similarity=0.169 Sum_probs=79.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMV 419 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIV 419 (626)
.++.+|||||||+|.++... +++..| .+|+|||.++.++ .|+++.++.+. ++ |+++++|+.+++ .++||+|+
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~--lA~~~g--a~V~gIDis~~~l~~Ar~~~~~~gl-~~-v~~v~gDa~~l~-d~~FDvV~ 193 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGIL--LSHVYG--MRVNVVEIEPDIAELSRKVIEGLGV-DG-VNVITGDETVID-GLEFDVLM 193 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHH--HHHTTC--CEEEEEESSHHHHHHHHHHHHHHTC-CS-EEEEESCGGGGG-GCCCSEEE
T ss_pred CCcCEEEEECCCccHHHHHH--HHHccC--CEEEEEECCHHHHHHHHHHHHhcCC-CC-eEEEECchhhCC-CCCcCEEE
Confidence 36789999999999887532 333345 4999999999877 77887777788 65 999999999986 57899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+..+ -+...++++.+.+.|||||+++-.
T Consensus 194 ~~a~-----~~d~~~~l~el~r~LkPGG~Lvv~ 221 (298)
T 3fpf_A 194 VAAL-----AEPKRRVFRNIHRYVDTETRIIYR 221 (298)
T ss_dssp ECTT-----CSCHHHHHHHHHHHCCTTCEEEEE
T ss_pred ECCC-----ccCHHHHHHHHHHHcCCCcEEEEE
Confidence 7432 233467899999999999998843
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.4e-10 Score=117.57 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=81.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIM 418 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiI 418 (626)
.++.+|||+|||+|.++..+++. .+ .+|+|+|.++.++ .++++...+++.++ |+++.+|+++++.+ ++||+|
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~---~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V 189 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRR---FG--SRVEGVTLSAAQADFGNRRARELRIDDH-VRSRVCNMLDTPFDKGAVTAS 189 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHH---HC--CEEEEEESCHHHHHHHHHHHHHTTCTTT-EEEEECCTTSCCCCTTCEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHH---cC--CEEEEEeCCHHHHHHHHHHHHHcCCCCc-eEEEECChhcCCCCCCCEeEE
Confidence 35689999999999998654443 23 4999999999877 77777778888776 99999999998754 799999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
++..+-...+ ...++..+.+.|||||.++-
T Consensus 190 ~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~ 219 (312)
T 3vc1_A 190 WNNESTMYVD---LHDLFSEHSRFLKVGGRYVT 219 (312)
T ss_dssp EEESCGGGSC---HHHHHHHHHHHEEEEEEEEE
T ss_pred EECCchhhCC---HHHHHHHHHHHcCCCcEEEE
Confidence 9854333332 67899999999999999874
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=8e-11 Score=112.18 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=75.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiI 418 (626)
++.+|||+|||+|.++..+ ++. + .+|+|||.++.++ .++++...+++ + +|++++++.+++. .+++||+|
T Consensus 22 ~~~~vLDiGcG~G~~~~~l---a~~-~--~~v~~vD~s~~~l~~a~~~~~~~~~-~-~v~~~~~~~~~l~~~~~~~fD~v 93 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFL---AGL-S--KKVYAFDVQEQALGKTSQRLSDLGI-E-NTELILDGHENLDHYVREPIRAA 93 (185)
T ss_dssp TTCEEEESCCTTSHHHHHH---HTT-S--SEEEEEESCHHHHHHHHHHHHHHTC-C-CEEEEESCGGGGGGTCCSCEEEE
T ss_pred CCCEEEEEcCCCCHHHHHH---HHh-C--CEEEEEECCHHHHHHHHHHHHHcCC-C-cEEEEeCcHHHHHhhccCCcCEE
Confidence 5679999999999998643 333 3 5999999999887 77777777887 4 4999998888753 25789999
Q ss_pred EeccccccCC--C------CCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 419 VSELLGSFGD--N------ELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 419 VSEllgsfg~--~------El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
++.+ +++.. . +.....+..+.+.|||||.++-..+
T Consensus 94 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 94 IFNL-GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp EEEE-C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEeC-CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9864 33221 1 1123567888899999999875543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-10 Score=115.31 Aligned_cols=104 Identities=15% Similarity=0.049 Sum_probs=82.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..+++. .+ .+|+|+|.++.++ .+++....+++.++ |+++.+|+++++.+ ++||+|+
T Consensus 46 ~~~~vLDiG~G~G~~~~~l~~~---~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~fD~v~ 119 (257)
T 3f4k_A 46 DDAKIADIGCGTGGQTLFLADY---VK--GQITGIDLFPDFIEIFNENAVKANCADR-VKGITGSMDNLPFQNEELDLIW 119 (257)
T ss_dssp TTCEEEEETCTTSHHHHHHHHH---CC--SEEEEEESCHHHHHHHHHHHHHTTCTTT-EEEEECCTTSCSSCTTCEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHh---CC--CeEEEEECCHHHHHHHHHHHHHcCCCCc-eEEEECChhhCCCCCCCEEEEE
Confidence 5679999999999998644333 33 3999999999877 77777778888877 99999999998764 7899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+..+-... ..+.++..+.+.|||||.++-...
T Consensus 120 ~~~~l~~~---~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 120 SEGAIYNI---GFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp EESCSCCC---CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ecChHhhc---CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 96432222 256789999999999999876543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.7e-10 Score=115.26 Aligned_cols=104 Identities=16% Similarity=0.155 Sum_probs=79.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++ +..+ .+|+|+|.++.++ .+++.....+..++ |+++.+|+++++ ++||+|++
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~---~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~--~~fD~v~~ 135 (287)
T 1kpg_A 64 PGMTLLDVGCGWGATMMRAV---EKYD--VNVVGLTLSKNQANHVQQLVANSENLRS-KRVLLAGWEQFD--EPVDRIVS 135 (287)
T ss_dssp TTCEEEEETCTTSHHHHHHH---HHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSC-EEEEESCGGGCC--CCCSEEEE
T ss_pred CcCEEEEECCcccHHHHHHH---HHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCC-eEEEECChhhCC--CCeeEEEE
Confidence 56799999999999986433 2334 4999999999877 66666666677666 999999998876 88999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
..+-.....+....++..+.+.|||||.++-..
T Consensus 136 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 136 IGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp ESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred eCchhhcChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 433222223445788999999999999988543
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-10 Score=115.32 Aligned_cols=103 Identities=16% Similarity=0.125 Sum_probs=79.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++ +..+ .+|+|+|.++.++ .+++.....++.++ |+++.+|+.++..+++||+|++
T Consensus 36 ~~~~VLDiGcG~G~~~~~la---~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~V~~ 109 (256)
T 1nkv_A 36 PGTRILDLGSGSGEMLCTWA---RDHG--ITGTGIDMSSLFTAQAKRRAEELGVSER-VHFIHNDAAGYVANEKCDVAAC 109 (256)
T ss_dssp TTCEEEEETCTTCHHHHHHH---HHTC--CEEEEEESCHHHHHHHHHHHHHTTCTTT-EEEEESCCTTCCCSSCEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHH---HhcC--CeEEEEeCCHHHHHHHHHHHHhcCCCcc-eEEEECChHhCCcCCCCCEEEE
Confidence 56799999999999986433 3334 4999999999876 66677677787666 9999999999876788999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
....... .....+|..+.+.|||||.++-.
T Consensus 110 ~~~~~~~--~~~~~~l~~~~r~LkpgG~l~~~ 139 (256)
T 1nkv_A 110 VGATWIA--GGFAGAEELLAQSLKPGGIMLIG 139 (256)
T ss_dssp ESCGGGT--SSSHHHHHHHTTSEEEEEEEEEE
T ss_pred CCChHhc--CCHHHHHHHHHHHcCCCeEEEEe
Confidence 4322221 23577899999999999987753
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=8e-11 Score=120.90 Aligned_cols=101 Identities=17% Similarity=0.096 Sum_probs=82.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..+++. +. .+|+|+|.|+.++ .++++...|+..++ ++++++|++++...++||+|++
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~----~~-~~V~~vD~s~~~~~~a~~n~~~n~~~~~-v~~~~~D~~~~~~~~~fD~Vi~ 198 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVY----GK-AKVIAIEKDPYTFKFLVENIHLNKVEDR-MSAYNMDNRDFPGENIADRILM 198 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHH----TC-CEEEEECCCHHHHHHHHHHHHHTTCTTT-EEEECSCTTTCCCCSCEEEEEE
T ss_pred CCCEEEEecccCCHHHHHHHHh----CC-CEEEEEECCHHHHHHHHHHHHHcCCCce-EEEEECCHHHhcccCCccEEEE
Confidence 4679999999999999654433 22 2899999999887 77888888999876 9999999999877789999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
++.. ...+++..+.+.|||||+++-...
T Consensus 199 ~~p~------~~~~~l~~~~~~LkpgG~l~~~~~ 226 (278)
T 2frn_A 199 GYVV------RTHEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp CCCS------SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred CCch------hHHHHHHHHHHHCCCCeEEEEEEe
Confidence 7652 235678888999999999885443
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.4e-10 Score=114.19 Aligned_cols=102 Identities=15% Similarity=0.131 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++.. | .+|+|+|.++.++ .++++...++. +|+++.+|+.++..++++|+|++
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~----~--~~v~gvD~s~~~l~~a~~~~~~~~~---~v~~~~~d~~~~~~~~~fD~v~~ 111 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAER----G--YEVVGLDLHEEMLRVARRKAKERNL---KIEFLQGDVLEIAFKNEFDAVTM 111 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHT----T--CEEEEEESCHHHHHHHHHHHHHTTC---CCEEEESCGGGCCCCSCEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHC----C--CeEEEEECCHHHHHHHHHHHHhcCC---ceEEEECChhhcccCCCccEEEE
Confidence 4579999999999998644332 3 4999999999877 66666555554 49999999999887789999997
Q ss_pred ccc-cccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELL-GSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ell-gsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
-.. ..+...+....++..+.+.|||||.++-.
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp CSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 321 11111122356888899999999998743
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-10 Score=110.81 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=78.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++.. + .+|+|+|.++.++ .+++....++.. +++++.+|+.++..+++||+|++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~----~--~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~~~~~~D~v~~ 103 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAAN----G--YDVDAWDKNAMSIANVERIKSIENLD--NLHTRVVDLNNLTFDRQYDFILS 103 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT----T--CEEEEEESCHHHHHHHHHHHHHHTCT--TEEEEECCGGGCCCCCCEEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHC----C--CeEEEEECCHHHHHHHHHHHHhCCCC--CcEEEEcchhhCCCCCCceEEEE
Confidence 4569999999999998643332 3 4999999999877 666666666664 49999999999877789999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
...-.+...+....++..+.+.|||||.++
T Consensus 104 ~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~ 133 (199)
T 2xvm_A 104 TVVLMFLEAKTIPGLIANMQRCTKPGGYNL 133 (199)
T ss_dssp ESCGGGSCGGGHHHHHHHHHHTEEEEEEEE
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 654444333345778999999999999865
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.7e-11 Score=113.07 Aligned_cols=107 Identities=16% Similarity=0.147 Sum_probs=78.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiI 418 (626)
++.+|||+|||+|.++..+++.. +...+|+|+|.++.++ .++++...+++.++ ++++++|++++. .+++||+|
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~fD~v 97 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLV---GENGRVFGFDIQDKAIANTTKKLTDLNLIDR-VTLIKDGHQNMDKYIDCPVKAV 97 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHH---CTTCEEEEECSCHHHHHHHHHHHHHTTCGGG-EEEECSCGGGGGGTCCSCEEEE
T ss_pred CCCEEEEcCCCCCHHHHHHHHHh---CCCCEEEEEECCHHHHHHHHHHHHHcCCCCC-eEEEECCHHHHhhhccCCceEE
Confidence 56799999999999986554442 2224999999999877 77777777777555 999999998874 45789999
Q ss_pred Eecccc-ccCCCCC------cHHHHHHHHHhcccCcEEEec
Q psy17734 419 VSELLG-SFGDNEL------SPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 419 VSEllg-sfg~~El------~pe~L~~~~r~LkpgGi~IP~ 452 (626)
++.+.- ...+... ..+++..+.+.|||||.++-.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~ 138 (197)
T 3eey_A 98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVV 138 (197)
T ss_dssp EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEE
Confidence 987521 0111111 135788899999999998754
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-10 Score=113.45 Aligned_cols=106 Identities=8% Similarity=0.069 Sum_probs=76.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCC----CcEEEEEecccccCCC-CCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQ----SDVTIVSEDMRTWNAP-EKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~----~nV~vi~~D~~~~~~p-~k~ 415 (626)
++.+|||+|||+|.++..+++ ..+ ..+|+|+|.++.++ .++++...+++.+ + |+++.+|+.....+ ++|
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~---~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~f 103 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLK---DSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWER-LQLIQGALTYQDKRFHGY 103 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHH---CTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTT-EEEEECCTTSCCGGGCSC
T ss_pred CCCEEEEeCCCCCHHHHHHHh---hCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcc-eEEEeCCcccccccCCCc
Confidence 457999999999999864333 222 24999999999877 6666665566543 5 99999999766543 689
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
|+|++..+-.....+....++..+.+.|||||+++-.
T Consensus 104 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~ 140 (217)
T 3jwh_A 104 DAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTT 140 (217)
T ss_dssp SEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred CEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 9999844322222222356889999999999987743
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=9.3e-11 Score=114.41 Aligned_cols=100 Identities=16% Similarity=0.225 Sum_probs=73.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..+ ++. + .+|+|+|.++.++ .+++.... .+ +++++.+|+.++..+++||+|++
T Consensus 51 ~~~~vLDiGcG~G~~~~~l---~~~-~--~~v~~vD~s~~~~~~a~~~~~~--~~--~~~~~~~d~~~~~~~~~fD~v~~ 120 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKL---APH-C--KRLTVIDVMPRAIGRACQRTKR--WS--HISWAATDILQFSTAELFDLIVV 120 (216)
T ss_dssp SEEEEEEECCTTSHHHHHH---GGG-E--EEEEEEESCHHHHHHHHHHTTT--CS--SEEEEECCTTTCCCSCCEEEEEE
T ss_pred CCCcEEEEcCCCCHHHHHH---HHc-C--CEEEEEECCHHHHHHHHHhccc--CC--CeEEEEcchhhCCCCCCccEEEE
Confidence 4578999999999998643 332 3 4999999999877 44444332 22 49999999999987789999998
Q ss_pred ccc-cccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 421 ELL-GSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ell-gsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
... .++.+.+....++..+.+.|||||.++-
T Consensus 121 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 152 (216)
T 3ofk_A 121 AEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVF 152 (216)
T ss_dssp ESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 543 2222222234678899999999999874
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.7e-10 Score=118.23 Aligned_cols=103 Identities=14% Similarity=0.080 Sum_probs=78.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..+++. .| .+|+|+|.++.++ .+++.....++.++ |+++.+|+++++ ++||+|++
T Consensus 90 ~~~~vLDiGcG~G~~~~~la~~---~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~--~~fD~v~~ 161 (318)
T 2fk8_A 90 PGMTLLDIGCGWGTTMRRAVER---FD--VNVIGLTLSKNQHARCEQVLASIDTNRS-RQVLLQGWEDFA--EPVDRIVS 161 (318)
T ss_dssp TTCEEEEESCTTSHHHHHHHHH---HC--CEEEEEESCHHHHHHHHHHHHTSCCSSC-EEEEESCGGGCC--CCCSEEEE
T ss_pred CcCEEEEEcccchHHHHHHHHH---CC--CEEEEEECCHHHHHHHHHHHHhcCCCCc-eEEEECChHHCC--CCcCEEEE
Confidence 5679999999999998654433 24 4999999999877 66666666777666 999999998875 78999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..+-.....+....++..+.+.|||||.++-.
T Consensus 162 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 193 (318)
T 2fk8_A 162 IEAFEHFGHENYDDFFKRCFNIMPADGRMTVQ 193 (318)
T ss_dssp ESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred eChHHhcCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 43322222234577899999999999998753
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-10 Score=118.15 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=80.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++.. | .+|+|+|.++.++ .+++....++. + ++++.+|+.+...+++||+|++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~----g--~~v~~vD~s~~~~~~a~~~~~~~~~--~-~~~~~~d~~~~~~~~~fD~i~~ 190 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL----G--YDVTSWDHNENSIAFLNETKEKENL--N-ISTALYDINAANIQENYDFIVS 190 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT----T--CEEEEEESCHHHHHHHHHHHHHTTC--C-EEEEECCGGGCCCCSCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHC----C--CeEEEEECCHHHHHHHHHHHHHcCC--c-eEEEEeccccccccCCccEEEE
Confidence 4579999999999998643332 4 4999999999887 66666666776 3 9999999999887889999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
..+-.+...+....++..+.+.|||||.++
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 220 (286)
T 3m70_A 191 TVVFMFLNRERVPSIIKNMKEHTNVGGYNL 220 (286)
T ss_dssp CSSGGGSCGGGHHHHHHHHHHTEEEEEEEE
T ss_pred ccchhhCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 765555555556789999999999999865
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.14 E-value=9.5e-11 Score=114.27 Aligned_cols=106 Identities=12% Similarity=0.113 Sum_probs=78.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCC-CCcEEEEEecccccCC---CCC-c
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWA-QSDVTIVSEDMRTWNA---PEK-A 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~-~~nV~vi~~D~~~~~~---p~k-~ 415 (626)
++.+|||+|||+|.++..++ ++ +. .+|+|||.|+.++ .++++...+++. ++ |+++.+|+.++.. +++ |
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~---~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~f 126 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEAL---SR-QA-KKVTFLELDKTVANQLKKNLQTLKCSSEQ-AEVINQSSLDFLKQPQNQPHF 126 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHH---HT-TC-SEEEEECSCHHHHHHHHHHHHHTTCCTTT-EEEECSCHHHHTTSCCSSCCE
T ss_pred CCCeEEEcCCccCHHHHHHH---Hc-cC-CEEEEEECCHHHHHHHHHHHHHhCCCccc-eEEEECCHHHHHHhhccCCCC
Confidence 35789999999999986433 22 22 4999999999877 777777778874 44 9999999988643 367 9
Q ss_pred cEEEeccccccCCCCCcHHHHHHH--HHhcccCcEEEecccee
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAA--QKYLKEDGISIPYNYTS 456 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~--~r~LkpgGi~IP~~~t~ 456 (626)
|+|++... |. .+..++++..+ .++|||||+++-.....
T Consensus 127 D~I~~~~~--~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 127 DVVFLDPP--FH-FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp EEEEECCC--SS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CEEEECCC--CC-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 99999775 22 22346677777 45799999988654433
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-10 Score=116.56 Aligned_cols=104 Identities=18% Similarity=0.082 Sum_probs=81.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++.. +++..+ .+|+|+|.++.++ .+++.....++.++ |+++.+|+++++.+ ++||+|+
T Consensus 46 ~~~~vLDiGcG~G~~~~~---la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~i~ 119 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMV---LAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNR-VTGIVGSMDDLPFRNEELDLIW 119 (267)
T ss_dssp TTCEEEEETCTTCHHHHH---HHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTT-EEEEECCTTSCCCCTTCEEEEE
T ss_pred CCCEEEEeCCCCCHHHHH---HHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcC-cEEEEcChhhCCCCCCCEEEEE
Confidence 568999999999999854 333322 5999999999877 67777777888776 99999999998754 7899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+..+-... ....++..+.+.|||||.++-...
T Consensus 120 ~~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 120 SEGAIYNI---GFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp ESSCGGGT---CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred EcCCceec---CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 96543332 247789999999999999886544
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.2e-10 Score=115.94 Aligned_cols=105 Identities=12% Similarity=0.107 Sum_probs=77.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc-CCCCCcEEEEEecccccCCC-------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE-QWAQSDVTIVSEDMRTWNAP------- 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n-~~~~~nV~vi~~D~~~~~~p------- 412 (626)
++.+|||+|||+|.++..+++... .+ .+|+|||.++.++ .+++..... +...+ |+++.+|++++..+
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~-~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~ 111 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELK-PF--EQIIGSDLSATMIKTAEVIKEGSPDTYKN-VSFKISSSDDFKFLGADSVDK 111 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSS-CC--SEEEEEESCHHHHHHHHHHHHHCC-CCTT-EEEEECCTTCCGGGCTTTTTS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCC-CC--CEEEEEeCCHHHHHHHHHHHHhccCCCCc-eEEEEcCHHhCCccccccccC
Confidence 568999999999999865443211 22 5999999999877 666655554 33444 99999999997653
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
++||+|++...-++. ....++..+.+.|||||.++-..
T Consensus 112 ~~fD~V~~~~~l~~~---~~~~~l~~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 112 QKIDMITAVECAHWF---DFEKFQRSAYANLRKDGTIAIWG 149 (299)
T ss_dssp SCEEEEEEESCGGGS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeeEEeHhhHHHHh---CHHHHHHHHHHhcCCCcEEEEEe
Confidence 589999985543333 35678999999999999987543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.1e-10 Score=109.05 Aligned_cols=99 Identities=21% Similarity=0.241 Sum_probs=78.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEecc
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSEL 422 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSEl 422 (626)
+|||+|||+|.++..++.. .+ .+|+|+|.++.++ .+++.....+..++ ++++.+|+.+++.+ ++||+|++..
T Consensus 46 ~vLdiG~G~G~~~~~l~~~---~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~D~v~~~~ 119 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQ---SD--FSIRALDFSKHMNEIALKNIADANLNDR-IQIVQGDVHNIPIEDNYADLIVSRG 119 (219)
T ss_dssp EEEEETCTTSHHHHHHHHH---SE--EEEEEEESCHHHHHHHHHHHHHTTCTTT-EEEEECBTTBCSSCTTCEEEEEEES
T ss_pred EEEEECCCCCHHHHHHHHc---CC--CeEEEEECCHHHHHHHHHHHHhccccCc-eEEEEcCHHHCCCCcccccEEEECc
Confidence 8999999999998654443 22 5999999999877 77777777777666 99999999998765 7899999854
Q ss_pred ccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 423 LGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 423 lgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
.-... +....++..+.+.|||||.++-
T Consensus 120 ~l~~~--~~~~~~l~~~~~~L~pgG~l~~ 146 (219)
T 3dlc_A 120 SVFFW--EDVATAFREIYRILKSGGKTYI 146 (219)
T ss_dssp CGGGC--SCHHHHHHHHHHHEEEEEEEEE
T ss_pred hHhhc--cCHHHHHHHHHHhCCCCCEEEE
Confidence 32222 3456789999999999999775
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.13 E-value=5.7e-10 Score=109.15 Aligned_cols=97 Identities=9% Similarity=0.013 Sum_probs=76.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccc-cCCCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRT-WNAPEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~-~~~p~k~DiIV 419 (626)
++.+|||+|||+|.++..++ +. + .+|+|||.++.++ .++++.+.++..++ |+++.+|+.+ +...++||+|+
T Consensus 55 ~~~~vLDlGcG~G~~~~~la---~~-~--~~v~~vD~s~~~~~~a~~~~~~~g~~~~-v~~~~~d~~~~~~~~~~~D~v~ 127 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWC---LA-G--GRAITIEPRADRIENIQKNIDTYGLSPR-MRAVQGTAPAALADLPLPEAVF 127 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHH---HT-T--CEEEEEESCHHHHHHHHHHHHHTTCTTT-EEEEESCTTGGGTTSCCCSEEE
T ss_pred CCCEEEEecCCCCHHHHHHH---Hc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCC-EEEEeCchhhhcccCCCCCEEE
Confidence 56799999999999986443 32 3 4999999999877 77777777888666 9999999998 44446899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.. +. ..+ ++..+.+.|||||.++-.
T Consensus 128 ~~~----~~--~~~-~l~~~~~~LkpgG~lv~~ 153 (204)
T 3njr_A 128 IGG----GG--SQA-LYDRLWEWLAPGTRIVAN 153 (204)
T ss_dssp ECS----CC--CHH-HHHHHHHHSCTTCEEEEE
T ss_pred ECC----cc--cHH-HHHHHHHhcCCCcEEEEE
Confidence 743 11 223 889999999999998854
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.12 E-value=8.8e-11 Score=121.59 Aligned_cols=107 Identities=16% Similarity=0.093 Sum_probs=80.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++. +. ....+|+|+|.++.++ .++++...+++.++ |+++.+|+.++..+++||+|++
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~-~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~v~~ 193 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDY-SA--CPGVQLVGIDYDPEALDGATRLAAGHALAGQ-ITLHRQDAWKLDTREGYDLLTS 193 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCC-TT--CTTCEEEEEESCHHHHHHHHHHHTTSTTGGG-EEEEECCGGGCCCCSCEEEEEC
T ss_pred CCCEEEEecCCCCHHHHHHHH-hc--CCCCeEEEEECCHHHHHHHHHHHHhcCCCCc-eEEEECchhcCCccCCeEEEEE
Confidence 567999999999999853211 11 1225999999999877 67777767777766 9999999999887799999999
Q ss_pred cccc-ccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLG-SFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellg-sfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..+. ++.+.+...+++..+.+.|||||.++-.
T Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 226 (305)
T 3ocj_A 194 NGLNIYEPDDARVTELYRRFWQALKPGGALVTS 226 (305)
T ss_dssp CSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 5433 2223333345789999999999998854
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-10 Score=114.60 Aligned_cols=100 Identities=19% Similarity=0.224 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++.. .++. .+|+|+|.++.++ .+++....++ . +++++.+|+.++..++++|+|++
T Consensus 33 ~~~~vLdiG~G~G~~~~~---l~~~----~~v~~vD~s~~~~~~a~~~~~~~~--~-~~~~~~~d~~~~~~~~~fD~v~~ 102 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLL---LADH----YEVTGVDLSEEMLEIAQEKAMETN--R-HVDFWVQDMRELELPEPVDAITI 102 (243)
T ss_dssp TTCEEEEESCTTCHHHHH---HTTT----SEEEEEESCHHHHHHHHHHHHHTT--C-CCEEEECCGGGCCCSSCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHH---HhhC----CeEEEEECCHHHHHHHHHhhhhcC--C-ceEEEEcChhhcCCCCCcCEEEE
Confidence 347999999999999853 3332 3999999999877 5666555554 3 49999999999887789999998
Q ss_pred c--cccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 421 E--LLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 E--llgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
. .+.++...+....++..+.+.|||||.++-
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 103 LCDSLNYLQTEADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp CTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4 333332223346688889999999999874
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-10 Score=114.03 Aligned_cols=102 Identities=23% Similarity=0.239 Sum_probs=75.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++.... + .+|+|+|.++.++ .+++..... + + |+++.+|+.++..+++||+|++
T Consensus 44 ~~~~vLDiG~G~G~~~~~l~~~~~--~--~~v~~vD~s~~~~~~a~~~~~~~--~-~-~~~~~~d~~~~~~~~~fD~v~~ 115 (234)
T 3dtn_A 44 ENPDILDLGAGTGLLSAFLMEKYP--E--ATFTLVDMSEKMLEIAKNRFRGN--L-K-VKYIEADYSKYDFEEKYDMVVS 115 (234)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHCT--T--CEEEEEESCHHHHHHHHHHTCSC--T-T-EEEEESCTTTCCCCSCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHhCC--C--CeEEEEECCHHHHHHHHHhhccC--C-C-EEEEeCchhccCCCCCceEEEE
Confidence 568999999999999865444321 2 5999999999877 444443222 2 4 9999999999987789999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
...-.....+...+++..+.+.|||||.++-
T Consensus 116 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 146 (234)
T 3dtn_A 116 ALSIHHLEDEDKKELYKRSYSILKESGIFIN 146 (234)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eCccccCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 5433332222223588999999999999884
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-10 Score=114.49 Aligned_cols=118 Identities=15% Similarity=0.212 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCC
Q psy17734 319 YIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQS 397 (626)
Q Consensus 319 y~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~ 397 (626)
|..+.+.+.+.+... ..++.+|||+|||+|.++..+ ++. + .+|+++|.++.++ .+++.....+. +
T Consensus 20 ~~~~~~~~~~~l~~~------~~~~~~vLdiG~G~G~~~~~l---~~~-~--~~~~~~D~s~~~~~~a~~~~~~~~~--~ 85 (246)
T 1y8c_A 20 YKKWSDFIIEKCVEN------NLVFDDYLDLACGTGNLTENL---CPK-F--KNTWAVDLSQEMLSEAENKFRSQGL--K 85 (246)
T ss_dssp HHHHHHHHHHHHHTT------TCCTTEEEEETCTTSTTHHHH---GGG-S--SEEEEECSCHHHHHHHHHHHHHTTC--C
T ss_pred HHHHHHHHHHHHHHh------CCCCCeEEEeCCCCCHHHHHH---HHC-C--CcEEEEECCHHHHHHHHHHHhhcCC--C
Confidence 444555555555432 124579999999999998543 332 3 4999999999877 66666555554 3
Q ss_pred cEEEEEecccccCCCCCccEEEec--cccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 398 DVTIVSEDMRTWNAPEKADIMVSE--LLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 398 nV~vi~~D~~~~~~p~k~DiIVSE--llgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
++++.+|+.++..+++||+|++. .+.++...+....++..+.+.|||||.++-
T Consensus 86 -~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 140 (246)
T 1y8c_A 86 -PRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp -CEEECCCGGGCCCSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred -eEEEecccccCCccCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 99999999998877899999984 333332223346788999999999999873
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.11 E-value=3.6e-10 Score=110.57 Aligned_cols=106 Identities=10% Similarity=0.114 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCC----CcEEEEEecccccCC-CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQ----SDVTIVSEDMRTWNA-PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~----~nV~vi~~D~~~~~~-p~k~ 415 (626)
++.+|||+|||+|.++..++ +. +...+|+|||.++.++ .+++....+++.+ + |+++.+|+..... .++|
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~---~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~f 103 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLL---KD-KSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKR-ISLFQSSLVYRDKRFSGY 103 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHH---TS-TTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTT-EEEEECCSSSCCGGGTTC
T ss_pred CCCEEEEecCCCCHHHHHHH---hc-CCCCEEEEEECCHHHHHHHHHHHHhhccccccCcc-eEEEeCcccccccccCCC
Confidence 45799999999999986433 22 2225999999999877 6666655566543 5 9999999977664 3689
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
|+|++...-.....+....++..+.+.|||||+++-.
T Consensus 104 D~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 104 DAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp SEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred CEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence 9999843322222222346888999999999987643
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.7e-11 Score=121.59 Aligned_cols=95 Identities=13% Similarity=0.072 Sum_probs=70.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSE 421 (626)
..+|||||||+|.++..+ ++ .+ .+|+|||.|+.++...+ .. . +|+++.+|++++..+ +.||+|++-
T Consensus 40 ~~~vLDvGcGtG~~~~~l---~~-~~--~~v~gvD~s~~ml~~a~-----~~-~-~v~~~~~~~e~~~~~~~sfD~v~~~ 106 (257)
T 4hg2_A 40 RGDALDCGCGSGQASLGL---AE-FF--ERVHAVDPGEAQIRQAL-----RH-P-RVTYAVAPAEDTGLPPASVDVAIAA 106 (257)
T ss_dssp SSEEEEESCTTTTTHHHH---HT-TC--SEEEEEESCHHHHHTCC-----CC-T-TEEEEECCTTCCCCCSSCEEEEEEC
T ss_pred CCCEEEEcCCCCHHHHHH---HH-hC--CEEEEEeCcHHhhhhhh-----hc-C-CceeehhhhhhhcccCCcccEEEEe
Confidence 468999999999998543 23 23 39999999997762211 11 2 599999999999875 689999984
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
..-++. ..+.++..+.|.|||||+++--.
T Consensus 107 ~~~h~~---~~~~~~~e~~rvLkpgG~l~~~~ 135 (257)
T 4hg2_A 107 QAMHWF---DLDRFWAELRRVARPGAVFAAVT 135 (257)
T ss_dssp SCCTTC---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eehhHh---hHHHHHHHHHHHcCCCCEEEEEE
Confidence 432322 24678999999999999986443
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-10 Score=117.46 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=79.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---CCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA---PEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~---p~k~Di 417 (626)
++.+|||+|||+|.++.. ++++.. .+|+|||.++.++ .++++...+++.++ |+++++|++++.. +++||+
T Consensus 49 ~~~~vLDlG~G~G~~~~~---la~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~~-v~~~~~D~~~~~~~~~~~~fD~ 122 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLL---LSTRTK--AKIVGVEIQERLADMAKRSVAYNQLEDQ-IEIIEYDLKKITDLIPKERADI 122 (259)
T ss_dssp SCCEEEETTCTTTHHHHH---HHTTCC--CEEEEECCSHHHHHHHHHHHHHTTCTTT-EEEECSCGGGGGGTSCTTCEEE
T ss_pred CCCEEEEcCCchhHHHHH---HHHhcC--CcEEEEECCHHHHHHHHHHHHHCCCccc-EEEEECcHHHhhhhhccCCccE
Confidence 467999999999999854 333322 3999999999877 78888888999887 9999999999863 478999
Q ss_pred EEeccccccC----C-----------CC---CcHHHHHHHHHhcccCcEEEe
Q psy17734 418 MVSELLGSFG----D-----------NE---LSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 418 IVSEllgsfg----~-----------~E---l~pe~L~~~~r~LkpgGi~IP 451 (626)
|++++.-+.. . .+ ...+++..+.++|||||.++-
T Consensus 123 Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 174 (259)
T 3lpm_A 123 VTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF 174 (259)
T ss_dssp EEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence 9998652111 0 00 123578888999999999874
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-09 Score=110.74 Aligned_cols=103 Identities=16% Similarity=0.083 Sum_probs=79.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..++ +..+ .+|+|+|.++.++ .+++.....++.++ |+++.+|+++++.+ ++||+|+
T Consensus 61 ~~~~vLDiGcG~G~~~~~l~---~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~fD~v~ 134 (273)
T 3bus_A 61 SGDRVLDVGCGIGKPAVRLA---TARD--VRVTGISISRPQVNQANARATAAGLANR-VTFSYADAMDLPFEDASFDAVW 134 (273)
T ss_dssp TTCEEEEESCTTSHHHHHHH---HHSC--CEEEEEESCHHHHHHHHHHHHHTTCTTT-EEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHH---HhcC--CEEEEEeCCHHHHHHHHHHHHhcCCCcc-eEEEECccccCCCCCCCccEEE
Confidence 56799999999999986433 3334 5999999999876 66666677788776 99999999998765 6899999
Q ss_pred eccc-cccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 420 SELL-GSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 420 SEll-gsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
+..+ .++ .....++..+.+.|||||.++-..
T Consensus 135 ~~~~l~~~---~~~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 135 ALESLHHM---PDRGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp EESCTTTS---SCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred EechhhhC---CCHHHHHHHHHHHcCCCeEEEEEE
Confidence 8432 222 223678999999999999887543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-10 Score=109.58 Aligned_cols=102 Identities=12% Similarity=0.087 Sum_probs=76.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-----CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-----PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-----p~k~ 415 (626)
++.+|||+|||+|.++..++ +. +. .+|+|+|.++.++ .++++...+++.++ ++++++|+.+... +++|
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~---~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~f 117 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAV---SR-GM-DKSICIEKNFAALKVIKENIAITKEPEK-FEVRKMDANRALEQFYEEKLQF 117 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHH---HT-TC-SEEEEEESCHHHHHHHHHHHHHHTCGGG-EEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCCEEEeCCccCHHHHHHH---Hc-CC-CEEEEEECCHHHHHHHHHHHHHhCCCcc-eEEEECcHHHHHHHHHhcCCCC
Confidence 46799999999999986433 32 22 4999999999877 77777777877555 9999999988532 4789
Q ss_pred cEEEeccccccCCCCCcHHHHHHH--HHhcccCcEEEec
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAA--QKYLKEDGISIPY 452 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~--~r~LkpgGi~IP~ 452 (626)
|+|++... +. ....+..+..+ .++|||||+++-.
T Consensus 118 D~i~~~~~--~~-~~~~~~~~~~l~~~~~L~~gG~l~~~ 153 (187)
T 2fhp_A 118 DLVLLDPP--YA-KQEIVSQLEKMLERQLLTNEAVIVCE 153 (187)
T ss_dssp EEEEECCC--GG-GCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred CEEEECCC--CC-chhHHHHHHHHHHhcccCCCCEEEEE
Confidence 99999765 22 22345666666 6789999987754
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.9e-10 Score=113.77 Aligned_cols=102 Identities=8% Similarity=0.079 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiI 418 (626)
++.+|||+|||+|.++..++.. + .+|+|+|.++.++ .+++.....++..+ |+++.+|+.++. .+++||+|
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~----~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~fD~v 140 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER----G--HQVILCDLSAQMIDRAKQAAEAKGVSDN-MQFIHCAAQDVASHLETPVDLI 140 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT----T--CEEEEEESCHHHHHHHHHHHHC-CCGGG-EEEEESCGGGTGGGCSSCEEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHC----C--CEEEEEECCHHHHHHHHHHHHhcCCCcc-eEEEEcCHHHhhhhcCCCceEE
Confidence 3579999999999998644332 3 4999999999877 66666666676555 999999999987 45799999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
++..+-... +....++..+.+.|||||.++-.
T Consensus 141 ~~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~~ 172 (285)
T 4htf_A 141 LFHAVLEWV--ADPRSVLQTLWSVLRPGGVLSLM 172 (285)
T ss_dssp EEESCGGGC--SCHHHHHHHHHHTEEEEEEEEEE
T ss_pred EECchhhcc--cCHHHHHHHHHHHcCCCeEEEEE
Confidence 985432222 23367899999999999998743
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=8.6e-11 Score=118.46 Aligned_cols=115 Identities=14% Similarity=0.179 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCC
Q psy17734 319 YIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQS 397 (626)
Q Consensus 319 y~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~ 397 (626)
|..+.+.+.+.+....+ ++.+|||+|||+|.++..+ ++ .+ .+|+|+|.++.++ .+++.. .
T Consensus 33 ~~~~~~~~~~~l~~~~~------~~~~vLDiGcG~G~~~~~l---~~-~~--~~v~gvD~s~~~~~~a~~~~-----~-- 93 (263)
T 3pfg_A 33 YHREAADLAALVRRHSP------KAASLLDVACGTGMHLRHL---AD-SF--GTVEGLELSADMLAIARRRN-----P-- 93 (263)
T ss_dssp HHHHHHHHHHHHHHHCT------TCCEEEEETCTTSHHHHHH---TT-TS--SEEEEEESCHHHHHHHHHHC-----T--
T ss_pred HHHHHHHHHHHHHhhCC------CCCcEEEeCCcCCHHHHHH---HH-cC--CeEEEEECCHHHHHHHHhhC-----C--
Confidence 34444455555544322 4579999999999998543 22 23 4899999999877 444332 1
Q ss_pred cEEEEEecccccCCCCCccEEEec--cccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 398 DVTIVSEDMRTWNAPEKADIMVSE--LLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 398 nV~vi~~D~~~~~~p~k~DiIVSE--llgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+|+++.+|++++..+++||+|++. .+.++...+....++..+.+.|||||.++-.
T Consensus 94 ~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 94 DAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp TSEEEECCTTTCCCSCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCEEEECChHHCCccCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 399999999998878899999985 3333322233456788999999999998864
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-10 Score=118.03 Aligned_cols=122 Identities=13% Similarity=0.131 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCC
Q psy17734 316 PIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQW 394 (626)
Q Consensus 316 ~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~ 394 (626)
..++..|.+.+...+... ++.+|||+|||+|.++..++.. + .+|+|+|.++.++ .++++....+.
T Consensus 39 ~~~~~~~~~~l~~~l~~~--------~~~~vLDiGcG~G~~~~~l~~~----~--~~v~gvD~s~~~l~~a~~~~~~~~~ 104 (293)
T 3thr_A 39 RSRTAEYKAWLLGLLRQH--------GCHRVLDVACGTGVDSIMLVEE----G--FSVTSVDASDKMLKYALKERWNRRK 104 (293)
T ss_dssp SCBCHHHHHHHHHHHHHT--------TCCEEEETTCTTSHHHHHHHHT----T--CEEEEEESCHHHHHHHHHHHHHTTT
T ss_pred cchHHHHHHHHHHHhccc--------CCCEEEEecCCCCHHHHHHHHC----C--CeEEEEECCHHHHHHHHHhhhhccc
Confidence 345566777777666531 4579999999999998654332 3 3999999999877 55554432221
Q ss_pred C---CCcEEEEEecccccC----CCCCccEEEe--ccccccCC----CCCcHHHHHHHHHhcccCcEEEec
Q psy17734 395 A---QSDVTIVSEDMRTWN----APEKADIMVS--ELLGSFGD----NELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 395 ~---~~nV~vi~~D~~~~~----~p~k~DiIVS--Ellgsfg~----~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
. . +++++.+|+.++. .+++||+|++ +.++++.+ .+....++..+.+.|||||.++-.
T Consensus 105 ~~~~~-~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 174 (293)
T 3thr_A 105 EPAFD-KWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 174 (293)
T ss_dssp SHHHH-TCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccccc-eeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 1 2 4899999998876 3479999998 45555544 222567899999999999998844
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.09 E-value=8.6e-10 Score=106.93 Aligned_cols=99 Identities=19% Similarity=0.157 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIV 419 (626)
++.+|||+|||+|.++..+++.+ ...+|+|+|.++.++ .++++...++. + +++++.+|+.+... .+++|+|+
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~-~-~v~~~~~d~~~~~~~~~~~D~i~ 113 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLM----PNGRIFALERNPQYLGFIRDNLKKFVA-R-NVTLVEAFAPEGLDDLPDPDRVF 113 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHC----TTSEEEEEECCHHHHHHHHHHHHHHTC-T-TEEEEECCTTTTCTTSCCCSEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHHC----CCCEEEEEeCCHHHHHHHHHHHHHhCC-C-cEEEEeCChhhhhhcCCCCCEEE
Confidence 56799999999999986544432 125999999999877 77777777787 4 49999999976533 36899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+.... +...+++..+.+.|||||.++-
T Consensus 114 ~~~~~-----~~~~~~l~~~~~~LkpgG~l~~ 140 (204)
T 3e05_A 114 IGGSG-----GMLEEIIDAVDRRLKSEGVIVL 140 (204)
T ss_dssp ESCCT-----TCHHHHHHHHHHHCCTTCEEEE
T ss_pred ECCCC-----cCHHHHHHHHHHhcCCCeEEEE
Confidence 85422 2457889999999999999885
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-10 Score=114.33 Aligned_cols=99 Identities=19% Similarity=0.166 Sum_probs=77.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC----CCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA----PEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~----p~k~D 416 (626)
++.+|||+|||+|.++..++.+. .+ .+|+|||.++.++ .++++...+++. ||+++++|++++.. +++||
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~--~~--~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~fD 143 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICF--PH--LHVTIVDSLNKRITFLEKLSEALQLE--NTTFCHDRAETFGQRKDVRESYD 143 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHC--TT--CEEEEEESCHHHHHHHHHHHHHHTCS--SEEEEESCHHHHTTCTTTTTCEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhC--CC--CEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEeccHHHhcccccccCCcc
Confidence 45799999999999986544322 22 5999999999876 777777777875 59999999998764 37899
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+|+|..+ .....++..+.++|||||.++-.
T Consensus 144 ~V~~~~~------~~~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 144 IVTARAV------ARLSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp EEEEECC------SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEEecc------CCHHHHHHHHHHhcCCCCEEEEE
Confidence 9998542 23577889999999999998753
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-10 Score=115.60 Aligned_cols=98 Identities=9% Similarity=-0.020 Sum_probs=78.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC----CCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA----PEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~----p~k~D 416 (626)
++.+|||||||+|.++..++.+. .+ .+|+|||.++.++ .++++...+++. ||+++++|++++.. .++||
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~--~~--~~v~~vD~s~~~~~~a~~~~~~~~l~--~v~~~~~d~~~~~~~~~~~~~fD 153 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVR--PE--LELVLVDATRKKVAFVERAIEVLGLK--GARALWGRAEVLAREAGHREAYA 153 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHC--TT--CEEEEEESCHHHHHHHHHHHHHHTCS--SEEEEECCHHHHTTSTTTTTCEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHC--CC--CEEEEEECCHHHHHHHHHHHHHhCCC--ceEEEECcHHHhhcccccCCCce
Confidence 46799999999999986544332 12 5999999999887 777787888886 59999999998864 37899
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+|+|..+. ..+.++..+.++|||||.++-
T Consensus 154 ~I~s~a~~------~~~~ll~~~~~~LkpgG~l~~ 182 (249)
T 3g89_A 154 RAVARAVA------PLCVLSELLLPFLEVGGAAVA 182 (249)
T ss_dssp EEEEESSC------CHHHHHHHHGGGEEEEEEEEE
T ss_pred EEEECCcC------CHHHHHHHHHHHcCCCeEEEE
Confidence 99995432 247788999999999999873
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.09 E-value=5.8e-10 Score=109.12 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=73.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEe
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVS 420 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVS 420 (626)
+.+|||+|||+|.++..++ + .+ .+|+|+|.++.++ .+++....++ . +++++.+|+.++..+ +++|+|++
T Consensus 39 ~~~vLDlG~G~G~~~~~l~---~-~~--~~v~~vD~s~~~~~~a~~~~~~~~--~-~~~~~~~d~~~~~~~~~~~D~v~~ 109 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLE---D-YG--FEVVGVDISEDMIRKAREYAKSRE--S-NVEFIVGDARKLSFEDKTFDYVIF 109 (227)
T ss_dssp CCEEEEETCTTSHHHHHHH---H-TT--CEEEEEESCHHHHHHHHHHHHHTT--C-CCEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCeEEEEeccCCHHHHHHH---H-cC--CEEEEEECCHHHHHHHHHHHHhcC--C-CceEEECchhcCCCCCCcEEEEEE
Confidence 5799999999999985433 2 23 2999999999877 6666655555 3 499999999998754 68999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
.....+...+...+++..+.+.|||||.++-
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 140 (227)
T 1ve3_A 110 IDSIVHFEPLELNQVFKEVRRVLKPSGKFIM 140 (227)
T ss_dssp ESCGGGCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCchHhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 6432222212235688899999999999874
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.07 E-value=9.4e-10 Score=107.69 Aligned_cols=104 Identities=14% Similarity=0.149 Sum_probs=76.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--C-CCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--A-PEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~-p~k~Di 417 (626)
++.+|||+|||+|.++..++.. .. ..+|+|||.++.++ .++++...+++. ||+++.+|+.++. . ++++|+
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~---~p-~~~v~gvD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~~~D~ 114 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQ---NP-DINYIGIDIQKSVLSYALDKVLEVGVP--NIKLLWVDGSDLTDYFEDGEIDR 114 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHH---CT-TSEEEEEESCHHHHHHHHHHHHHHCCS--SEEEEECCSSCGGGTSCTTCCSE
T ss_pred CCCeEEEEccCcCHHHHHHHHH---CC-CCCEEEEEcCHHHHHHHHHHHHHcCCC--CEEEEeCCHHHHHhhcCCCCCCE
Confidence 3578999999999998643332 21 25999999999887 777777777774 5999999999865 3 468999
Q ss_pred EEeccccccCC--CC----CcHHHHHHHHHhcccCcEEEe
Q psy17734 418 MVSELLGSFGD--NE----LSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 418 IVSEllgsfg~--~E----l~pe~L~~~~r~LkpgGi~IP 451 (626)
|++........ ++ ..++++..+.+.|||||+++-
T Consensus 115 i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 154 (214)
T 1yzh_A 115 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF 154 (214)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred EEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEE
Confidence 99864321110 00 136789999999999999764
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.5e-10 Score=114.00 Aligned_cols=102 Identities=11% Similarity=0.063 Sum_probs=78.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccc-cCCCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRT-WNAPEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~-~~~p~k~DiIV 419 (626)
++.+|+|||||+|.++..++.. +...+|+|+|.|+.++ .|+++++.+++.++ |+++.+|..+ ++..++||+|+
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~----~~~~~V~avDi~~~al~~A~~N~~~~gl~~~-i~~~~~d~l~~l~~~~~~D~Iv 89 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVER----GQIKSAIAGEVVEGPYQSAVKNVEAHGLKEK-IQVRLANGLAAFEETDQVSVIT 89 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHT----TSEEEEEEEESSHHHHHHHHHHHHHTTCTTT-EEEEECSGGGGCCGGGCCCEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHHHHcCCCce-EEEEECchhhhcccCcCCCEEE
Confidence 4679999999999999644332 3225999999999887 88999999999887 9999999854 44323799887
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.--+| .+.+.++++.+...|+++|.+|-+
T Consensus 90 iaG~G----g~~i~~Il~~~~~~L~~~~~lVlq 118 (225)
T 3kr9_A 90 IAGMG----GRLIARILEEGLGKLANVERLILQ 118 (225)
T ss_dssp EEEEC----HHHHHHHHHHTGGGCTTCCEEEEE
T ss_pred EcCCC----hHHHHHHHHHHHHHhCCCCEEEEE
Confidence 63332 244677888888899999887744
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-10 Score=113.71 Aligned_cols=100 Identities=11% Similarity=0.025 Sum_probs=69.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcC-----------CCCCcEEEEEeccccc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQ-----------WAQSDVTIVSEDMRTW 409 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~-----------~~~~nV~vi~~D~~~~ 409 (626)
++.+|||+|||+|.++..+++. | .+|+|||.|+.|+ .+++...... -.. +|+++++|+.++
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~----g--~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~l 94 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQ----G--YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAP-GIEIWCGDFFAL 94 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHH----C--CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECS-SSEEEEECCSSS
T ss_pred CCCEEEEeCCCCcHhHHHHHHC----C--CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCC-ccEEEECccccC
Confidence 4679999999999998654332 4 4999999999887 4443321100 023 499999999998
Q ss_pred CCC--CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcE
Q psy17734 410 NAP--EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGI 448 (626)
Q Consensus 410 ~~p--~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi 448 (626)
..+ ++||+|++...-.....+....++..+.+.|||||.
T Consensus 95 ~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~ 135 (203)
T 1pjz_A 95 TARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACS 135 (203)
T ss_dssp THHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEE
T ss_pred CcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcE
Confidence 764 689999984322222212224578889999999997
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-10 Score=115.23 Aligned_cols=103 Identities=24% Similarity=0.261 Sum_probs=76.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
..+|||+|||+|.++..+ ++ .+ .+|+|+|.++.++ .+++.....+..++ |+++.+|+.++..+++||+|++.
T Consensus 67 ~~~vLDiGcG~G~~~~~l---~~-~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~v~~~ 139 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAM---AS-PE--RFVVGLDISESALAKANETYGSSPKAEY-FSFVKEDVFTWRPTELFDLIFDY 139 (235)
T ss_dssp CEEEEEETCTTCHHHHHH---CB-TT--EEEEEECSCHHHHHHHHHHHTTSGGGGG-EEEECCCTTTCCCSSCEEEEEEE
T ss_pred CCCEEEeCCCCCHHHHHH---Hh-CC--CeEEEEECCHHHHHHHHHHhhccCCCcc-eEEEECchhcCCCCCCeeEEEEC
Confidence 359999999999998543 22 33 5999999999887 55555444444454 99999999998877899999984
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+-.....+....++..+.+.|||||.++-.
T Consensus 140 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 170 (235)
T 3lcc_A 140 VFFCAIEPEMRPAWAKSMYELLKPDGELITL 170 (235)
T ss_dssp SSTTTSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhcCCHHHHHHHHHHHHHHCCCCcEEEEE
Confidence 4322222334467889999999999998753
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.05 E-value=8e-10 Score=108.83 Aligned_cols=99 Identities=19% Similarity=0.210 Sum_probs=69.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc----CCCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW----NAPEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~----~~p~k~D 416 (626)
++.+|||+|||+|.++..++. ..+ ..+|+|||.++.++ .+++..+.. . ||+++.+|+++. ..+++||
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~---~~~-~~~V~gvD~s~~~l~~~~~~a~~~---~-~v~~~~~d~~~~~~~~~~~~~fD 128 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLAD---IVD-EGIIYAVEYSAKPFEKLLELVRER---N-NIIPLLFDASKPWKYSGIVEKVD 128 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHH---HTT-TSEEEEECCCHHHHHHHHHHHHHC---S-SEEEECSCTTCGGGTTTTCCCEE
T ss_pred CCCEEEEECCcCCHHHHHHHH---HcC-CCEEEEEECCHHHHHHHHHHHhcC---C-CeEEEEcCCCCchhhccccccee
Confidence 567999999999999864433 333 25999999999875 233332222 2 599999999874 3457899
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+|++... ..+....++..+.++|||||.++-.
T Consensus 129 ~V~~~~~----~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 129 LIYQDIA----QKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp EEEECCC----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEecc----ChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 9999732 1121233588899999999987754
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.4e-10 Score=110.20 Aligned_cols=98 Identities=17% Similarity=0.165 Sum_probs=72.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++..+ .+|+|+|.++.++ .+++.. . +++++.+|+.++..++++|+|++
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~------~~v~~~D~s~~~~~~a~~~~------~-~~~~~~~d~~~~~~~~~~D~v~~ 106 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEF------GDTAGLELSEDMLTHARKRL------P-DATLHQGDMRDFRLGRKFSAVVS 106 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHH------SEEEEEESCHHHHHHHHHHC------T-TCEEEECCTTTCCCSSCEEEEEE
T ss_pred CCCeEEEecccCCHHHHHHHHhC------CcEEEEeCCHHHHHHHHHhC------C-CCEEEECCHHHcccCCCCcEEEE
Confidence 45799999999999987554443 2899999999877 333321 2 49999999999877789999995
Q ss_pred -c-cccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 -E-LLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 -E-llgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
. .+.++...+....++..+.+.|||||.++-.
T Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (239)
T 3bxo_A 107 MFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVE 140 (239)
T ss_dssp CTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred cCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 2 3333322233456888999999999998854
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-09 Score=106.81 Aligned_cols=104 Identities=14% Similarity=0.101 Sum_probs=79.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..+++.. +...+|+|+|.++.++ .+++....++.. +++++.+|+.++..+ ++||+|+
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~---~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~ 111 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMV---GEKGKVYAIDVQEEMVNYAWEKVNKLGLK--NVEVLKSEENKIPLPDNTVDFIF 111 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHH---TTTCEEEEEESCHHHHHHHHHHHHHHTCT--TEEEEECBTTBCSSCSSCEEEEE
T ss_pred CCCEEEEEecCCCHHHHHHHHHh---CCCcEEEEEECCHHHHHHHHHHHHHcCCC--cEEEEecccccCCCCCCCeeEEE
Confidence 56799999999999987655544 2225999999999877 666666677765 499999999998754 6799999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+...-... +....++..+.+.|||||.++-.
T Consensus 112 ~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~i~ 142 (219)
T 3dh0_A 112 MAFTFHEL--SEPLKFLEELKRVAKPFAYLAII 142 (219)
T ss_dssp EESCGGGC--SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred eehhhhhc--CCHHHHHHHHHHHhCCCeEEEEE
Confidence 85432221 23467899999999999998754
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.05 E-value=4e-10 Score=110.01 Aligned_cols=99 Identities=17% Similarity=0.238 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++.. + .+|+|+|.++.++ .+++... . +++++.+|+.++..+++||+|++
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~----~--~~v~~vD~s~~~~~~a~~~~~-----~-~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLA----G--RTVYGIEPSREMRMIAKEKLP-----K-EFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHT----T--CEEEEECSCHHHHHHHHHHSC-----T-TCCEESCCSSSCCCCSCCSEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHhC----C--CeEEEEeCCHHHHHHHHHhCC-----C-ceEEEeCChhhcCCCCCeEEEEE
Confidence 4679999999999998654332 3 4999999999877 4443321 3 49999999999887789999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
...-..........+|..+.+.|||||.++-.
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 144 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFA 144 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CcchhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 54322221111133788999999999998854
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=6.7e-10 Score=107.81 Aligned_cols=100 Identities=10% Similarity=0.106 Sum_probs=73.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
++.+|||+|||+|.++..++.. + .+|+|+|.++.++...+. .+. . +++++.+|+.++..+++||+|++.
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~----~--~~v~~~D~s~~~~~~a~~---~~~-~-~~~~~~~d~~~~~~~~~~D~v~~~ 114 (218)
T 3ou2_A 46 IRGDVLELASGTGYWTRHLSGL----A--DRVTALDGSAEMIAEAGR---HGL-D-NVEFRQQDLFDWTPDRQWDAVFFA 114 (218)
T ss_dssp SCSEEEEESCTTSHHHHHHHHH----S--SEEEEEESCHHHHHHHGG---GCC-T-TEEEEECCTTSCCCSSCEEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhc----C--CeEEEEeCCHHHHHHHHh---cCC-C-CeEEEecccccCCCCCceeEEEEe
Confidence 4569999999999998654443 3 499999999987743332 443 3 599999999998556899999985
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..-.....+....++..+.+.|||||.++-.
T Consensus 115 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 145 (218)
T 3ou2_A 115 HWLAHVPDDRFEAFWESVRSAVAPGGVVEFV 145 (218)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 4323322222356788999999999998754
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-09 Score=111.64 Aligned_cols=102 Identities=14% Similarity=0.101 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..+++. .+ .+|+|+|.++.++ .+++.....++.++ |+++.+|+.+++.+ ++||+|+
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~~~---~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~fD~v~ 155 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLVRK---FG--VSIDCLNIAPVQNKRNEEYNNQAGLADN-ITVKYGSFLEIPCEDNSYDFIW 155 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHHHH---HC--CEEEEEESCHHHHHHHHHHHHHHTCTTT-EEEEECCTTSCSSCTTCEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHH---hC--CEEEEEeCCHHHHHHHHHHHHhcCCCcc-eEEEEcCcccCCCCCCCEeEEE
Confidence 5679999999999998654433 24 4999999999876 66666677788776 99999999998764 6899999
Q ss_pred ecc-ccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SEL-LGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEl-lgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.. +.++.+ ...++..+.+.|||||.++-.
T Consensus 156 ~~~~l~~~~~---~~~~l~~~~~~LkpgG~l~~~ 186 (297)
T 2o57_A 156 SQDAFLHSPD---KLKVFQECARVLKPRGVMAIT 186 (297)
T ss_dssp EESCGGGCSC---HHHHHHHHHHHEEEEEEEEEE
T ss_pred ecchhhhcCC---HHHHHHHHHHHcCCCeEEEEE
Confidence 843 333322 467899999999999998754
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-10 Score=120.23 Aligned_cols=103 Identities=18% Similarity=0.103 Sum_probs=74.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCC--CCcEEEEEecccccCCCCCccEEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWA--QSDVTIVSEDMRTWNAPEKADIMV 419 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~--~~nV~vi~~D~~~~~~p~k~DiIV 419 (626)
+.+|||||||+|.++..++.. + .+|+|+|.++.++ .+++.....+.+ .+ |+++.+|+.++..+++||+||
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~~----~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~v~ 155 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLDL----G--WEVTALELSTSVLAAFRKRLAEAPADVRDR-CTLVQGDMSAFALDKRFGTVV 155 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHTT----T--CCEEEEESCHHHHHHHHHHHHTSCHHHHTT-EEEEECBTTBCCCSCCEEEEE
T ss_pred CCcEEEEeccCCHHHHHHHHc----C--CeEEEEECCHHHHHHHHHHHhhcccccccc-eEEEeCchhcCCcCCCcCEEE
Confidence 348999999999998643322 3 4899999999877 555555444321 44 999999999998888999888
Q ss_pred ec-cccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SE-LLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SE-llgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+. .+-.+...+....+|..+.+.|||||.++-.
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 189 (299)
T 3g2m_A 156 ISSGSINELDEADRRGLYASVREHLEPGGKFLLS 189 (299)
T ss_dssp ECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 52 2222222222466889999999999998754
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.04 E-value=6.6e-10 Score=108.32 Aligned_cols=101 Identities=14% Similarity=0.142 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc-CC-CCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW-NA-PEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~-~~-p~k~DiI 418 (626)
++.+|||+|||+|.++..++ ++ +. .+|+|||.++.++ .++++...++. + +|+++++|+.++ .. .++||+|
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~---~~-~~-~~V~~vD~s~~~l~~a~~~~~~~~~-~-~v~~~~~D~~~~~~~~~~~fD~V 126 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEAL---SR-YA-AGATLIEMDRAVSQQLIKNLATLKA-G-NARVVNSNAMSFLAQKGTPHNIV 126 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHH---HT-TC-SEEEEECSCHHHHHHHHHHHHHTTC-C-SEEEECSCHHHHHSSCCCCEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHH---hc-CC-CEEEEEECCHHHHHHHHHHHHHcCC-C-cEEEEECCHHHHHhhcCCCCCEE
Confidence 35789999999999986433 22 22 3999999999887 77777777877 4 499999999884 32 3689999
Q ss_pred EeccccccCCCCCcHHHHHHHHH--hcccCcEEEec
Q psy17734 419 VSELLGSFGDNELSPECLYAAQK--YLKEDGISIPY 452 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r--~LkpgGi~IP~ 452 (626)
++... |. .+..++++..+.+ +|||||+++-.
T Consensus 127 ~~~~p--~~-~~~~~~~l~~l~~~~~L~pgG~l~i~ 159 (202)
T 2fpo_A 127 FVDPP--FR-RGLLEETINLLEDNGWLADEALIYVE 159 (202)
T ss_dssp EECCS--SS-TTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred EECCC--CC-CCcHHHHHHHHHhcCccCCCcEEEEE
Confidence 99775 22 2334667777755 59999998754
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.04 E-value=7e-10 Score=113.55 Aligned_cols=97 Identities=21% Similarity=0.185 Sum_probs=78.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..+++. .+. .+|+|||.|+.++ .++++.+.|++. |++++++|++++...+++|+|++
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~---~~~-~~V~~vD~s~~av~~a~~n~~~n~l~--~~~~~~~d~~~~~~~~~~D~Vi~ 192 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKY---SKP-KLVYAIEKNPTAYHYLCENIKLNKLN--NVIPILADNRDVELKDVADRVIM 192 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHH---TCC-SEEEEEECCHHHHHHHHHHHHHTTCS--SEEEEESCGGGCCCTTCEEEEEE
T ss_pred CCCEEEEecCcCCHHHHHHHHh---CCC-CEEEEEeCCHHHHHHHHHHHHHcCCC--CEEEEECChHHcCccCCceEEEE
Confidence 5679999999999999654433 222 5999999999887 777888888886 59999999999833468999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.+.. ...+++..+.+.|||||+++
T Consensus 193 d~p~------~~~~~l~~~~~~LkpgG~l~ 216 (272)
T 3a27_A 193 GYVH------KTHKFLDKTFEFLKDRGVIH 216 (272)
T ss_dssp CCCS------SGGGGHHHHHHHEEEEEEEE
T ss_pred CCcc------cHHHHHHHHHHHcCCCCEEE
Confidence 7653 34567888889999999987
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.04 E-value=5.2e-10 Score=113.63 Aligned_cols=105 Identities=13% Similarity=0.105 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH---cCCCCCcEEEEEecccccC-------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE---EQWAQSDVTIVSEDMRTWN------- 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~---n~~~~~nV~vi~~D~~~~~------- 410 (626)
++.+|||+|||+|.++..++.. .. ..+|+|||.++.++ .++++... +++.++ |+++++|+.++.
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~---~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~-v~~~~~D~~~~~~~~~~~~ 110 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAAR---LE-KAEVTLYERSQEMAEFARRSLELPDNAAFSAR-IEVLEADVTLRAKARVEAG 110 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHH---CT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGG-EEEEECCTTCCHHHHHHTT
T ss_pred CCCEEEEeCChHhHHHHHHHHh---CC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcce-EEEEeCCHHHHhhhhhhhc
Confidence 4578999999999998654433 21 25999999999877 77777777 888777 999999999872
Q ss_pred -CCCCccEEEeccccccC----------------CCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 411 -APEKADIMVSELLGSFG----------------DNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 411 -~p~k~DiIVSEllgsfg----------------~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
.+++||+|++++.-... .......++..+.++|||||.++-
T Consensus 111 ~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 168 (260)
T 2ozv_A 111 LPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL 168 (260)
T ss_dssp CCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred cCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence 24789999998542111 112246688889999999998763
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.04 E-value=9e-10 Score=110.74 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=76.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++.. .++. + .+|+|+|.++.++ .+++....++.. +|+++.+|+++++.+ ++||+|+
T Consensus 37 ~~~~vLDiGcG~G~~~~~---l~~~-~--~~v~gvD~s~~~l~~a~~~~~~~~~~--~v~~~~~d~~~l~~~~~~fD~V~ 108 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANA---FAPF-V--KKVVAFDLTEDILKVARAFIEGNGHQ--QVEYVQGDAEQMPFTDERFHIVT 108 (260)
T ss_dssp SCCEEEEETCTTCHHHHH---HGGG-S--SEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEECCC-CCCSCTTCEEEEE
T ss_pred CCCEEEEEeCCCCHHHHH---HHHh-C--CEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEecHHhCCCCCCCEEEEE
Confidence 567999999999999853 3332 3 3999999999877 666666666665 599999999998865 7899999
Q ss_pred ecc-ccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SEL-LGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEl-lgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.. +.++ ...+.+|..+.+.|||||.++-.
T Consensus 109 ~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~~~ 139 (260)
T 1vl5_A 109 CRIAAHHF---PNPASFVSEAYRVLKKGGQLLLV 139 (260)
T ss_dssp EESCGGGC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred EhhhhHhc---CCHHHHHHHHHHHcCCCCEEEEE
Confidence 964 3332 22467899999999999988753
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.8e-10 Score=112.30 Aligned_cols=102 Identities=13% Similarity=-0.009 Sum_probs=80.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCC-CccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPE-KADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~-k~DiIV 419 (626)
++.+|+|||||+|.++..+ ++. +...+|+|+|.++.++ .|+++++.+++.++ |+++.+|..+...+. +||+||
T Consensus 21 ~g~~VlDIGtGsG~l~i~l---a~~-~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~-I~~~~gD~l~~~~~~~~~D~Iv 95 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFL---LQM-GYCDFAIAGEVVNGPYQSALKNVSEHGLTSK-IDVRLANGLSAFEEADNIDTIT 95 (230)
T ss_dssp TTEEEEEETCSTTHHHHHH---HHT-TCEEEEEEEESSHHHHHHHHHHHHHTTCTTT-EEEEECSGGGGCCGGGCCCEEE
T ss_pred CCCEEEEECCchHHHHHHH---HHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCc-EEEEECchhhccccccccCEEE
Confidence 4679999999999999643 332 3225899999999887 88899999999888 999999998876554 799987
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.--|| .+.+.++|+...+.|+++|.+|-+
T Consensus 96 iaGmG----g~lI~~IL~~~~~~l~~~~~lIlq 124 (230)
T 3lec_A 96 ICGMG----GRLIADILNNDIDKLQHVKTLVLQ 124 (230)
T ss_dssp EEEEC----HHHHHHHHHHTGGGGTTCCEEEEE
T ss_pred EeCCc----hHHHHHHHHHHHHHhCcCCEEEEE
Confidence 63333 245677888888889999977643
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=9.7e-10 Score=112.06 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=76.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--CCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--PEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--p~k~DiI 418 (626)
++.+|||+|||+|.++..++.. +. .+|+|+|.++.++ .+++.....+...+ |+++.+|+.+... +++||+|
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~----~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~fD~v 137 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERA----GI-GEYYGVDIAEVSINDARVRARNMKRRFK-VFFRAQDSYGRHMDLGKEFDVI 137 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHH----TC-SEEEEEESCHHHHHHHHHHHHTSCCSSE-EEEEESCTTTSCCCCSSCEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHC----CC-CEEEEEECCHHHHHHHHHHHHhcCCCcc-EEEEECCccccccCCCCCcCEE
Confidence 5679999999999988653332 21 4999999999877 66666666666555 9999999998765 4789999
Q ss_pred Eecccccc--CCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 419 VSELLGSF--GDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 419 VSEllgsf--g~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
++...-+. ...+....++..+.+.|||||.++-
T Consensus 138 ~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 172 (298)
T 1ri5_A 138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 172 (298)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred EECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 98542221 1112235688899999999999874
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4e-10 Score=114.34 Aligned_cols=102 Identities=7% Similarity=-0.105 Sum_probs=71.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH----------cC------CCCCcEEEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE----------EQ------WAQSDVTIVSE 404 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~----------n~------~~~~nV~vi~~ 404 (626)
++.+|||+|||+|.++..+++ .| .+|+|||.|+.++ .+++.... ++ -.. +|+++++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~----~G--~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~ 140 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFAD----RG--HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSG-SISLYCC 140 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHH----TT--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTS-SEEEEES
T ss_pred CCCeEEEeCCCCcHHHHHHHH----CC--CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCC-ceEEEEC
Confidence 457999999999999864333 24 4999999999887 44332210 00 123 4999999
Q ss_pred cccccCCC--CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 405 DMRTWNAP--EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 405 D~~~~~~p--~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|+.++..+ ++||+|++...-.....+....++..+.+.|||||+++
T Consensus 141 D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~ 188 (252)
T 2gb4_A 141 SIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYL 188 (252)
T ss_dssp CTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEE
T ss_pred ccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 99998764 78999998432222222223567889999999999975
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.02 E-value=9.2e-10 Score=106.55 Aligned_cols=98 Identities=11% Similarity=0.054 Sum_probs=77.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
+.+|||+|||+|.++..++... .+ .+|+|+|.++.+. .+.++...++.. +|+++.+|+.++..+++||+|++.
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~--~~--~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~D~i~~~ 139 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVR--PE--AHFTLLDSLGKRVRFLRQVQHELKLE--NIEPVQSRVEEFPSEPPFDGVISR 139 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHC--TT--SEEEEEESCHHHHHHHHHHHHHTTCS--SEEEEECCTTTSCCCSCEEEEECS
T ss_pred CCeEEEECCCCCHHHHHHHHHC--CC--CEEEEEeCCHHHHHHHHHHHHHcCCC--CeEEEecchhhCCccCCcCEEEEe
Confidence 5799999999999986544332 12 5999999999877 666666667765 599999999998756789999984
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+ +....++..+.+.|||||.++-.
T Consensus 140 ~~------~~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 140 AF------ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp CS------SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred cc------CCHHHHHHHHHHhcCCCcEEEEE
Confidence 32 33567889999999999998865
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.9e-10 Score=112.80 Aligned_cols=103 Identities=11% Similarity=-0.023 Sum_probs=73.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---CCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA---PEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~---p~k~Di 417 (626)
++.+|||||||+|..+.. .++..+ .+|++||.+|.++ .+++.....+. +++++.+|.+++.. .++||.
T Consensus 60 ~G~rVLdiG~G~G~~~~~---~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~FD~ 131 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASK---VQEAPI--DEHWIIECNDGVFQRLRDWAPRQTH---KVIPLKGLWEDVAPTLPDGHFDG 131 (236)
T ss_dssp TCEEEEEECCTTSHHHHH---HTTSCE--EEEEEEECCHHHHHHHHHHGGGCSS---EEEEEESCHHHHGGGSCTTCEEE
T ss_pred CCCeEEEECCCccHHHHH---HHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCC---ceEEEeehHHhhcccccccCCce
Confidence 567999999999998753 233222 4899999999877 55555444433 49999999887642 367999
Q ss_pred EEeccccccCCCCC---cHHHHHHHHHhcccCcEEEec
Q psy17734 418 MVSELLGSFGDNEL---SPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 418 IVSEllgsfg~~El---~pe~L~~~~r~LkpgGi~IP~ 452 (626)
|+.+...+....+. .+.+++.+.|+|||||+++..
T Consensus 132 i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 132 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred EEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 98776433322222 246788899999999998754
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.02 E-value=6.9e-10 Score=105.20 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=77.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCC-CcEEEEEecccccCCCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQ-SDVTIVSEDMRTWNAPEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~-~nV~vi~~D~~~~~~p~k~DiIV 419 (626)
++.+|||+|||+|.++.. +++. + .+|+|+|.++.++ .+++....++..+ + ++++.+|+.+...++++|+|+
T Consensus 52 ~~~~vLdiG~G~G~~~~~---~~~~-~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~D~v~ 124 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIA---LADE-V--KSTTMADINRRAIKLAKENIKLNNLDNYD-IRVVHSDLYENVKDRKYNKII 124 (194)
T ss_dssp TTCEEEEETCTTSHHHHH---HGGG-S--SEEEEEESCHHHHHHHHHHHHHTTCTTSC-EEEEECSTTTTCTTSCEEEEE
T ss_pred CCCeEEEeCCCCCHHHHH---HHHc-C--CeEEEEECCHHHHHHHHHHHHHcCCCccc-eEEEECchhcccccCCceEEE
Confidence 567999999999999854 3333 3 5999999999877 6677777777764 4 999999998865567899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+...-.. ..+....++..+.+.|||||.++-.
T Consensus 125 ~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~ 156 (194)
T 1dus_A 125 TNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp ECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCccc-chhHHHHHHHHHHHHcCCCCEEEEE
Confidence 9653211 0122356888899999999988744
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.5e-10 Score=110.37 Aligned_cols=105 Identities=10% Similarity=0.046 Sum_probs=82.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCC-CCcEEEEEecccccC--C-CCCccE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWA-QSDVTIVSEDMRTWN--A-PEKADI 417 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~-~~nV~vi~~D~~~~~--~-p~k~Di 417 (626)
+.+|||+|||+|..+..++++.. ...+|++||.++.+. .++++....++. ++ |+++.+|+.++. . +++||+
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~---~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~-i~~~~gda~~~l~~~~~~~fD~ 132 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLA---DNTTLTCIDPESEHQRQAKALFREAGYSPSR-VRFLLSRPLDVMSRLANDSYQL 132 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSC---TTSEEEEECSCHHHHHHHHHHHHHTTCCGGG-EEEECSCHHHHGGGSCTTCEEE
T ss_pred CCCEEEEcCCchHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCcCc-EEEEEcCHHHHHHHhcCCCcCe
Confidence 34899999999999976554432 125999999999876 788888888887 66 999999998762 3 478999
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEEecccee
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTS 456 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~ 456 (626)
|++.. ..+..+++++.+.+.|||||+++-+....
T Consensus 133 V~~d~-----~~~~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 133 VFGQV-----SPMDLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp EEECC-----CTTTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred EEEcC-----cHHHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 98853 23345778999999999999999876554
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.02 E-value=7.1e-10 Score=110.36 Aligned_cols=103 Identities=16% Similarity=0.188 Sum_probs=80.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---CCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA---PEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~---p~k~Di 417 (626)
++.+|||+|||+|.++..++.+. ...+|++||.++.++ .++++....++.++ |+++.+|+.+... +++||+
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~fD~ 145 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASIS----DDIHVTTIERNETMIQYAKQNLATYHFENQ-VRIIEGNALEQFENVNDKVYDM 145 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTC----TTCEEEEEECCHHHHHHHHHHHHHTTCTTT-EEEEESCGGGCHHHHTTSCEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHhC----CCCEEEEEECCHHHHHHHHHHHHHcCCCCc-EEEEECCHHHHHHhhccCCccE
Confidence 45799999999999986544321 125999999999876 77777778888776 9999999988633 579999
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
|++.. ..+..+.+++.+.+.|||||+++-+..
T Consensus 146 V~~~~-----~~~~~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 146 IFIDA-----AKAQSKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp EEEET-----TSSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred EEEcC-----cHHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence 99742 234457789999999999999987543
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=7.9e-10 Score=109.54 Aligned_cols=103 Identities=12% Similarity=0.122 Sum_probs=75.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc----CCCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW----NAPEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~----~~p~k~D 416 (626)
++.+|||||||+|.++..++.. . ...+|+|||.++.++ .++++...++.. ||+++.+|++++ -.++.+|
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~---~-p~~~v~giD~s~~~l~~a~~~~~~~~l~--nv~~~~~Da~~~l~~~~~~~~~d 107 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKD---R-PEQDFLGIEVHSPGVGACLASAHEEGLS--NLRVMCHDAVEVLHKMIPDNSLR 107 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHH---C-TTSEEEEECSCHHHHHHHHHHHHHTTCS--SEEEECSCHHHHHHHHSCTTCEE
T ss_pred CCCeEEEEeeeChHHHHHHHHH---C-CCCeEEEEEecHHHHHHHHHHHHHhCCC--cEEEEECCHHHHHHHHcCCCChh
Confidence 4568999999999998643332 2 225899999999877 777777777776 699999999885 2357899
Q ss_pred EEEeccccccCCCC------CcHHHHHHHHHhcccCcEEE
Q psy17734 417 IMVSELLGSFGDNE------LSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 417 iIVSEllgsfg~~E------l~pe~L~~~~r~LkpgGi~I 450 (626)
.|++.....+.... ..++++..+.+.|||||+++
T Consensus 108 ~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~ 147 (218)
T 3dxy_A 108 MVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFH 147 (218)
T ss_dssp EEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEE
T ss_pred eEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEE
Confidence 99885332221111 12568999999999999976
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-09 Score=108.14 Aligned_cols=104 Identities=13% Similarity=0.090 Sum_probs=76.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc-C-CC-----C
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW-N-AP-----E 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~-~-~p-----~ 413 (626)
++.+|||+|||+|.++..++++. +...+|++||.++.++ .++++...+++.++ |+++.+|+.+. + .+ +
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~~ 133 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLL---QPGARLLTMEINPDCAAITQQMLNFAGLQDK-VTILNGASQDLIPQLKKKYDVD 133 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTS---CTTCEEEEEESCHHHHHHHHHHHHHHTCGGG-EEEEESCHHHHGGGTTTTSCCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhC---CCCCEEEEEeCChHHHHHHHHHHHHcCCCCc-eEEEECCHHHHHHHHHHhcCCC
Confidence 45789999999999986544332 2125999999999776 78888888888776 99999998764 2 22 5
Q ss_pred CccEEEeccccccCCCCCcH---HHHHHHHHhcccCcEEEeccce
Q psy17734 414 KADIMVSELLGSFGDNELSP---ECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~p---e~L~~~~r~LkpgGi~IP~~~t 455 (626)
+||+|++.... ...+ +.+..+ ++|||||+++-+...
T Consensus 134 ~fD~V~~d~~~-----~~~~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 134 TLDMVFLDHWK-----DRYLPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp CCSEEEECSCG-----GGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred ceEEEEEcCCc-----ccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 89999985421 1122 345555 899999999987765
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.8e-10 Score=112.57 Aligned_cols=102 Identities=14% Similarity=0.025 Sum_probs=79.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCC-CccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPE-KADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~-k~DiIV 419 (626)
++.+|||||||+|.++..++ +. +...+|+|+|.|+.++ .|+++++.+++.++ |+++.+|..+...+. +||+||
T Consensus 21 ~g~~VlDIGtGsG~l~i~la---~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~-I~v~~gD~l~~~~~~~~~D~Iv 95 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAV---KN-QTASFAIAGEVVDGPFQSAQKQVRSSGLTEQ-IDVRKGNGLAVIEKKDAIDTIV 95 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHH---HT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTT-EEEEECSGGGGCCGGGCCCEEE
T ss_pred CCCEEEEECCccHHHHHHHH---Hh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCce-EEEEecchhhccCccccccEEE
Confidence 46799999999999996433 32 3225899999999887 88899999999887 999999998866554 699988
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+--+| .+.+.++|+...+.|+++|.+|-+
T Consensus 96 iagmG----g~lI~~IL~~~~~~L~~~~~lIlq 124 (244)
T 3gnl_A 96 IAGMG----GTLIRTILEEGAAKLAGVTKLILQ 124 (244)
T ss_dssp EEEEC----HHHHHHHHHHTGGGGTTCCEEEEE
T ss_pred EeCCc----hHHHHHHHHHHHHHhCCCCEEEEE
Confidence 63332 245677888888889998887744
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=6.3e-10 Score=110.60 Aligned_cols=105 Identities=14% Similarity=0.027 Sum_probs=73.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc--CCC-CCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW--NAP-EKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~--~~p-~k~Di 417 (626)
++.+|||||||+|.++..+ ++ .+. .+|+|||.++.++ .+++....++ . +|+++.+|++++ ..+ ++||+
T Consensus 60 ~~~~vLDiGcGtG~~~~~l---~~-~~~-~~v~gvD~s~~~l~~a~~~~~~~~--~-~v~~~~~d~~~~~~~~~~~~fD~ 131 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKV---QE-API-DEHWIIECNDGVFQRLRDWAPRQT--H-KVIPLKGLWEDVAPTLPDGHFDG 131 (236)
T ss_dssp TCEEEEEECCTTSHHHHHH---HT-SCE-EEEEEEECCHHHHHHHHHHGGGCS--S-EEEEEESCHHHHGGGSCTTCEEE
T ss_pred CCCeEEEEeccCCHHHHHH---Hh-cCC-CeEEEEcCCHHHHHHHHHHHHhcC--C-CeEEEecCHHHhhcccCCCceEE
Confidence 4678999999999998543 22 222 3899999999877 5555544444 3 499999999988 554 68999
Q ss_pred EEecccc-ccCCCCC--cHHHHHHHHHhcccCcEEEeccc
Q psy17734 418 MVSELLG-SFGDNEL--SPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 418 IVSEllg-sfg~~El--~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
|++.... +...... ...++..+.+.|||||+++-...
T Consensus 132 V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 132 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred EEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 9994222 1111111 13568889999999999885443
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=109.26 Aligned_cols=102 Identities=14% Similarity=0.081 Sum_probs=75.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..++..+ . .+|+++|.++.++ .+++..... . +++++.+|+.++..+ ++||+|+
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~---~--~~v~~vD~s~~~~~~a~~~~~~~---~-~~~~~~~d~~~~~~~~~~fD~v~ 163 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKL---Y--ATTDLLEPVKHMLEEAKRELAGM---P-VGKFILASMETATLPPNTYDLIV 163 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHH---C--SEEEEEESCHHHHHHHHHHTTTS---S-EEEEEESCGGGCCCCSSCEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHhh---c--CEEEEEeCCHHHHHHHHHHhccC---C-ceEEEEccHHHCCCCCCCeEEEE
Confidence 56799999999999987655443 1 4899999999877 444443222 3 599999999998754 6899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+...-.....+....++..+.+.|||||.++-.
T Consensus 164 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 196 (254)
T 1xtp_A 164 IQWTAIYLTDADFVKFFKHCQQALTPNGYIFFK 196 (254)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 854333322223467889999999999987754
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.4e-09 Score=100.70 Aligned_cols=98 Identities=14% Similarity=0.125 Sum_probs=72.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccc-cCCC-CCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRT-WNAP-EKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~-~~~p-~k~DiI 418 (626)
++.+|||+|||+|.++..+ ++..+ ..+|+|+|.++.+. .++++...++..++ + ++.+|..+ ++.. ++||+|
T Consensus 25 ~~~~vldiG~G~G~~~~~l---~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~-~~~~d~~~~~~~~~~~~D~i 98 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEW---LRSTP-QTTAVCFEISEERRERILSNAINLGVSDR-I-AVQQGAPRAFDDVPDNPDVI 98 (178)
T ss_dssp TTEEEEEESTTTTHHHHHH---HTTSS-SEEEEEECSCHHHHHHHHHHHHTTTCTTS-E-EEECCTTGGGGGCCSCCSEE
T ss_pred CCCeEEEeCCCCCHHHHHH---HHHCC-CCeEEEEeCCHHHHHHHHHHHHHhCCCCC-E-EEecchHhhhhccCCCCCEE
Confidence 5679999999999998543 33322 25999999999776 77777777777666 9 88899854 3332 789999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
++.... .. ..++..+.+.|||||.++-
T Consensus 99 ~~~~~~----~~--~~~l~~~~~~L~~gG~l~~ 125 (178)
T 3hm2_A 99 FIGGGL----TA--PGVFAAAWKRLPVGGRLVA 125 (178)
T ss_dssp EECC-T----TC--TTHHHHHHHTCCTTCEEEE
T ss_pred EECCcc----cH--HHHHHHHHHhcCCCCEEEE
Confidence 974321 11 5688999999999999874
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-09 Score=110.66 Aligned_cols=101 Identities=14% Similarity=0.103 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++.. .++......+|+|+|.++.+. .+++.....+. ||+++.+|+.++..+++||+|++
T Consensus 22 ~~~~vLDiGcG~G~~~~~---l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---~v~~~~~d~~~~~~~~~fD~v~~ 95 (284)
T 3gu3_A 22 KPVHIVDYGCGYGYLGLV---LMPLLPEGSKYTGIDSGETLLAEARELFRLLPY---DSEFLEGDATEIELNDKYDIAIC 95 (284)
T ss_dssp SCCEEEEETCTTTHHHHH---HTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS---EEEEEESCTTTCCCSSCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHH---HHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC---ceEEEEcchhhcCcCCCeeEEEE
Confidence 567999999999999854 333322125999999999877 55555444443 59999999999888889999998
Q ss_pred ccc-cccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 421 ELL-GSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ell-gsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
..+ +++ ...+.++..+.+.|||||.++-
T Consensus 96 ~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~ 124 (284)
T 3gu3_A 96 HAFLLHM---TTPETMLQKMIHSVKKGGKIIC 124 (284)
T ss_dssp ESCGGGC---SSHHHHHHHHHHTEEEEEEEEE
T ss_pred CChhhcC---CCHHHHHHHHHHHcCCCCEEEE
Confidence 553 322 2346789999999999999873
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.01 E-value=9.7e-10 Score=102.54 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=73.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-----CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-----PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-----p~k~ 415 (626)
++.+|||+|||+|.++..++ + .+. +|+|+|.++.++ .++++...++. + ++++++|+.+... .++|
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~---~-~~~--~v~~vD~~~~~~~~a~~~~~~~~~--~-~~~~~~d~~~~~~~~~~~~~~~ 111 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAA---S-EGW--EAVLVEKDPEAVRLLKENVRRTGL--G-ARVVALPVEVFLPEAKAQGERF 111 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHH---H-TTC--EEEEECCCHHHHHHHHHHHHHHTC--C-CEEECSCHHHHHHHHHHTTCCE
T ss_pred CCCeEEEeCCCcCHHHHHHH---H-CCC--eEEEEeCCHHHHHHHHHHHHHcCC--c-eEEEeccHHHHHHhhhccCCce
Confidence 35789999999999986433 3 232 599999999877 77777777776 4 9999999987421 2479
Q ss_pred cEEEeccccccCCCCCcHHHHHHHH--HhcccCcEEEecc
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQ--KYLKEDGISIPYN 453 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~--r~LkpgGi~IP~~ 453 (626)
|+|++... +. +..++.+..+. +.|||||+++-..
T Consensus 112 D~i~~~~~--~~--~~~~~~~~~~~~~~~L~~gG~~~~~~ 147 (171)
T 1ws6_A 112 TVAFMAPP--YA--MDLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp EEEEECCC--TT--SCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred EEEEECCC--Cc--hhHHHHHHHHHhhcccCCCcEEEEEe
Confidence 99999764 22 33456777666 8999999987543
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.01 E-value=2.7e-10 Score=107.74 Aligned_cols=102 Identities=15% Similarity=0.060 Sum_probs=75.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc-C-CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW-N-APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~-~-~p~k~DiI 418 (626)
++.+|||+|||+|.++..++ +. +. .+|+|+|.++.++ .++++...+++.++ ++++.+|+.++ . .+++||+|
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~---~~-~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~fD~i 104 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAV---SR-GM-SAAVLVEKNRKAQAIIQDNIIMTKAENR-FTLLKMEAERAIDCLTGRFDLV 104 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHH---HT-TC-CEEEEECCCHHHHHHHHHHHHTTTCGGG-EEEECSCHHHHHHHBCSCEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHH---Hc-CC-CEEEEEECCHHHHHHHHHHHHHcCCCCc-eEEEECcHHHhHHhhcCCCCEE
Confidence 46799999999999986433 32 22 4999999999877 77777777777665 99999999884 2 34679999
Q ss_pred EeccccccCCCCCcHHHHHHHH--HhcccCcEEEec
Q psy17734 419 VSELLGSFGDNELSPECLYAAQ--KYLKEDGISIPY 452 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~--r~LkpgGi~IP~ 452 (626)
++...-.. ...++.+..+. +.|||||+++-.
T Consensus 105 ~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~ 137 (177)
T 2esr_A 105 FLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCE 137 (177)
T ss_dssp EECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred EECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEE
Confidence 99754111 12356676666 889999998754
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-09 Score=107.30 Aligned_cols=105 Identities=13% Similarity=0.040 Sum_probs=79.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA------PEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~------p~k 414 (626)
++.+|||+|||+|..+..++ +......+|+++|.++.+. .++++....++.++ |+++.+|+.+... .++
T Consensus 58 ~~~~vLdiG~G~G~~~~~la---~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~ 133 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLA---RGLSSGGRVVTLEASEKHADIARSNIERANLNDR-VEVRTGLALDSLQQIENEKYEP 133 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHH---TTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTT-EEEEESCHHHHHHHHHHTTCCC
T ss_pred CCCEEEEecCCccHHHHHHH---HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCc-EEEEEcCHHHHHHHHHhcCCCC
Confidence 45799999999999986433 3222125999999999776 77777788888877 9999999976521 157
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccce
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
||+|++... .+..+.++..+.+.|||||+++-....
T Consensus 134 fD~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 134 FDFIFIDAD-----KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp CSEEEECSC-----GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred cCEEEEcCC-----cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 999997532 223467899999999999998865443
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-09 Score=108.10 Aligned_cols=100 Identities=18% Similarity=0.237 Sum_probs=77.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++.. .++. + .+|+|+|.++.+. .+++....++.. +|+++.+|+++++.+ ++||+|+
T Consensus 21 ~~~~vLDiGcG~G~~~~~---l~~~-~--~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~fD~v~ 92 (239)
T 1xxl_A 21 AEHRVLDIGAGAGHTALA---FSPY-V--QECIGVDATKEMVEVASSFAQEKGVE--NVRFQQGTAESLPFPDDSFDIIT 92 (239)
T ss_dssp TTCEEEEESCTTSHHHHH---HGGG-S--SEEEEEESCHHHHHHHHHHHHHHTCC--SEEEEECBTTBCCSCTTCEEEEE
T ss_pred CCCEEEEEccCcCHHHHH---HHHh-C--CEEEEEECCHHHHHHHHHHHHHcCCC--CeEEEecccccCCCCCCcEEEEE
Confidence 568999999999999853 3332 3 3999999999776 666666666665 599999999998765 6899999
Q ss_pred ecc-ccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SEL-LGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEl-lgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.. +.++ .....++..+.+.|||||.++-.
T Consensus 93 ~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~~~ 123 (239)
T 1xxl_A 93 CRYAAHHF---SDVRKAVREVARVLKQDGRFLLV 123 (239)
T ss_dssp EESCGGGC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCchhhc---cCHHHHHHHHHHHcCCCcEEEEE
Confidence 863 3333 23467899999999999998753
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-09 Score=106.73 Aligned_cols=102 Identities=16% Similarity=0.069 Sum_probs=75.4
Q ss_pred CCCEEEEEcCC-CchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-C-CCCccE
Q psy17734 342 VVTTIMVVGAG-RGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-A-PEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~G-tG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-~-p~k~Di 417 (626)
++.+|||+||| +|.++..+++.. + .+|+|+|.++.++ .++++...++. + |+++.+|++.+. . +++||+
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~---~--~~v~~vD~s~~~~~~a~~~~~~~~~--~-v~~~~~d~~~~~~~~~~~fD~ 126 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFF---N--CKVTATEVDEEFFEYARRNIERNNS--N-VRLVKSNGGIIKGVVEGTFDV 126 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHH---C--CEEEEEECCHHHHHHHHHHHHHTTC--C-CEEEECSSCSSTTTCCSCEEE
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhc---C--CEEEEEECCHHHHHHHHHHHHHhCC--C-cEEEeCCchhhhhcccCceeE
Confidence 56799999999 999997554442 3 4999999999887 77777777776 4 999999976543 2 378999
Q ss_pred EEeccccccCC-----------------CCCcHHHHHHHHHhcccCcEEEe
Q psy17734 418 MVSELLGSFGD-----------------NELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 418 IVSEllgsfg~-----------------~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|++.+.-.... .+....+++.+.++|||||.++-
T Consensus 127 I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 177 (230)
T 3evz_A 127 IFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVAL 177 (230)
T ss_dssp EEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEE
Confidence 99985421100 01125678888999999998763
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.6e-09 Score=104.87 Aligned_cols=104 Identities=10% Similarity=0.048 Sum_probs=78.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CC-----C
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--AP-----E 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p-----~ 413 (626)
++.+|||+|||+|..+..++ +..+...+|+++|.++.++ .+++.....++.++ |+++.+|+.+.. .+ +
T Consensus 64 ~~~~vLdiG~G~G~~~~~la---~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~ 139 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMG---LALPKDGTLITCDVDEKSTALAKEYWEKAGLSDK-IGLRLSPAKDTLAELIHAGQAW 139 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHH---TTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTT-EEEEESCHHHHHHHHHTTTCTT
T ss_pred CCCEEEEeCCcchHHHHHHH---HhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCc-eEEEeCCHHHHHHHhhhccCCC
Confidence 35689999999999986433 3222125999999999876 77777788888877 999999997652 11 6
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+||+|++... .+..+.++..+.+.|||||+++-...
T Consensus 140 ~fD~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 140 QYDLIYIDAD-----KANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp CEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred CccEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 8999996432 23346788999999999999985443
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.2e-10 Score=108.71 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=75.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCC----CCCcEEEEEecccccCCC-CCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQW----AQSDVTIVSEDMRTWNAP-EKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~----~~~nV~vi~~D~~~~~~p-~k~ 415 (626)
++.+|||+|||+|.++..++.. + .+|+|+|.++.++ .+++.....+. .+ +++++.+|+.++..+ ++|
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~----~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~ 102 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASK----G--YSVTGIDINSEAIRLAETAARSPGLNQKTGG-KAEFKVENASSLSFHDSSF 102 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT----T--CEEEEEESCHHHHHHHHHHTTCCSCCSSSSC-EEEEEECCTTSCCSCTTCE
T ss_pred CCCeEEEECCCCCHHHHHHHhC----C--CeEEEEECCHHHHHHHHHHHHhcCCccccCc-ceEEEEecccccCCCCCce
Confidence 4679999999999998644332 3 4999999999877 55555544444 22 399999999998754 789
Q ss_pred cEEEeccc-cccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 416 DIMVSELL-GSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 416 DiIVSEll-gsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
|+|++... .++.+.+....++..+.+.|||||.++-.
T Consensus 103 D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (235)
T 3sm3_A 103 DFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLV 140 (235)
T ss_dssp EEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 99998432 22222222336889999999999998754
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.7e-09 Score=106.42 Aligned_cols=104 Identities=13% Similarity=0.193 Sum_probs=75.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--C-CCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--A-PEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~-p~k~Di 417 (626)
++.+|||||||+|.++..+++. .. ..+|+|||.++.++ .++++...+++. ||+++.+|+.++. . ++.+|.
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~---~p-~~~v~giD~s~~~l~~a~~~~~~~~~~--nv~~~~~d~~~l~~~~~~~~~d~ 111 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQ---NP-DINYIGIELFKSVIVTAVQKVKDSEAQ--NVKLLNIDADTLTDVFEPGEVKR 111 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHH---CT-TSEEEEECSCHHHHHHHHHHHHHSCCS--SEEEECCCGGGHHHHCCTTSCCE
T ss_pred CCceEEEEecCCCHHHHHHHHH---CC-CCCEEEEEechHHHHHHHHHHHHcCCC--CEEEEeCCHHHHHhhcCcCCcCE
Confidence 3568999999999998643332 21 25999999999877 777777777775 6999999999864 2 467999
Q ss_pred EEeccccccCC-----CCC-cHHHHHHHHHhcccCcEEEe
Q psy17734 418 MVSELLGSFGD-----NEL-SPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 418 IVSEllgsfg~-----~El-~pe~L~~~~r~LkpgGi~IP 451 (626)
|++.....+.. ..+ .+.++..+.+.|||||.++-
T Consensus 112 v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~ 151 (213)
T 2fca_A 112 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF 151 (213)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred EEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEE
Confidence 98743221111 011 36789999999999999874
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=6.7e-10 Score=119.60 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=74.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHH-------HHcCCC-CCcEEEEEecccccCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYK-------KEEQWA-QSDVTIVSEDMRTWNAP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~-------~~n~~~-~~nV~vi~~D~~~~~~p 412 (626)
++.+|||||||+|.++.. ++...++ .+|+|||.++.++ +|.+.. +.++.. ++ |+++++|+.+.+.+
T Consensus 173 ~gd~VLDLGCGtG~l~l~---lA~~~g~-~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~r-Vefi~GD~~~lp~~ 247 (438)
T 3uwp_A 173 DDDLFVDLGSGVGQVVLQ---VAAATNC-KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE-YTLERGDFLSEEWR 247 (438)
T ss_dssp TTCEEEEESCTTSHHHHH---HHHHCCC-SEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCE-EEEEECCTTSHHHH
T ss_pred CCCEEEEeCCCCCHHHHH---HHHHCCC-CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCC-eEEEECcccCCccc
Confidence 678999999999999853 4444554 3799999998766 555432 335553 44 99999999987653
Q ss_pred ---CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 413 ---EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 413 ---~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..+|+|+++.. .| .+.....|..+.+.|||||.+|-.
T Consensus 248 d~~~~aDVVf~Nn~-~F--~pdl~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 248 ERIANTSVIFVNNF-AF--GPEVDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp HHHHTCSEEEECCT-TC--CHHHHHHHHHHHTTSCTTCEEEES
T ss_pred cccCCccEEEEccc-cc--CchHHHHHHHHHHcCCCCcEEEEe
Confidence 47999998653 12 222355677778899999998844
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.5e-09 Score=106.95 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=73.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..+++. +. .+|+|+|.++.++ .+++... .. +++++.+|+++++.+ ++||+|+
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~----~~-~~v~~vD~s~~~~~~a~~~~~----~~-~~~~~~~d~~~~~~~~~~fD~v~ 113 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEH----GA-KKVLGIDLSERMLTEAKRKTT----SP-VVCYEQKAIEDIAIEPDAYNVVL 113 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT----TC-SEEEEEESCHHHHHHHHHHCC----CT-TEEEEECCGGGCCCCTTCEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHc----CC-CEEEEEECCHHHHHHHHHhhc----cC-CeEEEEcchhhCCCCCCCeEEEE
Confidence 5689999999999998644332 32 3999999999877 4443322 33 499999999998764 7899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+...-... +....++..+.+.|||||.++-
T Consensus 114 ~~~~l~~~--~~~~~~l~~~~~~LkpgG~l~~ 143 (253)
T 3g5l_A 114 SSLALHYI--ASFDDICKKVYINLKSSGSFIF 143 (253)
T ss_dssp EESCGGGC--SCHHHHHHHHHHHEEEEEEEEE
T ss_pred Echhhhhh--hhHHHHHHHHHHHcCCCcEEEE
Confidence 85432222 3457789999999999999874
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.99 E-value=8.1e-10 Score=109.92 Aligned_cols=103 Identities=15% Similarity=0.131 Sum_probs=73.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..+ ++..+ .+|+|+|.++.++ .+++....++ .. +++++.+|+.++..+ ++||+|+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l---~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~-~~~~~~~d~~~~~~~~~~fD~v~ 151 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRL---LLPLF--REVDMVDITEDFLVQAKTYLGEEG-KR-VRNYFCCGLQDFTPEPDSYDVIW 151 (241)
T ss_dssp CCSEEEEETCTTTHHHHHT---TTTTC--SEEEEEESCHHHHHHHHHHTGGGG-GG-EEEEEECCGGGCCCCSSCEEEEE
T ss_pred CCCEEEEECCCCCHHHHHH---HHhcC--CEEEEEeCCHHHHHHHHHHhhhcC-Cc-eEEEEEcChhhcCCCCCCEEEEE
Confidence 4679999999999998532 33222 4999999999877 5555544443 23 499999999998765 4899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+...-.....+....++..+.+.|||||.++-
T Consensus 152 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i 183 (241)
T 2ex4_A 152 IQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVI 183 (241)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 85432222222234688899999999998775
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.7e-09 Score=105.49 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=78.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc-C-CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW-N-APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~-~-~p~k~DiI 418 (626)
+..+|||+|||+|..+..++.+ .....+|++||.++.+. .++++....++.++ |+++.+|+.+. + .++ ||+|
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~---~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~-fD~v 130 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARA---ISISSRVVMIDPDRDNVEHARRMLHDNGLIDR-VELQVGDPLGIAAGQRD-IDIL 130 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTT---SCTTCEEEEEESCHHHHHHHHHHHHHHSGGGG-EEEEESCHHHHHTTCCS-EEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHHHHHHCCCCce-EEEEEecHHHHhccCCC-CCEE
Confidence 3468999999999998654332 21125999999999876 77777777787766 99999999875 2 346 9999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
++.. ..+..+.+++.+.+.|||||+++-+..
T Consensus 131 ~~~~-----~~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 131 FMDC-----DVFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp EEET-----TTSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred EEcC-----ChhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 9852 234457889999999999999986543
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.98 E-value=4.5e-09 Score=107.87 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=79.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--cCCCCCcEEEEEeccccc-C-CCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--EQWAQSDVTIVSEDMRTW-N-APEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--n~~~~~nV~vi~~D~~~~-~-~p~k~D 416 (626)
+..+|||+|||+|.++.. ++++.+. .+|++||.++.++ .+++.... +++.+.+|+++.+|.+++ . .+++||
T Consensus 75 ~~~~VLdiG~G~G~~~~~---l~~~~~~-~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD 150 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIRE---ILKHPSV-KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYD 150 (275)
T ss_dssp SCCEEEEESCTTCHHHHH---HTTCTTC-SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEE
T ss_pred CCCEEEEECCchHHHHHH---HHhCCCC-ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCee
Confidence 357899999999999854 3333232 4999999999887 66665432 345433499999999875 2 347899
Q ss_pred EEEeccccccCCCCC--cHHHHHHHHHhcccCcEEEeccc
Q psy17734 417 IMVSELLGSFGDNEL--SPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 417 iIVSEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+|+++.....+..+. ..+++..+.+.|||||+++-+..
T Consensus 151 ~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 999987654433222 36899999999999999987654
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-09 Score=110.99 Aligned_cols=105 Identities=15% Similarity=0.125 Sum_probs=68.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH-hhcCCccEE--EEEeCCHHHH-HHHHHHHHc-CCCCCcEEE--EEecccccC----
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAA-KEANRKVRV--YAVEKNMSAV-VGLKYKKEE-QWAQSDVTI--VSEDMRTWN---- 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa-~~~g~~~~V--~AVE~np~a~-~a~~~~~~n-~~~~~nV~v--i~~D~~~~~---- 410 (626)
++.+|||||||+|.++..++... ++. ...+| +|||.|+.++ .+++..... +.. ++++ ..++..++.
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~-~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~ 128 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQY-PGVCINNEVVEPSAEQIAKYKELVAKTSNLE--NVKFAWHKETSSEYQSRML 128 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHS-TTCEEEEEEECSCHHHHHHHHHHHHTCSSCT--TEEEEEECSCHHHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhC-CCceeeEEEEeCCHHHHHHHHHHHHhccCCC--cceEEEEecchhhhhhhhc
Confidence 45799999999998765433322 221 12444 9999999887 555544332 333 3544 566665543
Q ss_pred ---CCCCccEEEecc-ccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 411 ---APEKADIMVSEL-LGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 411 ---~p~k~DiIVSEl-lgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+++||+|++-. +.++ +.....|..+.+.|||||.++-.
T Consensus 129 ~~~~~~~fD~V~~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 129 EKKELQKWDFIHMIQMLYYV---KDIPATLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp TTTCCCCEEEEEEESCGGGC---SCHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccCCCceeEEEEeeeeeec---CCHHHHHHHHHHHcCCCcEEEEE
Confidence 247899999843 3333 22466899999999999987743
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.5e-09 Score=104.79 Aligned_cols=98 Identities=13% Similarity=0.066 Sum_probs=72.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSE 421 (626)
+.+|||+|||+|.++..++.. + .+|+|+|.++.++...+.. . . +++++.+|+.+++.+ ++||+|++.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~----~--~~v~gvD~s~~~~~~a~~~----~-~-~~~~~~~d~~~~~~~~~~fD~v~~~ 109 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL----G--HQIEGLEPATRLVELARQT----H-P-SVTFHHGTITDLSDSPKRWAGLLAW 109 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT----T--CCEEEECCCHHHHHHHHHH----C-T-TSEEECCCGGGGGGSCCCEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhc----C--CeEEEEeCCHHHHHHHHHh----C-C-CCeEEeCcccccccCCCCeEEEEeh
Confidence 468999999999998654332 3 4999999999877333221 1 2 499999999998754 789999985
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..-.....+....++..+.+.|||||.++-.
T Consensus 110 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 140 (203)
T 3h2b_A 110 YSLIHMGPGELPDALVALRMAVEDGGGLLMS 140 (203)
T ss_dssp SSSTTCCTTTHHHHHHHHHHTEEEEEEEEEE
T ss_pred hhHhcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 4333333345577899999999999987743
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.8e-09 Score=108.00 Aligned_cols=103 Identities=11% Similarity=0.122 Sum_probs=78.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..++.... + .+|+++|.++.++ .+++....++.. +++++.+|+.++..+ ++||+|+
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~--~--~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~ 110 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNNP--D--AEITSIDISPESLEKARENTEKNGIK--NVKFLQANIFSLPFEDSSFDHIF 110 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCT--T--SEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEECCGGGCCSCTTCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHhCC--C--CEEEEEECCHHHHHHHHHHHHHcCCC--CcEEEEcccccCCCCCCCeeEEE
Confidence 568999999999999865443321 2 5999999999877 666666667765 599999999998754 7899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+..+-... .....++..+.+.|||||.++-.
T Consensus 111 ~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~ 141 (276)
T 3mgg_A 111 VCFVLEHL--QSPEEALKSLKKVLKPGGTITVI 141 (276)
T ss_dssp EESCGGGC--SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred Eechhhhc--CCHHHHHHHHHHHcCCCcEEEEE
Confidence 85432222 22357899999999999987643
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-09 Score=104.42 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=74.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++...+ +..+ .+|+|+|.++.++ .+++....++ . +++++.+|+++++.+ ++||+|+
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~---~~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~-~~~~~~~d~~~~~~~~~~fD~v~ 94 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIF---VEDG--YKTYGIEISDLQLKKAENFSRENN--F-KLNISKGDIRKLPFKDESMSFVY 94 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHH---HHTT--CEEEEEECCHHHHHHHHHHHHHHT--C-CCCEEECCTTSCCSCTTCEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHH---HhCC--CEEEEEECCHHHHHHHHHHHHhcC--C-ceEEEECchhhCCCCCCceeEEE
Confidence 45799999999998753222 2234 4999999999877 5555555554 2 499999999998764 6899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+...-+....+....++..+.+.|||||.++-.
T Consensus 95 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 127 (209)
T 2p8j_A 95 SYGTIFHMRKNDVKEAIDEIKRVLKPGGLACIN 127 (209)
T ss_dssp ECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 843222221122456888899999999998754
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.7e-09 Score=108.83 Aligned_cols=104 Identities=16% Similarity=0.114 Sum_probs=79.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc-C-C--CCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW-N-A--PEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~-~-~--p~k~D 416 (626)
++.+|||+|||+|..+..++ +..+...+|++||.++.++ .++++....++.++ |+++.+|+.+. . . .++||
T Consensus 63 ~~~~VLdiG~G~G~~~~~la---~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~-v~~~~~d~~~~l~~~~~~~~fD 138 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMA---RELPADGQLLTLEADAHHAQVARENLQLAGVDQR-VTLREGPALQSLESLGECPAFD 138 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHH---TTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTT-EEEEESCHHHHHHTCCSCCCCS
T ss_pred CCCEEEEecCCchHHHHHHH---HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCc-EEEEEcCHHHHHHhcCCCCCeE
Confidence 45799999999999986433 3222125999999999776 77788888888777 99999999874 2 2 24899
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+|++.. ..+..+.+++.+.+.|||||+++-...
T Consensus 139 ~V~~d~-----~~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 139 LIFIDA-----DKPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp EEEECS-----CGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred EEEECC-----chHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 999843 223346789999999999999886544
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-09 Score=108.90 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=73.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC----CCCC
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN----APEK 414 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~----~p~k 414 (626)
..++.+|||+|||+|.++..++ +..|.+.+|||||.++.+. .+++.. .... ||+.+.+|.++.. ..+.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la---~~VG~~G~V~avD~s~~~~~~l~~~a--~~~~--ni~~V~~d~~~p~~~~~~~~~ 147 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMS---DIIGPRGRIYGVEFAPRVMRDLLTVV--RDRR--NIFPILGDARFPEKYRHLVEG 147 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHH---HHHCTTCEEEEEECCHHHHHHHHHHS--TTCT--TEEEEESCTTCGGGGTTTCCC
T ss_pred CCCCCEEEEecCcCCHHHHHHH---HHhCCCceEEEEeCCHHHHHHHHHhh--Hhhc--CeeEEEEeccCccccccccce
Confidence 3478999999999999996544 4445556999999999877 343332 2223 6999999988754 2378
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+|+|++++. ..+....++..+.++|||||.++-
T Consensus 148 vDvVf~d~~----~~~~~~~~l~~~~r~LKpGG~lvI 180 (233)
T 4df3_A 148 VDGLYADVA----QPEQAAIVVRNARFFLRDGGYMLM 180 (233)
T ss_dssp EEEEEECCC----CTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEEecc----CChhHHHHHHHHHHhccCCCEEEE
Confidence 999987543 223345678899999999998763
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.7e-09 Score=106.91 Aligned_cols=99 Identities=22% Similarity=0.187 Sum_probs=78.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++++ .+...+|+++|.++.+. .++++.+.+++.++ |+++.+|+.+.-..+++|+|++
T Consensus 93 ~~~~vldiG~G~G~~~~~l~~~---~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~D~v~~ 168 (255)
T 3mb5_A 93 PGDFIVEAGVGSGALTLFLANI---VGPEGRVVSYEIREDFAKLAWENIKWAGFDDR-VTIKLKDIYEGIEEENVDHVIL 168 (255)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH---HCTTSEEEEECSCHHHHHHHHHHHHHHTCTTT-EEEECSCGGGCCCCCSEEEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHH---hCCCeEEEEEecCHHHHHHHHHHHHHcCCCCc-eEEEECchhhccCCCCcCEEEE
Confidence 5679999999999998755444 12125999999999776 77778788888876 9999999998755578999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
.+. ...+++..+.+.|||||.++-
T Consensus 169 ~~~-------~~~~~l~~~~~~L~~gG~l~~ 192 (255)
T 3mb5_A 169 DLP-------QPERVVEHAAKALKPGGFFVA 192 (255)
T ss_dssp CSS-------CGGGGHHHHHHHEEEEEEEEE
T ss_pred CCC-------CHHHHHHHHHHHcCCCCEEEE
Confidence 542 224578889999999998774
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-09 Score=104.62 Aligned_cols=97 Identities=22% Similarity=0.225 Sum_probs=74.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..+ ++ .+. .+|+|+|.++.++ .++++...++.. +++++.+|+.+.. +++||+|++
T Consensus 60 ~~~~vLDiG~G~G~~~~~l---~~-~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~-~~~fD~i~~ 131 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAA---HK-LGA-KSVLATDISDESMTAAEENAALNGIY--DIALQKTSLLADV-DGKFDLIVA 131 (205)
T ss_dssp SCCEEEEETCTTSHHHHHH---HH-TTC-SEEEEEESCHHHHHHHHHHHHHTTCC--CCEEEESSTTTTC-CSCEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHH---HH-CCC-CEEEEEECCHHHHHHHHHHHHHcCCC--ceEEEeccccccC-CCCceEEEE
Confidence 4679999999999998643 23 232 4999999999876 777777777775 4999999998864 489999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
...- +....++..+.+.|||||.++-
T Consensus 132 ~~~~-----~~~~~~l~~~~~~L~~gG~l~~ 157 (205)
T 3grz_A 132 NILA-----EILLDLIPQLDSHLNEDGQVIF 157 (205)
T ss_dssp ESCH-----HHHHHHGGGSGGGEEEEEEEEE
T ss_pred CCcH-----HHHHHHHHHHHHhcCCCCEEEE
Confidence 6532 1235667778889999999875
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=5e-09 Score=109.61 Aligned_cols=138 Identities=14% Similarity=0.150 Sum_probs=92.9
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHH---hhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-
Q psy17734 308 TYEVFEKDPIKYIRYQEAVQQAL---LDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV- 383 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI~~al---~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~- 383 (626)
.|+.+.+|+.....|.+++.... ...+.+..+..+..+|||||||+|.++..++++.. + .+++++|. |.++
T Consensus 132 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p--~--~~~~~~D~-~~~~~ 206 (332)
T 3i53_A 132 FWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYDWAALGHVVDVGGGSGGLLSALLTAHE--D--LSGTVLDL-QGPAS 206 (332)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSSCCGGGSEEEEETCTTSHHHHHHHHHCT--T--CEEEEEEC-HHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHHhCCCCCCCEEEEeCCChhHHHHHHHHHCC--C--CeEEEecC-HHHHH
Confidence 56667777777777776665432 11111111122457999999999999865444322 2 58999999 8666
Q ss_pred HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 384 VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 384 ~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+++.....++.++ |+++.+|+.+ +.|.++|+|++-..-+....+....+|..+.+.|||||.++-.
T Consensus 207 ~a~~~~~~~~~~~~-v~~~~~d~~~-~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~ 273 (332)
T 3i53_A 207 AAHRRFLDTGLSGR-AQVVVGSFFD-PLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVI 273 (332)
T ss_dssp HHHHHHHHTTCTTT-EEEEECCTTS-CCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHhhhhcCcCcC-eEEecCCCCC-CCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 67777777788777 9999999973 3445899998844322222222456889999999999987643
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-09 Score=116.64 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=79.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..+++. + .+|++||.|+.++ .++++...++. +++++.+|+.+...+ ++||+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~----g--~~V~gvDis~~al~~A~~n~~~~~~---~v~~~~~D~~~~~~~~~~fD~Ii 303 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM----G--AEVVGVEDDLASVLSLQKGLEANAL---KAQALHSDVDEALTEEARFDIIV 303 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT----T--CEEEEEESBHHHHHHHHHHHHHTTC---CCEEEECSTTTTSCTTCCEEEEE
T ss_pred CCCEEEEEeeeCCHHHHHHHHc----C--CEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEcchhhccccCCCeEEEE
Confidence 5679999999999999644332 3 4999999999887 77777777776 399999999998665 7999999
Q ss_pred eccccccCCCCC---cHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNEL---SPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El---~pe~L~~~~r~LkpgGi~IP 451 (626)
+...-+.+.... ..+++..+.+.|||||+++-
T Consensus 304 ~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~i 338 (381)
T 3dmg_A 304 TNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL 338 (381)
T ss_dssp ECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEE
Confidence 987544332222 35688889999999999774
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-09 Score=108.30 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=74.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIM 418 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiI 418 (626)
.++.+|||+|||+|.++..++... + .+|+|+|.++.++ .+++..... . +|+++.+|+.+++.+ ++||+|
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~---~--~~v~~vD~s~~~~~~a~~~~~~~---~-~~~~~~~d~~~~~~~~~~fD~v 124 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKY---G--AHTHGIDICSNIVNMANERVSGN---N-KIIFEANDILTKEFPENNFDLI 124 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH---C--CEEEEEESCHHHHHHHHHTCCSC---T-TEEEEECCTTTCCCCTTCEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHHc---C--CEEEEEeCCHHHHHHHHHHhhcC---C-CeEEEECccccCCCCCCcEEEE
Confidence 356799999999999986544432 3 4999999999877 444332212 3 499999999998764 789999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
++..+-.....+....++..+.+.|||||.++-..
T Consensus 125 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 125 YSRDAILALSLENKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 98432222111234668899999999999988553
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.7e-09 Score=105.79 Aligned_cols=99 Identities=21% Similarity=0.247 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccc----cCCCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRT----WNAPEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~----~~~p~k~D 416 (626)
++.+|||+|||+|.++..++.. .+ ..+|+|||.++.++ .+.++...+ . ||+++.+|+++ ...+++||
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~---~~-~~~v~gvD~s~~~~~~a~~~~~~~---~-~v~~~~~d~~~~~~~~~~~~~~D 145 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADI---AD-KGIVYAIEYAPRIMRELLDACAER---E-NIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHH---TT-TSEEEEEESCHHHHHHHHHHTTTC---T-TEEEEECCTTCGGGGTTTSCCEE
T ss_pred CCCEEEEEcccCCHHHHHHHHH---cC-CcEEEEEECCHHHHHHHHHHhhcC---C-CeEEEECCCCCcccccccCccEE
Confidence 5679999999999998654433 33 24999999999887 444443322 3 59999999998 55557899
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+|+.++ ...+....++..+.+.|||||.++-.
T Consensus 146 ~v~~~~----~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 146 VIYEDV----AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEEECC----CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEec----CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 999543 11222356789999999999987753
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.8e-09 Score=106.58 Aligned_cols=95 Identities=15% Similarity=0.162 Sum_probs=70.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||||||+|.++.. .++ .+ .+|+|+|.++.++ .+++.. ... |+++.+|++++..+++||+|++
T Consensus 42 ~~~~vLDiGcG~G~~~~~---l~~-~~--~~v~gvD~s~~~~~~a~~~~-----~~~-v~~~~~d~~~~~~~~~fD~v~~ 109 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSR---LQE-HF--NDITCVEASEEAISHAQGRL-----KDG-ITYIHSRFEDAQLPRRYDNIVL 109 (250)
T ss_dssp CSSCEEEESCTTSHHHHH---HTT-TC--SCEEEEESCHHHHHHHHHHS-----CSC-EEEEESCGGGCCCSSCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHH---HHH-hC--CcEEEEeCCHHHHHHHHHhh-----hCC-eEEEEccHHHcCcCCcccEEEE
Confidence 456799999999999853 333 23 3899999999877 443332 114 9999999999865688999998
Q ss_pred cc-ccccCCCCCcHHHHHHHH-HhcccCcEEEe
Q psy17734 421 EL-LGSFGDNELSPECLYAAQ-KYLKEDGISIP 451 (626)
Q Consensus 421 El-lgsfg~~El~pe~L~~~~-r~LkpgGi~IP 451 (626)
.. +.++ .....+|..+. +.|||||.++-
T Consensus 110 ~~~l~~~---~~~~~~l~~~~~~~LkpgG~l~i 139 (250)
T 2p7i_A 110 THVLEHI---DDPVALLKRINDDWLAEGGRLFL 139 (250)
T ss_dssp ESCGGGC---SSHHHHHHHHHHTTEEEEEEEEE
T ss_pred hhHHHhh---cCHHHHHHHHHHHhcCCCCEEEE
Confidence 44 3322 12367899999 99999998774
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.2e-10 Score=109.28 Aligned_cols=100 Identities=11% Similarity=0.044 Sum_probs=70.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
+..+|||+|||+|+++...+..+ ...+|+|+|.|+.++ +++++...+|..++ +++ .|..+-..+++||+|++
T Consensus 49 ~~~~VLDlGCG~GplAl~l~~~~----p~a~~~A~Di~~~~leiar~~~~~~g~~~~-v~~--~d~~~~~~~~~~DvVLa 121 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQWNEN----EKIIYHAYDIDRAEIAFLSSIIGKLKTTIK-YRF--LNKESDVYKGTYDVVFL 121 (200)
T ss_dssp CCSEEEEETCTTHHHHHHHHCSS----CCCEEEEECSCHHHHHHHHHHHHHSCCSSE-EEE--ECCHHHHTTSEEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHhcC----CCCEEEEEeCCHHHHHHHHHHHHhcCCCcc-EEE--ecccccCCCCCcChhhH
Confidence 35699999999999996432222 125999999999877 88888888888654 777 56555556688999988
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
--+-+.+. + .+..+..+.+.|||||++|
T Consensus 122 ~k~LHlL~-~-~~~al~~v~~~L~pggvfI 149 (200)
T 3fzg_A 122 LKMLPVLK-Q-QDVNILDFLQLFHTQNFVI 149 (200)
T ss_dssp ETCHHHHH-H-TTCCHHHHHHTCEEEEEEE
T ss_pred hhHHHhhh-h-hHHHHHHHHHHhCCCCEEE
Confidence 44333321 1 1123446778899999876
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-09 Score=107.65 Aligned_cols=100 Identities=19% Similarity=0.202 Sum_probs=73.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..++ +. + .+|+|+|.++.++ .+++.. . +... +++++.+|++++..+ ++||+|+
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~---~~-~--~~v~~vD~s~~~~~~a~~~~-~-~~~~-~~~~~~~d~~~~~~~~~~fD~v~ 109 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLI---AR-G--YRYIALDADAAMLEVFRQKI-A-GVDR-KVQVVQADARAIPLPDESVHGVI 109 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHH---TT-T--CEEEEEESCHHHHHHHHHHT-T-TSCT-TEEEEESCTTSCCSCTTCEEEEE
T ss_pred CCCEEEEeCCcCCHHHHHHH---HC-C--CEEEEEECCHHHHHHHHHHh-h-ccCC-ceEEEEcccccCCCCCCCeeEEE
Confidence 56799999999999986433 32 3 4999999999877 444443 2 2223 499999999998754 6899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+...-.+. ...+.++..+.+.|||||.++-.
T Consensus 110 ~~~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 110 VVHLWHLV--PDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp EESCGGGC--TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCchhhc--CCHHHHHHHHHHHCCCCcEEEEE
Confidence 85432221 12467899999999999998754
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.94 E-value=9.9e-10 Score=106.80 Aligned_cols=97 Identities=15% Similarity=0.083 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++.. + .+|+|+|.++.++ .+++.. +++++.+|+.++..+++||+|++
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~----~--~~v~~vD~s~~~~~~a~~~~--------~~~~~~~d~~~~~~~~~fD~v~~ 108 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAA----G--FDVDATDGSPELAAEASRRL--------GRPVRTMLFHQLDAIDAYDAVWA 108 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHT----T--CEEEEEESCHHHHHHHHHHH--------TSCCEECCGGGCCCCSCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHc----C--CeEEEECCCHHHHHHHHHhc--------CCceEEeeeccCCCCCcEEEEEe
Confidence 4679999999999998644332 3 4999999999877 444432 27888999999887789999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
...-.....+....++..+.+.|||||.++-.
T Consensus 109 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 140 (211)
T 3e23_A 109 HACLLHVPRDELADVLKLIWRALKPGGLFYAS 140 (211)
T ss_dssp CSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 54322222223356889999999999998753
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.4e-09 Score=105.07 Aligned_cols=99 Identities=18% Similarity=0.227 Sum_probs=71.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC----CCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN----APEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~----~p~k~D 416 (626)
++.+|||+|||+|.++..+++.. |...+|+|||.++.++ .+++..+.+ . ||+++.+|+++.. .+++||
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~---g~~~~v~gvD~s~~~i~~~~~~a~~~---~-~v~~~~~d~~~~~~~~~~~~~~D 149 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIV---GPDGLVYAVEFSHRSGRDLINLAKKR---T-NIIPVIEDARHPHKYRMLIAMVD 149 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHH---CTTCEEEEECCCHHHHHHHHHHHHHC---T-TEEEECSCTTCGGGGGGGCCCEE
T ss_pred CCCEEEEEcccCCHHHHHHHHHh---CCCcEEEEEECCHHHHHHHHHHhhcc---C-CeEEEEcccCChhhhcccCCcEE
Confidence 56799999999999997554432 2224999999999875 344444443 3 5999999999843 246899
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+|++... ..+....++..+.+.|||||+++-
T Consensus 150 ~V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i 180 (233)
T 2ipx_A 150 VIFADVA----QPDQTRIVALNAHTFLRNGGHFVI 180 (233)
T ss_dssp EEEECCC----CTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEcCC----CccHHHHHHHHHHHHcCCCeEEEE
Confidence 9999654 122223457778999999998775
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-09 Score=113.09 Aligned_cols=105 Identities=11% Similarity=0.084 Sum_probs=72.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCC--------------------------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQW-------------------------- 394 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~-------------------------- 394 (626)
++.+|||||||+|.++..++ +..+. .+|+|||.++.++ .+++.+...+.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la---~~~~~-~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIA---CKWGP-SRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVR 121 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHH---HHTCC-SEEEEEESCHHHHHHHHHTC-------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHH---HHcCC-CEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 56899999999999986433 33332 4999999999877 55554433221
Q ss_pred -------------------------------CCCcEEEEEecccccC------CCCCccEEEecccc-ccC---CCCCcH
Q psy17734 395 -------------------------------AQSDVTIVSEDMRTWN------APEKADIMVSELLG-SFG---DNELSP 433 (626)
Q Consensus 395 -------------------------------~~~nV~vi~~D~~~~~------~p~k~DiIVSEllg-sfg---~~El~p 433 (626)
.+ ||+++++|+.+.. ..++||+|++-.+- ++. ..+...
T Consensus 122 ~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~-~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~ 200 (292)
T 3g07_A 122 KRSCFPASLTASRGPIAAPQVPLDGADTSVFPN-NVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLK 200 (292)
T ss_dssp --------------------CCSSTTCCSSTTT-TEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHH
T ss_pred ccccccchhhhccCccccccccccccccccccc-cceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHH
Confidence 13 4999999998654 34789999984432 221 122345
Q ss_pred HHHHHHHHhcccCcEEEe
Q psy17734 434 ECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 434 e~L~~~~r~LkpgGi~IP 451 (626)
.++..+.+.|||||.+|-
T Consensus 201 ~~l~~~~~~LkpGG~lil 218 (292)
T 3g07_A 201 RMFRRIYRHLRPGGILVL 218 (292)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHhCCCcEEEE
Confidence 688899999999999874
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=5.1e-09 Score=99.01 Aligned_cols=99 Identities=23% Similarity=0.192 Sum_probs=75.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccc-cCCCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRT-WNAPEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~-~~~p~k~DiIV 419 (626)
++.+|||+|||+|.++..+ ++. + .+|+++|.++.+. .++++...++..++ ++++.+|+.+ +....++|+|+
T Consensus 33 ~~~~vldiG~G~G~~~~~l---~~~-~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~D~v~ 105 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLEL---AGR-V--RRVYAIDRNPEAISTTEMNLQRHGLGDN-VTLMEGDAPEALCKIPDIDIAV 105 (192)
T ss_dssp TTCEEEEESCTTSHHHHHH---HTT-S--SEEEEEESCHHHHHHHHHHHHHTTCCTT-EEEEESCHHHHHTTSCCEEEEE
T ss_pred CCCEEEEECCCCCHHHHHH---HHh-c--CEEEEEECCHHHHHHHHHHHHHcCCCcc-eEEEecCHHHhcccCCCCCEEE
Confidence 5679999999999998543 332 2 4999999999877 66777777777555 9999999987 33225899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+... .+...+++..+.+.|+|||.++-.
T Consensus 106 ~~~~-----~~~~~~~l~~~~~~l~~gG~l~~~ 133 (192)
T 1l3i_A 106 VGGS-----GGELQEILRIIKDKLKPGGRIIVT 133 (192)
T ss_dssp ESCC-----TTCHHHHHHHHHHTEEEEEEEEEE
T ss_pred ECCc-----hHHHHHHHHHHHHhcCCCcEEEEE
Confidence 8532 134578899999999999988753
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.7e-09 Score=105.01 Aligned_cols=104 Identities=13% Similarity=0.046 Sum_probs=78.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CC-----C
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--AP-----E 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p-----~ 413 (626)
++.+|||+|||+|.++..++++ .+...+|+++|.++.+. .+++....++..++ |+++.+|+.+.. .+ +
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~---~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~-i~~~~~d~~~~~~~~~~~~~~~ 144 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALA---LPADGRVVTCEVDAQPPELGRPLWRQAEAEHK-IDLRLKPALETLDELLAAGEAG 144 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTT---SCTTCEEEEEESCSHHHHHHHHHHHHTTCTTT-EEEEESCHHHHHHHHHHTTCTT
T ss_pred CCCEEEEEcCCccHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHHHHHHCCCCCe-EEEEEcCHHHHHHHHHhcCCCC
Confidence 4579999999999998654332 22125999999999776 77777777888666 999999987651 11 6
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+||+|++... .+....++..+.+.|||||+++-...
T Consensus 145 ~~D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 145 TFDVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp CEEEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred CccEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 8999998542 33346788999999999999887543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-09 Score=104.37 Aligned_cols=99 Identities=16% Similarity=0.170 Sum_probs=73.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++ +|||+|||+|.++..++ + .+ .+|+|+|.++.++ .+++....++. +++++.+|+.++..+ ++||+|+
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~---~-~~--~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~~fD~v~ 99 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLA---S-LG--YEVTAVDQSSVGLAKAKQLAQEKGV---KITTVQSNLADFDIVADAWEGIV 99 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHH---T-TT--CEEEEECSSHHHHHHHHHHHHHHTC---CEEEECCBTTTBSCCTTTCSEEE
T ss_pred CC-CEEEECCCCCHhHHHHH---h-CC--CeEEEEECCHHHHHHHHHHHHhcCC---ceEEEEcChhhcCCCcCCccEEE
Confidence 34 99999999999985433 2 24 4999999999877 66666555554 499999999998754 6899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.. ..+ ..+....++..+.+.|||||.++-.
T Consensus 100 ~~~-~~~-~~~~~~~~l~~~~~~L~pgG~l~~~ 130 (202)
T 2kw5_A 100 SIF-CHL-PSSLRQQLYPKVYQGLKPGGVFILE 130 (202)
T ss_dssp EEC-CCC-CHHHHHHHHHHHHTTCCSSEEEEEE
T ss_pred EEh-hcC-CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 842 111 1122356788899999999998754
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=98.93 E-value=4.3e-09 Score=112.82 Aligned_cols=106 Identities=17% Similarity=0.200 Sum_probs=77.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc-----C-CCCCcEEEEEeccccc-----
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE-----Q-WAQSDVTIVSEDMRTW----- 409 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n-----~-~~~~nV~vi~~D~~~~----- 409 (626)
++.+|||+|||+|.++..++... +...+|+|+|.++.++ .++++...+ | ....+|+++.+|++++
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~ 159 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLV---GEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP 159 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHH---TTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBS
T ss_pred CCCEEEEecCccCHHHHHHHHHh---CCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhccc
Confidence 56899999999999986544433 2225999999999877 555554433 3 3222599999999987
Q ss_pred -CCC-CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 410 -NAP-EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 410 -~~p-~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..+ ++||+|++..+-... .....++..+.+.|||||.++-.
T Consensus 160 ~~~~~~~fD~V~~~~~l~~~--~d~~~~l~~~~r~LkpgG~l~i~ 202 (383)
T 4fsd_A 160 EGVPDSSVDIVISNCVCNLS--TNKLALFKEIHRVLRDGGELYFS 202 (383)
T ss_dssp CCCCTTCEEEEEEESCGGGC--SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCCCEEEEEEccchhcC--CCHHHHHHHHHHHcCCCCEEEEE
Confidence 444 689999996543332 22467899999999999998754
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.93 E-value=6.2e-09 Score=102.54 Aligned_cols=99 Identities=12% Similarity=0.197 Sum_probs=71.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC----CCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN----APEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~----~p~k~D 416 (626)
++.+|||+|||+|.++..++... |...+|+|+|.++.++ .+.++.+.+ . ||+++.+|+++.. .+++||
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~---~~~~~v~~vD~s~~~~~~~~~~~~~~---~-~v~~~~~d~~~~~~~~~~~~~~D 145 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIV---GWEGKIFGIEFSPRVLRELVPIVEER---R-NIVPILGDATKPEEYRALVPKVD 145 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHH---CTTSEEEEEESCHHHHHHHHHHHSSC---T-TEEEEECCTTCGGGGTTTCCCEE
T ss_pred CCCEEEEEeccCCHHHHHHHHHh---CCCeEEEEEECCHHHHHHHHHHHhcc---C-CCEEEEccCCCcchhhcccCCce
Confidence 56799999999999997554432 2224999999999877 444443222 3 5999999998842 346899
Q ss_pred EEEeccccccCCCCCcH-HHHHHHHHhcccCcEEEec
Q psy17734 417 IMVSELLGSFGDNELSP-ECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 417 iIVSEllgsfg~~El~p-e~L~~~~r~LkpgGi~IP~ 452 (626)
+|++... ..... .++..+.+.|||||.++-.
T Consensus 146 ~v~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 146 VIFEDVA-----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EEEECCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCC-----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 9998654 12223 3488899999999987643
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=4.8e-09 Score=108.77 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--cCCCCCcEEEEEecccccC--CCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--EQWAQSDVTIVSEDMRTWN--APEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--n~~~~~nV~vi~~D~~~~~--~p~k~D 416 (626)
++.+|||+|||+|.++..+ ++..+. .+|++||.++.++ .++++... +++.+.+|+++.+|+.++. .+++||
T Consensus 90 ~~~~VLdiG~G~G~~~~~l---~~~~~~-~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 165 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREV---LKHDSV-EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFD 165 (296)
T ss_dssp SCCEEEEEECTTCHHHHHH---TTSTTC-SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEE
T ss_pred CCCEEEEEcCCcCHHHHHH---HhcCCC-CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCce
Confidence 3478999999999998643 333222 5999999999877 66665533 3442224999999988752 247899
Q ss_pred EEEeccccc-cCCCCC--cHHHHHHHHHhcccCcEEEeccc
Q psy17734 417 IMVSELLGS-FGDNEL--SPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 417 iIVSEllgs-fg~~El--~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+|+++.... .+..+. ..+++..+.+.|||||+++-+..
T Consensus 166 ~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 166 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 999976543 322222 36889999999999999987643
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.6e-09 Score=109.27 Aligned_cols=117 Identities=18% Similarity=0.047 Sum_probs=83.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-----CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-----PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-----p~k~ 415 (626)
++.+|||+|||+|..+..++.... + ..+|+|+|.++.++ .++++.+.++.. ||+++++|++++.. .++|
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~--~-~~~v~avD~~~~~l~~~~~~~~~~g~~--~v~~~~~D~~~~~~~~~~~~~~f 157 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMK--N-KGTIVAVEISKTRTKALKSNINRMGVL--NTIIINADMRKYKDYLLKNEIFF 157 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTT--T-CSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEESCHHHHHHHHHHTTCCE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcC--C-CCEEEEECCCHHHHHHHHHHHHHhCCC--cEEEEeCChHhcchhhhhccccC
Confidence 567999999999999865443322 2 24999999999876 677777777775 59999999988753 5789
Q ss_pred cEEEecccccc-CC-C--------------CCcHHHHHHHHHhcccCcEEEeccceeeEEeccChH
Q psy17734 416 DIMVSELLGSF-GD-N--------------ELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHK 465 (626)
Q Consensus 416 DiIVSEllgsf-g~-~--------------El~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~ 465 (626)
|+|++...-+. +. . +...++++.+.++|||||.++-..++. .|-+...
T Consensus 158 D~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~--~~~ene~ 221 (274)
T 3ajd_A 158 DKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM--EVEENEE 221 (274)
T ss_dssp EEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC--CTTSSHH
T ss_pred CEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC--ChHHhHH
Confidence 99999754221 10 0 233678899999999999998665543 3444443
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.92 E-value=7.3e-09 Score=103.91 Aligned_cols=101 Identities=18% Similarity=0.227 Sum_probs=69.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC----CCCCcc
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN----APEKAD 416 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~----~p~k~D 416 (626)
.++.+|||+|||+|.++..++... +.+.+|+|+|.++.+...+....+.. . ||+++.+|++... ..++||
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v---~~~G~V~avD~s~~~l~~l~~~a~~r-~--nv~~i~~Da~~~~~~~~~~~~~D 148 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDII---ELNGKAYGVEFSPRVVRELLLVAQRR-P--NIFPLLADARFPQSYKSVVENVD 148 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH---TTTSEEEEEECCHHHHHHHHHHHHHC-T--TEEEEECCTTCGGGTTTTCCCEE
T ss_pred CCCCEEEEEeecCCHHHHHHHHHh---CCCCEEEEEECcHHHHHHHHHHhhhc-C--CeEEEEcccccchhhhccccceE
Confidence 467899999999999986544433 33359999999997752222222222 2 6999999998743 246899
Q ss_pred EEEeccccccCCCCCcHHHH-HHHHHhcccCcEEEec
Q psy17734 417 IMVSELLGSFGDNELSPECL-YAAQKYLKEDGISIPY 452 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L-~~~~r~LkpgGi~IP~ 452 (626)
+|+++... ....+.+ ..+.++|||||.++-.
T Consensus 149 ~I~~d~a~-----~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 149 VLYVDIAQ-----PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp EEEECCCC-----TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEecCCC-----hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 99997531 2234444 4556699999998744
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-09 Score=113.57 Aligned_cols=102 Identities=16% Similarity=0.168 Sum_probs=77.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-----CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-----PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-----p~k~ 415 (626)
++.+|||+|||+|.++..++ + .| .+|+|||.|+.++ .++++...+++.+++++++++|+.++.. .++|
T Consensus 153 ~~~~VLDlgcGtG~~sl~la---~-~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~f 226 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAA---A-AG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTY 226 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHH---H-TT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCB
T ss_pred CCCcEEEcccccCHHHHHHH---H-cC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCc
Confidence 45799999999999986433 3 34 3999999999887 7788888888875239999999988642 4689
Q ss_pred cEEEeccccccCCC---C------CcHHHHHHHHHhcccCcEEE
Q psy17734 416 DIMVSELLGSFGDN---E------LSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 416 DiIVSEllgsfg~~---E------l~pe~L~~~~r~LkpgGi~I 450 (626)
|+||+++.- |+.. + ...+++..+.+.|||||+++
T Consensus 227 D~Ii~dPP~-~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~ll 269 (332)
T 2igt_A 227 DIILTDPPK-FGRGTHGEVWQLFDHLPLMLDICREILSPKALGL 269 (332)
T ss_dssp SEEEECCCS-EEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEE
T ss_pred eEEEECCcc-ccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEE
Confidence 999998752 2211 1 12467888889999999844
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.1e-09 Score=111.93 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=77.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIMV 419 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiIV 419 (626)
+.+|||||||+|.++..+++... ..+++++|. +.++ .+++.....++.++ |+++.+|+.+.. .++.||+|+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~D~v~ 253 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHP----QLTGQIWDL-PTTRDAARKTIHAHDLGGR-VEFFEKNLLDARNFEGGAADVVM 253 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCT----TCEEEEEEC-GGGHHHHHHHHHHTTCGGG-EEEEECCTTCGGGGTTCCEEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCC----CCeEEEEEC-HHHHHHHHHHHHhcCCCCc-eEEEeCCcccCcccCCCCccEEE
Confidence 67999999999999865444321 259999999 5444 77777777788776 999999999887 677899998
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+-..-+....+....+|..+.+.|||||.++-.
T Consensus 254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~ 286 (352)
T 3mcz_A 254 LNDCLHYFDAREAREVIGHAAGLVKPGGALLIL 286 (352)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EecccccCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 844322222222356888899999999987643
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.6e-09 Score=107.78 Aligned_cols=104 Identities=15% Similarity=0.103 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc-C-C------C
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW-N-A------P 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~-~-~------p 412 (626)
+..+|||+|||+|..+..++++... + .+|++||.++.+. .++++....++.++ |+++.+|+.+. + . .
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~-~--~~v~~iD~s~~~~~~a~~~~~~~g~~~~-i~~~~gda~~~l~~l~~~~~~~ 154 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPE-D--GKILAMDINKENYELGLPVIKKAGVDHK-IDFREGPALPVLDEMIKDEKNH 154 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCT-T--CEEEEEESCCHHHHHHHHHHHHTTCGGG-EEEEESCHHHHHHHHHHSGGGT
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCC-C--CEEEEEECCHHHHHHHHHHHHHcCCCCC-eEEEECCHHHHHHHHHhccCCC
Confidence 3568999999999998765554321 2 5999999998776 77888778888666 99999999875 2 2 4
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
++||+|++.. ..+..+.+++.+.++|||||+++-+..
T Consensus 155 ~~fD~V~~d~-----~~~~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 155 GSYDFIFVDA-----DKDNYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp TCBSEEEECS-----CSTTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred CCEEEEEEcC-----chHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 7899999853 123457789999999999999986543
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=6.5e-09 Score=110.28 Aligned_cols=103 Identities=20% Similarity=0.202 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||||||+|.++..+++... ..+++++|. +.++ .+++....+++.++ |+++.+|+.+ ..|..+|+|++
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~----~~~~~~~D~-~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~-~~~~~~D~v~~ 254 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAP----HLRGTLVEL-AGPAERARRRFADAGLADR-VTVAEGDFFK-PLPVTADVVLL 254 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-HHHHHHHHHHHHHTTCTTT-EEEEECCTTS-CCSCCEEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCC----CCEEEEEeC-HHHHHHHHHHHHhcCCCCc-eEEEeCCCCC-cCCCCCCEEEE
Confidence 567999999999999865444321 259999999 8766 77777777788776 9999999986 44556999988
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
...-+....+....++..+.+.|||||.++-
T Consensus 255 ~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i 285 (374)
T 1qzz_A 255 SFVLLNWSDEDALTILRGCVRALEPGGRLLV 285 (374)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eccccCCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 5432222222224688899999999997664
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=4.7e-09 Score=109.18 Aligned_cols=108 Identities=14% Similarity=0.185 Sum_probs=74.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--cCCCCCcEEEEEecccccC---CCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--EQWAQSDVTIVSEDMRTWN---APEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--n~~~~~nV~vi~~D~~~~~---~p~k~ 415 (626)
++.+|||+|||+|.++..++ +..+. .+|++||.++.++ .+++.... .+..+.+|+++.+|+.++. .+++|
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~---~~~~~-~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~f 170 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVL---RHGTV-EHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTY 170 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHH---TCTTC-CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCE
T ss_pred CCCeEEEEcCCCCHHHHHHH---hCCCC-CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCce
Confidence 45789999999999986443 32222 4999999999877 55554421 1222224999999998864 35789
Q ss_pred cEEEeccccccCCCCCc--HHHHHHHHHhcccCcEEEecc
Q psy17734 416 DIMVSELLGSFGDNELS--PECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 416 DiIVSEllgsfg~~El~--pe~L~~~~r~LkpgGi~IP~~ 453 (626)
|+|+++.....+..+.. .+++..+.+.|||||+++-+.
T Consensus 171 DvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 210 (304)
T 3bwc_A 171 DVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG 210 (304)
T ss_dssp EEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 99999776544332222 688999999999999998664
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.4e-10 Score=111.92 Aligned_cols=106 Identities=12% Similarity=-0.003 Sum_probs=81.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-------CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-------PE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-------p~ 413 (626)
+..+|||+|||+|..+..++++. +...+|++||.++.++ .++++....+..++ |+++.+|+.++.. .+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~-i~~~~gda~~~l~~~~~~~~~~ 135 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLAL---PDDGQVITCDINEGWTKHAHPYWREAKQEHK-IKLRLGPALDTLHSLLNEGGEH 135 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTS---CTTCEEEEEECCCSSCCCSHHHHHHTTCTTT-EEEEESCHHHHHHHHHHHHCSS
T ss_pred CcCEEEEeeCCcCHHHHHHHHhC---CCCCEEEEEECCHHHHHHHHHHHHHcCCCCc-EEEEEcCHHHHHHHHhhccCCC
Confidence 35789999999999987544432 2125999999999776 77888888888777 9999999987521 47
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEecccee
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTS 456 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~ 456 (626)
+||+|++... .+..+.+++.+.+.|||||+++-+....
T Consensus 136 ~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~ 173 (242)
T 3r3h_A 136 QFDFIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFW 173 (242)
T ss_dssp CEEEEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred CEeEEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence 8999988532 2334678889999999999999765543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.8e-09 Score=106.25 Aligned_cols=103 Identities=18% Similarity=0.153 Sum_probs=77.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc-C-C-------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW-N-A------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~-~-~------- 411 (626)
++.+|||+|||+|.++..+++. .+...+|+++|.++.+. .+++....+++.++ |+++.+|+.+. . .
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~---~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~-v~~~~~d~~~~~~~~~~~~~~~ 135 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASA---LPEDGKILCCDVSEEWTNVARKYWKENGLENK-IFLKLGSALETLQVLIDSKSAP 135 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHH---SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGG-EEEEESCHHHHHHHHHHCSSCC
T ss_pred CcCEEEEEeCCCCHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCC-EEEEECCHHHHHHHHHhhcccc
Confidence 4578999999999998654443 22125999999999876 77777777888766 99999998763 1 1
Q ss_pred --------C-CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 412 --------P-EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 412 --------p-~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
+ ++||+|++.. ..+..+.++..+.+.|||||+++-..
T Consensus 136 ~~~~~f~~~~~~fD~I~~~~-----~~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 136 SWASDFAFGPSSIDLFFLDA-----DKENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp GGGTTTCCSTTCEEEEEECS-----CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cccccccCCCCCcCEEEEeC-----CHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 2 6899999852 22334678899999999999988543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.3e-09 Score=112.86 Aligned_cols=106 Identities=14% Similarity=0.094 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCC-cEEEEEecccccCCCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQS-DVTIVSEDMRTWNAPEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~-nV~vi~~D~~~~~~p~k~DiIV 419 (626)
.+.+|||+|||+|.++..+++... + .+|+|||.|+.++ .++++...++..++ +|+++.+|+.+...+++||+|+
T Consensus 222 ~~~~VLDlGcG~G~~s~~la~~~p--~--~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii 297 (375)
T 4dcm_A 222 LEGEIVDLGCGNGVIGLTLLDKNP--Q--AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVL 297 (375)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCT--T--CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEEEEE
T ss_pred CCCeEEEEeCcchHHHHHHHHHCC--C--CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCeeEEE
Confidence 347999999999999965444321 2 5999999999887 77778888876532 3888999998855557899999
Q ss_pred eccccccC---CCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFG---DNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg---~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+...-+.+ ..+...+++..+.+.|||||+++-
T Consensus 298 ~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 332 (375)
T 4dcm_A 298 CNPPFHQQHALTDNVAWEMFHHARRCLKINGELYI 332 (375)
T ss_dssp ECCCC-------CCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 98753211 112234688999999999998774
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.1e-09 Score=108.40 Aligned_cols=106 Identities=16% Similarity=0.208 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc--CC-------CCCcEEEEEecccccC-
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE--QW-------AQSDVTIVSEDMRTWN- 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n--~~-------~~~nV~vi~~D~~~~~- 410 (626)
++.+|||+|||+|.++..+ ++. +. .+|++||.++.++ .+++.. .. ++ .+.+|+++.+|+.++-
T Consensus 75 ~~~~VLdiG~G~G~~~~~l---~~~-~~-~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~ 148 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREV---LQH-DV-DEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIK 148 (281)
T ss_dssp CCCEEEEEECTTSHHHHHH---TTS-CC-SEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred CCCeEEEEcCCcCHHHHHH---HhC-CC-CEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhc
Confidence 3578999999999998643 333 32 5999999999877 566554 22 32 2224999999987752
Q ss_pred CCCCccEEEeccccccCCCCC--cHHHHHHHHHhcccCcEEEecc
Q psy17734 411 APEKADIMVSELLGSFGDNEL--SPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 411 ~p~k~DiIVSEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
.+++||+|+++....++..+. ..+++..+.+.|||||+++-+.
T Consensus 149 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 149 NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 157899999987654433232 3788999999999999998764
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-09 Score=107.81 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=69.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc--CC-CCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW--NA-PEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~--~~-p~k~DiI 418 (626)
++.+|||||||+|.++..++.. + .+|+|+|.++.+....+. +++++.+|+.++ +. +++||+|
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~----~--~~v~gvD~s~~~~~~a~~---------~~~~~~~d~~~~~~~~~~~~fD~i 105 (240)
T 3dli_A 41 GCRRVLDIGCGRGEFLELCKEE----G--IESIGVDINEDMIKFCEG---------KFNVVKSDAIEYLKSLPDKYLDGV 105 (240)
T ss_dssp TCSCEEEETCTTTHHHHHHHHH----T--CCEEEECSCHHHHHHHHT---------TSEEECSCHHHHHHTSCTTCBSEE
T ss_pred CCCeEEEEeCCCCHHHHHHHhC----C--CcEEEEECCHHHHHHHHh---------hcceeeccHHHHhhhcCCCCeeEE
Confidence 4578999999999998644332 3 489999999977633322 278889999885 43 3789999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
++..+-.....+....++..+.+.|||||.++-
T Consensus 106 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 138 (240)
T 3dli_A 106 MISHFVEHLDPERLFELLSLCYSKMKYSSYIVI 138 (240)
T ss_dssp EEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEE
T ss_pred EECCchhhCCcHHHHHHHHHHHHHcCCCcEEEE
Confidence 984433233333346789999999999998874
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3.7e-09 Score=111.62 Aligned_cols=115 Identities=15% Similarity=0.240 Sum_probs=81.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--cCCCCCcEEEEEeccccc--CC-CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--EQWAQSDVTIVSEDMRTW--NA-PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--n~~~~~nV~vi~~D~~~~--~~-p~k~ 415 (626)
+..+|||||||+|.++..++ +..+. .+|++||.++.++ .++++... .++.+.+|+++.+|+.++ .. .++|
T Consensus 120 ~~~~VLdIG~G~G~~a~~la---~~~~~-~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~f 195 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVA---RHASI-EQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSY 195 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHT---TCTTC-CEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred CCCEEEEECCCccHHHHHHH---HcCCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCc
Confidence 35799999999999986433 32222 5999999999877 66665543 245322499999999875 22 3689
Q ss_pred cEEEeccccccCCCCC--cHHHHHHHHHhcccCcEEEeccceeeEEe
Q psy17734 416 DIMVSELLGSFGDNEL--SPECLYAAQKYLKEDGISIPYNYTSYIAP 460 (626)
Q Consensus 416 DiIVSEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP~~~t~y~ap 460 (626)
|+|+++.....+..+. ..+++..+.+.|||||+++-+....|..+
T Consensus 196 DlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~ 242 (334)
T 1xj5_A 196 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHM 242 (334)
T ss_dssp EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCH
T ss_pred cEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccccH
Confidence 9999976543332222 36789999999999999998755555443
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.9e-09 Score=107.66 Aligned_cols=97 Identities=16% Similarity=0.160 Sum_probs=74.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++.. +++ .|. +|+|+|.++.++ .++++...++.. ++++.+|+.+.-.+++||+|++
T Consensus 120 ~~~~VLDiGcG~G~l~~~---la~-~g~--~v~gvDi~~~~v~~a~~n~~~~~~~---v~~~~~d~~~~~~~~~fD~Vv~ 190 (254)
T 2nxc_A 120 PGDKVLDLGTGSGVLAIA---AEK-LGG--KALGVDIDPMVLPQAEANAKRNGVR---PRFLEGSLEAALPFGPFDLLVA 190 (254)
T ss_dssp TTCEEEEETCTTSHHHHH---HHH-TTC--EEEEEESCGGGHHHHHHHHHHTTCC---CEEEESCHHHHGGGCCEEEEEE
T ss_pred CCCEEEEecCCCcHHHHH---HHH-hCC--eEEEEECCHHHHHHHHHHHHHcCCc---EEEEECChhhcCcCCCCCEEEE
Confidence 467999999999999854 333 343 999999999877 777777777763 8999999887422468999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..+. +....++..+.+.|||||.++-.
T Consensus 191 n~~~-----~~~~~~l~~~~~~LkpgG~lils 217 (254)
T 2nxc_A 191 NLYA-----ELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp ECCH-----HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcH-----HHHHHHHHHHHHHcCCCCEEEEE
Confidence 6532 12456788889999999998753
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.89 E-value=3.3e-09 Score=106.47 Aligned_cols=103 Identities=13% Similarity=0.061 Sum_probs=70.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc---CCC----C
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW---NAP----E 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~---~~p----~ 413 (626)
++.+|||+|||+|.++..++.... + .+|+|+|.++.++ .++++...+++.++ |+++++|+.+. ..+ +
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~--~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~ 139 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLN--G--WYFLATEVDDMCFNYAKKNVEQNNLSDL-IKVVKVPQKTLLMDALKEESEI 139 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHH--C--CEEEEEESCHHHHHHHHHHHHHTTCTTT-EEEEECCTTCSSTTTSTTCCSC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCC--C--CeEEEEECCHHHHHHHHHHHHHcCCCcc-EEEEEcchhhhhhhhhhcccCC
Confidence 457999999999998865444332 2 4999999999877 77888888888876 99999998762 223 4
Q ss_pred CccEEEeccccccCCC-C---C----------cHHHHHHHHHhcccCcEEE
Q psy17734 414 KADIMVSELLGSFGDN-E---L----------SPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 414 k~DiIVSEllgsfg~~-E---l----------~pe~L~~~~r~LkpgGi~I 450 (626)
+||+|++++.- +... + . ...++.++.+.|||||.+.
T Consensus 140 ~fD~i~~npp~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~ 189 (254)
T 2h00_A 140 IYDFCMCNPPF-FANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELE 189 (254)
T ss_dssp CBSEEEECCCC-C-------------------------CTTTTHHHHTHHH
T ss_pred cccEEEECCCC-ccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEE
Confidence 79999998652 2211 1 0 1123455667888888643
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1e-08 Score=109.24 Aligned_cols=134 Identities=18% Similarity=0.191 Sum_probs=90.9
Q ss_pred HHHHhhCCHHHHHHHHHHHHH-------HHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCH
Q psy17734 308 TYEVFEKDPIKYIRYQEAVQQ-------ALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNM 380 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI~~-------al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np 380 (626)
.|+.+.+++.....|.+++.. .+.+.. +..+..+|||||||+|.++..++++.. ..+++++|. +
T Consensus 165 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~----~~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~ 235 (369)
T 3gwz_A 165 FWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAY----DFSGAATAVDIGGGRGSLMAAVLDAFP----GLRGTLLER-P 235 (369)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHS----CCTTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-H
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhC----CCccCcEEEEeCCCccHHHHHHHHHCC----CCeEEEEcC-H
Confidence 466667777666666555432 222221 123467999999999999865444321 259999999 8
Q ss_pred HHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 381 SAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 381 ~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.++ .+++.....++.++ |+++.+|+.+ ..|..+|+|++-..-+....+....+|..+.+.|||||.++-.
T Consensus 236 ~~~~~a~~~~~~~~l~~~-v~~~~~d~~~-~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~ 306 (369)
T 3gwz_A 236 PVAEEARELLTGRGLADR-CEILPGDFFE-TIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVI 306 (369)
T ss_dssp HHHHHHHHHHHHTTCTTT-EEEEECCTTT-CCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred HHHHHHHHhhhhcCcCCc-eEEeccCCCC-CCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 766 67777777788777 9999999983 4455899998744322222222335788999999999987743
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.1e-09 Score=111.58 Aligned_cols=108 Identities=18% Similarity=0.255 Sum_probs=77.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--cCCCCCcEEEEEecccccC--CCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--EQWAQSDVTIVSEDMRTWN--APEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--n~~~~~nV~vi~~D~~~~~--~p~k~D 416 (626)
++.+|||+|||+|.++..+ ++..+. .+|++||.++.++ .++++... +++++.+|+++.+|+.++. .+++||
T Consensus 116 ~~~~VLdiG~G~G~~~~~l---~~~~~~-~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 191 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIREL---CKYKSV-ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYD 191 (321)
T ss_dssp SCCEEEEEECTTCHHHHHH---TTCTTC-CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred CCCEEEEEcCCccHHHHHH---HHcCCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCce
Confidence 3478999999999998543 333222 5999999999887 66665433 3342224999999998752 357899
Q ss_pred EEEeccccccCCCCC-c-HHHHHHHHHhcccCcEEEecc
Q psy17734 417 IMVSELLGSFGDNEL-S-PECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 417 iIVSEllgsfg~~El-~-pe~L~~~~r~LkpgGi~IP~~ 453 (626)
+|+++....++..+. . .+++..+.+.|||||+++-+.
T Consensus 192 vIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 192 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 999976543322222 2 688999999999999998764
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=9.1e-09 Score=99.85 Aligned_cols=95 Identities=17% Similarity=0.096 Sum_probs=71.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIV 419 (626)
++.+|||+|||+|.++..+++. + .+|+|+|.++.++ .++++...+++. |++++.+|..+... .++||+|+
T Consensus 77 ~~~~vLdiG~G~G~~~~~la~~----~--~~v~~vD~~~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~~D~i~ 148 (210)
T 3lbf_A 77 PQSRVLEIGTGSGYQTAILAHL----V--QHVCSVERIKGLQWQARRRLKNLDLH--NVSTRHGDGWQGWQARAPFDAII 148 (210)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH----S--SEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHh----C--CEEEEEecCHHHHHHHHHHHHHcCCC--ceEEEECCcccCCccCCCccEEE
Confidence 5679999999999998654443 2 4999999999877 677777777775 59999999988543 36899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+...- . ..+ +.+.+.|||||+++-.
T Consensus 149 ~~~~~----~-~~~---~~~~~~L~pgG~lv~~ 173 (210)
T 3lbf_A 149 VTAAP----P-EIP---TALMTQLDEGGILVLP 173 (210)
T ss_dssp ESSBC----S-SCC---THHHHTEEEEEEEEEE
T ss_pred Eccch----h-hhh---HHHHHhcccCcEEEEE
Confidence 85321 1 111 2567899999987643
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-08 Score=101.33 Aligned_cols=102 Identities=11% Similarity=0.101 Sum_probs=78.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc-C-C--CCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW-N-A--PEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~-~-~--p~k~D 416 (626)
++.+|||+|||+|.++..++++.. + .+|+++|.++.+. .++++....+..++ |+++.+|+.+. . . +++||
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~--~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD 128 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALP--E--ATIVSIERDERRYEEAHKHVKALGLESR-IELLFGDALQLGEKLELYPLFD 128 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCT--T--CEEEEECCCHHHHHHHHHHHHHTTCTTT-EEEECSCGGGSHHHHTTSCCEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCC--C--CEEEEEECCHHHHHHHHHHHHHcCCCCc-EEEEECCHHHHHHhcccCCCcc
Confidence 457999999999999865444321 2 5999999999776 77777777888766 99999999875 2 2 46899
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
+|++... .+..+.++..+.+.|||||+++-..
T Consensus 129 ~I~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 129 VLFIDAA-----KGQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EEEEEGG-----GSCHHHHHHHHGGGEEEEEEEEEET
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 9998543 1245778899999999999988653
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-09 Score=103.17 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=71.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..++.. +. .+|+|+|.++.++ .+++... . .. +++++.+|+.++..+ ++||+|+
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~~~----~~-~~v~~~D~s~~~~~~a~~~~~--~-~~-~i~~~~~d~~~~~~~~~~fD~v~ 112 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELFLG----GF-PNVTSVDYSSVVVAAMQACYA--H-VP-QLRWETMDVRKLDFPSASFDVVL 112 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHHHT----TC-CCEEEEESCHHHHHHHHHHTT--T-CT-TCEEEECCTTSCCSCSSCEEEEE
T ss_pred CCCeEEEECCCCcHHHHHHHHc----CC-CcEEEEeCCHHHHHHHHHhcc--c-CC-CcEEEEcchhcCCCCCCcccEEE
Confidence 4578999999999998643332 32 2899999999887 4444432 1 23 499999999998654 6899999
Q ss_pred eccc-cccCCC------------CCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELL-GSFGDN------------ELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEll-gsfg~~------------El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+..+ +.+... +....++..+.+.|||||.++-.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 158 (215)
T 2pxx_A 113 EKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISM 158 (215)
T ss_dssp EESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEE
Confidence 8543 222111 11256788899999999987743
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.5e-09 Score=110.69 Aligned_cols=133 Identities=20% Similarity=0.199 Sum_probs=89.5
Q ss_pred HHHHhhCCHHHHHHHHHHH------HHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHH
Q psy17734 308 TYEVFEKDPIKYIRYQEAV------QQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMS 381 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI------~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~ 381 (626)
.|+.+.+|+.....|.+++ ...+.+.. +..+ .+|||+|||+|.++..+++... + .+++++|. +.
T Consensus 132 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~----~~~~-~~vlDvG~G~G~~~~~l~~~~p--~--~~~~~~D~-~~ 201 (334)
T 2ip2_A 132 FYSYLKRCPDAGRRFLLAMKASNLAFHEIPRLL----DFRG-RSFVDVGGGSGELTKAILQAEP--S--ARGVMLDR-EG 201 (334)
T ss_dssp HHHHHHHCHHHHHHHHHHHGGGHHHHHHHHHHS----CCTT-CEEEEETCTTCHHHHHHHHHCT--T--CEEEEEEC-TT
T ss_pred HHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhC----CCCC-CEEEEeCCCchHHHHHHHHHCC--C--CEEEEeCc-HH
Confidence 4566667777666666655 11222211 1123 7999999999999865443321 2 59999999 76
Q ss_pred HH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 382 AV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 382 a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
++ .+++.....++.++ |+++.+|+.+ ..++++|+|++...-+....+....++..+.+.|||||.++-.
T Consensus 202 ~~~~a~~~~~~~~~~~~-v~~~~~d~~~-~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 271 (334)
T 2ip2_A 202 SLGVARDNLSSLLAGER-VSLVGGDMLQ-EVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVI 271 (334)
T ss_dssp CTHHHHHHTHHHHHTTS-EEEEESCTTT-CCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred HHHHHHHHHhhcCCCCc-EEEecCCCCC-CCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 55 66666666666666 9999999988 5667899998744322112222346888999999999987654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.1e-09 Score=108.93 Aligned_cols=105 Identities=9% Similarity=0.044 Sum_probs=70.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCC----cEEEEEecc------cccC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQS----DVTIVSEDM------RTWN 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~----nV~vi~~D~------~~~~ 410 (626)
++.+|||||||+|......+ +..+ .+|+|||.++.++ .|++.....+...+ +++++.+|+ .++.
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~---~~~~--~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~ 122 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYF---YGEI--ALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVR 122 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHH---HTTC--SEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHH
T ss_pred CCCeEEEEecCCcHhHHHHH---hcCC--CeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhh
Confidence 46799999999997553222 2222 4999999999887 66655444432110 267888888 3331
Q ss_pred ---CCCCccEEEecc-ccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 411 ---APEKADIMVSEL-LGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 411 ---~p~k~DiIVSEl-lgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
..++||+|+|-. +.++...+....++..+.+.|||||++|-
T Consensus 123 ~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~ 167 (302)
T 2vdw_A 123 EVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLI 167 (302)
T ss_dssp TTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 236899998854 33333445567899999999999999874
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=5.8e-10 Score=110.83 Aligned_cols=102 Identities=14% Similarity=0.098 Sum_probs=75.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++.. + .+|+|+|.++.++ .++++...++..++ |+++++|+.++..+++||+|++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~----~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~D~v~~ 150 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT----G--MRVIAIDIDPVKIALARNNAEVYGIADK-IEFICGDFLLLASFLKADVVFL 150 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT----T--CEEEEEESCHHHHHHHHHHHHHTTCGGG-EEEEESCHHHHGGGCCCSEEEE
T ss_pred CCCEEEECccccCHHHHHHHHc----C--CEEEEEECCHHHHHHHHHHHHHcCCCcC-eEEEECChHHhcccCCCCEEEE
Confidence 4679999999999998654432 3 4999999999877 77777777877555 9999999999876689999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
...-.... .....+..+.+.|+|||.++-.
T Consensus 151 ~~~~~~~~--~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 151 SPPWGGPD--YATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp CCCCSSGG--GGGSSSBCTTTSCSSCHHHHHH
T ss_pred CCCcCCcc--hhhhHHHHHHhhcCCcceeHHH
Confidence 76422111 1112344566789999975543
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.9e-09 Score=106.95 Aligned_cols=104 Identities=16% Similarity=0.177 Sum_probs=76.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++.. .+ ..+|+|+|.++.++ .++++...++.. +|+++++|+.+...+++||+|++
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~~---~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~fD~Iv~ 182 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALASE---RP-DCEIIAVDRMPDAVSLAQRNAQHLAIK--NIHILQSDWFSALAGQQFAMIVS 182 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHHH---CT-TSEEEEECSSHHHHHHHHHHHHHHTCC--SEEEECCSTTGGGTTCCEEEEEE
T ss_pred CCCEEEEecCCccHHHHHHHHh---CC-CCEEEEEECCHHHHHHHHHHHHHcCCC--ceEEEEcchhhhcccCCccEEEE
Confidence 4568999999999998644332 22 15999999999887 777777777775 49999999988544578999999
Q ss_pred ccccccCCC-----------C-------------CcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDN-----------E-------------LSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~-----------E-------------l~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+.- .... | ....++..+.++|||||.++-.
T Consensus 183 npPy-~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~ 237 (276)
T 2b3t_A 183 NPPY-IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 237 (276)
T ss_dssp CCCC-BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCC-CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 7531 1111 1 1245677788999999998754
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=98.87 E-value=8.8e-09 Score=101.81 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=71.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++.. + .+|+|+|.++.++...+.. .... +++++.+|+.+++. +++||+|++
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~----~--~~v~~vD~s~~~~~~a~~~---~~~~-~~~~~~~d~~~~~~~~~~fD~v~~ 122 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRT----G--YKAVGVDISEVMIQKGKER---GEGP-DLSFIKGDLSSLPFENEQFEAIMA 122 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT----T--CEEEEEESCHHHHHHHHTT---TCBT-TEEEEECBTTBCSSCTTCEEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHc----C--CeEEEEECCHHHHHHHHhh---cccC-CceEEEcchhcCCCCCCCccEEEE
Confidence 4679999999999998644332 3 4999999999877333322 1223 59999999999876 478999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
...-.. .+....++..+.+.|||||.++-.
T Consensus 123 ~~~l~~--~~~~~~~l~~~~~~L~pgG~l~i~ 152 (242)
T 3l8d_A 123 INSLEW--TEEPLRALNEIKRVLKSDGYACIA 152 (242)
T ss_dssp ESCTTS--SSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred cChHhh--ccCHHHHHHHHHHHhCCCeEEEEE
Confidence 432111 123457899999999999987744
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.1e-09 Score=105.74 Aligned_cols=98 Identities=12% Similarity=-0.040 Sum_probs=72.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC------CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP------EK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p------~k 414 (626)
++.+|||+|||+|.++..++.. + .+|+|||.++.++ .+++.. . .. +++++.+|+.++..+ ..
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~----~--~~v~gvD~s~~~~~~a~~~~---~-~~-~~~~~~~d~~~~~~~~~~~~~~~ 124 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQF----F--PRVIGLDVSKSALEIAAKEN---T-AA-NISYRLLDGLVPEQAAQIHSEIG 124 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHH----S--SCEEEEESCHHHHHHHHHHS---C-CT-TEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCCeEEEEcCCCCHHHHHHHHh----C--CCEEEEECCHHHHHHHHHhC---c-cc-CceEEECcccccccccccccccC
Confidence 4578999999999998654433 2 2899999999877 444432 1 12 499999999987543 24
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+|+|++..+-+....+....++..+.+.|||||.++
T Consensus 125 ~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 160 (245)
T 3ggd_A 125 DANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMY 160 (245)
T ss_dssp SCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEE
T ss_pred ccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 899999765555444445678999999999999865
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.87 E-value=7.5e-09 Score=110.03 Aligned_cols=104 Identities=13% Similarity=0.053 Sum_probs=75.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiI 418 (626)
+..+|||||||+|.++..++++.. + .+|+++|. |.++ .+++.....++.++ |+++.+|+.+.+ .|+.+|+|
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p--~--~~~~~~D~-~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~p~~~D~v 252 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNK--E--VEVTIVDL-PQQLEMMRKQTAGLSGSER-IHGHGANLLDRDVPFPTGFDAV 252 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHST--T--CEEEEEEC-HHHHHHHHHHHTTCTTGGG-EEEEECCCCSSSCCCCCCCSEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCC--C--CEEEEEeC-HHHHHHHHHHHHhcCcccc-eEEEEccccccCCCCCCCcCEE
Confidence 457999999999999865444322 2 59999999 7665 66666655666666 999999999874 56789999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
++-.+-+....+....+|..+.+.|||||.++-
T Consensus 253 ~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i 285 (363)
T 3dp7_A 253 WMSQFLDCFSEEEVISILTRVAQSIGKDSKVYI 285 (363)
T ss_dssp EEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred EEechhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 874432221222234578889999999998764
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.87 E-value=8.3e-09 Score=100.36 Aligned_cols=94 Identities=14% Similarity=0.131 Sum_probs=69.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-----CCCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-----NAPEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-----~~p~k~D 416 (626)
++.+|||+|||+|.++..++ +. + .+|+|+|.++.++...+.. . +++++.+|+.++ ....+||
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~---~~-~--~~v~~vD~s~~~~~~a~~~------~-~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALA---DR-G--IEAVGVDGDRTLVDAARAA------G-AGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHH---TT-T--CEEEEEESCHHHHHHHHHT------C-SSCEEECCHHHHHTTCSCCCCCEE
T ss_pred CCCEEEEeCCCCCHHHHHHH---HC-C--CEEEEEcCCHHHHHHHHHh------c-ccccchhhHHhhcccccccCCCcc
Confidence 45799999999999985433 22 4 4999999999877433322 2 388899998887 2235699
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+|++...-. .+....++..+.+.|||||.++-
T Consensus 119 ~v~~~~~l~---~~~~~~~l~~~~~~L~pgG~l~~ 150 (227)
T 3e8s_A 119 LICANFALL---HQDIIELLSAMRTLLVPGGALVI 150 (227)
T ss_dssp EEEEESCCC---SSCCHHHHHHHHHTEEEEEEEEE
T ss_pred EEEECchhh---hhhHHHHHHHHHHHhCCCeEEEE
Confidence 999854322 34457899999999999999874
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.4e-08 Score=107.33 Aligned_cols=102 Identities=24% Similarity=0.320 Sum_probs=74.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||||||+|.++..+++.. ...+++++|. +.++ .++++...++..++ |+++.+|+.+ ..+..+|+|++
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~----~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~-~~~~~~D~v~~ 255 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRA----PHVSATVLEM-AGTVDTARSYLKDEGLSDR-VDVVEGDFFE-PLPRKADAIIL 255 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHC----TTCEEEEEEC-TTHHHHHHHHHHHTTCTTT-EEEEECCTTS-CCSSCEEEEEE
T ss_pred cCcEEEEeCCcCcHHHHHHHHhC----CCCEEEEecC-HHHHHHHHHHHHhcCCCCc-eEEEeCCCCC-CCCCCccEEEE
Confidence 56799999999999986544432 2269999999 6655 77777777788776 9999999986 34556999887
Q ss_pred cc-ccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 421 EL-LGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 El-lgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
.. +..+ ..+....++..+.+.|||||.++-
T Consensus 256 ~~vl~~~-~~~~~~~~l~~~~~~L~pgG~l~i 286 (360)
T 1tw3_A 256 SFVLLNW-PDHDAVRILTRCAEALEPGGRILI 286 (360)
T ss_dssp ESCGGGS-CHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred cccccCC-CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 43 3222 112224678889999999997763
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.2e-08 Score=105.26 Aligned_cols=102 Identities=15% Similarity=0.146 Sum_probs=76.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCc---cE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKA---DI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~---Di 417 (626)
++.+|||+|||+|.++..++.. .+ .+|+|+|.|+.++ .++++...++..++ |+++++|+.+.. +++| |+
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~---~~--~~v~~vDis~~al~~A~~n~~~~~l~~~-v~~~~~D~~~~~-~~~f~~~D~ 195 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF---SD--AIVFATDVSSKAVEIARKNAERHGVSDR-FFVRKGEFLEPF-KEKFASIEM 195 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH---SS--CEEEEEESCHHHHHHHHHHHHHTTCTTS-EEEEESSTTGGG-GGGTTTCCE
T ss_pred CCCEEEEEeCchhHHHHHHHHC---CC--CEEEEEECCHHHHHHHHHHHHHcCCCCc-eEEEECcchhhc-ccccCCCCE
Confidence 3468999999999998654433 12 5999999999887 88888888888876 999999998742 3578 99
Q ss_pred EEeccccccCC---------CCC---------cHHHHHHHH-HhcccCcEEEe
Q psy17734 418 MVSELLGSFGD---------NEL---------SPECLYAAQ-KYLKEDGISIP 451 (626)
Q Consensus 418 IVSEllgsfg~---------~El---------~pe~L~~~~-r~LkpgGi~IP 451 (626)
|||++.- ... +|. -.+++..+. +.|+|||.++-
T Consensus 196 IvsnPPy-i~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 196 ILSNPPY-VKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp EEECCCC-BCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred EEEcCCC-CCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 9997531 110 111 015788888 99999999883
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.9e-09 Score=105.57 Aligned_cols=104 Identities=14% Similarity=0.094 Sum_probs=80.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--C------C
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--A------P 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~------p 412 (626)
+..+|||+|||+|..+..++++.. ...+|+++|.++.+. .++++....++.++ |+++.+|+.++. . +
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~-i~~~~gda~~~l~~l~~~~~~~ 145 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIP---DDGKITAIDFDREAYEIGLPFIRKAGVEHK-INFIESDAMLALDNLLQGQESE 145 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSC---TTCEEEEEESCHHHHHHHHHHHHHTTCGGG-EEEEESCHHHHHHHHHHSTTCT
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCc-EEEEEcCHHHHHHHHHhccCCC
Confidence 356899999999999876554422 125999999999776 78888888888766 999999998751 2 4
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
++||+|++.. ..+..+++++.+.+.|||||+++-+..
T Consensus 146 ~~fD~I~~d~-----~~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 146 GSYDFGFVDA-----DKPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp TCEEEEEECS-----CGGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred CCcCEEEECC-----chHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 7899999852 122347788999999999999987654
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.6e-08 Score=94.87 Aligned_cols=95 Identities=12% Similarity=0.023 Sum_probs=73.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++. .+ .+|+|+|.++.++ .++++...+++ + +++++.+|+.+....+++|+|++
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~----~~--~~v~~vD~~~~~~~~a~~~~~~~~~-~-~~~~~~~d~~~~~~~~~~D~i~~ 106 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAK----RC--KFVYAIDYLDGAIEVTKQNLAKFNI-K-NCQIIKGRAEDVLDKLEFNKAFI 106 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHT----TS--SEEEEEECSHHHHHHHHHHHHHTTC-C-SEEEEESCHHHHGGGCCCSEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHh----cC--CeEEEEeCCHHHHHHHHHHHHHcCC-C-cEEEEECCccccccCCCCcEEEE
Confidence 567999999999999864433 22 5999999999877 67777777777 3 49999999988322368999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
... +..+.++..+.+. |||.++-.
T Consensus 107 ~~~------~~~~~~l~~~~~~--~gG~l~~~ 130 (183)
T 2yxd_A 107 GGT------KNIEKIIEILDKK--KINHIVAN 130 (183)
T ss_dssp CSC------SCHHHHHHHHHHT--TCCEEEEE
T ss_pred CCc------ccHHHHHHHHhhC--CCCEEEEE
Confidence 554 4557788888777 99987743
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=7.8e-09 Score=107.67 Aligned_cols=109 Identities=17% Similarity=0.260 Sum_probs=75.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--cCC-CCCcEEEEEeccccc--CCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--EQW-AQSDVTIVSEDMRTW--NAPEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--n~~-~~~nV~vi~~D~~~~--~~p~k~ 415 (626)
+..+|||||||+|.++..++ ++.+ ..+|++||.++.++ .+++.... +++ ..+ |+++.+|+.++ ..+++|
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~---~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~r-v~v~~~Da~~~l~~~~~~f 169 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVV---KHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSK-LTLHVGDGFEFMKQNQDAF 169 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHT---TCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTT-EEEEESCHHHHHHTCSSCE
T ss_pred CCCEEEEECCCchHHHHHHH---HcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCc-EEEEECcHHHHHhhCCCCc
Confidence 35799999999999986433 3222 25999999999877 66665543 445 344 99999999874 234789
Q ss_pred cEEEeccccccCCCCC--cHHHHHHHHHhcccCcEEEeccce
Q psy17734 416 DIMVSELLGSFGDNEL--SPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 416 DiIVSEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
|+|+++.....+..+. ..+++..+.+.|||||+++-+...
T Consensus 170 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 170 DVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 9999977543332221 257889999999999999876543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.2e-09 Score=98.65 Aligned_cols=97 Identities=15% Similarity=0.135 Sum_probs=70.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..++.. + .+|+++|.++.++ .+++.. . +++++.+|+.++..+ +++|+|+
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~----~--~~v~~~D~~~~~~~~a~~~~------~-~~~~~~~d~~~~~~~~~~~D~i~ 112 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQ----G--HDVLGTDLDPILIDYAKQDF------P-EARWVVGDLSVDQISETDFDLIV 112 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT----T--CEEEEEESCHHHHHHHHHHC------T-TSEEEECCTTTSCCCCCCEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHC----C--CcEEEEcCCHHHHHHHHHhC------C-CCcEEEcccccCCCCCCceeEEE
Confidence 4679999999999998644332 3 4999999999877 333322 2 499999999987654 6899999
Q ss_pred ec-cccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SE-LLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SE-llgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+. .+-.+...+....++..+.+.|||||.++-
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~ 145 (195)
T 3cgg_A 113 SAGNVMGFLAEDGREPALANIHRALGADGRAVI 145 (195)
T ss_dssp ECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEE
Confidence 85 222222222235688899999999998774
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-08 Score=100.66 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-CCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-APEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-~p~k~DiIV 419 (626)
++.+|||+|||+|.++..+++. + .+|+++|.++.+. .++++...+++.++ ++++.+|+.+.. ..++||+|+
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~----~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~D~v~ 163 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEV----A--GEVWTFEAVEEFYKTAQKNLKKFNLGKN-VKFFNVDFKDAEVPEGIFHAAF 163 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH----S--SEEEEECSCHHHHHHHHHHHHHTTCCTT-EEEECSCTTTSCCCTTCBSEEE
T ss_pred CCCEEEEeCCCccHHHHHHHHh----C--CEEEEEecCHHHHHHHHHHHHHcCCCCc-EEEEEcChhhcccCCCcccEEE
Confidence 5679999999999998755444 2 4999999999877 66777767777565 999999999876 446899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+... ...+++..+.+.|||||.++-
T Consensus 164 ~~~~-------~~~~~l~~~~~~L~~gG~l~~ 188 (248)
T 2yvl_A 164 VDVR-------EPWHYLEKVHKSLMEGAPVGF 188 (248)
T ss_dssp ECSS-------CGGGGHHHHHHHBCTTCEEEE
T ss_pred ECCc-------CHHHHHHHHHHHcCCCCEEEE
Confidence 8432 223678888999999998774
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=7.8e-09 Score=106.22 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=72.6
Q ss_pred CCEEEEEcCCCch----HHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHH--------------H---------cC-
Q psy17734 343 VTTIMVVGAGRGP----LVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKK--------------E---------EQ- 393 (626)
Q Consensus 343 ~~~VLDvG~GtG~----Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~--------------~---------n~- 393 (626)
..+|||+|||||- +++.++......+.+.+|+|+|.|+.++ .|++.+- + ++
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 4689999999997 5543333321111125999999999887 5554320 0 00
Q ss_pred C------CCCcEEEEEecccccCC--CCCccEEEec-cccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 394 W------AQSDVTIVSEDMRTWNA--PEKADIMVSE-LLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 394 ~------~~~nV~vi~~D~~~~~~--p~k~DiIVSE-llgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
+ .++ |++.++|+.+.+. .++||+|+|- .+.+| +.+....++..+.+.|||||.++-..
T Consensus 186 ~~v~~~lr~~-V~F~~~dl~~~~~~~~~~fDlI~crnvliyf-~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 186 VRVRQELANY-VEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEECHHHHTT-EEEEECCTTCSSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred eeechhhccc-CeEEecccCCCCCCcCCCeeEEEECCchHhC-CHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 1 124 9999999988544 3789999994 44444 33334568888899999999987543
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=5.2e-09 Score=110.41 Aligned_cols=99 Identities=20% Similarity=0.270 Sum_probs=79.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++.. ++ .+ .+|+|+|.|+.++ .++++.+.|++.++ ++++++|+.++. ++||+|++
T Consensus 195 ~~~~VLDlg~G~G~~~l~----a~-~~--~~V~~vD~s~~ai~~a~~n~~~n~l~~~-v~~~~~D~~~~~--~~fD~Vi~ 264 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA----CK-NA--KKIYAIDINPHAIELLKKNIKLNKLEHK-IIPILSDVREVD--VKGNRVIM 264 (336)
T ss_dssp TTCEEEETTCTTSHHHHH----TT-TS--SEEEEEESCHHHHHHHHHHHHHTTCTTT-EEEEESCGGGCC--CCEEEEEE
T ss_pred CCCEEEEccCccCHHHHh----cc-CC--CEEEEEECCHHHHHHHHHHHHHcCCCCc-EEEEECChHHhc--CCCcEEEE
Confidence 467999999999999953 33 22 5999999999887 77888888998665 999999999986 78999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEecccee
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTS 456 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~ 456 (626)
++..+ ..++++.+.+.|+|||+++-..+.-
T Consensus 265 dpP~~------~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 265 NLPKF------AHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp CCTTT------GGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred CCcHh------HHHHHHHHHHHcCCCCEEEEEEeec
Confidence 76532 2367888889999999887654443
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-08 Score=107.10 Aligned_cols=109 Identities=12% Similarity=0.044 Sum_probs=79.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIV 419 (626)
++.+|||+|||+|..+..++.. .+...+|+|+|.++.++ .++++.++++.. ||+++++|++++.. +++||+|+
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~---~~~~~~v~avD~s~~~l~~a~~~~~~~g~~--~v~~~~~D~~~~~~~~~~fD~Il 192 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQL---MRNDGVIYAFDVDENRLRETRLNLSRLGVL--NVILFHSSSLHIGELNVEFDKIL 192 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHH---TTTCSEEEEECSCHHHHHHHHHHHHHHTCC--SEEEESSCGGGGGGGCCCEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHH---hCCCCEEEEEcCCHHHHHHHHHHHHHhCCC--eEEEEECChhhcccccccCCEEE
Confidence 5679999999999998654433 22225999999999876 777777778875 59999999998753 56899999
Q ss_pred eccc----cccCCCCC----------------cHHHHHHHHHhcccCcEEEeccce
Q psy17734 420 SELL----GSFGDNEL----------------SPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 420 SEll----gsfg~~El----------------~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
++.. |.+..... ..++|+.+.++|||||.++-..++
T Consensus 193 ~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 193 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 9754 21211110 036788889999999999865443
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-08 Score=106.62 Aligned_cols=110 Identities=17% Similarity=0.268 Sum_probs=78.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--cC-CCCCcEEEEEeccccc-C-CCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--EQ-WAQSDVTIVSEDMRTW-N-APEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--n~-~~~~nV~vi~~D~~~~-~-~p~k~ 415 (626)
+..+|||||||+|.++..+ ++..+. .+|++||.++.++ .+++.... .+ +.+.+|+++.+|++++ . .+++|
T Consensus 77 ~~~~VLdiG~G~G~~~~~l---~~~~~~-~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 152 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREV---LKHPTV-EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERY 152 (314)
T ss_dssp CCCEEEEEECTTSHHHHHH---TTSTTC-CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCE
T ss_pred CCCeEEEEcCCcCHHHHHH---HhcCCC-CEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCc
Confidence 3479999999999998643 332222 4999999999877 66665433 22 3222499999999885 2 35789
Q ss_pred cEEEecccccc---CCCCC--cHHHHHHHHHhcccCcEEEeccce
Q psy17734 416 DIMVSELLGSF---GDNEL--SPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 416 DiIVSEllgsf---g~~El--~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
|+|++...... +..+. ..+++..+.+.|||||+++-+...
T Consensus 153 D~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 197 (314)
T 1uir_A 153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM 197 (314)
T ss_dssp EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred cEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence 99999875443 21111 368899999999999999876544
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.84 E-value=8.7e-09 Score=105.09 Aligned_cols=99 Identities=14% Similarity=0.168 Sum_probs=74.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc-CCCCCcEEEEEecccccCCCCCccEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE-QWAQSDVTIVSEDMRTWNAPEKADIM 418 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n-~~~~~nV~vi~~D~~~~~~p~k~DiI 418 (626)
.++.+|||+|||+|.++..+++... .+ .+|+++|.++.++ .++++...+ +. + +++++.+|+.+...+++||+|
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~-~~--~~v~~vD~s~~~~~~a~~~~~~~~g~-~-~v~~~~~d~~~~~~~~~fD~V 183 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALN-GK--GTLTVVERDEDNLKKAMDNLSEFYDI-G-NVRTSRSDIADFISDQMYDAV 183 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHT-TS--SEEEEECSCHHHHHHHHHHHHTTSCC-T-TEEEECSCTTTCCCSCCEEEE
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcC-CC--CEEEEEECCHHHHHHHHHHHHhcCCC-C-cEEEEECchhccCcCCCccEE
Confidence 3567999999999999875554321 12 5999999999877 666666655 64 3 599999999985444689999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
++.+. ...++++.+.+.|||||+++-
T Consensus 184 i~~~~-------~~~~~l~~~~~~LkpgG~l~i 209 (275)
T 1yb2_A 184 IADIP-------DPWNHVQKIASMMKPGSVATF 209 (275)
T ss_dssp EECCS-------CGGGSHHHHHHTEEEEEEEEE
T ss_pred EEcCc-------CHHHHHHHHHHHcCCCCEEEE
Confidence 98432 234688999999999998774
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-08 Score=105.72 Aligned_cols=98 Identities=17% Similarity=0.074 Sum_probs=72.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIV 419 (626)
++.+|||+|||+|.++..+++.+. ...+|+|+|.++.++ .++++...++.. ||+++.+|.++... .++||+|+
T Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~~---~~~~v~gvD~s~~~~~~a~~~~~~~g~~--~v~~~~~d~~~~~~~~~~fD~Iv 149 (317)
T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMSRVVG---EKGLVVSVEYSRKICEIAKRNVERLGIE--NVIFVCGDGYYGVPEFSPYDVIF 149 (317)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHC---TTCEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEESCGGGCCGGGCCEEEEE
T ss_pred CcCEEEEecCCchHHHHHHHHhcC---CCCEEEEEECCHHHHHHHHHHHHHcCCC--CeEEEECChhhccccCCCeEEEE
Confidence 567999999999999865554432 124799999999877 677777777775 59999999998533 47899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+..+- +..+ +.+.+.|||||+++-.
T Consensus 150 ~~~~~-----~~~~---~~~~~~LkpgG~lvi~ 174 (317)
T 1dl5_A 150 VTVGV-----DEVP---ETWFTQLKEGGRVIVP 174 (317)
T ss_dssp ECSBB-----SCCC---HHHHHHEEEEEEEEEE
T ss_pred EcCCH-----HHHH---HHHHHhcCCCcEEEEE
Confidence 95432 1222 4567799999997754
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.3e-09 Score=104.96 Aligned_cols=95 Identities=14% Similarity=0.197 Sum_probs=72.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++. .+ .+|+|+|.++.++ .+.+.. . +++++.+|+++++.+++||+|++
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~----~~--~~v~gvD~s~~~~~~a~~~~------~-~~~~~~~d~~~~~~~~~fD~v~~ 123 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQ----SG--AEVLGTDNAATMIEKARQNY------P-HLHFDVADARNFRVDKPLDAVFS 123 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHH----TT--CEEEEEESCHHHHHHHHHHC------T-TSCEEECCTTTCCCSSCEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHh----CC--CeEEEEECCHHHHHHHHhhC------C-CCEEEECChhhCCcCCCcCEEEE
Confidence 567999999999999865433 23 4999999999877 333321 3 49999999999887789999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
...-.+. ...+.++..+.+.|||||.++-
T Consensus 124 ~~~l~~~--~d~~~~l~~~~~~LkpgG~l~~ 152 (279)
T 3ccf_A 124 NAMLHWV--KEPEAAIASIHQALKSGGRFVA 152 (279)
T ss_dssp ESCGGGC--SCHHHHHHHHHHHEEEEEEEEE
T ss_pred cchhhhC--cCHHHHHHHHHHhcCCCcEEEE
Confidence 5432221 2346789999999999998774
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.84 E-value=6e-09 Score=102.91 Aligned_cols=89 Identities=13% Similarity=0.112 Sum_probs=67.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccc-ccCC--CCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMR-TWNA--PEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~-~~~~--p~k~DiI 418 (626)
++.+|||+|||+|.++..+ ++. + .+|+|+|.++.++...+.. .. +++++.+|+. .++. +++||+|
T Consensus 48 ~~~~vLDiGcG~G~~~~~l---~~~-~--~~v~~vD~s~~~~~~a~~~-----~~-~~~~~~~d~~~~~~~~~~~~fD~v 115 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARF---GPQ-A--ARWAAYDFSPELLKLARAN-----AP-HADVYEWNGKGELPAGLGAPFGLI 115 (226)
T ss_dssp TTCEEEEESCTTSHHHHHH---GGG-S--SEEEEEESCHHHHHHHHHH-----CT-TSEEEECCSCSSCCTTCCCCEEEE
T ss_pred CCCeEEEeCCCCCHHHHHH---HHc-C--CEEEEEECCHHHHHHHHHh-----CC-CceEEEcchhhccCCcCCCCEEEE
Confidence 4679999999999998543 332 4 4999999999877333322 23 4999999994 4554 3689999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
++. .....++..+.+.|||||.++
T Consensus 116 ~~~--------~~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 116 VSR--------RGPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp EEE--------SCCSGGGGGHHHHEEEEEEEE
T ss_pred EeC--------CCHHHHHHHHHHHcCCCcEEE
Confidence 985 234567888899999999999
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.1e-09 Score=107.66 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=77.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
+..+|||+|||+|.++..+++.. .+ .+|+++|.+ .++ .+++.....++.++ |+++.+|+.+.+.+..+|+|++
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~--p~--~~~~~~D~~-~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~D~v~~ 238 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHN--PN--AEIFGVDWA-SVLEVAKENARIQGVASR-YHTIAGSAFEVDYGNDYDLVLL 238 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHC--TT--CEEEEEECH-HHHHHHHHHHHHHTCGGG-EEEEESCTTTSCCCSCEEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHC--CC--CeEEEEecH-HHHHHHHHHHHhcCCCcc-eEEEecccccCCCCCCCcEEEE
Confidence 56799999999999986544332 12 599999999 555 77777777787766 9999999998777777999988
Q ss_pred -ccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 421 -ELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 -Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
..+.++ ..+....++..+.+.|||||.++-
T Consensus 239 ~~~l~~~-~~~~~~~~l~~~~~~L~pgG~l~i 269 (335)
T 2r3s_A 239 PNFLHHF-DVATCEQLLRKIKTALAVEGKVIV 269 (335)
T ss_dssp ESCGGGS-CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cchhccC-CHHHHHHHHHHHHHhCCCCcEEEE
Confidence 334333 222235688899999999997653
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.3e-08 Score=103.84 Aligned_cols=100 Identities=17% Similarity=0.121 Sum_probs=76.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++++ .+...+|+++|.++.++ .++++...+++.++ ++++.+|+.+.-.+++||+|++
T Consensus 112 ~~~~VLDiG~G~G~~~~~la~~---~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~D~V~~ 187 (277)
T 1o54_A 112 EGDRIIDTGVGSGAMCAVLARA---VGSSGKVFAYEKREEFAKLAESNLTKWGLIER-VTIKVRDISEGFDEKDVDALFL 187 (277)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH---TTTTCEEEEECCCHHHHHHHHHHHHHTTCGGG-EEEECCCGGGCCSCCSEEEEEE
T ss_pred CCCEEEEECCcCCHHHHHHHHH---hCCCcEEEEEECCHHHHHHHHHHHHHcCCCCC-EEEEECCHHHcccCCccCEEEE
Confidence 5679999999999998655443 22225999999999877 77777777777555 9999999998743468999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+. ...+++..+.+.|||||.++-.
T Consensus 188 ~~~-------~~~~~l~~~~~~L~pgG~l~~~ 212 (277)
T 1o54_A 188 DVP-------DPWNYIDKCWEALKGGGRFATV 212 (277)
T ss_dssp CCS-------CGGGTHHHHHHHEEEEEEEEEE
T ss_pred CCc-------CHHHHHHHHHHHcCCCCEEEEE
Confidence 542 2236788899999999987743
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.4e-09 Score=102.65 Aligned_cols=99 Identities=13% Similarity=0.145 Sum_probs=73.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
++.+|||+|||+|.++..++... .+ .+|+|+|.++.++...+.. .. +++++.+|+.++..+++||+|++.
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~~--~~--~~v~~~D~s~~~~~~a~~~-----~~-~~~~~~~d~~~~~~~~~fD~v~~~ 102 (259)
T 2p35_A 33 RVLNGYDLGCGPGNSTELLTDRY--GV--NVITGIDSDDDMLEKAADR-----LP-NTNFGKADLATWKPAQKADLLYAN 102 (259)
T ss_dssp CCSSEEEETCTTTHHHHHHHHHH--CT--TSEEEEESCHHHHHHHHHH-----ST-TSEEEECCTTTCCCSSCEEEEEEE
T ss_pred CCCEEEEecCcCCHHHHHHHHhC--CC--CEEEEEECCHHHHHHHHHh-----CC-CcEEEECChhhcCccCCcCEEEEe
Confidence 45789999999999987554432 12 4999999999877333322 23 499999999998755789999995
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..-.+. .....++..+.+.|||||.++-.
T Consensus 103 ~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~ 131 (259)
T 2p35_A 103 AVFQWV--PDHLAVLSQLMDQLESGGVLAVQ 131 (259)
T ss_dssp SCGGGS--TTHHHHHHHHGGGEEEEEEEEEE
T ss_pred CchhhC--CCHHHHHHHHHHhcCCCeEEEEE
Confidence 432222 23467889999999999988754
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-08 Score=98.68 Aligned_cols=93 Identities=22% Similarity=0.208 Sum_probs=68.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..+ +. .+|+|+|.++.++ .+++.. . +++++.+|+.+++.+ ++||+|+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-------~~-~~v~~vD~s~~~~~~a~~~~------~-~~~~~~~d~~~~~~~~~~fD~v~ 100 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-------PY-PQKVGVEPSEAMLAVGRRRA------P-EATWVRAWGEALPFPGESFDVVL 100 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-------CC-SEEEEECCCHHHHHHHHHHC------T-TSEEECCCTTSCCSCSSCEEEEE
T ss_pred CCCeEEEECCCCCHhHHhC-------CC-CeEEEEeCCHHHHHHHHHhC------C-CcEEEEcccccCCCCCCcEEEEE
Confidence 4679999999999987532 21 2999999999876 333332 3 499999999998764 6899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+...-.. .+...+++..+.+.|||||.++-
T Consensus 101 ~~~~l~~--~~~~~~~l~~~~~~L~pgG~l~i 130 (211)
T 2gs9_A 101 LFTTLEF--VEDVERVLLEARRVLRPGGALVV 130 (211)
T ss_dssp EESCTTT--CSCHHHHHHHHHHHEEEEEEEEE
T ss_pred EcChhhh--cCCHHHHHHHHHHHcCCCCEEEE
Confidence 8432111 12346789999999999998764
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-08 Score=102.65 Aligned_cols=95 Identities=14% Similarity=0.155 Sum_probs=68.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..++ +. + .+|+|+|.++.++ .+++... . . ++.+|+.+++.+ ++||+|+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~---~~-~--~~v~gvD~s~~~l~~a~~~~~------~-~-~~~~d~~~~~~~~~~fD~v~ 119 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQ---ER-G--FEVVLVDPSKEMLEVAREKGV------K-N-VVEAKAEDLPFPSGAFEAVL 119 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHH---TT-T--CEEEEEESCHHHHHHHHHHTC------S-C-EEECCTTSCCSCTTCEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHH---Hc-C--CeEEEEeCCHHHHHHHHhhcC------C-C-EEECcHHHCCCCCCCEEEEE
Confidence 45799999999999986433 22 3 4999999999877 4433321 2 2 788999988764 6899999
Q ss_pred ecc-ccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SEL-LGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEl-lgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.. +.++.. ....++..+.+.|||||.++-.
T Consensus 120 ~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~ 151 (260)
T 2avn_A 120 ALGDVLSYVE--NKDKAFSEIRRVLVPDGLLIAT 151 (260)
T ss_dssp ECSSHHHHCS--CHHHHHHHHHHHEEEEEEEEEE
T ss_pred Ecchhhhccc--cHHHHHHHHHHHcCCCeEEEEE
Confidence 842 322322 2567899999999999998743
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.83 E-value=7.4e-10 Score=112.35 Aligned_cols=105 Identities=17% Similarity=0.077 Sum_probs=69.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcC---------------------------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQ--------------------------- 393 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~--------------------------- 393 (626)
++.+|||||||+|.++.. +++ .+. .+|+|+|.++.++ .+++.++.+.
T Consensus 55 ~g~~vLDiGCG~G~~~~~---~~~-~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVL---AAC-DSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE 129 (263)
T ss_dssp CEEEEEESSCTTCCGGGT---TGG-GTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCceEEEeCCCccHHHHH---HHH-hhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence 567999999999988742 222 232 3899999999887 4544433221
Q ss_pred -CCCCcEE-EEEecccccCC-----CCCccEEEecccccc-CCC-CCcHHHHHHHHHhcccCcEEEec
Q psy17734 394 -WAQSDVT-IVSEDMRTWNA-----PEKADIMVSELLGSF-GDN-ELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 394 -~~~~nV~-vi~~D~~~~~~-----p~k~DiIVSEllgsf-g~~-El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
... +|+ ++.+|+.+... .++||+|++-.+-+. ... +....++..+.++|||||.++-.
T Consensus 130 ~~~~-~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~ 196 (263)
T 2a14_A 130 KLRA-AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT 196 (263)
T ss_dssp HHHH-HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHh-hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 011 255 99999988421 368999999543222 111 22346788888999999998865
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-08 Score=106.05 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=72.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcC------CCCCcEEEEEecccccC----
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQ------WAQSDVTIVSEDMRTWN---- 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~------~~~~nV~vi~~D~~~~~---- 410 (626)
++.+|||+|||+|.++..++. ..+ .+|+|+|.++.++ .+++.....+ ... +++++.+|+++..
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~---~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~ 107 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKK---GRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIF-SAEFITADSSKELLIDK 107 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHH---TTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCC-EEEEEECCTTTSCSTTT
T ss_pred CCCEEEEECCCCcHHHHHHHh---cCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccc-eEEEEEecccccchhhh
Confidence 457899999999999864433 222 4999999999877 5555443321 123 4999999999875
Q ss_pred C---CCCccEEEeccccccC--CCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 411 A---PEKADIMVSELLGSFG--DNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 411 ~---p~k~DiIVSEllgsfg--~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
. +++||+|+|...-++. +.+....++..+.+.|||||.++-
T Consensus 108 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 153 (313)
T 3bgv_A 108 FRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIG 153 (313)
T ss_dssp CSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 3 2489999985432222 112235788999999999999873
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.9e-09 Score=110.97 Aligned_cols=103 Identities=18% Similarity=0.148 Sum_probs=76.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||||||+|.++..+++... + .+|+++|. +.++ .+++....++..++ |+++.+|+.+...+. .|+|++
T Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p--~--~~~~~~D~-~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~-~D~v~~ 262 (359)
T 1x19_A 190 GVKKMIDVGGGIGDISAAMLKHFP--E--LDSTILNL-PGAIDLVNENAAEKGVADR-MRGIAVDIYKESYPE-ADAVLF 262 (359)
T ss_dssp TCCEEEEESCTTCHHHHHHHHHCT--T--CEEEEEEC-GGGHHHHHHHHHHTTCTTT-EEEEECCTTTSCCCC-CSEEEE
T ss_pred CCCEEEEECCcccHHHHHHHHHCC--C--CeEEEEec-HHHHHHHHHHHHhcCCCCC-EEEEeCccccCCCCC-CCEEEE
Confidence 567999999999999865444321 2 59999999 7665 77777777788777 999999999876544 499988
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
...-+....+....+|..+.+.|||||.++-
T Consensus 263 ~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i 293 (359)
T 1x19_A 263 CRILYSANEQLSTIMCKKAFDAMRSGGRLLI 293 (359)
T ss_dssp ESCGGGSCHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred echhccCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 4432222222245678899999999998854
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=6.3e-09 Score=107.15 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=77.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc--CCCCCcEEEEEecccccC--CCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE--QWAQSDVTIVSEDMRTWN--APEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n--~~~~~nV~vi~~D~~~~~--~p~k~D 416 (626)
++.+|||+|||+|.++..++ +..+ ..+|++||.++.++ .+++..... ++.+.+|+++.+|++++. .+++||
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~---~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 153 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELC---KYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYD 153 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHT---TCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred CCCeEEEEeCCcCHHHHHHH---HcCC-CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCce
Confidence 35799999999999986433 3222 25999999999877 555554321 122224999999998752 257899
Q ss_pred EEEeccccccCCCCCc--HHHHHHHHHhcccCcEEEeccc
Q psy17734 417 IMVSELLGSFGDNELS--PECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 417 iIVSEllgsfg~~El~--pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+|++......+..+.. .+++..+.+.|||||+++-+..
T Consensus 154 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 154 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 9999765443333222 6899999999999999986644
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5.3e-09 Score=112.41 Aligned_cols=109 Identities=11% Similarity=0.059 Sum_probs=79.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCC-CcEEEEEecccccCC-----CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQ-SDVTIVSEDMRTWNA-----PEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~-~nV~vi~~D~~~~~~-----p~k 414 (626)
++.+|||+|||+|.++..++.. |+ .+|+|||.|+.++ .++++.+.|++.+ + ++++++|+.++.. .++
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~----ga-~~V~~vD~s~~al~~A~~N~~~n~~~~~~-v~~~~~D~~~~l~~~~~~~~~ 285 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMG----GA-MATTSVDLAKRSRALSLAHFEANHLDMAN-HQLVVMDVFDYFKYARRHHLT 285 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHT----TB-SEEEEEESCTTHHHHHHHHHHHTTCCCTT-EEEEESCHHHHHHHHHHTTCC
T ss_pred CCCeEEEEeeccCHHHHHHHHC----CC-CEEEEEECCHHHHHHHHHHHHHcCCCccc-eEEEECCHHHHHHHHHHhCCC
Confidence 4579999999999999654332 32 3999999999887 7888888899866 5 9999999987421 358
Q ss_pred ccEEEecccccc---CCCCC----cHHHHHHHHHhcccCcEEEecccee
Q psy17734 415 ADIMVSELLGSF---GDNEL----SPECLYAAQKYLKEDGISIPYNYTS 456 (626)
Q Consensus 415 ~DiIVSEllgsf---g~~El----~pe~L~~~~r~LkpgGi~IP~~~t~ 456 (626)
||+||+++.-+. +..+. ..+++..+.+.|+|||+++-+....
T Consensus 286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999999876321 11122 1345667789999999988765543
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.9e-09 Score=104.01 Aligned_cols=101 Identities=19% Similarity=0.110 Sum_probs=59.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-----CCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-----EKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-----~k~ 415 (626)
++.+|||+|||+|.++..++... ...+|+|+|.++.++ .++++...++. + ++++++|+.+.... ++|
T Consensus 30 ~~~~vLDiG~G~G~~~~~l~~~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~--~-~~~~~~d~~~~~~~~~~~~~~f 102 (215)
T 4dzr_A 30 SGTRVIDVGTGSGCIAVSIALAC----PGVSVTAVDLSMDALAVARRNAERFGA--V-VDWAAADGIEWLIERAERGRPW 102 (215)
T ss_dssp TTEEEEEEESSBCHHHHHHHHHC----TTEEEEEEECC----------------------CCHHHHHHHHHHHHHTTCCB
T ss_pred CCCEEEEecCCHhHHHHHHHHhC----CCCeEEEEECCHHHHHHHHHHHHHhCC--c-eEEEEcchHhhhhhhhhccCcc
Confidence 56799999999999986544432 125999999999877 66666666665 4 99999999884332 789
Q ss_pred cEEEeccccccCCC----------------------CCc---HHHHHHHHHhcccCcE-EE
Q psy17734 416 DIMVSELLGSFGDN----------------------ELS---PECLYAAQKYLKEDGI-SI 450 (626)
Q Consensus 416 DiIVSEllgsfg~~----------------------El~---pe~L~~~~r~LkpgGi-~I 450 (626)
|+|++.+.- +... ... ..++..+.+.|||||+ ++
T Consensus 103 D~i~~npp~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 162 (215)
T 4dzr_A 103 HAIVSNPPY-IPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVF 162 (215)
T ss_dssp SEEEECCCC-CC------------------------CTTHHHHHHHTCCGGGBCSSSEEEE
T ss_pred cEEEECCCC-CCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 999996531 1100 001 4456667789999999 54
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-08 Score=106.41 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=76.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--C-CCCccEEE
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--A-PEKADIMV 419 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~-p~k~DiIV 419 (626)
.+|||||||+|.++..+++.. .+ .+|++||+++.++ .+++....+ ...+ |+++.+|.+++- . .++||+||
T Consensus 91 ~rVLdIG~G~G~la~~la~~~--p~--~~v~~VEidp~vi~~Ar~~~~~~-~~~r-v~v~~~Da~~~l~~~~~~~fDvIi 164 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVY--PQ--SRNTVVELDAELARLSREWFDIP-RAPR-VKIRVDDARMVAESFTPASRDVII 164 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHS--TT--CEEEEEESCHHHHHHHHHHSCCC-CTTT-EEEEESCHHHHHHTCCTTCEEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHC--CC--cEEEEEECCHHHHHHHHHhcccc-CCCc-eEEEECcHHHHHhhccCCCCCEEE
Confidence 489999999999987544422 23 5999999999877 555554222 2345 999999998862 2 37899999
Q ss_pred eccccccCCCCC--cHHHHHHHHHhcccCcEEEeccc
Q psy17734 420 SELLGSFGDNEL--SPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 420 SEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
++.....+..+. ..+++..+.+.|||||+++-+..
T Consensus 165 ~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 165 RDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp ECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 987544332222 37899999999999999986543
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=101.11 Aligned_cols=105 Identities=13% Similarity=0.133 Sum_probs=78.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc----CC-C--C
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW----NA-P--E 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~----~~-p--~ 413 (626)
++.+|||+|||+|..+..++.+ .+...+|+++|.++.+. .+++....+++.++ |+++.+|+.+. .. . +
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~---~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~-i~~~~~d~~~~l~~l~~~~~~~ 147 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQ---LPPDGQIIACDQDPNATAIAKKYWQKAGVAEK-ISLRLGPALATLEQLTQGKPLP 147 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTT---SCTTCEEEEEESCHHHHHHHHHHHHHHTCGGG-EEEEESCHHHHHHHHHTSSSCC
T ss_pred CCCEEEEecCCCCHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCc-EEEEEcCHHHHHHHHHhcCCCC
Confidence 3468999999999998654433 22125999999999876 77777777888766 99999998653 11 1 6
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccce
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
+||+|++... .+..+.+++.+.+.|||||+++-....
T Consensus 148 ~fD~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 148 EFDLIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp CEEEEEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred CcCEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 8999997532 233467889999999999999876544
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.81 E-value=3.1e-08 Score=95.84 Aligned_cols=96 Identities=21% Similarity=0.168 Sum_probs=70.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..+++. +. .+|+|+|.++.++ .++++...++. + ++++++|+.+++ .+||+|++
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~----~~-~~v~~vD~~~~~~~~a~~~~~~~~~--~-~~~~~~d~~~~~--~~~D~v~~ 118 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLL----GA-KEVICVEVDKEAVDVLIENLGEFKG--K-FKVFIGDVSEFN--SRVDIVIM 118 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT----TC-SEEEEEESCHHHHHHHHHHTGGGTT--S-EEEEESCGGGCC--CCCSEEEE
T ss_pred CcCEEEEeeCCCCHHHHHHHHc----CC-CEEEEEECCHHHHHHHHHHHHHcCC--C-EEEEECchHHcC--CCCCEEEE
Confidence 5679999999999998643332 32 3899999999887 66666666666 4 999999999974 58999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEE
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGIS 449 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~ 449 (626)
++.-..........+++.+.+.| ||++
T Consensus 119 ~~p~~~~~~~~~~~~l~~~~~~l--~~~~ 145 (207)
T 1wy7_A 119 NPPFGSQRKHADRPFLLKAFEIS--DVVY 145 (207)
T ss_dssp CCCCSSSSTTTTHHHHHHHHHHC--SEEE
T ss_pred cCCCccccCCchHHHHHHHHHhc--CcEE
Confidence 87632222233456788887777 5543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-08 Score=100.88 Aligned_cols=104 Identities=11% Similarity=0.077 Sum_probs=71.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH------cCCCCCcEEEEEecccc-cC--C
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE------EQWAQSDVTIVSEDMRT-WN--A 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~------n~~~~~nV~vi~~D~~~-~~--~ 411 (626)
++.+|||||||+|.++.. .++... ...|+|||.++.++ .++++++. ++.. ||+++.+|+.+ +. +
T Consensus 46 ~~~~vLDiGcG~G~~~~~---la~~~p-~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~--nv~~~~~d~~~~l~~~~ 119 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVE---LSPLFP-DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQ--NIACLRSNAMKHLPNFF 119 (235)
T ss_dssp CCEEEEEETCTTCHHHHH---HGGGST-TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCT--TEEEEECCTTTCHHHHC
T ss_pred CCCeEEEEccCCcHHHHH---HHHHCC-CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCC--eEEEEECcHHHhhhhhC
Confidence 456899999999999853 333322 25999999999877 55554432 3443 69999999987 44 2
Q ss_pred -CCCccEEEeccccccCC-----C-CCcHHHHHHHHHhcccCcEEEe
Q psy17734 412 -PEKADIMVSELLGSFGD-----N-ELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 412 -p~k~DiIVSEllgsfg~-----~-El~pe~L~~~~r~LkpgGi~IP 451 (626)
++.+|.|+......+.. . ...+.++..+.+.|||||.++-
T Consensus 120 ~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~ 166 (235)
T 3ckk_A 120 YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYT 166 (235)
T ss_dssp CTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEE
T ss_pred CCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEE
Confidence 47899998633221110 0 0126789999999999999863
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.2e-08 Score=100.00 Aligned_cols=98 Identities=17% Similarity=0.103 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc-CCCCCcEEEEEecccccCCC-CCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE-QWAQSDVTIVSEDMRTWNAP-EKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n-~~~~~nV~vi~~D~~~~~~p-~k~DiI 418 (626)
++.+|||+|||+|.++..++++. +...+|+++|.++.++ .++++...+ + .+ +|+++.+|+.+...+ +++|+|
T Consensus 96 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~-~v~~~~~d~~~~~~~~~~~D~v 170 (258)
T 2pwy_A 96 PGMRVLEAGTGSGGLTLFLARAV---GEKGLVESYEARPHHLAQAERNVRAFWQ-VE-NVRFHLGKLEEAELEEAAYDGV 170 (258)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHH---CTTSEEEEEESCHHHHHHHHHHHHHHCC-CC-CEEEEESCGGGCCCCTTCEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHh---CCCCEEEEEeCCHHHHHHHHHHHHHhcC-CC-CEEEEECchhhcCCCCCCcCEE
Confidence 56799999999999986554442 2125999999999876 666666666 6 34 499999999988544 689999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
++.+. ...+++..+.+.|||||.++-
T Consensus 171 ~~~~~-------~~~~~l~~~~~~L~~gG~l~~ 196 (258)
T 2pwy_A 171 ALDLM-------EPWKVLEKAALALKPDRFLVA 196 (258)
T ss_dssp EEESS-------CGGGGHHHHHHHEEEEEEEEE
T ss_pred EECCc-------CHHHHHHHHHHhCCCCCEEEE
Confidence 98432 224688999999999998773
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.81 E-value=2e-08 Score=100.61 Aligned_cols=104 Identities=13% Similarity=0.077 Sum_probs=73.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc--------CCCCCcEEEEEecccc-cC-
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE--------QWAQSDVTIVSEDMRT-WN- 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n--------~~~~~nV~vi~~D~~~-~~- 410 (626)
++.+|||+|||+|.++..++... ...+|+|||.++.++ .+.+++..+ +.. ||+++.+|+.+ +.
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~----~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~--nv~~~~~D~~~~l~~ 122 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAF----PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ--NINVLRGNAMKFLPN 122 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHS----TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT--TEEEEECCTTSCGGG
T ss_pred CCCEEEEEcCCCCHHHHHHHHhC----CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC--cEEEEeccHHHHHHH
Confidence 45789999999999986544332 225999999999877 666665554 554 59999999987 43
Q ss_pred -C-CCCccEEEeccccccCC-----CC-CcHHHHHHHHHhcccCcEEEe
Q psy17734 411 -A-PEKADIMVSELLGSFGD-----NE-LSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 411 -~-p~k~DiIVSEllgsfg~-----~E-l~pe~L~~~~r~LkpgGi~IP 451 (626)
. ...+|.|+......+.. .. ..++++..+.+.|||||.++-
T Consensus 123 ~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~ 171 (246)
T 2vdv_E 123 FFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYT 171 (246)
T ss_dssp TSCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEE
T ss_pred hccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEE
Confidence 2 36788887533222110 00 125789999999999999774
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.5e-08 Score=102.46 Aligned_cols=106 Identities=8% Similarity=-0.039 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHH------H-HHHHHHHHHcCCCCCcEEEEEec-cc--ccCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMS------A-VVGLKYKKEEQWAQSDVTIVSED-MR--TWNA 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~------a-~~a~~~~~~n~~~~~nV~vi~~D-~~--~~~~ 411 (626)
++.+|||||||+|.++..++.. .|...+|+|+|.++. + ..+++....+++.++ |+++.+| .+ .++.
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~---~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~ 118 (275)
T 3bkx_A 43 PGEKILEIGCGQGDLSAVLADQ---VGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDR-LTVHFNTNLSDDLGPI 118 (275)
T ss_dssp TTCEEEEESCTTSHHHHHHHHH---HCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGG-EEEECSCCTTTCCGGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHH---hCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCc-eEEEECChhhhccCCC
Confidence 5679999999999998654433 332359999999985 4 467777666776555 9999998 43 3332
Q ss_pred -CCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 412 -PEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 412 -p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
+++||+|++..+-.... ....++..+.++++|||.++-..
T Consensus 119 ~~~~fD~v~~~~~l~~~~--~~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 119 ADQHFDRVVLAHSLWYFA--SANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp TTCCCSEEEEESCGGGSS--CHHHHHHHHHHHTTTCSEEEEEE
T ss_pred CCCCEEEEEEccchhhCC--CHHHHHHHHHHHhCCCCEEEEEE
Confidence 36899999844322211 12345566667777899887543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-08 Score=99.85 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=71.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVS 420 (626)
++.+|||+|||+|.++..++.. +. .+|+|+|.++.++...+.... .. +|+++.+|+.++..+ ++||+|++
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~----~~-~~v~~vD~s~~~~~~a~~~~~---~~-~~~~~~~d~~~~~~~~~~fD~v~~ 113 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEH----GA-SYVLGLDLSEKMLARARAAGP---DT-GITYERADLDKLHLPQDSFDLAYS 113 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT----TC-SEEEEEESCHHHHHHHHHTSC---SS-SEEEEECCGGGCCCCTTCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHHC----CC-CeEEEEcCCHHHHHHHHHhcc---cC-CceEEEcChhhccCCCCCceEEEE
Confidence 5679999999999998643332 32 399999999987733332111 12 499999999998754 68999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
...-.. .+....++..+.+.|||||.++-
T Consensus 114 ~~~l~~--~~~~~~~l~~~~~~L~pgG~l~~ 142 (243)
T 3bkw_A 114 SLALHY--VEDVARLFRTVHQALSPGGHFVF 142 (243)
T ss_dssp ESCGGG--CSCHHHHHHHHHHHEEEEEEEEE
T ss_pred eccccc--cchHHHHHHHHHHhcCcCcEEEE
Confidence 542211 12346789999999999998874
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.79 E-value=7.6e-09 Score=111.42 Aligned_cols=107 Identities=17% Similarity=0.194 Sum_probs=80.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCC-CCCcEEEEEecccccCC-----CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQW-AQSDVTIVSEDMRTWNA-----PEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~-~~~nV~vi~~D~~~~~~-----p~k 414 (626)
++.+|||+|||+|.++..++ +. |+ .+|+|||.++.++ .++++...|++ .++ ++++.+|+.++.. .++
T Consensus 220 ~~~~VLDl~cG~G~~sl~la---~~-g~-~~V~~vD~s~~al~~a~~n~~~ngl~~~~-v~~~~~D~~~~~~~~~~~~~~ 293 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSAL---MG-GC-SQVVSVDTSQEALDIARQNVELNKLDLSK-AEFVRDDVFKLLRTYRDRGEK 293 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHH---HT-TC-SEEEEEESCHHHHHHHHHHHHHTTCCGGG-EEEEESCHHHHHHHHHHTTCC
T ss_pred CCCeEEEeeccCCHHHHHHH---HC-CC-CEEEEEECCHHHHHHHHHHHHHcCCCccc-eEEEECCHHHHHHHHHhcCCC
Confidence 45799999999999996443 32 22 4999999999887 77888888888 555 9999999988632 368
Q ss_pred ccEEEeccccccCCC--------CCcHHHHHHHHHhcccCcEEEeccce
Q psy17734 415 ADIMVSELLGSFGDN--------ELSPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 415 ~DiIVSEllgsfg~~--------El~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
||+||+++.- +... +...+++..+.+.|+|||+++-+.++
T Consensus 294 fD~Ii~dpP~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 294 FDVIVMDPPK-FVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp EEEEEECCSS-TTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCEEEECCCC-CCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9999998752 2211 22356778888999999998865443
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.1e-08 Score=106.10 Aligned_cols=105 Identities=11% Similarity=0.057 Sum_probs=78.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..++..+ +...+|+|+|.++.++ .++++...++.. . |+++++|++++..+ ..+|+||
T Consensus 203 ~~~~vLD~gcGsG~~~ie~a~~~---~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~-i~~~~~D~~~~~~~~~~~D~Ii 277 (354)
T 3tma_A 203 PGMRVLDPFTGSGTIALEAASTL---GPTSPVYAGDLDEKRLGLAREAALASGLS-W-IRFLRADARHLPRFFPEVDRIL 277 (354)
T ss_dssp TTCCEEESSCTTSHHHHHHHHHH---CTTSCEEEEESCHHHHHHHHHHHHHTTCT-T-CEEEECCGGGGGGTCCCCSEEE
T ss_pred CCCEEEeCCCCcCHHHHHHHHhh---CCCceEEEEECCHHHHHHHHHHHHHcCCC-c-eEEEeCChhhCccccCCCCEEE
Confidence 45789999999999986555444 1225999999999887 788888888886 4 99999999998754 5689999
Q ss_pred eccccccCCCCC------cHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNEL------SPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El------~pe~L~~~~r~LkpgGi~IP 451 (626)
+++.-..-..+. ...+++.+.+.|||||.++-
T Consensus 278 ~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i 315 (354)
T 3tma_A 278 ANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVAL 315 (354)
T ss_dssp ECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEE
T ss_pred ECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 987521111111 14577788899999998763
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=6.3e-09 Score=111.57 Aligned_cols=105 Identities=18% Similarity=0.116 Sum_probs=80.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-----CCCcc
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-----PEKAD 416 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-----p~k~D 416 (626)
+.+|||+|||+|.++..++.. + .+|+|+|.++.++ .++++...|+.. |++++.+|+.++.. .++||
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~----~--~~v~~vD~s~~~~~~a~~n~~~n~~~--~~~~~~~d~~~~~~~~~~~~~~fD 281 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG----F--REVVAVDSSAEALRRAEENARLNGLG--NVRVLEANAFDLLRRLEKEGERFD 281 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH----E--EEEEEEESCHHHHHHHHHHHHHTTCT--TEEEEESCHHHHHHHHHHTTCCEE
T ss_pred CCeEEEeeeccCHHHHHHHHh----C--CEEEEEECCHHHHHHHHHHHHHcCCC--CceEEECCHHHHHHHHHhcCCCee
Confidence 568999999999999755443 2 4999999999887 778888888886 59999999988632 46899
Q ss_pred EEEeccccccCCCC-C-------cHHHHHHHHHhcccCcEEEecccee
Q psy17734 417 IMVSELLGSFGDNE-L-------SPECLYAAQKYLKEDGISIPYNYTS 456 (626)
Q Consensus 417 iIVSEllgsfg~~E-l-------~pe~L~~~~r~LkpgGi~IP~~~t~ 456 (626)
+|++++.- |+... . ..+++..+.+.|+|||+++-..++.
T Consensus 282 ~Ii~dpP~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 282 LVVLDPPA-FAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp EEEECCCC-SCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EEEECCCC-CCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 99998763 33222 1 2346677889999999988765543
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.4e-08 Score=96.18 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=70.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIV 419 (626)
++.+|||+|||+|.++..+++.. +...+|+++|.++.+. .+++.....+.. +++++.+|+.+... .++||+|+
T Consensus 77 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~fD~v~ 151 (215)
T 2yxe_A 77 PGMKVLEIGTGCGYHAAVTAEIV---GEDGLVVSIERIPELAEKAERTLRKLGYD--NVIVIVGDGTLGYEPLAPYDRIY 151 (215)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHH---CTTSEEEEEESCHHHHHHHHHHHHHHTCT--TEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHHh---CCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CeEEEECCcccCCCCCCCeeEEE
Confidence 56799999999999986555443 2224999999999876 666666666664 59999999865332 46899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+.... .. .+ +.+.+.|||||.++-
T Consensus 152 ~~~~~----~~-~~---~~~~~~L~pgG~lv~ 175 (215)
T 2yxe_A 152 TTAAG----PK-IP---EPLIRQLKDGGKLLM 175 (215)
T ss_dssp ESSBB----SS-CC---HHHHHTEEEEEEEEE
T ss_pred ECCch----HH-HH---HHHHHHcCCCcEEEE
Confidence 84321 11 12 467789999998663
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.78 E-value=4.8e-09 Score=105.20 Aligned_cols=108 Identities=15% Similarity=0.069 Sum_probs=72.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc---CCCCC--------------------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE---QWAQS-------------------- 397 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n---~~~~~-------------------- 397 (626)
++.+|||+|||+|.++..++...+..+ .+|+|+|.|+.++ .+++++..+ +..++
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~--~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSL--RQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAA 128 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGE--EEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCC--CeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhh
Confidence 457899999999999865544310112 5999999999887 666554433 32210
Q ss_pred ----cEE-------------EEEecccccC------CCCCccEEEeccc-cccCCC------CCcHHHHHHHHHhcccCc
Q psy17734 398 ----DVT-------------IVSEDMRTWN------APEKADIMVSELL-GSFGDN------ELSPECLYAAQKYLKEDG 447 (626)
Q Consensus 398 ----nV~-------------vi~~D~~~~~------~p~k~DiIVSEll-gsfg~~------El~pe~L~~~~r~LkpgG 447 (626)
+|+ ++++|+.+.. ...+||+|++.+. +.+... +....++..+.+.|||||
T Consensus 129 ~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 208 (250)
T 1o9g_A 129 QAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHA 208 (250)
T ss_dssp HHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTC
T ss_pred hhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCc
Confidence 066 9999998854 2348999999864 222211 112467888899999999
Q ss_pred EEEe
Q psy17734 448 ISIP 451 (626)
Q Consensus 448 i~IP 451 (626)
+++-
T Consensus 209 ~l~~ 212 (250)
T 1o9g_A 209 VIAV 212 (250)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-08 Score=107.42 Aligned_cols=108 Identities=18% Similarity=0.260 Sum_probs=73.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc--CC-CCCcEEEEEeccccc-C-CCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE--QW-AQSDVTIVSEDMRTW-N-APEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n--~~-~~~nV~vi~~D~~~~-~-~p~k~ 415 (626)
+..+|||||||+|.++..++ +..+ ..+|++||.++.++ .+++..... ++ ..+ |+++.+|+.++ . .+++|
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~---~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~r-v~~~~~D~~~~l~~~~~~f 182 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVL---KHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPK-LDLFCGDGFEFLKNHKNEF 182 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHT---TCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTT-EEEECSCHHHHHHHCTTCE
T ss_pred CCCEEEEEcCCcCHHHHHHH---HcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCC-EEEEEChHHHHHHhcCCCc
Confidence 34789999999999986433 3222 25999999999877 666654322 33 345 99999999874 2 34789
Q ss_pred cEEEeccccccCCCCCc--HHHHHHHHHhcccCcEEEeccc
Q psy17734 416 DIMVSELLGSFGDNELS--PECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 416 DiIVSEllgsfg~~El~--pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
|+|++.....++..+.. .+++..+.+.|||||+++-+..
T Consensus 183 D~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~ 223 (314)
T 2b2c_A 183 DVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE 223 (314)
T ss_dssp EEEEECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred eEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECC
Confidence 99999875544333322 6789999999999999997653
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-08 Score=101.40 Aligned_cols=100 Identities=13% Similarity=0.099 Sum_probs=72.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc---CC-C-CCcc
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW---NA-P-EKAD 416 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~---~~-p-~k~D 416 (626)
+.+|||||||+|.++..+++..+..+...+|+|||.++.++ .++ +..++ |+++++|+.+. +. . .+||
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~-v~~~~gD~~~~~~l~~~~~~~fD 154 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMEN-ITLHQGDCSDLTTFEHLREMAHP 154 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTT-EEEEECCSSCSGGGGGGSSSCSS
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCc-eEEEECcchhHHHHHhhccCCCC
Confidence 46899999999999876555422122225999999998765 332 22344 99999999985 32 2 3799
Q ss_pred EEEeccccccCCCCCcHHHHHHHHH-hcccCcEEEeccc
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQK-YLKEDGISIPYNY 454 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r-~LkpgGi~IP~~~ 454 (626)
+|++... +...+.++..+.+ .|||||+++-...
T Consensus 155 ~I~~d~~-----~~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 155 LIFIDNA-----HANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EEEEESS-----CSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred EEEECCc-----hHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 9998543 2345778888887 9999999987654
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.7e-08 Score=99.10 Aligned_cols=98 Identities=19% Similarity=0.137 Sum_probs=70.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCC----CCCcEEEEEecccccCC-CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQW----AQSDVTIVSEDMRTWNA-PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~----~~~nV~vi~~D~~~~~~-p~k~ 415 (626)
++.+|||+|||+|.++..+++. .+...+|+|+|.++.++ .++++...++. .+ +|+++.+|+.+... ..+|
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~---~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~f 152 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARM---VGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSG-RVQLVVGDGRMGYAEEAPY 152 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHH---HCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTS-SEEEEESCGGGCCGGGCCE
T ss_pred CCCEEEEEcCCcCHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCC-cEEEEECCcccCcccCCCc
Confidence 5679999999999998654433 23224999999999876 66666666553 23 49999999986543 3689
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|+|++...- ..+++.+.+.|||||+++-
T Consensus 153 D~i~~~~~~--------~~~~~~~~~~LkpgG~lv~ 180 (226)
T 1i1n_A 153 DAIHVGAAA--------PVVPQALIDQLKPGGRLIL 180 (226)
T ss_dssp EEEEECSBB--------SSCCHHHHHTEEEEEEEEE
T ss_pred CEEEECCch--------HHHHHHHHHhcCCCcEEEE
Confidence 999874321 1234667789999998774
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.77 E-value=9.1e-09 Score=104.98 Aligned_cols=95 Identities=15% Similarity=0.102 Sum_probs=62.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA------PEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~------p~k 414 (626)
++.+|||+|||+|.++..++ ++ + .+|+|||.|+.++ .++++...+ +++.+..++.. +++
T Consensus 45 ~g~~VLDlGcGtG~~a~~La---~~-g--~~V~gvD~S~~ml~~Ar~~~~~~--------~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 45 PGSTVAVIGASTRFLIEKAL---ER-G--ASVTVFDFSQRMCDDLAEALADR--------CVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp TTCEEEEECTTCHHHHHHHH---HT-T--CEEEEEESCHHHHHHHHHHTSSS--------CCEEEECCTTSCCCGGGTTC
T ss_pred CcCEEEEEeCcchHHHHHHH---hc-C--CEEEEEECCHHHHHHHHHHHHhc--------cceeeeeecccccccccCCC
Confidence 56799999999999986443 32 3 4999999999887 555443222 22334443332 468
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
||+|++..+-.....+.....+..+.+.| |||+++-
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~l 146 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRA 146 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEE
Confidence 99999964322222222455788888889 9999874
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.77 E-value=3.1e-08 Score=100.51 Aligned_cols=99 Identities=19% Similarity=0.187 Sum_probs=75.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc-C-CCCCcEEEEEecccccCC-CCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE-Q-WAQSDVTIVSEDMRTWNA-PEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n-~-~~~~nV~vi~~D~~~~~~-p~k~Di 417 (626)
++.+|||+|||+|.++..++++. +...+|+++|.++.++ .++++...+ + +.+. |+++.+|+.+... +++||+
T Consensus 99 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~-v~~~~~d~~~~~~~~~~~D~ 174 (280)
T 1i9g_A 99 PGARVLEAGAGSGALTLSLLRAV---GPAGQVISYEQRADHAEHARRNVSGCYGQPPDN-WRLVVSDLADSELPDGSVDR 174 (280)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHH---CTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTT-EEEECSCGGGCCCCTTCEEE
T ss_pred CCCEEEEEcccccHHHHHHHHHh---CCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCc-EEEEECchHhcCCCCCceeE
Confidence 56799999999999986554432 2125999999999876 666666655 4 4444 9999999998865 368999
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|++.+. ...+++..+.+.|||||.++-
T Consensus 175 v~~~~~-------~~~~~l~~~~~~L~pgG~l~~ 201 (280)
T 1i9g_A 175 AVLDML-------APWEVLDAVSRLLVAGGVLMV 201 (280)
T ss_dssp EEEESS-------CGGGGHHHHHHHEEEEEEEEE
T ss_pred EEECCc-------CHHHHHHHHHHhCCCCCEEEE
Confidence 998432 223688999999999998764
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.77 E-value=6.2e-09 Score=112.04 Aligned_cols=108 Identities=16% Similarity=0.129 Sum_probs=80.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-----CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-----PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-----p~k~ 415 (626)
++.+|||+|||+|.++..++ +. |+ .+|+|||.++.++ .++++...|++.++ ++++.+|+.++.. .++|
T Consensus 217 ~~~~VLDl~~G~G~~~~~la---~~-g~-~~v~~vD~s~~~l~~a~~n~~~n~~~~~-v~~~~~d~~~~~~~~~~~~~~f 290 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAA---IA-GA-DEVIGIDKSPRAIETAKENAKLNGVEDR-MKFIVGSAFEEMEKLQKKGEKF 290 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHH---HT-TC-SEEEEEESCHHHHHHHHHHHHHTTCGGG-EEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCeEEEecCCCCHHHHHHH---HC-CC-CEEEEEeCCHHHHHHHHHHHHHcCCCcc-ceEEECCHHHHHHHHHhhCCCC
Confidence 46799999999999996443 32 33 4999999999887 77888888888655 9999999987632 4689
Q ss_pred cEEEeccccccCCCC--------CcHHHHHHHHHhcccCcEEEecccee
Q psy17734 416 DIMVSELLGSFGDNE--------LSPECLYAAQKYLKEDGISIPYNYTS 456 (626)
Q Consensus 416 DiIVSEllgsfg~~E--------l~pe~L~~~~r~LkpgGi~IP~~~t~ 456 (626)
|+|++++.- |.... ...+++..+.+.|||||+++-.+++.
T Consensus 291 D~Vi~dpP~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 291 DIVVLDPPA-FVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp EEEEECCCC-SCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CEEEECCCC-CCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 999998752 32221 12456677888999999988665543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=8.5e-09 Score=119.07 Aligned_cols=104 Identities=10% Similarity=0.114 Sum_probs=79.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCC-CCcEEEEEecccccC--CCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWA-QSDVTIVSEDMRTWN--APEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~-~~nV~vi~~D~~~~~--~p~k~Di 417 (626)
++.+|||+|||+|.++..+ ++ .|+ .+|++||.|+.++ .++++.+.|++. ++ ++++++|+.++- ..++||+
T Consensus 539 ~g~~VLDlg~GtG~~sl~a---a~-~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~-v~~i~~D~~~~l~~~~~~fD~ 612 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHA---GL-GGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRA-HRLIQADCLAWLREANEQFDL 612 (703)
T ss_dssp TTCEEEEESCTTCHHHHHH---HH-TTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTT-EEEEESCHHHHHHHCCCCEEE
T ss_pred CCCcEEEeeechhHHHHHH---HH-CCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccc-eEEEecCHHHHHHhcCCCccE
Confidence 4679999999999999643 33 343 4899999999887 888888899987 45 999999998852 3478999
Q ss_pred EEeccccccCCCC----------CcHHHHHHHHHhcccCcEEEec
Q psy17734 418 MVSELLGSFGDNE----------LSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 418 IVSEllgsfg~~E----------l~pe~L~~~~r~LkpgGi~IP~ 452 (626)
||+++.- |.... ...+++..+.+.|||||+++-+
T Consensus 613 Ii~DPP~-f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s 656 (703)
T 3v97_A 613 IFIDPPT-FSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFS 656 (703)
T ss_dssp EEECCCS-BC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCcc-ccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9998763 32111 1245677888999999999843
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.9e-08 Score=97.74 Aligned_cols=93 Identities=19% Similarity=0.153 Sum_probs=66.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccc-cCCCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRT-WNAPEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~-~~~p~k~DiIV 419 (626)
++.+|||+|||+|.++..++..+ .+|+|+|.++.++ .+++....++ . ++++.+|+.+ +...++||+|+
T Consensus 70 ~~~~vLdiG~G~G~~~~~l~~~~------~~v~~vD~~~~~~~~a~~~~~~~~---~-v~~~~~d~~~~~~~~~~fD~v~ 139 (231)
T 1vbf_A 70 KGQKVLEIGTGIGYYTALIAEIV------DKVVSVEINEKMYNYASKLLSYYN---N-IKLILGDGTLGYEEEKPYDRVV 139 (231)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS------SEEEEEESCHHHHHHHHHHHTTCS---S-EEEEESCGGGCCGGGCCEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHc------CEEEEEeCCHHHHHHHHHHHhhcC---C-eEEEECCcccccccCCCccEEE
Confidence 56799999999999986544332 3999999999877 5555443333 4 9999999987 33347899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+...- .. . .+.+.+.|||||.++-.
T Consensus 140 ~~~~~----~~-~---~~~~~~~L~pgG~l~~~ 164 (231)
T 1vbf_A 140 VWATA----PT-L---LCKPYEQLKEGGIMILP 164 (231)
T ss_dssp ESSBB----SS-C---CHHHHHTEEEEEEEEEE
T ss_pred ECCcH----HH-H---HHHHHHHcCCCcEEEEE
Confidence 85321 11 1 24577899999987643
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.9e-09 Score=105.71 Aligned_cols=105 Identities=15% Similarity=0.102 Sum_probs=71.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCC--------------------------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQW-------------------------- 394 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~-------------------------- 394 (626)
++.+|||+|||+|.++..+ ++ .+. .+|+|+|.++.++ .+++....++-
T Consensus 56 ~~~~vLDlGcG~G~~~~~l---~~-~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLS---AC-ESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEE 130 (265)
T ss_dssp CEEEEEEESCTTCCGGGTT---GG-GTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHH
T ss_pred CCCEEEEECCCccHHHHHH---hh-ccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHH
Confidence 5679999999999998532 22 232 3999999999877 44444322210
Q ss_pred --CCCcE-EEEEecccccCC--C---CCccEEEeccccccCCCC--CcHHHHHHHHHhcccCcEEEec
Q psy17734 395 --AQSDV-TIVSEDMRTWNA--P---EKADIMVSELLGSFGDNE--LSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 395 --~~~nV-~vi~~D~~~~~~--p---~k~DiIVSEllgsfg~~E--l~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..+ | +++.+|+.+... + ++||+|++...-...... ....++..+.+.|||||.++-.
T Consensus 131 ~l~~~-v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 197 (265)
T 2i62_A 131 KLRRA-IKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMV 197 (265)
T ss_dssp HHHHH-EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred Hhhhh-heeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEE
Confidence 012 8 999999998653 3 689999985432211112 2356888899999999988754
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.3e-08 Score=108.91 Aligned_cols=103 Identities=16% Similarity=0.015 Sum_probs=71.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HH-------HHHHHHcCCC-CCcEEEEEeccc-c-cC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VG-------LKYKKEEQWA-QSDVTIVSEDMR-T-WN 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a-------~~~~~~n~~~-~~nV~vi~~D~~-~-~~ 410 (626)
++.+|||+|||+|.++..++ +..++ .+|+|||.++.++ .| +++....++. + ||+++.+|.. + +.
T Consensus 242 ~g~~VLDLGCGsG~la~~LA---~~~g~-~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~-nV~~i~gD~~~~~~~ 316 (433)
T 1u2z_A 242 KGDTFMDLGSGVGNCVVQAA---LECGC-ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLN-NVEFSLKKSFVDNNR 316 (433)
T ss_dssp TTCEEEEESCTTSHHHHHHH---HHHCC-SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCC-CEEEEESSCSTTCHH
T ss_pred CCCEEEEeCCCcCHHHHHHH---HHCCC-CEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCC-ceEEEEcCccccccc
Confidence 56899999999999986443 33343 4899999999776 55 5555556642 3 5999997543 2 11
Q ss_pred ---CCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 411 ---APEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 411 ---~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
...+||+|++... +..+..+..|..+.+.|||||.++-.
T Consensus 317 ~~~~~~~FDvIvvn~~---l~~~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 317 VAELIPQCDVILVNNF---LFDEDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp HHHHGGGCSEEEECCT---TCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred cccccCCCCEEEEeCc---cccccHHHHHHHHHHhCCCCeEEEEe
Confidence 1368999997421 11233466788889999999987744
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-08 Score=99.44 Aligned_cols=101 Identities=19% Similarity=0.160 Sum_probs=70.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhh-cCCccEEEEEeCCHHHH-HHHHHHHHcCC----CCCcEEEEEecccccC-----
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKE-ANRKVRVYAVEKNMSAV-VGLKYKKEEQW----AQSDVTIVSEDMRTWN----- 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~-~g~~~~V~AVE~np~a~-~a~~~~~~n~~----~~~nV~vi~~D~~~~~----- 410 (626)
++.+|||+|||+|.++..+++.... .....+|+++|.++.++ .++++...++. .+ +|+++.+|..+..
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~ 158 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKID-NFKIIHKNIYQVNEEEKK 158 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSST-TEEEEECCGGGCCHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccC-CEEEEECChHhcccccCc
Confidence 5679999999999998654433210 00224999999999876 66676666662 23 4999999998853
Q ss_pred CCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 411 APEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 411 ~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
..++||+|++...- . .+++.+.+.|||||+++-
T Consensus 159 ~~~~fD~I~~~~~~----~----~~~~~~~~~LkpgG~lv~ 191 (227)
T 2pbf_A 159 ELGLFDAIHVGASA----S----ELPEILVDLLAENGKLII 191 (227)
T ss_dssp HHCCEEEEEECSBB----S----SCCHHHHHHEEEEEEEEE
T ss_pred cCCCcCEEEECCch----H----HHHHHHHHhcCCCcEEEE
Confidence 23689999884321 1 234667789999998763
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-08 Score=107.88 Aligned_cols=132 Identities=17% Similarity=0.162 Sum_probs=85.4
Q ss_pred HHHHhhCCHHHHHHHHHHHHHH-------HhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCH
Q psy17734 308 TYEVFEKDPIKYIRYQEAVQQA-------LLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNM 380 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI~~a-------l~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np 380 (626)
.|+.+.+++.....|.+++... +.+.. +..++.+|||||||+|.++..++++.. ..+++++|.++
T Consensus 147 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~----~~~~~~~vLDvG~G~G~~~~~l~~~~p----~~~~~~~D~~~ 218 (348)
T 3lst_A 147 LDAYFDGDAEVEALYYEGMETVSAAEHLILARAG----DFPATGTVADVGGGRGGFLLTVLREHP----GLQGVLLDRAE 218 (348)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHS----CCCSSEEEEEETCTTSHHHHHHHHHCT----TEEEEEEECHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhC----CccCCceEEEECCccCHHHHHHHHHCC----CCEEEEecCHH
Confidence 5677777887777776665432 22211 123567999999999999865444332 26899999943
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 381 SAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 381 ~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+. .+.....+..++ |+++.+|+.+ ..| ++|+|++...-+....+....+|..+.+.|||||.++-.
T Consensus 219 ~~~--~~~~~~~~~~~~-v~~~~~d~~~-~~p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~ 285 (348)
T 3lst_A 219 VVA--RHRLDAPDVAGR-WKVVEGDFLR-EVP-HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVI 285 (348)
T ss_dssp HHT--TCCCCCGGGTTS-EEEEECCTTT-CCC-CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred Hhh--cccccccCCCCC-eEEEecCCCC-CCC-CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 322 222223455666 9999999973 345 899998854322222222246889999999999988643
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.4e-08 Score=103.64 Aligned_cols=98 Identities=18% Similarity=0.185 Sum_probs=70.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH-------cCC---CCCcEEEEEecccccC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE-------EQW---AQSDVTIVSEDMRTWN 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~-------n~~---~~~nV~vi~~D~~~~~ 410 (626)
++.+|||+|||+|.++..++++ .|...+|+|+|.++.++ .++++... |++ .+ +|+++.+|+.+..
T Consensus 105 ~g~~VLDiG~G~G~~~~~la~~---~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~-~v~~~~~d~~~~~ 180 (336)
T 2b25_A 105 PGDTVLEAGSGSGGMSLFLSKA---VGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD-NVDFIHKDISGAT 180 (336)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH---HCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCC-CEEEEESCTTCCC
T ss_pred CCCEEEEeCCCcCHHHHHHHHH---hCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCC-ceEEEECChHHcc
Confidence 5679999999999998655443 23335999999999776 66666553 222 24 4999999999863
Q ss_pred --CC-CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 411 --AP-EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 411 --~p-~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.+ ++||+|++.... . ..++..+.+.|||||.++
T Consensus 181 ~~~~~~~fD~V~~~~~~----~---~~~l~~~~~~LkpgG~lv 216 (336)
T 2b25_A 181 EDIKSLTFDAVALDMLN----P---HVTLPVFYPHLKHGGVCA 216 (336)
T ss_dssp -------EEEEEECSSS----T---TTTHHHHGGGEEEEEEEE
T ss_pred cccCCCCeeEEEECCCC----H---HHHHHHHHHhcCCCcEEE
Confidence 33 579999985431 1 226788889999999987
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.7e-08 Score=98.67 Aligned_cols=102 Identities=12% Similarity=0.057 Sum_probs=68.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHH-HHHH----HHHcCCCCCcEEEEEecccccCCCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVV-GLKY----KKEEQWAQSDVTIVSEDMRTWNAPEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~-a~~~----~~~n~~~~~nV~vi~~D~~~~~~p~k~D 416 (626)
++.+|||+|||+|.++..+++. . ...+|+|||.++.++. +.+. ....++. ||+++++|+++++.+...|
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~---~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~--~v~~~~~d~~~l~~~~~~d 100 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQ---N-PSRLVVALDADKSRMEKISAKAAAKPAKGGLP--NLLYLWATAERLPPLSGVG 100 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHH---C-TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCT--TEEEEECCSTTCCSCCCEE
T ss_pred CCCEEEEecCCCCHHHHHHHHH---C-CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCC--ceEEEecchhhCCCCCCCC
Confidence 5678999999999998654433 2 1159999999997653 2222 2234443 5999999999987653336
Q ss_pred EEEeccccccCCC-----CCcHHHHHHHHHhcccCcEEEe
Q psy17734 417 IMVSELLGSFGDN-----ELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 417 iIVSEllgsfg~~-----El~pe~L~~~~r~LkpgGi~IP 451 (626)
.++.-+ ++... +..+.++..+.+.|||||.++-
T Consensus 101 ~v~~~~--~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 138 (218)
T 3mq2_A 101 ELHVLM--PWGSLLRGVLGSSPEMLRGMAAVCRPGASFLV 138 (218)
T ss_dssp EEEEES--CCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEE
T ss_pred EEEEEc--cchhhhhhhhccHHHHHHHHHHHcCCCcEEEE
Confidence 665311 11110 1126788999999999999875
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.1e-08 Score=96.46 Aligned_cols=95 Identities=17% Similarity=0.240 Sum_probs=65.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCC-ccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC----------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANR-KVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN---------- 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~-~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~---------- 410 (626)
++.+|||+|||+|.++..+++ +.+. ..+|+|+|.++++ .. . +|+++++|+.+..
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~---~~~~~~~~v~gvD~s~~~----------~~-~-~v~~~~~d~~~~~~~~~~~~~~i 86 (201)
T 2plw_A 22 KNKIILDIGCYPGSWCQVILE---RTKNYKNKIIGIDKKIMD----------PI-P-NVYFIQGEIGKDNMNNIKNINYI 86 (201)
T ss_dssp TTEEEEEESCTTCHHHHHHHH---HTTTSCEEEEEEESSCCC----------CC-T-TCEEEECCTTTTSSCCC------
T ss_pred CCCEEEEeCCCCCHHHHHHHH---HcCCCCceEEEEeCCccC----------CC-C-CceEEEccccchhhhhhcccccc
Confidence 457899999999999865443 3221 2599999999842 12 2 4999999998875
Q ss_pred ---------------CC-CCccEEEeccccccCCCCCc---------HHHHHHHHHhcccCcEEEe
Q psy17734 411 ---------------AP-EKADIMVSELLGSFGDNELS---------PECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 411 ---------------~p-~k~DiIVSEllgsfg~~El~---------pe~L~~~~r~LkpgGi~IP 451 (626)
.+ ++||+|+|...-.+...... ..++..+.+.|||||.++-
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~ 152 (201)
T 2plw_A 87 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIV 152 (201)
T ss_dssp -----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 33 58999999754222111001 1256778899999999874
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.7e-08 Score=107.27 Aligned_cols=104 Identities=13% Similarity=0.008 Sum_probs=76.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiI 418 (626)
++.+|||+|||+|.++..+ ++ .|+ +|+|||.|+.++ .++++.+.|+..+ +++++|+.++. .+++||+|
T Consensus 214 ~g~~VLDlg~GtG~~sl~~---a~-~ga--~V~avDis~~al~~a~~n~~~ng~~~---~~~~~D~~~~l~~~~~~fD~I 284 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRA---AR-KGA--YALAVDKDLEALGVLDQAALRLGLRV---DIRHGEALPTLRGLEGPFHHV 284 (393)
T ss_dssp TTCEEEEESCTTTHHHHHH---HH-TTC--EEEEEESCHHHHHHHHHHHHHHTCCC---EEEESCHHHHHHTCCCCEEEE
T ss_pred CCCeEEEcccchhHHHHHH---HH-cCC--eEEEEECCHHHHHHHHHHHHHhCCCC---cEEEccHHHHHHHhcCCCCEE
Confidence 3689999999999999643 33 343 599999999887 7888888898863 45599998862 23459999
Q ss_pred EeccccccCCCCC--------cHHHHHHHHHhcccCcEEEeccce
Q psy17734 419 VSELLGSFGDNEL--------SPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 419 VSEllgsfg~~El--------~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
++++.- |..... ..+++..+.+.|||||+++-.+++
T Consensus 285 i~dpP~-f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 285 LLDPPT-LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp EECCCC-CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EECCCc-CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 998753 322111 135677778899999999855544
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.5e-08 Score=93.25 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=66.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
++.+|||+|||+|.++..++ +. + .+|+|+|.++.+....+.. .. +|+++.+| ..+ ..++||+|++.
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~---~~-~--~~v~~vD~s~~~~~~a~~~-----~~-~v~~~~~d-~~~-~~~~~D~v~~~ 82 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLL---EF-A--TKLYCIDINVIALKEVKEK-----FD-SVITLSDP-KEI-PDNSVDFILFA 82 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHH---TT-E--EEEEEECSCHHHHHHHHHH-----CT-TSEEESSG-GGS-CTTCEEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHH---hh-c--CeEEEEeCCHHHHHHHHHh-----CC-CcEEEeCC-CCC-CCCceEEEEEc
Confidence 56799999999999985433 32 2 3999999999877333322 23 49999999 222 23689999984
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..-... +....++..+.+.|||||.++-.
T Consensus 83 ~~l~~~--~~~~~~l~~~~~~L~pgG~l~~~ 111 (170)
T 3i9f_A 83 NSFHDM--DDKQHVISEVKRILKDDGRVIII 111 (170)
T ss_dssp SCSTTC--SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred cchhcc--cCHHHHHHHHHHhcCCCCEEEEE
Confidence 432221 23467899999999999998754
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-08 Score=102.76 Aligned_cols=92 Identities=22% Similarity=0.273 Sum_probs=68.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVS 420 (626)
++.+|||+|||+|.++..++ + .+ .+|+|+|.++.+....+. + . |++++.+|+++++.+ ++||+|++
T Consensus 34 ~~~~vLDiGcG~G~~~~~l~---~-~~--~~v~gvD~s~~~~~~a~~---~--~--~~~~~~~d~~~~~~~~~~fD~v~~ 100 (261)
T 3ege_A 34 KGSVIADIGAGTGGYSVALA---N-QG--LFVYAVEPSIVMRQQAVV---H--P--QVEWFTGYAENLALPDKSVDGVIS 100 (261)
T ss_dssp TTCEEEEETCTTSHHHHHHH---T-TT--CEEEEECSCHHHHHSSCC---C--T--TEEEECCCTTSCCSCTTCBSEEEE
T ss_pred CCCEEEEEcCcccHHHHHHH---h-CC--CEEEEEeCCHHHHHHHHh---c--c--CCEEEECchhhCCCCCCCEeEEEE
Confidence 56799999999999986433 2 33 499999999966532111 1 1 499999999998765 78999998
Q ss_pred cc-ccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 421 EL-LGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 El-lgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.. ++++ +..+.++..+.+.|| ||.++
T Consensus 101 ~~~l~~~---~~~~~~l~~~~~~Lk-gG~~~ 127 (261)
T 3ege_A 101 ILAIHHF---SHLEKSFQEMQRIIR-DGTIV 127 (261)
T ss_dssp ESCGGGC---SSHHHHHHHHHHHBC-SSCEE
T ss_pred cchHhhc---cCHHHHHHHHHHHhC-CcEEE
Confidence 54 3333 345778999999999 99443
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.8e-08 Score=98.72 Aligned_cols=94 Identities=17% Similarity=0.142 Sum_probs=67.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccc-cCCCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRT-WNAPEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~-~~~p~k~DiIV 419 (626)
++.+|||+|||+|.++..+++.. + .+|+++|.++.++ .++++....+.. +++++.+|... +....+||+|+
T Consensus 91 ~~~~vLdiG~G~G~~~~~la~~~---~--~~v~~vD~~~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~fD~Ii 163 (235)
T 1jg1_A 91 PGMNILEVGTGSGWNAALISEIV---K--TDVYTIERIPELVEFAKRNLERAGVK--NVHVILGDGSKGFPPKAPYDVII 163 (235)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHH---C--SCEEEEESCHHHHHHHHHHHHHTTCC--SEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHh---C--CEEEEEeCCHHHHHHHHHHHHHcCCC--CcEEEECCcccCCCCCCCccEEE
Confidence 45689999999999986544443 2 3999999999876 667776677765 59999999732 22224699999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+... .. . +.+.+.+.|||||+++
T Consensus 164 ~~~~----~~-~---~~~~~~~~L~pgG~lv 186 (235)
T 1jg1_A 164 VTAG----AP-K---IPEPLIEQLKIGGKLI 186 (235)
T ss_dssp ECSB----BS-S---CCHHHHHTEEEEEEEE
T ss_pred ECCc----HH-H---HHHHHHHhcCCCcEEE
Confidence 8432 11 1 2245678999999865
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.70 E-value=9.1e-09 Score=108.62 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=75.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
+.+|||+|||+|.++..+++.+ .+.+|+++|.++.++ .++++...++.. ++++.+|+.+.. +++||+|++.
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~----~~~~v~~vD~s~~~l~~a~~~~~~~~~~---~~~~~~d~~~~~-~~~fD~Iv~~ 268 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHS----PKIRLTLCDVSAPAVEASRATLAANGVE---GEVFASNVFSEV-KGRFDMIISN 268 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHC----TTCBCEEEESBHHHHHHHHHHHHHTTCC---CEEEECSTTTTC-CSCEEEEEEC
T ss_pred CCeEEEecCccCHHHHHHHHHC----CCCEEEEEECCHHHHHHHHHHHHHhCCC---CEEEEccccccc-cCCeeEEEEC
Confidence 4579999999999996544432 224999999999877 777777777763 677999998765 5789999997
Q ss_pred cccccCCC---CCcHHHHHHHHHhcccCcEEEe
Q psy17734 422 LLGSFGDN---ELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 422 llgsfg~~---El~pe~L~~~~r~LkpgGi~IP 451 (626)
..-+.+.. +....++..+.+.|||||.++-
T Consensus 269 ~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i 301 (343)
T 2pjd_A 269 PPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRI 301 (343)
T ss_dssp CCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCcccCccCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 65332211 1135678888999999998764
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.9e-08 Score=97.57 Aligned_cols=91 Identities=14% Similarity=0.228 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC--------C-
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA--------P- 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------p- 412 (626)
++.+|||+|||+|.++.. ++++ + .+|+|||.++++ .. . +|+++++|+++... +
T Consensus 25 ~g~~VLDlG~G~G~~s~~---la~~-~--~~V~gvD~~~~~----------~~-~-~v~~~~~D~~~~~~~~~~~~~~~~ 86 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQV---LNSL-A--RKIISIDLQEME----------EI-A-GVRFIRCDIFKETIFDDIDRALRE 86 (191)
T ss_dssp TTCEEEEESCTTCHHHHH---HTTT-C--SEEEEEESSCCC----------CC-T-TCEEEECCTTSSSHHHHHHHHHHH
T ss_pred CCCEEEEEeecCCHHHHH---HHHc-C--CcEEEEeccccc----------cC-C-CeEEEEccccCHHHHHHHHHHhhc
Confidence 568999999999999864 3333 3 599999999842 12 2 59999999988652 1
Q ss_pred ---CCccEEEeccccccCCCC---------CcHHHHHHHHHhcccCcEEE
Q psy17734 413 ---EKADIMVSELLGSFGDNE---------LSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 413 ---~k~DiIVSEllgsfg~~E---------l~pe~L~~~~r~LkpgGi~I 450 (626)
++||+|+|+..-...... +....++.+.++|||||.++
T Consensus 87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv 136 (191)
T 3dou_A 87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVL 136 (191)
T ss_dssp HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEE
Confidence 489999997632211111 11245667789999999988
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.5e-08 Score=92.64 Aligned_cols=92 Identities=16% Similarity=0.180 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
++.+|||+|||+|.++. .+++ .+ +|+|||.|+.++.. .. +++++++|+.+...+++||+|++.
T Consensus 23 ~~~~vLD~GcG~G~~~~---~l~~-~~---~v~gvD~s~~~~~~---------~~-~~~~~~~d~~~~~~~~~fD~i~~n 85 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITE---QLRK-RN---TVVSTDLNIRALES---------HR-GGNLVRADLLCSINQESVDVVVFN 85 (170)
T ss_dssp CSCEEEEETCTTCHHHH---HHTT-TS---EEEEEESCHHHHHT---------CS-SSCEEECSTTTTBCGGGCSEEEEC
T ss_pred CCCeEEEeccCccHHHH---HHHh-cC---cEEEEECCHHHHhc---------cc-CCeEEECChhhhcccCCCCEEEEC
Confidence 45699999999999985 3333 22 99999999987743 23 499999999884444799999997
Q ss_pred cccccCCCC-------CcHHHHHHHHHhcccCcEEEe
Q psy17734 422 LLGSFGDNE-------LSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 422 llgsfg~~E-------l~pe~L~~~~r~LkpgGi~IP 451 (626)
+.-...... ...+.+..+.+.| |||.++-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~ 121 (170)
T 3q87_B 86 PPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYL 121 (170)
T ss_dssp CCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEE
T ss_pred CCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEE
Confidence 643211111 1245677777777 9998764
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.70 E-value=8.8e-08 Score=110.42 Aligned_cols=103 Identities=11% Similarity=0.140 Sum_probs=71.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH------cCCCCCcEEEEEecccccCCC-C
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE------EQWAQSDVTIVSEDMRTWNAP-E 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~------n~~~~~nV~vi~~D~~~~~~p-~ 413 (626)
++.+|||||||+|.++.. .++..+...+|+|||.++.++ .+++.++. ++.. +|+++++|+.++..+ +
T Consensus 721 ~g~rVLDVGCGTG~lai~---LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~--nVefiqGDa~dLp~~d~ 795 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDS---LLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK--SATLYDGSILEFDSRLH 795 (950)
T ss_dssp CCSEEEEETCSSSHHHHH---HTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS--EEEEEESCTTSCCTTSC
T ss_pred CCCEEEEECCCCCHHHHH---HHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC--ceEEEECchHhCCcccC
Confidence 567999999999999853 333322224999999999877 55554432 2333 599999999998765 7
Q ss_pred CccEEEec-cccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 414 KADIMVSE-LLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 414 k~DiIVSE-llgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+||+|++- .+.++ ..+....++..+.+.||||+++|
T Consensus 796 sFDlVV~~eVLeHL-~dp~l~~~L~eI~RvLKPG~LII 832 (950)
T 3htx_A 796 DVDIGTCLEVIEHM-EEDQACEFGEKVLSLFHPKLLIV 832 (950)
T ss_dssp SCCEEEEESCGGGS-CHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CeeEEEEeCchhhC-ChHHHHHHHHHHHHHcCCCEEEE
Confidence 89999883 33322 11222347788899999994444
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=6.2e-09 Score=103.59 Aligned_cols=104 Identities=11% Similarity=0.000 Sum_probs=67.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCC-HHHH-H---HHHHHHHcCCCCCcEEEEEecccccCC--CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN-MSAV-V---GLKYKKEEQWAQSDVTIVSEDMRTWNA--PEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~n-p~a~-~---a~~~~~~n~~~~~nV~vi~~D~~~~~~--p~k 414 (626)
++.+|||||||+|.++..+++ +..+ .+|+|||.| +.++ . ++++....++. ||+++.+|+++++. ...
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~--~~~~--~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~--~v~~~~~d~~~l~~~~~d~ 97 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAI--NDQN--TFYIGIDPVKENLFDISKKIIKKPSKGGLS--NVVFVIAAAESLPFELKNI 97 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHH--TCTT--EEEEEECSCCGGGHHHHHHHTSCGGGTCCS--SEEEECCBTTBCCGGGTTC
T ss_pred CCCEEEEEeccCcHHHHHHHH--hCCC--CEEEEEeCCHHHHHHHHHHHHHHHHHcCCC--CeEEEEcCHHHhhhhccCe
Confidence 567999999999999854322 1122 599999999 5552 3 24444456665 69999999999842 133
Q ss_pred ccEEEeccccccC---CCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 415 ADIMVSELLGSFG---DNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 415 ~DiIVSEllgsfg---~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+|.+.+...-... .....++++..+.|.|||||.++-
T Consensus 98 v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 98 ADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 4444432210000 001135688999999999998775
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.7e-08 Score=109.21 Aligned_cols=110 Identities=17% Similarity=0.023 Sum_probs=81.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiI 418 (626)
++.+|||+|||+|..+..++.... ...+|+|+|.++.++ .+++++++++.. ||+++++|.+++. .+++||+|
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~---~~g~V~AvDis~~rl~~~~~n~~r~g~~--nv~v~~~Da~~l~~~~~~~FD~I 179 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMK---GKGLLVTNEIFPKRAKILSENIERWGVS--NAIVTNHAPAELVPHFSGFFDRI 179 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHT---TCSEEEEECSSHHHHHHHHHHHHHHTCS--SEEEECCCHHHHHHHHTTCEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHcC---CCCEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEeCCHHHhhhhccccCCEE
Confidence 578999999999999865444332 124999999999876 777888888886 6999999998875 45789999
Q ss_pred Eecccc----ccCCC---------CC-------cHHHHHHHHHhcccCcEEEecccee
Q psy17734 419 VSELLG----SFGDN---------EL-------SPECLYAAQKYLKEDGISIPYNYTS 456 (626)
Q Consensus 419 VSEllg----sfg~~---------El-------~pe~L~~~~r~LkpgGi~IP~~~t~ 456 (626)
+++..- .+--+ +. ..++|+.+.++|||||+++-+.+|.
T Consensus 180 l~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 180 VVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp EEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred EECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 997642 11100 00 0156778889999999999665554
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.68 E-value=3.2e-08 Score=97.58 Aligned_cols=100 Identities=17% Similarity=0.141 Sum_probs=68.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcC--CccEEEEEeCCHHHH-HHHHHHHHcCC----CCCcEEEEEecccccCC-CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEAN--RKVRVYAVEKNMSAV-VGLKYKKEEQW----AQSDVTIVSEDMRTWNA-PE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g--~~~~V~AVE~np~a~-~a~~~~~~n~~----~~~nV~vi~~D~~~~~~-p~ 413 (626)
++.+|||+|||+|.++..+++.....+ .+.+|+++|.++.+. .++++....++ .. +|+++.+|..+... ..
T Consensus 84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~ 162 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG-QLLIVEGDGRKGYPPNA 162 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT-SEEEEESCGGGCCGGGC
T ss_pred CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCC-ceEEEECCcccCCCcCC
Confidence 567999999999999876555332100 013999999999876 66666555441 13 49999999987322 26
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+||+|++...- .+ +++.+.+.|||||.++
T Consensus 163 ~fD~I~~~~~~----~~----~~~~~~~~LkpgG~lv 191 (227)
T 1r18_A 163 PYNAIHVGAAA----PD----TPTELINQLASGGRLI 191 (227)
T ss_dssp SEEEEEECSCB----SS----CCHHHHHTEEEEEEEE
T ss_pred CccEEEECCch----HH----HHHHHHHHhcCCCEEE
Confidence 89999874321 12 2366778999999866
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.6e-08 Score=105.33 Aligned_cols=100 Identities=12% Similarity=-0.002 Sum_probs=78.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhc-CCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC---CCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEA-NRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---APEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~-g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---~p~k~D 416 (626)
++.+|||++||+|.++.. ++++. |+ .+|+|||.|+.++ .++++++.|++.++.++++++|+.++. ..++||
T Consensus 52 ~g~~VLDlfaGtG~~sl~---aa~~~~ga-~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD 127 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIR---FLLETSCV-EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFD 127 (392)
T ss_dssp SCEEEEESSCTTSHHHHH---HHHHCSCE-EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEE
T ss_pred CCCEEEECCCcccHHHHH---HHHhCCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCc
Confidence 467899999999999954 44432 33 4999999999887 888899999986311999999997752 346899
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+|+.++.| ...++++.+.+.|++||+++-
T Consensus 128 ~V~lDP~g------~~~~~l~~a~~~Lk~gGll~~ 156 (392)
T 3axs_A 128 YVDLDPFG------TPVPFIESVALSMKRGGILSL 156 (392)
T ss_dssp EEEECCSS------CCHHHHHHHHHHEEEEEEEEE
T ss_pred EEEECCCc------CHHHHHHHHHHHhCCCCEEEE
Confidence 99998832 124688888899999997653
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.9e-08 Score=100.86 Aligned_cols=100 Identities=14% Similarity=0.144 Sum_probs=66.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeC-CHHHH-HHHHHH-----HHcCCC----CCcEEEEEecccc--
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEK-NMSAV-VGLKYK-----KEEQWA----QSDVTIVSEDMRT-- 408 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~-np~a~-~a~~~~-----~~n~~~----~~nV~vi~~D~~~-- 408 (626)
++.+|||+|||+|.++..+++ .|. .+|+|+|. ++.++ .++++. ..++.. ++ |+++..|..+
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~----~~~-~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~-v~~~~~~~~~~~ 152 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFL----AGA-DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRAS-PKVVPYRWGDSP 152 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHH----TTC-SEEEEEECSCHHHHHHHHHHHHTTCC----------CC-CEEEECCTTSCT
T ss_pred CCCeEEEecccccHHHHHHHH----cCC-CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCC-eEEEEecCCCcc
Confidence 567999999999999864333 232 49999999 88877 667766 344443 34 8888766443
Q ss_pred --cC---CCCCccEEEe-ccccccCCCCCcHHHHHHHHHhcc---c--CcEEE
Q psy17734 409 --WN---APEKADIMVS-ELLGSFGDNELSPECLYAAQKYLK---E--DGISI 450 (626)
Q Consensus 409 --~~---~p~k~DiIVS-Ellgsfg~~El~pe~L~~~~r~Lk---p--gGi~I 450 (626)
+. ..++||+||+ +.+.. .+..+.++..+.++|| | ||+++
T Consensus 153 ~~~~~~~~~~~fD~Ii~~dvl~~---~~~~~~ll~~l~~~Lk~~~p~~gG~l~ 202 (281)
T 3bzb_A 153 DSLQRCTGLQRFQVVLLADLLSF---HQAHDALLRSVKMLLALPANDPTAVAL 202 (281)
T ss_dssp HHHHHHHSCSSBSEEEEESCCSC---GGGHHHHHHHHHHHBCCTTTCTTCEEE
T ss_pred HHHHhhccCCCCCEEEEeCcccC---hHHHHHHHHHHHHHhcccCCCCCCEEE
Confidence 21 2478999987 44321 2234678899999999 9 99643
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.4e-08 Score=105.11 Aligned_cols=97 Identities=15% Similarity=0.030 Sum_probs=76.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc---------------CCCCCcEEEEEecc
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE---------------QWAQSDVTIVSEDM 406 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n---------------~~~~~nV~vi~~D~ 406 (626)
+.+|||+|||+|.++.. ++++.+. .+|+|+|.++.++ .++++++.| +.. +|+++++|+
T Consensus 48 ~~~VLDl~aGtG~~~l~---~a~~~~~-~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~--~i~v~~~Da 121 (378)
T 2dul_A 48 PKIVLDALSATGIRGIR---FALETPA-EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK--TIVINHDDA 121 (378)
T ss_dssp CSEEEESSCTTSHHHHH---HHHHSSC-SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS--EEEEEESCH
T ss_pred CCEEEECCCchhHHHHH---HHHhCCC-CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC--ceEEEcCcH
Confidence 57899999999999954 4444333 4899999999887 888888888 774 499999999
Q ss_pred cccC--CCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 407 RTWN--APEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 407 ~~~~--~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
.++. ..++||+|+..+.|+ ..++++.+.+.||+||+++-
T Consensus 122 ~~~~~~~~~~fD~I~lDP~~~------~~~~l~~a~~~lk~gG~l~v 162 (378)
T 2dul_A 122 NRLMAERHRYFHFIDLDPFGS------PMEFLDTALRSAKRRGILGV 162 (378)
T ss_dssp HHHHHHSTTCEEEEEECCSSC------CHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHhccCCCCEEEeCCCCC------HHHHHHHHHHhcCCCCEEEE
Confidence 8763 246899999876542 25788999999999997654
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.67 E-value=6.2e-08 Score=107.08 Aligned_cols=118 Identities=19% Similarity=0.148 Sum_probs=84.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiI 418 (626)
++.+|||+|||+|..+..++.. .+...+|+|+|.++.++ .+++++.+++.. ||+++++|++++. .+++||.|
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~---~~~~g~V~avDis~~~l~~~~~n~~r~g~~--nv~~~~~D~~~~~~~~~~~fD~I 191 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISAR---MNNEGAILANEFSASRVKVLHANISRCGIS--NVALTHFDGRVFGAAVPEMFDAI 191 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHH---TTTCSEEEEECSSHHHHHHHHHHHHHHTCC--SEEEECCCSTTHHHHSTTCEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHHHHHHcCCC--cEEEEeCCHHHhhhhccccCCEE
Confidence 5679999999999999654433 32225999999999776 777777778875 5999999999875 45789999
Q ss_pred Eeccc----cccCCC-CC---------------cHHHHHHHHHhcccCcEEEeccceeeEEeccChHh
Q psy17734 419 VSELL----GSFGDN-EL---------------SPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKL 466 (626)
Q Consensus 419 VSEll----gsfg~~-El---------------~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l 466 (626)
+++.. |.+..+ +. ..++|..+.++|||||+++-..++.. |-+....
T Consensus 192 l~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~--~~Ene~v 257 (479)
T 2frx_A 192 LLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN--QEENEAV 257 (479)
T ss_dssp EEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS--STTTHHH
T ss_pred EECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC--cccCHHH
Confidence 99754 222111 11 12467788899999999986555433 5555543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.7e-07 Score=93.40 Aligned_cols=105 Identities=10% Similarity=0.098 Sum_probs=75.0
Q ss_pred CCCEEEEEcCCC---chHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-------
Q psy17734 342 VVTTIMVVGAGR---GPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN------- 410 (626)
Q Consensus 342 ~~~~VLDvG~Gt---G~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~------- 410 (626)
+..+|||||||+ |.+...+.+.. .+ .+|++||.+|.++ .+++... . .++ ++++.+|+++..
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~--p~--~~v~~vD~sp~~l~~Ar~~~~-~--~~~-v~~~~~D~~~~~~~~~~~~ 148 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVN--PD--ARVVYVDIDPMVLTHGRALLA-K--DPN-TAVFTADVRDPEYILNHPD 148 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHC--TT--CEEEEEESSHHHHHHHHHHHT-T--CTT-EEEEECCTTCHHHHHHSHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhC--CC--CEEEEEECChHHHHHHHHhcC-C--CCC-eEEEEeeCCCchhhhccch
Confidence 346899999999 98764322221 12 5999999999877 5554432 1 244 999999998642
Q ss_pred ----CC-CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 411 ----AP-EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 411 ----~p-~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
++ .++|+|++..+-++...+....++..+.+.|||||.++-...
T Consensus 149 ~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 149 VRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp HHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 11 479999997655555555557789999999999999875543
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.7e-09 Score=110.54 Aligned_cols=100 Identities=17% Similarity=0.186 Sum_probs=66.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHH-HHHcCCCCCcEEEE--EecccccCCCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKY-KKEEQWAQSDVTIV--SEDMRTWNAPEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~-~~~n~~~~~nV~vi--~~D~~~~~~p~k~DiI 418 (626)
++.+|||+|||+|.++.. +++. .+|+|||.++++..+.+. ......+. ||+++ ++|+++++ +++||+|
T Consensus 74 ~g~~VLDlGcGtG~~s~~---la~~----~~V~gvD~s~m~~~a~~~~~~~~~~~~-~v~~~~~~~D~~~l~-~~~fD~V 144 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYY---AASR----PHVMDVRAYTLGVGGHEVPRITESYGW-NIVKFKSRVDIHTLP-VERTDVI 144 (265)
T ss_dssp CCEEEEEESCTTSHHHHH---HHTS----TTEEEEEEECCCCSSCCCCCCCCBTTG-GGEEEECSCCTTTSC-CCCCSEE
T ss_pred CCCEEEEeCcCCCHHHHH---HHHc----CcEEEEECchhhhhhhhhhhhhhccCC-CeEEEecccCHhHCC-CCCCcEE
Confidence 567999999999999854 3332 389999999852211110 00011111 49999 99999987 5789999
Q ss_pred EeccccccCCCCCc-----HHHHHHHHHhcccCc--EEEe
Q psy17734 419 VSELLGSFGDNELS-----PECLYAAQKYLKEDG--ISIP 451 (626)
Q Consensus 419 VSEllgsfg~~El~-----pe~L~~~~r~LkpgG--i~IP 451 (626)
+|+.. ....+... ..+|..+.++||||| .++-
T Consensus 145 ~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~ 183 (265)
T 2oxt_A 145 MCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVV 183 (265)
T ss_dssp EECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred EEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 99866 22222111 136788889999999 7764
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.66 E-value=7.3e-08 Score=97.17 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=66.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..++... .+ .+|+|+|.++.++ .+.+. . . +++++.+|+.+++.+ ++||+|+
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~--~~--~~v~~vD~s~~~~~~a~~~----~--~-~~~~~~~d~~~~~~~~~~fD~v~ 153 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADAL--PE--ITTFGLDVSKVAIKAAAKR----Y--P-QVTFCVASSHRLPFSDTSMDAII 153 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTC--TT--SEEEEEESCHHHHHHHHHH----C--T-TSEEEECCTTSCSBCTTCEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhC--CC--CeEEEEeCCHHHHHHHHHh----C--C-CcEEEEcchhhCCCCCCceeEEE
Confidence 46799999999999986443321 13 4999999999877 33332 1 2 499999999988754 6899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+... +..+..+.+.|||||.++-
T Consensus 154 ~~~~---------~~~l~~~~~~L~pgG~l~~ 176 (269)
T 1p91_A 154 RIYA---------PCKAEELARVVKPGGWVIT 176 (269)
T ss_dssp EESC---------CCCHHHHHHHEEEEEEEEE
T ss_pred EeCC---------hhhHHHHHHhcCCCcEEEE
Confidence 8321 2357888999999998763
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.65 E-value=7.3e-08 Score=102.96 Aligned_cols=97 Identities=14% Similarity=0.097 Sum_probs=74.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccc-cCC--CCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRT-WNA--PEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~-~~~--p~k~Di 417 (626)
++.+|||+| |+|.++..++.. +...+|+|+|.++.++ .++++...+++. + |+++.+|+.+ ++. .++||+
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~----~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~-v~~~~~D~~~~l~~~~~~~fD~ 244 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLS----GLPKRIAVLDIDERLTKFIEKAANEIGYE-D-IEIFTFDLRKPLPDYALHKFDT 244 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHH----TCCSEEEEECSCHHHHHHHHHHHHHHTCC-C-EEEECCCTTSCCCTTTSSCBSE
T ss_pred CCCEEEEEC-CCCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHHHHcCCC-C-EEEEEChhhhhchhhccCCccE
Confidence 467999999 999998654332 2224999999999877 788888888876 4 9999999998 543 358999
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcE
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGI 448 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi 448 (626)
|++...-... ....++..+.+.|||||.
T Consensus 245 Vi~~~p~~~~---~~~~~l~~~~~~LkpgG~ 272 (373)
T 2qm3_A 245 FITDPPETLE---AIRAFVGRGIATLKGPRC 272 (373)
T ss_dssp EEECCCSSHH---HHHHHHHHHHHTBCSTTC
T ss_pred EEECCCCchH---HHHHHHHHHHHHcccCCe
Confidence 9997641111 136788889999999993
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.2e-07 Score=96.13 Aligned_cols=114 Identities=16% Similarity=0.327 Sum_probs=85.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH---cCCCCCcEEEEEecccccC--CCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE---EQWAQSDVTIVSEDMRTWN--APEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~---n~~~~~nV~vi~~D~~~~~--~p~k~ 415 (626)
..++||.||.|.|.....++ +..+. .+|+.||+++..+ ++++.... ..+.+.+++++.+|.+++- ..+++
T Consensus 83 ~pk~VLIiGgGdG~~~revl---k~~~v-~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~y 158 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVT---RHKNV-ESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTF 158 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHH---TCTTC-CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCE
T ss_pred CCCeEEEECCCchHHHHHHH---HcCCc-ceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccC
Confidence 45789999999999986443 33233 4999999999877 66655422 2244445999999999874 34789
Q ss_pred cEEEeccccccCCCCC--cHHHHHHHHHhcccCcEEEeccceeeEE
Q psy17734 416 DIMVSELLGSFGDNEL--SPECLYAAQKYLKEDGISIPYNYTSYIA 459 (626)
Q Consensus 416 DiIVSEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP~~~t~y~a 459 (626)
|+||.++....+..+. ..++++.+.+.|+|||+++-++...+..
T Consensus 159 DvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~ 204 (294)
T 3o4f_A 159 DVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQ 204 (294)
T ss_dssp EEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSC
T ss_pred CEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccC
Confidence 9999998766655554 3789999999999999999876655543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3e-09 Score=109.43 Aligned_cols=100 Identities=17% Similarity=0.193 Sum_probs=67.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHH-HHHcCCCCCcEEEE--EecccccCCCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKY-KKEEQWAQSDVTIV--SEDMRTWNAPEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~-~~~n~~~~~nV~vi--~~D~~~~~~p~k~DiI 418 (626)
++.+|||+|||+|.++.. ++++ .+|+|||.++++..+.+. ......+. ||+++ ++|+++++ +++||+|
T Consensus 82 ~g~~VLDlGcGtG~~s~~---la~~----~~V~gVD~s~m~~~a~~~~~~~~~~~~-~v~~~~~~~D~~~l~-~~~fD~V 152 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYY---AASQ----PNVREVKAYTLGTSGHEKPRLVETFGW-NLITFKSKVDVTKME-PFQADTV 152 (276)
T ss_dssp CCEEEEEESCTTCHHHHH---HHTS----TTEEEEEEECCCCTTSCCCCCCCCTTG-GGEEEECSCCGGGCC-CCCCSEE
T ss_pred CCCEEEEeccCCCHHHHH---HHHc----CCEEEEECchhhhhhhhchhhhhhcCC-CeEEEeccCcHhhCC-CCCcCEE
Confidence 567999999999999854 3332 289999999842221111 00111111 49999 99999987 5789999
Q ss_pred EeccccccCCCCCc-----HHHHHHHHHhcccCc--EEEe
Q psy17734 419 VSELLGSFGDNELS-----PECLYAAQKYLKEDG--ISIP 451 (626)
Q Consensus 419 VSEllgsfg~~El~-----pe~L~~~~r~LkpgG--i~IP 451 (626)
+|+.. .+..+... ..+|..+.++||||| .++-
T Consensus 153 vsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~ 191 (276)
T 2wa2_A 153 LCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCV 191 (276)
T ss_dssp EECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEE
T ss_pred EECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 99876 32222111 136788889999999 7774
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.63 E-value=8.5e-08 Score=92.44 Aligned_cols=88 Identities=15% Similarity=0.058 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++.. +. .+|+|||.++.++ .++++.. . ++++++|+.+++ ++||+|++
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~----~~-~~v~~vD~~~~~~~~a~~~~~------~-~~~~~~d~~~~~--~~~D~v~~ 116 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLL----GA-ESVTAFDIDPDAIETAKRNCG------G-VNFMVADVSEIS--GKYDTWIM 116 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHT----TB-SEEEEEESCHHHHHHHHHHCT------T-SEEEECCGGGCC--CCEEEEEE
T ss_pred CCCEEEEEeCCccHHHHHHHHc----CC-CEEEEEECCHHHHHHHHHhcC------C-CEEEECcHHHCC--CCeeEEEE
Confidence 4679999999999998643332 32 3899999999887 4444331 3 999999999874 78999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhc
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYL 443 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~L 443 (626)
...-..........++..+.+.+
T Consensus 117 ~~p~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 117 NPPFGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp CCCC-------CHHHHHHHHHHE
T ss_pred CCCchhccCchhHHHHHHHHHhc
Confidence 87533322222356777777777
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-07 Score=103.51 Aligned_cols=109 Identities=19% Similarity=0.152 Sum_probs=79.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CC-CCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--AP-EKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p-~k~Di 417 (626)
++.+|||+|||+|..+..++.. .+.+.+|+|+|.++.++ .+.++..+.+.. ||+++++|++++. .+ ++||+
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~---~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~--~v~~~~~D~~~~~~~~~~~~fD~ 333 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAEL---MKNKGKIYAFDVDKMRMKRLKDFVKRMGIK--IVKPLVKDARKAPEIIGEEVADK 333 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHH---TTTCSEEEEECSCHHHHHHHHHHHHHTTCC--SEEEECSCTTCCSSSSCSSCEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHH---cCCCCEEEEEcCCHHHHHHHHHHHHHcCCC--cEEEEEcChhhcchhhccCCCCE
Confidence 5679999999999998654433 22224999999999876 667777777775 5999999999876 33 67999
Q ss_pred EEecccc----ccCCC---------CCc-------HHHHHHHHHhcccCcEEEeccce
Q psy17734 418 MVSELLG----SFGDN---------ELS-------PECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 418 IVSEllg----sfg~~---------El~-------pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
|+++..- .+..+ +.. .++|..+.++|||||.++-..++
T Consensus 334 Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 334 VLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp EEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred EEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9987532 11111 111 35788888999999999855444
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.63 E-value=2.3e-08 Score=101.93 Aligned_cols=96 Identities=15% Similarity=0.105 Sum_probs=70.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--cCCCCCcEEEEEecccccCCCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--EQWAQSDVTIVSEDMRTWNAPEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--n~~~~~nV~vi~~D~~~~~~p~k~DiI 418 (626)
...+|||||||+|.++.. ++++ + .+|++||.++.++ .+++.... +++.+.+|+++.+|.+++. ++||+|
T Consensus 72 ~~~~VL~iG~G~G~~~~~---ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--~~fD~I 143 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQ---LFKY-D--THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--KKYDLI 143 (262)
T ss_dssp CCCEEEEESSCCHHHHHH---HTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--CCEEEE
T ss_pred CCCEEEEEeCCcCHHHHH---HHhC-C--CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--hhCCEE
Confidence 346899999999999853 3333 3 4999999999877 55443321 1222224999999999876 789999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
|+.... ...++..+.+.|||||+++-+
T Consensus 144 i~d~~d-------p~~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 144 FCLQEP-------DIHRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp EESSCC-------CHHHHHHHHTTEEEEEEEEEE
T ss_pred EECCCC-------hHHHHHHHHHhcCCCcEEEEE
Confidence 996321 123788899999999999865
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=5.6e-08 Score=106.84 Aligned_cols=108 Identities=14% Similarity=0.027 Sum_probs=79.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiI 418 (626)
++.+|||+|||+|..+..++.. .+...+|+|+|.++.++ .+++++.+++.. |+++++|++++. .+++||+|
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~---~~~~g~V~AvDis~~~l~~a~~n~~r~G~~---v~~~~~Da~~l~~~~~~~FD~I 174 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAAR---MGGKGLLLANEVDGKRVRGLLENVERWGAP---LAVTQAPPRALAEAFGTYFHRV 174 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHH---TTTCSEEEEECSCHHHHHHHHHHHHHHCCC---CEEECSCHHHHHHHHCSCEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHHHHHHcCCe---EEEEECCHHHhhhhccccCCEE
Confidence 5689999999999999654433 22225999999999876 777777778873 899999998875 36789999
Q ss_pred Eecccc----ccCCCCCc----------------HHHHHHHHHhcccCcEEEeccce
Q psy17734 419 VSELLG----SFGDNELS----------------PECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 419 VSEllg----sfg~~El~----------------pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
+++..- .+.-.... .++|+.+.++|||||+++-+.+|
T Consensus 175 l~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 175 LLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp EEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred EECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 986542 22111111 45778888999999999965554
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.62 E-value=9.8e-08 Score=98.30 Aligned_cols=74 Identities=23% Similarity=0.235 Sum_probs=57.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++..+ .+|+|||.++.++ .+++....++..++ ++++++|+.+++.+ .+|+|++
T Consensus 28 ~~~~VLDiG~G~G~lt~~L~~~~------~~v~~vD~~~~~~~~a~~~~~~~~~~~~-v~~~~~D~~~~~~~-~fD~vv~ 99 (285)
T 1zq9_A 28 PTDVVLEVGPGTGNMTVKLLEKA------KKVVACELDPRLVAELHKRVQGTPVASK-LQVLVGDVLKTDLP-FFDTCVA 99 (285)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHS------SEEEEEESCHHHHHHHHHHHTTSTTGGG-EEEEESCTTTSCCC-CCSEEEE
T ss_pred CCCEEEEEcCcccHHHHHHHhhC------CEEEEEECCHHHHHHHHHHHHhcCCCCc-eEEEEcceecccch-hhcEEEE
Confidence 56799999999999997554432 3999999999877 55555444454344 99999999988765 7999999
Q ss_pred ccc
Q psy17734 421 ELL 423 (626)
Q Consensus 421 Ell 423 (626)
++.
T Consensus 100 nlp 102 (285)
T 1zq9_A 100 NLP 102 (285)
T ss_dssp ECC
T ss_pred ecC
Confidence 764
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=4.2e-08 Score=90.97 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=66.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC--------C-C
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN--------A-P 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~--------~-p 412 (626)
++.+|||+|||+|.++..+++. .+...+|+|+|.++ +.. . . +++++.+|+.+.. . +
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~---~~~~~~v~~~D~~~-~~~---------~-~-~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQ---IGGKGRIIACDLLP-MDP---------I-V-GVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHH---HCTTCEEEEEESSC-CCC---------C-T-TEEEEESCTTSHHHHHHHHHHHTT
T ss_pred CCCeEEEeCCCCCHHHHHHHHH---hCCCCeEEEEECcc-ccc---------c-C-cEEEEEcccccchhhhhhhccCCC
Confidence 5679999999999998654443 22225999999998 431 1 3 4999999998874 3 3
Q ss_pred CCccEEEeccccccCCCCC---------cHHHHHHHHHhcccCcEEE
Q psy17734 413 EKADIMVSELLGSFGDNEL---------SPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El---------~pe~L~~~~r~LkpgGi~I 450 (626)
++||+|++...-+...... ...++..+.+.|||||.++
T Consensus 87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 133 (180)
T 1ej0_A 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFV 133 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 6899999965422211110 0467888899999999987
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-07 Score=100.18 Aligned_cols=129 Identities=15% Similarity=0.169 Sum_probs=81.6
Q ss_pred HHHHhhCCHHHHHHHHHHHHHH-------HhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCH
Q psy17734 308 TYEVFEKDPIKYIRYQEAVQQA-------LLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNM 380 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI~~a-------l~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np 380 (626)
.|+.+.+|+.....|.+++... +.+.+. ...+..+|||||||+|.++..++++.. + .+++++|. |
T Consensus 165 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~---~~~~~~~vlDvG~G~G~~~~~l~~~~p--~--~~~~~~D~-~ 236 (368)
T 3reo_A 165 IFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYN---GFEGLTTIVDVGGGTGAVASMIVAKYP--S--INAINFDL-P 236 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCC---TTTTCSEEEEETCTTSHHHHHHHHHCT--T--CEEEEEEC-H
T ss_pred HHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcc---cccCCCEEEEeCCCcCHHHHHHHHhCC--C--CEEEEEeh-H
Confidence 4566667776655555554332 222221 123457999999999999865444332 2 58999999 6
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 381 SAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 381 ~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
.++...+ . .. +|+++.+|+.+ +.|.. |+|++...-+....+....+|..+.+.|||||.++-..
T Consensus 237 ~~~~~a~-----~-~~-~v~~~~~d~~~-~~p~~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 237 HVIQDAP-----A-FS-GVEHLGGDMFD-GVPKG-DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp HHHTTCC-----C-CT-TEEEEECCTTT-CCCCC-SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHhhh-----h-cC-CCEEEecCCCC-CCCCC-CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 5542111 1 13 49999999987 55544 99988554332222333467889999999999876543
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.3e-08 Score=94.24 Aligned_cols=83 Identities=18% Similarity=0.097 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVS 420 (626)
++.+|||+|||+|.++..+ + .+|+|+|.++. . ++++.+|+.+++.+ ++||+|++
T Consensus 67 ~~~~vLDiG~G~G~~~~~l---~------~~v~~~D~s~~---------------~-~~~~~~d~~~~~~~~~~fD~v~~ 121 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSI---R------NPVHCFDLASL---------------D-PRVTVCDMAQVPLEDESVDVAVF 121 (215)
T ss_dssp TTSCEEEETCTTCHHHHHC---C------SCEEEEESSCS---------------S-TTEEESCTTSCSCCTTCEEEEEE
T ss_pred CCCeEEEECCcCCHHHHHh---h------ccEEEEeCCCC---------------C-ceEEEeccccCCCCCCCEeEEEE
Confidence 4568999999999997432 1 39999999975 3 78899999987654 68999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
...-+ .+....++..+.+.|||||.++-.
T Consensus 122 ~~~l~---~~~~~~~l~~~~~~L~~gG~l~i~ 150 (215)
T 2zfu_A 122 CLSLM---GTNIRDFLEEANRVLKPGGLLKVA 150 (215)
T ss_dssp ESCCC---SSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ehhcc---ccCHHHHHHHHHHhCCCCeEEEEE
Confidence 44322 244577899999999999987753
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.8e-08 Score=100.77 Aligned_cols=74 Identities=15% Similarity=0.156 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++ +. + .+|+|||.++.++ .++++...+++. +++++.+|+.++.. .++|+|++
T Consensus 42 ~~~~VLDiG~G~G~lt~~La---~~-~--~~v~~vDi~~~~~~~a~~~~~~~~~~--~v~~~~~D~~~~~~-~~~D~Vv~ 112 (299)
T 2h1r_A 42 SSDIVLEIGCGTGNLTVKLL---PL-A--KKVITIDIDSRMISEVKKRCLYEGYN--NLEVYEGDAIKTVF-PKFDVCTA 112 (299)
T ss_dssp TTCEEEEECCTTSTTHHHHT---TT-S--SEEEEECSCHHHHHHHHHHHHHTTCC--CEEC----CCSSCC-CCCSEEEE
T ss_pred CcCEEEEEcCcCcHHHHHHH---hc-C--CEEEEEECCHHHHHHHHHHHHHcCCC--ceEEEECchhhCCc-ccCCEEEE
Confidence 56799999999999986433 32 3 4999999999877 566665556663 59999999998876 48999999
Q ss_pred cccc
Q psy17734 421 ELLG 424 (626)
Q Consensus 421 Ellg 424 (626)
++.-
T Consensus 113 n~py 116 (299)
T 2h1r_A 113 NIPY 116 (299)
T ss_dssp ECCG
T ss_pred cCCc
Confidence 8753
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1e-07 Score=98.58 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=65.1
Q ss_pred CCCEEEEEcCCC----chHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEE-EEecccccCCCCCcc
Q psy17734 342 VVTTIMVVGAGR----GPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTI-VSEDMRTWNAPEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~Gt----G~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~v-i~~D~~~~~~p~k~D 416 (626)
++.+|||+|||+ |+=+. .+++..+...+|+|||.++. . . +|++ +++|++++..+++||
T Consensus 63 ~g~~VLDLGcGsg~~~GpGs~---~~a~~~~~~~~V~gvDis~~------------v-~-~v~~~i~gD~~~~~~~~~fD 125 (290)
T 2xyq_A 63 YNMRVIHFGAGSDKGVAPGTA---VLRQWLPTGTLLVDSDLNDF------------V-S-DADSTLIGDCATVHTANKWD 125 (290)
T ss_dssp TTCEEEEESCCCTTSBCHHHH---HHHHHSCTTCEEEEEESSCC------------B-C-SSSEEEESCGGGCCCSSCEE
T ss_pred CCCEEEEeCCCCCCCCCcHHH---HHHHHcCCCCEEEEEECCCC------------C-C-CCEEEEECccccCCccCccc
Confidence 567999999955 22221 12333442359999999986 1 2 4888 999999987778999
Q ss_pred EEEecccccc-----CCC----CCcHHHHHHHHHhcccCcEEEe
Q psy17734 417 IMVSELLGSF-----GDN----ELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 417 iIVSEllgsf-----g~~----El~pe~L~~~~r~LkpgGi~IP 451 (626)
+|+|+..... .++ +...+++..+.++|||||.++-
T Consensus 126 ~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~ 169 (290)
T 2xyq_A 126 LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAV 169 (290)
T ss_dssp EEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 9999753221 111 1134688889999999999874
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=4e-08 Score=99.64 Aligned_cols=100 Identities=11% Similarity=0.004 Sum_probs=71.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
..+|||||||+|+|+..++.. ....+|+|+|.|+.++ ++.++...++.. .++...|...-.+++++|++++-
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~----~p~a~y~a~DId~~~le~a~~~l~~~g~~---~~~~v~D~~~~~p~~~~DvaL~l 205 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGL----PAETVYIASDIDARLVGFVDEALTRLNVP---HRTNVADLLEDRLDEPADVTLLL 205 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTC----CTTCEEEEEESBHHHHHHHHHHHHHTTCC---EEEEECCTTTSCCCSCCSEEEET
T ss_pred CceeeeeccCccHHHHHHHhh----CCCCEEEEEeCCHHHHHHHHHHHHhcCCC---ceEEEeeecccCCCCCcchHHHH
Confidence 468999999999998643322 1236999999999877 777787788874 78888888877788999999985
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.+-..+..+.-...+ .+-+.|+++|++|
T Consensus 206 kti~~Le~q~kg~g~-~ll~aL~~~~vvV 233 (281)
T 3lcv_B 206 KTLPCLETQQRGSGW-EVIDIVNSPNIVV 233 (281)
T ss_dssp TCHHHHHHHSTTHHH-HHHHHSSCSEEEE
T ss_pred HHHHHhhhhhhHHHH-HHHHHhCCCCEEE
Confidence 543333222212222 4556789999866
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-08 Score=106.73 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=65.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeC----CHHHHHHHHHHHHcCCCCCcEEEEEe-cccccCCCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEK----NMSAVVGLKYKKEEQWAQSDVTIVSE-DMRTWNAPEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~----np~a~~a~~~~~~n~~~~~nV~vi~~-D~~~~~~p~k~D 416 (626)
++.+|||||||+|.++.. ++++ + +|+|||. ++..+ ....++..++ + +|+++.+ |+++++ +++||
T Consensus 82 ~g~~VLDlGcG~G~~s~~---la~~-~---~V~gvD~~~~~~~~~~-~~~~~~~~~~-~-~v~~~~~~D~~~l~-~~~fD 150 (305)
T 2p41_A 82 PEGKVVDLGCGRGGWSYY---CGGL-K---NVREVKGLTKGGPGHE-EPIPMSTYGW-N-LVRLQSGVDVFFIP-PERCD 150 (305)
T ss_dssp CCEEEEEETCTTSHHHHH---HHTS-T---TEEEEEEECCCSTTSC-CCCCCCSTTG-G-GEEEECSCCTTTSC-CCCCS
T ss_pred CCCEEEEEcCCCCHHHHH---HHhc-C---CEEEEeccccCchhHH-HHHHhhhcCC-C-CeEEEeccccccCC-cCCCC
Confidence 567999999999999854 3332 2 7999998 44221 0100111122 2 5999999 998875 47899
Q ss_pred EEEeccccccCCCCC----cHHHHHHHHHhcccCcEEEe
Q psy17734 417 IMVSELLGSFGDNEL----SPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 417 iIVSEllgsfg~~El----~pe~L~~~~r~LkpgGi~IP 451 (626)
+|+|+...+.+.... +..+|..+.++|||||.++-
T Consensus 151 ~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~ 189 (305)
T 2p41_A 151 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV 189 (305)
T ss_dssp EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred EEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 999987543221110 11367777899999998874
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.55 E-value=9.4e-08 Score=97.73 Aligned_cols=106 Identities=14% Similarity=0.035 Sum_probs=68.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH-----------------cCCCC-------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE-----------------EQWAQ------- 396 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~-----------------n~~~~------- 396 (626)
++.+|||||||+|.+.. .++...+ .+|+|||.++.++ .+++.... .+...
T Consensus 71 ~~~~vLDiGcG~G~~~~---l~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 145 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQL---LSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER 145 (289)
T ss_dssp CCSEEEEETCTTCCGGG---TTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred CCCeEEEECCCcChHHH---HhhccCC--CeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHH
Confidence 56799999999999653 2222223 4999999999887 44443211 11000
Q ss_pred ----CcEEEEEecccc-cCC------CCCccEEEeccccccCCCC--CcHHHHHHHHHhcccCcEEEec
Q psy17734 397 ----SDVTIVSEDMRT-WNA------PEKADIMVSELLGSFGDNE--LSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 397 ----~nV~vi~~D~~~-~~~------p~k~DiIVSEllgsfg~~E--l~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..++++.+|+++ ++. +++||+|++...-.....+ ....+|..+.+.|||||.++-.
T Consensus 146 ~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~ 214 (289)
T 2g72_A 146 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 214 (289)
T ss_dssp HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 016788889988 432 2469999996543332222 2356888999999999998764
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.55 E-value=1e-07 Score=98.62 Aligned_cols=93 Identities=19% Similarity=0.177 Sum_probs=64.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEE-EecccccC---CCCC-c
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIV-SEDMRTWN---APEK-A 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi-~~D~~~~~---~p~k-~ 415 (626)
++.+|||+|||||.++..+++. |+ .+|+|||.++.++ .+++. ..+ +... ..+++.+. ++.. |
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~----ga-~~V~aVDvs~~mL~~a~r~------~~r-v~~~~~~ni~~l~~~~l~~~~f 152 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQN----GA-KLVYAVDVGTNQLVWKLRQ------DDR-VRSMEQYNFRYAEPVDFTEGLP 152 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT----TC-SEEEEECSSSSCSCHHHHT------CTT-EEEECSCCGGGCCGGGCTTCCC
T ss_pred cccEEEecCCCccHHHHHHHhC----CC-CEEEEEECCHHHHHHHHHh------Ccc-cceecccCceecchhhCCCCCC
Confidence 5679999999999999654433 32 4999999999776 33331 123 5433 35666654 2444 9
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|++++... |. .+..+|..+.+.|||||.++-
T Consensus 153 D~v~~d~s--f~---sl~~vL~e~~rvLkpGG~lv~ 183 (291)
T 3hp7_A 153 SFASIDVS--FI---SLNLILPALAKILVDGGQVVA 183 (291)
T ss_dssp SEEEECCS--SS---CGGGTHHHHHHHSCTTCEEEE
T ss_pred CEEEEEee--Hh---hHHHHHHHHHHHcCcCCEEEE
Confidence 99998753 32 346789999999999998764
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.2e-07 Score=101.28 Aligned_cols=97 Identities=12% Similarity=0.124 Sum_probs=71.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..++.. +...+|+|+|.++.++ .++++...+++.+. |+++++|++++..+ +++|+||
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~----~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~-i~~~~~D~~~~~~~~~~fD~Ii 291 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALR----RYSGEIIGIEKYRKHLIGAEMNALAAGVLDK-IKFIQGDATQLSQYVDSVDFAI 291 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHT----TCCSCEEEEESCHHHHHHHHHHHHHTTCGGG-CEEEECCGGGGGGTCSCEEEEE
T ss_pred CCCEEEEccCcCcHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHHHHHHcCCCCc-eEEEECChhhCCcccCCcCEEE
Confidence 4578999999999998643332 2224899999999887 78888888888666 99999999998765 7899999
Q ss_pred eccc-cc-cCCCCCc----HHHHHHHHHhc
Q psy17734 420 SELL-GS-FGDNELS----PECLYAAQKYL 443 (626)
Q Consensus 420 SEll-gs-fg~~El~----pe~L~~~~r~L 443 (626)
+++. |. .+..+.. .++++.+.+.|
T Consensus 292 ~npPyg~r~~~~~~~~~ly~~~~~~l~r~l 321 (373)
T 3tm4_A 292 SNLPYGLKIGKKSMIPDLYMKFFNELAKVL 321 (373)
T ss_dssp EECCCC------CCHHHHHHHHHHHHHHHE
T ss_pred ECCCCCcccCcchhHHHHHHHHHHHHHHHc
Confidence 9875 21 1111222 45667777777
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=3.6e-07 Score=99.45 Aligned_cols=96 Identities=14% Similarity=0.057 Sum_probs=72.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++ +. + .+|+|||.++.++ .++++...|++. ++++.+|+.++.. .+||+||+
T Consensus 290 ~~~~VLDlgcG~G~~sl~la---~~-~--~~V~gvD~s~~ai~~A~~n~~~ngl~---v~~~~~d~~~~~~-~~fD~Vv~ 359 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLA---KR-G--FNVKGFDSNEFAIEMARRNVEINNVD---AEFEVASDREVSV-KGFDTVIV 359 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHH---HT-T--CEEEEEESCHHHHHHHHHHHHHHTCC---EEEEECCTTTCCC-TTCSEEEE
T ss_pred CCCEEEEeeccchHHHHHHH---Hc-C--CEEEEEECCHHHHHHHHHHHHHcCCc---EEEEECChHHcCc-cCCCEEEE
Confidence 45799999999999996433 32 2 4999999999887 777777778773 9999999999754 48999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
++.-. ...+++++.+. .|+|+|+++-+
T Consensus 360 dPPr~----g~~~~~~~~l~-~l~p~givyvs 386 (425)
T 2jjq_A 360 DPPRA----GLHPRLVKRLN-REKPGVIVYVS 386 (425)
T ss_dssp CCCTT----CSCHHHHHHHH-HHCCSEEEEEE
T ss_pred cCCcc----chHHHHHHHHH-hcCCCcEEEEE
Confidence 77521 12245666664 48999987643
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-07 Score=93.02 Aligned_cols=90 Identities=17% Similarity=0.128 Sum_probs=66.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSE 421 (626)
+.+|||+|||+|.++.. .++ . +++|.++.++...+.. . ++++.+|+.+++.+ ++||+|++.
T Consensus 48 ~~~vLDiG~G~G~~~~~---l~~------~-~~vD~s~~~~~~a~~~-------~-~~~~~~d~~~~~~~~~~fD~v~~~ 109 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVP---LKI------K-IGVEPSERMAEIARKR-------G-VFVLKGTAENLPLKDESFDFALMV 109 (219)
T ss_dssp SSCEEEETCTTSTTHHH---HTC------C-EEEESCHHHHHHHHHT-------T-CEEEECBTTBCCSCTTCEEEEEEE
T ss_pred CCcEEEeCCCCCHHHHH---HHH------H-hccCCCHHHHHHHHhc-------C-CEEEEcccccCCCCCCCeeEEEEc
Confidence 56899999999999742 222 3 9999999877433321 3 89999999988764 589999985
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..-... +....++..+.+.|||||.++-.
T Consensus 110 ~~l~~~--~~~~~~l~~~~~~L~pgG~l~i~ 138 (219)
T 1vlm_A 110 TTICFV--DDPERALKEAYRILKKGGYLIVG 138 (219)
T ss_dssp SCGGGS--SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred chHhhc--cCHHHHHHHHHHHcCCCcEEEEE
Confidence 322221 23467899999999999987743
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=5.2e-08 Score=104.67 Aligned_cols=95 Identities=12% Similarity=0.065 Sum_probs=66.7
Q ss_pred CCCEEEEEcCC------CchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC---
Q psy17734 342 VVTTIMVVGAG------RGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP--- 412 (626)
Q Consensus 342 ~~~~VLDvG~G------tG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p--- 412 (626)
+..+||||||| +|..+...+ ++...+.+|+|||.++.+. . ... +|+++++|+.+++..
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la---~~~fP~a~V~GVDiSp~m~-------~--~~~-rI~fv~GDa~dlpf~~~l 282 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMW---KSFFPRGQIYGLDIMDKSH-------V--DEL-RIRTIQGDQNDAEFLDRI 282 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHH---HHHCTTCEEEEEESSCCGG-------G--CBT-TEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHH---HHhCCCCEEEEEECCHHHh-------h--cCC-CcEEEEecccccchhhhh
Confidence 45799999999 776664333 2221225999999998752 1 123 499999999987543
Q ss_pred ----CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 413 ----EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 413 ----~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
++||+|++..... .+.....|..+.+.|||||+++-.
T Consensus 283 ~~~d~sFDlVisdgsH~---~~d~~~aL~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 283 ARRYGPFDIVIDDGSHI---NAHVRTSFAALFPHVRPGGLYVIE 323 (419)
T ss_dssp HHHHCCEEEEEECSCCC---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred hcccCCccEEEECCccc---chhHHHHHHHHHHhcCCCeEEEEE
Confidence 7899999964321 122356788889999999998854
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.52 E-value=6.2e-08 Score=92.60 Aligned_cols=95 Identities=15% Similarity=0.122 Sum_probs=64.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCc--------cEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEE-EecccccCC-
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRK--------VRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIV-SEDMRTWNA- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~--------~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi-~~D~~~~~~- 411 (626)
++.+|||+|||+|.++..+++. .+.. .+|+|+|.++++ .. . +++++ .+|+.+...
T Consensus 22 ~~~~vLDlGcG~G~~~~~la~~---~~~~~~~~~~~~~~v~~vD~s~~~----------~~-~-~~~~~~~~d~~~~~~~ 86 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAVQK---VNAAGTDPSSPVGFVLGVDLLHIF----------PL-E-GATFLCPADVTDPRTS 86 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHHHH---TTTTCCCTTSCCCEEEEECSSCCC----------CC-T-TCEEECSCCTTSHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHH---hccccccccCCCceEEEEechhcc----------cC-C-CCeEEEeccCCCHHHH
Confidence 5679999999999998654433 3321 499999999842 12 2 48999 999876531
Q ss_pred --------CCCccEEEeccccccCCCCCc---------HHHHHHHHHhcccCcEEEe
Q psy17734 412 --------PEKADIMVSELLGSFGDNELS---------PECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 412 --------p~k~DiIVSEllgsfg~~El~---------pe~L~~~~r~LkpgGi~IP 451 (626)
.++||+|+|...-........ ..++..+.+.|||||.++-
T Consensus 87 ~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 143 (196)
T 2nyu_A 87 QRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLC 143 (196)
T ss_dssp HHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 258999999653221111111 2567788899999999874
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.8e-07 Score=98.03 Aligned_cols=101 Identities=8% Similarity=0.126 Sum_probs=76.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhc----------------------------------CCccEEEEEeCCHHHH-HHH
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEA----------------------------------NRKVRVYAVEKNMSAV-VGL 386 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~----------------------------------g~~~~V~AVE~np~a~-~a~ 386 (626)
++..|+|.+||+|.+...++..+... ..+.+|+|+|.++.++ .++
T Consensus 194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar 273 (384)
T 3ldg_A 194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR 273 (384)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence 45689999999999997776655421 1124699999999887 888
Q ss_pred HHHHHcCCCCCcEEEEEecccccCCCCCccEEEeccccccCCC----CCcHHHHHHHHHhccc
Q psy17734 387 KYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDN----ELSPECLYAAQKYLKE 445 (626)
Q Consensus 387 ~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~----El~pe~L~~~~r~Lkp 445 (626)
+++..+++.+. |+++++|+.++..+.++|+||+++. ||.. +...++...+.+.||+
T Consensus 274 ~Na~~~gl~~~-I~~~~~D~~~l~~~~~fD~Iv~NPP--YG~rl~~~~~l~~ly~~lg~~lk~ 333 (384)
T 3ldg_A 274 KNAREVGLEDV-VKLKQMRLQDFKTNKINGVLISNPP--YGERLLDDKAVDILYNEMGETFAP 333 (384)
T ss_dssp HHHHHTTCTTT-EEEEECCGGGCCCCCCSCEEEECCC--CTTTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCc-eEEEECChHHCCccCCcCEEEECCc--hhhccCCHHHHHHHHHHHHHHHhh
Confidence 88888999887 9999999999988789999999985 2221 1123344555666765
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.3e-07 Score=93.21 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=71.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
...+|||||||+|+|+...+ .+ .+|+|+|+++.++ .+.+....++. +..+..+|...-.+++++|++++
T Consensus 105 ~p~~VLDlGCG~gpLal~~~-----~~--~~y~a~DId~~~i~~ar~~~~~~g~---~~~~~v~D~~~~~~~~~~DvvLl 174 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER-----GI--ASVWGCDIHQGLGDVITPFAREKDW---DFTFALQDVLCAPPAEAGDLALI 174 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT-----TC--SEEEEEESBHHHHHHHHHHHHHTTC---EEEEEECCTTTSCCCCBCSEEEE
T ss_pred CCCeEEEecCCccHHHHHhc-----cC--CeEEEEeCCHHHHHHHHHHHHhcCC---CceEEEeecccCCCCCCcchHHH
Confidence 45699999999999996433 12 5999999999877 66666666775 58999999998888899999988
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
-.+-..+..+.-...+ .+-+.|+++|++|
T Consensus 175 lk~lh~LE~q~~~~~~-~ll~aL~~~~vvV 203 (253)
T 3frh_A 175 FKLLPLLEREQAGSAM-ALLQSLNTPRMAV 203 (253)
T ss_dssp ESCHHHHHHHSTTHHH-HHHHHCBCSEEEE
T ss_pred HHHHHHhhhhchhhHH-HHHHHhcCCCEEE
Confidence 5443333222222233 4445789999866
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=8.6e-07 Score=96.60 Aligned_cols=95 Identities=16% Similarity=0.088 Sum_probs=69.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC----C-CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN----A-PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~----~-p~k~ 415 (626)
++.+|||+|||+|.++..+ ++. + .+|+|+|.++.++ .++++...+++. |++++.+|+.+.- . .++|
T Consensus 286 ~~~~VLDlgcG~G~~~~~l---a~~-~--~~V~gvD~s~~al~~A~~n~~~~~~~--~v~f~~~d~~~~l~~~~~~~~~f 357 (433)
T 1uwv_A 286 PEDRVLDLFCGMGNFTLPL---ATQ-A--ASVVGVEGVPALVEKGQQNARLNGLQ--NVTFYHENLEEDVTKQPWAKNGF 357 (433)
T ss_dssp TTCEEEEESCTTTTTHHHH---HTT-S--SEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEECCTTSCCSSSGGGTTCC
T ss_pred CCCEEEECCCCCCHHHHHH---Hhh-C--CEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEECCHHHHhhhhhhhcCCC
Confidence 4578999999999999643 332 2 4999999999887 777777788876 5999999998842 1 2579
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|+||+++.-. ...++++.+.+ ++|+++++
T Consensus 358 D~Vv~dPPr~-----g~~~~~~~l~~-~~p~~ivy 386 (433)
T 1uwv_A 358 DKVLLDPARA-----GAAGVMQQIIK-LEPIRIVY 386 (433)
T ss_dssp SEEEECCCTT-----CCHHHHHHHHH-HCCSEEEE
T ss_pred CEEEECCCCc-----cHHHHHHHHHh-cCCCeEEE
Confidence 9999987532 22345555433 67877754
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.3e-07 Score=90.23 Aligned_cols=93 Identities=19% Similarity=0.211 Sum_probs=66.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC--CC-CCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN--AP-EKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p-~k~DiI 418 (626)
++.+|||+|||+|.++..+ ++. + .+|+++|.++.+....+. . ..+++.+|+.+.. .+ ++||+|
T Consensus 32 ~~~~vLdiG~G~G~~~~~l---~~~-~--~~~~~~D~~~~~~~~~~~----~----~~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAI---KEN-G--TRVSGIEAFPEAAEQAKE----K----LDHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp TCSEEEEETCTTSHHHHHH---HTT-T--CEEEEEESSHHHHHHHHT----T----SSEEEESCTTTCCCCSCTTCEEEE
T ss_pred CCCcEEEeCCCCCHHHHHH---Hhc-C--CeEEEEeCCHHHHHHHHH----h----CCcEEEcchhhcCCCCCCCccCEE
Confidence 5679999999999998543 332 3 499999999977633321 1 1478899998743 32 689999
Q ss_pred Eecc-ccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 419 VSEL-LGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 419 VSEl-lgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
++.. +.++ ....+++..+.+.|||||.++-
T Consensus 98 ~~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~~ 128 (230)
T 3cc8_A 98 IFGDVLEHL---FDPWAVIEKVKPYIKQNGVILA 128 (230)
T ss_dssp EEESCGGGS---SCHHHHHHHTGGGEEEEEEEEE
T ss_pred EECChhhhc---CCHHHHHHHHHHHcCCCCEEEE
Confidence 9843 2222 1235788999999999998774
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.7e-07 Score=99.69 Aligned_cols=128 Identities=18% Similarity=0.223 Sum_probs=79.2
Q ss_pred HHHHhhCCHHHHHHHHHHHHH-------HHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCH
Q psy17734 308 TYEVFEKDPIKYIRYQEAVQQ-------ALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNM 380 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI~~-------al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np 380 (626)
.|+.+.+|+.....|.+++.. .+.+... ...+..+|||||||+|.++..+++... ..+++++|. +
T Consensus 171 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~---~~~~~~~vLDvG~G~G~~~~~l~~~~~----~~~~~~~D~-~ 242 (372)
T 1fp1_D 171 KYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT---GFEGISTLVDVGGGSGRNLELIISKYP----LIKGINFDL-P 242 (372)
T ss_dssp ---CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC---TTTTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEEC-H
T ss_pred HHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhh---ccCCCCEEEEeCCCCcHHHHHHHHHCC----CCeEEEeCh-H
Confidence 455556676666666555432 1222211 012457999999999999865544332 258999999 7
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 381 SAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 381 ~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.++...+ .. . +|+++.+|+.+ +.|. +|+|++...-+....+....+|..+.+.|||||.++-.
T Consensus 243 ~~~~~a~-----~~-~-~v~~~~~d~~~-~~~~-~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~ 305 (372)
T 1fp1_D 243 QVIENAP-----PL-S-GIEHVGGDMFA-SVPQ-GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIV 305 (372)
T ss_dssp HHHTTCC-----CC-T-TEEEEECCTTT-CCCC-EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHhhh-----hc-C-CCEEEeCCccc-CCCC-CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 5552111 12 3 49999999988 5555 99998844322222221236888999999999987754
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=3.4e-07 Score=97.41 Aligned_cols=129 Identities=19% Similarity=0.186 Sum_probs=80.3
Q ss_pred HHHHhhCCHHHHHHHHHHHHH-------HHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCH
Q psy17734 308 TYEVFEKDPIKYIRYQEAVQQ-------ALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNM 380 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI~~-------al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np 380 (626)
.|+.+..++.....|.+++.. .+.+.+. ...+..+|||||||+|.++..++++.. + .+++++|. |
T Consensus 163 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~---~~~~~~~vlDvG~G~G~~~~~l~~~~p--~--~~~~~~D~-~ 234 (364)
T 3p9c_A 163 AFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYH---GFEGLGTLVDVGGGVGATVAAIAAHYP--T--IKGVNFDL-P 234 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC---TTTTCSEEEEETCTTSHHHHHHHHHCT--T--CEEEEEEC-H
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhcc---cccCCCEEEEeCCCCCHHHHHHHHHCC--C--CeEEEecC-H
Confidence 455556666555555444332 2222221 022457999999999999865444332 2 58999999 6
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 381 SAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 381 ~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
.++...+ . .++ |+++.+|+.+ +.|.. |+|++...-+....+....+|..+.+.|||||.++-..
T Consensus 235 ~~~~~a~-----~-~~~-v~~~~~D~~~-~~p~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 235 HVISEAP-----Q-FPG-VTHVGGDMFK-EVPSG-DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp HHHTTCC-----C-CTT-EEEEECCTTT-CCCCC-SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHhhh-----h-cCC-eEEEeCCcCC-CCCCC-CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 5441111 1 144 9999999988 66654 99987543322222333567889999999999876543
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.46 E-value=2.9e-07 Score=97.05 Aligned_cols=106 Identities=19% Similarity=0.222 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhc-CCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEA-NRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~-g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIV 419 (626)
++.+|||+|||+|.+...+++..... +...+|+|+|.++.++ .++.++..++. . ++++++|..+....++||+||
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~-~~i~~~D~l~~~~~~~fD~Ii 206 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--K-MTLLHQDGLANLLVDPVDVVI 206 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--C-CEEEESCTTSCCCCCCEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--C-ceEEECCCCCccccCCccEEE
Confidence 45789999999999987665554321 1125899999999877 77777666666 3 899999987755557899999
Q ss_pred eccc-cccCCC-----------CC-c---HHHHHHHHHhcccCcEEE
Q psy17734 420 SELL-GSFGDN-----------EL-S---PECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEll-gsfg~~-----------El-~---pe~L~~~~r~LkpgGi~I 450 (626)
+++. |++... .. . ..++..+.+.|||||.++
T Consensus 207 ~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~ 253 (344)
T 2f8l_A 207 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLF 253 (344)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEE
T ss_pred ECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEE
Confidence 9975 332110 01 1 146788889999999644
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.7e-07 Score=99.43 Aligned_cols=101 Identities=7% Similarity=0.105 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhc----------------------------------CCccEEEEEeCCHHHH-HHH
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEA----------------------------------NRKVRVYAVEKNMSAV-VGL 386 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~----------------------------------g~~~~V~AVE~np~a~-~a~ 386 (626)
++..|||.|||+|.+...++..+... ..+.+|+|+|.++.++ .++
T Consensus 201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar 280 (393)
T 3k0b_A 201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK 280 (393)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence 45689999999999987776655421 1124699999999887 888
Q ss_pred HHHHHcCCCCCcEEEEEecccccCCCCCccEEEeccccccCCCC----CcHHHHHHHHHhccc
Q psy17734 387 KYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNE----LSPECLYAAQKYLKE 445 (626)
Q Consensus 387 ~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~E----l~pe~L~~~~r~Lkp 445 (626)
+++..+++.+. |+++++|+.++..+.++|+||+++. |+..- ...++...+.+.||+
T Consensus 281 ~Na~~~gl~~~-I~~~~~D~~~~~~~~~fD~Iv~NPP--Yg~rl~~~~~l~~ly~~lg~~lk~ 340 (393)
T 3k0b_A 281 QNAVEAGLGDL-ITFRQLQVADFQTEDEYGVVVANPP--YGERLEDEEAVRQLYREMGIVYKR 340 (393)
T ss_dssp HHHHHTTCTTC-SEEEECCGGGCCCCCCSCEEEECCC--CCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCc-eEEEECChHhCCCCCCCCEEEECCC--CccccCCchhHHHHHHHHHHHHhc
Confidence 88888999877 9999999999988789999999975 32211 122334445566665
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=2.3e-07 Score=104.61 Aligned_cols=75 Identities=7% Similarity=0.087 Sum_probs=56.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC---CCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---APEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---~p~k~Di 417 (626)
++.+|||||||.|.++..+++ .| .+|+|||.++.++ +|+.....++.. +|++.+++++++. .+++||+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~----~g--a~V~giD~~~~~i~~a~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~fD~ 137 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLAS----KG--ATIVGIDFQQENINVCRALAEENPDF--AAEFRVGRIEEVIAALEEGEFDL 137 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHH----TT--CEEEEEESCHHHHHHHHHHHHTSTTS--EEEEEECCHHHHHHHCCTTSCSE
T ss_pred CCCeEEEECCCCcHHHHHHHh----CC--CEEEEECCCHHHHHHHHHHHHhcCCC--ceEEEECCHHHHhhhccCCCccE
Confidence 357899999999999864433 34 3999999999877 666665556543 6999999999872 3478999
Q ss_pred EEe-cccc
Q psy17734 418 MVS-ELLG 424 (626)
Q Consensus 418 IVS-Ellg 424 (626)
|++ |.+.
T Consensus 138 v~~~e~~e 145 (569)
T 4azs_A 138 AIGLSVFH 145 (569)
T ss_dssp EEEESCHH
T ss_pred EEECcchh
Confidence 988 4443
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.41 E-value=5e-07 Score=97.08 Aligned_cols=101 Identities=6% Similarity=0.147 Sum_probs=75.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhc----------------------------------CCccEEEEEeCCHHHH-HHH
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEA----------------------------------NRKVRVYAVEKNMSAV-VGL 386 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~----------------------------------g~~~~V~AVE~np~a~-~a~ 386 (626)
++..|||.|||+|.+...++..+... ..+.+|+|+|.++.++ .++
T Consensus 195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar 274 (385)
T 3ldu_A 195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR 274 (385)
T ss_dssp TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence 45789999999999987776665321 1124799999999887 888
Q ss_pred HHHHHcCCCCCcEEEEEecccccCCCCCccEEEeccccccCCCC----CcHHHHHHHHHhccc
Q psy17734 387 KYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNE----LSPECLYAAQKYLKE 445 (626)
Q Consensus 387 ~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~E----l~pe~L~~~~r~Lkp 445 (626)
++...++..+. |+++++|+.++..++++|+||+++. |+..- ...++...+.+.||+
T Consensus 275 ~Na~~~gl~~~-i~~~~~D~~~l~~~~~~D~Iv~NPP--yg~rl~~~~~l~~ly~~lg~~lk~ 334 (385)
T 3ldu_A 275 ENAEIAGVDEY-IEFNVGDATQFKSEDEFGFIITNPP--YGERLEDKDSVKQLYKELGYAFRK 334 (385)
T ss_dssp HHHHHHTCGGG-EEEEECCGGGCCCSCBSCEEEECCC--CCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCc-eEEEECChhhcCcCCCCcEEEECCC--CcCccCCHHHHHHHHHHHHHHHhh
Confidence 88888998776 9999999999988889999999986 32111 122344455566775
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=4.4e-07 Score=95.74 Aligned_cols=131 Identities=15% Similarity=0.173 Sum_probs=79.7
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHhh---ccCCC-cCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH
Q psy17734 308 TYEVFEKDPIKYIRYQEAVQQALLD---RVSPE-QADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV 383 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI~~al~d---~~~~~-~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~ 383 (626)
.|+.+.+|+.....|.+++...... .+... ....+..+|||||||+|.++..+++.. .+ .+++++|. +.++
T Consensus 150 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~--p~--~~~~~~D~-~~~~ 224 (352)
T 1fp2_A 150 FWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETF--PK--LKCIVFDR-PQVV 224 (352)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHHHTTCSEEEEETCTTSHHHHHHHHHC--TT--CEEEEEEC-HHHH
T ss_pred HHHHHHhChHHHHHHHHHHHhcchhhhhHHHhcccccccCceEEEeCCCccHHHHHHHHHC--CC--CeEEEeeC-HHHH
Confidence 4555666766666665554321100 00000 001245799999999999986544332 12 58999999 7665
Q ss_pred HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEeccccccCCCCCcHHHHHHHHHhccc---CcEEEec
Q psy17734 384 VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKE---DGISIPY 452 (626)
Q Consensus 384 ~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~Lkp---gGi~IP~ 452 (626)
...+ .. . +|+++.+|+.+ ..|. +|+|++...-+....+....+|..+.+.||| ||.++-.
T Consensus 225 ~~a~-----~~-~-~v~~~~~d~~~-~~p~-~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~ 287 (352)
T 1fp2_A 225 ENLS-----GS-N-NLTYVGGDMFT-SIPN-ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTII 287 (352)
T ss_dssp TTCC-----CB-T-TEEEEECCTTT-CCCC-CSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred hhcc-----cC-C-CcEEEeccccC-CCCC-ccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 2111 12 2 49999999977 5554 9999885432222222223688899999999 9987644
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.3e-07 Score=96.87 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=67.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CC-------
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--AP------- 412 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p------- 412 (626)
+.+|||+|||+|.++.. +++. + .+|+|||.|+.++ .++++.+.|+.. ||+++.+|+.++. ..
T Consensus 214 ~~~vLDl~cG~G~~~l~---la~~-~--~~V~gvd~~~~ai~~a~~n~~~ng~~--~v~~~~~d~~~~~~~~~~~~~~~~ 285 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLA---LARN-F--DRVLATEIAKPSVAAAQYNIAANHID--NVQIIRMAAEEFTQAMNGVREFNR 285 (369)
T ss_dssp CSEEEEESCTTSHHHHH---HGGG-S--SEEEEECCCHHHHHHHHHHHHHTTCC--SEEEECCCSHHHHHHHSSCCCCTT
T ss_pred CCEEEEccCCCCHHHHH---HHhc-C--CEEEEEECCHHHHHHHHHHHHHcCCC--ceEEEECCHHHHHHHHhhcccccc
Confidence 46799999999999963 3332 2 3999999999887 777888888884 5999999998752 11
Q ss_pred --------CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 413 --------EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 413 --------~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
.+||+||.++.-. + ... .+.+.|+++|.++-
T Consensus 286 l~~~~~~~~~fD~Vv~dPPr~-g---~~~----~~~~~l~~~g~ivy 324 (369)
T 3bt7_A 286 LQGIDLKSYQCETIFVDPPRS-G---LDS----ETEKMVQAYPRILY 324 (369)
T ss_dssp GGGSCGGGCCEEEEEECCCTT-C---CCH----HHHHHHTTSSEEEE
T ss_pred ccccccccCCCCEEEECcCcc-c---cHH----HHHHHHhCCCEEEE
Confidence 2799999987532 2 112 33455668887763
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.40 E-value=6.2e-07 Score=97.55 Aligned_cols=108 Identities=19% Similarity=0.075 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CC-CCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--AP-EKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p-~k~Di 417 (626)
++.+|||+|||+|..+..++... +. .+|+|+|.++.+. .+.++...++. +++++.+|+.++. .+ ++||+
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~---~~-~~v~a~D~~~~~l~~~~~~~~~~g~---~~~~~~~D~~~~~~~~~~~~fD~ 318 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVA---PE-AQVVAVDIDEQRLSRVYDNLKRLGM---KATVKQGDGRYPSQWCGEQQFDR 318 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHC---TT-CEEEEEESSTTTHHHHHHHHHHTTC---CCEEEECCTTCTHHHHTTCCEEE
T ss_pred CcCeEEEECCCchHHHHHHHHHc---CC-CEEEEECCCHHHHHHHHHHHHHcCC---CeEEEeCchhhchhhcccCCCCE
Confidence 56799999999999996544433 21 5999999999766 66777777776 3899999998875 23 68999
Q ss_pred EEeccccc----cCCCCCc----------------HHHHHHHHHhcccCcEEEecccee
Q psy17734 418 MVSELLGS----FGDNELS----------------PECLYAAQKYLKEDGISIPYNYTS 456 (626)
Q Consensus 418 IVSEllgs----fg~~El~----------------pe~L~~~~r~LkpgGi~IP~~~t~ 456 (626)
|+++..-+ +..+... .++|+.+.++|||||.++-..++.
T Consensus 319 Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 319 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred EEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 99876421 1111110 256788889999999998655443
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.6e-07 Score=98.28 Aligned_cols=95 Identities=20% Similarity=0.263 Sum_probs=67.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++.++++. .+...+|+|+|.++.+. .+ .+ ++++++|+.++...++||+||+
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~---~~~~~~i~gvDi~~~~~~~a----------~~-~~~~~~D~~~~~~~~~fD~Ii~ 104 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREA---HGTAYRFVGVEIDPKALDLP----------PW-AEGILADFLLWEPGEAFDLILG 104 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHH---HCSCSEEEEEESCTTTCCCC----------TT-EEEEESCGGGCCCSSCEEEEEE
T ss_pred CCCEEEECCCCChHHHHHHHHH---hCCCCeEEEEECCHHHHHhC----------CC-CcEEeCChhhcCccCCCCEEEE
Confidence 3459999999999998654433 21125999999999776 32 34 9999999999876689999999
Q ss_pred ccccc-cCCC--------------------------CCcHHHHHHHHHhcccCcEEE
Q psy17734 421 ELLGS-FGDN--------------------------ELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgs-fg~~--------------------------El~pe~L~~~~r~LkpgGi~I 450 (626)
++.-. .... +....++..+.++|+|||.++
T Consensus 105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~ 161 (421)
T 2ih2_A 105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLV 161 (421)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEE
T ss_pred CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEE
Confidence 86421 1110 001245777888999999743
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.8e-06 Score=89.99 Aligned_cols=77 Identities=6% Similarity=0.055 Sum_probs=60.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC----CCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP----EKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p----~k~D 416 (626)
++.+|||+|||+|..+..++... +.+.+|+|+|.++.++ .+++++++++.. ||+++++|++++... .+||
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~---~~~g~V~a~D~~~~~l~~~~~n~~r~g~~--~v~~~~~D~~~~~~~~~~~~~fD 176 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALL---KNQGKIFAFDLDAKRLASMATLLARAGVS--CCELAEEDFLAVSPSDPRYHEVH 176 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHH---TTCSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEECCGGGSCTTCGGGTTEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHh---CCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeCChHhcCccccccCCCC
Confidence 56799999999999996544432 2225999999999876 777777778875 599999999987542 4799
Q ss_pred EEEeccc
Q psy17734 417 IMVSELL 423 (626)
Q Consensus 417 iIVSEll 423 (626)
.|+.+..
T Consensus 177 ~Vl~D~P 183 (309)
T 2b9e_A 177 YILLDPS 183 (309)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9998754
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=7.8e-08 Score=103.69 Aligned_cols=99 Identities=13% Similarity=0.106 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++. .+ .+|+|+|.++.+....+. .+.......+...+.+++.. .++||+|++
T Consensus 107 ~~~~VLDiGcG~G~~~~~l~~----~g--~~v~gvD~s~~~~~~a~~---~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~ 177 (416)
T 4e2x_A 107 PDPFIVEIGCNDGIMLRTIQE----AG--VRHLGFEPSSGVAAKARE---KGIRVRTDFFEKATADDVRRTEGPANVIYA 177 (416)
T ss_dssp SSCEEEEETCTTTTTHHHHHH----TT--CEEEEECCCHHHHHHHHT---TTCCEECSCCSHHHHHHHHHHHCCEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHH----cC--CcEEEECCCHHHHHHHHH---cCCCcceeeechhhHhhcccCCCCEEEEEE
Confidence 567999999999999864332 23 499999999977733322 23321101122344444443 278999998
Q ss_pred cc-ccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 EL-LGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 El-lgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.. +.++ +....++..+.+.|||||+++-.
T Consensus 178 ~~vl~h~---~d~~~~l~~~~r~LkpgG~l~i~ 207 (416)
T 4e2x_A 178 ANTLCHI---PYVQSVLEGVDALLAPDGVFVFE 207 (416)
T ss_dssp ESCGGGC---TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred CChHHhc---CCHHHHHHHHHHHcCCCeEEEEE
Confidence 43 3333 23467899999999999998743
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.1e-07 Score=95.12 Aligned_cols=93 Identities=13% Similarity=0.136 Sum_probs=57.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEE-ecccccC---CCC-Cc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVS-EDMRTWN---APE-KA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~-~D~~~~~---~p~-k~ 415 (626)
++.+|||||||||.++..+++. |+ .+|+|||.++.++ .+++.. .+ +.... .+++.+. .+. .+
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~----g~-~~V~gvDis~~ml~~a~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~ 104 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQN----GA-KLVYALDVGTNQLAWKIRSD------ER-VVVMEQFNFRNAVLADFEQGRP 104 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT----TC-SEEEEECSSCCCCCHHHHTC------TT-EEEECSCCGGGCCGGGCCSCCC
T ss_pred CCCEEEEEccCCCHHHHHHHhc----CC-CEEEEEcCCHHHHHHHHHhC------cc-ccccccceEEEeCHhHcCcCCC
Confidence 5679999999999998654332 33 3999999999776 434321 11 32221 1222221 112 24
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|.+.....-. ....++..+.+.|||||.++-
T Consensus 105 d~~~~D~v~~-----~l~~~l~~i~rvLkpgG~lv~ 135 (232)
T 3opn_A 105 SFTSIDVSFI-----SLDLILPPLYEILEKNGEVAA 135 (232)
T ss_dssp SEEEECCSSS-----CGGGTHHHHHHHSCTTCEEEE
T ss_pred CEEEEEEEhh-----hHHHHHHHHHHhccCCCEEEE
Confidence 6555543211 126688999999999998775
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-06 Score=92.60 Aligned_cols=132 Identities=12% Similarity=0.157 Sum_probs=81.2
Q ss_pred HHHhhCCHHHHHHHHHHHHH-------HHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHH
Q psy17734 309 YEVFEKDPIKYIRYQEAVQQ-------ALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMS 381 (626)
Q Consensus 309 Ye~fe~D~~ry~~Y~~AI~~-------al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~ 381 (626)
|+.+.+++.....|.+++.. .+.+.. +..+..+|+|||||+|.++..++++. ...+++..|.-+.
T Consensus 143 ~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~----~~~~~~~v~DvGgG~G~~~~~l~~~~----p~~~~~~~dlp~v 214 (353)
T 4a6d_A 143 FTAIYRSEGERLQFMQALQEVWSVNGRSVLTAF----DLSVFPLMCDLGGGAGALAKECMSLY----PGCKITVFDIPEV 214 (353)
T ss_dssp HHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSS----CGGGCSEEEEETCTTSHHHHHHHHHC----SSCEEEEEECHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhc----CcccCCeEEeeCCCCCHHHHHHHHhC----CCceeEeccCHHH
Confidence 45555666665556555432 122111 11245689999999999986544432 2258888887333
Q ss_pred HHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec-cccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 382 AVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE-LLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 382 a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE-llgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
...+++.....+ .++ |+++.+|+.+-+. ..+|+++.- .+..+.+ +....+|..+.+.|+|||.++-.
T Consensus 215 ~~~a~~~~~~~~-~~r-v~~~~gD~~~~~~-~~~D~~~~~~vlh~~~d-~~~~~iL~~~~~al~pgg~lli~ 282 (353)
T 4a6d_A 215 VWTAKQHFSFQE-EEQ-IDFQEGDFFKDPL-PEADLYILARVLHDWAD-GKCSHLLERIYHTCKPGGGILVI 282 (353)
T ss_dssp HHHHHHHSCC---CCS-EEEEESCTTTSCC-CCCSEEEEESSGGGSCH-HHHHHHHHHHHHHCCTTCEEEEE
T ss_pred HHHHHHhhhhcc-cCc-eeeecCccccCCC-CCceEEEeeeecccCCH-HHHHHHHHHHHhhCCCCCEEEEE
Confidence 335555543333 566 9999999987544 468998763 3433322 22356788999999999976643
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.4e-06 Score=87.59 Aligned_cols=106 Identities=12% Similarity=0.051 Sum_probs=66.7
Q ss_pred CCCEEEEEcCCC---chHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC------
Q psy17734 342 VVTTIMVVGAGR---GPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA------ 411 (626)
Q Consensus 342 ~~~~VLDvG~Gt---G~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~------ 411 (626)
+...|||||||+ |.+... ++.. ....+|++||.+|.++ .+++.+.... .+ +++++++|++++..
T Consensus 78 g~~q~LDLGcG~pT~~~~~~l-a~~~---~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~-~~~~v~aD~~~~~~~l~~~~ 151 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEI-AQSV---APESRVVYVDNDPIVLTLSQGLLASTP-EG-RTAYVEADMLDPASILDAPE 151 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHH-HHHH---CTTCEEEEEECCHHHHHTTHHHHCCCS-SS-EEEEEECCTTCHHHHHTCHH
T ss_pred CCCEEEEeCCCCCcccHHHHH-HHHH---CCCCEEEEEeCChHHHHHHHHHhccCC-CC-cEEEEEecccChhhhhcccc
Confidence 346899999997 344322 2211 1225999999999877 5554443222 23 49999999998621
Q ss_pred -CCCcc-----EEEeccccccCCCCC-cHHHHHHHHHhcccCcEEEecc
Q psy17734 412 -PEKAD-----IMVSELLGSFGDNEL-SPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 412 -p~k~D-----iIVSEllgsfg~~El-~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
.+.+| .|++..+-+|+..+. ...++..+.+.|+|||.++-..
T Consensus 152 ~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 152 LRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp HHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred cccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 12233 355544334443332 3568889999999999988553
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-06 Score=95.78 Aligned_cols=108 Identities=15% Similarity=0.107 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcC---------CccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEAN---------RKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g---------~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~ 411 (626)
++.+|+|.|||+|.+...+++...... ...+++|+|+++.+. .|+.++..++....++.++++|......
T Consensus 171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~ 250 (445)
T 2okc_A 171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP 250 (445)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence 456899999999999876555432100 014899999999877 7777776677753128899999987766
Q ss_pred CCCccEEEeccccccC-CCCC--------------cHHHHHHHHHhcccCcEE
Q psy17734 412 PEKADIMVSELLGSFG-DNEL--------------SPECLYAAQKYLKEDGIS 449 (626)
Q Consensus 412 p~k~DiIVSEllgsfg-~~El--------------~pe~L~~~~r~LkpgGi~ 449 (626)
..+||+||+++.-... ..+. ...++..+.+.|||||.+
T Consensus 251 ~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~ 303 (445)
T 2okc_A 251 STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRA 303 (445)
T ss_dssp SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEE
Confidence 5699999998742111 1000 025678888999999865
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=9.1e-07 Score=91.75 Aligned_cols=72 Identities=21% Similarity=0.300 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCC-CccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPE-KADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~-k~DiIV 419 (626)
++.+|||||||+|.++..+++.+ .+|+|||.++.++ .+++... +. + |++++++|+.++..+. ++|.||
T Consensus 50 ~~~~VLEIG~G~G~lT~~La~~~------~~V~aVEid~~li~~a~~~~~--~~-~-~v~vi~gD~l~~~~~~~~fD~Iv 119 (295)
T 3gru_A 50 KDDVVLEIGLGKGILTEELAKNA------KKVYVIEIDKSLEPYANKLKE--LY-N-NIEIIWGDALKVDLNKLDFNKVV 119 (295)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS------SEEEEEESCGGGHHHHHHHHH--HC-S-SEEEEESCTTTSCGGGSCCSEEE
T ss_pred CcCEEEEECCCchHHHHHHHhcC------CEEEEEECCHHHHHHHHHHhc--cC-C-CeEEEECchhhCCcccCCccEEE
Confidence 56799999999999997655432 3999999999777 4444443 22 2 5999999999887653 699999
Q ss_pred eccc
Q psy17734 420 SELL 423 (626)
Q Consensus 420 SEll 423 (626)
+++.
T Consensus 120 ~NlP 123 (295)
T 3gru_A 120 ANLP 123 (295)
T ss_dssp EECC
T ss_pred EeCc
Confidence 9865
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-06 Score=86.95 Aligned_cols=71 Identities=13% Similarity=0.223 Sum_probs=52.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCC--CccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPE--KADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~--k~DiI 418 (626)
++.+|||+|||+|.++..++..+ .+|+|||.++.++ .+++... .. + +++++++|+.++..+. .+ .|
T Consensus 30 ~~~~VLDiG~G~G~lt~~l~~~~------~~v~~vD~~~~~~~~a~~~~~--~~-~-~v~~~~~D~~~~~~~~~~~~-~v 98 (244)
T 1qam_A 30 EHDNIFEIGSGKGHFTLELVQRC------NFVTAIEIDHKLCKTTENKLV--DH-D-NFQVLNKDILQFKFPKNQSY-KI 98 (244)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS------SEEEEECSCHHHHHHHHHHTT--TC-C-SEEEECCCGGGCCCCSSCCC-EE
T ss_pred CCCEEEEEeCCchHHHHHHHHcC------CeEEEEECCHHHHHHHHHhhc--cC-C-CeEEEEChHHhCCcccCCCe-EE
Confidence 56799999999999997554432 3999999999887 4444332 22 3 4999999999987653 34 67
Q ss_pred Eeccc
Q psy17734 419 VSELL 423 (626)
Q Consensus 419 VSEll 423 (626)
|+++.
T Consensus 99 v~nlP 103 (244)
T 1qam_A 99 FGNIP 103 (244)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 78765
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.5e-06 Score=88.22 Aligned_cols=73 Identities=25% Similarity=0.298 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-----CCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-----EKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-----~k~D 416 (626)
++.+|||||||+|.++..++ +. + .+|+|||.++.++..++..... .+ +++++++|+.+++.+ +++|
T Consensus 29 ~~~~VLEIG~G~G~lt~~La---~~-~--~~V~avEid~~~~~~~~~~~~~--~~-~v~~i~~D~~~~~~~~~~~~~~~~ 99 (255)
T 3tqs_A 29 KTDTLVEIGPGRGALTDYLL---TE-C--DNLALVEIDRDLVAFLQKKYNQ--QK-NITIYQNDALQFDFSSVKTDKPLR 99 (255)
T ss_dssp TTCEEEEECCTTTTTHHHHT---TT-S--SEEEEEECCHHHHHHHHHHHTT--CT-TEEEEESCTTTCCGGGSCCSSCEE
T ss_pred CcCEEEEEcccccHHHHHHH---Hh-C--CEEEEEECCHHHHHHHHHHHhh--CC-CcEEEEcchHhCCHHHhccCCCeE
Confidence 56799999999999996433 32 2 3999999999887444332222 23 499999999998753 3577
Q ss_pred EEEecccc
Q psy17734 417 IMVSELLG 424 (626)
Q Consensus 417 iIVSEllg 424 (626)
||+++.-
T Consensus 100 -vv~NlPY 106 (255)
T 3tqs_A 100 -VVGNLPY 106 (255)
T ss_dssp -EEEECCH
T ss_pred -EEecCCc
Confidence 8888753
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.3e-06 Score=89.42 Aligned_cols=72 Identities=25% Similarity=0.285 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC--CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP--EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p--~k~DiIV 419 (626)
++ +|||||||+|.++..++.. + .+|+|||.++.++..++.... .+ |++++++|+.+++.+ ..+|.||
T Consensus 47 ~~-~VLEIG~G~G~lt~~L~~~----~--~~V~avEid~~~~~~l~~~~~---~~-~v~vi~~D~l~~~~~~~~~~~~iv 115 (271)
T 3fut_A 47 TG-PVFEVGPGLGALTRALLEA----G--AEVTAIEKDLRLRPVLEETLS---GL-PVRLVFQDALLYPWEEVPQGSLLV 115 (271)
T ss_dssp CS-CEEEECCTTSHHHHHHHHT----T--CCEEEEESCGGGHHHHHHHTT---TS-SEEEEESCGGGSCGGGSCTTEEEE
T ss_pred CC-eEEEEeCchHHHHHHHHHc----C--CEEEEEECCHHHHHHHHHhcC---CC-CEEEEECChhhCChhhccCccEEE
Confidence 46 8999999999999754443 2 399999999987744333221 23 499999999998775 3689999
Q ss_pred ecccc
Q psy17734 420 SELLG 424 (626)
Q Consensus 420 SEllg 424 (626)
+++.-
T Consensus 116 ~NlPy 120 (271)
T 3fut_A 116 ANLPY 120 (271)
T ss_dssp EEECS
T ss_pred ecCcc
Confidence 98864
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-06 Score=92.46 Aligned_cols=96 Identities=18% Similarity=0.198 Sum_probs=66.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
+..+|||||||+|.++..+++... ..+++++|. +.++ .++ .. . +|+++.+|+.+ ..| .+|+|++
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~------~~-~-~v~~~~~d~~~-~~~-~~D~v~~ 257 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFP----HLKCTVFDQ-PQVVGNLT------GN-E-NLNFVGGDMFK-SIP-SADAVLL 257 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCT----TSEEEEEEC-HHHHSSCC------CC-S-SEEEEECCTTT-CCC-CCSEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCC----CCeEEEecc-HHHHhhcc------cC-C-CcEEEeCccCC-CCC-CceEEEE
Confidence 347899999999999875544332 258999999 5444 221 12 2 49999999988 555 5999988
Q ss_pred ccccccCCCCCcHHHHHHHHHhccc---CcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKE---DGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~Lkp---gGi~IP~ 452 (626)
-..-+....+....+|..+.+.||| ||.++-.
T Consensus 258 ~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~ 292 (358)
T 1zg3_A 258 KWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIII 292 (358)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEE
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 5433222222234688889999999 9976643
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.5e-07 Score=93.00 Aligned_cols=76 Identities=17% Similarity=0.087 Sum_probs=57.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCH-------HHH-HHHHHHHHcCCCCCcEEEEEecccccC--C
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNM-------SAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--A 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np-------~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~ 411 (626)
++.+|||+|||+|.++..+ ++. + .+|+|+|.|+ .++ .++++...++..++ |+++++|+.++. .
T Consensus 83 ~~~~VLDlgcG~G~~a~~l---A~~-g--~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~r-i~~~~~d~~~~l~~~ 155 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVL---ASL-G--LTVTAFEQHPAVACLLSDGIRRALLNPETQDTAAR-INLHFGNAAEQMPAL 155 (258)
T ss_dssp GCCCEEETTCTTCHHHHHH---HHT-T--CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTT-EEEEESCHHHHHHHH
T ss_pred CcCeEEEeeCccCHHHHHH---HHh-C--CEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccC-eEEEECCHHHHHHhh
Confidence 3568999999999999643 332 3 4899999999 666 55555556666655 999999998852 3
Q ss_pred C---CCccEEEecccc
Q psy17734 412 P---EKADIMVSELLG 424 (626)
Q Consensus 412 p---~k~DiIVSEllg 424 (626)
+ ++||+|+++++.
T Consensus 156 ~~~~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 156 VKTQGKPDIVYLDPMY 171 (258)
T ss_dssp HHHHCCCSEEEECCCC
T ss_pred hccCCCccEEEECCCC
Confidence 3 689999998763
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.6e-07 Score=94.23 Aligned_cols=71 Identities=20% Similarity=0.333 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC--CCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP--EKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p--~k~DiI 418 (626)
++.+|||+|||+|.++..++.. + .+|+|||.++.++ .+.++.. . .+ +++++++|+.++..+ +++ .|
T Consensus 29 ~~~~VLDiG~G~G~~~~~l~~~----~--~~v~~id~~~~~~~~a~~~~~--~-~~-~v~~~~~D~~~~~~~~~~~f-~v 97 (245)
T 1yub_A 29 ETDTVYEIGTGKGHLTTKLAKI----S--KQVTSIELDSHLFNLSSEKLK--L-NT-RVTLIHQDILQFQFPNKQRY-KI 97 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHH----S--SEEEESSSSCSSSSSSSCTTT--T-CS-EEEECCSCCTTTTCCCSSEE-EE
T ss_pred CCCEEEEEeCCCCHHHHHHHHh----C--CeEEEEECCHHHHHHHHHHhc--c-CC-ceEEEECChhhcCcccCCCc-EE
Confidence 5678999999999998654433 2 3999999998766 4333322 1 23 599999999998765 467 78
Q ss_pred Eeccc
Q psy17734 419 VSELL 423 (626)
Q Consensus 419 VSEll 423 (626)
|+++.
T Consensus 98 v~n~P 102 (245)
T 1yub_A 98 VGNIP 102 (245)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 88764
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.10 E-value=5.9e-06 Score=84.95 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCC-------C
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPE-------K 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~-------k 414 (626)
++.+|||||||+|.++..++..+... ..+|+|||.++.++..++... .+ +++++++|+.+++.+. .
T Consensus 42 ~~~~VLEIG~G~G~lt~~La~~~~~~--~~~V~avDid~~~l~~a~~~~----~~-~v~~i~~D~~~~~~~~~~~~~~~~ 114 (279)
T 3uzu_A 42 RGERMVEIGPGLGALTGPVIARLATP--GSPLHAVELDRDLIGRLEQRF----GE-LLELHAGDALTFDFGSIARPGDEP 114 (279)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHHCBT--TBCEEEEECCHHHHHHHHHHH----GG-GEEEEESCGGGCCGGGGSCSSSSC
T ss_pred CcCEEEEEccccHHHHHHHHHhCCCc--CCeEEEEECCHHHHHHHHHhc----CC-CcEEEECChhcCChhHhcccccCC
Confidence 56799999999999998766554310 124999999998874443322 23 5999999999987653 2
Q ss_pred ccEEEeccc
Q psy17734 415 ADIMVSELL 423 (626)
Q Consensus 415 ~DiIVSEll 423 (626)
.+.||+++.
T Consensus 115 ~~~vv~NlP 123 (279)
T 3uzu_A 115 SLRIIGNLP 123 (279)
T ss_dssp CEEEEEECC
T ss_pred ceEEEEccC
Confidence 357888875
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.06 E-value=3e-06 Score=91.63 Aligned_cols=74 Identities=15% Similarity=0.118 Sum_probs=58.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc--CCCCCcEEEEEeccccc-CC--CCCcc
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE--QWAQSDVTIVSEDMRTW-NA--PEKAD 416 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n--~~~~~nV~vi~~D~~~~-~~--p~k~D 416 (626)
+.+|||+|||+|..+.. +++ .+ .+|+|||.|+.++ .++++...+ +. + +|+++++|+.++ .. ..+||
T Consensus 94 g~~VLDLgcG~G~~al~---LA~-~g--~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~-~i~~i~~Da~~~L~~~~~~~fD 165 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIA---LMS-KA--SQGIYIERNDETAVAARHNIPLLLNEG-K-DVNILTGDFKEYLPLIKTFHPD 165 (410)
T ss_dssp TCEEEESSCSSSHHHHH---HHT-TC--SEEEEEESCHHHHHHHHHHHHHHSCTT-C-EEEEEESCGGGSHHHHHHHCCS
T ss_pred CCEEEEeCCCchHHHHH---HHh-cC--CEEEEEECCHHHHHHHHHhHHHhccCC-C-cEEEEECcHHHhhhhccCCCce
Confidence 67999999999999853 333 23 4999999999877 777777777 77 4 599999999985 22 25899
Q ss_pred EEEecccc
Q psy17734 417 IMVSELLG 424 (626)
Q Consensus 417 iIVSEllg 424 (626)
+|++++.-
T Consensus 166 vV~lDPPr 173 (410)
T 3ll7_A 166 YIYVDPAR 173 (410)
T ss_dssp EEEECCEE
T ss_pred EEEECCCC
Confidence 99998863
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.3e-05 Score=92.44 Aligned_cols=81 Identities=12% Similarity=0.140 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhc--------------------------------------CCccEEEEEeCCHHHH
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEA--------------------------------------NRKVRVYAVEKNMSAV 383 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~--------------------------------------g~~~~V~AVE~np~a~ 383 (626)
++..|+|.+||+|.+...++..+... ..+.+|+|+|.++.++
T Consensus 190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av 269 (703)
T 3v97_A 190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI 269 (703)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence 45679999999999997766654210 0114899999999887
Q ss_pred -HHHHHHHHcCCCCCcEEEEEecccccCCCC---CccEEEeccc
Q psy17734 384 -VGLKYKKEEQWAQSDVTIVSEDMRTWNAPE---KADIMVSELL 423 (626)
Q Consensus 384 -~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~---k~DiIVSEll 423 (626)
.|++++..+|..+. |++.++|+.++..+. ++|+||+++.
T Consensus 270 ~~A~~N~~~agv~~~-i~~~~~D~~~~~~~~~~~~~d~Iv~NPP 312 (703)
T 3v97_A 270 QRARTNARLAGIGEL-ITFEVKDVAQLTNPLPKGPYGTVLSNPP 312 (703)
T ss_dssp HHHHHHHHHTTCGGG-EEEEECCGGGCCCSCTTCCCCEEEECCC
T ss_pred HHHHHHHHHcCCCCc-eEEEECChhhCccccccCCCCEEEeCCC
Confidence 88889989999877 999999999986552 8999999986
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=7.7e-06 Score=84.99 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=57.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CC----CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--AP----EK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p----~k 414 (626)
++.+|||+|||+|.++..++.... + .+|+|||.++.++ .++++...++ ++ |+++++|+.++. .+ .+
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~~~--~--~~VigvD~d~~al~~A~~~~~~~g--~~-v~~v~~d~~~l~~~l~~~g~~~ 98 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEHCP--G--CRIIGIDVDSEVLRIAEEKLKEFS--DR-VSLFKVSYREADFLLKTLGIEK 98 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCT--T--CEEEEEESCHHHHHHHHHHTGGGT--TT-EEEEECCGGGHHHHHHHTTCSC
T ss_pred CCCEEEEEeCCcCHHHHHHHHHCC--C--CEEEEEECCHHHHHHHHHHHHhcC--Cc-EEEEECCHHHHHHHHHhcCCCC
Confidence 567999999999999975544321 2 5999999999888 6666665555 44 999999998874 11 57
Q ss_pred ccEEEecc
Q psy17734 415 ADIMVSEL 422 (626)
Q Consensus 415 ~DiIVSEl 422 (626)
||.|++++
T Consensus 99 ~D~Vl~D~ 106 (301)
T 1m6y_A 99 VDGILMDL 106 (301)
T ss_dssp EEEEEEEC
T ss_pred CCEEEEcC
Confidence 99999876
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.95 E-value=4.7e-05 Score=74.51 Aligned_cols=97 Identities=18% Similarity=0.198 Sum_probs=70.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCC--CCCcEEEEEeccccc----------
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQW--AQSDVTIVSEDMRTW---------- 409 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~--~~~nV~vi~~D~~~~---------- 409 (626)
.++||++|||- |. +..++..+ .+|++||.++... .++++.++++. .++ |+++.+|..+.
T Consensus 31 a~~VLEiGtGy---ST--l~lA~~~~--g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~-I~~~~gda~~~~~wg~p~~~~ 102 (202)
T 3cvo_A 31 AEVILEYGSGG---ST--VVAAELPG--KHVTSVESDRAWARMMKAWLAANPPAEGTE-VNIVWTDIGPTGDWGHPVSDA 102 (202)
T ss_dssp CSEEEEESCSH---HH--HHHHTSTT--CEEEEEESCHHHHHHHHHHHHHSCCCTTCE-EEEEECCCSSBCGGGCBSSST
T ss_pred CCEEEEECchH---HH--HHHHHcCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCCc-eEEEEeCchhhhcccccccch
Confidence 46899999963 32 22233222 5999999998655 88888888898 776 99999996543
Q ss_pred -----C--------CC--CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 410 -----N--------AP--EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 410 -----~--------~p--~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+ .+ ++||+|+-+ ...-..|+..+.+.|+|||++|-+.+
T Consensus 103 ~~~~l~~~~~~i~~~~~~~~fDlIfID-------g~k~~~~~~~~l~~l~~GG~Iv~DNv 155 (202)
T 3cvo_A 103 KWRSYPDYPLAVWRTEGFRHPDVVLVD-------GRFRVGCALATAFSITRPVTLLFDDY 155 (202)
T ss_dssp TGGGTTHHHHGGGGCTTCCCCSEEEEC-------SSSHHHHHHHHHHHCSSCEEEEETTG
T ss_pred hhhhHHHHhhhhhccccCCCCCEEEEe-------CCCchhHHHHHHHhcCCCeEEEEeCC
Confidence 1 22 679999764 22225788877899999999987764
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.9e-05 Score=80.18 Aligned_cols=110 Identities=10% Similarity=0.098 Sum_probs=71.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhc---CC-----ccEEEEEeCCHH---H-H-----------HHHHHHHH-------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEA---NR-----KVRVYAVEKNMS---A-V-----------VGLKYKKE------- 391 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~---g~-----~~~V~AVE~np~---a-~-----------~a~~~~~~------- 391 (626)
+..+||++|+|+|.....++++..+. +. +.+++++|+.|. . . .+.+.++.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 45699999999999887666654111 11 369999999871 1 1 22333221
Q ss_pred ---cCCCC--CcEEEEEeccccc-C-CCC----CccEEEeccccccCCCCC-cHHHHHHHHHhcccCcEEEe
Q psy17734 392 ---EQWAQ--SDVTIVSEDMRTW-N-APE----KADIMVSELLGSFGDNEL-SPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 392 ---n~~~~--~nV~vi~~D~~~~-~-~p~----k~DiIVSEllgsfg~~El-~pe~L~~~~r~LkpgGi~IP 451 (626)
..+.+ .+++++.+|.++. + .+. +||+|+-+...--...|+ .+++++.+.+.|||||+++-
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 01221 2588999999884 2 222 799998864322223343 47899999999999999984
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.87 E-value=8.1e-06 Score=82.43 Aligned_cols=73 Identities=22% Similarity=0.267 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCC--ccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEK--ADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k--~DiIV 419 (626)
++.+|||+|||+|.++..++ +. +. .+|+|||.++.++..++.. . .. |++++++|+.+++.+.. ...||
T Consensus 31 ~~~~VLDiG~G~G~lt~~L~---~~-~~-~~v~avEid~~~~~~~~~~---~-~~-~v~~i~~D~~~~~~~~~~~~~~vv 100 (249)
T 3ftd_A 31 EGNTVVEVGGGTGNLTKVLL---QH-PL-KKLYVIELDREMVENLKSI---G-DE-RLEVINEDASKFPFCSLGKELKVV 100 (249)
T ss_dssp TTCEEEEEESCHHHHHHHHT---TS-CC-SEEEEECCCHHHHHHHTTS---C-CT-TEEEECSCTTTCCGGGSCSSEEEE
T ss_pred CcCEEEEEcCchHHHHHHHH---Hc-CC-CeEEEEECCHHHHHHHHhc---c-CC-CeEEEEcchhhCChhHccCCcEEE
Confidence 56799999999999986433 32 22 4999999999887444332 2 23 59999999999876531 23788
Q ss_pred ecccc
Q psy17734 420 SELLG 424 (626)
Q Consensus 420 SEllg 424 (626)
+++.-
T Consensus 101 ~NlPy 105 (249)
T 3ftd_A 101 GNLPY 105 (249)
T ss_dssp EECCT
T ss_pred EECch
Confidence 87753
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.86 E-value=5.1e-06 Score=84.09 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCC------Cc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPE------KA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~------k~ 415 (626)
++.+|||||||+|.++. + . + .+ +.+|+|||.++.++..++.... .. + |++++++|+.+++.++ ..
T Consensus 21 ~~~~VLEIG~G~G~lt~-l-~--~-~~-~~~v~avEid~~~~~~a~~~~~-~~-~-~v~~i~~D~~~~~~~~~~~~~~~~ 91 (252)
T 1qyr_A 21 KGQAMVEIGPGLAALTE-P-V--G-ER-LDQLTVIELDRDLAARLQTHPF-LG-P-KLTIYQQDAMTFNFGELAEKMGQP 91 (252)
T ss_dssp TTCCEEEECCTTTTTHH-H-H--H-TT-CSCEEEECCCHHHHHHHHTCTT-TG-G-GEEEECSCGGGCCHHHHHHHHTSC
T ss_pred CcCEEEEECCCCcHHHH-h-h--h-CC-CCeEEEEECCHHHHHHHHHHhc-cC-C-ceEEEECchhhCCHHHhhcccCCc
Confidence 45689999999999996 2 2 2 22 1239999999988744332211 11 2 5999999999986532 35
Q ss_pred cEEEeccc
Q psy17734 416 DIMVSELL 423 (626)
Q Consensus 416 DiIVSEll 423 (626)
|+||+++.
T Consensus 92 ~~vvsNlP 99 (252)
T 1qyr_A 92 LRVFGNLP 99 (252)
T ss_dssp EEEEEECC
T ss_pred eEEEECCC
Confidence 78999875
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.84 E-value=2.3e-05 Score=87.82 Aligned_cols=107 Identities=10% Similarity=-0.037 Sum_probs=72.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCC--------------ccEEEEEeCCHHHH-HHHHHHHHcCCCC----CcEEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANR--------------KVRVYAVEKNMSAV-VGLKYKKEEQWAQ----SDVTIV 402 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~--------------~~~V~AVE~np~a~-~a~~~~~~n~~~~----~nV~vi 402 (626)
++.+|+|.|||+|.+...+++.....+. ..+++|+|+++.++ +++.++..++... . +.++
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~-~~I~ 247 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHG-GAIR 247 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGT-BSEE
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcccccc-CCeE
Confidence 4578999999999998766554432110 13799999999877 7777766666652 2 7889
Q ss_pred EecccccC--CCCCccEEEeccccccC-CCC---------C--cHHHHHHHHHhcccCcEE
Q psy17734 403 SEDMRTWN--APEKADIMVSELLGSFG-DNE---------L--SPECLYAAQKYLKEDGIS 449 (626)
Q Consensus 403 ~~D~~~~~--~p~k~DiIVSEllgsfg-~~E---------l--~pe~L~~~~r~LkpgGi~ 449 (626)
++|..... ...+||+||+++.-... ..+ . -..++..+.+.|||||.+
T Consensus 248 ~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ 308 (541)
T 2ar0_A 248 LGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRA 308 (541)
T ss_dssp ESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred eCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEE
Confidence 99976542 23689999999852111 100 0 124677788899999863
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.83 E-value=8.5e-05 Score=83.16 Aligned_cols=112 Identities=17% Similarity=0.130 Sum_probs=76.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc--C--CCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW--N--APEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~--~--~p~k~D 416 (626)
++.+|+|.+||+|.+...+++...+.+ ..+++|+|+++.+. +++.++..++....++.++++|.... + ...+||
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~-~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD 299 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQ-TVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD 299 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred CCCEEeecccchhHHHHHHHHHHHhcc-CceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence 567999999999998755444322112 25999999999877 77777777777522499999998755 2 246899
Q ss_pred EEEeccccc--cCCC------------C-C---c---HHHHHHHHHhcc-cCcE---EEeccc
Q psy17734 417 IMVSELLGS--FGDN------------E-L---S---PECLYAAQKYLK-EDGI---SIPYNY 454 (626)
Q Consensus 417 iIVSEllgs--fg~~------------E-l---~---pe~L~~~~r~Lk-pgGi---~IP~~~ 454 (626)
+||+++.-. .... . . . -.++..+.+.|| |||+ ++|...
T Consensus 300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~ 362 (542)
T 3lkd_A 300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGV 362 (542)
T ss_dssp EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHH
T ss_pred EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchH
Confidence 999997522 1000 0 0 0 125677788999 9986 466543
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=97.79 E-value=2.1e-05 Score=73.88 Aligned_cols=84 Identities=18% Similarity=0.111 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC----CCCc
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA----PEKA 415 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~----p~k~ 415 (626)
.++.+|||+|||+. ++|.++.++ .+++.. ... ++++.+|++++.. +++|
T Consensus 11 ~~g~~vL~~~~g~v--------------------~vD~s~~ml~~a~~~~-----~~~-~~~~~~d~~~~~~~~~~~~~f 64 (176)
T 2ld4_A 11 SAGQFVAVVWDKSS--------------------PVEALKGLVDKLQALT-----GNE-GRVSVENIKQLLQSAHKESSF 64 (176)
T ss_dssp CTTSEEEEEECTTS--------------------CHHHHHHHHHHHHHHT-----TTT-SEEEEEEGGGGGGGCCCSSCE
T ss_pred CCCCEEEEecCCce--------------------eeeCCHHHHHHHHHhc-----ccC-cEEEEechhcCccccCCCCCE
Confidence 36789999999962 156666655 333322 223 9999999999865 4789
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|+|++...-.+.. +....++..+.|.|||||.++-
T Consensus 65 D~V~~~~~l~~~~-~~~~~~l~~~~r~LkpgG~l~~ 99 (176)
T 2ld4_A 65 DIILSGLVPGSTT-LHSAEILAEIARILRPGGCLFL 99 (176)
T ss_dssp EEEEECCSTTCCC-CCCHHHHHHHHHHEEEEEEEEE
T ss_pred eEEEECChhhhcc-cCHHHHHHHHHHHCCCCEEEEE
Confidence 9999954322221 2347899999999999999886
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.76 E-value=1.5e-05 Score=81.10 Aligned_cols=74 Identities=11% Similarity=0.040 Sum_probs=52.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHH---H----cC-CCCCcEEEEEecccccC--CC
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKK---E----EQ-WAQSDVTIVSEDMRTWN--AP 412 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~---~----n~-~~~~nV~vi~~D~~~~~--~p 412 (626)
.+|||+|||+|..+..++.. | .+|++||.++.+. .+++.++ . ++ ..+ +|+++++|+.++- .+
T Consensus 90 ~~VLDl~~G~G~dal~lA~~----g--~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~-~i~~~~~D~~~~L~~~~ 162 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV----G--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQE-RLQLIHASSLTALTDIT 162 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH----T--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHH-HEEEEESCHHHHSTTCS
T ss_pred CEEEEcCCcCCHHHHHHHHc----C--CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhc-CEEEEECCHHHHHHhCc
Confidence 68999999999999654432 3 3899999999654 3333332 1 22 223 4999999998852 34
Q ss_pred CCccEEEecccc
Q psy17734 413 EKADIMVSELLG 424 (626)
Q Consensus 413 ~k~DiIVSEllg 424 (626)
++||+|+.+++-
T Consensus 163 ~~fDvV~lDP~y 174 (258)
T 2oyr_A 163 PRPQVVYLDPMF 174 (258)
T ss_dssp SCCSEEEECCCC
T ss_pred ccCCEEEEcCCC
Confidence 579999999864
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=8e-05 Score=79.39 Aligned_cols=110 Identities=17% Similarity=0.182 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHH---HcCCC----CCcEEEEEecccccC---
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKK---EEQWA----QSDVTIVSEDMRTWN--- 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~---~n~~~----~~nV~vi~~D~~~~~--- 410 (626)
+.++||.+|.|.|...+.+++ . .. .+|+.||++|..+ ++++... ...+. ++ ++++.+|.+++-
T Consensus 205 ~pkrVLIIGgGdG~~~revlk---h-~~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~r-v~vii~Da~~fl~~~ 278 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVK---L-KP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDC-YQVLIEDCIPVLKRY 278 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHT---T-CC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETT-EEEEESCHHHHHHHH
T ss_pred CCCeEEEECCCcHHHHHHHHh---c-CC-ceeEEEccCHHHHHHHHhhchhhhhhhhccccccc-eeeehHHHHHHHHhh
Confidence 347899999999999865443 2 23 4999999999877 5555431 11222 34 999999998763
Q ss_pred --CCCCccEEEecccccc------CCCCC--cHHHHHHHHHhcccCcEEEeccceee
Q psy17734 411 --APEKADIMVSELLGSF------GDNEL--SPECLYAAQKYLKEDGISIPYNYTSY 457 (626)
Q Consensus 411 --~p~k~DiIVSEllgsf------g~~El--~pe~L~~~~r~LkpgGi~IP~~~t~y 457 (626)
..++||+||.++...- +..+. ..++++.+.+.|+|||+++-|....+
T Consensus 279 ~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~ 335 (381)
T 3c6k_A 279 AKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVN 335 (381)
T ss_dssp HHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETT
T ss_pred hhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCc
Confidence 2368999999875311 11111 24677888999999999997755433
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=1.2e-05 Score=81.84 Aligned_cols=103 Identities=15% Similarity=0.158 Sum_probs=61.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIVS 420 (626)
++.+|||+|||+|.++.. |+.+.+. ..|+|++..-............++ ++..+.++++...+ ++++|+|+|
T Consensus 74 ~~~~VLDLGaAPGGWSQv---Aa~~~~~-~~v~g~dVGvDl~~~pi~~~~~g~---~ii~~~~~~dv~~l~~~~~DlVls 146 (277)
T 3evf_A 74 LEGRVIDLGCGRGGWCYY---AAAQKEV-SGVKGFTLGRDGHEKPMNVQSLGW---NIITFKDKTDIHRLEPVKCDTLLC 146 (277)
T ss_dssp CCEEEEEETCTTCHHHHH---HHTSTTE-EEEEEECCCCTTCCCCCCCCBTTG---GGEEEECSCCTTTSCCCCCSEEEE
T ss_pred CCCEEEEecCCCCHHHHH---HHHhcCC-CcceeEEEeccCcccccccCcCCC---CeEEEeccceehhcCCCCccEEEe
Confidence 556899999999999963 3333333 378888876321100000001122 35556776644443 378999999
Q ss_pred ccccccCCCCC----cHHHHHHHHHhcccC-cEEEe
Q psy17734 421 ELLGSFGDNEL----SPECLYAAQKYLKED-GISIP 451 (626)
Q Consensus 421 Ellgsfg~~El----~pe~L~~~~r~Lkpg-Gi~IP 451 (626)
...-+-|..+. +-.+|+-+.++|||| |.++-
T Consensus 147 D~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~ 182 (277)
T 3evf_A 147 DIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV 182 (277)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 87554221111 112467778999999 99885
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00016 Score=80.99 Aligned_cols=108 Identities=13% Similarity=0.079 Sum_probs=72.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhhc----C-------CccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEA----N-------RKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-- 410 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~----g-------~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-- 410 (626)
+|+|.+||+|.+...+++..... + ...+++|+|+++.+. +++.++..++.... +.++++|.-...
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~-i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFN-FGKKNADSFLDDQH 325 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCB-CCSSSCCTTTSCSC
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcc-cceeccchhcCccc
Confidence 89999999998876654432210 0 025899999999877 77777777887655 666888865443
Q ss_pred CCCCccEEEeccccccCC--CC-------------------C---c---HHHHHHHHHhcccCcE---EEecc
Q psy17734 411 APEKADIMVSELLGSFGD--NE-------------------L---S---PECLYAAQKYLKEDGI---SIPYN 453 (626)
Q Consensus 411 ~p~k~DiIVSEllgsfg~--~E-------------------l---~---pe~L~~~~r~LkpgGi---~IP~~ 453 (626)
...+||+||+++.-.... .+ . . -.++..+.+.|||||. ++|+.
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g 398 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANG 398 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETH
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecch
Confidence 236899999998522100 00 1 0 1366777889999986 55554
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.36 E-value=2.1e-05 Score=80.22 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=60.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEec--ccccCCCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSED--MRTWNAPEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D--~~~~~~p~k~DiI 418 (626)
++.+|||||||+|.++.. |+++.++ ..|+|+|...... .++. ....++ ++..+..+ +.++. ++++|+|
T Consensus 90 ~~~~VLDLGaAPGGWsQv---Aa~~~gv-~sV~GvdvG~d~~~~pi~-~~~~g~---~ii~~~~~~dv~~l~-~~~~DvV 160 (282)
T 3gcz_A 90 PTGIVVDLGCGRGGWSYY---AASLKNV-KKVMAFTLGVQGHEKPIM-RTTLGW---NLIRFKDKTDVFNME-VIPGDTL 160 (282)
T ss_dssp CCEEEEEETCTTCHHHHH---HHTSTTE-EEEEEECCCCTTSCCCCC-CCBTTG---GGEEEECSCCGGGSC-CCCCSEE
T ss_pred CCCEEEEeCCCCCHHHHH---HHHhcCC-CeeeeEEeccCccccccc-cccCCC---ceEEeeCCcchhhcC-CCCcCEE
Confidence 566999999999999963 3433343 4899999874321 1110 011122 24445544 33333 3789999
Q ss_pred EeccccccCCCCC----cHHHHHHHHHhcccC--cEEEe
Q psy17734 419 VSELLGSFGDNEL----SPECLYAAQKYLKED--GISIP 451 (626)
Q Consensus 419 VSEllgsfg~~El----~pe~L~~~~r~Lkpg--Gi~IP 451 (626)
+|+..-+-|..+. +-.+|+-+.++|||| |.++-
T Consensus 161 LSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~ 199 (282)
T 3gcz_A 161 LCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCI 199 (282)
T ss_dssp EECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred EecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 9987655222111 123466677899999 98773
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00022 Score=82.39 Aligned_cols=79 Identities=18% Similarity=0.071 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcC--CccEEEEEeCCHHHH-HH--HHHHHHcCCCC--CcEEEEEecccccC--CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEAN--RKVRVYAVEKNMSAV-VG--LKYKKEEQWAQ--SDVTIVSEDMRTWN--AP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g--~~~~V~AVE~np~a~-~a--~~~~~~n~~~~--~nV~vi~~D~~~~~--~p 412 (626)
++.+|+|.|||+|.+...++ ++.+ .+.+++|+|+++.+. .| +.++..|.... .+..+...|..+.. ..
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA---~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~ 397 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVS---AGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDF 397 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHH---HTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGG
T ss_pred CCCEEEECCCCccHHHHHHH---HHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccccc
Confidence 46799999999999975433 3332 135899999999776 55 33332222211 12356666776633 23
Q ss_pred CCccEEEeccc
Q psy17734 413 EKADIMVSELL 423 (626)
Q Consensus 413 ~k~DiIVSEll 423 (626)
.+||+||+++.
T Consensus 398 ~kFDVVIgNPP 408 (878)
T 3s1s_A 398 ANVSVVVMNPP 408 (878)
T ss_dssp TTEEEEEECCB
T ss_pred CCCCEEEECCC
Confidence 68999999986
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=6e-05 Score=74.86 Aligned_cols=97 Identities=19% Similarity=0.169 Sum_probs=64.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEe-cccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSE-DMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~-D~~~~~~p~k~DiIVS 420 (626)
++.+|+|+||++|.++.. ++...|+ .+|+|+|+...-...=+.++..||. .|+++.+ |+..+.. .++|.|+|
T Consensus 78 ~g~~VvDLGaapGGWSq~---~a~~~g~-~~V~avdvG~~ghe~P~~~~s~gwn--~v~fk~gvDv~~~~~-~~~Dtllc 150 (267)
T 3p8z_A 78 PEGRVIDLGCGRGGWSYY---CAGLKKV-TEVRGYTKGGPGHEEPVPMSTYGWN--IVKLMSGKDVFYLPP-EKCDTLLC 150 (267)
T ss_dssp CCEEEEEESCTTSHHHHH---HHTSTTE-EEEEEECCCSTTSCCCCCCCCTTTT--SEEEECSCCGGGCCC-CCCSEEEE
T ss_pred CCCEEEEcCCCCCcHHHH---HHHhcCC-CEEEEEecCCCCccCcchhhhcCcC--ceEEEeccceeecCC-ccccEEEE
Confidence 567999999999999963 4555555 4899999975322100112345786 5999999 9876665 78999999
Q ss_pred ccccccCCCCC----cHHHHHHHHHhccc
Q psy17734 421 ELLGSFGDNEL----SPECLYAAQKYLKE 445 (626)
Q Consensus 421 Ellgsfg~~El----~pe~L~~~~r~Lkp 445 (626)
++-.+-+..+. .-.+|+-+.++|++
T Consensus 151 DIgeSs~~~~vE~~RtlrvLela~~wL~~ 179 (267)
T 3p8z_A 151 DIGESSPSPTVEESRTIRVLKMVEPWLKN 179 (267)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHGGGCSS
T ss_pred ecCCCCCChhhhhhHHHHHHHHHHHhccc
Confidence 76443322111 11255666788988
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=4.5e-05 Score=76.79 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=60.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhh--cCC-ccEEEEEe--CCHHHHHHHHHHHHcCCCCCcEEEEEe-cccccCCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKE--ANR-KVRVYAVE--KNMSAVVGLKYKKEEQWAQSDVTIVSE-DMRTWNAPEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~--~g~-~~~V~AVE--~np~a~~a~~~~~~n~~~~~nV~vi~~-D~~~~~~p~k~ 415 (626)
++.+|+|+||+.|.++.. |++. .+. +..|+|+| ..|.... ..+|. -++++++ |++++. +.++
T Consensus 73 pg~~VVDLGaAPGGWSQv---Aa~~~~vg~V~G~vig~D~~~~P~~~~------~~Gv~--~i~~~~G~Df~~~~-~~~~ 140 (269)
T 2px2_A 73 PIGKVVDLGCGRGGWSYY---AATMKNVQEVRGYTKGGPGHEEPMLMQ------SYGWN--IVTMKSGVDVFYKP-SEIS 140 (269)
T ss_dssp CCEEEEEETCTTSHHHHH---HTTSTTEEEEEEECCCSTTSCCCCCCC------STTGG--GEEEECSCCGGGSC-CCCC
T ss_pred CCCEEEEcCCCCCHHHHH---HhhhcCCCCceeEEEccccccCCCccc------CCCce--EEEeeccCCccCCC-CCCC
Confidence 678999999999999964 4443 221 24677777 3331110 02332 2566667 999865 4689
Q ss_pred cEEEeccccccCCCCCcH-----HHHHHHHHhcccCc-EEE
Q psy17734 416 DIMVSELLGSFGDNELSP-----ECLYAAQKYLKEDG-ISI 450 (626)
Q Consensus 416 DiIVSEllgsfg~~El~p-----e~L~~~~r~LkpgG-i~I 450 (626)
|+|+|+..-+-+ +...+ ..|+-+.++|+||| .++
T Consensus 141 DvVLSDMAPnSG-~~~vD~~Rs~~aL~~A~~~Lk~gG~~Fv 180 (269)
T 2px2_A 141 DTLLCDIGESSP-SAEIEEQRTLRILEMVSDWLSRGPKEFC 180 (269)
T ss_dssp SEEEECCCCCCS-CHHHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred CEEEeCCCCCCC-ccHHHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 999998765422 21111 24566678999999 655
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0016 Score=66.79 Aligned_cols=107 Identities=12% Similarity=0.051 Sum_probs=76.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcC-CccEEEEEeCCH---------------------------HHHHHHHHHHHcCC
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEAN-RKVRVYAVEKNM---------------------------SAVVGLKYKKEEQW 394 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g-~~~~V~AVE~np---------------------------~a~~a~~~~~~n~~ 394 (626)
...||++|+.+|.-+..++.+.+..+ ...+|+++|..+ ....++++.++.++
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 45899999999988776555554433 135899999642 12246677777888
Q ss_pred C-CCcEEEEEecccccC--C-CCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 395 A-QSDVTIVSEDMRTWN--A-PEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 395 ~-~~nV~vi~~D~~~~~--~-p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
. ++ |+++.||..+.- . ++++|+|.-+. ...+....+|+.+...|+|||++|-+.+
T Consensus 187 ~~~~-I~li~Gda~etL~~~~~~~~d~vfIDa----D~y~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 187 LDEQ-VRFLPGWFKDTLPTAPIDTLAVLRMDG----DLYESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp CSTT-EEEEESCHHHHSTTCCCCCEEEEEECC----CSHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CcCc-eEEEEeCHHHHHhhCCCCCEEEEEEcC----CccccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 4 66 999999998742 2 36899996632 1112224678888899999999999997
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.23 E-value=8.3e-05 Score=76.12 Aligned_cols=98 Identities=19% Similarity=0.215 Sum_probs=63.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEe-cccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSE-DMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~-D~~~~~~p~k~DiIVS 420 (626)
++.+|+|+||++|.++. .++...|+ .+|+|+|+..+-...=+.++.-+|. .|+++.+ |++.+.. +++|+|+|
T Consensus 94 ~~~~VlDLGaapGGwsq---~~~~~~gv-~~V~avdvG~~~he~P~~~~ql~w~--lV~~~~~~Dv~~l~~-~~~D~ivc 166 (321)
T 3lkz_A 94 PVGKVIDLGCGRGGWCY---YMATQKRV-QEVRGYTKGGPGHEEPQLVQSYGWN--IVTMKSGVDVFYRPS-ECCDTLLC 166 (321)
T ss_dssp CCEEEEEETCTTCHHHH---HHTTCTTE-EEEEEECCCSTTSCCCCCCCBTTGG--GEEEECSCCTTSSCC-CCCSEEEE
T ss_pred CCCEEEEeCCCCCcHHH---HHHhhcCC-CEEEEEEcCCCCccCcchhhhcCCc--ceEEEeccCHhhCCC-CCCCEEEE
Confidence 56699999999999995 35555565 3899999975311000001234664 4899988 9888876 78999999
Q ss_pred ccccccCCCCC----cHHHHHHHHHhcccC
Q psy17734 421 ELLGSFGDNEL----SPECLYAAQKYLKED 446 (626)
Q Consensus 421 Ellgsfg~~El----~pe~L~~~~r~Lkpg 446 (626)
++-.+-+..+. .-.+|+-+.++|+++
T Consensus 167 DigeSs~~~~ve~~Rtl~vLel~~~wL~~~ 196 (321)
T 3lkz_A 167 DIGESSSSAEVEEHRTIRVLEMVEDWLHRG 196 (321)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ECccCCCChhhhhhHHHHHHHHHHHHhccC
Confidence 76432222110 112566667899888
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00045 Score=73.35 Aligned_cols=85 Identities=20% Similarity=0.200 Sum_probs=60.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVS 420 (626)
++.+|+|+||++|.++..++ ++ | .+|+|||..++.-.. ... . +|+++++|..++.++ .++|+|||
T Consensus 211 ~G~~vlDLGAaPGGWT~~l~---~r-g--~~V~aVD~~~l~~~l----~~~---~-~V~~~~~d~~~~~~~~~~~D~vvs 276 (375)
T 4auk_A 211 NGMWAVDLGACPGGWTYQLV---KR-N--MWVYSVDNGPMAQSL----MDT---G-QVTWLREDGFKFRPTRSNISWMVC 276 (375)
T ss_dssp TTCEEEEETCTTCHHHHHHH---HT-T--CEEEEECSSCCCHHH----HTT---T-CEEEECSCTTTCCCCSSCEEEEEE
T ss_pred CCCEEEEeCcCCCHHHHHHH---HC-C--CEEEEEEhhhcChhh----ccC---C-CeEEEeCccccccCCCCCcCEEEE
Confidence 68999999999999997543 33 3 499999988644321 111 2 599999999998775 57999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccC
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKED 446 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~Lkpg 446 (626)
++. +....++.-..++|..+
T Consensus 277 Dm~------~~p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 277 DMV------EKPAKVAALMAQWLVNG 296 (375)
T ss_dssp CCS------SCHHHHHHHHHHHHHTT
T ss_pred cCC------CChHHhHHHHHHHHhcc
Confidence 763 22334555556677655
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0016 Score=69.20 Aligned_cols=121 Identities=14% Similarity=0.057 Sum_probs=81.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCC----CCcEEEEEecccccC--CCC
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWA----QSDVTIVSEDMRTWN--APE 413 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~----~~nV~vi~~D~~~~~--~p~ 413 (626)
.++.+|||+.||.|.=+..++.. +...+|+|+|.++.-. ...+++++.+.. ..+|++...|.+.+. .++
T Consensus 147 ~pg~~VLD~CAaPGGKT~~la~~----~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~ 222 (359)
T 4fzv_A 147 QPGDIVLDLCAAPGGKTLALLQT----GCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGD 222 (359)
T ss_dssp CTTEEEEESSCTTCHHHHHHHHT----TCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTT
T ss_pred CCCCEEEEecCCccHHHHHHHHh----cCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccc
Confidence 36789999999999887543322 2235899999998655 445555554432 125999999999874 347
Q ss_pred CccEEEecccccc---CC---C-CC----c-----------HHHHHHHHHhcccCcEEEeccceeeEEeccChHhH
Q psy17734 414 KADIMVSELLGSF---GD---N-EL----S-----------PECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLF 467 (626)
Q Consensus 414 k~DiIVSEllgsf---g~---~-El----~-----------pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l~ 467 (626)
+||.|+.+..-|. +. + +. . .++|..+.++|||||+++=+.+|+ .|.|-...-
T Consensus 223 ~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl--~~~ENE~vV 296 (359)
T 4fzv_A 223 TYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL--SHLQNEYVV 296 (359)
T ss_dssp CEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC--CTTTTHHHH
T ss_pred cCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC--chhhCHHHH
Confidence 8999998775332 11 1 11 1 136677788999999999766654 466665443
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00017 Score=74.08 Aligned_cols=103 Identities=10% Similarity=0.136 Sum_probs=59.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIVS 420 (626)
++.+|||+||++|.++..++ ++.++ ..|+|+|........-......++ ++..+..++.-..+ ++++|+|+|
T Consensus 81 ~g~~vlDLGaaPGgWsqva~---~~~gv-~sV~Gvdlg~~~~~~P~~~~~~~~---~iv~~~~~~di~~l~~~~~DlVls 153 (300)
T 3eld_A 81 ITGRVLDLGCGRGGWSYYAA---AQKEV-MSVKGYTLGIEGHEKPIHMQTLGW---NIVKFKDKSNVFTMPTEPSDTLLC 153 (300)
T ss_dssp CCEEEEEETCTTCHHHHHHH---TSTTE-EEEEEECCCCTTSCCCCCCCBTTG---GGEEEECSCCTTTSCCCCCSEEEE
T ss_pred CCCEEEEcCCCCCHHHHHHH---HhcCC-ceeeeEEeccccccccccccccCC---ceEEeecCceeeecCCCCcCEEee
Confidence 67899999999999996543 32333 489999986421100000000122 24444433332222 378999999
Q ss_pred ccccccCCCC----CcHHHHHHHHHhcccC-cEEEe
Q psy17734 421 ELLGSFGDNE----LSPECLYAAQKYLKED-GISIP 451 (626)
Q Consensus 421 Ellgsfg~~E----l~pe~L~~~~r~Lkpg-Gi~IP 451 (626)
+..-+-|..+ .+-.+|+-+.++|+|| |.++-
T Consensus 154 D~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~ 189 (300)
T 3eld_A 154 DIGESSSNPLVERDRTMKVLENFERWKHVNTENFCV 189 (300)
T ss_dssp CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEE
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 8765422111 1123566678899999 98874
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0015 Score=66.82 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC------CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA------PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~------p~k~ 415 (626)
++.+++|.+||.|..+..++.. + .+|+|+|.+|.|+...+.+. . ++ +++++++.+++.. .+++
T Consensus 22 ~gg~~VD~T~G~GGHS~~il~~----~--g~VigiD~Dp~Ai~~A~~L~-~---~r-v~lv~~~f~~l~~~L~~~g~~~v 90 (285)
T 1wg8_A 22 PGGVYVDATLGGAGHARGILER----G--GRVIGLDQDPEAVARAKGLH-L---PG-LTVVQGNFRHLKRHLAALGVERV 90 (285)
T ss_dssp TTCEEEETTCTTSHHHHHHHHT----T--CEEEEEESCHHHHHHHHHTC-C---TT-EEEEESCGGGHHHHHHHTTCSCE
T ss_pred CCCEEEEeCCCCcHHHHHHHHC----C--CEEEEEeCCHHHHHHHHhhc-c---CC-EEEEECCcchHHHHHHHcCCCCc
Confidence 5679999999999999765554 2 49999999999884433332 2 45 9999999998742 1579
Q ss_pred cEEEecc
Q psy17734 416 DIMVSEL 422 (626)
Q Consensus 416 DiIVSEl 422 (626)
|.|+.++
T Consensus 91 DgIL~DL 97 (285)
T 1wg8_A 91 DGILADL 97 (285)
T ss_dssp EEEEEEC
T ss_pred CEEEeCC
Confidence 9999875
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0048 Score=63.21 Aligned_cols=91 Identities=18% Similarity=0.120 Sum_probs=59.5
Q ss_pred CCCEEEEEcCC----CchHHHHHHHHHhhcCCc-cEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCcc
Q psy17734 342 VVTTIMVVGAG----RGPLVTASLNAAKEANRK-VRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~G----tG~Ls~~al~Aa~~~g~~-~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~D 416 (626)
.+.+|||+||| .-|=+. .++. .+.+ ..|+++|.++... +.++. +++|.+++....++|
T Consensus 109 ~gmrVLDLGA~s~kg~APGS~-VLr~---~~p~g~~VVavDL~~~~s------------da~~~-IqGD~~~~~~~~k~D 171 (344)
T 3r24_A 109 YNMRVIHFGAGSDKGVAPGTA-VLRQ---WLPTGTLLVDSDLNDFVS------------DADST-LIGDCATVHTANKWD 171 (344)
T ss_dssp TTCEEEEESCCCTTSBCHHHH-HHHH---HSCTTCEEEEEESSCCBC------------SSSEE-EESCGGGEEESSCEE
T ss_pred CCCEEEeCCCCCCCCCCCcHH-HHHH---hCCCCcEEEEeeCccccc------------CCCeE-EEccccccccCCCCC
Confidence 56899999983 333331 1221 2222 3999999997221 12344 999988877778999
Q ss_pred EEEeccc----cccCCCC------CcHHHHHHHHHhcccCcEEE
Q psy17734 417 IMVSELL----GSFGDNE------LSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 417 iIVSEll----gsfg~~E------l~pe~L~~~~r~LkpgGi~I 450 (626)
+|+|+.- |. .+.. +....++-+.+.|+|||.++
T Consensus 172 LVISDMAPNtTG~-~D~d~~Rs~~L~ElALdfA~~~LkpGGsFv 214 (344)
T 3r24_A 172 LIISDMYDPRTKH-VTKENDSKEGFFTYLCGFIKQKLALGGSIA 214 (344)
T ss_dssp EEEECCCCTTSCS-SCSCCCCCCTHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEecCCCCcCCc-cccchhHHHHHHHHHHHHHHHhCcCCCEEE
Confidence 9999863 33 1111 12446677788999999877
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0016 Score=66.71 Aligned_cols=96 Identities=17% Similarity=0.129 Sum_probs=64.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccc-c----CCCCCccEE
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT-W----NAPEKADIM 418 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~-~----~~p~k~DiI 418 (626)
..+||+-+|||.++..+++ . + .+++.||+++.+..+++...+. .++ +++++.|... + +.++++|+|
T Consensus 93 ~~~LDlfaGSGaLgiEaLS---~-~--d~~vfvE~~~~a~~~L~~Nl~~--~~~-~~V~~~D~~~~L~~l~~~~~~fdLV 163 (283)
T 2oo3_A 93 NSTLSYYPGSPYFAINQLR---S-Q--DRLYLCELHPTEYNFLLKLPHF--NKK-VYVNHTDGVSKLNALLPPPEKRGLI 163 (283)
T ss_dssp SSSCCEEECHHHHHHHHSC---T-T--SEEEEECCSHHHHHHHTTSCCT--TSC-EEEECSCHHHHHHHHCSCTTSCEEE
T ss_pred CCceeEeCCcHHHHHHHcC---C-C--CeEEEEeCCHHHHHHHHHHhCc--CCc-EEEEeCcHHHHHHHhcCCCCCccEE
Confidence 3589999999999965443 2 2 4999999999887544432111 344 9999999654 2 223589999
Q ss_pred EeccccccCCCCCcHHHHHHHHH--hcccCcEEE
Q psy17734 419 VSELLGSFGDNELSPECLYAAQK--YLKEDGISI 450 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r--~LkpgGi~I 450 (626)
+.++. |...+....+++.+.+ .+.|+|+++
T Consensus 164 fiDPP--Ye~k~~~~~vl~~L~~~~~r~~~Gi~v 195 (283)
T 2oo3_A 164 FIDPS--YERKEEYKEIPYAIKNAYSKFSTGLYC 195 (283)
T ss_dssp EECCC--CCSTTHHHHHHHHHHHHHHHCTTSEEE
T ss_pred EECCC--CCCCcHHHHHHHHHHHhCccCCCeEEE
Confidence 99884 3322234556666554 456888876
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0072 Score=55.94 Aligned_cols=86 Identities=21% Similarity=0.175 Sum_probs=53.0
Q ss_pred CCEEEEEcCCCch-HHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC--CCccEEE
Q psy17734 343 VTTIMVVGAGRGP-LVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP--EKADIMV 419 (626)
Q Consensus 343 ~~~VLDvG~GtG~-Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p--~k~DiIV 419 (626)
+.+||+||||+|. .+. ..+++.| ..|+|+|.||.|+. +++.|+.+-... +.+|+|-
T Consensus 36 ~~rVlEVG~G~g~~vA~---~La~~~g--~~V~atDInp~Av~----------------~v~dDiF~P~~~~Y~~~DLIY 94 (153)
T 2k4m_A 36 GTRVVEVGAGRFLYVSD---YIRKHSK--VDLVLTDIKPSHGG----------------IVRDDITSPRMEIYRGAALIY 94 (153)
T ss_dssp SSEEEEETCTTCCHHHH---HHHHHSC--CEEEEECSSCSSTT----------------EECCCSSSCCHHHHTTEEEEE
T ss_pred CCcEEEEccCCChHHHH---HHHHhCC--CeEEEEECCccccc----------------eEEccCCCCcccccCCcCEEE
Confidence 4689999999996 653 3333345 58999999985542 777888774432 5899996
Q ss_pred e-ccccccCCCCCcHHHHHHHHHhcccCcEEEeccce
Q psy17734 420 S-ELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 420 S-Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
+ .+ -.|+.+.+++-+.+ ..-+-++-|-...
T Consensus 95 sirP-----P~El~~~i~~lA~~-v~adliI~pL~~E 125 (153)
T 2k4m_A 95 SIRP-----PAEIHSSLMRVADA-VGARLIIKPLTGE 125 (153)
T ss_dssp EESC-----CTTTHHHHHHHHHH-HTCEEEEECBTTB
T ss_pred EcCC-----CHHHHHHHHHHHHH-cCCCEEEEcCCCC
Confidence 6 22 23555555554433 3333344443333
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0075 Score=61.94 Aligned_cols=44 Identities=18% Similarity=0.073 Sum_probs=33.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE 391 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~ 391 (626)
++.+|||+|||+|..+..+ ...| .+++|||.++.++ .+++++..
T Consensus 235 ~~~~vlD~f~GsGt~~~~a----~~~g--~~~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAA----ARWG--RRALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp TTCEEEETTCTTTHHHHHH----HHTT--CEEEEEESCHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH----HHcC--CeEEEEeCCHHHHHHHHHHHHH
Confidence 5679999999999998533 3345 3999999999887 66665544
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.032 Score=59.40 Aligned_cols=110 Identities=12% Similarity=0.033 Sum_probs=61.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHH--------HhhcC---CccEEEEEeCCHHHHHHH-HHHHH-----------cCCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNA--------AKEAN---RKVRVYAVEKNMSAVVGL-KYKKE-----------EQWAQSD 398 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~A--------a~~~g---~~~~V~AVE~np~a~~a~-~~~~~-----------n~~~~~n 398 (626)
+..+|+|+|||+|+.+..++.. .+..+ ...+|+..|.-.+-.-++ +.+.. .+....
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~- 130 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNR- 130 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCB-
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCC-
Confidence 3579999999999998765322 11111 357899988754332111 11110 011111
Q ss_pred EEEEEeccccc----CCCCCccEEEeccccccCCCC--------------C-------cH---------------HHHHH
Q psy17734 399 VTIVSEDMRTW----NAPEKADIMVSELLGSFGDNE--------------L-------SP---------------ECLYA 438 (626)
Q Consensus 399 V~vi~~D~~~~----~~p~k~DiIVSEllgsfg~~E--------------l-------~p---------------e~L~~ 438 (626)
-.++.+.-..+ -+++.+|+++|...-+++..- + +| .+|..
T Consensus 131 ~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ 210 (374)
T 3b5i_A 131 SYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA 210 (374)
T ss_dssp CSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23444444332 134789999997654454310 0 11 24667
Q ss_pred HHHhcccCcEEEec
Q psy17734 439 AQKYLKEDGISIPY 452 (626)
Q Consensus 439 ~~r~LkpgGi~IP~ 452 (626)
+.+.|+|||.++-.
T Consensus 211 ra~eL~pGG~mvl~ 224 (374)
T 3b5i_A 211 RAAEVKRGGAMFLV 224 (374)
T ss_dssp HHHHEEEEEEEEEE
T ss_pred HHHHhCCCCEEEEE
Confidence 78999999998744
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0048 Score=65.25 Aligned_cols=61 Identities=18% Similarity=0.113 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~ 410 (626)
++.+||+||.|.|.|+..++..++ + .+|+|||+++.....++... . .+ |++++++|.-+|.
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~---~-~~vvavE~D~~l~~~L~~~~--~-~~-~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYC---P-RQYSLLEKRSSLYKFLNAKF--E-GS-PLQILKRDPYDWS 118 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHC---C-SEEEEECCCHHHHHHHHHHT--T-TS-SCEEECSCTTCHH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCC---C-CEEEEEecCHHHHHHHHHhc--c-CC-CEEEEECCccchh
Confidence 357899999999999988776432 1 38999999998775555433 2 24 4999999997764
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.037 Score=59.13 Aligned_cols=108 Identities=13% Similarity=0.105 Sum_probs=64.5
Q ss_pred CCEEEEEcCCCchHHHHHHHH----Hhh------c---CCccEEEEEeCC--H-HHH-HHHHH-----HHHcCCCCCcEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNA----AKE------A---NRKVRVYAVEKN--M-SAV-VGLKY-----KKEEQWAQSDVT 400 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~A----a~~------~---g~~~~V~AVE~n--p-~a~-~a~~~-----~~~n~~~~~nV~ 400 (626)
..+|+|+|||+|+.++.++.. .++ . ....+|+..|.- . +.+ ..+.. .+..+-... ..
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~-~~ 131 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIG-SC 131 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTT-SE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCC-ce
Confidence 578999999999999866654 110 0 134789999974 2 332 11111 122221122 56
Q ss_pred EEEecccccC----CCCCccEEEeccccccCCCC--C-------------------c-HHH---------------HHHH
Q psy17734 401 IVSEDMRTWN----APEKADIMVSELLGSFGDNE--L-------------------S-PEC---------------LYAA 439 (626)
Q Consensus 401 vi~~D~~~~~----~p~k~DiIVSEllgsfg~~E--l-------------------~-pe~---------------L~~~ 439 (626)
++.+.-..+- +.+.+|+++|...-+++..- . + +++ |..+
T Consensus 132 f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 132 LIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777665542 24789999997644443211 1 1 223 6777
Q ss_pred HHhcccCcEEEe
Q psy17734 440 QKYLKEDGISIP 451 (626)
Q Consensus 440 ~r~LkpgGi~IP 451 (626)
.+-|+|||.++-
T Consensus 212 a~eL~pGG~mvl 223 (384)
T 2efj_A 212 SEELISRGRMLL 223 (384)
T ss_dssp HHHEEEEEEEEE
T ss_pred HHHhccCCeEEE
Confidence 899999999874
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.05 Score=60.55 Aligned_cols=80 Identities=8% Similarity=0.121 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCC---------ccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANR---------KVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~---------~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~ 411 (626)
.+.+|+|-.||+|.+...+.....+.+. +..++|+|+++.+. +++.++.-.+.+. -.+..+|.-..+.
T Consensus 217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~--~~I~~~dtL~~~~ 294 (530)
T 3ufb_A 217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY--PRIDPENSLRFPL 294 (530)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSC--CEEECSCTTCSCG
T ss_pred CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcc--ccccccccccCch
Confidence 4568999999999997655544332211 24799999999776 6766666666652 5667777654321
Q ss_pred -----CCCccEEEeccc
Q psy17734 412 -----PEKADIMVSELL 423 (626)
Q Consensus 412 -----p~k~DiIVSEll 423 (626)
..+||+||+++.
T Consensus 295 ~~~~~~~~fD~Il~NPP 311 (530)
T 3ufb_A 295 REMGDKDRVDVILTNPP 311 (530)
T ss_dssp GGCCGGGCBSEEEECCC
T ss_pred hhhcccccceEEEecCC
Confidence 258999999986
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.04 Score=57.68 Aligned_cols=73 Identities=16% Similarity=0.128 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC-------CCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN-------APEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~-------~p~k 414 (626)
++.+++|..+|.|.-+..++. ..+.+.+|+|+|.++.|+...+.+ ..++ |++++++..++. .+.+
T Consensus 57 pggiyVD~TlG~GGHS~~iL~---~lg~~GrVig~D~Dp~Al~~A~rL----~~~R-v~lv~~nF~~l~~~L~~~g~~~~ 128 (347)
T 3tka_A 57 PDGIYIDGTFGRGGHSRLILS---QLGEEGRLLAIDRDPQAIAVAKTI----DDPR-FSIIHGPFSALGEYVAERDLIGK 128 (347)
T ss_dssp TTCEEEESCCTTSHHHHHHHT---TCCTTCEEEEEESCHHHHHHHTTC----CCTT-EEEEESCGGGHHHHHHHTTCTTC
T ss_pred CCCEEEEeCcCCCHHHHHHHH---hCCCCCEEEEEECCHHHHHHHHhh----cCCc-EEEEeCCHHHHHHHHHhcCCCCc
Confidence 567999999999999965443 334446999999999887433322 2455 999999988863 1236
Q ss_pred ccEEEecc
Q psy17734 415 ADIMVSEL 422 (626)
Q Consensus 415 ~DiIVSEl 422 (626)
+|.|+.++
T Consensus 129 vDgILfDL 136 (347)
T 3tka_A 129 IDGILLDL 136 (347)
T ss_dssp EEEEEEEC
T ss_pred ccEEEECC
Confidence 99998865
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.052 Score=56.15 Aligned_cols=110 Identities=21% Similarity=0.256 Sum_probs=69.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcC--CccEEEEEeCCHH----------HHHHHHHHHH---cCCCCCcEEEEEeccc
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEAN--RKVRVYAVEKNMS----------AVVGLKYKKE---EQWAQSDVTIVSEDMR 407 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g--~~~~V~AVE~np~----------a~~a~~~~~~---n~~~~~nV~vi~~D~~ 407 (626)
..+|+|+|=|||.....++.++.+.+ .+.+.+++|+.+. .......... ..++....+++.+|++
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 46899999999998766665544333 3357789998531 1111111111 1112112567889987
Q ss_pred ccC--CC-CCccEEEeccccccCCCCCc-HHHHHHHHHhcccCcEEEec
Q psy17734 408 TWN--AP-EKADIMVSELLGSFGDNELS-PECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 408 ~~~--~p-~k~DiIVSEllgsfg~~El~-pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.- .+ .++|++.-+-+..--..|+. ++++..+.+.++|||++.-.
T Consensus 177 ~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTY 225 (308)
T 3vyw_A 177 KRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSY 225 (308)
T ss_dssp HHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEES
T ss_pred HHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEE
Confidence 742 23 47999987654433344553 88999999999999998743
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.036 Score=55.62 Aligned_cols=46 Identities=13% Similarity=0.032 Sum_probs=34.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQ 393 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~ 393 (626)
++.+|||..||+|..+.. +.+.| .+++++|.++.++ .+++++..++
T Consensus 212 ~~~~vlD~f~GsGtt~~~----a~~~g--r~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 212 PNDLVLDCFMGSGTTAIV----AKKLG--RNFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp TTCEEEESSCTTCHHHHH----HHHTT--CEEEEEESCHHHHHHHHHHHHC--
T ss_pred CCCEEEECCCCCCHHHHH----HHHcC--CeEEEEeCCHHHHHHHHHHHHhcc
Confidence 567999999999999853 33355 3999999999877 6666665443
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=94.48 E-value=0.19 Score=52.52 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHH-HHHHHHcC--
Q psy17734 317 IKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVG-LKYKKEEQ-- 393 (626)
Q Consensus 317 ~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a-~~~~~~n~-- 393 (626)
.|.......+.+.+.. .+...|+.+|||......++... .+ +.+++-||. |..+.. ++.+...+
T Consensus 80 ~Rt~~iD~~v~~fl~~--------~~~~qVV~LGaGlDTr~~RL~~~---~~-~~~~~EvD~-P~vi~~K~~~l~~~~~l 146 (334)
T 1rjd_A 80 LRTVGIDAAILEFLVA--------NEKVQVVNLGCGSDLRMLPLLQM---FP-HLAYVDIDY-NESVELKNSILRESEIL 146 (334)
T ss_dssp HHHHHHHHHHHHHHHH--------CSSEEEEEETCTTCCTHHHHHHH---CT-TEEEEEEEC-HHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHHHHHH--------CCCcEEEEeCCCCccHHHHhcCc---CC-CCEEEECCC-HHHHHHHHHHhhhccch
Confidence 4555556666665543 14568999999999998654332 11 268888888 544433 33333321
Q ss_pred ------------------CCCCcEEEEEecccccC----------CCCCccEEEeccccccCCCCCcHHHHHHHHHhccc
Q psy17734 394 ------------------WAQSDVTIVSEDMRTWN----------APEKADIMVSELLGSFGDNELSPECLYAAQKYLKE 445 (626)
Q Consensus 394 ------------------~~~~nV~vi~~D~~~~~----------~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~Lkp 445 (626)
-.++ .++|.+|+++.. .+....++|+|-+-.++..+....++..+...+ |
T Consensus 147 ~~~l~~~~~~~~~~~~~~~~~~-~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~ 224 (334)
T 1rjd_A 147 RISLGLSKEDTAKSPFLIDQGR-YKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-S 224 (334)
T ss_dssp HHHHTCCSSCCCCTTEEEECSS-EEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-S
T ss_pred hhhcccccccccccccccCCCc-eEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-C
Confidence 1244 999999999731 135678999998877777666667777776655 6
Q ss_pred CcEEE
Q psy17734 446 DGISI 450 (626)
Q Consensus 446 gGi~I 450 (626)
+|.++
T Consensus 225 ~~~~v 229 (334)
T 1rjd_A 225 HGLWI 229 (334)
T ss_dssp SEEEE
T ss_pred CcEEE
Confidence 77654
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=94.43 E-value=0.047 Score=57.77 Aligned_cols=110 Identities=9% Similarity=0.069 Sum_probs=64.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHH----Hhh--------cCCccEEEEEeCCHHHHHHH-HHHHHcCCCCCcEEEEEecccc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNA----AKE--------ANRKVRVYAVEKNMSAVVGL-KYKKEEQWAQSDVTIVSEDMRT 408 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~A----a~~--------~g~~~~V~AVE~np~a~~a~-~~~~~n~~~~~nV~vi~~D~~~ 408 (626)
+..+|+|+||++|+.++.++.. ..+ .....+|+..|.-.+-.-++ +.+....-..+ ..++.+.-..
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~-~~f~~gvpgS 129 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDG-VCFINGVPGS 129 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTT-CEEEEEEESC
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCC-CEEEEecchh
Confidence 3467999999999887543322 110 12357899999865544222 11111000012 4566666555
Q ss_pred c---C-CCCCccEEEeccccccCCC---CC------------c-H---------------HHHHHHHHhcccCcEEEec
Q psy17734 409 W---N-APEKADIMVSELLGSFGDN---EL------------S-P---------------ECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 409 ~---~-~p~k~DiIVSEllgsfg~~---El------------~-p---------------e~L~~~~r~LkpgGi~IP~ 452 (626)
+ - +.+.+|+++|..--+++.. ++ + + .+|..+.+-|+|||.++-.
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~ 208 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 3 1 2478999999764444332 10 0 1 2488889999999998743
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=94.24 E-value=0.088 Score=56.55 Aligned_cols=65 Identities=12% Similarity=0.175 Sum_probs=43.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--c-CCCCCcEEEEEecccc
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--E-QWAQSDVTIVSEDMRT 408 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--n-~~~~~nV~vi~~D~~~ 408 (626)
.++.+|+||||+.|..+..++. +..+...+|+|+|.+|.+. ..++++.. | +... ||++++.-+-+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~--~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~-~v~~~~~al~~ 293 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIG--VTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFAS-RITVHGCGAGE 293 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHH--HHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGG-GEEEECSEECS
T ss_pred CCCCEEEECCCCcCHHHHHHHH--HhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCC-CEEEEEeEEEC
Confidence 4678999999999999864331 2233225999999999877 55555555 3 3313 59998765543
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=93.41 E-value=0.085 Score=55.33 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=50.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC----CCccEEE
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP----EKADIMV 419 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p----~k~DiIV 419 (626)
.+|+|+.||.|.++..+..++-. . ..|+|+|.++.|..+.+. | +. +..++++|++++... .++|+|+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~--~-~~v~~~E~d~~a~~~~~~---N-~~--~~~~~~~Di~~~~~~~~~~~~~D~l~ 73 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIP--A-QVVAAIDVNTVANEVYKY---N-FP--HTQLLAKTIEGITLEEFDRLSFDMIL 73 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCS--E-EEEEEECCCHHHHHHHHH---H-CT--TSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred CeEEEeCcCccHHHHHHHHCCCC--c-eEEEEEeCCHHHHHHHHH---h-cc--ccccccCCHHHccHhHcCcCCcCEEE
Confidence 57999999999999765554410 1 379999999988855443 2 12 256788999988532 2699998
Q ss_pred eccc
Q psy17734 420 SELL 423 (626)
Q Consensus 420 SEll 423 (626)
..+.
T Consensus 74 ~gpP 77 (343)
T 1g55_A 74 MSPP 77 (343)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 8664
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.2 Score=57.32 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=71.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhc--------CCccEEEEEeCCHHHH-HHHHHH------------HHcCCC-----
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEA--------NRKVRVYAVEKNMSAV-VGLKYK------------KEEQWA----- 395 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~--------g~~~~V~AVE~np~a~-~a~~~~------------~~n~~~----- 395 (626)
+..+|+|+|-|+|...+.+.++.... ..+.+++++|+.|... ...+.. -...|.
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 34699999999999887777664321 1236899999976322 111111 012231
Q ss_pred -------C--CcEEEEEecccccC--C----CCCccEEEeccccccCCCCCc-HHHHHHHHHhcccCcEEEeccc
Q psy17734 396 -------Q--SDVTIVSEDMRTWN--A----PEKADIMVSELLGSFGDNELS-PECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 396 -------~--~nV~vi~~D~~~~~--~----p~k~DiIVSEllgsfg~~El~-pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+ ..++++.||+++.- + ..++|.++-+-+-.--..|+. ++++..+.++++|||++....+
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~ 212 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFTA 212 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESCC
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEeccC
Confidence 1 13778999987642 1 267999977553222234443 7889999999999998775543
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.2 Score=53.31 Aligned_cols=69 Identities=20% Similarity=0.129 Sum_probs=50.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC---------CCC
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA---------PEK 414 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~---------p~k 414 (626)
.+|+|+.||.|.++.-+.+|+ . ..|+|+|.++.|..+.+. | +. +..++++|++++.. ..+
T Consensus 3 ~~vidLFsG~GGlslG~~~aG----~-~~v~avE~d~~a~~t~~~---N-~~--~~~~~~~DI~~~~~~~~~~~~~~~~~ 71 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG----F-DVKMAVEIDQHAINTHAI---N-FP--RSLHVQEDVSLLNAEIIKGFFKNDMP 71 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT----C-EEEEEECSCHHHHHHHHH---H-CT--TSEEECCCGGGCCHHHHHHHHCSCCC
T ss_pred CeEEEEccCcCHHHHHHHHCC----C-cEEEEEeCCHHHHHHHHH---h-CC--CCceEecChhhcCHHHHHhhcccCCC
Confidence 579999999999997655544 3 368899999988755442 2 22 37889999998742 357
Q ss_pred ccEEEeccc
Q psy17734 415 ADIMVSELL 423 (626)
Q Consensus 415 ~DiIVSEll 423 (626)
+|+|+....
T Consensus 72 ~D~i~ggpP 80 (376)
T 3g7u_A 72 IDGIIGGPP 80 (376)
T ss_dssp CCEEEECCC
T ss_pred eeEEEecCC
Confidence 999987654
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.65 Score=48.73 Aligned_cols=93 Identities=13% Similarity=0.119 Sum_probs=60.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc---------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW---------NAP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~---------~~p 412 (626)
++.+||..|+ |.++.++++.++..|+ .+|++++.++......+. .|.. .++..+-.++ ..+
T Consensus 182 ~g~~VlV~Ga--G~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~---lGa~----~vi~~~~~~~~~~i~~~~~~~~ 251 (370)
T 4ej6_A 182 AGSTVAILGG--GVIGLLTVQLARLAGA-TTVILSTRQATKRRLAEE---VGAT----ATVDPSAGDVVEAIAGPVGLVP 251 (370)
T ss_dssp TTCEEEEECC--SHHHHHHHHHHHHTTC-SEEEEECSCHHHHHHHHH---HTCS----EEECTTSSCHHHHHHSTTSSST
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH---cCCC----EEECCCCcCHHHHHHhhhhccC
Confidence 5789999997 6788888888888885 399999999855422222 2321 1222111111 112
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.+|+++- .. ..++.+..+.+.|+++|.++--
T Consensus 252 gg~Dvvid-~~-------G~~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 252 GGVDVVIE-CA-------GVAETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp TCEEEEEE-CS-------CCHHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEE-CC-------CCHHHHHHHHHHhccCCEEEEE
Confidence 47999875 12 2356778888899999998754
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=92.51 E-value=0.51 Score=49.15 Aligned_cols=95 Identities=16% Similarity=0.056 Sum_probs=59.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEE-----ecc----cccCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVS-----EDM----RTWNAP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~-----~D~----~~~~~p 412 (626)
++.+||..|+ |.++.++++.++..|+ .+|++++.++.-....+.. . +..+.... .|. ++....
T Consensus 179 ~g~~VlV~Ga--G~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~~l-~----~~~~~~~~~~~~~~~~~~~v~~~t~g 250 (363)
T 3m6i_A 179 LGDPVLICGA--GPIGLITMLCAKAAGA-CPLVITDIDEGRLKFAKEI-C----PEVVTHKVERLSAEESAKKIVESFGG 250 (363)
T ss_dssp TTCCEEEECC--SHHHHHHHHHHHHTTC-CSEEEEESCHHHHHHHHHH-C----TTCEEEECCSCCHHHHHHHHHHHTSS
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHh-c----hhcccccccccchHHHHHHHHHHhCC
Confidence 5678999987 6788888899988886 2599999998654333222 1 22132221 111 111223
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..+|+++- .. ..+..+..+.+.|+++|.++--
T Consensus 251 ~g~Dvvid-~~-------g~~~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 251 IEPAVALE-CT-------GVESSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp CCCSEEEE-CS-------CCHHHHHHHHHHSCTTCEEEEC
T ss_pred CCCCEEEE-CC-------CChHHHHHHHHHhcCCCEEEEE
Confidence 57999975 11 1345677788899999998754
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=92.42 E-value=0.55 Score=48.62 Aligned_cols=89 Identities=18% Similarity=0.072 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
++.+||..|+ |.++.++++.++..|+ +|++++.++.-.... +..|- . ..+ .+...+. +.+|+++-
T Consensus 176 ~g~~VlV~Ga--G~vG~~a~qla~~~Ga--~Vi~~~~~~~~~~~~---~~lGa--~-~v~--~~~~~~~--~~~D~vid- 240 (348)
T 3two_A 176 KGTKVGVAGF--GGLGSMAVKYAVAMGA--EVSVFARNEHKKQDA---LSMGV--K-HFY--TDPKQCK--EELDFIIS- 240 (348)
T ss_dssp TTCEEEEESC--SHHHHHHHHHHHHTTC--EEEEECSSSTTHHHH---HHTTC--S-EEE--SSGGGCC--SCEEEEEE-
T ss_pred CCCEEEEECC--cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHH---HhcCC--C-eec--CCHHHHh--cCCCEEEE-
Confidence 5789999986 5788888888888885 899999887433222 22332 1 222 4444443 37999975
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
. .+..+ .+..+.+.|+++|.++--
T Consensus 241 ~---~g~~~----~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 241 T---IPTHY----DLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp C---CCSCC----CHHHHHTTEEEEEEEEEC
T ss_pred C---CCcHH----HHHHHHHHHhcCCEEEEE
Confidence 2 22222 356666789999987754
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=91.80 E-value=1 Score=46.82 Aligned_cols=93 Identities=16% Similarity=0.195 Sum_probs=58.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec---cccc----C--CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED---MRTW----N--AP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D---~~~~----~--~p 412 (626)
++.+||++|+ |.++.++++.++..|+ .+|++++.++......+ ..|-. .++..+ -.++ . ..
T Consensus 171 ~g~~VlV~Ga--G~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~---~lGa~----~vi~~~~~~~~~~~~~i~~~~~ 240 (356)
T 1pl8_A 171 LGHKVLVCGA--GPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAK---EIGAD----LVLQISKESPQEIARKVEGQLG 240 (356)
T ss_dssp TTCEEEEECC--SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHH---HTTCS----EEEECSSCCHHHHHHHHHHHHT
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHH---HhCCC----EEEcCcccccchHHHHHHHHhC
Confidence 5679999996 5677777888887775 38999999975432222 22321 223322 1111 0 01
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..+|+++- ..| .+..+....+.|+++|.++--
T Consensus 241 ~g~D~vid-~~g-------~~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 241 CKPEVTIE-CTG-------AEASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp SCCSEEEE-CSC-------CHHHHHHHHHHSCTTCEEEEC
T ss_pred CCCCEEEE-CCC-------ChHHHHHHHHHhcCCCEEEEE
Confidence 46999975 221 345677777899999988743
|
| >1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A* | Back alignment and structure |
|---|
Probab=91.67 E-value=8.5 Score=37.72 Aligned_cols=193 Identities=11% Similarity=0.049 Sum_probs=103.8
Q ss_pred EEeecCCCCCCHHHHHHHHHhCCccEEEecCCCccc-ccccccccccccCCCCcccccCCCCCcCccceEEEecCCcccc
Q psy17734 9 SVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRF-ARHKDVDRYRVFGLPEAQVQSLSSICPQWLKLIVCDIQCKLKD 87 (626)
Q Consensus 9 ~~g~~~~~~~~~~~~~~~~~~~~~df~~~pi~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~s~w~~~ 87 (626)
.+|..+..-.++.+.++.+.+.|||.|=+...+++. ...-.... . ...+..-+....-.- +.+....+-.+ +
T Consensus 3 ~~G~~~~~~~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~-~----~~~~~~~l~~~gl~~-~~~~~~~~~~~-~ 75 (285)
T 1qtw_A 3 YIGAHVSAAGGLANAAIRAAEIDATAFALFTKNQRQWRAAPLTTQ-T----IDEFKAACEKYHYTS-AQILPHDSYLI-N 75 (285)
T ss_dssp EEEEECCCTTCHHHHHHHHHHTTCSEEECCSSCSSCSSCCCCCHH-H----HHHHHHHHHHTTCCG-GGBCCBCCTTC-C
T ss_pred ceeEEeccccCHHHHHHHHHHcCCCEEEeeCCCCCcCcCCCCCHH-H----HHHHHHHHHHcCCCc-eeEEecCCccc-c
Confidence 477777666789999999999999999985545431 11000000 0 000000011100000 00111122246 8
Q ss_pred cCCccHHHHHHHHHHHHHHHhhhhhhCCCeEEEcC-CC--C-----ChhhHHHHHHHHhccCCceEEEEEeeccCCCccc
Q psy17734 88 FESKYVERRDHAKDLLHQELEYITYLGIPFIVVSL-DQ--P-----DFCNFARTLYAHSEKNMSYTAWIKVPIRPVDTSM 159 (626)
Q Consensus 88 ~ds~~~~~~~~s~~~l~~e~~~a~~~g~~~~i~~~-~~--~-----~~~~~ar~~~~~~~~~~~~~~~i~~p~~~~~~~~ 159 (626)
+.|+|+..|+.+.+.+++.++.|+-+|.+.|++.+ .. . ...++++.++..+.....+.+-++- +...
T Consensus 76 l~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~a~~~gv~l~lEn-~~~~---- 150 (285)
T 1qtw_A 76 LGHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVTAVIEN-TAGQ---- 150 (285)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEECCCBCTTTSCHHHHHHHHHHHHHHHHHHCSSCEEEEEC-CCCC----
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEec-CCCC----
Confidence 88999999999999999999999999999998843 11 1 1223455566554322344444431 1000
Q ss_pred cccCCCCCCccch-HHHHHHHHHhcCCCCceEEEEEec------CCCCCH----hHH---hHhhc-ccceEEEecc
Q psy17734 160 LRQQEEEPSSQDT-WRWWNMFRSVTNYHSKFELALEIN------GDICDD----HEL---TRWLG-EPLRCVFIPT 220 (626)
Q Consensus 160 ~~~~~~~~~~~~~-w~~W~~~r~~c~~~~~l~v~L~l~------~~~p~~----~~~---~rW~~-EPv~~~~i~~ 220 (626)
......+ .+....++ .++-++++++.+++. .++... ..+ .+.+| +-|+.+-+.-
T Consensus 151 ------~~~~~~~~~~~~~l~~-~v~~~~~~g~~~D~~H~~~~g~~~~~~~~~~~~~~~~~~~~g~~~i~~vH~~D 219 (285)
T 1qtw_A 151 ------GSNLGFKFEHLAAIID-GVEDKSRVGVCIDTCHAFAAGYDLRTPAECEKTFADFARTVGFKYLRGMHLND 219 (285)
T ss_dssp ------TTBCCSSHHHHHHHHH-HCSCGGGEEEEEEHHHHHHHTCCCSSHHHHHHHHHHHHHHTCGGGEEEEEECE
T ss_pred ------CCcccCCHHHHHHHHH-hhcCccceEEEEEhHhHHHcCCCcCChHHHHHHHHHHHHhcCccceeEEEEec
Confidence 0000123 33333333 343457899999985 233321 123 34445 7788887764
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=91.61 E-value=0.91 Score=47.99 Aligned_cols=99 Identities=14% Similarity=0.074 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc--------CCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW--------NAPE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~--------~~p~ 413 (626)
++.+||++|| |.++.++++.++..|+ .+|++++.++......+ .++ .+++..+-.++ ....
T Consensus 185 ~g~~VlV~Ga--G~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~-----~lG---a~~i~~~~~~~~~~~~~~~~~g~ 253 (398)
T 2dph_A 185 PGSHVYIAGA--GPVGRCAAAGARLLGA-ACVIVGDQNPERLKLLS-----DAG---FETIDLRNSAPLRDQIDQILGKP 253 (398)
T ss_dssp TTCEEEEECC--SHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHH-----TTT---CEEEETTSSSCHHHHHHHHHSSS
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHH-----HcC---CcEEcCCCcchHHHHHHHHhCCC
Confidence 5789999997 5677777777777774 38999999975442221 222 23443222222 1113
Q ss_pred CccEEEeccccccCC-------CCCcHHHHHHHHHhcccCcEEEec
Q psy17734 414 KADIMVSELLGSFGD-------NELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 414 k~DiIVSEllgsfg~-------~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+|+++- ..|.-.. .+..+..+..+.+.|+++|.++--
T Consensus 254 g~Dvvid-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 254 EVDCGVD-AVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp CEEEEEE-CSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred CCCEEEE-CCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 6999875 2221100 001234677778899999988743
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.18 E-value=1.2 Score=46.54 Aligned_cols=93 Identities=19% Similarity=0.105 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC------CCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN------APEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~------~p~k~ 415 (626)
++.+||++|| |.++.++++.++..|+ .+|++++.++......+. .|- -.++..+-.++. ....+
T Consensus 190 ~g~~VlV~Ga--G~vG~~a~qlak~~Ga-~~Vi~~~~~~~~~~~a~~---lGa----~~vi~~~~~~~~~~~~~~~~gg~ 259 (371)
T 1f8f_A 190 PASSFVTWGA--GAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQ---LGA----THVINSKTQDPVAAIKEITDGGV 259 (371)
T ss_dssp TTCEEEEESC--SHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHH---HTC----SEEEETTTSCHHHHHHHHTTSCE
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH---cCC----CEEecCCccCHHHHHHHhcCCCC
Confidence 5679999986 5677777788777775 279999999755422222 232 122332211110 11369
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
|+++- ..| .++.+..+.+.|+++|.++--
T Consensus 260 D~vid-~~g-------~~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 260 NFALE-STG-------SPEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp EEEEE-CSC-------CHHHHHHHHHTEEEEEEEEEC
T ss_pred cEEEE-CCC-------CHHHHHHHHHHHhcCCEEEEe
Confidence 99874 222 245777788899999988743
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=91.08 E-value=0.35 Score=50.29 Aligned_cols=68 Identities=18% Similarity=0.107 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC--CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP--EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p--~k~DiIV 419 (626)
...+|+|+.||.|.++..+.. +|. ..|+|+|.++.|..+.+... .+. . ++|++++... ..+|+|+
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~----aG~-~~v~~~e~d~~a~~t~~~N~----~~~-~---~~Di~~~~~~~~~~~D~l~ 76 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALES----CGA-ECVYSNEWDKYAQEVYEMNF----GEK-P---EGDITQVNEKTIPDHDILC 76 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHH----TTC-EEEEEECCCHHHHHHHHHHH----SCC-C---BSCGGGSCGGGSCCCSEEE
T ss_pred CCCcEEEECCCcCHHHHHHHH----CCC-eEEEEEeCCHHHHHHHHHHc----CCC-C---cCCHHHcCHhhCCCCCEEE
Confidence 357899999999999865443 344 37999999998885554321 222 2 6888887532 3699998
Q ss_pred ecc
Q psy17734 420 SEL 422 (626)
Q Consensus 420 SEl 422 (626)
..+
T Consensus 77 ~gp 79 (327)
T 2c7p_A 77 AGF 79 (327)
T ss_dssp EEC
T ss_pred ECC
Confidence 864
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=90.84 E-value=0.63 Score=52.86 Aligned_cols=112 Identities=12% Similarity=0.159 Sum_probs=72.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhh--------cCCccEEEEEeCCH---HHHH-HHH----------HHHHcCCCC---
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKE--------ANRKVRVYAVEKNM---SAVV-GLK----------YKKEEQWAQ--- 396 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~--------~g~~~~V~AVE~np---~a~~-a~~----------~~~~n~~~~--- 396 (626)
+..+|+|+|-|+|...+.++++..+ .+.+.+++++|+.| .... +++ .+. ..|..
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~-~~~~~~~~ 144 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQ-AQWPMPLP 144 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHH-HHCCCCCS
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHH-HhCcccCC
Confidence 3468999999999988877777542 12346899999944 3221 222 111 12321
Q ss_pred -----------CcEEEEEecccccC--C----CCCccEEEeccccccCCCCCc-HHHHHHHHHhcccCcEEEeccc
Q psy17734 397 -----------SDVTIVSEDMRTWN--A----PEKADIMVSELLGSFGDNELS-PECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 397 -----------~nV~vi~~D~~~~~--~----p~k~DiIVSEllgsfg~~El~-pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
..+++..+|+++.- . ..++|++.-+-+..-...|+. ++++..+.+.++|||++....+
T Consensus 145 ~~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~ 220 (676)
T 3ps9_A 145 GCHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTS 220 (676)
T ss_dssp EEEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCC
T ss_pred CceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEeccC
Confidence 13667888887631 1 257999987654433344553 7899999999999999875543
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=90.77 E-value=0.84 Score=47.00 Aligned_cols=92 Identities=16% Similarity=0.095 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC-----CCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN-----APEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~-----~p~k~D 416 (626)
++.+||..||| .++.++++.++..|+ +|++++.++......+ ..|- . . ++..+-.++. ....+|
T Consensus 166 ~g~~VlV~GaG--~vG~~a~qla~~~Ga--~Vi~~~~~~~~~~~~~---~lGa--~-~-~i~~~~~~~~~~~~~~~g~~d 234 (340)
T 3s2e_A 166 PGQWVVISGIG--GLGHVAVQYARAMGL--RVAAVDIDDAKLNLAR---RLGA--E-V-AVNARDTDPAAWLQKEIGGAH 234 (340)
T ss_dssp TTSEEEEECCS--TTHHHHHHHHHHTTC--EEEEEESCHHHHHHHH---HTTC--S-E-EEETTTSCHHHHHHHHHSSEE
T ss_pred CCCEEEEECCC--HHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHH---HcCC--C-E-EEeCCCcCHHHHHHHhCCCCC
Confidence 67889999874 577777888887784 9999999985442222 2232 1 2 2322211211 113688
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+++-.. ..++.++.+.+.|+++|.++--
T Consensus 235 ~vid~~--------g~~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 235 GVLVTA--------VSPKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp EEEESS--------CCHHHHHHHHHHEEEEEEEEEC
T ss_pred EEEEeC--------CCHHHHHHHHHHhccCCEEEEe
Confidence 887521 2466788888999999988754
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=90.72 E-value=0.65 Score=48.02 Aligned_cols=92 Identities=16% Similarity=0.161 Sum_probs=58.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhc--CCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec-----ccccCCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEA--NRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED-----MRTWNAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~--g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D-----~~~~~~p~k 414 (626)
++.+||++|+ |.++.++++.++.. |+ +|++++.++......+. .|- + .++..+ .+++.....
T Consensus 170 ~g~~VlV~Ga--G~vG~~aiqlak~~~~Ga--~Vi~~~~~~~~~~~~~~---lGa-~---~vi~~~~~~~~~~~~~~g~g 238 (344)
T 2h6e_A 170 AEPVVIVNGI--GGLAVYTIQILKALMKNI--TIVGISRSKKHRDFALE---LGA-D---YVSEMKDAESLINKLTDGLG 238 (344)
T ss_dssp SSCEEEEECC--SHHHHHHHHHHHHHCTTC--EEEEECSCHHHHHHHHH---HTC-S---EEECHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHhcCCC--EEEEEeCCHHHHHHHHH---hCC-C---EEeccccchHHHHHhhcCCC
Confidence 4679999998 57888888888877 74 89999998754422222 232 1 222211 112222237
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+|+++-- .| .++.+..+.+.|+++|.++--
T Consensus 239 ~D~vid~-~g-------~~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 239 ASIAIDL-VG-------TEETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp EEEEEES-SC-------CHHHHHHHHHHEEEEEEEEEC
T ss_pred ccEEEEC-CC-------ChHHHHHHHHHhhcCCEEEEe
Confidence 9999752 22 244677778899999987743
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=90.32 E-value=0.59 Score=48.52 Aligned_cols=92 Identities=18% Similarity=0.108 Sum_probs=58.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-------CCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-------NAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-------~~p~k 414 (626)
++.+||.+|+ |.++.++++.++..|+ .+|++++.++......+. .|- -.++..+-.++ .....
T Consensus 166 ~g~~VlV~Ga--G~vG~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~~---lGa----~~vi~~~~~~~~~~v~~~t~g~g 235 (352)
T 3fpc_A 166 LGDTVCVIGI--GPVGLMSVAGANHLGA-GRIFAVGSRKHCCDIALE---YGA----TDIINYKNGDIVEQILKATDGKG 235 (352)
T ss_dssp TTCCEEEECC--SHHHHHHHHHHHTTTC-SSEEEECCCHHHHHHHHH---HTC----CEEECGGGSCHHHHHHHHTTTCC
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH---hCC----ceEEcCCCcCHHHHHHHHcCCCC
Confidence 5678999986 6788888888887775 389999999864422222 232 12332221221 12246
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+|+++- ..| .++.+..+.+.|+++|.++-
T Consensus 236 ~D~v~d-~~g-------~~~~~~~~~~~l~~~G~~v~ 264 (352)
T 3fpc_A 236 VDKVVI-AGG-------DVHTFAQAVKMIKPGSDIGN 264 (352)
T ss_dssp EEEEEE-CSS-------CTTHHHHHHHHEEEEEEEEE
T ss_pred CCEEEE-CCC-------ChHHHHHHHHHHhcCCEEEE
Confidence 999974 222 13467777788999998773
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=90.14 E-value=0.25 Score=51.31 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec------ccccCCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED------MRTWNAPEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D------~~~~~~p~k~ 415 (626)
++.+||..| |.|.++.++++.++..|+ +|++++.++......+. .|- + .++..+ +++. ....+
T Consensus 150 ~g~~VlV~g-g~G~vG~~a~qla~~~Ga--~Vi~~~~~~~~~~~~~~---lGa-~---~vi~~~~~~~~~~~~~-~~~g~ 218 (346)
T 3fbg_A 150 EGKTLLIIN-GAGGVGSIATQIAKAYGL--RVITTASRNETIEWTKK---MGA-D---IVLNHKESLLNQFKTQ-GIELV 218 (346)
T ss_dssp TTCEEEEES-TTSHHHHHHHHHHHHTTC--EEEEECCSHHHHHHHHH---HTC-S---EEECTTSCHHHHHHHH-TCCCE
T ss_pred CCCEEEEEc-CCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHh---cCC-c---EEEECCccHHHHHHHh-CCCCc
Confidence 467899986 356788888888888885 99999998754422222 232 1 122211 1111 22479
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|+++- .. ..+..++.+.+.|+++|.++
T Consensus 219 Dvv~d-~~-------g~~~~~~~~~~~l~~~G~iv 245 (346)
T 3fbg_A 219 DYVFC-TF-------NTDMYYDDMIQLVKPRGHIA 245 (346)
T ss_dssp EEEEE-SS-------CHHHHHHHHHHHEEEEEEEE
T ss_pred cEEEE-CC-------CchHHHHHHHHHhccCCEEE
Confidence 98875 11 23556777888999999986
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.12 E-value=1.6 Score=45.06 Aligned_cols=92 Identities=20% Similarity=0.218 Sum_probs=57.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecc-ccc----C--C---
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDM-RTW----N--A--- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~-~~~----~--~--- 411 (626)
++.+||..|+ |.++.++++.++..|+ +|++++.++......+ ..+.. . ++..+- .++ . .
T Consensus 168 ~g~~VlV~Ga--G~vG~~a~qla~~~Ga--~Vi~~~~~~~~~~~~~---~lGa~---~-~~~~~~~~~~~~~i~~~~~~~ 236 (352)
T 1e3j_A 168 LGTTVLVIGA--GPIGLVSVLAAKAYGA--FVVCTARSPRRLEVAK---NCGAD---V-TLVVDPAKEEESSIIERIRSA 236 (352)
T ss_dssp TTCEEEEECC--SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHH---HTTCS---E-EEECCTTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHH---HhCCC---E-EEcCcccccHHHHHHHHhccc
Confidence 5689999996 5788888888887785 6999999975542222 22321 2 222211 111 0 1
Q ss_pred -CCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 412 -PEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 412 -p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
...+|+++-- .| .+..+..+.+.|+++|.++--
T Consensus 237 ~g~g~D~vid~-~g-------~~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 237 IGDLPNVTIDC-SG-------NEKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp SSSCCSEEEEC-SC-------CHHHHHHHHHHSCTTCEEEEC
T ss_pred cCCCCCEEEEC-CC-------CHHHHHHHHHHHhcCCEEEEE
Confidence 2469998752 21 245677777899999988743
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=90.00 E-value=0.67 Score=48.39 Aligned_cols=87 Identities=13% Similarity=0.173 Sum_probs=55.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCH---HHHHHHHHHHHcCCCCCcEEEEEecccc-cCC-----CC
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNM---SAVVGLKYKKEEQWAQSDVTIVSEDMRT-WNA-----PE 413 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np---~a~~a~~~~~~n~~~~~nV~vi~~D~~~-~~~-----p~ 413 (626)
+.+||..|+ |.++.++++.++..|+ +|++++.++ ......+. .+ .+.+ | ++ +.. ..
T Consensus 181 g~~VlV~Ga--G~vG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~~~~~~~---~g-----a~~v--~-~~~~~~~~~~~~~ 245 (366)
T 2cdc_A 181 CRKVLVVGT--GPIGVLFTLLFRTYGL--EVWMANRREPTEVEQTVIEE---TK-----TNYY--N-SSNGYDKLKDSVG 245 (366)
T ss_dssp TCEEEEESC--HHHHHHHHHHHHHHTC--EEEEEESSCCCHHHHHHHHH---HT-----CEEE--E-CTTCSHHHHHHHC
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCC--EEEEEeCCccchHHHHHHHH---hC-----Ccee--c-hHHHHHHHHHhCC
Confidence 789999998 7788888888887784 999999986 43321221 22 2222 2 22 110 14
Q ss_pred CccEEEeccccccCCCCCcHHHH-HHHHHhcccCcEEEec
Q psy17734 414 KADIMVSELLGSFGDNELSPECL-YAAQKYLKEDGISIPY 452 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L-~~~~r~LkpgGi~IP~ 452 (626)
.+|+++.-. | .+..+ ..+.+.|+++|.++--
T Consensus 246 ~~d~vid~~-g-------~~~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 246 KFDVIIDAT-G-------ADVNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp CEEEEEECC-C-------CCTHHHHHHGGGEEEEEEEEEC
T ss_pred CCCEEEECC-C-------ChHHHHHHHHHHHhcCCEEEEE
Confidence 689998622 2 12245 6777889999987743
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=89.88 E-value=1.7 Score=42.92 Aligned_cols=64 Identities=9% Similarity=0.049 Sum_probs=49.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++||..|| |.++..++++....| .+|+++..++.....+.. . +++++.+|+.++. -..+|+||.
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~-------~-~~~~~~~D~~d~~-~~~~d~vi~ 69 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQG--WRIIGTSRNPDQMEAIRA-------S-GAEPLLWPGEEPS-LDGVTHLLI 69 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGT--CEEEEEESCGGGHHHHHH-------T-TEEEEESSSSCCC-CTTCCEEEE
T ss_pred CcEEEECC--cHHHHHHHHHHHHCC--CEEEEEEcChhhhhhHhh-------C-CCeEEEecccccc-cCCCCEEEE
Confidence 57999994 999988888776666 599999998743322211 2 4999999999987 578999987
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.74 E-value=1.8 Score=45.53 Aligned_cols=98 Identities=19% Similarity=0.153 Sum_probs=59.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccc-c-------CCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT-W-------NAPE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~-~-------~~p~ 413 (626)
++.+||++|| |.++.++++.++..|+ .+|+++|.++......+. .| .+++..+-.+ + ....
T Consensus 185 ~g~~VlV~Ga--G~vG~~aiqlAk~~Ga-~~Vi~~~~~~~~~~~a~~---lG-----a~~i~~~~~~~~~~~v~~~t~g~ 253 (398)
T 1kol_A 185 PGSTVYVAGA--GPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKA---QG-----FEIADLSLDTPLHEQIAALLGEP 253 (398)
T ss_dssp TTCEEEEECC--SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHH---TT-----CEEEETTSSSCHHHHHHHHHSSS
T ss_pred CCCEEEEECC--cHHHHHHHHHHHHCCC-CeEEEEcCCHHHHHHHHH---cC-----CcEEccCCcchHHHHHHHHhCCC
Confidence 5679999996 6788888888887785 389999999854422222 22 2333321111 1 1124
Q ss_pred CccEEEeccccccC--------CCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 414 KADIMVSELLGSFG--------DNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 414 k~DiIVSEllgsfg--------~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
.+|+++- ..|.-. ..+..++.+..+.+.|+++|.++-
T Consensus 254 g~Dvvid-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~ 298 (398)
T 1kol_A 254 EVDCAVD-AVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGI 298 (398)
T ss_dssp CEEEEEE-CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEE
T ss_pred CCCEEEE-CCCCcccccccccccccchHHHHHHHHHHHhcCCEEEE
Confidence 6999875 233110 001123577778889999998764
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=89.74 E-value=0.99 Score=40.30 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=44.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC-----CCCccEE
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA-----PEKADIM 418 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~-----p~k~DiI 418 (626)
.+|+.+|+|+ ++..+++.....| ..|+++|.++.....++. . ++.++.+|..+-.. -+++|++
T Consensus 8 ~~viIiG~G~--~G~~la~~L~~~g--~~v~vid~~~~~~~~~~~---~-----g~~~i~gd~~~~~~l~~a~i~~ad~v 75 (140)
T 3fwz_A 8 NHALLVGYGR--VGSLLGEKLLASD--IPLVVIETSRTRVDELRE---R-----GVRAVLGNAANEEIMQLAHLECAKWL 75 (140)
T ss_dssp SCEEEECCSH--HHHHHHHHHHHTT--CCEEEEESCHHHHHHHHH---T-----TCEEEESCTTSHHHHHHTTGGGCSEE
T ss_pred CCEEEECcCH--HHHHHHHHHHHCC--CCEEEEECCHHHHHHHHH---c-----CCCEEECCCCCHHHHHhcCcccCCEE
Confidence 4689999865 6655566666556 599999999876533322 1 37789999876421 2579998
Q ss_pred Ee
Q psy17734 419 VS 420 (626)
Q Consensus 419 VS 420 (626)
|.
T Consensus 76 i~ 77 (140)
T 3fwz_A 76 IL 77 (140)
T ss_dssp EE
T ss_pred EE
Confidence 87
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=89.74 E-value=0.63 Score=47.43 Aligned_cols=87 Identities=17% Similarity=0.089 Sum_probs=53.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMV 419 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIV 419 (626)
.++.+||..|+ |.++.++++.++..|+ +|++++ ++.-. .+++ .|- -.+++ |.+++ ...+|+++
T Consensus 141 ~~g~~VlV~Ga--G~vG~~a~qlak~~Ga--~Vi~~~-~~~~~~~~~~----lGa----~~v~~-d~~~v--~~g~Dvv~ 204 (315)
T 3goh_A 141 TKQREVLIVGF--GAVNNLLTQMLNNAGY--VVDLVS-ASLSQALAAK----RGV----RHLYR-EPSQV--TQKYFAIF 204 (315)
T ss_dssp CSCCEEEEECC--SHHHHHHHHHHHHHTC--EEEEEC-SSCCHHHHHH----HTE----EEEES-SGGGC--CSCEEEEE
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCC--EEEEEE-ChhhHHHHHH----cCC----CEEEc-CHHHh--CCCccEEE
Confidence 36789999999 7788888888888885 999999 76433 3322 232 12232 43344 57899987
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
- ..|. +. +..+.+.|+++|.++-.
T Consensus 205 d-~~g~----~~----~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 205 D-AVNS----QN----AAALVPSLKANGHIICI 228 (315)
T ss_dssp C-C---------------TTGGGEEEEEEEEEE
T ss_pred E-CCCc----hh----HHHHHHHhcCCCEEEEE
Confidence 4 2221 11 23345789999987643
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=89.66 E-value=1.2 Score=46.15 Aligned_cols=89 Identities=16% Similarity=0.219 Sum_probs=55.7
Q ss_pred CEEEEEcCCCchHHHHH-HHHH-hhcCCccEEEEEeCCHH---HH-HHHHHHHHcCCCCCcEEEEEecccccCC----CC
Q psy17734 344 TTIMVVGAGRGPLVTAS-LNAA-KEANRKVRVYAVEKNMS---AV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA----PE 413 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~a-l~Aa-~~~g~~~~V~AVE~np~---a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~----p~ 413 (626)
.+||.+|+ |.++.++ ++.+ +..|+ .+|++++.++. -. .++ ..| .+.+..+-.++.. ..
T Consensus 174 ~~VlV~Ga--G~vG~~a~iqla~k~~Ga-~~Vi~~~~~~~~~~~~~~~~----~lG-----a~~v~~~~~~~~~i~~~~g 241 (357)
T 2b5w_A 174 SSAFVLGN--GSLGLLTLAMLKVDDKGY-ENLYCLGRRDRPDPTIDIIE----ELD-----ATYVDSRQTPVEDVPDVYE 241 (357)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHCTTCC-CEEEEEECCCSSCHHHHHHH----HTT-----CEEEETTTSCGGGHHHHSC
T ss_pred CEEEEECC--CHHHHHHHHHHHHHHcCC-cEEEEEeCCcccHHHHHHHH----HcC-----CcccCCCccCHHHHHHhCC
Confidence 79999997 7898888 8888 77775 25999999865 33 322 222 2222211111110 12
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+|+++- ..| .+..+..+.+.|+++|.++--
T Consensus 242 g~Dvvid-~~g-------~~~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 242 QMDFIYE-ATG-------FPKHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp CEEEEEE-CSC-------CHHHHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEE-CCC-------ChHHHHHHHHHHhcCCEEEEE
Confidence 6898874 222 244677778899999988754
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.42 E-value=1.6 Score=44.16 Aligned_cols=73 Identities=12% Similarity=0.138 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC----------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA---------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~---------- 411 (626)
+++++|+-|+++|+ +...+++..+.|+ +|+.++.++...... .++ ++.+ +..+.+|+.+...
T Consensus 28 ~gKvalVTGas~GI-G~aiA~~la~~Ga--~V~i~~r~~~~l~~~--~~~--~g~~-~~~~~~Dv~~~~~v~~~~~~~~~ 99 (273)
T 4fgs_A 28 NAKIAVITGATSGI-GLAAAKRFVAEGA--RVFITGRRKDVLDAA--IAE--IGGG-AVGIQADSANLAELDRLYEKVKA 99 (273)
T ss_dssp TTCEEEEESCSSHH-HHHHHHHHHHTTC--EEEEEESCHHHHHHH--HHH--HCTT-CEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHH-HHHHHHHHHHCCC--EEEEEECCHHHHHHH--HHH--cCCC-eEEEEecCCCHHHHHHHHHHHHH
Confidence 67899999998884 5555555555674 999999997654221 111 1344 8889999987541
Q ss_pred -CCCccEEEecc
Q psy17734 412 -PEKADIMVSEL 422 (626)
Q Consensus 412 -p~k~DiIVSEl 422 (626)
-+++|++|.+-
T Consensus 100 ~~G~iDiLVNNA 111 (273)
T 4fgs_A 100 EAGRIDVLFVNA 111 (273)
T ss_dssp HHSCEEEEEECC
T ss_pred HcCCCCEEEECC
Confidence 16899999864
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.28 E-value=0.91 Score=46.53 Aligned_cols=71 Identities=10% Similarity=0.011 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccE-EEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-----CCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVR-VYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-----EKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~-V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-----~k~ 415 (626)
...+|+|+-||.|.++..+.+ +|.+.. |+|+|.++.|..+.+. | +. +..++.+|++++... ..+
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~----aG~~~~~v~a~E~d~~a~~ty~~---N-~~--~~~~~~~DI~~i~~~~i~~~~~~ 84 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKD----LGIQVDRYIASEVCEDSITVGMV---R-HQ--GKIMYVGDVRSVTQKHIQEWGPF 84 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHH----TTBCEEEEEEECCCHHHHHHHHH---H-TT--TCEEEECCGGGCCHHHHHHTCCC
T ss_pred CCCEEEEeCcCccHHHHHHHH----CCCccceEEEEECCHHHHHHHHH---h-CC--CCceeCCChHHccHHHhcccCCc
Confidence 457899999999999864333 443333 7999999988755443 2 12 256788999988632 369
Q ss_pred cEEEecc
Q psy17734 416 DIMVSEL 422 (626)
Q Consensus 416 DiIVSEl 422 (626)
|+++.-.
T Consensus 85 Dll~ggp 91 (295)
T 2qrv_A 85 DLVIGGS 91 (295)
T ss_dssp SEEEECC
T ss_pred CEEEecC
Confidence 9998754
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=89.18 E-value=0.58 Score=48.08 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=48.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC--CCccEEEec
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP--EKADIMVSE 421 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p--~k~DiIVSE 421 (626)
.+|+|+-||-|.++.-+ +.+|. ..|.|+|.++.|..+.+. | +. -+++.+|++++... .++|+++.-
T Consensus 1 mkvidLFsG~GG~~~G~----~~aG~-~~v~a~e~d~~a~~ty~~---N-~~---~~~~~~DI~~i~~~~~~~~D~l~gg 68 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGF----QKAGF-RIICANEYDKSIWKTYES---N-HS---AKLIKGDISKISSDEFPKCDGIIGG 68 (331)
T ss_dssp CEEEEESCTTCHHHHHH----HHTTC-EEEEEEECCTTTHHHHHH---H-CC---SEEEESCGGGCCGGGSCCCSEEECC
T ss_pred CeEEEeCcCccHHHHHH----HHCCC-EEEEEEeCCHHHHHHHHH---H-CC---CCcccCChhhCCHhhCCcccEEEec
Confidence 36899999999998543 33454 368899999988755443 2 22 35788999998643 479999874
Q ss_pred c
Q psy17734 422 L 422 (626)
Q Consensus 422 l 422 (626)
.
T Consensus 69 p 69 (331)
T 3ubt_Y 69 P 69 (331)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=89.12 E-value=1.1 Score=46.94 Aligned_cols=93 Identities=15% Similarity=0.133 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec--ccccC------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED--MRTWN------APE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D--~~~~~------~p~ 413 (626)
++.+||.+|+ |.++.++++.++..|+ .+|+++|.++.-....+ +.|. . . ++..+ -.++. ...
T Consensus 193 ~g~~VlV~Ga--G~vG~~a~q~a~~~Ga-~~Vi~~~~~~~~~~~a~---~lGa--~-~-vi~~~~~~~~~~~~i~~~~~g 262 (378)
T 3uko_A 193 PGSNVAIFGL--GTVGLAVAEGAKTAGA-SRIIGIDIDSKKYETAK---KFGV--N-E-FVNPKDHDKPIQEVIVDLTDG 262 (378)
T ss_dssp TTCCEEEECC--SHHHHHHHHHHHHHTC-SCEEEECSCTTHHHHHH---TTTC--C-E-EECGGGCSSCHHHHHHHHTTS
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHH---HcCC--c-E-EEccccCchhHHHHHHHhcCC
Confidence 5678999997 6788888888887785 38999998875432221 2232 1 2 23221 11111 124
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccC-cEEEec
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKED-GISIPY 452 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~Lkpg-Gi~IP~ 452 (626)
.+|+++- .. ..++.++.+.+.|+++ |.++--
T Consensus 263 g~D~vid-~~-------g~~~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 263 GVDYSFE-CI-------GNVSVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp CBSEEEE-CS-------CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred CCCEEEE-CC-------CCHHHHHHHHHHhhccCCEEEEE
Confidence 7999974 22 2356788888899996 987743
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=88.74 E-value=0.88 Score=46.97 Aligned_cols=92 Identities=17% Similarity=0.154 Sum_probs=58.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-------CCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-------NAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-------~~p~k 414 (626)
++.+||..|+ |.++.++++.++..|. .+|+++|.++.-....+ ..|-. . ++..+- ++ .....
T Consensus 171 ~g~~vlv~Ga--G~vG~~a~qla~~~g~-~~Vi~~~~~~~~~~~~~---~lGa~---~-~i~~~~-~~~~~v~~~t~g~g 239 (345)
T 3jv7_A 171 PGSTAVVIGV--GGLGHVGIQILRAVSA-ARVIAVDLDDDRLALAR---EVGAD---A-AVKSGA-GAADAIRELTGGQG 239 (345)
T ss_dssp TTCEEEEECC--SHHHHHHHHHHHHHCC-CEEEEEESCHHHHHHHH---HTTCS---E-EEECST-THHHHHHHHHGGGC
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHH---HcCCC---E-EEcCCC-cHHHHHHHHhCCCC
Confidence 5789999997 5677777888876633 49999999985442222 22321 2 232221 11 11237
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+|+++- .. ..++.++.+.+.|+++|.++--
T Consensus 240 ~d~v~d-~~-------G~~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 240 ATAVFD-FV-------GAQSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp EEEEEE-SS-------CCHHHHHHHHHHEEEEEEEEEC
T ss_pred CeEEEE-CC-------CCHHHHHHHHHHHhcCCEEEEE
Confidence 999875 22 2345778888899999988744
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.72 E-value=0.91 Score=47.61 Aligned_cols=89 Identities=18% Similarity=0.134 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEec----ccccCCCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSED----MRTWNAPEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D----~~~~~~p~k~D 416 (626)
++.+||++|+ |.++.++++.++..|+ +|++++.++... .+++ .|- -.++..+ .+++. ..+|
T Consensus 194 ~g~~VlV~Ga--G~vG~~aiqlak~~Ga--~Vi~~~~~~~~~~~a~~----lGa----~~vi~~~~~~~~~~~~--~g~D 259 (369)
T 1uuf_A 194 PGKKVGVVGI--GGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKA----LGA----DEVVNSRNADEMAAHL--KSFD 259 (369)
T ss_dssp TTCEEEEECC--SHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHH----HTC----SEEEETTCHHHHHTTT--TCEE
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH----cCC----cEEeccccHHHHHHhh--cCCC
Confidence 5679999997 4688778888887785 799999987544 3322 232 1223221 12222 5799
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+++- ..| ..+ .+..+.+.|+++|.++--
T Consensus 260 vvid-~~g---~~~----~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 260 FILN-TVA---APH----NLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp EEEE-CCS---SCC----CHHHHHTTEEEEEEEEEC
T ss_pred EEEE-CCC---CHH----HHHHHHHHhccCCEEEEe
Confidence 9875 222 222 355566789999987743
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=88.71 E-value=1.1 Score=46.19 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=53.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc-------CCC
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW-------NAP 412 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~-------~~p 412 (626)
.++.+||..|||. .++.++++.++..|+ +|++++.++... .+++ .+- . . ++..+-.++ ...
T Consensus 143 ~~g~~VlV~Ga~g-~iG~~~~~~a~~~Ga--~Vi~~~~~~~~~~~~~~----lga--~-~-~~~~~~~~~~~~~~~~~~~ 211 (340)
T 3gms_A 143 QRNDVLLVNACGS-AIGHLFAQLSQILNF--RLIAVTRNNKHTEELLR----LGA--A-Y-VIDTSTAPLYETVMELTNG 211 (340)
T ss_dssp CTTCEEEESSTTS-HHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHH----HTC--S-E-EEETTTSCHHHHHHHHTTT
T ss_pred CCCCEEEEeCCcc-HHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHh----CCC--c-E-EEeCCcccHHHHHHHHhCC
Confidence 3678999999874 445555677776774 899999887543 3322 232 1 2 222211111 122
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..+|+++-. .| .+.... ..+.|+++|.++--
T Consensus 212 ~g~Dvvid~-~g-------~~~~~~-~~~~l~~~G~iv~~ 242 (340)
T 3gms_A 212 IGADAAIDS-IG-------GPDGNE-LAFSLRPNGHFLTI 242 (340)
T ss_dssp SCEEEEEES-SC-------HHHHHH-HHHTEEEEEEEEEC
T ss_pred CCCcEEEEC-CC-------ChhHHH-HHHHhcCCCEEEEE
Confidence 479999752 22 233333 33789999998754
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=88.52 E-value=0.31 Score=50.62 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=58.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-------CCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-------NAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-------~~p~k 414 (626)
++.+||.+|+ |.++..+++.++..|+ .+|++++.++......+. .+. + .++..+-.++ .....
T Consensus 167 ~g~~VlV~Ga--G~vG~~~~q~a~~~Ga-~~Vi~~~~~~~~~~~~~~---~Ga-~---~~~~~~~~~~~~~v~~~~~g~g 236 (348)
T 2d8a_A 167 SGKSVLITGA--GPLGLLGIAVAKASGA-YPVIVSEPSDFRRELAKK---VGA-D---YVINPFEEDVVKEVMDITDGNG 236 (348)
T ss_dssp TTCCEEEECC--SHHHHHHHHHHHHTTC-CSEEEECSCHHHHHHHHH---HTC-S---EEECTTTSCHHHHHHHHTTTSC
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH---hCC-C---EEECCCCcCHHHHHHHHcCCCC
Confidence 5678999998 6788888888887774 289999999754422222 232 1 1222211111 11236
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+|+++.- .| .++.+..+.+.|+++|.++--
T Consensus 237 ~D~vid~-~g-------~~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 237 VDVFLEF-SG-------APKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp EEEEEEC-SC-------CHHHHHHHHHHEEEEEEEEEC
T ss_pred CCEEEEC-CC-------CHHHHHHHHHHHhcCCEEEEE
Confidence 9999752 11 245677778899999987743
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.14 E-value=1.7 Score=45.66 Aligned_cols=93 Identities=16% Similarity=0.181 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec---ccc-------cCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED---MRT-------WNA 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D---~~~-------~~~ 411 (626)
++.+||..|+ |.++.++++.++..|+ .+|++++.++......+ ..|- -.++..+ -.+ ...
T Consensus 195 ~g~~VlV~Ga--G~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~~~---~lGa----~~vi~~~~~~~~~~~~~v~~~~~ 264 (380)
T 1vj0_A 195 AGKTVVIQGA--GPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAE---EIGA----DLTLNRRETSVEERRKAIMDITH 264 (380)
T ss_dssp BTCEEEEECC--SHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHH---HTTC----SEEEETTTSCHHHHHHHHHHHTT
T ss_pred CCCEEEEECc--CHHHHHHHHHHHHcCC-ceEEEEcCCHHHHHHHH---HcCC----cEEEeccccCcchHHHHHHHHhC
Confidence 5679999994 6788888888887773 39999999975442222 2232 1223322 111 111
Q ss_pred CCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 412 PEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 412 p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
...+|+++- ..| .++.+..+.+.|+++|.++--
T Consensus 265 g~g~Dvvid-~~g-------~~~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 265 GRGADFILE-ATG-------DSRALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp TSCEEEEEE-CSS-------CTTHHHHHHHHEEEEEEEEEC
T ss_pred CCCCcEEEE-CCC-------CHHHHHHHHHHHhcCCEEEEE
Confidence 236999874 222 133567777889999987743
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=87.82 E-value=2.1 Score=44.57 Aligned_cols=93 Identities=16% Similarity=0.118 Sum_probs=57.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecc--cccC------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDM--RTWN------APE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~--~~~~------~p~ 413 (626)
++.+||++|+ |.++.++++.++..|+ .+|++++.++......+ ..|.. .++..+- .++. ...
T Consensus 191 ~g~~VlV~Ga--G~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~---~lGa~----~vi~~~~~~~~~~~~i~~~t~g 260 (373)
T 1p0f_A 191 PGSTCAVFGL--GGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAI---ELGAT----ECLNPKDYDKPIYEVICEKTNG 260 (373)
T ss_dssp TTCEEEEECC--SHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHH---HTTCS----EEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHH---HcCCc----EEEecccccchHHHHHHHHhCC
Confidence 5679999986 6788888888887775 38999999875432222 22321 1222111 1111 113
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccC-cEEEec
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKED-GISIPY 452 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~Lkpg-Gi~IP~ 452 (626)
.+|+++- ..| .++.+..+.+.|+++ |.++--
T Consensus 261 g~Dvvid-~~g-------~~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 261 GVDYAVE-CAG-------RIETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp CBSEEEE-CSC-------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred CCCEEEE-CCC-------CHHHHHHHHHHHhcCCCEEEEE
Confidence 7999874 222 255677778899999 987743
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=87.23 E-value=2.2 Score=44.53 Aligned_cols=93 Identities=17% Similarity=0.095 Sum_probs=58.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecc--cccC------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDM--RTWN------APE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~--~~~~------~p~ 413 (626)
++.+||++|+ |.++.++++.++..|+ .+|++++.++......+ ..|.. . ++..+- .++. ...
T Consensus 195 ~g~~VlV~Ga--G~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~a~---~lGa~---~-vi~~~~~~~~~~~~v~~~~~~ 264 (376)
T 1e3i_A 195 PGSTCAVFGL--GCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAK---ALGAT---D-CLNPRELDKPVQDVITELTAG 264 (376)
T ss_dssp TTCEEEEECC--SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHH---HTTCS---E-EECGGGCSSCHHHHHHHHHTS
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHH---HhCCc---E-EEccccccchHHHHHHHHhCC
Confidence 5679999986 6788888888888785 38999999875432222 22321 1 222110 1111 013
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccC-cEEEec
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKED-GISIPY 452 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~Lkpg-Gi~IP~ 452 (626)
.+|+++- ..| .++.+..+.+.|+++ |.++--
T Consensus 265 g~Dvvid-~~G-------~~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 265 GVDYSLD-CAG-------TAQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp CBSEEEE-SSC-------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred CccEEEE-CCC-------CHHHHHHHHHHhhcCCCEEEEE
Confidence 7999874 222 255777788899999 987743
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=87.17 E-value=0.94 Score=48.93 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=32.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCC-ccEEEEEeCCHHHH
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANR-KVRVYAVEKNMSAV 383 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~-~~~V~AVE~np~a~ 383 (626)
..|+++|+|+|.|..-.+++.+..+. ..+++.||.||...
T Consensus 139 ~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr 179 (432)
T 4f3n_A 139 RRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELR 179 (432)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSH
T ss_pred CeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHH
Confidence 68999999999999888888765442 24899999998655
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=87.17 E-value=2.7 Score=43.76 Aligned_cols=92 Identities=16% Similarity=0.119 Sum_probs=56.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-------CCCC
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-------NAPE 413 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-------~~p~ 413 (626)
.++.+||..|+ |.++.++++.++..|+ +|++++.++......+. .|-. .++..+-.++ ....
T Consensus 188 ~~g~~VlV~G~--G~vG~~a~qla~~~Ga--~Vi~~~~~~~~~~~~~~---lGa~----~vi~~~~~~~~~~v~~~~~g~ 256 (363)
T 3uog_A 188 RAGDRVVVQGT--GGVALFGLQIAKATGA--EVIVTSSSREKLDRAFA---LGAD----HGINRLEEDWVERVYALTGDR 256 (363)
T ss_dssp CTTCEEEEESS--BHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHH---HTCS----EEEETTTSCHHHHHHHHHTTC
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCC--EEEEEecCchhHHHHHH---cCCC----EEEcCCcccHHHHHHHHhCCC
Confidence 36789999995 5788888888888885 99999999754422222 2321 2233221222 1124
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+|+++-- .| .+ .+..+.+.|+++|.++--
T Consensus 257 g~D~vid~-~g----~~----~~~~~~~~l~~~G~iv~~ 286 (363)
T 3uog_A 257 GADHILEI-AG----GA----GLGQSLKAVAPDGRISVI 286 (363)
T ss_dssp CEEEEEEE-TT----SS----CHHHHHHHEEEEEEEEEE
T ss_pred CceEEEEC-CC----hH----HHHHHHHHhhcCCEEEEE
Confidence 79998752 22 23 355566789999987743
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=87.15 E-value=2.8 Score=43.68 Aligned_cols=92 Identities=20% Similarity=0.230 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecc--cccC------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDM--RTWN------APE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~--~~~~------~p~ 413 (626)
++.+||++|+ |.++.++++.++..|+ .+|++++.++......+ ..|.. .++..+- .++. ...
T Consensus 191 ~g~~VlV~Ga--G~vG~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~---~lGa~----~vi~~~~~~~~~~~~~~~~~~~ 260 (374)
T 2jhf_A 191 QGSTCAVFGL--GGVGLSVIMGCKAAGA-ARIIGVDINKDKFAKAK---EVGAT----ECVNPQDYKKPIQEVLTEMSNG 260 (374)
T ss_dssp TTCEEEEECC--SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHH---HTTCS----EEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHH---HhCCc----eEecccccchhHHHHHHHHhCC
Confidence 5679999996 6788888888887775 38999999875442222 22321 1222110 1111 113
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccC-cEEEe
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKED-GISIP 451 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~Lkpg-Gi~IP 451 (626)
.+|+++- ..| .++.+..+.+.|+++ |.++-
T Consensus 261 g~D~vid-~~g-------~~~~~~~~~~~l~~~~G~iv~ 291 (374)
T 2jhf_A 261 GVDFSFE-VIG-------RLDTMVTALSCCQEAYGVSVI 291 (374)
T ss_dssp CBSEEEE-CSC-------CHHHHHHHHHHBCTTTCEEEE
T ss_pred CCcEEEE-CCC-------CHHHHHHHHHHhhcCCcEEEE
Confidence 7999874 222 255677778899999 98774
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=87.04 E-value=2.8 Score=43.64 Aligned_cols=92 Identities=17% Similarity=0.154 Sum_probs=57.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecc--cccC------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDM--RTWN------APE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~--~~~~------~p~ 413 (626)
++.+||+.|+ |.++.++++.++..|+ .+|++++.++......+. .|.. . ++..+- .++. ...
T Consensus 190 ~g~~VlV~Ga--G~vG~~avqla~~~Ga-~~Vi~~~~~~~~~~~~~~---lGa~---~-vi~~~~~~~~~~~~v~~~~~~ 259 (373)
T 2fzw_A 190 PGSVCAVFGL--GGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKE---FGAT---E-CINPQDFSKPIQEVLIEMTDG 259 (373)
T ss_dssp TTCEEEEECC--SHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHH---HTCS---E-EECGGGCSSCHHHHHHHHTTS
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH---cCCc---e-EeccccccccHHHHHHHHhCC
Confidence 5679999996 6788878888887775 389999998754422222 2321 1 222110 1111 113
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccC-cEEEe
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKED-GISIP 451 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~Lkpg-Gi~IP 451 (626)
.+|+++- ..| .++.+..+.+.|+++ |.++-
T Consensus 260 g~D~vid-~~g-------~~~~~~~~~~~l~~~~G~iv~ 290 (373)
T 2fzw_A 260 GVDYSFE-CIG-------NVKVMRAALEACHKGWGVSVV 290 (373)
T ss_dssp CBSEEEE-CSC-------CHHHHHHHHHTBCTTTCEEEE
T ss_pred CCCEEEE-CCC-------cHHHHHHHHHhhccCCcEEEE
Confidence 7999874 222 245677778899999 98774
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=86.90 E-value=2.5 Score=39.57 Aligned_cols=89 Identities=18% Similarity=0.178 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc---------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW---------NAP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~---------~~p 412 (626)
++++||+.|++ |.++..+++.++..|. +|++++.++...... +..+. . . ++ |..+- ...
T Consensus 38 ~g~~vlV~Ga~-ggiG~~~~~~~~~~G~--~V~~~~~~~~~~~~~---~~~g~--~-~-~~--d~~~~~~~~~~~~~~~~ 105 (198)
T 1pqw_A 38 PGERVLIHSAT-GGVGMAAVSIAKMIGA--RIYTTAGSDAKREML---SRLGV--E-Y-VG--DSRSVDFADEILELTDG 105 (198)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHHTC--EEEEEESSHHHHHHH---HTTCC--S-E-EE--ETTCSTHHHHHHHHTTT
T ss_pred CCCEEEEeeCC-ChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHH---HHcCC--C-E-Ee--eCCcHHHHHHHHHHhCC
Confidence 56899999964 4455556666666674 899999987544222 11222 1 2 22 22221 112
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
..+|++|... | ++.+....+.|+++|.++-
T Consensus 106 ~~~D~vi~~~-g--------~~~~~~~~~~l~~~G~~v~ 135 (198)
T 1pqw_A 106 YGVDVVLNSL-A--------GEAIQRGVQILAPGGRFIE 135 (198)
T ss_dssp CCEEEEEECC-C--------THHHHHHHHTEEEEEEEEE
T ss_pred CCCeEEEECC-c--------hHHHHHHHHHhccCCEEEE
Confidence 3699998632 2 2456677788999998774
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=86.88 E-value=3.6 Score=43.47 Aligned_cols=95 Identities=13% Similarity=0.105 Sum_probs=57.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-------CCCC
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-------NAPE 413 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-------~~p~ 413 (626)
.++.+||..|+ |.++.++++.++..|+ .+|++++.++.-....+. .|- -.++..+-.++ ....
T Consensus 212 ~~g~~VlV~Ga--G~vG~~aiqlak~~Ga-~~Vi~~~~~~~~~~~~~~---lGa----~~vi~~~~~~~~~~i~~~t~g~ 281 (404)
T 3ip1_A 212 RPGDNVVILGG--GPIGLAAVAILKHAGA-SKVILSEPSEVRRNLAKE---LGA----DHVIDPTKENFVEAVLDYTNGL 281 (404)
T ss_dssp CTTCEEEEECC--SHHHHHHHHHHHHTTC-SEEEEECSCHHHHHHHHH---HTC----SEEECTTTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH---cCC----CEEEcCCCCCHHHHHHHHhCCC
Confidence 36789999997 6788888898888885 399999999854422222 232 12232221121 1224
Q ss_pred CccEEEeccccccCCCCCcH-HHHHHHHHhc----ccCcEEEecc
Q psy17734 414 KADIMVSELLGSFGDNELSP-ECLYAAQKYL----KEDGISIPYN 453 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~p-e~L~~~~r~L----kpgGi~IP~~ 453 (626)
.+|+++- ..| .+ ..+..+.+.| +++|.++--.
T Consensus 282 g~D~vid-~~g-------~~~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 282 GAKLFLE-ATG-------VPQLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp CCSEEEE-CSS-------CHHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred CCCEEEE-CCC-------CcHHHHHHHHHHHHhccCCCcEEEEeC
Confidence 6999974 222 12 2444444555 9999887543
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=86.72 E-value=2 Score=44.38 Aligned_cols=93 Identities=23% Similarity=0.240 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhc-CCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccc-------cCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEA-NRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT-------WNAPE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~-g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~-------~~~p~ 413 (626)
++.+||+.|+|. .++..+++.++.. |+ +|++++.++......+. .+- . .. +...-.+ +....
T Consensus 170 ~g~~vlV~Gagg-~iG~~~~~~a~~~~Ga--~Vi~~~~~~~~~~~~~~---~g~--~-~~-~~~~~~~~~~~~~~~~~~~ 239 (347)
T 1jvb_A 170 PTKTLLVVGAGG-GLGTMAVQIAKAVSGA--TIIGVDVREEAVEAAKR---AGA--D-YV-INASMQDPLAEIRRITESK 239 (347)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHHTCC--EEEEEESSHHHHHHHHH---HTC--S-EE-EETTTSCHHHHHHHHTTTS
T ss_pred CCCEEEEECCCc-cHHHHHHHHHHHcCCC--eEEEEcCCHHHHHHHHH---hCC--C-EE-ecCCCccHHHHHHHHhcCC
Confidence 568999999864 4566667777766 74 89999999755422222 232 1 22 2211111 11114
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+|++|-.. | .+..+..+.+.|+++|.++--
T Consensus 240 ~~d~vi~~~-g-------~~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 240 GVDAVIDLN-N-------SEKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp CEEEEEESC-C-------CHHHHTTGGGGEEEEEEEEEC
T ss_pred CceEEEECC-C-------CHHHHHHHHHHHhcCCEEEEE
Confidence 799988521 2 244666677889999987743
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.52 E-value=2.6 Score=43.98 Aligned_cols=93 Identities=18% Similarity=0.156 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecc--cccC------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDM--RTWN------APE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~--~~~~------~p~ 413 (626)
++.+||+.|+ |.++.++++.++..|+ .+|++++.++......+ ..|.. .++..+- .++. ...
T Consensus 192 ~g~~VlV~Ga--G~vG~~a~qla~~~Ga-~~Vi~~~~~~~~~~~~~---~lGa~----~vi~~~~~~~~~~~~~~~~~~~ 261 (374)
T 1cdo_A 192 PGSTCAVFGL--GAVGLAAVMGCHSAGA-KRIIAVDLNPDKFEKAK---VFGAT----DFVNPNDHSEPISQVLSKMTNG 261 (374)
T ss_dssp TTCEEEEECC--SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHH---HTTCC----EEECGGGCSSCHHHHHHHHHTS
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHH---HhCCc----eEEeccccchhHHHHHHHHhCC
Confidence 5679999985 6788888888887775 38999999875442222 22321 1222111 1111 013
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccC-cEEEec
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKED-GISIPY 452 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~Lkpg-Gi~IP~ 452 (626)
.+|+++- ..| .++.+..+.+.|+++ |.++--
T Consensus 262 g~D~vid-~~g-------~~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 262 GVDFSLE-CVG-------NVGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp CBSEEEE-CSC-------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred CCCEEEE-CCC-------CHHHHHHHHHHhhcCCcEEEEE
Confidence 6999875 222 245677788899999 987743
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=86.48 E-value=1.8 Score=44.48 Aligned_cols=90 Identities=18% Similarity=0.082 Sum_probs=56.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC-------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA-------PEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~-------p~k 414 (626)
++.+||..|+| .++.++++.++..|+ +|++++.++......+ ..+.. .++ |.++-.. ...
T Consensus 164 ~g~~VlV~GaG--~vG~~~~~~a~~~Ga--~Vi~~~~~~~~~~~~~---~lGa~----~~~--d~~~~~~~~~~~~~~~~ 230 (339)
T 1rjw_A 164 PGEWVAIYGIG--GLGHVAVQYAKAMGL--NVVAVDIGDEKLELAK---ELGAD----LVV--NPLKEDAAKFMKEKVGG 230 (339)
T ss_dssp TTCEEEEECCS--TTHHHHHHHHHHTTC--EEEEECSCHHHHHHHH---HTTCS----EEE--CTTTSCHHHHHHHHHSS
T ss_pred CCCEEEEECCC--HHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHH---HCCCC----EEe--cCCCccHHHHHHHHhCC
Confidence 56799999994 477777888887774 9999999975442222 22321 122 2221110 046
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+|+++-- .| .++.+....+.|+++|.++--
T Consensus 231 ~d~vid~-~g-------~~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 231 VHAAVVT-AV-------SKPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp EEEEEES-SC-------CHHHHHHHHHHEEEEEEEEEC
T ss_pred CCEEEEC-CC-------CHHHHHHHHHHhhcCCEEEEe
Confidence 8998752 12 245677777899999987743
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=86.44 E-value=2.6 Score=43.42 Aligned_cols=121 Identities=11% Similarity=0.051 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH-HHHHHcC--
Q psy17734 317 IKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL-KYKKEEQ-- 393 (626)
Q Consensus 317 ~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~-~~~~~n~-- 393 (626)
.|.....+++.+.+.. +...|+++|||-=.... +... ....+|+-|| .|..+..+ +.+...+
T Consensus 86 ~Rt~~~d~~v~~~~~~---------g~~QvV~LGaGlDTra~---Rl~~--~~~~~v~evD-~P~vi~~k~~lL~~~~~~ 150 (310)
T 2uyo_A 86 VRTNFFDTYFNNAVID---------GIRQFVILASGLDSRAY---RLDW--PTGTTVYEID-QPKVLAYKSTTLAEHGVT 150 (310)
T ss_dssp HHHHHHHHHHHHHHHT---------TCCEEEEETCTTCCHHH---HSCC--CTTCEEEEEE-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHh---------CCCeEEEeCCCCCchhh---hccC--CCCcEEEEcC-CHHHHHHHHHHHHhcCCC
Confidence 4445555666555532 23469999999765542 3221 1125899999 57665433 3443322
Q ss_pred CCCCcEEEEEecccccCC----------CCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 394 WAQSDVTIVSEDMRTWNA----------PEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 394 ~~~~nV~vi~~D~~~~~~----------p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
-.+ +..+|.+|+++ .. +.+.=++++|-+-.++..+....++..+...+.||+.++-+..
T Consensus 151 ~~~-~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~ 219 (310)
T 2uyo_A 151 PTA-DRREVPIDLRQ-DWPPALRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS 219 (310)
T ss_dssp CSS-EEEEEECCTTS-CHHHHHHHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred CCC-CeEEEecchHh-hHHHHHHhccCCCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEec
Confidence 134 49999999997 31 1345678888776666655556677777777788888776654
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=86.20 E-value=0.7 Score=48.32 Aligned_cols=92 Identities=11% Similarity=0.125 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhh-cCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec------ccccCCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKE-ANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED------MRTWNAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~-~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D------~~~~~~p~k 414 (626)
++.+||..|+ .|.++.++++.++. .| .+|++++.++.-....+ ..|- . . ++... ++++ ....
T Consensus 171 ~g~~VlV~Ga-~G~vG~~a~qlak~~~g--~~Vi~~~~~~~~~~~~~---~lGa--d-~-vi~~~~~~~~~v~~~-~~~g 239 (363)
T 4dvj_A 171 AAPAILIVGG-AGGVGSIAVQIARQRTD--LTVIATASRPETQEWVK---SLGA--H-H-VIDHSKPLAAEVAAL-GLGA 239 (363)
T ss_dssp SEEEEEEEST-TSHHHHHHHHHHHHHCC--SEEEEECSSHHHHHHHH---HTTC--S-E-EECTTSCHHHHHHTT-CSCC
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHhcC--CEEEEEeCCHHHHHHHH---HcCC--C-E-EEeCCCCHHHHHHHh-cCCC
Confidence 4678999984 35677777777775 35 49999999975442222 2232 1 1 22211 1122 2357
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+|+++- .. ..++.+..+.+.|+++|.++--
T Consensus 240 ~Dvvid-~~-------g~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 240 PAFVFS-TT-------HTDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEEEEE-CS-------CHHHHHHHHHHHSCTTCEEEEC
T ss_pred ceEEEE-CC-------CchhhHHHHHHHhcCCCEEEEE
Confidence 998874 11 2355777788899999998743
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=85.62 E-value=6.1 Score=40.42 Aligned_cols=96 Identities=20% Similarity=0.079 Sum_probs=54.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec--c----cccCCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED--M----RTWNAPEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D--~----~~~~~p~k~ 415 (626)
++.+||.+|+|.+. ..++..++..+. .+|++++.++.-.... +..+-. ..+-..+ . ++......+
T Consensus 163 ~g~~VlV~GaG~~g--~~a~~~a~~~~g-~~Vi~~~~~~~r~~~~---~~~Ga~---~~i~~~~~~~~~~v~~~t~g~g~ 233 (348)
T 4eez_A 163 PGDWQVIFGAGGLG--NLAIQYAKNVFG-AKVIAVDINQDKLNLA---KKIGAD---VTINSGDVNPVDEIKKITGGLGV 233 (348)
T ss_dssp TTCEEEEECCSHHH--HHHHHHHHHTSC-CEEEEEESCHHHHHHH---HHTTCS---EEEEC-CCCHHHHHHHHTTSSCE
T ss_pred CCCEEEEEcCCCcc--HHHHHHHHHhCC-CEEEEEECcHHHhhhh---hhcCCe---EEEeCCCCCHHHHhhhhcCCCCc
Confidence 67899999987533 334455554433 5999999998643222 222321 2222111 1 111122456
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
|.++-.. ..++.+....+.|+++|.++-...
T Consensus 234 d~~~~~~--------~~~~~~~~~~~~l~~~G~~v~~g~ 264 (348)
T 4eez_A 234 QSAIVCA--------VARIAFEQAVASLKPMGKMVAVAV 264 (348)
T ss_dssp EEEEECC--------SCHHHHHHHHHTEEEEEEEEECCC
T ss_pred eEEEEec--------cCcchhheeheeecCCceEEEEec
Confidence 7766422 235677778889999998775543
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=85.58 E-value=0.22 Score=51.59 Aligned_cols=91 Identities=11% Similarity=0.143 Sum_probs=56.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccc-------cCCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT-------WNAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~-------~~~p~k 414 (626)
++.+||..|+ |.++.++++.++..|+ .+|++++.++......+ .+.+ .++..+-.+ .. ...
T Consensus 164 ~g~~VlV~Ga--G~vG~~~~q~a~~~Ga-~~Vi~~~~~~~~~~~~~-----~la~---~v~~~~~~~~~~~~~~~~-~~g 231 (343)
T 2dq4_A 164 SGKSVLITGA--GPIGLMAAMVVRASGA-GPILVSDPNPYRLAFAR-----PYAD---RLVNPLEEDLLEVVRRVT-GSG 231 (343)
T ss_dssp TTSCEEEECC--SHHHHHHHHHHHHTTC-CSEEEECSCHHHHGGGT-----TTCS---EEECTTTSCHHHHHHHHH-SSC
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHH-----HhHH---hccCcCccCHHHHHHHhc-CCC
Confidence 5678999998 6788888888887774 28999999875431111 1111 122211111 11 346
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+|+++-- .| .++.+....+.|+++|.++--
T Consensus 232 ~D~vid~-~g-------~~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 232 VEVLLEF-SG-------NEAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp EEEEEEC-SC-------CHHHHHHHHHHEEEEEEEEEC
T ss_pred CCEEEEC-CC-------CHHHHHHHHHHHhcCCEEEEE
Confidence 9998752 22 245677778899999987743
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.57 E-value=4.4 Score=41.44 Aligned_cols=93 Identities=10% Similarity=0.044 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-------CCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-------NAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-------~~p~k 414 (626)
++.+||..|+| ..+.++++.++..|+ ..|++++.++.-....+ +.|- -.++..+-.+. .....
T Consensus 160 ~g~~VlV~GaG--~vG~~aiq~ak~~G~-~~vi~~~~~~~k~~~a~---~lGa----~~~i~~~~~~~~~~~~~~~~~~g 229 (346)
T 4a2c_A 160 ENKNVIIIGAG--TIGLLAIQCAVALGA-KSVTAIDISSEKLALAK---SFGA----MQTFNSSEMSAPQMQSVLRELRF 229 (346)
T ss_dssp TTSEEEEECCS--HHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHH---HTTC----SEEEETTTSCHHHHHHHHGGGCS
T ss_pred CCCEEEEECCC--CcchHHHHHHHHcCC-cEEEEEechHHHHHHHH---HcCC----eEEEeCCCCCHHHHHHhhcccCC
Confidence 67899999874 566777888888886 37899999985432222 2232 22333221111 11135
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+|+++- .. ..++.++.+.+.|+++|.++-.
T Consensus 230 ~d~v~d-~~-------G~~~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 230 NQLILE-TA-------GVPQTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp SEEEEE-CS-------CSHHHHHHHHHHCCTTCEEEEC
T ss_pred cccccc-cc-------cccchhhhhhheecCCeEEEEE
Confidence 677653 22 2466788888899999987743
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=85.16 E-value=1.2 Score=46.47 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=48.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC----CCccEEE
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP----EKADIMV 419 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p----~k~DiIV 419 (626)
.+++|+-||.|.++..+.+|+- +. ..|+|+|.++.|..+.+. | +. +..++.+|++++... ..+|+++
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~--~~-~~v~a~e~d~~a~~ty~~---N-~~--~~~~~~~DI~~~~~~~~~~~~~D~l~ 74 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGL--DG-EIVAAVDINTVANSVYKH---N-FP--ETNLLNRNIQQLTPQVIKKWNVDTIL 74 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTC--SE-EEEEEECCCHHHHHHHHH---H-CT--TSCEECCCGGGCCHHHHHHTTCCEEE
T ss_pred CEEEEECcCccHHHHHHHHcCC--Cc-eEEEEEeCCHHHHHHHHH---h-CC--CCceeccccccCCHHHhccCCCCEEE
Confidence 4799999999999865444431 11 268899999988754432 2 22 255778999988632 3699998
Q ss_pred ecc
Q psy17734 420 SEL 422 (626)
Q Consensus 420 SEl 422 (626)
.-.
T Consensus 75 ggp 77 (333)
T 4h0n_A 75 MSP 77 (333)
T ss_dssp ECC
T ss_pred ecC
Confidence 644
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=85.16 E-value=1.9 Score=38.04 Aligned_cols=65 Identities=18% Similarity=0.153 Sum_probs=44.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC-----CCCCccEE
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN-----APEKADIM 418 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~-----~p~k~DiI 418 (626)
++|+.+|+|+ ++..+++.....| .+|+++|.++......+. . .+.++.+|..+-. .-..+|++
T Consensus 7 ~~v~I~G~G~--iG~~la~~L~~~g--~~V~~id~~~~~~~~~~~---~-----~~~~~~gd~~~~~~l~~~~~~~~d~v 74 (141)
T 3llv_A 7 YEYIVIGSEA--AGVGLVRELTAAG--KKVLAVDKSKEKIELLED---E-----GFDAVIADPTDESFYRSLDLEGVSAV 74 (141)
T ss_dssp CSEEEECCSH--HHHHHHHHHHHTT--CCEEEEESCHHHHHHHHH---T-----TCEEEECCTTCHHHHHHSCCTTCSEE
T ss_pred CEEEEECCCH--HHHHHHHHHHHCC--CeEEEEECCHHHHHHHHH---C-----CCcEEECCCCCHHHHHhCCcccCCEE
Confidence 4689999865 7766666666666 589999999865432221 1 2778889887642 12578998
Q ss_pred Ee
Q psy17734 419 VS 420 (626)
Q Consensus 419 VS 420 (626)
|.
T Consensus 75 i~ 76 (141)
T 3llv_A 75 LI 76 (141)
T ss_dssp EE
T ss_pred EE
Confidence 86
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=84.90 E-value=0.15 Score=52.90 Aligned_cols=66 Identities=12% Similarity=0.007 Sum_probs=44.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~D 416 (626)
++.+|||--||+|..+. ||.+.|+ +.+++|.++.+. ++.+.+...+. . ...+.+|.+++...+.+|
T Consensus 252 ~~~~VlDpF~GsGtt~~----aa~~~gr--~~ig~e~~~~~~~~~~~r~~~~~~--~-~~~~~~~~~~i~~~~~~~ 318 (323)
T 1boo_A 252 PDDLVVDIFGGSNTTGL----VAERESR--KWISFEMKPEYVAASAFRFLDNNI--S-EEKITDIYNRILNGESLD 318 (323)
T ss_dssp TTCEEEETTCTTCHHHH----HHHHTTC--EEEEEESCHHHHHHHHGGGSCSCS--C-HHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEECCCCCCHHHH----HHHHcCC--CEEEEeCCHHHHHHHHHHHHhccc--c-hHHHHHHHHHHHcCCccc
Confidence 57899999999999874 4444564 999999999876 55554433322 2 555666666655434444
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=84.45 E-value=2.8 Score=42.93 Aligned_cols=93 Identities=13% Similarity=0.113 Sum_probs=57.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-------CCCC
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-------NAPE 413 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-------~~p~ 413 (626)
.++.+||..|+ .|.++.++++.++..|+ +|++++.++......+ ..+- . . ++..+-.++ ....
T Consensus 147 ~~g~~vlV~Ga-~g~iG~~~~~~a~~~Ga--~Vi~~~~~~~~~~~~~---~~ga--~-~-~~~~~~~~~~~~~~~~~~~~ 216 (334)
T 3qwb_A 147 KKGDYVLLFAA-AGGVGLILNQLLKMKGA--HTIAVASTDEKLKIAK---EYGA--E-Y-LINASKEDILRQVLKFTNGK 216 (334)
T ss_dssp CTTCEEEESST-TBHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHH---HTTC--S-E-EEETTTSCHHHHHHHHTTTS
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHH---HcCC--c-E-EEeCCCchHHHHHHHHhCCC
Confidence 36789999995 45677777888887784 8999999875442222 2231 1 2 233222221 1235
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+|+++-. .|. +.+..+.+.|+++|.++--
T Consensus 217 g~D~vid~-~g~--------~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 217 GVDASFDS-VGK--------DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp CEEEEEEC-CGG--------GGHHHHHHHEEEEEEEEEC
T ss_pred CceEEEEC-CCh--------HHHHHHHHHhccCCEEEEE
Confidence 79998752 221 2456667789999987754
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.83 E-value=3.1 Score=42.80 Aligned_cols=91 Identities=16% Similarity=0.215 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccc---ccC------CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMR---TWN------AP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~---~~~------~p 412 (626)
++.+||+.|++ |.++.++++.++..|+ +|++++.++......+ ..+- . . ++ |.. ++. ..
T Consensus 169 ~g~~vlV~Ga~-ggiG~~~~~~a~~~Ga--~V~~~~~~~~~~~~~~---~~g~--~-~-~~--d~~~~~~~~~~~~~~~~ 236 (347)
T 2hcy_A 169 AGHWVAISGAA-GGLGSLAVQYAKAMGY--RVLGIDGGEGKEELFR---SIGG--E-V-FI--DFTKEKDIVGAVLKATD 236 (347)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHTTC--EEEEEECSTTHHHHHH---HTTC--C-E-EE--ETTTCSCHHHHHHHHHT
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCC--cEEEEcCCHHHHHHHH---HcCC--c-e-EE--ecCccHhHHHHHHHHhC
Confidence 57899999973 4566666777776774 9999998865432222 2222 1 2 22 322 111 01
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..+|++|... ..++.+..+.+.|+++|.++--
T Consensus 237 ~~~D~vi~~~--------g~~~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 237 GGAHGVINVS--------VSEAAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp SCEEEEEECS--------SCHHHHHHHTTSEEEEEEEEEC
T ss_pred CCCCEEEECC--------CcHHHHHHHHHHHhcCCEEEEE
Confidence 2689998632 1345777777889999987743
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=83.74 E-value=3.5 Score=44.31 Aligned_cols=93 Identities=15% Similarity=0.100 Sum_probs=57.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccc------------
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT------------ 408 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~------------ 408 (626)
.++.+||..|+ +|.++.++++.++..|+ +|++++.++.-...++. .|-. .++...-.+
T Consensus 227 ~~g~~VlV~Ga-sG~vG~~avqlak~~Ga--~vi~~~~~~~~~~~~~~---lGa~----~vi~~~~~d~~~~~~~~~~~~ 296 (456)
T 3krt_A 227 KQGDNVLIWGA-SGGLGSYATQFALAGGA--NPICVVSSPQKAEICRA---MGAE----AIIDRNAEGYRFWKDENTQDP 296 (456)
T ss_dssp CTTCEEEETTT-TSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH---HTCC----EEEETTTTTCCSEEETTEECH
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHHcCC--eEEEEECCHHHHHHHHh---hCCc----EEEecCcCcccccccccccch
Confidence 36789999997 45778888888887884 89999988754422222 2321 122211111
Q ss_pred ------------cCCCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 409 ------------WNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 409 ------------~~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.....+|+++- ..| .+.+..+.+.|+++|.++-.
T Consensus 297 ~~~~~~~~~i~~~t~g~g~Dvvid-~~G--------~~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 297 KEWKRFGKRIRELTGGEDIDIVFE-HPG--------RETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEE-CSC--------HHHHHHHHHHEEEEEEEEES
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEE-cCC--------chhHHHHHHHhhCCcEEEEE
Confidence 111247998874 222 14567777899999988754
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=83.38 E-value=2.3 Score=44.12 Aligned_cols=92 Identities=14% Similarity=0.158 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccc-ccC--CCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMR-TWN--APEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~-~~~--~p~k~Di 417 (626)
++.+||.+|+ |.++.++++.++..|+ +|++++.++... .+++ .|- -.++..+-. ++. ....+|+
T Consensus 179 ~g~~VlV~Ga--G~vG~~~~qlak~~Ga--~Vi~~~~~~~~~~~~~~----lGa----~~v~~~~~~~~~~~~~~~~~D~ 246 (360)
T 1piw_A 179 PGKKVGIVGL--GGIGSMGTLISKAMGA--ETYVISRSSRKREDAMK----MGA----DHYIATLEEGDWGEKYFDTFDL 246 (360)
T ss_dssp TTCEEEEECC--SHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHH----HTC----SEEEEGGGTSCHHHHSCSCEEE
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHH----cCC----CEEEcCcCchHHHHHhhcCCCE
Confidence 5689999998 6788888888887785 799999886433 3322 232 122332111 110 1147999
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
++- ..|.. ..+ .+..+.+.|+++|.++-
T Consensus 247 vid-~~g~~-~~~----~~~~~~~~l~~~G~iv~ 274 (360)
T 1piw_A 247 IVV-CASSL-TDI----DFNIMPKAMKVGGRIVS 274 (360)
T ss_dssp EEE-CCSCS-TTC----CTTTGGGGEEEEEEEEE
T ss_pred EEE-CCCCC-cHH----HHHHHHHHhcCCCEEEE
Confidence 875 22210 012 23334567899998774
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=82.87 E-value=0.95 Score=47.08 Aligned_cols=70 Identities=7% Similarity=0.010 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCc-cEE-EEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC----CCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRK-VRV-YAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP----EKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~-~~V-~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p----~k~ 415 (626)
+..+|+|+.||.|.++..+. .+|.+ ..| .|+|.++.|..+.+.. +.+ . ++.+|++++... .++
T Consensus 9 ~~~~vidLFaG~GG~~~G~~----~aG~~~~~v~~a~e~d~~a~~ty~~N----~~~--~-~~~~DI~~~~~~~i~~~~~ 77 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYE----RSSININATFIPFDINEIANKIYSKN----FKE--E-VQVKNLDSISIKQIESLNC 77 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHH----HSSCCCCEEEEEECCCHHHHHHHHHH----HCC--C-CBCCCTTTCCHHHHHHTCC
T ss_pred CCCEEEEECCChhHHHHHHH----HcCCCceEEEEEEECCHHHHHHHHHH----CCC--C-cccCChhhcCHHHhccCCC
Confidence 34689999999999985433 33421 256 7999999888554432 121 2 567899888632 269
Q ss_pred cEEEecc
Q psy17734 416 DIMVSEL 422 (626)
Q Consensus 416 DiIVSEl 422 (626)
|+++.-.
T Consensus 78 Dil~ggp 84 (327)
T 3qv2_A 78 NTWFMSP 84 (327)
T ss_dssp CEEEECC
T ss_pred CEEEecC
Confidence 9998754
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=82.87 E-value=3.9 Score=41.75 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC------CCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN------APEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~------~p~k~ 415 (626)
++.+||..||+ |.++.++++.++..|+ +|++++.++....... +..+. . . ++..+-.++. ....+
T Consensus 149 ~g~~vlI~Ga~-g~iG~~~~~~a~~~Ga--~Vi~~~~~~~~~~~~~--~~~g~--~-~-~~~~~~~~~~~~~~~~~~~~~ 219 (336)
T 4b7c_A 149 NGETVVISGAA-GAVGSVAGQIARLKGC--RVVGIAGGAEKCRFLV--EELGF--D-G-AIDYKNEDLAAGLKRECPKGI 219 (336)
T ss_dssp TTCEEEESSTT-SHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHH--HTTCC--S-E-EEETTTSCHHHHHHHHCTTCE
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHH--HHcCC--C-E-EEECCCHHHHHHHHHhcCCCc
Confidence 67899999983 4566667788877774 9999999875432220 11222 1 2 2221111110 12469
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
|+++-. .| .+.+..+.+.|+++|.++--
T Consensus 220 d~vi~~-~g--------~~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 220 DVFFDN-VG--------GEILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp EEEEES-SC--------HHHHHHHHTTEEEEEEEEEC
T ss_pred eEEEEC-CC--------cchHHHHHHHHhhCCEEEEE
Confidence 998752 22 13677777899999988743
|
| >3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A | Back alignment and structure |
|---|
Probab=82.73 E-value=3.8 Score=41.12 Aligned_cols=193 Identities=14% Similarity=0.130 Sum_probs=106.2
Q ss_pred EEeecCCCC--CCHHHHHHHHHhCCccEEEecCCCcccccc-cccccccccCCCCcccccCCCCCcCccceEEEecCCcc
Q psy17734 9 SVGLEYPTC--YNIQSQIESLAAECFDYAVLPLVHPRFARH-KDVDRYRVFGLPEAQVQSLSSICPQWLKLIVCDIQCKL 85 (626)
Q Consensus 9 ~~g~~~~~~--~~~~~~~~~~~~~~~df~~~pi~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~s~w~ 85 (626)
.+|+..... .++.+.++.+.+.|||.|=+...+|+.-.. .... .....+..-+.. ..- ..+....+-.+
T Consensus 7 klG~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~-----~~~~~~~~~l~~--~gl-~~~~~h~~~~~ 78 (303)
T 3aal_A 7 KIGSHVSMSGKKMLLAASEEAASYGANTFMIYTGAPQNTKRKSIEE-----LNIEAGRQHMQA--HGI-EEIVVHAPYII 78 (303)
T ss_dssp CEEEECCCCTTTTHHHHHHHHHHTTCSEEEEESSCTTCCCCCCSGG-----GCHHHHHHHHHH--TTC-CEEEEECCTTC
T ss_pred eeceeeecCCCccHHHHHHHHHHcCCCEEEEcCCCCCccCCCCCCH-----HHHHHHHHHHHH--cCC-ceEEEeccccc
Confidence 367655443 369999999999999999996666542111 0000 000000000211 111 12223333345
Q ss_pred cccCCcc-HHHHHHHHHHHHHHHhhhhhhCCCeEEEcC---CCC----ChhhHHHHHHHHhccCCceEEEEEeeccCCCc
Q psy17734 86 KDFESKY-VERRDHAKDLLHQELEYITYLGIPFIVVSL---DQP----DFCNFARTLYAHSEKNMSYTAWIKVPIRPVDT 157 (626)
Q Consensus 86 ~~~ds~~-~~~~~~s~~~l~~e~~~a~~~g~~~~i~~~---~~~----~~~~~ar~~~~~~~~~~~~~~~i~~p~~~~~~ 157 (626)
++-|+| +.+|+.+.+.+++.+.+|.-+|.+.|++.+ ... ...++++.++........+.+-|+ -...
T Consensus 79 -nl~s~d~~~~r~~~~~~~~~~i~~A~~lGa~~vv~h~g~~~~~~~~~~~~~~~~~l~~l~~~a~gv~l~lE--n~~~-- 153 (303)
T 3aal_A 79 -NIGNTTNLDTFSLGVDFLRAEIERTEAIGAKQLVLHPGAHVGAGVEAGLRQIIRGLNEVLTREQNVQIALE--TMAG-- 153 (303)
T ss_dssp -CTTCSSCHHHHHHHHHHHHHHHHHHHHHTCSEEEECCEECTTSCHHHHHHHHHHHHHHHCCSSCSCEEEEE--CCCC--
T ss_pred -cCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEe--cCCC--
Confidence 889999 999999999999999999999999998832 111 123345556554422222333332 1100
Q ss_pred cccccCCCCCCccchHHHHHHHHHhcCCCCceEEEEEecC------CCC--CHhHHhHh---hc-ccceEEEeccc
Q psy17734 158 SMLRQQEEEPSSQDTWRWWNMFRSVTNYHSKFELALEING------DIC--DDHELTRW---LG-EPLRCVFIPTH 221 (626)
Q Consensus 158 ~~~~~~~~~~~~~~~w~~W~~~r~~c~~~~~l~v~L~l~~------~~p--~~~~~~rW---~~-EPv~~~~i~~~ 221 (626)
.......+-+....+-..++.++++++.|++.- ++. ....+++| +| +-|+.+-+.-+
T Consensus 154 -------~~~~~~~t~~~~~~li~~v~~~~~vg~~lD~~H~~~~g~d~~~~~~~~l~~~~~~~g~~~i~~vHl~D~ 222 (303)
T 3aal_A 154 -------KGSECGRTFEELAYIIDGVAYNDKLSVCFDTCHTHDAGYDIVNDFDGVLEEFDRIIGLGRLKVLHINDS 222 (303)
T ss_dssp -------CTTEECSSHHHHHHHHHHCTTGGGEEEEEEHHHHHHHTCCHHHHHHHHHHHHHHHTCGGGEEEEEECEE
T ss_pred -------CCCccCCCHHHHHHHHHhcCCCCCEEEEEEccCHhhhCCChhhhHHHHHHHHHHhcCcccEEEEEeeCC
Confidence 000001133444444455666678999999862 111 12345544 34 77888887654
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=82.71 E-value=5.7 Score=40.48 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=55.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccc---cC------CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT---WN------AP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~---~~------~p 412 (626)
++++||+.||+ |.++..+++.++..|+ +|++++.++......+. .+- . ..+ |.++ +. ..
T Consensus 145 ~g~~vlV~Ga~-ggiG~~~~~~~~~~G~--~V~~~~~~~~~~~~~~~---~g~--~-~~~---d~~~~~~~~~~~~~~~~ 212 (333)
T 1v3u_A 145 GGETVLVSAAA-GAVGSVVGQIAKLKGC--KVVGAAGSDEKIAYLKQ---IGF--D-AAF---NYKTVNSLEEALKKASP 212 (333)
T ss_dssp SSCEEEEESTT-BHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH---TTC--S-EEE---ETTSCSCHHHHHHHHCT
T ss_pred CCCEEEEecCC-CcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHh---cCC--c-EEE---ecCCHHHHHHHHHHHhC
Confidence 56899999983 4566666777777774 99999998754422222 222 1 222 3222 10 11
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..+|++|... | ...+..+.+.|+++|.++--
T Consensus 213 ~~~d~vi~~~-g--------~~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 213 DGYDCYFDNV-G--------GEFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp TCEEEEEESS-C--------HHHHHHHHTTEEEEEEEEEC
T ss_pred CCCeEEEECC-C--------hHHHHHHHHHHhcCCEEEEE
Confidence 4699998632 2 12466667889999987743
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=82.69 E-value=2.3 Score=45.60 Aligned_cols=65 Identities=12% Similarity=0.280 Sum_probs=46.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC-----CCCCccEE
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN-----APEKADIM 418 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~-----~p~k~DiI 418 (626)
..|+.+|+|+ ++..+++.....| ..|++||.|+..+..++. . ++.++.||..+.. .-+++|+|
T Consensus 5 ~~viIiG~Gr--~G~~va~~L~~~g--~~vvvId~d~~~v~~~~~---~-----g~~vi~GDat~~~~L~~agi~~A~~v 72 (413)
T 3l9w_A 5 MRVIIAGFGR--FGQITGRLLLSSG--VKMVVLDHDPDHIETLRK---F-----GMKVFYGDATRMDLLESAGAAKAEVL 72 (413)
T ss_dssp CSEEEECCSH--HHHHHHHHHHHTT--CCEEEEECCHHHHHHHHH---T-----TCCCEESCTTCHHHHHHTTTTTCSEE
T ss_pred CeEEEECCCH--HHHHHHHHHHHCC--CCEEEEECCHHHHHHHHh---C-----CCeEEEcCCCCHHHHHhcCCCccCEE
Confidence 4689999876 6655566666556 599999999977643332 1 3778999998753 12689998
Q ss_pred Ee
Q psy17734 419 VS 420 (626)
Q Consensus 419 VS 420 (626)
|.
T Consensus 73 iv 74 (413)
T 3l9w_A 73 IN 74 (413)
T ss_dssp EE
T ss_pred EE
Confidence 87
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=82.66 E-value=5.5 Score=39.99 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH-HHHHHcCCCCCcEEEE-EecccccCC----CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL-KYKKEEQWAQSDVTIV-SEDMRTWNA----PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~-~~~~~n~~~~~nV~vi-~~D~~~~~~----p~k~ 415 (626)
++++||..|+ +|.++..+++.....| .+|++++.++.....+ +.... ..+.+ ++++ .+|+++... -+++
T Consensus 10 ~~~~vlVTGa-tG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~-~~~~~-~~~~~~~D~~d~~~~~~~~~~~ 84 (342)
T 1y1p_A 10 EGSLVLVTGA-NGFVASHVVEQLLEHG--YKVRGTARSASKLANLQKRWDA-KYPGR-FETAVVEDMLKQGAYDEVIKGA 84 (342)
T ss_dssp TTCEEEEETT-TSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHHHH-HSTTT-EEEEECSCTTSTTTTTTTTTTC
T ss_pred CCCEEEEECC-ccHHHHHHHHHHHHCC--CEEEEEeCCcccHHHHHHHhhc-cCCCc-eEEEEecCCcChHHHHHHHcCC
Confidence 4678999986 6788877777666556 5999999986543211 11111 11234 9998 799887542 1478
Q ss_pred cEEEec
Q psy17734 416 DIMVSE 421 (626)
Q Consensus 416 DiIVSE 421 (626)
|+||.-
T Consensus 85 d~vih~ 90 (342)
T 1y1p_A 85 AGVAHI 90 (342)
T ss_dssp SEEEEC
T ss_pred CEEEEe
Confidence 999873
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=82.64 E-value=4 Score=34.16 Aligned_cols=69 Identities=22% Similarity=0.206 Sum_probs=46.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC----CCCCccEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN----APEKADIM 418 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~----~p~k~DiI 418 (626)
.++|+.+|+ |.++..+++.....|. .+|++++.++....... . . +++++..|..+.. .-..+|+|
T Consensus 5 ~~~v~I~G~--G~iG~~~~~~l~~~g~-~~v~~~~r~~~~~~~~~-----~--~-~~~~~~~d~~~~~~~~~~~~~~d~v 73 (118)
T 3ic5_A 5 RWNICVVGA--GKIGQMIAALLKTSSN-YSVTVADHDLAALAVLN-----R--M-GVATKQVDAKDEAGLAKALGGFDAV 73 (118)
T ss_dssp CEEEEEECC--SHHHHHHHHHHHHCSS-EEEEEEESCHHHHHHHH-----T--T-TCEEEECCTTCHHHHHHHTTTCSEE
T ss_pred cCeEEEECC--CHHHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHH-----h--C-CCcEEEecCCCHHHHHHHHcCCCEE
Confidence 468999998 6777776776665553 48999999975442222 1 2 3778888876532 11478999
Q ss_pred Eecc
Q psy17734 419 VSEL 422 (626)
Q Consensus 419 VSEl 422 (626)
|.-.
T Consensus 74 i~~~ 77 (118)
T 3ic5_A 74 ISAA 77 (118)
T ss_dssp EECS
T ss_pred EECC
Confidence 8744
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=82.55 E-value=3.6 Score=38.04 Aligned_cols=66 Identities=12% Similarity=0.205 Sum_probs=42.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhc-CCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc----CC--CCCc
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEA-NRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW----NA--PEKA 415 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~-g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~----~~--p~k~ 415 (626)
+.+|+.+|+| .++..+++..... | .+|+++|.++.....++ .. +++++.+|..+. .. -..+
T Consensus 39 ~~~v~IiG~G--~~G~~~a~~L~~~~g--~~V~vid~~~~~~~~~~---~~-----g~~~~~gd~~~~~~l~~~~~~~~a 106 (183)
T 3c85_A 39 HAQVLILGMG--RIGTGAYDELRARYG--KISLGIEIREEAAQQHR---SE-----GRNVISGDATDPDFWERILDTGHV 106 (183)
T ss_dssp TCSEEEECCS--HHHHHHHHHHHHHHC--SCEEEEESCHHHHHHHH---HT-----TCCEEECCTTCHHHHHTBCSCCCC
T ss_pred CCcEEEECCC--HHHHHHHHHHHhccC--CeEEEEECCHHHHHHHH---HC-----CCCEEEcCCCCHHHHHhccCCCCC
Confidence 4568899875 5666556666555 6 48999999986543322 12 266777776542 11 2578
Q ss_pred cEEEe
Q psy17734 416 DIMVS 420 (626)
Q Consensus 416 DiIVS 420 (626)
|+||.
T Consensus 107 d~vi~ 111 (183)
T 3c85_A 107 KLVLL 111 (183)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 99887
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=82.50 E-value=4.2 Score=40.56 Aligned_cols=75 Identities=19% Similarity=0.126 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
+++++|+-|+++|+ +...+++.++.| .+|+.++.++... .+.+.+...+ .+ +..+.+|+.+.+.
T Consensus 6 ~gKvalVTGas~GI-G~aiA~~la~~G--a~Vv~~~~~~~~~~~~~~~i~~~g--~~-~~~~~~Dvt~~~~v~~~~~~~~ 79 (254)
T 4fn4_A 6 KNKVVIVTGAGSGI-GRAIAKKFALND--SIVVAVELLEDRLNQIVQELRGMG--KE-VLGVKADVSKKKDVEEFVRRTF 79 (254)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--CC-EEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcC--Cc-EEEEEccCCCHHHHHHHHHHHH
Confidence 57899999999886 444455555566 4999999998654 4444444443 44 9999999987541
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-.+.|++|.+-
T Consensus 80 ~~~G~iDiLVNNA 92 (254)
T 4fn4_A 80 ETYSRIDVLCNNA 92 (254)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHcCCCCEEEECC
Confidence 16899999864
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=82.49 E-value=7.1 Score=40.12 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=55.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC-------CCC
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN-------APE 413 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~-------~p~ 413 (626)
.++.+||..|++ |.++.++++.++..|+ +|+++ .++......+ ..+. . . +. +-.++. ...
T Consensus 149 ~~g~~VlV~Ga~-g~iG~~~~q~a~~~Ga--~Vi~~-~~~~~~~~~~---~lGa--~-~--i~-~~~~~~~~~~~~~~~~ 215 (343)
T 3gaz_A 149 QDGQTVLIQGGG-GGVGHVAIQIALARGA--RVFAT-ARGSDLEYVR---DLGA--T-P--ID-ASREPEDYAAEHTAGQ 215 (343)
T ss_dssp CTTCEEEEETTT-SHHHHHHHHHHHHTTC--EEEEE-ECHHHHHHHH---HHTS--E-E--EE-TTSCHHHHHHHHHTTS
T ss_pred CCCCEEEEecCC-CHHHHHHHHHHHHCCC--EEEEE-eCHHHHHHHH---HcCC--C-E--ec-cCCCHHHHHHHHhcCC
Confidence 367899999953 5677777888887785 89999 7765432222 2232 1 2 33 222221 124
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+|+++- ..| .+.+..+.+.|+++|.++-.
T Consensus 216 g~D~vid-~~g--------~~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 216 GFDLVYD-TLG--------GPVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp CEEEEEE-SSC--------THHHHHHHHHEEEEEEEEES
T ss_pred CceEEEE-CCC--------cHHHHHHHHHHhcCCeEEEE
Confidence 7998875 222 13567777889999987743
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=82.39 E-value=10 Score=32.55 Aligned_cols=68 Identities=15% Similarity=0.200 Sum_probs=42.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC-----CCCCccE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN-----APEKADI 417 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~-----~p~k~Di 417 (626)
+++|+.+|+ |.++..+++...+.| .+|+++|.++......+ .. . ++.++.+|..+.. .-.++|+
T Consensus 4 ~m~i~IiG~--G~iG~~~a~~L~~~g--~~v~~~d~~~~~~~~~~---~~-~---~~~~~~~d~~~~~~l~~~~~~~~d~ 72 (140)
T 1lss_A 4 GMYIIIAGI--GRVGYTLAKSLSEKG--HDIVLIDIDKDICKKAS---AE-I---DALVINGDCTKIKTLEDAGIEDADM 72 (140)
T ss_dssp -CEEEEECC--SHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH---HH-C---SSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCC--CeEEEEECCHHHHHHHH---Hh-c---CcEEEEcCCCCHHHHHHcCcccCCE
Confidence 367899987 557666666665556 58999999986442221 11 1 2667777765431 1257999
Q ss_pred EEec
Q psy17734 418 MVSE 421 (626)
Q Consensus 418 IVSE 421 (626)
||.-
T Consensus 73 vi~~ 76 (140)
T 1lss_A 73 YIAV 76 (140)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8874
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=82.29 E-value=0.64 Score=48.13 Aligned_cols=91 Identities=23% Similarity=0.307 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-------CCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-------NAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-------~~p~k 414 (626)
++.+||..|+ +|.++.++++.++..|+ +|++++.++......+. .+- -.++..+ .++ .....
T Consensus 159 ~g~~VlV~Ga-sg~iG~~~~~~a~~~Ga--~Vi~~~~~~~~~~~~~~---~ga----~~v~~~~-~~~~~~v~~~~~~~g 227 (342)
T 4eye_A 159 AGETVLVLGA-AGGIGTAAIQIAKGMGA--KVIAVVNRTAATEFVKS---VGA----DIVLPLE-EGWAKAVREATGGAG 227 (342)
T ss_dssp TTCEEEESST-TSHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHH---HTC----SEEEESS-TTHHHHHHHHTTTSC
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHh---cCC----cEEecCc-hhHHHHHHHHhCCCC
Confidence 5789999997 35667777888887784 99999998754422222 232 1233333 222 11247
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+|+++-- .| .+ .+..+.+.|+++|.++--
T Consensus 228 ~Dvvid~-~g----~~----~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 228 VDMVVDP-IG----GP----AFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp EEEEEES-CC----------CHHHHHHTEEEEEEEEEC
T ss_pred ceEEEEC-Cc----hh----HHHHHHHhhcCCCEEEEE
Confidence 9999752 22 12 355666789999987744
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=81.98 E-value=3.1 Score=42.44 Aligned_cols=93 Identities=10% Similarity=0.088 Sum_probs=56.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-------CCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-------NAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-------~~p~k 414 (626)
++.+||..|+ +|.++.++++.++..|+ +|++++.++......+. .+- . . ++..+-.++ .....
T Consensus 140 ~g~~VlV~Ga-~g~iG~~~~~~a~~~Ga--~Vi~~~~~~~~~~~~~~---~Ga--~-~-~~~~~~~~~~~~~~~~~~~~g 209 (325)
T 3jyn_A 140 PGEIILFHAA-AGGVGSLACQWAKALGA--KLIGTVSSPEKAAHAKA---LGA--W-E-TIDYSHEDVAKRVLELTDGKK 209 (325)
T ss_dssp TTCEEEESST-TSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHH---HTC--S-E-EEETTTSCHHHHHHHHTTTCC
T ss_pred CCCEEEEEcC-CcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH---cCC--C-E-EEeCCCccHHHHHHHHhCCCC
Confidence 5789999884 35677777788877784 99999998754422222 232 1 2 232221221 11247
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
+|+++-. .| . +.+..+.+.|+++|.++--.
T Consensus 210 ~Dvvid~-~g---~-----~~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 210 CPVVYDG-VG---Q-----DTWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp EEEEEES-SC---G-----GGHHHHHTTEEEEEEEEECC
T ss_pred ceEEEEC-CC---h-----HHHHHHHHHhcCCCEEEEEe
Confidence 9998752 22 1 24566678899999887553
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=81.96 E-value=6.9 Score=36.55 Aligned_cols=65 Identities=22% Similarity=0.359 Sum_probs=46.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC--CCccEEEec
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP--EKADIMVSE 421 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p--~k~DiIVSE 421 (626)
+||..|+ +|.++..+++.....| .+|+++..++.....+ . . +++++.+|+++.... ..+|+||.-
T Consensus 2 kvlVtGa-tG~iG~~l~~~L~~~g--~~V~~~~R~~~~~~~~------~--~-~~~~~~~D~~d~~~~~~~~~d~vi~~ 68 (221)
T 3ew7_A 2 KIGIIGA-TGRAGSRILEEAKNRG--HEVTAIVRNAGKITQT------H--K-DINILQKDIFDLTLSDLSDQNVVVDA 68 (221)
T ss_dssp EEEEETT-TSHHHHHHHHHHHHTT--CEEEEEESCSHHHHHH------C--S-SSEEEECCGGGCCHHHHTTCSEEEEC
T ss_pred eEEEEcC-CchhHHHHHHHHHhCC--CEEEEEEcCchhhhhc------c--C-CCeEEeccccChhhhhhcCCCEEEEC
Confidence 5888886 6778877777766666 5999999987433211 1 3 499999999876421 568999874
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=81.46 E-value=6.2 Score=40.95 Aligned_cols=91 Identities=18% Similarity=0.124 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC------CCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN------APEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~------~p~k~ 415 (626)
++.+||..|+ +|.++.++++.++..|+ +|++++.++......+ ..+. . . ++..+-.++. ....+
T Consensus 163 ~g~~VlV~Ga-~G~iG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~~~---~~Ga--~-~-~~~~~~~~~~~~~~~~~~~g~ 232 (362)
T 2c0c_A 163 EGKKVLVTAA-AGGTGQFAMQLSKKAKC--HVIGTCSSDEKSAFLK---SLGC--D-R-PINYKTEPVGTVLKQEYPEGV 232 (362)
T ss_dssp TTCEEEETTT-TBTTHHHHHHHHHHTTC--EEEEEESSHHHHHHHH---HTTC--S-E-EEETTTSCHHHHHHHHCTTCE
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHH---HcCC--c-E-EEecCChhHHHHHHHhcCCCC
Confidence 5679999995 34466666777777774 8999999975442222 1222 1 2 2322211110 12469
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|+++-- .| ...+..+.+.|+++|.++-
T Consensus 233 D~vid~-~g--------~~~~~~~~~~l~~~G~iv~ 259 (362)
T 2c0c_A 233 DVVYES-VG--------GAMFDLAVDALATKGRLIV 259 (362)
T ss_dssp EEEEEC-SC--------THHHHHHHHHEEEEEEEEE
T ss_pred CEEEEC-CC--------HHHHHHHHHHHhcCCEEEE
Confidence 998752 22 1356777788999998764
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=81.30 E-value=7.7 Score=39.63 Aligned_cols=90 Identities=19% Similarity=0.129 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccc---ccC------CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMR---TWN------AP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~---~~~------~p 412 (626)
++.+||+.|| +|.++.++++.++..|+ +|++++.++......+ ..++.. . ++ |.+ ++. ..
T Consensus 155 ~g~~vlI~Ga-~g~iG~~~~~~a~~~G~--~V~~~~~~~~~~~~~~----~~~g~~-~-~~--d~~~~~~~~~~~~~~~~ 223 (345)
T 2j3h_A 155 EGETVYVSAA-SGAVGQLVGQLAKMMGC--YVVGSAGSKEKVDLLK----TKFGFD-D-AF--NYKEESDLTAALKRCFP 223 (345)
T ss_dssp TTCEEEESST-TSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHH----HTSCCS-E-EE--ETTSCSCSHHHHHHHCT
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHH----HHcCCc-e-EE--ecCCHHHHHHHHHHHhC
Confidence 5789999997 34566666777777774 8999999875432221 112211 2 22 222 111 12
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
..+|+++... | . +.+....+.|+++|.++-
T Consensus 224 ~~~d~vi~~~-g-------~-~~~~~~~~~l~~~G~~v~ 253 (345)
T 2j3h_A 224 NGIDIYFENV-G-------G-KMLDAVLVNMNMHGRIAV 253 (345)
T ss_dssp TCEEEEEESS-C-------H-HHHHHHHTTEEEEEEEEE
T ss_pred CCCcEEEECC-C-------H-HHHHHHHHHHhcCCEEEE
Confidence 4689988632 1 1 356777788999998774
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=80.88 E-value=4 Score=40.23 Aligned_cols=77 Identities=8% Similarity=0.046 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCC--CchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC------
Q psy17734 341 TVVTTIMVVGAG--RGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA------ 411 (626)
Q Consensus 341 ~~~~~VLDvG~G--tG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~------ 411 (626)
.+++++|+-|++ +| ++...+++..+.|+ +|+.++.++... .+.+.+...+ +.+ +.++.+|+.+.+.
T Consensus 4 l~gK~alVTGaa~~~G-IG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~~~~-~~~-~~~~~~Dv~~~~~v~~~~~ 78 (256)
T 4fs3_A 4 LENKTYVIMGIANKRS-IAFGVAKVLDQLGA--KLVFTYRKERSRKELEKLLEQLN-QPE-AHLYQIDVQSDEEVINGFE 78 (256)
T ss_dssp CTTCEEEEECCCSTTC-HHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHGGGT-CSS-CEEEECCTTCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCch-HHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC-CCc-EEEEEccCCCHHHHHHHHH
Confidence 367899999974 35 45545555555674 899999987544 3333332222 234 8999999887531
Q ss_pred -----CCCccEEEecc
Q psy17734 412 -----PEKADIMVSEL 422 (626)
Q Consensus 412 -----p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 79 ~~~~~~G~iD~lvnnA 94 (256)
T 4fs3_A 79 QIGKDVGNIDGVYHSI 94 (256)
T ss_dssp HHHHHHCCCSEEEECC
T ss_pred HHHHHhCCCCEEEecc
Confidence 16899999753
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=80.53 E-value=4.5 Score=41.57 Aligned_cols=92 Identities=20% Similarity=0.141 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-------CCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-------NAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-------~~p~k 414 (626)
++.+||+.|++ |.++..+++.++..|+ +|++++.++......+. .+- . . ++..+-.++ .....
T Consensus 166 ~g~~vlV~Gas-g~iG~~~~~~a~~~G~--~Vi~~~~~~~~~~~~~~---~ga--~-~-~~d~~~~~~~~~~~~~~~~~~ 235 (343)
T 2eih_A 166 PGDDVLVMAAG-SGVSVAAIQIAKLFGA--RVIATAGSEDKLRRAKA---LGA--D-E-TVNYTHPDWPKEVRRLTGGKG 235 (343)
T ss_dssp TTCEEEECSTT-STTHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH---HTC--S-E-EEETTSTTHHHHHHHHTTTTC
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHh---cCC--C-E-EEcCCcccHHHHHHHHhCCCC
Confidence 56899999983 3455555677776774 89999998755422222 232 1 2 222111111 11247
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+|++|.. .+ .+ .+..+.+.|+++|.++--
T Consensus 236 ~d~vi~~----~g-~~----~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 236 ADKVVDH----TG-AL----YFEGVIKATANGGRIAIA 264 (343)
T ss_dssp EEEEEES----SC-SS----SHHHHHHHEEEEEEEEES
T ss_pred ceEEEEC----CC-HH----HHHHHHHhhccCCEEEEE
Confidence 9999862 22 22 355566789999987743
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=80.41 E-value=7 Score=40.35 Aligned_cols=92 Identities=9% Similarity=0.051 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-------CCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-------NAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-------~~p~k 414 (626)
++.+||+.|+ +|.++.++++.++..|+ +|++++.++......+. .+- . . ++..+-.++ .....
T Consensus 162 ~g~~vlV~Ga-~ggiG~~~~~~a~~~Ga--~Vi~~~~~~~~~~~~~~---~g~--~-~-~~~~~~~~~~~~~~~~~~~~~ 231 (354)
T 2j8z_A 162 AGDYVLIHAG-LSGVGTAAIQLTRMAGA--IPLVTAGSQKKLQMAEK---LGA--A-A-GFNYKKEDFSEATLKFTKGAG 231 (354)
T ss_dssp TTCEEEESST-TSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHH---HTC--S-E-EEETTTSCHHHHHHHHTTTSC
T ss_pred CCCEEEEECC-ccHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHH---cCC--c-E-EEecCChHHHHHHHHHhcCCC
Confidence 5688999986 35677777777777774 89999999754422222 222 1 2 222111111 11246
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+|++|-.. |. + .+....+.|+++|.++--
T Consensus 232 ~d~vi~~~-G~-------~-~~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 232 VNLILDCI-GG-------S-YWEKNVNCLALDGRWVLY 260 (354)
T ss_dssp EEEEEESS-CG-------G-GHHHHHHHEEEEEEEEEC
T ss_pred ceEEEECC-Cc-------h-HHHHHHHhccCCCEEEEE
Confidence 99988532 21 2 355566789999987743
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=80.09 E-value=9.9 Score=39.50 Aligned_cols=93 Identities=8% Similarity=0.023 Sum_probs=54.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC------CCCC
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN------APEK 414 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~------~p~k 414 (626)
.++.+||..|++ |.++.++++.++..|+ +|+++- ++.-.. ..+..|- -.++..+-.++. .+++
T Consensus 163 ~~g~~VlV~Ga~-G~vG~~a~qla~~~Ga--~Vi~~~-~~~~~~---~~~~lGa----~~vi~~~~~~~~~~v~~~t~g~ 231 (371)
T 3gqv_A 163 SKPVYVLVYGGS-TATATVTMQMLRLSGY--IPIATC-SPHNFD---LAKSRGA----EEVFDYRAPNLAQTIRTYTKNN 231 (371)
T ss_dssp SSCCEEEEESTT-SHHHHHHHHHHHHTTC--EEEEEE-CGGGHH---HHHHTTC----SEEEETTSTTHHHHHHHHTTTC
T ss_pred CCCcEEEEECCC-cHHHHHHHHHHHHCCC--EEEEEe-CHHHHH---HHHHcCC----cEEEECCCchHHHHHHHHccCC
Confidence 367899999974 5666667788887785 888885 653221 1222332 223332222221 1246
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhc-ccCcEEEec
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYL-KEDGISIPY 452 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~L-kpgGi~IP~ 452 (626)
+|+++- ..| .+..++.+.+.| +++|.++--
T Consensus 232 ~d~v~d-~~g-------~~~~~~~~~~~l~~~~G~iv~~ 262 (371)
T 3gqv_A 232 LRYALD-CIT-------NVESTTFCFAAIGRAGGHYVSL 262 (371)
T ss_dssp CCEEEE-SSC-------SHHHHHHHHHHSCTTCEEEEES
T ss_pred ccEEEE-CCC-------chHHHHHHHHHhhcCCCEEEEE
Confidence 999874 222 345677777788 699987743
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 626 | ||||
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 2e-27 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 2e-26 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 1e-25 |
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 111 bits (277), Expect = 2e-27
Identities = 54/287 (18%), Positives = 98/287 (34%), Gaps = 27/287 (9%)
Query: 314 KDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRV 373
KD I+ Y++ + Q ++ VG G G L S+ AAK +KV
Sbjct: 15 KDKIRTESYRDFIYQNP--------HIFKDKVVLDVGCGTGIL---SMFAAKAGAKKV-- 61
Query: 374 YAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSP 433
V+++ + + + + I + EK D+++SE +G F E
Sbjct: 62 LGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESML 121
Query: 434 EC-LYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIKEHQHPL-----YRFEQ 487
+ LYA KYL + G P T + + + + + +
Sbjct: 122 DSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIPE 181
Query: 488 PYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGYFDTF-- 545
V K I+ P + D + T + S+ IAGYFD +
Sbjct: 182 AVVEVLDPKTLISEPCGIKHIDCHTTSIS-DLEFSSDFTLKITRTSMCTAIAGYFDIYFE 240
Query: 546 --LYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFW 590
+ + S P + W +F + +P +K + ++
Sbjct: 241 KNCHNRVVFSTGPQSTKT---HWKQTVFLLEKPFSVKAGEALKGKVT 284
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 108 bits (270), Expect = 2e-26
Identities = 50/319 (15%), Positives = 103/319 (32%), Gaps = 33/319 (10%)
Query: 309 YEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEAN 368
+E +D ++ + Y+ A+ Q ++ VG G G L S+ AAK
Sbjct: 13 HEEMLQDTVRTLSYRNAIIQNK--------DLFKDKIVLDVGCGTGIL---SMFAAKHGA 61
Query: 369 RKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGD 428
+ V V+ + + + + ++ + + K DI++SE +G F
Sbjct: 62 KHV--IGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLL 119
Query: 429 NELSPE-CLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSM-----IKEHQHPL 482
E + LYA YL E G+ P + ++A + + + +
Sbjct: 120 YESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVP 179
Query: 483 YRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGYF 542
+P V F + D + + A++ +++GI +F
Sbjct: 180 LVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKIS-DLAFKSNFKLTAKRQDMINGIVTWF 238
Query: 543 DTFL-----YKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCD--- 594
D + + S P W +F + + +T D IE +
Sbjct: 239 DIVFPAPKGKRPVEFSTGPHA---PYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKN 295
Query: 595 --NVKVWYEWLVTKPTPSP 611
++ + +
Sbjct: 296 NRDLNIKISYKFESNGIDG 314
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 105 bits (263), Expect = 1e-25
Identities = 47/291 (16%), Positives = 96/291 (32%), Gaps = 26/291 (8%)
Query: 309 YEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEAN 368
+E KD ++ + Y+ ++ ++ VG+G G L + AAK
Sbjct: 8 HEEMLKDEVRTLTYRNSMFHNRHLFKD--------KVVLDVGSGTGIL---CMFAAKAGA 56
Query: 369 RKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMR-TWNAPEKADIMVSELLGSFG 427
RKV +E + + +K K + I + + I+ +
Sbjct: 57 RKV--IGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLF 114
Query: 428 DNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVK---SSMIKEHQHPLYR 484
+ L+A K+L DG+ P T Y+ I + ++ +
Sbjct: 115 YESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKD 174
Query: 485 --FEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGYF 542
++P V K + K D + + +++ +H + YF
Sbjct: 175 VAIKEPLVDVVDPKQLVTNACLIKEV-DIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYF 233
Query: 543 DTFL---YKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFW 590
+ +K S P++ W +F + + + +KT +EI
Sbjct: 234 NIEFTRCHKRTGFSTSPESPYT---HWKQTVFYMEDYLTVKTGEEIFGTIG 281
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 626 | |||
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 100.0 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 100.0 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 100.0 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.47 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.42 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.39 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.38 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.35 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.34 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.34 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.33 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.31 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.31 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.3 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.3 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.29 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.25 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.25 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.22 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.22 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.19 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.18 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.16 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.14 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.14 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.12 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.09 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.08 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.05 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.02 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.0 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 98.99 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.99 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 98.98 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.98 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.95 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 98.94 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.93 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.91 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.9 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.9 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.9 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 98.85 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.83 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 98.83 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.83 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.83 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.81 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 98.8 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.79 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.79 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.78 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.78 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.77 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.77 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.74 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.74 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.74 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.69 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.62 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.57 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.54 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.53 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.52 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.52 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.51 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.47 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.47 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.45 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.42 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.42 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.39 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.35 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.3 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.29 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.27 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.15 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.07 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.01 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.0 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.97 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 97.96 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 97.91 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.9 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.83 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.75 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.74 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.73 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.68 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.66 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.61 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.24 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.2 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.13 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.85 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.82 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.72 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.7 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.45 | |
| d1qtwa_ | 285 | Endonuclease IV {Escherichia coli [TaxId: 562]} | 96.31 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.15 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.99 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 95.98 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.98 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.56 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.56 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.43 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.41 | |
| d1xp3a1 | 297 | Endonuclease IV {Bacillus anthracis [TaxId: 1392]} | 95.13 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.12 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.94 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 94.54 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.53 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.19 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.1 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 93.34 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.14 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 92.99 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 92.56 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.26 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.25 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 91.8 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 91.76 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 91.34 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 91.19 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 91.12 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 90.88 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 90.86 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 90.81 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 90.05 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 89.81 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 89.0 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 88.84 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 88.82 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 88.71 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 88.38 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 88.25 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 87.69 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 87.6 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 87.57 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 87.55 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 87.53 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 87.01 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 86.92 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 86.74 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 86.2 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 86.1 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 86.05 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 85.42 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 84.99 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 84.97 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 84.46 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 84.07 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 83.75 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 83.73 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 83.54 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 83.38 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 83.35 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 83.26 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 83.11 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 82.84 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 82.78 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 82.54 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 82.44 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 82.14 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 81.56 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 81.15 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 81.12 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 80.95 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 80.83 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 80.26 |
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.8e-46 Score=389.72 Aligned_cols=281 Identities=17% Similarity=0.235 Sum_probs=243.3
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHH
Q psy17734 308 TYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLK 387 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~ 387 (626)
.+..|++|..|+..|++||.++... .++++|||||||+|.|+++++++ |+ .+|+|+|.++++..+++
T Consensus 12 ~h~~ml~D~~r~~~y~~aI~~~~~~--------~~~~~VLDlGcGtG~ls~~aa~~----Ga-~~V~avd~s~~~~~a~~ 78 (328)
T d1g6q1_ 12 IHEEMLQDTVRTLSYRNAIIQNKDL--------FKDKIVLDVGCGTGILSMFAAKH----GA-KHVIGVDMSSIIEMAKE 78 (328)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHH--------HTTCEEEEETCTTSHHHHHHHHT----CC-SEEEEEESSTHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcccc--------CCcCEEEEeCCCCCHHHHHHHHh----CC-CEEEEEeCCHHHHHHHH
Confidence 4678999999999999999887654 26789999999999999755443 33 49999999998888888
Q ss_pred HHHHcCCCCCcEEEEEecccccCCC-CCccEEEeccccccCCCCCc-HHHHHHHHHhcccCcEEEeccceeeEEeccChH
Q psy17734 388 YKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELLGSFGDNELS-PECLYAAQKYLKEDGISIPYNYTSYIAPIMSHK 465 (626)
Q Consensus 388 ~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSEllgsfg~~El~-pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~ 465 (626)
..+.+++.++ |+++++|++++..+ +++|+|+||++++++.+|.. +.+++++.|+|||||++||+++++|++||++++
T Consensus 79 ~~~~~~~~~~-i~~i~~~~~~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~~~~~~~v~~~~ 157 (328)
T d1g6q1_ 79 LVELNGFSDK-ITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQ 157 (328)
T ss_dssp HHHHTTCTTT-EEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHH
T ss_pred HHHHhCcccc-ceEEEeehhhccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeeecceeeecccCHH
Confidence 8889999887 99999999999876 78999999999999999886 678899999999999999999999999999999
Q ss_pred hHHHHhhhccc---cCCCc--ccCCCCcEEEEecCccccCCCeeEEEeeCCCCCCCCCCceeeEEEEEEeeCceEEEEEE
Q psy17734 466 LFTQVKSSMIK---EHQHP--LYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAG 540 (626)
Q Consensus 466 l~~~~~~~~~~---fd~~~--~~~~e~P~vv~l~~~~~Ls~p~~~~tFd~p~~~~~~~~~r~~~~~f~i~~~g~~hGf~~ 540 (626)
+|++....|+. ||+++ ...+++|++..+.+.++++.|.++++|++.+.. ..++.+...++|+++++|+||||++
T Consensus 158 l~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~g~~hg~~~ 236 (328)
T d1g6q1_ 158 YKDEKLNYWQDVYGFDYSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVK-ISDLAFKSNFKLTAKRQDMINGIVT 236 (328)
T ss_dssp HHHHHHHHTTCBTTBCCTTHHHHHTTSCEEECCCGGGBCBCCEEEEEEETTTCC-GGGGSEEEEEEEEBCSSCEEEEEEE
T ss_pred HHHHhccccccccccccchhhhhhccCcEEEEecCceeecCceeEEEecccccc-hhhcceeeeEEEEecCCcEEEEEEE
Confidence 99987776654 56654 235678999999999999999999999998763 4566788899999999999999999
Q ss_pred EEEEEecC-----ceEEecCCCCCCCCCccceeEEEecCCceeeCCCCEEEEEEEEEecCc-----eEEEEEEEec
Q psy17734 541 YFDTFLYK-----DINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNV-----KVWYEWLVTK 606 (626)
Q Consensus 541 wFd~~L~~-----~v~lSt~P~t~s~~m~sW~q~~fpL~~Pi~V~~Gd~i~v~~~R~~d~~-----~VWyEW~~~~ 606 (626)
||+++|++ ++.|||+|.. ..+||+|++|||++|+.|++||+|++++++..+.. .|||||.++.
T Consensus 237 wFd~~l~~~~~~~~i~lST~P~~---~~thW~Q~v~~l~~pi~v~~gd~i~~~~~~~~~~~~~r~~~v~~~~~~~~ 309 (328)
T d1g6q1_ 237 WFDIVFPAPKGKRPVEFSTGPHA---PYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISYKFES 309 (328)
T ss_dssp EEEEECCCCTTSCCCEEECSTTS---CCCTTCEEEEEEEEEEECCTTCEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred EEEEEccCCCCCCceEEeCCCCC---CCCceeeEEEEeCCceEeCCCCEEEEEEEEEECCCCCeeEEEEEEEEEEe
Confidence 99999985 4899999953 25689999999999999999999998887666543 4899999864
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=3.6e-46 Score=390.05 Aligned_cols=281 Identities=19% Similarity=0.183 Sum_probs=240.9
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHH
Q psy17734 308 TYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLK 387 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~ 387 (626)
.++.|++|.+|++.|++||.++... .++++|||||||+|.++++|+++ |+ .+|+|||.++.+..+++
T Consensus 7 ~h~~Ml~D~~R~~~y~~ai~~~~~~--------~~~~~VLDiGcG~G~ls~~aa~~----Ga-~~V~avd~s~~~~~a~~ 73 (316)
T d1oria_ 7 IHEEMLKDEVRTLTYRNSMFHNRHL--------FKDKVVLDVGSGTGILCMFAAKA----GA-RKVIGIECSSISDYAVK 73 (316)
T ss_dssp HHHHHHHCHHHHHHHHHHHHTCHHH--------HTTCEEEEETCTTSHHHHHHHHT----TC-SEEEEEECSTTHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcccc--------CCcCEEEEEecCCcHHHHHHHHh----CC-CEEEEEcCcHHHhhhhh
Confidence 4788999999999999999876543 25789999999999999755444 33 49999999998888888
Q ss_pred HHHHcCCCCCcEEEEEecccccCCC-CCccEEEeccccccCCCCCc-HHHHHHHHHhcccCcEEEeccceeeEEeccChH
Q psy17734 388 YKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELLGSFGDNELS-PECLYAAQKYLKEDGISIPYNYTSYIAPIMSHK 465 (626)
Q Consensus 388 ~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSEllgsfg~~El~-pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~ 465 (626)
.++.|++.++ |+++++|+++++.+ +++|+|+||++++++.+|.. +++++++.|+|||||.+||+++++|++||+++.
T Consensus 74 ~~~~n~~~~~-v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~~~~~~~~v~~~~ 152 (316)
T d1oria_ 74 IVKANKLDHV-VTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQ 152 (316)
T ss_dssp HHHHTTCTTT-EEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHH
T ss_pred HHHHhCCccc-cceEeccHHHcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeeeEEEEEEEecCHH
Confidence 8899999998 99999999999876 79999999999999999875 789999999999999999999999999999999
Q ss_pred hHHHHhhhccc---cCCCc--ccCCCCcEEEEecCccccCCCeeEEEeeCCCCCCCCCCceeeEEEEEEeeCceEEEEEE
Q psy17734 466 LFTQVKSSMIK---EHQHP--LYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAG 540 (626)
Q Consensus 466 l~~~~~~~~~~---fd~~~--~~~~e~P~vv~l~~~~~Ls~p~~~~tFd~p~~~~~~~~~r~~~~~f~i~~~g~~hGf~~ 540 (626)
+|+....+|+. ||++. ....++|++....+..++++|+.+++||+.+.. ..++.+...++|++.++|+||||++
T Consensus 153 ~~~~~~~~~~~~~g~d~~~~~~~~~~~~~v~~~~~~~~ls~p~~~~~~d~~~~~-~~~l~~~~~~~~~~~~~g~~hg~~~ 231 (316)
T d1oria_ 153 YKDYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVK-VEDLTFTSPFCLQVKRNDYVHALVA 231 (316)
T ss_dssp HHHHHTTTTTCBTTBCCHHHHHHHHTSCEEECCCGGGEEEEEEEEEEEETTTCC-GGGGSEEEEEEEEBCSSEEEEEEEE
T ss_pred HHhhhcccccccccccchhhhhhhccccEEEEecCceEeeCCEEeEEEcCCCCc-ccCccEEEEEEEeecCCceEEEEEE
Confidence 99987777654 45543 234567999888899999999999999998763 3466788899999999999999999
Q ss_pred EEEEEec---CceEEecCCCCCCCCCccceeEEEecCCceeeCCCCEEEEEEEEEecCce-----EEEEEEEec
Q psy17734 541 YFDTFLY---KDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNVK-----VWYEWLVTK 606 (626)
Q Consensus 541 wFd~~L~---~~v~lSt~P~t~s~~m~sW~q~~fpL~~Pi~V~~Gd~i~v~~~R~~d~~~-----VWyEW~~~~ 606 (626)
||+++|+ +++.|||+|... .+||+|++|||++|+.|++||+|++++.++.+... ++++|.+.+
T Consensus 232 wFd~~l~~~~~~v~lST~P~~~---~thW~Q~v~~l~~p~~v~~g~~i~~~i~~~~~~~~~r~~~~~~~~~~~~ 302 (316)
T d1oria_ 232 YFNIEFTRCHKRTGFSTSPESP---YTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKG 302 (316)
T ss_dssp EEEEECTTSSSCCEEECSTTSC---CCTTCEEEEEEEEEEEECTTCEEEEEEEEEECSSSTTCEEEEEEEEEEC
T ss_pred EEEEEeeCCCCCeEEECCCCcC---CCceecEEEEcCCceEcCCCCEEEEEEEEEECCCCCceEEEEEEEEecC
Confidence 9999997 568999999542 45899999999999999999999988887765432 666776655
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.9e-46 Score=385.79 Aligned_cols=270 Identities=19% Similarity=0.230 Sum_probs=233.1
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHH
Q psy17734 308 TYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLK 387 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~ 387 (626)
.++.|++|..|++.|++||.++... .++++|||||||+|.|++++++++ + .+|+|+|.|+.+..+++
T Consensus 9 ~h~~ml~D~~r~~~y~~ai~~~~~~--------~~~~~VLDiGcG~G~lsl~aa~~G----a-~~V~aid~s~~~~~a~~ 75 (311)
T d2fyta1 9 IHEEMLKDKIRTESYRDFIYQNPHI--------FKDKVVLDVGCGTGILSMFAAKAG----A-KKVLGVDQSEILYQAMD 75 (311)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHCGGG--------TTTCEEEEETCTTSHHHHHHHHTT----C-SEEEEEESSTHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcccc--------CCcCEEEEECCCCCHHHHHHHHcC----C-CEEEEEeCHHHHHHHHH
Confidence 5789999999999999999887654 367899999999999997655544 3 49999999999888888
Q ss_pred HHHHcCCCCCcEEEEEecccccCCC-CCccEEEeccccccCCCCCc-HHHHHHHHHhcccCcEEEeccceeeEEeccChH
Q psy17734 388 YKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELLGSFGDNELS-PECLYAAQKYLKEDGISIPYNYTSYIAPIMSHK 465 (626)
Q Consensus 388 ~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSEllgsfg~~El~-pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~ 465 (626)
.++++++.++ |+++++|++++..+ +++|+||||++++++.+|.. ++++++++++|||||++||+++++|++|+++..
T Consensus 76 ~~~~~~~~~~-i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~~~~~~~~~v~~~~ 154 (311)
T d2fyta1 76 IIRLNKLEDT-ITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVN 154 (311)
T ss_dssp HHHHTTCTTT-EEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHH
T ss_pred HHHHhCCCcc-ceEEEeeHHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEeccccceEEEEecCHH
Confidence 8888999887 99999999999875 79999999999999999986 677888899999999999999999999999999
Q ss_pred hHHHHhhhccc---cCCCccc--CCCCcEEEEecCccccCCCeeEEEeeCCCCCCCCCCceeeEEEEEEeeCceEEEEEE
Q psy17734 466 LFTQVKSSMIK---EHQHPLY--RFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAG 540 (626)
Q Consensus 466 l~~~~~~~~~~---fd~~~~~--~~e~P~vv~l~~~~~Ls~p~~~~tFd~p~~~~~~~~~r~~~~~f~i~~~g~~hGf~~ 540 (626)
+|.+...+|+. ||++... ...+|++..+.+..+|++|+.+++|++.+.. ..+..+...++|+++++|++|||++
T Consensus 155 ~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~~~~~~ls~p~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~ 233 (311)
T d2fyta1 155 KHADRIAFWDDVYGFKMSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTS-ISDLEFSSDFTLKITRTSMCTAIAG 233 (311)
T ss_dssp HHHHHTGGGGCBTTBCCGGGHHHHTTBCEEECCCGGGBCBCCEEEEEEETTTCC-GGGGSEEEEEEEEBCSCEEEEEEEE
T ss_pred HHHhhhccccccccccccchhhccccccEEEecChhheecCCEeEEEeccCcCc-cccccEEEEEEeeecCCcceEEEEE
Confidence 99887766654 4654432 4577899999999999999999999998763 3456778899999999999999999
Q ss_pred EEEEEec----CceEEecCCCCCCCCCccceeEEEecCCceeeCCCCEEEEEEEEEecC
Q psy17734 541 YFDTFLY----KDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDN 595 (626)
Q Consensus 541 wFd~~L~----~~v~lSt~P~t~s~~m~sW~q~~fpL~~Pi~V~~Gd~i~v~~~R~~d~ 595 (626)
||+++|+ +++.|||+|... .+||+|++|||++|+.|++||+|+++++++.+.
T Consensus 234 Wfd~~f~~~~~~~~~lST~P~~~---~thW~q~~~~l~~p~~v~~gd~l~~~~~~~~~~ 289 (311)
T d2fyta1 234 YFDIYFEKNCHNRVVFSTGPQST---KTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNK 289 (311)
T ss_dssp EEEEEECTTCSSCEEEECSTTSC---CCTTCEEEEEEEEEEEECTTCEEEEEEEEEECS
T ss_pred EEEEEEECCCCCceEEeCCCCcC---CCccccEEEEeCCceEeCCCCEEEEEEEEEECC
Confidence 9999864 679999999632 357999999999999999999999988766543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.47 E-value=4.1e-14 Score=139.67 Aligned_cols=101 Identities=17% Similarity=0.197 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++++|||+|||+|.++..+ ++ .| .+|+|||.|+.++ .|++....++. +|+++++|+++++.+++||+|+|
T Consensus 37 ~~~~vLDiGCG~G~~~~~l---~~-~g--~~v~GvD~S~~ml~~A~~~~~~~~~---~v~~~~~d~~~~~~~~~fD~i~~ 107 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENL---CP-KF--KNTWAVDLSQEMLSEAENKFRSQGL---KPRLACQDISNLNINRKFDLITC 107 (246)
T ss_dssp CTTEEEEETCTTSTTHHHH---GG-GS--SEEEEECSCHHHHHHHHHHHHHTTC---CCEEECCCGGGCCCSCCEEEEEE
T ss_pred CCCeEEEEeCcCCHHHHHH---HH-hC--CccEeeccchhhhhhccccccccCc---cceeeccchhhhcccccccccce
Confidence 4578999999999998643 33 34 4999999999887 66666666665 49999999999998899999998
Q ss_pred --ccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 421 --ELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 --Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
..++++...+....+|..+.+.|||||++|-
T Consensus 108 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 108 CLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp CTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred eeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 3344333333345688999999999999884
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.42 E-value=3.1e-13 Score=132.98 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=78.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
+.++|||+|||+|.++..+++ .| .+|+|||.|+.++ .|+++...++. +|+++++|+++++.+++||+|++
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~----~~--~~v~gvD~s~~mi~~a~~~~~~~~~---~i~~~~~d~~~l~~~~~fD~I~~ 111 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAE----RG--YEVVGLDLHEEMLRVARRKAKERNL---KIEFLQGDVLEIAFKNEFDAVTM 111 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHH----TT--CEEEEEESCHHHHHHHHHHHHHTTC---CCEEEESCGGGCCCCSCEEEEEE
T ss_pred CCCEEEEeCCCCCccchhhcc----cc--eEEEEEeeccccccccccccccccc---cchheehhhhhcccccccchHhh
Confidence 557899999999999865443 23 4899999999877 66766666655 49999999999999899999998
Q ss_pred cc-ccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 421 EL-LGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 421 El-lgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
.. ...+...+....+|..+.+.|||||++|.+-
T Consensus 112 ~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp CSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 43 2222222223468899999999999998753
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.39 E-value=6.8e-13 Score=127.69 Aligned_cols=101 Identities=14% Similarity=0.099 Sum_probs=74.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||||||+|.++..+ ++ .+ .+|+|+|.|+.++ .+++.....+. ++.++.+|++++..+ ++||+|+
T Consensus 37 ~~~~ILDiGcG~G~~~~~l---a~-~~--~~v~giD~S~~~i~~ak~~~~~~~~---~~~~~~~d~~~l~~~~~~fD~I~ 107 (226)
T d1ve3a1 37 KRGKVLDLACGVGGFSFLL---ED-YG--FEVVGVDISEDMIRKAREYAKSRES---NVEFIVGDARKLSFEDKTFDYVI 107 (226)
T ss_dssp SCCEEEEETCTTSHHHHHH---HH-TT--CEEEEEESCHHHHHHHHHHHHHTTC---CCEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCEEEEECCCcchhhhhH---hh-hh--cccccccccccchhhhhhhhccccc---cccccccccccccccCcCceEEE
Confidence 4568999999999998643 33 34 4999999999887 66555544443 388999999998765 7899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|..+-.+...+....+|..+.++|||||.++-
T Consensus 108 ~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii 139 (226)
T d1ve3a1 108 FIDSIVHFEPLELNQVFKEVRRVLKPSGKFIM 139 (226)
T ss_dssp EESCGGGCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EecchhhCChhHHHHHHHHHHHHcCcCcEEEE
Confidence 85432222222245689999999999998764
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=1e-12 Score=129.63 Aligned_cols=106 Identities=16% Similarity=0.125 Sum_probs=84.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMV 419 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIV 419 (626)
.++.+|||||||+|.++.. ++++.+ .+|+|||.|+.++ .+++.....+++++ |+++.+|++++..+++||+|+
T Consensus 32 ~pg~~VLDiGCG~G~~~~~---la~~~~--~~v~GvD~s~~~~~~ar~~~~~~gl~~~-v~~~~~d~~~~~~~~~fD~v~ 105 (245)
T d1nkva_ 32 KPGTRILDLGSGSGEMLCT---WARDHG--ITGTGIDMSSLFTAQAKRRAEELGVSER-VHFIHNDAAGYVANEKCDVAA 105 (245)
T ss_dssp CTTCEEEEETCTTCHHHHH---HHHHTC--CEEEEEESCHHHHHHHHHHHHHTTCTTT-EEEEESCCTTCCCSSCEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHH---HHHhcC--CEEEEEecccchhhHHHHHHHHhhcccc-chhhhhHHhhccccCceeEEE
Confidence 3678999999999988754 334445 4999999999876 77777788899887 999999999987678999999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
|...-... ...+..+..+.+.|||||.++....
T Consensus 106 ~~~~~~~~--~d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 106 CVGATWIA--GGFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp EESCGGGT--SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred EEehhhcc--CCHHHHHHHHHHHcCcCcEEEEEec
Confidence 84432222 2246789999999999999987643
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.35 E-value=1.2e-12 Score=128.07 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=79.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIM 418 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiI 418 (626)
.++.+|||||||+|.++.. .+++ + .+|+|||.|+.++ .|++....+++. |++++++|+++++.+ ++||+|
T Consensus 15 ~~~~rILDiGcGtG~~~~~---la~~-~--~~v~gvD~S~~~l~~A~~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v 86 (234)
T d1xxla_ 15 RAEHRVLDIGAGAGHTALA---FSPY-V--QECIGVDATKEMVEVASSFAQEKGVE--NVRFQQGTAESLPFPDDSFDII 86 (234)
T ss_dssp CTTCEEEEESCTTSHHHHH---HGGG-S--SEEEEEESCHHHHHHHHHHHHHHTCC--SEEEEECBTTBCCSCTTCEEEE
T ss_pred CCCCEEEEeCCcCcHHHHH---HHHh-C--CeEEEEeCChhhhhhhhhhhcccccc--ccccccccccccccccccccee
Confidence 3678999999999999864 3333 3 3999999999877 777777778775 599999999999865 789999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+|-..-.. -....+++..+.++|||||.++-
T Consensus 87 ~~~~~l~~--~~d~~~~l~~~~r~LkpgG~~~~ 117 (234)
T d1xxla_ 87 TCRYAAHH--FSDVRKAVREVARVLKQDGRFLL 117 (234)
T ss_dssp EEESCGGG--CSCHHHHHHHHHHHEEEEEEEEE
T ss_pred eeeceeec--ccCHHHHHHHHHHeeCCCcEEEE
Confidence 98432111 12356799999999999998765
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.34 E-value=1.9e-12 Score=126.02 Aligned_cols=107 Identities=15% Similarity=0.184 Sum_probs=82.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||||||||.++..+++.....+ .+|+|||.|+.++ .|++..+..+.... ++++.+|+.+++. +++|++++
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~--~~v~giD~S~~ml~~A~~~~~~~~~~~~-~~~~~~d~~~~~~-~~~d~i~~ 114 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPN--VKIIGIDNSQPMVERCRQHIAAYHSEIP-VEILCNDIRHVEI-KNASMVIL 114 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSS--CEEEEECSCHHHHHHHHHHHHTSCCSSC-EEEECSCTTTCCC-CSEEEEEE
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCC--CceEEeCCCHHHHHHHHHHhHhhcccch-hhhccchhhcccc-ccceeeEE
Confidence 567999999999999865554332223 5999999999877 77777666665555 9999999988865 67899888
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
-...++...+....+|+.+.+.|||||.+|-.
T Consensus 115 ~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~ 146 (225)
T d1im8a_ 115 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLS 146 (225)
T ss_dssp ESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred eeeccccChhhHHHHHHHHHHhCCCCceeecc
Confidence 65555554455568999999999999998854
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.34 E-value=4e-12 Score=128.75 Aligned_cols=106 Identities=17% Similarity=0.172 Sum_probs=83.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEE
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIM 418 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiI 418 (626)
..++.+|||||||+|.++. .++++.| .+|+||+.|+.+. .+++..++.++.++ +.+...|.++++ ++||.|
T Consensus 50 l~~g~~VLDiGCG~G~~a~---~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~l~~~-~~~~~~d~~~~~--~~fD~i 121 (280)
T d2fk8a1 50 LKPGMTLLDIGCGWGTTMR---RAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRS-RQVLLQGWEDFA--EPVDRI 121 (280)
T ss_dssp CCTTCEEEEESCTTSHHHH---HHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSC-EEEEESCGGGCC--CCCSEE
T ss_pred CCCCCEEEEecCCchHHHH---HHHHhCc--eeEEEecchHHHHHHHHHHHHhhccccc-hhhhhhhhhhhc--cchhhh
Confidence 3478899999999999874 4555556 4999999999876 77777778888877 999999988764 789999
Q ss_pred Ee-ccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 419 VS-ELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 419 VS-Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+| |.+.+++. +..+.++..+.++|||||.++-+..
T Consensus 122 ~si~~~eh~~~-~~~~~~f~~i~~~LkpgG~~~i~~i 157 (280)
T d2fk8a1 122 VSIEAFEHFGH-ENYDDFFKRCFNIMPADGRMTVQSS 157 (280)
T ss_dssp EEESCGGGTCG-GGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hHhhHHHHhhh-hhHHHHHHHHHhccCCCceEEEEEe
Confidence 98 44444432 3347899999999999999987653
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.33 E-value=1.7e-12 Score=123.16 Aligned_cols=99 Identities=23% Similarity=0.190 Sum_probs=80.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIM 418 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiI 418 (626)
.++.+|||+|||+|.+++.+ ++. + .+|+|||.++.++ .++++.+++++.++ |+++++|+.+...+ +.+|+|
T Consensus 32 ~~g~~VLDiGcGsG~~s~~l---A~~-~--~~V~avD~~~~~l~~a~~n~~~~gl~~~-v~~~~gda~~~~~~~~~~D~v 104 (186)
T d1l3ia_ 32 GKNDVAVDVGCGTGGVTLEL---AGR-V--RRVYAIDRNPEAISTTEMNLQRHGLGDN-VTLMEGDAPEALCKIPDIDIA 104 (186)
T ss_dssp CTTCEEEEESCTTSHHHHHH---HTT-S--SEEEEEESCHHHHHHHHHHHHHTTCCTT-EEEEESCHHHHHTTSCCEEEE
T ss_pred CCCCEEEEEECCeEcccccc---ccc-c--eEEEEecCCHHHHHHHHHHHHHcCCCcc-eEEEECchhhcccccCCcCEE
Confidence 47789999999999998643 332 2 3999999999887 88888889999887 99999999886544 789999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
++... ....+++++.+.+.|||||.++.
T Consensus 105 ~~~~~-----~~~~~~~~~~~~~~LkpgG~lvi 132 (186)
T d1l3ia_ 105 VVGGS-----GGELQEILRIIKDKLKPGGRIIV 132 (186)
T ss_dssp EESCC-----TTCHHHHHHHHHHTEEEEEEEEE
T ss_pred EEeCc-----cccchHHHHHHHHHhCcCCEEEE
Confidence 98432 23457889999999999999863
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.31 E-value=3.8e-12 Score=128.19 Aligned_cols=103 Identities=13% Similarity=0.083 Sum_probs=81.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIM 418 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiI 418 (626)
.++.+|||||||+|.++..+ +++.+ .+|+|||.++.++ .+.+.....++.++ |+++++|+++++.+ ++||+|
T Consensus 66 ~~~~~vLDiGcG~G~~~~~l---a~~~~--~~v~gvD~s~~~i~~a~~~~~~~gl~~~-v~~~~~d~~~l~~~~~sfD~V 139 (282)
T d2o57a1 66 QRQAKGLDLGAGYGGAARFL---VRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLADN-ITVKYGSFLEIPCEDNSYDFI 139 (282)
T ss_dssp CTTCEEEEETCTTSHHHHHH---HHHHC--CEEEEEESCHHHHHHHHHHHHHHTCTTT-EEEEECCTTSCSSCTTCEEEE
T ss_pred CCCCEEEEeCCCCcHHHhhh---hccCC--cEEEEEeccchhhhhhhccccccccccc-ccccccccccccccccccchh
Confidence 46789999999999998643 33345 4999999999876 77777777888887 99999999999865 789999
Q ss_pred Eecc-ccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 419 VSEL-LGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 419 VSEl-lgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+|-. +.++ +....++..+.+.|||||.++-.
T Consensus 140 ~~~~~l~h~---~d~~~~l~~~~~~LkpgG~l~~~ 171 (282)
T d2o57a1 140 WSQDAFLHS---PDKLKVFQECARVLKPRGVMAIT 171 (282)
T ss_dssp EEESCGGGC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred hccchhhhc---cCHHHHHHHHHHhcCCCcEEEEE
Confidence 9833 3333 23467899999999999998743
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.31 E-value=1.1e-11 Score=126.15 Aligned_cols=108 Identities=18% Similarity=0.165 Sum_probs=85.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEE
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIM 418 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiI 418 (626)
..++.+|||||||.|.++. .++++.| ++|+||+.|+... .+.+..+..++.++ |++...|.+.. +++||.|
T Consensus 59 l~~G~~VLDiGCG~G~~~~---~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~l~~~-v~~~~~d~~~~--~~~fD~i 130 (291)
T d1kpia_ 59 LEPGMTLLDIGCGWGSTMR---HAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRR-KEVRIQGWEEF--DEPVDRI 130 (291)
T ss_dssp CCTTCEEEEETCTTSHHHH---HHHHHHC--CEEEEEESCHHHHHHHHHHHHHSCCSSC-EEEEECCGGGC--CCCCSEE
T ss_pred CCCCCEEEEecCcchHHHH---HHHHhcC--cceeeccchHHHHHHHHHHHHhhccchh-hhhhhhccccc--ccccceE
Confidence 4578999999999999984 4555566 4999999999776 66777777889888 99999998765 3789999
Q ss_pred Ee-ccccccCCC------CCcHHHHHHHHHhcccCcEEEeccce
Q psy17734 419 VS-ELLGSFGDN------ELSPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 419 VS-Ellgsfg~~------El~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
|| |.+.++++. +..+.++..+.++|||||.++-+..+
T Consensus 131 ~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~ 174 (291)
T d1kpia_ 131 VSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 174 (291)
T ss_dssp EEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred eechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence 99 555555543 22468999999999999998866443
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.30 E-value=1.2e-11 Score=125.44 Aligned_cols=156 Identities=20% Similarity=0.267 Sum_probs=106.9
Q ss_pred hhhhhchh---hhhcCCCcchhhcchhhHHHHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHH
Q psy17734 283 SMAAQDFE---DYLQFPLQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTA 359 (626)
Q Consensus 283 ~~~~~~y~---d~lq~PLqpl~dnL~s~tYe~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~ 359 (626)
++.+..|. |+++.-|.|-+.. ++.. |.++..-.+.-+.+....+.+++ ...++.+|||||||.|.++.
T Consensus 8 ~~i~~HYD~~~~fy~~~Lg~~~~Y-S~g~---~~~~~~tL~eAQ~~k~~~~~~~l----~l~~G~~VLDiGCG~G~~a~- 78 (285)
T d1kpga_ 8 ANVQAHYDLSDDFFRLFLDPTQTY-SCAY---FERDDMTLQEAQIAKIDLALGKL----GLQPGMTLLDVGCGWGATMM- 78 (285)
T ss_dssp HHHHHHHTSCHHHHTTTSCTTCCC-SCCC---CSSTTCCHHHHHHHHHHHHHTTT----TCCTTCEEEEETCTTSHHHH-
T ss_pred HHHHHhcCCcHHHHHHhCCCCCcE-eeEE---eCCCCCCHHHHHHHHHHHHHHHc----CCCCCCEEEEecCcchHHHH-
Confidence 45556673 7777777765442 2222 32222112222333333333332 34578999999999999985
Q ss_pred HHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe-ccccccCCCCCcHHHHH
Q psy17734 360 SLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS-ELLGSFGDNELSPECLY 437 (626)
Q Consensus 360 al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS-Ellgsfg~~El~pe~L~ 437 (626)
.++++.| ++|+||..|+... .+.+..++.+..++ |++..+|.++++ ++||.|+| |.+.+++. .....++.
T Consensus 79 --~~a~~~g--~~v~git~s~~Q~~~a~~~~~~~g~~~~-v~~~~~d~~~~~--~~fD~i~si~~~eh~~~-~~~~~~~~ 150 (285)
T d1kpga_ 79 --RAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRS-KRVLLAGWEQFD--EPVDRIVSIGAFEHFGH-ERYDAFFS 150 (285)
T ss_dssp --HHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSC-EEEEESCGGGCC--CCCSEEEEESCGGGTCT-TTHHHHHH
T ss_pred --HHHhcCC--cceEEEeccHHHHHHHHHHHHhhhhhhh-hHHHHhhhhccc--ccccceeeehhhhhcCc-hhHHHHHH
Confidence 4555567 4999999999776 66777778888887 999999999885 68999999 44444443 33467899
Q ss_pred HHHHhcccCcEEEeccce
Q psy17734 438 AAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 438 ~~~r~LkpgGi~IP~~~t 455 (626)
.+.++|||||.++-+..+
T Consensus 151 ~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 151 LAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp HHHHHSCTTCEEEEEEEE
T ss_pred HHHhhcCCCCcEEEEEEe
Confidence 999999999999866543
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.30 E-value=4e-12 Score=123.26 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||||||+|.++.. .+++ + .+|+|||.|+.++ .|++.....++. ||+++++|+++++.+ ++||+|+
T Consensus 15 ~~~rVLDiGcG~G~~~~~---l~~~-~--~~v~gvD~s~~~i~~A~~~~~~~~~~--~i~~~~~d~~~l~~~~~~fD~v~ 86 (231)
T d1vl5a_ 15 GNEEVLDVATGGGHVANA---FAPF-V--KKVVAFDLTEDILKVARAFIEGNGHQ--QVEYVQGDAEQMPFTDERFHIVT 86 (231)
T ss_dssp SCCEEEEETCTTCHHHHH---HGGG-S--SEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEECCC-CCCSCTTCEEEEE
T ss_pred CcCEEEEecccCcHHHHH---HHHh-C--CEEEEEECCHHHHhhhhhcccccccc--ccccccccccccccccccccccc
Confidence 678999999999999854 3333 4 3999999999887 666666677765 699999999999864 7899999
Q ss_pred ecc-ccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SEL-LGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEl-lgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|.. +.++ ......+..+.+.|||||.++-
T Consensus 87 ~~~~l~~~---~d~~~~l~~~~r~LkpgG~l~i 116 (231)
T d1vl5a_ 87 CRIAAHHF---PNPASFVSEAYRVLKKGGQLLL 116 (231)
T ss_dssp EESCGGGC---SCHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccc---CCHHHHHHHHHHhcCCCcEEEE
Confidence 843 3322 2245689999999999998774
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.29 E-value=3.9e-12 Score=121.44 Aligned_cols=102 Identities=18% Similarity=0.182 Sum_probs=79.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++.. +++ .+ .+|+++|.|+.++ .++++.+.++..+.+++++.+|+.+...+++||+|++
T Consensus 52 ~~~~VLDiGcG~G~~~~~---la~-~~--~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~Ii~ 125 (194)
T d1dusa_ 52 KDDDILDLGCGYGVIGIA---LAD-EV--KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIIT 125 (194)
T ss_dssp TTCEEEEETCTTSHHHHH---HGG-GS--SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEE
T ss_pred CCCeEEEEeecCChhHHH---HHh-hc--cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCceEEEE
Confidence 568999999999999853 333 23 3999999999887 7788888888876459999999987555679999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
..+-+.+ .+...++++.+.+.|||||+++
T Consensus 126 ~~p~~~~-~~~~~~~l~~~~~~LkpgG~l~ 154 (194)
T d1dusa_ 126 NPPIRAG-KEVLHRIIEEGKELLKDNGEIW 154 (194)
T ss_dssp CCCSTTC-HHHHHHHHHHHHHHEEEEEEEE
T ss_pred cccEEec-chhhhhHHHHHHHhcCcCcEEE
Confidence 8763322 1223567888999999999875
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.25 E-value=1.2e-11 Score=118.04 Aligned_cols=101 Identities=18% Similarity=0.164 Sum_probs=80.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
+.+|||||||+|.++..+++ .| .+|+|||.++.++ .+++.....++. ++++...|+.++..+++||+|++-
T Consensus 31 ~grvLDiGcG~G~~~~~la~----~g--~~v~gvD~s~~~l~~a~~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~I~~~ 102 (198)
T d2i6ga1 31 PGRTLDLGCGNGRNSLYLAA----NG--YDVTAWDKNPASMANLERIKAAEGLD--NLQTDLVDLNTLTFDGEYDFILST 102 (198)
T ss_dssp SCEEEEETCTTSHHHHHHHH----TT--CEEEEEESCHHHHHHHHHHHHHTTCT--TEEEEECCTTTCCCCCCEEEEEEE
T ss_pred CCcEEEECCCCCHHHHHHHH----Hh--hhhccccCcHHHHHHHHHHhhhcccc--chhhhheecccccccccccEEEEe
Confidence 35899999999999875433 24 4999999999887 566666667775 599999999999988999999985
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
..-.+...+..+.++..+.+.|+|||+++-
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~ 132 (198)
T d2i6ga1 103 VVMMFLEAQTIPGLIANMQRCTKPGGYNLI 132 (198)
T ss_dssp SCGGGSCTTHHHHHHHHHHHTEEEEEEEEE
T ss_pred eeeecCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 544444444457799999999999998764
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.25 E-value=8.4e-12 Score=125.02 Aligned_cols=97 Identities=18% Similarity=0.121 Sum_probs=81.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++.. ++++.+ .+|+|||.||.|+ .++++++.|++.++ |+++++|++++....++|.||+
T Consensus 107 ~g~~VlD~~aG~G~~~l~---~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~~-v~~~~~D~~~~~~~~~~D~Ii~ 180 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLP---IAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDR-MSAYNMDNRDFPGENIADRILM 180 (260)
T ss_dssp TTCEEEETTCTTTTTHHH---HHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTT-EEEECSCTTTCCCCSCEEEEEE
T ss_pred CccEEEECcceEcHHHHH---HHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCce-EEEEEcchHHhccCCCCCEEEE
Confidence 578999999999999964 444332 4999999999988 77888899999988 9999999999987788999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.++. .+.++++.+.+.||+||++.
T Consensus 181 ~~p~------~~~~~l~~a~~~l~~gG~lh 204 (260)
T d2frna1 181 GYVV------RTHEFIPKALSIAKDGAIIH 204 (260)
T ss_dssp CCCS------SGGGGHHHHHHHEEEEEEEE
T ss_pred CCCC------chHHHHHHHHhhcCCCCEEE
Confidence 7653 34567888889999999873
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.22 E-value=6.7e-12 Score=125.32 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++++|||+|||+|.++.. +++ .| .+|+|||.++.|+ .++++.+.|+.. ++++++|+.+....++||+|++
T Consensus 120 ~g~~VLDiGcGsG~l~i~---aa~-~g--~~V~gvDis~~av~~A~~na~~n~~~---~~~~~~d~~~~~~~~~fD~V~a 190 (254)
T d2nxca1 120 PGDKVLDLGTGSGVLAIA---AEK-LG--GKALGVDIDPMVLPQAEANAKRNGVR---PRFLEGSLEAALPFGPFDLLVA 190 (254)
T ss_dssp TTCEEEEETCTTSHHHHH---HHH-TT--CEEEEEESCGGGHHHHHHHHHHTTCC---CEEEESCHHHHGGGCCEEEEEE
T ss_pred ccCEEEEcccchhHHHHH---HHh-cC--CEEEEEECChHHHHHHHHHHHHcCCc---eeEEeccccccccccccchhhh
Confidence 678999999999999853 333 45 3899999999887 888888888873 7889999887655579999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+++. +...+++..+.+.|||||++|-
T Consensus 191 ni~~-----~~l~~l~~~~~~~LkpGG~lil 216 (254)
T d2nxca1 191 NLYA-----ELHAALAPRYREALVPGGRALL 216 (254)
T ss_dssp ECCH-----HHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccc-----ccHHHHHHHHHHhcCCCcEEEE
Confidence 7542 1235677888899999999884
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.22 E-value=2.4e-11 Score=120.26 Aligned_cols=104 Identities=13% Similarity=0.068 Sum_probs=75.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiI 418 (626)
++.+|||||||+|..+..++.+ +. .+|+|||.|+.++ .|.+..+..+...+ |.++.+|+.... ..++||+|
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~----~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~-v~f~~~D~~~~~~~~~~~fD~V 97 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERA----GI-GEYYGVDIAEVSINDARVRARNMKRRFK-VFFRAQDSYGRHMDLGKEFDVI 97 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHH----TC-SEEEEEESCHHHHHHHHHHHHTSCCSSE-EEEEESCTTTSCCCCSSCEEEE
T ss_pred CcCEEEEecccCcHHHHHHHHc----CC-CeEEEecCCHHHHHHHHHHHHhcCCCcc-eEEEEcchhhhcccccccceEE
Confidence 5689999999999887543332 22 3899999999887 55555444555454 999999996654 34689999
Q ss_pred Eeccc-cccCCC-CCcHHHHHHHHHhcccCcEEEe
Q psy17734 419 VSELL-GSFGDN-ELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 419 VSEll-gsfg~~-El~pe~L~~~~r~LkpgGi~IP 451 (626)
+|... .++..+ +....++..+.+.|||||++|-
T Consensus 98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~ 132 (252)
T d1ri5a_ 98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 132 (252)
T ss_dssp EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred EEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEE
Confidence 98543 333333 2346788999999999999774
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=2.3e-11 Score=118.09 Aligned_cols=104 Identities=15% Similarity=0.121 Sum_probs=76.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIM 418 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiI 418 (626)
.++.+|||||||+|.++..+ +++.+ .+|+|||.|+.++ .|++.....+.. +++++++|++++..+ ++||+|
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l---~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~--~~~f~~~d~~~~~~~~~~fD~I 131 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRL---LLPLF--REVDMVDITEDFLVQAKTYLGEEGKR--VRNYFCCGLQDFTPEPDSYDVI 131 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHT---TTTTC--SEEEEEESCHHHHHHHHHHTGGGGGG--EEEEEECCGGGCCCCSSCEEEE
T ss_pred CCCCEEEEeccCCCHhhHHH---HHhcC--CEEEEeecCHHHhhcccccccccccc--cccccccccccccccccccccc
Confidence 35678999999999998532 33233 4899999999887 666655555543 599999999999764 789999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
++-..-.....+...+++..+.+.|||||.++-
T Consensus 132 ~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i 164 (222)
T d2ex4a1 132 WIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVI 164 (222)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccchhhhhhhHHHHHHHhcCCcceEEE
Confidence 984332222222234688999999999998874
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.18 E-value=5.9e-12 Score=115.88 Aligned_cols=113 Identities=15% Similarity=0.044 Sum_probs=83.7
Q ss_pred HHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEE
Q psy17734 324 EAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIV 402 (626)
Q Consensus 324 ~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi 402 (626)
+++...+... .++++|||+|||+|.++. .|+.+ |+ .+|++||.|+.++ .+++++..++..++ ++++
T Consensus 3 e~~fn~l~~~-------~~g~~vlDl~~GtG~~~i---ea~~r-ga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~-~~ii 69 (152)
T d2esra1 3 GAIFNMIGPY-------FNGGRVLDLFAGSGGLAI---EAVSR-GM-SAAVLVEKNRKAQAIIQDNIIMTKAENR-FTLL 69 (152)
T ss_dssp HHHHHHHCSC-------CCSCEEEEETCTTCHHHH---HHHHT-TC-CEEEEECCCHHHHHHHHHHHHTTTCGGG-EEEE
T ss_pred HHHHHHHHhh-------CCCCeEEEcCCccCHHHH---HHHHh-Cc-ceeeeehhchhhhhhhhhhhhhcccccc-hhhh
Confidence 4555555432 367899999999999995 44443 44 4999999999987 77888888888887 9999
Q ss_pred Eeccccc--CCCCCccEEEeccccccCCCCCcHHHHHHHH--HhcccCcEEEec
Q psy17734 403 SEDMRTW--NAPEKADIMVSELLGSFGDNELSPECLYAAQ--KYLKEDGISIPY 452 (626)
Q Consensus 403 ~~D~~~~--~~p~k~DiIVSEllgsfg~~El~pe~L~~~~--r~LkpgGi~IP~ 452 (626)
++|+.++ ...++||+|+.++.-. .+.....++.+. ++|+|||+++..
T Consensus 70 ~~D~~~~l~~~~~~fDiIf~DPPy~---~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 70 KMEAERAIDCLTGRFDLVFLDPPYA---KETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp CSCHHHHHHHBCSCEEEEEECCSSH---HHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cccccccccccccccceeEechhhc---cchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 9999885 2347899999987621 112244566553 579999998865
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.16 E-value=4.5e-11 Score=116.17 Aligned_cols=116 Identities=14% Similarity=0.179 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCC
Q psy17734 315 DPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQW 394 (626)
Q Consensus 315 D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~ 394 (626)
+..++..+++-+...+.+..+ ++.+|||+|||+|.++..+ ++ .| .+|+|||.|+.++...+. ++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~------~~~~vLDiGcG~G~~~~~l---~~-~~--~~v~giD~s~~~l~~a~~---~~~ 85 (246)
T d2avna1 21 ETPKWKLYHRLIGSFLEEYLK------NPCRVLDLGGGTGKWSLFL---QE-RG--FEVVLVDPSKEMLEVARE---KGV 85 (246)
T ss_dssp CSHHHHHHHHHHHHHHHHHCC------SCCEEEEETCTTCHHHHHH---HT-TT--CEEEEEESCHHHHHHHHH---HTC
T ss_pred ccccchHHHHHHHHHHHHhcC------CCCEEEEECCCCchhcccc---cc-cc--eEEEEeeccccccccccc---ccc
Confidence 334445555555555554332 4578999999999998643 33 34 499999999988743332 222
Q ss_pred CCCcEEEEEecccccCCC-CCccEEEec--cccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 395 AQSDVTIVSEDMRTWNAP-EKADIMVSE--LLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 395 ~~~nV~vi~~D~~~~~~p-~k~DiIVSE--llgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..++.+|+++++.+ ++||+|+|. .+.++ +...++|+.+.+.|||||+++-.
T Consensus 86 ----~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~---~d~~~~l~~i~r~Lk~gG~~ii~ 139 (246)
T d2avna1 86 ----KNVVEAKAEDLPFPSGAFEAVLALGDVLSYV---ENKDKAFSEIRRVLVPDGLLIAT 139 (246)
T ss_dssp ----SCEEECCTTSCCSCTTCEEEEEECSSHHHHC---SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ----cccccccccccccccccccceeeecchhhhh---hhHHHHHHHHHhhcCcCcEEEEE
Confidence 34678999999875 789999973 23322 22356889999999999998743
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.14 E-value=1e-10 Score=117.89 Aligned_cols=101 Identities=14% Similarity=0.090 Sum_probs=75.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++.. .++..+...+|+|||.++.++ .+++.....+. +++++.+|+.+++.+++||+|+|
T Consensus 27 ~~~~ILDiGcG~G~~~~~---la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~---~~~f~~~d~~~~~~~~~fD~v~~ 100 (281)
T d2gh1a1 27 KPVHIVDYGCGYGYLGLV---LMPLLPEGSKYTGIDSGETLLAEARELFRLLPY---DSEFLEGDATEIELNDKYDIAIC 100 (281)
T ss_dssp SCCEEEEETCTTTHHHHH---HTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS---EEEEEESCTTTCCCSSCEEEEEE
T ss_pred CcCEEEEecCcCCHHHHH---HHHhCCCCCEEEEEecchhHhhhhhcccccccc---cccccccccccccccCCceEEEE
Confidence 567999999999999853 333333225999999999877 66666554444 59999999999988889999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
-..-... +....+|+.+.+.|||||.++
T Consensus 101 ~~~l~~~--~d~~~~l~~~~~~LkpgG~li 128 (281)
T d2gh1a1 101 HAFLLHM--TTPETMLQKMIHSVKKGGKII 128 (281)
T ss_dssp ESCGGGC--SSHHHHHHHHHHTEEEEEEEE
T ss_pred ehhhhcC--CCHHHHHHHHHHHcCcCcEEE
Confidence 4432221 223568999999999999876
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.14 E-value=7.2e-11 Score=117.09 Aligned_cols=138 Identities=19% Similarity=0.153 Sum_probs=91.1
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHhh---ccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHH
Q psy17734 308 TYEVFEKDPIKYIRYQEAVQQALLD---RVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVV 384 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI~~al~d---~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~ 384 (626)
.|+.+..|+.....|.+++...-.. .+.+..+..+..+|||||||+|.++..++++ . ...+++++|..+....
T Consensus 43 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~---~-p~~~~~~~D~~~~~~~ 118 (253)
T d1tw3a2 43 FYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARR---A-PHVSATVLEMAGTVDT 118 (253)
T ss_dssp HHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHH---C-TTCEEEEEECTTHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHh---c-ceeEEEEccCHHHHHH
Confidence 3555666666666666655321100 0000011235579999999999998654433 2 2269999998655568
Q ss_pred HHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 385 GLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 385 a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+++.....+..++ |+++.+|+.+.. +.++|+|++..+-+....+....+|..+.+.|||||.++-
T Consensus 119 a~~~~~~~~~~~r-v~~~~~D~~~~~-~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i 183 (253)
T d1tw3a2 119 ARSYLKDEGLSDR-VDVVEGDFFEPL-PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILI 183 (253)
T ss_dssp HHHHHHHTTCTTT-EEEEECCTTSCC-SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHhhcccc-hhhccccchhhc-ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEE
Confidence 8888888888887 999999998743 4689999875432222223334678999999999998764
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.12 E-value=7.8e-11 Score=114.52 Aligned_cols=96 Identities=15% Similarity=0.170 Sum_probs=69.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
++.+|||||||+|.++..+ ++ .| .+|+|||.|+.++...+.. ..+ +++++++|++++..+++||+|++-
T Consensus 20 ~~~~VLDiGcG~G~~~~~l---~~-~g--~~v~giD~s~~~i~~a~~~----~~~-~~~~~~~~~~~~~~~~~fD~I~~~ 88 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRL---QE-HF--NDITCVEASEEAISHAQGR----LKD-GITYIHSRFEDAQLPRRYDNIVLT 88 (225)
T ss_dssp CSSCEEEESCTTSHHHHHH---TT-TC--SCEEEEESCHHHHHHHHHH----SCS-CEEEEESCGGGCCCSSCEEEEEEE
T ss_pred CCCcEEEEeCCCcHHHHHH---HH-cC--CeEEEEeCcHHHhhhhhcc----ccc-cccccccccccccccccccccccc
Confidence 4567999999999998532 22 34 3899999999877333322 123 499999999999988999999883
Q ss_pred c-ccccCCCCCcHHHHHHHH-HhcccCcEEEe
Q psy17734 422 L-LGSFGDNELSPECLYAAQ-KYLKEDGISIP 451 (626)
Q Consensus 422 l-lgsfg~~El~pe~L~~~~-r~LkpgGi~IP 451 (626)
- +.+. +....+|..+. ++|||||.++-
T Consensus 89 ~vleh~---~d~~~~l~~i~~~~Lk~gG~l~i 117 (225)
T d2p7ia1 89 HVLEHI---DDPVALLKRINDDWLAEGGRLFL 117 (225)
T ss_dssp SCGGGC---SSHHHHHHHHHHTTEEEEEEEEE
T ss_pred ceeEec---CCHHHHHHHHHHHhcCCCceEEE
Confidence 2 2222 22345677775 78999998773
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.09 E-value=1.6e-10 Score=114.91 Aligned_cols=99 Identities=15% Similarity=0.175 Sum_probs=79.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMV 419 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIV 419 (626)
.++.+|||+|||+|.++..++++.. .+.+|+++|.++.+. .|+++.++.+..+ ||+++++|+.+...++.||.|+
T Consensus 84 ~pG~rVLEiG~GsG~lt~~la~~v~---~~g~V~~vD~~e~~~~~A~~n~~~~~~~~-nv~~~~~Di~~~~~~~~fD~V~ 159 (250)
T d1yb2a1 84 RPGMDILEVGVGSGNMSSYILYALN---GKGTLTVVERDEDNLKKAMDNLSEFYDIG-NVRTSRSDIADFISDQMYDAVI 159 (250)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHT---TSSEEEEECSCHHHHHHHHHHHHTTSCCT-TEEEECSCTTTCCCSCCEEEEE
T ss_pred CCcCEEEEeeeeCcHHHHHHHHHhC---CCcEEEEEECCHHHHHHHHHHHHHhcCCC-ceEEEEeeeecccccceeeeee
Confidence 4789999999999999977666543 235999999999766 7777776654444 5999999999886667899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.++.. ..++++.+.+.|||||+++
T Consensus 160 ld~p~-------p~~~l~~~~~~LKpGG~lv 183 (250)
T d1yb2a1 160 ADIPD-------PWNHVQKIASMMKPGSVAT 183 (250)
T ss_dssp ECCSC-------GGGSHHHHHHTEEEEEEEE
T ss_pred ecCCc-------hHHHHHHHHHhcCCCceEE
Confidence 86532 2458899999999999987
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.08 E-value=2.2e-10 Score=109.20 Aligned_cols=90 Identities=18% Similarity=0.123 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSE 421 (626)
+.+|||||||+|.++. ..+ +++|||.|+.++...+.. +++++++|+++++.+ ++||+|+|.
T Consensus 37 ~~~vLDiGcG~G~~~~----~~~------~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~~~fD~I~~~ 98 (208)
T d1vlma_ 37 EGRGVEIGVGTGRFAV----PLK------IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMV 98 (208)
T ss_dssp SSCEEEETCTTSTTHH----HHT------CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred CCeEEEECCCCccccc----ccc------eEEEEeCChhhccccccc--------ccccccccccccccccccccccccc
Confidence 3479999999998863 222 678999999877433321 499999999999875 789999985
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+-... +....++..+.+.|||||.++-.
T Consensus 99 ~~l~h~--~d~~~~l~~~~~~L~pgG~l~i~ 127 (208)
T d1vlma_ 99 TTICFV--DDPERALKEAYRILKKGGYLIVG 127 (208)
T ss_dssp SCGGGS--SCHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccc--cccccchhhhhhcCCCCceEEEE
Confidence 432222 22467899999999999988754
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.05 E-value=8.2e-11 Score=110.01 Aligned_cols=103 Identities=11% Similarity=0.036 Sum_probs=72.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCC-----------CCCcEEEEEeccccc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQW-----------AQSDVTIVSEDMRTW 409 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~-----------~~~nV~vi~~D~~~~ 409 (626)
++.+|||+|||+|.++..+++. | .+|+|||.|+.++ .+++..+..+. .. +++++.+|+.++
T Consensus 20 ~~~rvLd~GCG~G~~a~~la~~----G--~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~l 92 (201)
T d1pjza_ 20 PGARVLVPLCGKSQDMSWLSGQ----G--YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAP-GIEIWCGDFFAL 92 (201)
T ss_dssp TTCEEEETTTCCSHHHHHHHHH----C--CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECS-SSEEEEECCSSS
T ss_pred CCCEEEEecCcCCHHHHHHHHc----C--CceEeecccHHHHHHHHHHhccccchhhhhhhhhcccc-ccceeccccccc
Confidence 6789999999999998654432 4 5999999999888 44443322111 12 378899999887
Q ss_pred CCC--CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 410 NAP--EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 410 ~~p--~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
... ..+|+|++-.+..+...+.....+..+.+.|||||.++-
T Consensus 93 ~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l 136 (201)
T d1pjza_ 93 TARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL 136 (201)
T ss_dssp THHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred ccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEE
Confidence 643 589999884443333223345678888999999998763
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.02 E-value=4.2e-10 Score=111.81 Aligned_cols=101 Identities=14% Similarity=0.091 Sum_probs=73.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
+..+|||+|||+|.++..++.- .. .+|++||.++.++ .|++... +. . +++++++|++++..+ ++||+|+
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~---~~--~~v~~vD~s~~~l~~a~~~~~--~~-~-~~~~~~~d~~~~~~~~~~fD~I~ 163 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTK---LY--ATTDLLEPVKHMLEEAKRELA--GM-P-VGKFILASMETATLPPNTYDLIV 163 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHH---HC--SEEEEEESCHHHHHHHHHHTT--TS-S-EEEEEESCGGGCCCCSSCEEEEE
T ss_pred CCCeEEEecccCChhhHHHHhh---cC--ceEEEEcCCHHHHHhhhcccc--cc-c-cceeEEccccccccCCCccceEE
Confidence 5679999999999998643322 22 3899999999887 4444332 21 2 599999999999865 7899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+-++-.....+...++|..+.+.|||||.++-
T Consensus 164 ~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii 195 (254)
T d1xtpa_ 164 IQWTAIYLTDADFVKFFKHCQQALTPNGYIFF 195 (254)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeccccccchhhhHHHHHHHHHhcCCCcEEEE
Confidence 96543332222234678999999999998774
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.00 E-value=4.9e-10 Score=113.05 Aligned_cols=131 Identities=13% Similarity=0.139 Sum_probs=83.5
Q ss_pred HHHHhhCC-HHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HH
Q psy17734 308 TYEVFEKD-PIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VG 385 (626)
Q Consensus 308 tYe~fe~D-~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a 385 (626)
.|+.+..| ..|...|.+.+...+... ++.+|||+|||+|.++..+++ .| .+|+|||.|+.++ .|
T Consensus 29 ~~~~~~~~~~~r~~~~~~~l~~~l~~~--------~~~~vLD~GcG~G~~~~~la~----~g--~~v~gvD~S~~ml~~A 94 (292)
T d1xvaa_ 29 VWQLYIGDTRSRTAEYKAWLLGLLRQH--------GCHRVLDVACGTGVDSIMLVE----EG--FSVTSVDASDKMLKYA 94 (292)
T ss_dssp HHHHHHHTTCCBCHHHHHHHHHHHHHT--------TCCEEEESSCTTSHHHHHHHH----TT--CEEEEEESCHHHHHHH
T ss_pred HHHHHhcchhhhHHHHHHHHHHHhhhc--------CCCEEEEecCCCcHHHHHHHH----cC--CeeeeccCchHHHHHH
Confidence 44444433 233455555555555441 457899999999999865433 24 4999999999887 66
Q ss_pred HHHHHHcCCCCC--cEEEEEeccccc----CCCCCccEEEec--cccccCCCCC----cHHHHHHHHHhcccCcEEEec
Q psy17734 386 LKYKKEEQWAQS--DVTIVSEDMRTW----NAPEKADIMVSE--LLGSFGDNEL----SPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 386 ~~~~~~n~~~~~--nV~vi~~D~~~~----~~p~k~DiIVSE--llgsfg~~El----~pe~L~~~~r~LkpgGi~IP~ 452 (626)
++.....+.... ...+...++... ...++||+|++- .+.++.+... ...+|..+.+.|||||++|-+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 95 LKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp HHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHhcccccccceeeeeeccccccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 666554443211 134455555432 334789999873 3444433322 345899999999999999863
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=3.5e-10 Score=110.46 Aligned_cols=101 Identities=11% Similarity=0.011 Sum_probs=72.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---CCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA---PEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~---p~k~Di 417 (626)
++.+|||||||+|.++.. .++..+ .+|++||.|+.++ .+++..... .. ++.++.+|..++.. ..+||.
T Consensus 53 ~g~~VLdIGcG~G~~a~~---~a~~~~--~~v~~id~s~~~~~~a~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~fD~ 124 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASK---VQEAPI--DEHWIIECNDGVFQRLRDWAPRQ--TH-KVIPLKGLWEDVAPTLPDGHFDG 124 (229)
T ss_dssp TCEEEEEECCTTSHHHHH---HHTSCE--EEEEEEECCHHHHHHHHHHGGGC--SS-EEEEEESCHHHHGGGSCTTCEEE
T ss_pred CCCeEEEeeccchHHHHH---HHHcCC--CeEEEeCCCHHHHHHHHHHhhhc--cc-ccccccccccccccccccccccc
Confidence 567899999999998753 333222 4899999999876 555544333 33 38999998876532 268999
Q ss_pred EEeccccccCCCCCc---HHHHHHHHHhcccCcEEE
Q psy17734 418 MVSELLGSFGDNELS---PECLYAAQKYLKEDGISI 450 (626)
Q Consensus 418 IVSEllgsfg~~El~---pe~L~~~~r~LkpgGi~I 450 (626)
|+.+...+....+.. +.++..+.|+|||||+++
T Consensus 125 i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~ 160 (229)
T d1zx0a1 125 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT 160 (229)
T ss_dssp EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEE
T ss_pred eeecccccccccccccCHHHHHHHHHHHcCCCcEEE
Confidence 987765444433433 457888999999999986
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.99 E-value=7.8e-10 Score=111.16 Aligned_cols=104 Identities=16% Similarity=0.170 Sum_probs=77.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++.. . .+.+|+|+|+|+.|+ .|++++++++.. ||+++++|+.+.-...+||+|||
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~---~-p~~~v~avDis~~Al~~A~~Na~~~~~~--~v~~~~~d~~~~~~~~~fDlIvs 181 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASE---R-PDCEIIAVDRMPDAVSLAQRNAQHLAIK--NIHILQSDWFSALAGQQFAMIVS 181 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHH---C-TTSEEEEECSSHHHHHHHHHHHHHHTCC--SEEEECCSTTGGGTTCCEEEEEE
T ss_pred cccceeeeehhhhHHHHHHHhh---C-CcceeeeccchhHHHhHHHHHHHHhCcc--cceeeecccccccCCCceeEEEe
Confidence 4568999999999998643322 2 236999999999998 888999889885 59999999987544469999999
Q ss_pred ccccccCC-----------CCC-------------cHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGD-----------NEL-------------SPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~-----------~El-------------~pe~L~~~~r~LkpgGi~IP~ 452 (626)
++.- +-. +|- ...++..+.++|+|||.++-.
T Consensus 182 NPPY-i~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE 236 (274)
T d2b3ta1 182 NPPY-IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 236 (274)
T ss_dssp CCCC-BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cchh-hhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence 9752 211 111 012455667889999998764
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=98.98 E-value=5.9e-10 Score=107.96 Aligned_cols=97 Identities=18% Similarity=0.098 Sum_probs=71.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIM 418 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiI 418 (626)
.++.+|||||||+|.++..+++. .+...+|+++|.++.+. .++++.+..+.. |+.++.+|..+... ..+||+|
T Consensus 74 ~~g~~VLdiG~GtG~~s~~la~~---~~~~g~V~~id~~~~~~~~a~~~~~~~~~~--n~~~~~~d~~~~~~~~~~fD~I 148 (213)
T d1dl5a1 74 DKGMRVLEIGGGTGYNAAVMSRV---VGEKGLVVSVEYSRKICEIAKRNVERLGIE--NVIFVCGDGYYGVPEFSPYDVI 148 (213)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH---HCTTCEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEESCGGGCCGGGCCEEEE
T ss_pred cccceEEEecCccchhHHHHHHH---hCCCCcEEEeecchhhHHHhhhhHhhhccc--ccccccCchHHccccccchhhh
Confidence 36789999999999998644433 34345999999999776 777777777765 69999999887543 4689999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
++... . +..| +.+.+.|||||++|
T Consensus 149 ~~~~~----~-~~~p---~~l~~~LkpGG~lv 172 (213)
T d1dl5a1 149 FVTVG----V-DEVP---ETWFTQLKEGGRVI 172 (213)
T ss_dssp EECSB----B-SCCC---HHHHHHEEEEEEEE
T ss_pred hhhcc----H-HHhH---HHHHHhcCCCcEEE
Confidence 98431 1 2333 33456799999876
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.98 E-value=5.4e-10 Score=111.14 Aligned_cols=134 Identities=19% Similarity=0.140 Sum_probs=90.8
Q ss_pred HHHHhhCCHHHHHHHHHHHHHH-------HhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCH
Q psy17734 308 TYEVFEKDPIKYIRYQEAVQQA-------LLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNM 380 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI~~a-------l~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np 380 (626)
.|+.+.+|+.+-+.|.+++... +.+. .+-.+..+|||||||+|.++..++++- ...+++++|..+
T Consensus 44 ~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~----~d~~~~~~vlDvG~G~G~~~~~l~~~~----P~~~~~~~Dlp~ 115 (256)
T d1qzza2 44 FWEDLSADVALADSFDALMSCDEDLAYEAPADA----YDWSAVRHVLDVGGGNGGMLAAIALRA----PHLRGTLVELAG 115 (256)
T ss_dssp HHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHT----SCCTTCCEEEEETCTTSHHHHHHHHHC----TTCEEEEEECHH
T ss_pred HHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhc----CCCccCCEEEEECCCCCHHHHHHHHhh----cCcEEEEecChH
Confidence 3555666776666666654321 1111 112245789999999999986544432 226999999854
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 381 SAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 381 ~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
.+..+++.++..+..++ |+++.+|+.+ +.|.++|++++..+-+....+....+|..+.+.|||||.++-
T Consensus 116 ~~~~a~~~~~~~~~~~r-i~~~~~d~~~-~~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI 184 (256)
T d1qzza2 116 PAERARRRFADAGLADR-VTVAEGDFFK-PLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLV 184 (256)
T ss_dssp HHHHHHHHHHHTTCTTT-EEEEECCTTS-CCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCcce-eeeeeeeccc-cccccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEE
Confidence 55578888888888888 9999999987 345679998774432222223345678899999999997663
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.95 E-value=7.2e-10 Score=114.07 Aligned_cols=109 Identities=17% Similarity=0.124 Sum_probs=84.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-----CCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-----APEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-----~p~k~ 415 (626)
++.+|||+|||+|.++..++ + .|+ .+|++||.|+.++ .++++...|++.++ ++++++|+.++. ..++|
T Consensus 145 ~g~~VLDl~~g~G~~si~~a---~-~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~-~~~~~~d~~~~~~~~~~~~~~f 218 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAA---I-AGA-DEVIGIDKSPRAIETAKENAKLNGVEDR-MKFIVGSAFEEMEKLQKKGEKF 218 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHH---H-TTC-SEEEEEESCHHHHHHHHHHHHHTTCGGG-EEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCeeecccCcccchhhhhh---h-cCC-cEEEeecCCHHHHHHHHHHHHHcCCCcc-ceeeechhhhhhHHHHhccCCC
Confidence 57899999999999996433 3 343 4999999999887 88899999999876 999999998752 23689
Q ss_pred cEEEeccccccCCCCC-c-------HHHHHHHHHhcccCcEEEeccceee
Q psy17734 416 DIMVSELLGSFGDNEL-S-------PECLYAAQKYLKEDGISIPYNYTSY 457 (626)
Q Consensus 416 DiIVSEllgsfg~~El-~-------pe~L~~~~r~LkpgGi~IP~~~t~y 457 (626)
|+||+++.- +..... . .+++..+.++|||||+++-++++-.
T Consensus 219 D~Vi~DpP~-~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~ 267 (324)
T d2as0a2 219 DIVVLDPPA-FVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 267 (324)
T ss_dssp EEEEECCCC-SCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred CchhcCCcc-ccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 999999874 333222 1 2356677789999999997766543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.94 E-value=1.5e-09 Score=104.88 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=71.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC----CC
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP----EK 414 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p----~k 414 (626)
..++.+|||+|||+|..+..++.. .+. .+|||||.++.++ .+++..+.. + |+.++.+|.++...+ ..
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~---v~~-g~V~gvDis~~~i~~a~~~a~~~--~--ni~~i~~d~~~~~~~~~~~~~ 125 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADI---VDE-GIIYAVEYSAKPFEKLLELVRER--N--NIIPLLFDASKPWKYSGIVEK 125 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHH---TTT-SEEEEECCCHHHHHHHHHHHHHC--S--SEEEECSCTTCGGGTTTTCCC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHh---ccC-CeEEEEeCCHHHHHHHHHHhhcc--C--CceEEEeeccCccccccccce
Confidence 447899999999999988654433 332 5999999999887 444444333 2 699999999886532 46
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+|++++++. ..+....++..+.++|||||.++-
T Consensus 126 vd~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i 158 (209)
T d1nt2a_ 126 VDLIYQDIA----QKNQIEILKANAEFFLKEKGEVVI 158 (209)
T ss_dssp EEEEEECCC----STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEeccc----ChhhHHHHHHHHHHHhccCCeEEE
Confidence 777766432 223346688999999999998764
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.93 E-value=3.5e-10 Score=105.87 Aligned_cols=113 Identities=15% Similarity=0.060 Sum_probs=76.6
Q ss_pred HHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEE
Q psy17734 323 QEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTI 401 (626)
Q Consensus 323 ~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~v 401 (626)
++++...+...+. ++.+|||+|||+|.++. .|+.+ | .+|++||.|+.++ .++++.+.++.+++ |..
T Consensus 28 ~e~lf~~l~~~~~------~g~~vLDl~~G~G~~~i---~a~~~-g--a~vv~vD~~~~a~~~~~~N~~~~~~~~~-v~~ 94 (171)
T d1ws6a1 28 RKALFDYLRLRYP------RRGRFLDPFAGSGAVGL---EAASE-G--WEAVLVEKDPEAVRLLKENVRRTGLGAR-VVA 94 (171)
T ss_dssp HHHHHHHHHHHCT------TCCEEEEETCSSCHHHH---HHHHT-T--CEEEEECCCHHHHHHHHHHHHHHTCCCE-EEC
T ss_pred HHHHHHHhhcccc------CCCeEEEeccccchhhh---hhhhc-c--chhhhcccCHHHHhhhhHHHHhhccccc-eee
Confidence 4566555554332 56799999999999985 44443 4 3899999999887 77888888998765 666
Q ss_pred EEeccccc---CCCCCccEEEeccccccCCCCCcHHHHHHH--HHhcccCcEEEec
Q psy17734 402 VSEDMRTW---NAPEKADIMVSELLGSFGDNELSPECLYAA--QKYLKEDGISIPY 452 (626)
Q Consensus 402 i~~D~~~~---~~p~k~DiIVSEllgsfg~~El~pe~L~~~--~r~LkpgGi~IP~ 452 (626)
..+|.... ...++||+|++++.-... ..+.+..+ ..+|+|||+++-+
T Consensus 95 ~~~d~~~~~~~~~~~~fD~If~DPPY~~~----~~~~l~~l~~~~ll~~~g~ivie 146 (171)
T d1ws6a1 95 LPVEVFLPEAKAQGERFTVAFMAPPYAMD----LAALFGELLASGLVEAGGLYVLQ 146 (171)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCCTTSC----TTHHHHHHHHHTCEEEEEEEEEE
T ss_pred eehhcccccccccCCccceeEEccccccC----HHHHHHHHHHcCCcCCCeEEEEE
Confidence 66654321 123789999999862222 22333332 3579999998743
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=2.9e-09 Score=106.35 Aligned_cols=91 Identities=15% Similarity=0.229 Sum_probs=66.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVS 420 (626)
++.+|||+|||+|.++..++.+. .+.+|+|||.|+.++...+.. . . +++++.+|+++++.+ +.||+|++
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~----~~~~~~giD~s~~~~~~a~~~----~-~-~~~~~~~d~~~l~~~~~sfD~v~~ 153 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADAL----PEITTFGLDVSKVAIKAAAKR----Y-P-QVTFCVASSHRLPFSDTSMDAIIR 153 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTC----TTSEEEEEESCHHHHHHHHHH----C-T-TSEEEECCTTSCSBCTTCEEEEEE
T ss_pred CCCEEEEeCCCCcHHHHHHHHHC----CCCEEEEecchHhhhhhhhcc----c-c-cccceeeehhhccCCCCCEEEEee
Confidence 56799999999999986443332 236999999999887333221 1 2 599999999999865 78999997
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
-.. +..+.++.|.|||||.++-
T Consensus 154 ~~~---------~~~~~e~~rvLkpgG~l~~ 175 (268)
T d1p91a_ 154 IYA---------PCKAEELARVVKPGGWVIT 175 (268)
T ss_dssp ESC---------CCCHHHHHHHEEEEEEEEE
T ss_pred cCC---------HHHHHHHHHHhCCCcEEEE
Confidence 321 1225667899999999873
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.90 E-value=1.4e-09 Score=111.71 Aligned_cols=106 Identities=17% Similarity=0.074 Sum_probs=80.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-----CCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-----APEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-----~p~k~ 415 (626)
++++|||+|||+|.++..++ + .+ .+|+|||.|+.++ .++++.+.|++. |++++++|+.++. ..++|
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a---~-g~--~~V~~vD~s~~al~~a~~n~~~ngl~--~~~~i~~d~~~~~~~~~~~~~~f 216 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLA---L-GF--REVVAVDSSAEALRRAEENARLNGLG--NVRVLEANAFDLLRRLEKEGERF 216 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHH---H-HE--EEEEEEESCHHHHHHHHHHHHHTTCT--TEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCeeeccCCCCcHHHHHHH---h-cC--CcEEeecchHHHHHHHHHHHHHcCCC--CcceeeccHHHHhhhhHhhhcCC
Confidence 46799999999999996433 2 22 4999999999887 888888899985 5999999998752 23689
Q ss_pred cEEEeccccccCCCCCc-------HHHHHHHHHhcccCcEEEeccce
Q psy17734 416 DIMVSELLGSFGDNELS-------PECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 416 DiIVSEllgsfg~~El~-------pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
|+||+++.-+....... .+++..+.++|||||+++-++++
T Consensus 217 D~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 217 DLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp EEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 99999986433332222 24566778899999999876554
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.90 E-value=2.2e-09 Score=107.43 Aligned_cols=99 Identities=17% Similarity=0.120 Sum_probs=78.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMV 419 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIV 419 (626)
.++.+|||+|||+|.++..++++.. ...+|+++|.++.+. .|+++....++.+. +++..+|+.+--....+|.|+
T Consensus 102 ~pG~~VLDiG~GsG~lt~~lA~~~~---~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~-v~~~~~d~~~~~~~~~~D~V~ 177 (266)
T d1o54a_ 102 KEGDRIIDTGVGSGAMCAVLARAVG---SSGKVFAYEKREEFAKLAESNLTKWGLIER-VTIKVRDISEGFDEKDVDALF 177 (266)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTT---TTCEEEEECCCHHHHHHHHHHHHHTTCGGG-EEEECCCGGGCCSCCSEEEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHHHhccccC-cEEEeccccccccccceeeeE
Confidence 4789999999999999976555543 335999999999776 88888888888665 999999986654457799987
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
..+. ..+++++.+.+.|||||.++
T Consensus 178 ~d~p-------~p~~~l~~~~~~LKpGG~lv 201 (266)
T d1o54a_ 178 LDVP-------DPWNYIDKCWEALKGGGRFA 201 (266)
T ss_dssp ECCS-------CGGGTHHHHHHHEEEEEEEE
T ss_pred ecCC-------CHHHHHHHHHhhcCCCCEEE
Confidence 6432 23568999999999999987
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=4.2e-09 Score=105.09 Aligned_cols=106 Identities=14% Similarity=0.100 Sum_probs=68.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhh--cCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEE--EEeccccc-------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKE--ANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTI--VSEDMRTW------- 409 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~--~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~v--i~~D~~~~------- 409 (626)
+..+|||||||+|.++..++.+... .+...+++|||.|+.++ .+.+.+....... ++.+ ...+.+++
T Consensus 40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLE-NVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCT-TEEEEEECSCHHHHHHHHTTS
T ss_pred CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccc-cccccchhhhhhhhcchhccc
Confidence 3457999999999998776655322 22335789999999877 5555543322212 2443 44444332
Q ss_pred CCCCCccEEEecc-ccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 410 NAPEKADIMVSEL-LGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 410 ~~p~k~DiIVSEl-lgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
..+++||+|++-- +.++ +.....|..+.+.|||||.++-
T Consensus 119 ~~~~~fD~I~~~~~l~~~---~d~~~~l~~l~~~LkpgG~l~i 158 (280)
T d1jqea_ 119 KELQKWDFIHMIQMLYYV---KDIPATLKFFHSLLGTNAKMLI 158 (280)
T ss_dssp SSCCCEEEEEEESCGGGC---SCHHHHHHHHHHTEEEEEEEEE
T ss_pred CCCCceeEEEEccceecC---CCHHHHHHHHHhhCCCCCEEEE
Confidence 1347899999833 3222 2346789999999999998763
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.85 E-value=5.3e-09 Score=104.40 Aligned_cols=99 Identities=21% Similarity=0.236 Sum_probs=77.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc--CCCCCcEEEEEecccccCCC-CCcc
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE--QWAQSDVTIVSEDMRTWNAP-EKAD 416 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n--~~~~~nV~vi~~D~~~~~~p-~k~D 416 (626)
.++.+|||+|||+|.++..++++. |.+.+|+++|.++... .|+++++.. +..+ |++++++|..+...+ +.||
T Consensus 95 ~PG~~VLE~G~GsG~lt~~La~~v---gp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~-nv~~~~~d~~~~~~~~~~fD 170 (264)
T d1i9ga_ 95 FPGARVLEAGAGSGALTLSLLRAV---GPAGQVISYEQRADHAEHARRNVSGCYGQPPD-NWRLVVSDLADSELPDGSVD 170 (264)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHH---CTTSEEEEECSCHHHHHHHHHHHHHHHTSCCT-TEEEECSCGGGCCCCTTCEE
T ss_pred CCCCEEEecCcCCcHHHHHHHHhh---CCCcEEEEecCCHHHHHHHHHhhhhhccCCCc-eEEEEecccccccccCCCcc
Confidence 478999999999999997766654 3335999999998765 777776542 3334 599999999987654 6899
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.|+.++.. ..+++..+.+.|||||.++
T Consensus 171 aV~ldlp~-------P~~~l~~~~~~LkpGG~lv 197 (264)
T d1i9ga_ 171 RAVLDMLA-------PWEVLDAVSRLLVAGGVLM 197 (264)
T ss_dssp EEEEESSC-------GGGGHHHHHHHEEEEEEEE
T ss_pred eEEEecCC-------HHHHHHHHHhccCCCCEEE
Confidence 99875432 2358889999999999875
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=5.4e-09 Score=98.66 Aligned_cols=114 Identities=15% Similarity=0.145 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcE
Q psy17734 321 RYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDV 399 (626)
Q Consensus 321 ~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV 399 (626)
.-++++...+...+ ++.+|||++||+|.++. .|+.+ |+ .+|++||+|+.++ .++++++..+.. ++
T Consensus 29 ~vre~lfn~l~~~~-------~~~~vLDlfaGsG~~gi---ealsr-Ga-~~v~~VE~~~~a~~~~k~N~~~~~~~--~~ 94 (183)
T d2fpoa1 29 RVRETLFNWLAPVI-------VDAQCLDCFAGSGALGL---EALSR-YA-AGATLIEMDRAVSQQLIKNLATLKAG--NA 94 (183)
T ss_dssp HHHHHHHHHHHHHH-------TTCEEEETTCTTCHHHH---HHHHT-TC-SEEEEECSCHHHHHHHHHHHHHTTCC--SE
T ss_pred HHHHHHHhhhhccc-------chhhhhhhhccccceee---eEEec-Cc-ceeEEEEEeechhhHHHHHHhhcccc--ce
Confidence 34566665554322 46799999999999995 45553 33 4999999999888 667777666554 59
Q ss_pred EEEEecccccC--CCCCccEEEeccccccCCCCCcHHHHHHHHH--hcccCcEEEe
Q psy17734 400 TIVSEDMRTWN--APEKADIMVSELLGSFGDNELSPECLYAAQK--YLKEDGISIP 451 (626)
Q Consensus 400 ~vi~~D~~~~~--~p~k~DiIVSEllgsfg~~El~pe~L~~~~r--~LkpgGi~IP 451 (626)
+++++|+.++- ..++||+|+.++. +.. ....++++.+.+ +|+++|++|-
T Consensus 95 ~ii~~d~~~~l~~~~~~fDlIf~DPP--Y~~-~~~~~~l~~l~~~~~L~~~~iIii 147 (183)
T d2fpoa1 95 RVVNSNAMSFLAQKGTPHNIVFVDPP--FRR-GLLEETINLLEDNGWLADEALIYV 147 (183)
T ss_dssp EEECSCHHHHHSSCCCCEEEEEECCS--SST-TTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred eeeeecccccccccccccCEEEEcCc--ccc-chHHHHHHHHHHCCCCCCCeEEEE
Confidence 99999988762 3478999999986 221 234666766654 6999998874
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=3.2e-09 Score=103.19 Aligned_cols=102 Identities=7% Similarity=-0.112 Sum_probs=71.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHH-HHHHHHHc----------------CCCCCcEEEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVV-GLKYKKEE----------------QWAQSDVTIVSE 404 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~-a~~~~~~n----------------~~~~~nV~vi~~ 404 (626)
++.+|||+|||+|..+..+++ .| .+|+|||.|+.|+. +.+..... .-.. +|+++++
T Consensus 45 ~~~rvLd~GCG~G~~a~~LA~----~G--~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~ 117 (229)
T d2bzga1 45 SGLRVFFPLCGKAVEMKWFAD----RG--HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSG-NISLYCC 117 (229)
T ss_dssp CSCEEEETTCTTCTHHHHHHH----TT--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTS-SEEEEES
T ss_pred CCCEEEEeCCCCcHHHHHHHh----CC--CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCC-cEEEEEc
Confidence 567999999999999865433 34 49999999999884 33332110 1123 4999999
Q ss_pred cccccCC--CCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 405 DMRTWNA--PEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 405 D~~~~~~--p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|..++.. ...+|+|++-..-.....+..+..+..+.+.|||||.++
T Consensus 118 d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~ 165 (229)
T d2bzga1 118 SIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYL 165 (229)
T ss_dssp CGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEE
T ss_pred chhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEE
Confidence 9988753 368999987443233333334667888999999999865
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.83 E-value=9.7e-09 Score=98.66 Aligned_cols=103 Identities=17% Similarity=0.254 Sum_probs=75.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC---CCCCccEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---APEKADIM 418 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---~p~k~DiI 418 (626)
..+|||||||+|-.+.. .|+. ..+..++|||.++.++ .+.+..++.++. ||.++++|++++. .+..+|.|
T Consensus 30 ~PlvLeIGcG~G~~~~~---lA~~-~p~~~~iGiD~~~~~i~~a~~~~~~~~l~--Nv~~~~~Da~~l~~~~~~~~~d~v 103 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISG---MAKQ-NPDINYIGIELFKSVIVTAVQKVKDSEAQ--NVKLLNIDADTLTDVFEPGEVKRV 103 (204)
T ss_dssp CCEEEEECCTTSHHHHH---HHHH-CTTSEEEEECSCHHHHHHHHHHHHHSCCS--SEEEECCCGGGHHHHCCTTSCCEE
T ss_pred CceEEEEEecCcHHHHH---HHHh-CCCCcEEEeecchHHHHHHHHHHHHHhcc--CchhcccchhhhhcccCchhhhcc
Confidence 35899999999998753 2332 2336999999998776 667777778876 7999999998763 34789988
Q ss_pred EeccccccCCCC-----C-cHHHHHHHHHhcccCcEEEe
Q psy17734 419 VSELLGSFGDNE-----L-SPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 419 VSEllgsfg~~E-----l-~pe~L~~~~r~LkpgGi~IP 451 (626)
..-....+-..+ + .+++|+.+.|.|||||++.-
T Consensus 104 ~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i 142 (204)
T d2fcaa1 104 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF 142 (204)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred ccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEE
Confidence 763332221111 1 26899999999999998753
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.83 E-value=4.5e-09 Score=107.72 Aligned_cols=109 Identities=13% Similarity=0.129 Sum_probs=81.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-----CCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-----APEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-----~p~k~ 415 (626)
++++|||++||+|.++..++. .|+ .+|++||.++.++ .++++.+.|+++..+++++.+|+.++- ..++|
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~----~ga-~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~f 218 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAM----GGA-MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTY 218 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHH----TTB-SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCceeecCCCCcHHHHHHHh----CCC-ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCC
Confidence 468999999999999954332 343 4899999999877 888899999996445999999997752 23689
Q ss_pred cEEEeccccccCCC-CC-------cHHHHHHHHHhcccCcEEEecccee
Q psy17734 416 DIMVSELLGSFGDN-EL-------SPECLYAAQKYLKEDGISIPYNYTS 456 (626)
Q Consensus 416 DiIVSEllgsfg~~-El-------~pe~L~~~~r~LkpgGi~IP~~~t~ 456 (626)
|+||.++.- |+.. +. ..+++..+.++|+|||+++-++++.
T Consensus 219 D~Ii~DPP~-f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 219 DIIIIDPPS-FARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp EEEEECCCC-C-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CEEEEcChh-hccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 999999873 3321 11 1346777888999999999776653
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.81 E-value=7.5e-09 Score=101.11 Aligned_cols=103 Identities=13% Similarity=0.162 Sum_probs=73.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC----CCCc
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA----PEKA 415 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~----p~k~ 415 (626)
..++.+|||+|||+|.++..+++ ..|.+.+|||||.++.+...++... .... |+..+..|.+.... ...+
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~---~VG~~G~V~aVD~s~~~l~~a~~~a-~~~~--~~~~i~~d~~~~~~~~~~~~~v 144 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSD---IVGWEGKIFGIEFSPRVLRELVPIV-EERR--NIVPILGDATKPEEYRALVPKV 144 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHH---HHCTTSEEEEEESCHHHHHHHHHHH-SSCT--TEEEEECCTTCGGGGTTTCCCE
T ss_pred cCCCCEEEEeccCCCHHHHHHHH---HhCCCCEEEEEeCcHHHHHHHHHHH-HhcC--CceEEEEECCCcccccccccce
Confidence 45789999999999999965444 3444469999999998874333332 2223 58888888876542 3678
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
|+|+..+. ..+....++..+.++|||||+++-.
T Consensus 145 D~i~~d~~----~~~~~~~~l~~~~~~LkpgG~lvi~ 177 (227)
T d1g8aa_ 145 DVIFEDVA----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEEcc----ccchHHHHHHHHHHhcccCCeEEEE
Confidence 99987543 2233466889999999999988743
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.80 E-value=8.1e-09 Score=101.02 Aligned_cols=100 Identities=19% Similarity=0.216 Sum_probs=67.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC--C--CCc
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA--P--EKA 415 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~--p--~k~ 415 (626)
..++.+|||+|||+|..+..++..+. ..+|||||.++.++..++.+.. ... |+..+.+|.+.... + ..+
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~~----~g~V~aVDiS~~~i~~a~~~a~-~~~--ni~~i~~d~~~~~~~~~~~~~v 144 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIAD----KGIVYAIEYAPRIMRELLDACA-ERE--NIIPILGDANKPQEYANIVEKV 144 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTT----TSEEEEEESCHHHHHHHHHHTT-TCT--TEEEEECCTTCGGGGTTTCCCE
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhCC----CCEEEEEeCcHHHHHHHHHHHh-hhc--ccceEEEeeccCccccccccee
Confidence 34789999999999999876554432 2599999999987743333322 222 58889998887542 2 334
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|++++.+ ...+....++..+.++|||||.++
T Consensus 145 ~~i~~~~----~~~~~~~~~l~~~~r~LKpgG~~~ 175 (230)
T d1g8sa_ 145 DVIYEDV----AQPNQAEILIKNAKWFLKKGGYGM 175 (230)
T ss_dssp EEEEECC----CSTTHHHHHHHHHHHHEEEEEEEE
T ss_pred EEeeccc----cchHHHHHHHHHHHHhcccCceEE
Confidence 4444422 122334567888999999999865
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=5.2e-09 Score=101.98 Aligned_cols=98 Identities=19% Similarity=0.153 Sum_probs=69.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCC---CCcEEEEEecccccCC-CCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWA---QSDVTIVSEDMRTWNA-PEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~---~~nV~vi~~D~~~~~~-p~k~D 416 (626)
++.+|||||||+|-++..+++.. +...+|++||.++.++ .+++++++.+.. ..+++++.+|..+... ..+||
T Consensus 76 ~g~~VLdiG~GsGy~ta~la~l~---~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD 152 (224)
T d1i1na_ 76 EGAKALDVGSGSGILTACFARMV---GCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD 152 (224)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHH---CTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHh---CCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhh
Confidence 67899999999999885444433 3335999999999776 777766654431 1159999999887544 36899
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.|++.- ...+ .| +.+.+.|||||++|
T Consensus 153 ~I~~~~----~~~~-ip---~~l~~~LkpGG~LV 178 (224)
T d1i1na_ 153 AIHVGA----AAPV-VP---QALIDQLKPGGRLI 178 (224)
T ss_dssp EEEECS----BBSS-CC---HHHHHTEEEEEEEE
T ss_pred hhhhhc----chhh-cC---HHHHhhcCCCcEEE
Confidence 998742 1122 23 34567899999986
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=7.1e-09 Score=106.61 Aligned_cols=103 Identities=18% Similarity=0.162 Sum_probs=72.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH-------cCCCCCcEEEEEecccccCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE-------EQWAQSDVTIVSEDMRTWNAPE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~-------n~~~~~nV~vi~~D~~~~~~p~ 413 (626)
++.+|||+|||+|.++. .+++..++ .+|+|||+++.+. .|.+..+. .|....+|+++++|+.+.+..+
T Consensus 151 ~~~~vlD~GcG~G~~~~---~~a~~~~~-~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~ 226 (328)
T d1nw3a_ 151 DDDLFVDLGSGVGQVVL---QVAAATNC-KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE 226 (328)
T ss_dssp TTCEEEEETCTTSHHHH---HHHHHCCC-SEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHH
T ss_pred CCCEEEEcCCCCCHHHH---HHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccccc
Confidence 67899999999999984 45555565 4899999999876 55443322 2333335999999998875432
Q ss_pred ---CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 414 ---KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 414 ---k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
.+|+|+++- +...+.+...|..+.+.|||||.+|-
T Consensus 227 ~~~~advi~~~~---~~f~~~~~~~l~e~~r~LKpGg~iv~ 264 (328)
T d1nw3a_ 227 RIANTSVIFVNN---FAFGPEVDHQLKERFANMKEGGRIVS 264 (328)
T ss_dssp HHHHCSEEEECC---TTTCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred ccCcceEEEEcc---eecchHHHHHHHHHHHhCCCCcEEEE
Confidence 468887643 22222334567778889999999874
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.78 E-value=2.4e-08 Score=95.91 Aligned_cols=102 Identities=18% Similarity=0.228 Sum_probs=75.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC---CCCCccEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---APEKADIM 418 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---~p~k~DiI 418 (626)
...|||||||+|-+... .|+. ..+..++|||.++.++ .+++.+.++++. ||.++.+|++++. .+..+|.|
T Consensus 32 ~plvLdIGcG~G~~~~~---lA~~-~p~~~~iGid~~~~~v~~a~~~~~~~~l~--Ni~~~~~da~~l~~~~~~~~~~~i 105 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSG---MAKQ-NPDINYIGIDIQKSVLSYALDKVLEVGVP--NIKLLWVDGSDLTDYFEDGEIDRL 105 (204)
T ss_dssp CCEEEEESCTTSHHHHH---HHHH-CTTSEEEEEESCHHHHHHHHHHHHHHCCS--SEEEEECCSSCGGGTSCTTCCSEE
T ss_pred CCeEEEEeccCCHHHHH---HHHH-CCCCceEEEeccHHHHHHHHHhhhhhccc--cceeeecCHHHHhhhccCCceehh
Confidence 35899999999998753 3332 2236999999999766 677777778886 7999999998864 23688988
Q ss_pred EeccccccCCC-----CC-cHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELLGSFGDN-----EL-SPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEllgsfg~~-----El-~pe~L~~~~r~LkpgGi~I 450 (626)
.......+.-. .+ .+++|+.+.+.|||||.++
T Consensus 106 ~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~ 143 (204)
T d1yzha1 106 YLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIH 143 (204)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEE
T ss_pred cccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEE
Confidence 76433322211 11 3789999999999999985
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.78 E-value=8.1e-09 Score=97.41 Aligned_cols=115 Identities=12% Similarity=0.067 Sum_probs=84.9
Q ss_pred HHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEE
Q psy17734 322 YQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVT 400 (626)
Q Consensus 322 Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~ 400 (626)
-++|+...+... .++.+|||++||+|.++. .|+.+ |+ .+|++||.|+.++ .++++++..+..++ ++
T Consensus 28 vrealFn~l~~~-------~~~~~vLDlfaGsG~~g~---ea~sr-Ga-~~v~~ve~~~~a~~~~~~N~~~~~~~~~-~~ 94 (182)
T d2fhpa1 28 VKESIFNMIGPY-------FDGGMALDLYSGSGGLAI---EAVSR-GM-DKSICIEKNFAALKVIKENIAITKEPEK-FE 94 (182)
T ss_dssp HHHHHHHHHCSC-------CSSCEEEETTCTTCHHHH---HHHHT-TC-SEEEEEESCHHHHHHHHHHHHHHTCGGG-EE
T ss_pred HHHHHHHHHHHh-------cCCCEEEEcccccccccc---eeeec-ch-hHHHHHHHHHHHHHHHHHHhhhhhcccc-cc
Confidence 456666665432 357899999999999995 45553 33 4999999999887 77778877777766 99
Q ss_pred EEEecccccC-----CCCCccEEEeccccccCCCCCcHHHHHHHH--HhcccCcEEEec
Q psy17734 401 IVSEDMRTWN-----APEKADIMVSELLGSFGDNELSPECLYAAQ--KYLKEDGISIPY 452 (626)
Q Consensus 401 vi~~D~~~~~-----~p~k~DiIVSEllgsfg~~El~pe~L~~~~--r~LkpgGi~IP~ 452 (626)
++++|+.++- ...+||+|+.++. |.. ....+.++.+. .+|+++|++|-+
T Consensus 95 i~~~D~~~~l~~~~~~~~~fDlIflDPP--Y~~-~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 95 VRKMDANRALEQFYEEKLQFDLVLLDPP--YAK-QEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp EEESCHHHHHHHHHHTTCCEEEEEECCC--GGG-CCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cccccchhhhhhhcccCCCcceEEechh--hhh-hHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 9999987642 2358999999986 222 23456777664 479999998865
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=1.3e-08 Score=104.56 Aligned_cols=99 Identities=20% Similarity=0.256 Sum_probs=73.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH----------cCCCCCcEEEEEeccccc
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE----------EQWAQSDVTIVSEDMRTW 409 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~----------n~~~~~nV~vi~~D~~~~ 409 (626)
.++.+|||+|||+|.++..++++.. .+.+|+++|.++.+. .|++++++ .++.+. |+++++|+.+.
T Consensus 97 ~pG~rVLE~GtGsG~lt~~LAr~vg---~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~n-v~~~~~di~~~ 172 (324)
T d2b25a1 97 NPGDTVLEAGSGSGGMSLFLSKAVG---SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN-VDFIHKDISGA 172 (324)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHC---TTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC-EEEEESCTTCC
T ss_pred CCCCEEEEecccccHHHHHHHHHhC---CCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccc-eeEEecchhhc
Confidence 3789999999999999976666543 335999999999766 77777653 245554 99999999876
Q ss_pred CC---CCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 410 NA---PEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 410 ~~---p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.. ...||.|+.++.. ..++++.+.+.|||||.++
T Consensus 173 ~~~~~~~~fD~V~LD~p~-------P~~~l~~~~~~LKpGG~lv 209 (324)
T d2b25a1 173 TEDIKSLTFDAVALDMLN-------PHVTLPVFYPHLKHGGVCA 209 (324)
T ss_dssp C-------EEEEEECSSS-------TTTTHHHHGGGEEEEEEEE
T ss_pred ccccCCCCcceEeecCcC-------HHHHHHHHHHhccCCCEEE
Confidence 42 2579999875432 1247888999999999876
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.77 E-value=1.8e-08 Score=96.43 Aligned_cols=73 Identities=22% Similarity=0.226 Sum_probs=58.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMV 419 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIV 419 (626)
.++++|||+|||+|.++..+ +. .|+ .+|+|||.++.++ .++++.+.++. + ++++.+|..++. ++||+||
T Consensus 45 l~g~~vLDlg~GtG~l~i~a---~~-~g~-~~v~~vdi~~~~~~~a~~N~~~~~~--~-~~~~~~d~~~~~--~~fD~Vi 114 (201)
T d1wy7a1 45 IEGKVVADLGAGTGVLSYGA---LL-LGA-KEVICVEVDKEAVDVLIENLGEFKG--K-FKVFIGDVSEFN--SRVDIVI 114 (201)
T ss_dssp STTCEEEEETCTTCHHHHHH---HH-TTC-SEEEEEESCHHHHHHHHHHTGGGTT--S-EEEEESCGGGCC--CCCSEEE
T ss_pred CCCCEEEECcCcchHHHHHH---HH-cCC-CEEEEEcCcHHHHHHHHHHHHHcCC--C-ceEEECchhhhC--CcCcEEE
Confidence 36789999999999998543 33 343 4999999999887 77777665554 4 999999998864 7899999
Q ss_pred eccc
Q psy17734 420 SELL 423 (626)
Q Consensus 420 SEll 423 (626)
+++.
T Consensus 115 ~nPP 118 (201)
T d1wy7a1 115 MNPP 118 (201)
T ss_dssp ECCC
T ss_pred EcCc
Confidence 9986
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.74 E-value=5e-08 Score=97.50 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=61.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--CCCccEEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--PEKADIMV 419 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--p~k~DiIV 419 (626)
..+|+|+|||+|.++..++ +..+ .+|+|+|+|+.|+ +|+++++.+++.++ +.+..+|..+... .++||+||
T Consensus 111 ~~~vld~g~GsG~i~~~la---~~~~--~~v~a~Dis~~Al~~A~~Na~~~~~~~~-~~i~~~~~~~~~~~~~~~fDlIV 184 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVA---KFSD--AIVFATDVSSKAVEIARKNAERHGVSDR-FFVRKGEFLEPFKEKFASIEMIL 184 (271)
T ss_dssp CCEEEEESCTTSHHHHHHH---HHSS--CEEEEEESCHHHHHHHHHHHHHTTCTTS-EEEEESSTTGGGGGGTTTCCEEE
T ss_pred ccEEEEeeeeeehhhhhhh---hccc--ceeeechhhhhHHHHHHHHHHHcCCCce-eEEeecccccccccccCcccEEE
Confidence 4689999999999986432 3333 5999999999998 89999999999988 9999999877532 26899999
Q ss_pred eccc
Q psy17734 420 SELL 423 (626)
Q Consensus 420 SEll 423 (626)
|++.
T Consensus 185 sNPP 188 (271)
T d1nv8a_ 185 SNPP 188 (271)
T ss_dssp ECCC
T ss_pred Eccc
Confidence 9874
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.74 E-value=6.4e-09 Score=99.40 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=53.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMV 419 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIV 419 (626)
.++++|||+|||+|.|+.. ++. .|+ .+|+|||.++.++ .++++. . +++++.+|+.+++ ++||+||
T Consensus 47 l~Gk~VLDlGcGtG~l~i~---a~~-~ga-~~V~~vDid~~a~~~ar~N~------~-~~~~~~~D~~~l~--~~fD~Vi 112 (197)
T d1ne2a_ 47 IGGRSVIDAGTGNGILACG---SYL-LGA-ESVTAFDIDPDAIETAKRNC------G-GVNFMVADVSEIS--GKYDTWI 112 (197)
T ss_dssp SBTSEEEEETCTTCHHHHH---HHH-TTB-SEEEEEESCHHHHHHHHHHC------T-TSEEEECCGGGCC--CCEEEEE
T ss_pred CCCCEEEEeCCCCcHHHHH---HHH-cCC-CcccccccCHHHHHHHHHcc------c-cccEEEEehhhcC--CcceEEE
Confidence 4688999999999999853 333 343 4899999999887 444432 2 4999999998865 7899999
Q ss_pred eccc
Q psy17734 420 SELL 423 (626)
Q Consensus 420 SEll 423 (626)
+++.
T Consensus 113 ~NPP 116 (197)
T d1ne2a_ 113 MNPP 116 (197)
T ss_dssp ECCC
T ss_pred eCcc
Confidence 9986
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.74 E-value=1.1e-08 Score=104.24 Aligned_cols=102 Identities=17% Similarity=0.189 Sum_probs=76.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-----CCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-----APEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-----~p~k~ 415 (626)
++.+|||++||+|.++..+ ++ .|+ +|++||.++.++ .++++...|++.+.+++++++|+.++- ..++|
T Consensus 132 ~~~rVLdlf~~tG~~sl~a---a~-~GA--~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~f 205 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVA---AA-AGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTY 205 (309)
T ss_dssp SCCEEEEETCTTCHHHHHH---HH-TTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCB
T ss_pred CCCeEEEecCCCcHHHHHH---Hh-CCC--eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCC
Confidence 5679999999999999643 33 343 899999999887 888898899998645999999998752 23689
Q ss_pred cEEEeccccccCCC---CC------cHHHHHHHHHhcccCcEEE
Q psy17734 416 DIMVSELLGSFGDN---EL------SPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 416 DiIVSEllgsfg~~---El------~pe~L~~~~r~LkpgGi~I 450 (626)
|+||.++.- |+.. +. .+..+..+.++|+|||.++
T Consensus 206 D~IilDPP~-f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~l 248 (309)
T d2igta1 206 DIILTDPPK-FGRGTHGEVWQLFDHLPLMLDICREILSPKALGL 248 (309)
T ss_dssp SEEEECCCS-EEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEE
T ss_pred CEEEECCCc-ccccccchhHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 999999873 3221 11 2345567788999988644
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.69 E-value=1.5e-08 Score=98.73 Aligned_cols=91 Identities=20% Similarity=0.180 Sum_probs=63.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccc-cCCCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRT-WNAPEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~-~~~p~k~DiIV 419 (626)
++.+|||||||+|.++.. +++.. .+|++||.++.+. .+.++. .... ||+++.+|... +....+||.|+
T Consensus 70 ~g~~VLdIG~GsGy~ta~---La~l~---~~V~aiE~~~~~~~~A~~~~--~~~~--nv~~~~~d~~~g~~~~~pfD~Ii 139 (224)
T d1vbfa_ 70 KGQKVLEIGTGIGYYTAL---IAEIV---DKVVSVEINEKMYNYASKLL--SYYN--NIKLILGDGTLGYEEEKPYDRVV 139 (224)
T ss_dssp TTCEEEEECCTTSHHHHH---HHHHS---SEEEEEESCHHHHHHHHHHH--TTCS--SEEEEESCGGGCCGGGCCEEEEE
T ss_pred ccceEEEecCCCCHHHHH---HHHHh---cccccccccHHHHHHHHHHH--hccc--ccccccCchhhcchhhhhHHHHH
Confidence 678999999999999853 33333 3999999999877 444432 2333 69999999876 34346899998
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
..- .. +..|+ ...+.|||||++|
T Consensus 140 v~~----a~-~~ip~---~l~~qLk~GGrLV 162 (224)
T d1vbfa_ 140 VWA----TA-PTLLC---KPYEQLKEGGIMI 162 (224)
T ss_dssp ESS----BB-SSCCH---HHHHTEEEEEEEE
T ss_pred hhc----ch-hhhhH---HHHHhcCCCCEEE
Confidence 732 11 23333 3446799999876
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.62 E-value=3.3e-08 Score=95.62 Aligned_cols=94 Identities=20% Similarity=0.193 Sum_probs=69.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc-CCCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW-NAPEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~-~~p~k~DiIV 419 (626)
++.+|||||||+|-++..++ +..| .+|++||.++... .+.+++++.++. ||+++++|..+- ....+||.|+
T Consensus 78 ~g~~VLeIGsGsGY~taila---~l~g--~~V~~ie~~~~l~~~a~~~l~~~g~~--nv~~~~gd~~~g~~~~~pfD~Ii 150 (215)
T d1jg1a_ 78 PGMNILEVGTGSGWNAALIS---EIVK--TDVYTIERIPELVEFAKRNLERAGVK--NVHVILGDGSKGFPPKAPYDVII 150 (215)
T ss_dssp TTCCEEEECCTTSHHHHHHH---HHHC--SCEEEEESCHHHHHHHHHHHHHTTCC--SEEEEESCGGGCCGGGCCEEEEE
T ss_pred ccceEEEecCCCChhHHHHH---HhhC--ceeEEEeccHHHHHHHHHHHHHcCCc--eeEEEECccccCCcccCcceeEE
Confidence 67899999999999985333 3334 3899999999766 788888877775 799999999874 4457899998
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
..- .. +..|+. ..+.|||||+++
T Consensus 151 v~~----a~-~~ip~~---l~~qL~~gGrLv 173 (215)
T d1jg1a_ 151 VTA----GA-PKIPEP---LIEQLKIGGKLI 173 (215)
T ss_dssp ECS----BB-SSCCHH---HHHTEEEEEEEE
T ss_pred eec----cc-ccCCHH---HHHhcCCCCEEE
Confidence 732 11 234443 335699999986
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.57 E-value=1.4e-07 Score=96.06 Aligned_cols=114 Identities=18% Similarity=0.309 Sum_probs=81.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH---cCCCCCcEEEEEeccccc--CCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE---EQWAQSDVTIVSEDMRTW--NAPEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~---n~~~~~nV~vi~~D~~~~--~~p~k~ 415 (626)
..++||.+|.|.|..+..++ +... ..+|++||++|..+ .+++.... +.+.+.+++++.+|.+++ ..++++
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll---~~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~y 152 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVL---KHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERY 152 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHT---TSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCE
T ss_pred CcceEEEeCCCchHHHHHHH---hcCC-cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcc
Confidence 45789999999999875433 3222 25999999999877 56655422 223333499999999986 345789
Q ss_pred cEEEeccccccCCCC----C-cHHHHHHHHHhcccCcEEEeccceeeEE
Q psy17734 416 DIMVSELLGSFGDNE----L-SPECLYAAQKYLKEDGISIPYNYTSYIA 459 (626)
Q Consensus 416 DiIVSEllgsfg~~E----l-~pe~L~~~~r~LkpgGi~IP~~~t~y~a 459 (626)
|+||.++...++... + ..++++.+.+.|+|||+++-+....+..
T Consensus 153 DvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~ 201 (312)
T d1uira_ 153 DVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLT 201 (312)
T ss_dssp EEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC-
T ss_pred cEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccc
Confidence 999999876655332 2 3789999999999999998765544443
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=2.2e-07 Score=91.66 Aligned_cols=77 Identities=10% Similarity=0.033 Sum_probs=61.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-------APE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-------~p~ 413 (626)
+..++||+|||+|.++..++... .+ .+|+|+|+++.|+ +|+++++.|++.++ +++++.+..+.- ..+
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~--~~--~~~~~~Di~~~al~~A~~N~~~n~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 135 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATL--NG--WYFLATEVDDMCFNYAKKNVEQNNLSDL-IKVVKVPQKTLLMDALKEESEI 135 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH--HC--CEEEEEESCHHHHHHHHHHHHHTTCTTT-EEEEECCTTCSSTTTSTTCCSC
T ss_pred ccceEEEeCCCchHHHHHHHHhC--CC--ccccceecCHHHHHHHHHHHHHhCCCcc-eeeeeeccHHhhhhhhhhcccC
Confidence 45689999999999986543322 23 5999999999988 99999999999998 999997765432 125
Q ss_pred CccEEEeccc
Q psy17734 414 KADIMVSELL 423 (626)
Q Consensus 414 k~DiIVSEll 423 (626)
+||+|||++.
T Consensus 136 ~fD~ivsNPP 145 (250)
T d2h00a1 136 IYDFCMCNPP 145 (250)
T ss_dssp CBSEEEECCC
T ss_pred ceeEEEecCc
Confidence 7999999987
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.53 E-value=9.1e-08 Score=92.97 Aligned_cols=99 Identities=18% Similarity=0.143 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCC--ccEEEEEeCCHHHH-HHHHHHHH-----cCCCCCcEEEEEecccccC-CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANR--KVRVYAVEKNMSAV-VGLKYKKE-----EQWAQSDVTIVSEDMRTWN-AP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~--~~~V~AVE~np~a~-~a~~~~~~-----n~~~~~nV~vi~~D~~~~~-~p 412 (626)
++.+|||||||+|-++..+.+.+...|. ..+|++||.++.+. .+.+++.. .+.. ||+++++|..+.. ..
T Consensus 80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~--nv~~~~~d~~~~~~~~ 157 (223)
T d1r18a_ 80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG--QLLIVEGDGRKGYPPN 157 (223)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT--SEEEEESCGGGCCGGG
T ss_pred CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCcc--EEEEEecccccccccc
Confidence 6789999999999998766665544332 23899999998765 66555432 2333 6999999988754 34
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.+||.|+..- .. +..|+ ...+.|||||++|
T Consensus 158 ~~fD~Iiv~~----a~-~~~p~---~l~~~Lk~gG~lV 187 (223)
T d1r18a_ 158 APYNAIHVGA----AA-PDTPT---ELINQLASGGRLI 187 (223)
T ss_dssp CSEEEEEECS----CB-SSCCH---HHHHTEEEEEEEE
T ss_pred cceeeEEEEe----ec-hhchH---HHHHhcCCCcEEE
Confidence 6899998832 22 22343 3457899999975
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.52 E-value=1.3e-07 Score=88.87 Aligned_cols=117 Identities=12% Similarity=0.082 Sum_probs=82.3
Q ss_pred HHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEE
Q psy17734 322 YQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVT 400 (626)
Q Consensus 322 Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~ 400 (626)
-++|+...+...+ .+.+|||+.||||.++. +|..+ |+ .+|+.||+|..++ ..+++++..+..+...+
T Consensus 30 vrealFn~l~~~~-------~~~~vLDlFaGsG~~gl---EalSR-GA-~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~ 97 (183)
T d2ifta1 30 VKETLFNWLMPYI-------HQSECLDGFAGSGSLGF---EALSR-QA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAE 97 (183)
T ss_dssp HHHHHHHHHHHHH-------TTCEEEETTCTTCHHHH---HHHHT-TC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEE
T ss_pred HHHHHHHHhhhhc-------ccceEeecccCccceee---eeeee-cc-eeeEEeecccchhhhHhhHHhhhcccccccc
Confidence 3456666554322 46799999999999995 55553 33 4999999999887 66677776666554478
Q ss_pred EEEecccccC----CCCCccEEEeccccccCCCCCcHHHHHHHHH--hcccCcEEEecc
Q psy17734 401 IVSEDMRTWN----APEKADIMVSELLGSFGDNELSPECLYAAQK--YLKEDGISIPYN 453 (626)
Q Consensus 401 vi~~D~~~~~----~p~k~DiIVSEllgsfg~~El~pe~L~~~~r--~LkpgGi~IP~~ 453 (626)
++..|..++. ...+||+|+.++.-. .+...+.++.+.. +|+++|++|-+.
T Consensus 98 ~~~~d~~~~l~~~~~~~~fDlIFlDPPY~---~~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 98 VINQSSLDFLKQPQNQPHFDVVFLDPPFH---FNLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp EECSCHHHHTTSCCSSCCEEEEEECCCSS---SCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cccccccccccccccCCcccEEEechhHh---hhhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 8888765532 235799999998732 1234667777654 699999988653
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=4.4e-08 Score=95.58 Aligned_cols=107 Identities=17% Similarity=0.058 Sum_probs=64.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCC----------------------
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQS---------------------- 397 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~---------------------- 397 (626)
.++.+|||+|||+|.++.. .++. +. .+|+|+|.++.++ .+++.++.......
T Consensus 50 ~~g~~vLDlGcG~G~~~~~---~~~~-~~-~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVL---AACD-SF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKE 124 (257)
T ss_dssp CCEEEEEESSCTTCCGGGT---TGGG-TE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCCCEEEEECCCCCHhHHH---Hhcc-cc-CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHH
Confidence 3567999999999988742 2332 22 4899999999887 56555543322110
Q ss_pred -----cE-EEEEecccc--c---CCCCCccEEEecc-ccccCCCC-CcHHHHHHHHHhcccCcEEEec
Q psy17734 398 -----DV-TIVSEDMRT--W---NAPEKADIMVSEL-LGSFGDNE-LSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 398 -----nV-~vi~~D~~~--~---~~p~k~DiIVSEl-lgsfg~~E-l~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+ .+...+... . ...++||+|++-. +.++...+ ....++..+.+.|||||.+|-.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~ 192 (257)
T d2a14a1 125 EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTT 192 (257)
T ss_dssp HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEE
Confidence 01 112222211 1 1236899999833 33333222 2356789999999999998854
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.51 E-value=3.5e-07 Score=91.40 Aligned_cols=109 Identities=17% Similarity=0.233 Sum_probs=81.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHH--HcCCCCCcEEEEEeccccc--CCCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKK--EEQWAQSDVTIVSEDMRTW--NAPEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~--~n~~~~~nV~vi~~D~~~~--~~p~k~D 416 (626)
..++||.+|.|.|..+.. +.+..+. .+|+.||++|..+ ++++... ...+.+.+++++.+|.+++ ...+++|
T Consensus 75 ~p~~vLiiGgG~G~~~~~---~l~~~~~-~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yD 150 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIRE---ILKHPSV-KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYD 150 (274)
T ss_dssp SCCEEEEESCTTCHHHHH---HTTCTTC-SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEE
T ss_pred CcceEEecCCCCcHHHHH---HHhcCCc-ceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCC
Confidence 457899999999999854 3333333 4999999999877 5555443 2334555699999999885 2357899
Q ss_pred EEEeccccccCCCCC--cHHHHHHHHHhcccCcEEEeccc
Q psy17734 417 IMVSELLGSFGDNEL--SPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 417 iIVSEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+||.++....+.... ..|+++.+.+.|+|||+++-+..
T Consensus 151 vIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 151 VIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp EEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 999998765544443 47899999999999999996654
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.47 E-value=1.6e-07 Score=98.86 Aligned_cols=104 Identities=18% Similarity=0.119 Sum_probs=65.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc-----CCCCC--cEEE-EEecccccCC
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE-----QWAQS--DVTI-VSEDMRTWNA 411 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n-----~~~~~--nV~v-i~~D~~~~~~ 411 (626)
.++.+|||||||+|.++. .+|+..|+ .+|+|||+++.++ .|++..+.. .|+.+ .+.+ +.++..+...
T Consensus 215 kpgd~fLDLGCG~G~~vl---~aA~~~g~-~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~ 290 (406)
T d1u2za_ 215 KKGDTFMDLGSGVGNCVV---QAALECGC-ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNR 290 (406)
T ss_dssp CTTCEEEEESCTTSHHHH---HHHHHHCC-SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHH
T ss_pred CCCCEEEeCCCCCcHHHH---HHHHHcCC-CeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccc
Confidence 477899999999999984 55555565 4999999999876 555544321 11111 1333 3344433221
Q ss_pred ----CCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 412 ----PEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 412 ----p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
-..+|++..+- +...+.....|..+.+.|||||.+|-
T Consensus 291 ~d~~~~~adVV~inn---~~f~~~l~~~L~ei~r~LKPGGrIVs 331 (406)
T d1u2za_ 291 VAELIPQCDVILVNN---FLFDEDLNKKVEKILQTAKVGCKIIS 331 (406)
T ss_dssp HHHHGGGCSEEEECC---TTCCHHHHHHHHHHHTTCCTTCEEEE
T ss_pred cccccccceEEEEec---ccCchHHHHHHHHHHHhcCCCcEEEE
Confidence 04678887642 22223345677888899999999874
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.47 E-value=1.8e-07 Score=90.22 Aligned_cols=105 Identities=12% Similarity=0.082 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-------CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-------PE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-------p~ 413 (626)
+.++||++|||+|.-+.+++++... ..+|++||.++... .+++.+...++.++ |+++.||..++-. ..
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~---~g~v~sid~~~~~~~~a~~~~~~~gl~~~-i~l~~Gd~~e~l~~l~~~~~~~ 131 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQP---GARLLTMEMNPDYAAITQQMLNFAGLQDK-VTILNGASQDLIPQLKKKYDVD 131 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCT---TCEEEEEESCHHHHHHHHHHHHHHTCGGG-EEEEESCHHHHGGGHHHHSCCC
T ss_pred CCCEEEEEccCchhHHHHHHHhCCC---ccEEEEEeccHHHHHHHHHHHHHcCCCcc-ceeeeccccccccchhhccccc
Confidence 3479999999999998765544332 25999999999765 88888888999887 9999999987521 25
Q ss_pred CccEEEeccccccCCCCCcHH--HHHHHHHhcccCcEEEeccce
Q psy17734 414 KADIMVSELLGSFGDNELSPE--CLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe--~L~~~~r~LkpgGi~IP~~~t 455 (626)
++|+|+.+ ++.+.... .+....++|||||++|-+..-
T Consensus 132 ~~D~ifiD-----~~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl 170 (214)
T d2cl5a1 132 TLDMVFLD-----HWKDRYLPDTLLLEKCGLLRKGTVLLADNVI 170 (214)
T ss_dssp CEEEEEEC-----SCGGGHHHHHHHHHHTTCEEEEEEEEESCCC
T ss_pred ccceeeec-----ccccccccHHHHHHHhCccCCCcEEEEeCcC
Confidence 79999764 12222222 344556789999999987643
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=5e-07 Score=87.34 Aligned_cols=108 Identities=14% Similarity=0.057 Sum_probs=84.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-------APE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-------~p~ 413 (626)
+.++||++|||+|.-+.+++++... +.+|+++|.++... .+++.....+..++ |+++.+|..+.- .++
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~---~g~i~tie~~~~~~~~A~~~~~~ag~~~~-i~~~~Gda~e~l~~~~~~~~~~ 134 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPA---DGRVVTCEVDAQPPELGRPLWRQAEAEHK-IDLRLKPALETLDELLAAGEAG 134 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCT---TCEEEEEESCSHHHHHHHHHHHHTTCTTT-EEEEESCHHHHHHHHHHTTCTT
T ss_pred CCCeEEEEechhhHHHHHHHHhCCC---CceEEEEeechhHHHHHHHHHHhcCccce-EEEEEeehhhcchhhhhhcccC
Confidence 4579999999999988766555432 35999999998655 88899889999998 999999986642 246
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeE
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYI 458 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~ 458 (626)
+||+|+.+ .+.+.....++.+.+.|+|||++|-+.+-...
T Consensus 135 ~fD~ifiD-----~dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G 174 (219)
T d2avda1 135 TFDVAVVD-----ADKENCSAYYERCLQLLRPGGILAVLRVLWRG 174 (219)
T ss_dssp CEEEEEEC-----SCSTTHHHHHHHHHHHEEEEEEEEEECCSGGG
T ss_pred CccEEEEe-----CCHHHHHHHHHHHHHHhcCCcEEEEeCCcccC
Confidence 89999763 23444577888889999999999987765543
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.42 E-value=2e-07 Score=93.27 Aligned_cols=110 Identities=17% Similarity=0.209 Sum_probs=76.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--------c-CCCCCcEEEEEeccccc-C
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--------E-QWAQSDVTIVSEDMRTW-N 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--------n-~~~~~nV~vi~~D~~~~-~ 410 (626)
+.++||.+|+|.|.....+ .+ .+. .+|++||++|..+ ++++.... . .-..+ ++++.+|.+++ .
T Consensus 72 ~p~~vLiiG~G~G~~~~~~---l~-~~~-~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~r-v~i~~~Da~~~l~ 145 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREV---LQ-HDV-DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEK-AKLTIGDGFEFIK 145 (276)
T ss_dssp CCCEEEEEECTTSHHHHHH---TT-SCC-SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSS-EEEEESCHHHHHH
T ss_pred CCceEEEecCCchHHHHHH---HH-hCC-ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCC-ceEEEChHHHHHh
Confidence 4578999999999887532 33 233 4899999999887 55543311 1 12345 99999999876 2
Q ss_pred CCCCccEEEeccccccCCCCC--cHHHHHHHHHhcccCcEEEeccceee
Q psy17734 411 APEKADIMVSELLGSFGDNEL--SPECLYAAQKYLKEDGISIPYNYTSY 457 (626)
Q Consensus 411 ~p~k~DiIVSEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP~~~t~y 457 (626)
..+++|+||.++....+.... ..++++.+.+.|+|||+++-+....+
T Consensus 146 ~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~ 194 (276)
T d1mjfa_ 146 NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVY 194 (276)
T ss_dssp HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred ccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcc
Confidence 347899999988754433222 37899999999999999986654333
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.42 E-value=3.6e-07 Score=92.20 Aligned_cols=109 Identities=18% Similarity=0.255 Sum_probs=76.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--cCCCCCcEEEEEecccccC--CCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--EQWAQSDVTIVSEDMRTWN--APEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--n~~~~~nV~vi~~D~~~~~--~p~k~D 416 (626)
..++||.||.|.|..... +.+..+. .+|++||++|..+ ++++.... ..+.+.+++++.+|.+++- .++++|
T Consensus 89 ~pk~VLiiGgG~G~~~r~---~l~~~~~-~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 164 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLRE---VLKHDSV-EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFD 164 (295)
T ss_dssp SCCEEEEEECTTCHHHHH---HTTSTTC-SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEE
T ss_pred CCceEEEecCCchHHHHH---HHhcCCC-ceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCC
Confidence 357999999999988753 3333222 4999999999877 66554432 3344445999999998863 347899
Q ss_pred EEEecccccc-CC-CCC-cHHHHHHHHHhcccCcEEEeccc
Q psy17734 417 IMVSELLGSF-GD-NEL-SPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 417 iIVSEllgsf-g~-~El-~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+||.++.... +. ..+ ..++++.+.+.|+|||+++-+..
T Consensus 165 vIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 165 VIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 9999886543 22 223 48899999999999999986654
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=6.2e-07 Score=90.06 Aligned_cols=109 Identities=17% Similarity=0.255 Sum_probs=76.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--cCCCCCcEEEEEecccccC--CCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--EQWAQSDVTIVSEDMRTWN--APEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--n~~~~~nV~vi~~D~~~~~--~p~k~D 416 (626)
..++||.+|.|.|..+..+ .+..+. .+|+.||.+|..+ ++++.... ..+.+.+++++.+|.+++- .++++|
T Consensus 78 ~pk~vLiiGgG~G~~~~~~---l~~~~~-~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREV---VKHPSV-ESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFD 153 (285)
T ss_dssp SCCEEEEEECTTSHHHHHH---TTCTTC-CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEE
T ss_pred CcCeEEEeCCCchHHHHHH---HHcCCc-ceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCC
Confidence 3578999999999987543 333233 5999999999877 66665432 2344435999999998863 457899
Q ss_pred EEEeccccccCCCCC--cHHHHHHHHHhcccCcEEEeccc
Q psy17734 417 IMVSELLGSFGDNEL--SPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 417 iIVSEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+||+++....+.... ..|+++.+.+.|+|||+++-+..
T Consensus 154 vIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 193 (285)
T d2o07a1 154 VIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 193 (285)
T ss_dssp EEEEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEecc
Confidence 999998765443333 36789999999999999987643
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.35 E-value=5.8e-07 Score=87.36 Aligned_cols=107 Identities=15% Similarity=0.059 Sum_probs=85.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--------CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--------AP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--------~p 412 (626)
+.++||++|+|+|.-+++++++.... .+|+++|.++... .|++..++.|+.++ |+++.+|..+.- ..
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~---g~v~tie~~~~~~~~A~~~~~~~g~~~~-i~~~~g~a~~~L~~l~~~~~~~ 134 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPED---GKILAMDINKENYELGLPVIKKAGVDHK-IDFREGPALPVLDEMIKDEKNH 134 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTT---CEEEEEESCCHHHHHHHHHHHHTTCGGG-EEEEESCHHHHHHHHHHCGGGT
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCC---cEEEEEeccchhHHHHHHHHHHhccccc-eeeeehHHHHHHHHHHhccccC
Confidence 34789999999999988766665432 5999999998655 88889999999988 999999997652 13
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceee
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSY 457 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y 457 (626)
++||+|+.+- +.+..++.++.+.++|+|||++|-+.+-..
T Consensus 135 ~~fD~iFiDa-----~k~~y~~~~e~~~~ll~~gGiii~DNvl~~ 174 (227)
T d1susa1 135 GSYDFIFVDA-----DKDNYLNYHKRLIDLVKVGGVIGYDNTLWN 174 (227)
T ss_dssp TCBSEEEECS-----CSTTHHHHHHHHHHHBCTTCCEEEETTTGG
T ss_pred CceeEEEecc-----chhhhHHHHHHHHhhcCCCcEEEEccCCCC
Confidence 5899998742 344457889999999999999998876443
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.30 E-value=4.4e-07 Score=92.12 Aligned_cols=111 Identities=16% Similarity=0.244 Sum_probs=75.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--cCCCCCcEEEEEecccccC--CCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--EQWAQSDVTIVSEDMRTWN--APEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--n~~~~~nV~vi~~D~~~~~--~p~k~D 416 (626)
..++||.+|.|.|..+..+ .+..+. .+|+.||+++..+ .+++.... ..+.+.+++++.+|.+++- ..++||
T Consensus 106 ~pk~VLIiGgG~G~~~rel---lk~~~v-~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yD 181 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREV---LKHESV-EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFD 181 (312)
T ss_dssp SCCEEEEESCTTSHHHHHH---TTCTTC-CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEE
T ss_pred CCCeEEEeCCCchHHHHHH---HHcCCc-ceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCC
Confidence 3578999999999998543 332222 4999999999887 55554422 2244445999999998863 357899
Q ss_pred EEEeccccccCCCCC--cHHHHHHHHHhcccCcEEEecccee
Q psy17734 417 IMVSELLGSFGDNEL--SPECLYAAQKYLKEDGISIPYNYTS 456 (626)
Q Consensus 417 iIVSEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP~~~t~ 456 (626)
+||.++....+.... ..++++.+.+.|+|||+++-+....
T Consensus 182 vII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~ 223 (312)
T d2b2ca1 182 VIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV 223 (312)
T ss_dssp EEEECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred EEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence 999988655444433 3778999999999999999775533
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=2.3e-07 Score=91.80 Aligned_cols=106 Identities=18% Similarity=0.163 Sum_probs=65.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcC----CC--------------------
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQ----WA-------------------- 395 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~----~~-------------------- 395 (626)
.++.+|||+|||+|.++. +.+.+ .. .+|+|+|.++.++ .+++.++... |.
T Consensus 53 ~~g~~vLDiGcG~g~~~~--~~~~~-~~--~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 127 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQL--LSACS-HF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKE 127 (263)
T ss_dssp SCCSEEEEETCTTCCGGG--TTGGG-GC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHH
T ss_pred CCCcEEEEeccCCCHHHH--HHhcc-cC--CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhH
Confidence 367899999999998863 23333 23 3899999999887 4444332211 10
Q ss_pred ----CCcEEEEEecccccC-------CCCCccEEEeccc-cccC-CCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 396 ----QSDVTIVSEDMRTWN-------APEKADIMVSELL-GSFG-DNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 396 ----~~nV~vi~~D~~~~~-------~p~k~DiIVSEll-gsfg-~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
...-.++.+|+.+-. .+.+||+|++-.. .+.. +.+.+..++..+.++|||||.+|-
T Consensus 128 ~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~ 196 (263)
T d2g72a1 128 RQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLL 196 (263)
T ss_dssp HHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred HHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 011234556664321 1257999998443 2222 223356688899999999999874
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.27 E-value=1.5e-06 Score=87.39 Aligned_cols=110 Identities=15% Similarity=0.230 Sum_probs=79.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHH--HcCCCCCcEEEEEecccccC--CC-CCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKK--EEQWAQSDVTIVSEDMRTWN--AP-EKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~--~n~~~~~nV~vi~~D~~~~~--~p-~k~ 415 (626)
+.++||.+|.|.|.....+ .+..+. .+|++||+++..+ ++++... ...+.+.+++++.+|.+++- .+ +++
T Consensus 80 ~pk~VLiiGgG~G~~~r~~---l~~~~~-~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~y 155 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREV---ARHASI-EQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSY 155 (290)
T ss_dssp CCCEEEEETCSSSHHHHHH---TTCTTC-CEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCE
T ss_pred CCcceEEecCCchHHHHHH---Hhcccc-eeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCc
Confidence 3578999999999998533 332232 4899999999887 5555432 22333335999999988753 33 589
Q ss_pred cEEEeccccccCCCCC--cHHHHHHHHHhcccCcEEEeccce
Q psy17734 416 DIMVSELLGSFGDNEL--SPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 416 DiIVSEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
|+||.++....+.... ..++++.+.+.|+|||+++-+...
T Consensus 156 DvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 197 (290)
T d1xj5a_ 156 DAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 197 (290)
T ss_dssp EEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred cEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 9999988754443322 378999999999999999977654
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.15 E-value=2.5e-06 Score=83.24 Aligned_cols=75 Identities=13% Similarity=0.222 Sum_probs=56.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCC-CccEEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPE-KADIMV 419 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~-k~DiIV 419 (626)
.++.+||+||||+|.|+..++..+ .+|+|||+++.....++... .+. + |++++++|+.+++.++ +...||
T Consensus 20 ~~~d~VlEIGpG~G~LT~~Ll~~~------~~v~avE~D~~l~~~l~~~~-~~~-~-n~~i~~~D~l~~~~~~~~~~~vv 90 (235)
T d1qama_ 20 NEHDNIFEIGSGKGHFTLELVQRC------NFVTAIEIDHKLCKTTENKL-VDH-D-NFQVLNKDILQFKFPKNQSYKIF 90 (235)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS------SEEEEECSCHHHHHHHHHHT-TTC-C-SEEEECCCGGGCCCCSSCCCEEE
T ss_pred CCCCeEEEECCCchHHHHHHHhCc------CceEEEeeccchHHHHHHHh-hcc-c-chhhhhhhhhhccccccccceee
Confidence 367899999999999998766543 39999999998875555432 222 2 6999999999988763 345688
Q ss_pred ecccc
Q psy17734 420 SELLG 424 (626)
Q Consensus 420 SEllg 424 (626)
+++.-
T Consensus 91 ~NLPY 95 (235)
T d1qama_ 91 GNIPY 95 (235)
T ss_dssp EECCG
T ss_pred eeehh
Confidence 98864
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=7.5e-06 Score=78.19 Aligned_cols=101 Identities=12% Similarity=0.052 Sum_probs=76.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH-HHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL-KYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~-~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
+..|+|+|+|.|.=+.-++-+. .+.+|+.||.+..-+..+ +.+..-++. ||++++++.+++....+||+|+|-
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~----p~~~~~Lves~~KK~~FL~~~~~~L~L~--nv~v~~~R~E~~~~~~~fD~V~sR 139 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVR----PEAHFTLLDSLGKRVRFLRQVQHELKLE--NIEPVQSRVEEFPSEPPFDGVISR 139 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHC----TTSEEEEEESCHHHHHHHHHHHHHTTCS--SEEEEECCTTTSCCCSCEEEEECS
T ss_pred CCceeeeeccCCceeeehhhhc----ccceEEEEecchHHHHHHHHHHHHcCCc--ceeeeccchhhhccccccceehhh
Confidence 4589999999998886433222 236999999998666444 445556775 699999999998776789999995
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEEeccce
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
-++ ..+.++.-+.++++++|.++...+.
T Consensus 140 A~~------~~~~ll~~~~~~l~~~g~~~~~KG~ 167 (207)
T d1jsxa_ 140 AFA------SLNDMVSWCHHLPGEQGRFYALKGQ 167 (207)
T ss_dssp CSS------SHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred hhc------CHHHHHHHHHHhcCCCcEEEEECCC
Confidence 443 2466778888899999998877653
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.01 E-value=6e-06 Score=80.83 Aligned_cols=132 Identities=17% Similarity=0.209 Sum_probs=80.5
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHh---hccCCCcC-CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH
Q psy17734 308 TYEVFEKDPIKYIRYQEAVQQALL---DRVSPEQA-DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV 383 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI~~al~---d~~~~~~~-~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~ 383 (626)
.|+.+.+|+.+-+.|.+++...-. +.+.+..+ ..+..+|+|||||+|.++..++++-. ..+++..|..+.
T Consensus 43 ~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P----~l~~~v~Dlp~v-- 116 (244)
T d1fp1d2 43 KYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYP----LIKGINFDLPQV-- 116 (244)
T ss_dssp ---CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEECHHH--
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCC----CCeEEEecchhh--
Confidence 466667787777777766643111 11111111 12457899999999999875444332 368999997432
Q ss_pred HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe-ccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 384 VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS-ELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 384 ~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS-Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+...+-.++ |+++.+|+.+- .| ..|+++. ..+..+. .|....+|..+.+.|+|||.++-...
T Consensus 117 -----i~~~~~~~r-i~~~~gd~~~~-~p-~~D~~~l~~vLh~~~-de~~~~iL~~~~~aL~pgg~llI~e~ 179 (244)
T d1fp1d2 117 -----IENAPPLSG-IEHVGGDMFAS-VP-QGDAMILKAVCHNWS-DEKCIEFLSNCHKALSPNGKVIIVEF 179 (244)
T ss_dssp -----HTTCCCCTT-EEEEECCTTTC-CC-CEEEEEEESSGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -----hhccCCCCC-eEEecCCcccc-cc-cceEEEEehhhhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 123334566 99999999764 33 4588755 3444332 23345678888899999998776544
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.00 E-value=7.5e-06 Score=82.99 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=73.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhh-cCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKE-ANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~-~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIV 419 (626)
++.+|+|.|||+|.+...++..... .....+++|+|+++.+. .|+.+....+. ++.+.++|........+||+||
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~~~~~fD~vi 193 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ---KMTLLHQDGLANLLVDPVDVVI 193 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC---CCEEEESCTTSCCCCCCEEEEE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh---hhhhhccccccccccccccccc
Confidence 4578999999999998665543322 22345899999999877 56555554544 3788888877666668999999
Q ss_pred ecccc-ccCC-------------CCC-cH-HHHHHHHHhcccCcE---EEecc
Q psy17734 420 SELLG-SFGD-------------NEL-SP-ECLYAAQKYLKEDGI---SIPYN 453 (626)
Q Consensus 420 SEllg-sfg~-------------~El-~p-e~L~~~~r~LkpgGi---~IP~~ 453 (626)
+++.- .... +.. +. -++..+.+.|+|||. ++|++
T Consensus 194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~ 246 (328)
T d2f8la1 194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 246 (328)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence 99862 1110 000 11 146677889999985 45654
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=3.6e-05 Score=78.68 Aligned_cols=87 Identities=16% Similarity=0.111 Sum_probs=66.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-----CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-----PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-----p~k~ 415 (626)
++.+|||+.||+|.+++.+ +++. .+|+|||.++.++ .|+++.+.|+.. |++++.+|.++.-. ..++
T Consensus 212 ~~~~vlDLycG~G~fsl~L---a~~~---~~V~gvE~~~~ai~~A~~na~~n~i~--n~~~~~~~~~~~~~~~~~~~~~~ 283 (358)
T d1uwva2 212 PEDRVLDLFCGMGNFTLPL---ATQA---ASVVGVEGVPALVEKGQQNARLNGLQ--NVTFYHENLEEDVTKQPWAKNGF 283 (358)
T ss_dssp TTCEEEEESCTTTTTHHHH---HTTS---SEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEECCTTSCCSSSGGGTTCC
T ss_pred CCceEEEecccccccchhc---cccc---cEEEeccCcHHHHHHHHHhHHhcccc--cceeeecchhhhhhhhhhhhccC
Confidence 5678999999999999643 3322 3999999999988 678888889987 79999999987532 2578
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHH
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQK 441 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r 441 (626)
|+||-++.-.. +.+.+..+.+
T Consensus 284 d~vilDPPR~G-----~~~~~~~l~~ 304 (358)
T d1uwva2 284 DKVLLDPARAG-----AAGVMQQIIK 304 (358)
T ss_dssp SEEEECCCTTC-----CHHHHHHHHH
T ss_pred ceEEeCCCCcc-----HHHHHHHHHH
Confidence 99999887532 3445555543
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.96 E-value=4.9e-06 Score=78.61 Aligned_cols=101 Identities=22% Similarity=0.276 Sum_probs=72.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA------PEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~------p~k 414 (626)
++.+++|++||+|..+...+.+.. + .+|+|+|.++.|+ .+.+..+. ++++ +++++++..++.. .++
T Consensus 23 ~~~~~lD~t~G~Gghs~~il~~~~--~--~~vi~~D~d~~~l~~a~~~l~~--~~~r-~~~~~~~f~~~~~~~~~~~~~~ 95 (192)
T d1m6ya2 23 DEKIILDCTVGEGGHSRAILEHCP--G--CRIIGIDVDSEVLRIAEEKLKE--FSDR-VSLFKVSYREADFLLKTLGIEK 95 (192)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCT--T--CEEEEEESCHHHHHHHHHHTGG--GTTT-EEEEECCGGGHHHHHHHTTCSC
T ss_pred CCCEEEEecCCCcHHHHHHHhcCC--C--CeEEEeechHHHHHHHHHhhcc--cccc-ccchhHHHhhHHHHHHHcCCCC
Confidence 677999999999999986665542 2 5999999999888 44444433 4556 9999999887631 278
Q ss_pred ccEEEeccccc------cCCCCC--cHHHHHHHHHhcccCcEEE
Q psy17734 415 ADIMVSELLGS------FGDNEL--SPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 415 ~DiIVSEllgs------fg~~El--~pe~L~~~~r~LkpgGi~I 450 (626)
+|-|+-++ |. ....|. ..+.|+.+.+.|+|||.++
T Consensus 96 vdgIl~Dl-GvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ 138 (192)
T d1m6ya2 96 VDGILMDL-GVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIV 138 (192)
T ss_dssp EEEEEEEC-SCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEE
T ss_pred cceeeecc-chhHhhhhhhhccchhHHHHHHHHHHhcCCCCeee
Confidence 99998764 21 001122 2567888889999999876
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.91 E-value=9.6e-06 Score=76.38 Aligned_cols=112 Identities=15% Similarity=0.137 Sum_probs=69.2
Q ss_pred CCCEEEEEcCCCch----HHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHH--------------HH----cCCCCC-
Q psy17734 342 VVTTIMVVGAGRGP----LVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYK--------------KE----EQWAQS- 397 (626)
Q Consensus 342 ~~~~VLDvG~GtG~----Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~--------------~~----n~~~~~- 397 (626)
+..+|+++|||||- +++.+..+....+.+.+|+|.|.++.++ .|++-. .+ .+....
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 45789999999995 5555555544344457899999999877 333211 00 111111
Q ss_pred ----------cEEEEEecccccC--CCCCccEEEe-ccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 398 ----------DVTIVSEDMRTWN--APEKADIMVS-ELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 398 ----------nV~vi~~D~~~~~--~p~k~DiIVS-Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
.|++...+..+.. ..+++|+|+| ++|.+| +.+...++++...+.|+|||.++--..
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf-~~~~~~~vl~~l~~~L~pGG~L~lG~s 172 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLFAGHS 172 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhc-CHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 1233333333222 2368999999 555543 444456788889999999999876544
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=1.6e-05 Score=79.27 Aligned_cols=75 Identities=23% Similarity=0.267 Sum_probs=57.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHc-CCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEE-QWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n-~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+||+||+|+|.|+..+++.+ .+|+|||+++.....++....+ ...+ |++++++|+.+++.+ ..+.||+
T Consensus 21 ~~d~VlEIGPG~G~LT~~Ll~~~------~~v~aiE~D~~l~~~L~~~~~~~~~~~-~~~~i~~D~l~~~~~-~~~~vV~ 92 (278)
T d1zq9a1 21 PTDVVLEVGPGTGNMTVKLLEKA------KKVVACELDPRLVAELHKRVQGTPVAS-KLQVLVGDVLKTDLP-FFDTCVA 92 (278)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHS------SEEEEEESCHHHHHHHHHHHTTSTTGG-GEEEEESCTTTSCCC-CCSEEEE
T ss_pred CCCEEEEECCCchHHHHHHHhcC------CcEEEEEEccchhHHHHHHHhhhcccc-chhhhHHHHhhhhhh-hhhhhhc
Confidence 56799999999999998765543 3999999999888655544333 3334 599999999998875 4578999
Q ss_pred cccc
Q psy17734 421 ELLG 424 (626)
Q Consensus 421 Ellg 424 (626)
++.-
T Consensus 93 NLPY 96 (278)
T d1zq9a1 93 NLPY 96 (278)
T ss_dssp ECCG
T ss_pred chHH
Confidence 8863
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.83 E-value=2.8e-05 Score=80.58 Aligned_cols=100 Identities=15% Similarity=0.029 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCC-------------cEEEEEeccc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQS-------------DVTIVSEDMR 407 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~-------------nV~vi~~D~~ 407 (626)
++.+|||..||+|..+ +++++..|. .+|+++|+|+.|+ .++++++.|+..+. ++++.+.|..
T Consensus 45 ~~~~vLD~~sasG~rs---iRya~E~~~-~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~ 120 (375)
T d2dula1 45 NPKIVLDALSATGIRG---IRFALETPA-EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDAN 120 (375)
T ss_dssp CCSEEEESSCTTSHHH---HHHHHHSSC-SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHH
T ss_pred CCCEEEEcCCCccHHH---HHHHHhCCC-CEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhh
Confidence 3578999999999999 456665665 4999999999988 77888888876431 2667777765
Q ss_pred ccC--CCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 408 TWN--APEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 408 ~~~--~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
.+- ..++||+|.-++.|+ .-.+|+++-+.++.||++.-
T Consensus 121 ~~~~~~~~~fDvIDiDPfGs------~~pfldsAi~a~~~~Gll~v 160 (375)
T d2dula1 121 RLMAERHRYFHFIDLDPFGS------PMEFLDTALRSAKRRGILGV 160 (375)
T ss_dssp HHHHHSTTCEEEEEECCSSC------CHHHHHHHHHHEEEEEEEEE
T ss_pred hhhHhhcCcCCcccCCCCCC------cHHHHHHHHHHhccCCEEEE
Confidence 442 246799999988652 34589999999999998653
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.75 E-value=4.1e-05 Score=74.62 Aligned_cols=125 Identities=16% Similarity=0.207 Sum_probs=75.5
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHH---hhccCCCc-CCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH
Q psy17734 308 TYEVFEKDPIKYIRYQEAVQQAL---LDRVSPEQ-ADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV 383 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI~~al---~d~~~~~~-~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~ 383 (626)
.|+.+.+|+.+.+.|.+++...- ...+.+.. ...+..+|+|||||+|.++..++++-. ..+++..|..+.
T Consensus 42 ~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P----~l~~~v~Dlp~v-- 115 (244)
T d1fp2a2 42 FWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFP----KLKCIVFDRPQV-- 115 (244)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCT----TCEEEEEECHHH--
T ss_pred HHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhcccccCceEEEEecCCccHHHHHHHHhCC----CCeEEEecCHHH--
Confidence 45666667776666666653211 00000000 112346899999999999865443322 259999998432
Q ss_pred HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe-ccccccCCCCCcHHHHHHHHHhcccCc
Q psy17734 384 VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS-ELLGSFGDNELSPECLYAAQKYLKEDG 447 (626)
Q Consensus 384 ~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS-Ellgsfg~~El~pe~L~~~~r~LkpgG 447 (626)
+...+..++ |+++.+|+.+- . ..+|+++. ..+..+ ..|....+|..+.+.|+|||
T Consensus 116 -----i~~~~~~~r-v~~~~gD~f~~-~-p~aD~~~l~~vLHdw-~d~~~~~iL~~~~~al~pgg 171 (244)
T d1fp2a2 116 -----VENLSGSNN-LTYVGGDMFTS-I-PNADAVLLKYILHNW-TDKDCLRILKKCKEAVTNDG 171 (244)
T ss_dssp -----HTTCCCBTT-EEEEECCTTTC-C-CCCSEEEEESCGGGS-CHHHHHHHHHHHHHHHSGGG
T ss_pred -----HHhCcccCc-eEEEecCcccC-C-CCCcEEEEEeecccC-ChHHHHHHHHHHHHHcCccc
Confidence 122344566 99999999763 2 36899765 334333 22333557888889999983
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.74 E-value=4.4e-05 Score=74.24 Aligned_cols=130 Identities=15% Similarity=0.199 Sum_probs=78.4
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHh---hccCCCcC-CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH
Q psy17734 308 TYEVFEKDPIKYIRYQEAVQQALL---DRVSPEQA-DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV 383 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI~~al~---d~~~~~~~-~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~ 383 (626)
.|+.+.+|+.+.+.|.+++...-. +.+.+... ..+..+|+|||||+|.++..++++-. +.+++.+|..+..
T Consensus 43 ~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P----~l~~~v~Dlp~vi- 117 (243)
T d1kyza2 43 AFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYP----TIKGINFDLPHVI- 117 (243)
T ss_dssp HHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCT----TSEEEEEECTTTT-
T ss_pred HHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCC----CCeEEEcccHHhh-
Confidence 477778888877777776653211 10100011 12346899999999999976554332 2699999986532
Q ss_pred HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEE-eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 384 VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMV-SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 384 ~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIV-SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
....-.++ ++++.+|+.+- .|. .|..+ +-.+..+.+ +....+|..+.+.|+|||.++-.
T Consensus 118 ------~~~~~~~r-~~~~~~d~~~~-~P~-ad~~~l~~vlh~~~d-~~~~~iL~~~~~al~pgg~~li~ 177 (243)
T d1kyza2 118 ------EDAPSYPG-VEHVGGDMFVS-IPK-ADAVFMKWICHDWSD-EHCLKFLKNCYEALPDNGKVIVA 177 (243)
T ss_dssp ------TTCCCCTT-EEEEECCTTTC-CCC-CSCEECSSSSTTSCH-HHHHHHHHHHHHHCCSSSCEEEE
T ss_pred ------hhcccCCc-eEEeccccccc-CCC-cceEEEEEEeecCCH-HHHHHHHHHHHHhcCCCceEEEE
Confidence 12233455 99999999763 333 45443 333332211 22345788888999999965533
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.73 E-value=1.4e-06 Score=85.61 Aligned_cols=73 Identities=19% Similarity=0.281 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVS 420 (626)
++.+||+||||+|.|+..++..+ .+|+|||+++.+...++... .. ..|++++++|+.+++.+ ...+.||+
T Consensus 29 ~~d~VLEIGpG~G~LT~~L~~~~------~~v~aIE~D~~l~~~l~~~~-~~--~~n~~ii~~D~l~~~~~~~~~~~vv~ 99 (245)
T d1yuba_ 29 ETDTVYEIGTGKGHLTTKLAKIS------KQVTSIELDSHLFNLSSEKL-KL--NTRVTLIHQDILQFQFPNKQRYKIVG 99 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHS------SEEEESSSSCSSSSSSSCTT-TT--CSEEEECCSCCTTTTCCCSSEEEEEE
T ss_pred CCCeEEEECCCccHHHHHHHhhc------CceeEeeecccchhhhhhhh-hh--ccchhhhhhhhhccccccceeeeEee
Confidence 56789999999999997655543 39999999987653332211 11 12699999999999876 46677999
Q ss_pred ccc
Q psy17734 421 ELL 423 (626)
Q Consensus 421 Ell 423 (626)
++.
T Consensus 100 NLP 102 (245)
T d1yuba_ 100 NIP 102 (245)
T ss_dssp ECC
T ss_pred eee
Confidence 886
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.68 E-value=0.00013 Score=68.60 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=51.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
++.+|||.|||+|.+...+... .....+++|+|.++.+. ..... ..++++|........++|+++++
T Consensus 19 ~~~~IlDp~~G~G~fl~~~~~~---~~~~~~i~g~ei~~~~~---------~~~~~-~~~~~~~~~~~~~~~~fd~ii~n 85 (223)
T d2ih2a1 19 RGGRVLEPACAHGPFLRAFREA---HGTAYRFVGVEIDPKAL---------DLPPW-AEGILADFLLWEPGEAFDLILGN 85 (223)
T ss_dssp TTCEEEEETCTTCHHHHHHHHH---HCSCSEEEEEESCTTTC---------CCCTT-EEEEESCGGGCCCSSCEEEEEEC
T ss_pred CcCEEEECCCchHHHHHHHHHh---ccccceEEeeecCHHHH---------hhccc-ceeeeeehhccccccccceeccc
Confidence 5679999999999987543332 22235899999998543 22233 78899999888777899999998
Q ss_pred cc
Q psy17734 422 LL 423 (626)
Q Consensus 422 ll 423 (626)
+.
T Consensus 86 pP 87 (223)
T d2ih2a1 86 PP 87 (223)
T ss_dssp CC
T ss_pred Cc
Confidence 75
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.66 E-value=3.5e-05 Score=71.79 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=67.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC---------CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN---------AP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~---------~p 412 (626)
++.+|||+||+.|.++..+... .+...+|+|+|..++ .... ++.++++|..+.. ..
T Consensus 22 ~~~~vlDLg~aPGgw~q~~~~~---~~~~~~v~~vDl~~~----------~~i~--~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T d1ej0a_ 22 PGMTVVDLGAAPGGWSQYVVTQ---IGGKGRIIACDLLPM----------DPIV--GVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHH---HCTTCEEEEEESSCC----------CCCT--TEEEEESCTTSHHHHHHHHHHHTT
T ss_pred CCCeEEEEeccCCcceEEEEee---ccccceEEEeecccc----------cccC--CceEeecccccchhhhhhhhhccC
Confidence 5679999999999999755443 333359999998872 1222 5999999987643 23
Q ss_pred CCccEEEeccccccCCCCCcH---------HHHHHHHHhcccCcEEEec
Q psy17734 413 EKADIMVSELLGSFGDNELSP---------ECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~p---------e~L~~~~r~LkpgGi~IP~ 452 (626)
.++|+|+|+.....-.+.... ..+.-+.++||+||.+|--
T Consensus 87 ~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K 135 (180)
T d1ej0a_ 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK 135 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEE
Confidence 689999998754443332222 2345567899999998854
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.61 E-value=9.8e-05 Score=71.69 Aligned_cols=102 Identities=20% Similarity=0.183 Sum_probs=75.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHH-HHHHcCCCCCcEEEEEecccccCC----CCCccE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLK-YKKEEQWAQSDVTIVSEDMRTWNA----PEKADI 417 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~-~~~~n~~~~~nV~vi~~D~~~~~~----p~k~Di 417 (626)
..+|+|+|+|-|.-+.-++-+- . +.+|+-||.+..-...++ .+..-++. |+++++++++++.. .++||+
T Consensus 71 ~~~ilDiGSGaGfPGi~laI~~--p--~~~v~Lves~~KK~~FL~~v~~~L~L~--n~~i~~~R~E~~~~~~~~~~~~D~ 144 (239)
T d1xdza_ 71 VNTICDVGAGAGFPSLPIKICF--P--HLHVTIVDSLNKRITFLEKLSEALQLE--NTTFCHDRAETFGQRKDVRESYDI 144 (239)
T ss_dssp CCEEEEECSSSCTTHHHHHHHC--T--TCEEEEEESCHHHHHHHHHHHHHHTCS--SEEEEESCHHHHTTCTTTTTCEEE
T ss_pred CCeEEeecCCCchHHHHHHHhC--C--CccceeecchHHHHHHHHHHHHHhCCC--CcEEEeehhhhccccccccccceE
Confidence 4689999999998886433322 2 269999999986554444 44556776 79999999988743 368999
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEEecccee
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTS 456 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~ 456 (626)
|+|--+. ..+.++.-...++++||.++...+..
T Consensus 145 v~sRAva------~l~~ll~~~~~~l~~~g~~i~~KG~~ 177 (239)
T d1xdza_ 145 VTARAVA------RLSVLSELCLPLVKKNGLFVALKAAS 177 (239)
T ss_dssp EEEECCS------CHHHHHHHHGGGEEEEEEEEEEECC-
T ss_pred EEEhhhh------CHHHHHHHHhhhcccCCEEEEECCCC
Confidence 9995443 24677888889999999998766654
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.24 E-value=6.6e-05 Score=73.54 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC------CCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP------EKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p------~k~ 415 (626)
++..||+||||+|.|+..+++. + .+|+|||+++.....++..... .+ |++++++|+.++..+ .+.
T Consensus 21 ~~d~vlEIGpG~G~LT~~Ll~~----~--~~v~aiEiD~~l~~~L~~~~~~--~~-~~~ii~~D~l~~~~~~~~~~~~~~ 91 (252)
T d1qyra_ 21 KGQAMVEIGPGLAALTEPVGER----L--DQLTVIELDRDLAARLQTHPFL--GP-KLTIYQQDAMTFNFGELAEKMGQP 91 (252)
T ss_dssp TTCCEEEECCTTTTTHHHHHTT----C--SCEEEECCCHHHHHHHHTCTTT--GG-GEEEECSCGGGCCHHHHHHHHTSC
T ss_pred CCCEEEEECCCchHHHHHHHcc----C--CceEEEEeccchhHHHHHHhhh--cc-chhHHhhhhhhhcccccccccCCC
Confidence 5678999999999999754432 2 3999999999887655542111 23 599999999988653 233
Q ss_pred cEEEecccc
Q psy17734 416 DIMVSELLG 424 (626)
Q Consensus 416 DiIVSEllg 424 (626)
-.||+++.-
T Consensus 92 ~~vvgNlPY 100 (252)
T d1qyra_ 92 LRVFGNLPY 100 (252)
T ss_dssp EEEEEECCT
T ss_pred eEEEecchH
Confidence 467887753
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.20 E-value=0.00056 Score=71.51 Aligned_cols=111 Identities=14% Similarity=0.094 Sum_probs=76.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCC---------ccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANR---------KVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~---------~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~ 411 (626)
.+.+|+|-.||+|.+...+++..+..+. ...++|+|+++.+. ++..++.-.+....+..+..+|..+...
T Consensus 162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~~ 241 (425)
T d2okca1 162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP 241 (425)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhhc
Confidence 4578999999999998766665543221 12599999999776 6666666666654447788899887766
Q ss_pred CCCccEEEeccccccCC-CC------------C-c-HHHHHHHHHhcccCcE---EEec
Q psy17734 412 PEKADIMVSELLGSFGD-NE------------L-S-PECLYAAQKYLKEDGI---SIPY 452 (626)
Q Consensus 412 p~k~DiIVSEllgsfg~-~E------------l-~-pe~L~~~~r~LkpgGi---~IP~ 452 (626)
..+||+||+++.-.... .+ . . ..++..+.+.|++||. ++|.
T Consensus 242 ~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~ 300 (425)
T d2okca1 242 STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 300 (425)
T ss_dssp SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence 68999999998631110 00 0 0 1266777889999985 4554
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.13 E-value=0.00079 Score=64.84 Aligned_cols=120 Identities=14% Similarity=0.143 Sum_probs=73.0
Q ss_pred hhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHH
Q psy17734 312 FEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKE 391 (626)
Q Consensus 312 fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~ 391 (626)
+.+.|.-...|++.|.+. +.++||++|+++|.-+.+.+...+..+.+.+|+++|+++..... ..
T Consensus 62 ~~k~p~d~~~~~eli~~~------------KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~----~~ 125 (232)
T d2bm8a1 62 MLKDPDTQAVYHDMLWEL------------RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI----PA 125 (232)
T ss_dssp CCSCHHHHHHHHHHHHHH------------CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCC----CG
T ss_pred cccCHHHHHHHHHHHHHh------------CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhh----hh
Confidence 345566666776666543 35789999999996555444555545555799999998643210 11
Q ss_pred cCCCCCcEEEEEecccccCC-----CCCccEEEeccccccCCCCCcHHHHH-HHHHhcccCcEEEeccc
Q psy17734 392 EQWAQSDVTIVSEDMRTWNA-----PEKADIMVSELLGSFGDNELSPECLY-AAQKYLKEDGISIPYNY 454 (626)
Q Consensus 392 n~~~~~nV~vi~~D~~~~~~-----p~k~DiIVSEllgsfg~~El~pe~L~-~~~r~LkpgGi~IP~~~ 454 (626)
.. .. +|+++.+|..+... ...+|+|+-+- . +..-....+ ...++|++||++|-...
T Consensus 126 ~~-~~-~I~~i~gDs~~~~~~~~l~~~~~dlIfID~---~--H~~~~v~~~~~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 126 SD-ME-NITLHQGDCSDLTTFEHLREMAHPLIFIDN---A--HANTFNIMKWAVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp GG-CT-TEEEEECCSSCSGGGGGGSSSCSSEEEEES---S--CSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred cc-cc-ceeeeecccccHHHHHHHHhcCCCEEEEcC---C--cchHHHHHHHHHhcccCcCCEEEEEcC
Confidence 11 23 49999999876542 13578776431 1 111111111 24478999999887654
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.006 Score=60.35 Aligned_cols=77 Identities=6% Similarity=0.055 Sum_probs=58.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC----CCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP----EKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p----~k~D 416 (626)
++.+|||+.||.|.=+..++... +.+.+|+|+|+++.-. ..++++++.|.. ||.+...|.+.+... ++||
T Consensus 94 ~g~~vLD~cAapGgKt~~la~l~---~~~~~i~a~d~~~~R~~~l~~~l~r~g~~--~~~~~~~d~~~~~~~~~~~~~fD 168 (293)
T d2b9ea1 94 PGSHVIDACAAPGNKTSHLAALL---KNQGKIFAFDLDAKRLASMATLLARAGVS--CCELAEEDFLAVSPSDPRYHEVH 168 (293)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHH---TTCSEEEEEESCHHHHHHHHHHHHHTTCC--SEEEEECCGGGSCTTCGGGTTEE
T ss_pred ccceEEecccchhhHHHHHHHHh---cCCceEeeecCCHHHHHHHHHHHHhcCcc--ceeeeehhhhhhcccccccceee
Confidence 67899999999998775433332 2235999999998755 556677777775 799999999887532 6799
Q ss_pred EEEeccc
Q psy17734 417 IMVSELL 423 (626)
Q Consensus 417 iIVSEll 423 (626)
.|+.+..
T Consensus 169 ~VL~DaP 175 (293)
T d2b9ea1 169 YILLDPS 175 (293)
T ss_dssp EEEECCC
T ss_pred EEeecCc
Confidence 9998865
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.82 E-value=0.0028 Score=63.43 Aligned_cols=118 Identities=11% Similarity=0.041 Sum_probs=79.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIV 419 (626)
++.+|||+.||.|.=+..++.. .+.+..|+|+|.++.-. ...++.++.+.. ||.++..|...+.. ..+||.|+
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~---~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~--~i~~~~~d~~~~~~~~~~fD~IL 190 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQL---MRNDGVIYAFDVDENRLRETRLNLSRLGVL--NVILFHSSSLHIGELNVEFDKIL 190 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHH---TTTCSEEEEECSCHHHHHHHHHHHHHHTCC--SEEEESSCGGGGGGGCCCEEEEE
T ss_pred ccceeeecccchhhhhHhhhhh---cccccceeeeccCHHHHHHHHHHHHHHHhh--ccccccccccccccccccccEEE
Confidence 6789999999999765433333 33336999999998655 555566666765 68888888877653 47899999
Q ss_pred eccccc----cCCC-----CCcH-----------HHHHHHHHhcccCcEEEeccceeeEEeccChHh
Q psy17734 420 SELLGS----FGDN-----ELSP-----------ECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKL 466 (626)
Q Consensus 420 SEllgs----fg~~-----El~p-----------e~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l 466 (626)
.+..-| +.-+ ...+ ++|..+.++|||||.+|=+.+| +.|.+-...
T Consensus 191 vDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS--l~~eENE~V 255 (313)
T d1ixka_ 191 LDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS--LEPEENEFV 255 (313)
T ss_dssp EECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC--CCGGGTHHH
T ss_pred EccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc--CChHhHHHH
Confidence 876422 1111 0111 2556777889999999877666 355665543
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.72 E-value=0.0025 Score=62.95 Aligned_cols=120 Identities=16% Similarity=0.063 Sum_probs=78.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc--CCCCCccE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW--NAPEKADI 417 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~--~~p~k~Di 417 (626)
.++.+|||+.||.|.=+..++..+. +.+|+|+|+++.-. ...+.+++.|.. ++.+...|.... ..+.+||.
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~----~~~i~a~d~~~~R~~~l~~~~~r~g~~--~~~~~~~~~~~~~~~~~~~fd~ 174 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAP----EAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWCGEQQFDR 174 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCT----TCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCTHHHHTTCCEEE
T ss_pred cccceeEeccCccccchhhhhhhhh----hhhhhhhhcchhhhhhHhhhhhccccc--ceeeeccccccchhcccccccE
Confidence 3678999999999988865444322 25999999998544 556666677765 455555554422 24478999
Q ss_pred EEeccc----cccCCCCCc----------------HHHHHHHHHhcccCcEEEeccceeeEEeccChHhHH
Q psy17734 418 MVSELL----GSFGDNELS----------------PECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFT 468 (626)
Q Consensus 418 IVSEll----gsfg~~El~----------------pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l~~ 468 (626)
|+.+.. |.+.-+..+ .++|+.+.++|||||.++=+.+| +.|.|-...-.
T Consensus 175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS--~~~~ENE~vv~ 243 (284)
T d1sqga2 175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS--VLPEENSLQIK 243 (284)
T ss_dssp EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC--CCGGGTHHHHH
T ss_pred EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec--CchhhCHHHHH
Confidence 998764 222211111 13566777789999999976665 45666654433
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.70 E-value=0.0016 Score=60.30 Aligned_cols=97 Identities=23% Similarity=0.253 Sum_probs=68.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC------CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA------PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~------p~k~ 415 (626)
++.+++|+.+|.|..+...+.. + .+|+|+|.+|.|+...+.+ ... ++++++++..++.. .+++
T Consensus 18 ~g~~~vD~T~G~GGhs~~iL~~----~--~~viaiD~D~~ai~~a~~~----~~~-~~~~~~~~f~~~~~~l~~~~~~~v 86 (182)
T d1wg8a2 18 PGGVYVDATLGGAGHARGILER----G--GRVIGLDQDPEAVARAKGL----HLP-GLTVVQGNFRHLKRHLAALGVERV 86 (182)
T ss_dssp TTCEEEETTCTTSHHHHHHHHT----T--CEEEEEESCHHHHHHHHHT----CCT-TEEEEESCGGGHHHHHHHTTCSCE
T ss_pred CCCEEEEeCCCCcHHHHHHhcc----c--CcEEEEhhhhhHHHHHhhc----ccc-ceeEeehHHHHHHHHHHHcCCCcc
Confidence 6789999999999998765542 2 4999999999887443332 233 49999998877641 2689
Q ss_pred cEEEeccccc--cC----CCCC--cHHHHHHHHHhcccCcEEE
Q psy17734 416 DIMVSELLGS--FG----DNEL--SPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 416 DiIVSEllgs--fg----~~El--~pe~L~~~~r~LkpgGi~I 450 (626)
|.|+.++ |. +. ..|. ....|+.+.+.|++||.++
T Consensus 87 dgIl~DL-GvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ 128 (182)
T d1wg8a2 87 DGILADL-GVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLV 128 (182)
T ss_dssp EEEEEEC-SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred CEEEEEc-cCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEE
Confidence 9999876 21 11 1111 1346788889999999865
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.45 E-value=0.00048 Score=66.72 Aligned_cols=103 Identities=16% Similarity=0.124 Sum_probs=57.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
+...|+|+|||+|.++.. |+.+... ..|.|+++--.....-......+|+ . +++...+.-....++++|+|+|+
T Consensus 66 ~~~~vvDlG~~pGgws~~---~a~~~~v-~~V~g~~iG~d~~e~P~~~~~~~~n-i-~~~~~~~dv~~l~~~~~D~vlcD 139 (257)
T d2p41a1 66 PEGKVVDLGCGRGGWSYY---CGGLKNV-REVKGLTKGGPGHEEPIPMSTYGWN-L-VRLQSGVDVFFIPPERCDTLLCD 139 (257)
T ss_dssp CCEEEEEETCTTSHHHHH---HHTSTTE-EEEEEECCCSTTSCCCCCCCSTTGG-G-EEEECSCCTTTSCCCCCSEEEEC
T ss_pred CCCeEEEecCCCChHHHH---HHhhcCC-CceeEEEecCccccCCccccccccc-c-ccchhhhhHHhcCCCcCCEEEee
Confidence 456899999999999953 4432211 3677777621000000011223442 2 56554443333346899999998
Q ss_pred cccccCCCC----CcHHHHHHHHHhcccCcEEE
Q psy17734 422 LLGSFGDNE----LSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 422 llgsfg~~E----l~pe~L~~~~r~LkpgGi~I 450 (626)
+-.+-+..+ ..-.+|+-+.++|+|||-++
T Consensus 140 m~ess~~~~vd~~Rtl~vLela~~wLk~gg~Fv 172 (257)
T d2p41a1 140 IGESSPNPTVEAGRTLRVLNLVENWLSNNTQFC 172 (257)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred CCCCCCCchhhhhhHHHHHHHHHHHcccCCEEE
Confidence 643322111 11246677789999999654
|
| >d1qtwa_ c.1.15.1 (A:) Endonuclease IV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Endonuclease IV domain: Endonuclease IV species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.033 Score=53.38 Aligned_cols=169 Identities=10% Similarity=0.039 Sum_probs=102.6
Q ss_pred eEEeecCCCCCCHHHHHHHHHhCCccEEEecCCCccc-ccc-cccccccccCCCCccccc-CCCCCcCccceEEEecCCc
Q psy17734 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRF-ARH-KDVDRYRVFGLPEAQVQS-LSSICPQWLKLIVCDIQCK 84 (626)
Q Consensus 8 ~~~g~~~~~~~~~~~~~~~~~~~~~df~~~pi~~~~~-~~~-~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~v~~~s~w 84 (626)
.++|..+.....|.+++..|.+.|||-|=+.+.+||. +.. .... . ... .+. +... ......+.+..+-.
T Consensus 2 ~~~~~h~s~~~~l~~a~~~a~e~G~~~ieif~~~P~~w~~~~~~~~--~----~~~-~k~~~~~~-gl~~~~~~~~~p~~ 73 (285)
T d1qtwa_ 2 KYIGAHVSAAGGLANAAIRAAEIDATAFALFTKNQRQWRAAPLTTQ--T----IDE-FKAACEKY-HYTSAQILPHDSYL 73 (285)
T ss_dssp CEEEEECCCTTCHHHHHHHHHHTTCSEEECCSSCSSCSSCCCCCHH--H----HHH-HHHHHHHT-TCCGGGBCCBCCTT
T ss_pred CcEEEEeccccCHHHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHH--H----HHH-HHHHHHHc-CCCcceeEecCCcc
Confidence 5789988877889999999999999999999888873 211 0000 0 000 011 1110 00111222222334
Q ss_pred ccccCCccHHHHHHHHHHHHHHHhhhhhhCCCeEEEcC----CCCC----hhhHHHHHHHHhccCCceEEEEEeeccCCC
Q psy17734 85 LKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSL----DQPD----FCNFARTLYAHSEKNMSYTAWIKVPIRPVD 156 (626)
Q Consensus 85 ~~~~ds~~~~~~~~s~~~l~~e~~~a~~~g~~~~i~~~----~~~~----~~~~ar~~~~~~~~~~~~~~~i~~p~~~~~ 156 (626)
+ ++.|+|+.+|+.+.+.+++.++.|..||.+.+++.+ .... ...+++.++........+.+-+. ....
T Consensus 74 ~-n~~~~~~~~r~~s~~~~~~~i~~a~~lG~~~vv~h~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~le--~~~~- 149 (285)
T d1qtwa_ 74 I-NLGHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVTAVIE--NTAG- 149 (285)
T ss_dssp C-CTTCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEECCCBCTTTSCHHHHHHHHHHHHHHHHHHCSSCEEEEE--CCCC-
T ss_pred c-ccccchHHHHHHHHHHHHHHHHHHHHcCCCceeeeceeccCcccHHHHHHHHHHHHHHHHHhccCCeEEEe--eccc-
Confidence 5 899999999999999999999999999999999943 1111 12234444443333333333332 2111
Q ss_pred ccccccCCCCCCccchHHHHHHHHHhcCCCCceEEEEEec
Q psy17734 157 TSMLRQQEEEPSSQDTWRWWNMFRSVTNYHSKFELALEIN 196 (626)
Q Consensus 157 ~~~~~~~~~~~~~~~~w~~W~~~r~~c~~~~~l~v~L~l~ 196 (626)
.......+.+.+..+...+++++++++.++..
T Consensus 150 --------~~~~~~~~~~~~~~i~~~~~~~~~vgl~lD~~ 181 (285)
T d1qtwa_ 150 --------QGSNLGFKFEHLAAIIDGVEDKSRVGVCIDTC 181 (285)
T ss_dssp --------CTTBCCSSHHHHHHHHHHCSCGGGEEEEEEHH
T ss_pred --------cCCcCcCCHHHHHHHHHHhcccccceEecccc
Confidence 00011246666666666788889999999976
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.15 E-value=0.0028 Score=63.72 Aligned_cols=61 Identities=20% Similarity=0.123 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~ 410 (626)
++.+|||||+|.|.|+..++.+++ + .+|+|||+++.....++... + ++ +++++++|...|.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~---~-~~v~~iE~D~~~~~~L~~~~-~--~~-~~~ii~~D~l~~~ 103 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYC---P-RQYSLLEKRSSLYKFLNAKF-E--GS-PLQILKRDPYDWS 103 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHC---C-SEEEEECCCHHHHHHHHHHT-T--TS-SCEEECSCTTCHH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC---C-CEEEEEECCHHHHHHHHHhc-c--CC-CcEEEeCchhhcc
Confidence 567899999999999987776653 2 49999999998776665542 2 23 4999999987653
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.99 E-value=0.013 Score=53.08 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=58.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEe---cc-------cccCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSE---DM-------RTWNA 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~---D~-------~~~~~ 411 (626)
++.+||++||| +++..+++.++..|+ .+|+++|.++.-....+. .|- . . ++.. +. .+...
T Consensus 28 ~G~~VlV~GaG--~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~---lGa--~-~-vi~~~~~~~~~~~~~i~~~~~ 97 (182)
T d1vj0a2 28 AGKTVVIQGAG--PLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEE---IGA--D-L-TLNRRETSVEERRKAIMDITH 97 (182)
T ss_dssp BTCEEEEECCS--HHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHH---TTC--S-E-EEETTTSCHHHHHHHHHHHTT
T ss_pred CCCEEEEECCC--ccchhheeccccccc-cccccccccccccccccc---ccc--e-E-EEeccccchHHHHHHHHHhhC
Confidence 57899999875 788888888888886 399999999865522222 232 1 2 2221 11 11122
Q ss_pred CCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 412 PEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 412 p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
...+|+|+- ..| .+..++.+.+.|+++|.++
T Consensus 98 ~~g~Dvvid-~vG-------~~~~~~~a~~~l~~~G~iv 128 (182)
T d1vj0a2 98 GRGADFILE-ATG-------DSRALLEGSELLRRGGFYS 128 (182)
T ss_dssp TSCEEEEEE-CSS-------CTTHHHHHHHHEEEEEEEE
T ss_pred CCCceEEee-cCC-------chhHHHHHHHHhcCCCEEE
Confidence 356999873 322 2446777788999999876
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=95.98 E-value=0.0036 Score=60.65 Aligned_cols=74 Identities=11% Similarity=0.060 Sum_probs=51.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHH---HcC-----CCCCcEEEEEecccccC--CC
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKK---EEQ-----WAQSDVTIVSEDMRTWN--AP 412 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~---~n~-----~~~~nV~vi~~D~~~~~--~p 412 (626)
.+|||+-||.|..+..++. .| .+|++||.||... .....++ .+. ... +++++++|..++- ..
T Consensus 90 ~~VlD~TaGlG~Da~vlA~----~G--~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~-ri~li~~Ds~~~L~~~~ 162 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLAS----VG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQE-RLQLIHASSLTALTDIT 162 (250)
T ss_dssp CCEEETTCTTCHHHHHHHH----HT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHH-HEEEEESCHHHHSTTCS
T ss_pred CEEEECCCcccHHHHHHHh----CC--CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhh-hheeecCcHHHHHhccC
Confidence 4799999999999964333 24 3999999999654 3332222 111 112 4999999988753 34
Q ss_pred CCccEEEecccc
Q psy17734 413 EKADIMVSELLG 424 (626)
Q Consensus 413 ~k~DiIVSEllg 424 (626)
.++|+|.-++|-
T Consensus 163 ~~~DvIYlDPMF 174 (250)
T d2oyra1 163 PRPQVVYLDPMF 174 (250)
T ss_dssp SCCSEEEECCCC
T ss_pred CCCCEEEECCCC
Confidence 679999999873
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.98 E-value=0.036 Score=49.29 Aligned_cols=94 Identities=19% Similarity=0.219 Sum_probs=59.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccc-cC---------C
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT-WN---------A 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~-~~---------~ 411 (626)
++.+|+++||| +++.++++.++..|+ +|+++|.++.-....+. .+- . ..++..+..+ .. .
T Consensus 26 ~g~~vlV~G~G--~vG~~~~~~ak~~Ga--~vi~v~~~~~r~~~a~~---~ga--~-~~~~~~~~~~~~~~~~~~~~~~~ 95 (170)
T d1e3ja2 26 LGTTVLVIGAG--PIGLVSVLAAKAYGA--FVVCTARSPRRLEVAKN---CGA--D-VTLVVDPAKEEESSIIERIRSAI 95 (170)
T ss_dssp TTCEEEEECCS--HHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHH---TTC--S-EEEECCTTTSCHHHHHHHHHHHS
T ss_pred CCCEEEEEccc--ccchhhHhhHhhhcc--cccccchHHHHHHHHHH---cCC--c-EEEeccccccccchhhhhhhccc
Confidence 56789999865 677777888887784 89999999865422222 222 2 3333222111 10 1
Q ss_pred CCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 412 PEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 412 p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
...+|++|- .. ..+..++.+.+.++++|.++--.
T Consensus 96 g~g~D~vid-~~-------g~~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 96 GDLPNVTID-CS-------GNEKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp SSCCSEEEE-CS-------CCHHHHHHHHHHSCTTCEEEECS
T ss_pred ccCCceeee-cC-------CChHHHHHHHHHHhcCCceEEEe
Confidence 356898864 22 24667888888999999987543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.56 E-value=0.039 Score=49.26 Aligned_cols=95 Identities=14% Similarity=0.136 Sum_probs=60.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC---------CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN---------AP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~---------~p 412 (626)
++.+|+.+|| |++++.+++.++..|+ .+|+++|.++.-....+. .|-. . ++..+-.+.. ..
T Consensus 26 ~gd~VlI~G~--G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~---~Ga~---~-~~~~~~~~~~~~~~~~~~~~g 95 (171)
T d1pl8a2 26 LGHKVLVCGA--GPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKE---IGAD---L-VLQISKESPQEIARKVEGQLG 95 (171)
T ss_dssp TTCEEEEECC--SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHH---TTCS---E-EEECSSCCHHHHHHHHHHHHT
T ss_pred CCCEEEEECC--CccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHH---hCCc---c-cccccccccccccccccccCC
Confidence 5678999987 4677777788887786 499999999865432222 2321 2 2222211110 12
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
..+|+++- .. ..+..++.+.+.+++||.++--..
T Consensus 96 ~g~Dvvid-~~-------G~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 96 CKPEVTIE-CT-------GAEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp SCCSEEEE-CS-------CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred CCceEEEe-cc-------CCchhHHHHHHHhcCCCEEEEEec
Confidence 57899864 22 236678888899999999876554
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.56 E-value=0.015 Score=52.80 Aligned_cols=94 Identities=21% Similarity=0.217 Sum_probs=59.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-------CCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-------NAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-------~~p~k 414 (626)
++.+|+.+||| +++.++++.++..|+ .+|+++|.++.-....+. .|- -.++..+-.++ .....
T Consensus 27 ~g~~VlI~GaG--~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~---lGa----~~~i~~~~~~~~~~v~~~t~g~G 96 (174)
T d1jqba2 27 MGSSVVVIGIG--AVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKF---YGA----TDILNYKNGHIEDQVMKLTNGKG 96 (174)
T ss_dssp TTCCEEEECCS--HHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHH---HTC----SEEECGGGSCHHHHHHHHTTTSC
T ss_pred CCCEEEEEcCC--cchhhhhhhhhcccc-cccccccchhhhHHHHHh---hCc----cccccccchhHHHHHHHHhhccC
Confidence 56789999875 677777888888886 389999999864422222 222 22333222222 12245
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
+|+++- ..| .++.++.+.+.++|+|.++--.
T Consensus 97 ~D~vid-~~g-------~~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 97 VDRVIM-AGG-------GSETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp EEEEEE-CSS-------CTTHHHHHHHHEEEEEEEEECC
T ss_pred cceEEE-ccC-------CHHHHHHHHHHHhcCCEEEEEe
Confidence 998764 222 2446777778999999987643
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.43 E-value=0.0054 Score=56.95 Aligned_cols=99 Identities=17% Similarity=0.096 Sum_probs=59.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccc-------cCCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT-------WNAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~-------~~~p~k 414 (626)
++.+||++||| +++..++..++..|+ .+|+++|.++.-....+. .|- -.++...-.+ +.....
T Consensus 25 ~G~tVlV~GaG--~vGl~a~~~ak~~ga-~~Vi~~d~~~~rl~~a~~---~Ga----~~~~~~~~~~~~~~i~~~t~g~g 94 (195)
T d1kola2 25 PGSTVYVAGAG--PVGLAAAASARLLGA-AVVIVGDLNPARLAHAKA---QGF----EIADLSLDTPLHEQIAALLGEPE 94 (195)
T ss_dssp TTCEEEEECCS--HHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHH---TTC----EEEETTSSSCHHHHHHHHHSSSC
T ss_pred CCCEEEEECcC--HHHHHHHHHHHhhcc-cceeeecccchhhHhhhh---ccc----cEEEeCCCcCHHHHHHHHhCCCC
Confidence 67899999986 455555666766665 499999999864422222 221 2222211111 112356
Q ss_pred ccEEEeccccccC--------CCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 415 ADIMVSELLGSFG--------DNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 415 ~DiIVSEllgsfg--------~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+|+++ |..|.-. .....++.++.+.+.++|+|.+.-
T Consensus 95 ~D~vi-d~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~ 138 (195)
T d1kola2 95 VDCAV-DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGI 138 (195)
T ss_dssp EEEEE-ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEE
T ss_pred cEEEE-ECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEE
Confidence 89987 4444211 112246789999999999998753
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.41 E-value=0.043 Score=49.29 Aligned_cols=93 Identities=18% Similarity=0.078 Sum_probs=60.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC------CCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN------APEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~------~p~k~ 415 (626)
++.+|+.+||| +++..+++.++..|. .+|+++|.++.-....+ +.|. .+++..+-.++. .++.+
T Consensus 28 ~g~~VlI~G~G--~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~---~~Ga----~~~i~~~~~~~~~~i~~~t~gg~ 97 (174)
T d1f8fa2 28 PASSFVTWGAG--AVGLSALLAAKVCGA-SIIIAVDIVESRLELAK---QLGA----THVINSKTQDPVAAIKEITDGGV 97 (174)
T ss_dssp TTCEEEEESCS--HHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHH---HHTC----SEEEETTTSCHHHHHHHHTTSCE
T ss_pred CCCEEEEeCCC--HHHhhhhhccccccc-ceeeeeccHHHHHHHHH---HcCC----eEEEeCCCcCHHHHHHHHcCCCC
Confidence 67889999875 677777777777776 48899999985442222 2232 334544333321 23579
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
|+++- .. ..++.++.+.+.++|+|.++--
T Consensus 98 D~vid-~~-------G~~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 98 NFALE-ST-------GSPEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp EEEEE-CS-------CCHHHHHHHHHTEEEEEEEEEC
T ss_pred cEEEE-cC-------CcHHHHHHHHhcccCceEEEEE
Confidence 98863 22 2466788888999999988754
|
| >d1xp3a1 c.1.15.1 (A:2-298) Endonuclease IV {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Endonuclease IV domain: Endonuclease IV species: Bacillus anthracis [TaxId: 1392]
Probab=95.13 E-value=0.078 Score=51.99 Aligned_cols=164 Identities=12% Similarity=0.055 Sum_probs=105.0
Q ss_pred EEeecCCCCC--CHHHHHHHHHhCCccEEEecCCCcccccccccccccccCCCCccccc----CCCCCcCcc-ceEEEec
Q psy17734 9 SVGLEYPTCY--NIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQS----LSSICPQWL-KLIVCDI 81 (626)
Q Consensus 9 ~~g~~~~~~~--~~~~~~~~~~~~~~df~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~-~~~v~~~ 81 (626)
.+|..+.... .+..+++.|.+.|.+-+=+-..+|+--+.. +++.. +...|.... ..++.-.
T Consensus 2 ~iG~H~s~~gg~~~~~a~~~a~~~g~~~~QiF~~~p~~~~~~------------~~~~~~~~~~~~~~~~~~i~~i~vHa 69 (297)
T d1xp3a1 2 KIGSHVSMSGKKMLLAASEEAVSYGATTFMIYTGAPQNTRRK------------PIEELNIEAGRKHMEQNGIEEIIIHA 69 (297)
T ss_dssp CEEEBCCCCSSSTHHHHHHHHHTTTCSSEEECSSCTTCCCCC------------CGGGGCHHHHHHHHHHTTCCCEEEEC
T ss_pred eEEEeeccCCChHHHHHHHHHHHcCCCEEEEECCCCCCCCCC------------CCCHHHHHHHHHHHHHcCCchhhhcC
Confidence 3566665443 489999999999999998888787532210 11111 111111122 2356677
Q ss_pred CCcccccCCc-cHHHHHHHHHHHHHHHhhhhhhCC-CeEEEcC---CC----CChhhHHHHHHHHhccCCceEEEEEeec
Q psy17734 82 QCKLKDFESK-YVERRDHAKDLLHQELEYITYLGI-PFIVVSL---DQ----PDFCNFARTLYAHSEKNMSYTAWIKVPI 152 (626)
Q Consensus 82 s~w~~~~ds~-~~~~~~~s~~~l~~e~~~a~~~g~-~~~i~~~---~~----~~~~~~ar~~~~~~~~~~~~~~~i~~p~ 152 (626)
|-.| .|.|+ ++.+|+.|.+.|++|+..|+-+|+ ..|++.+ .. ....+++..|+..+.....+.+.+....
T Consensus 70 pY~i-Nlas~~~~~~r~~Si~~l~~~l~~a~~lG~a~~vV~HpG~~~~~~~e~~l~~~~~~l~~i~~~~~~~~i~lE~~a 148 (297)
T d1xp3a1 70 PYII-NVGNTTKPETFQLGVDFLRMEIERTSALGVAKQIVLHPGAHVGAGADAGIQQIIKGLNEVLTPDQTVNIALETMA 148 (297)
T ss_dssp CTTC-CTTCCSCHHHHHHHHHHHHHHHHHHHHSSSCCEEEECCEECTTSCHHHHHHHHHHHHHHHCCTTCSSEEEEECCC
T ss_pred ceEe-eccccccHHHHHHHHHHHHHHHHHHHHhccCcEEeeCCcccccCCHHHHHHHHHHHHHHHhhhcccceEEEEecc
Confidence 7778 99877 689999999999999999999997 5678854 11 1234566677775543344444433221
Q ss_pred cCCCccccccCCCCCCccchHHHHHHHHHhcCCCCceEEEEEec
Q psy17734 153 RPVDTSMLRQQEEEPSSQDTWRWWNMFRSVTNYHSKFELALEIN 196 (626)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~w~~W~~~r~~c~~~~~l~v~L~l~ 196 (626)
. .......+.+-...+...|++.++++++|+..
T Consensus 149 --~---------~~~~~g~~~eel~~ii~~~~~~~~vgvClDt~ 181 (297)
T d1xp3a1 149 --G---------KGTECGRSFEEIAKIIDGVKYNEKLSVCFDTC 181 (297)
T ss_dssp --C---------CTTEECCSHHHHHHHHHHCTTGGGEEEEEEHH
T ss_pred --c---------cccccCCCHHHHHHHHHHhccccceeeeccHH
Confidence 1 00111246666777778888899999999987
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.12 E-value=0.046 Score=49.35 Aligned_cols=92 Identities=16% Similarity=0.027 Sum_probs=59.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccc-c-------CC
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRT-W-------NA 411 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~-~-------~~ 411 (626)
.++.+|+.+|| |+++..+++.++..|+ .+|+++|.++.-. .+++ .|- -.++.....+ . ..
T Consensus 27 ~~G~~VlV~G~--G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~----~Ga----~~~i~~~~~~~~~~~~~~~~~ 95 (174)
T d1e3ia2 27 TPGSTCAVFGL--GCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKA----LGA----TDCLNPRELDKPVQDVITELT 95 (174)
T ss_dssp CTTCEEEEECC--SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHH----TTC----SEEECGGGCSSCHHHHHHHHH
T ss_pred CCCCEEEEECC--ChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHH----hCC----CcccCCccchhhhhhhHhhhh
Confidence 36789999987 5677777888887886 4999999998543 3222 222 2233322211 1 12
Q ss_pred CCCccEEEeccccccCCCCCcHHHHHHHHHhcccC-cEEEe
Q psy17734 412 PEKADIMVSELLGSFGDNELSPECLYAAQKYLKED-GISIP 451 (626)
Q Consensus 412 p~k~DiIVSEllgsfg~~El~pe~L~~~~r~Lkpg-Gi~IP 451 (626)
...+|+++- .. +.++.++.+.+.++++ |.++-
T Consensus 96 ~~G~d~vie-~~-------G~~~~~~~a~~~~~~g~G~~v~ 128 (174)
T d1e3ia2 96 AGGVDYSLD-CA-------GTAQTLKAAVDCTVLGWGSCTV 128 (174)
T ss_dssp TSCBSEEEE-SS-------CCHHHHHHHHHTBCTTTCEEEE
T ss_pred cCCCcEEEE-ec-------ccchHHHHHHHHhhcCCeEEEe
Confidence 367899864 22 3577888888999996 87654
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.94 E-value=0.051 Score=48.29 Aligned_cols=95 Identities=24% Similarity=0.260 Sum_probs=59.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-------CCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-------NAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-------~~p~k 414 (626)
++.+|+.+||| |+++..+++.++..|. .+|+++|.++.-....+. .|- -.++..+-.++ ..+..
T Consensus 27 ~g~~vlV~G~~-G~vG~~~~~~~~~~g~-~~V~~~~~~~~~~~~~~~---~Ga----~~~i~~~~~~~~~~~~~~~~~~~ 97 (170)
T d1jvba2 27 PTKTLLVVGAG-GGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKR---AGA----DYVINASMQDPLAEIRRITESKG 97 (170)
T ss_dssp TTCEEEEETTT-SHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHH---HTC----SEEEETTTSCHHHHHHHHTTTSC
T ss_pred CCCEEEEEecc-ccceeeeeeccccccc-ccccccccchhhHHHHHH---cCC----ceeeccCCcCHHHHHHHHhhccc
Confidence 67889999975 5666666666665665 499999999865432222 232 12333333222 12356
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
+|+++- .. ..++.++.+.+.++|+|.++--.
T Consensus 98 ~d~vid-~~-------g~~~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 98 VDAVID-LN-------NSEKTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp EEEEEE-SC-------CCHHHHTTGGGGEEEEEEEEECC
T ss_pred chhhhc-cc-------ccchHHHhhhhhcccCCEEEEec
Confidence 998874 21 23566777778999999987553
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=94.54 E-value=0.043 Score=58.26 Aligned_cols=112 Identities=12% Similarity=0.009 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCC--------------ccEEEEEeCCHHHH-HHHHHHHHcCCCCC---cEEEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANR--------------KVRVYAVEKNMSAV-VGLKYKKEEQWAQS---DVTIVS 403 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~--------------~~~V~AVE~np~a~-~a~~~~~~n~~~~~---nV~vi~ 403 (626)
++.+|+|-.||+|.+...+.+....... ...++|+|+++.+. ++..++.-.+.... +-.+..
T Consensus 164 ~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~ 243 (524)
T d2ar0a1 164 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 243 (524)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhh
Confidence 4568999999999998665554332111 12689999999776 55555543433211 012333
Q ss_pred ecccc--cCCCCCccEEEeccccc-cCCC---------CCcHH--HHHHHHHhcccCcE---EEecc
Q psy17734 404 EDMRT--WNAPEKADIMVSELLGS-FGDN---------ELSPE--CLYAAQKYLKEDGI---SIPYN 453 (626)
Q Consensus 404 ~D~~~--~~~p~k~DiIVSEllgs-fg~~---------El~pe--~L~~~~r~LkpgGi---~IP~~ 453 (626)
++... .....+||+||+++.-. -... ..-.+ ++..+.+.||+||+ ++|++
T Consensus 244 ~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~ 310 (524)
T d2ar0a1 244 GNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDN 310 (524)
T ss_dssp SCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred hhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehH
Confidence 33221 11236899999998521 1000 00112 56777889999975 66664
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.53 E-value=0.09 Score=46.36 Aligned_cols=92 Identities=12% Similarity=0.023 Sum_probs=56.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC-----CCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN-----APEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~-----~p~k~D 416 (626)
++.+|+.+|| |+++..+++.++..| .+|+++|.++.-....+ +.|- -.++..+-.+.. ....+|
T Consensus 27 ~g~~VlV~Ga--G~vG~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~---~~Ga----~~~i~~~~~~~~~~~~~~~~g~~ 95 (166)
T d1llua2 27 PGQWVAISGI--GGLGHVAVQYARAMG--LHVAAIDIDDAKLELAR---KLGA----SLTVNARQEDPVEAIQRDIGGAH 95 (166)
T ss_dssp TTCEEEEECC--SHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH---HTTC----SEEEETTTSCHHHHHHHHHSSEE
T ss_pred CCCEEEEeec--cccHHHHHHHHHHcC--CccceecchhhHHHhhh---ccCc----cccccccchhHHHHHHHhhcCCc
Confidence 5778999887 567877888888888 49999999985542222 2232 233433322221 012344
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+|-+ ...++.++...+.|+++|.++.-
T Consensus 96 ~~i~~--------~~~~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 96 GVLVT--------AVSNSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp EEEEC--------CSCHHHHHHHHTTEEEEEEEEEC
T ss_pred ccccc--------cccchHHHHHHHHhcCCcEEEEE
Confidence 43321 12356777788899999998754
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.19 E-value=0.047 Score=48.66 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc--CCCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW--NAPEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~--~~p~k~DiI 418 (626)
++.+|+++|+| +++.++++.++..|+ +|+++|.|+.-. .+++ .|-. ..+-..+-.++ ...+.+|.+
T Consensus 27 ~g~~vlI~GaG--~vG~~a~q~ak~~G~--~vi~~~~~~~k~~~a~~----lGa~---~~i~~~~~~~~~~~~~~~~d~v 95 (168)
T d1piwa2 27 PGKKVGIVGLG--GIGSMGTLISKAMGA--ETYVISRSSRKREDAMK----MGAD---HYIATLEEGDWGEKYFDTFDLI 95 (168)
T ss_dssp TTCEEEEECCS--HHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHH----HTCS---EEEEGGGTSCHHHHSCSCEEEE
T ss_pred CCCEEEEECCC--CcchhHHHHhhhccc--cccccccchhHHHHhhc----cCCc---EEeeccchHHHHHhhhcccceE
Confidence 67899999875 677777888887784 899999997543 3322 2321 22221222222 123679988
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+- ..++.... .+....+.|+|+|.++--
T Consensus 96 i~-~~~~~~~~-----~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 96 VV-CASSLTDI-----DFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp EE-CCSCSTTC-----CTTTGGGGEEEEEEEEEC
T ss_pred EE-EecCCccc-----hHHHHHHHhhccceEEEe
Confidence 74 33322111 123345779999988754
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.10 E-value=0.16 Score=45.12 Aligned_cols=93 Identities=13% Similarity=0.026 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc------CCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW------NAPEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~------~~p~k~ 415 (626)
++.+|+.+|+| +++..+++.++..|+ .+|+++|.++.-....+ +.+- .+++..+-..+ .....+
T Consensus 32 ~g~~vli~GaG--~vG~~~~~~a~~~g~-~~vv~~~~~~~k~~~~~---~~ga----~~~i~~~~~~~~~~~~~~~~~g~ 101 (172)
T d1h2ba2 32 PGAYVAIVGVG--GLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAE---RLGA----DHVVDARRDPVKQVMELTRGRGV 101 (172)
T ss_dssp TTCEEEEECCS--HHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHH---HTTC----SEEEETTSCHHHHHHHHTTTCCE
T ss_pred CCCEEEEeCCC--hHHHHHHHHHHhhcC-cccccccchhHHHHHHh---hccc----ceeecCcccHHHHHHHhhCCCCc
Confidence 56889999875 566666777766665 48999999985442222 2221 34444332211 123569
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
|+++-- . ..+..++...+.|+++|.++--
T Consensus 102 d~vid~-~-------g~~~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 102 NVAMDF-V-------GSQATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp EEEEES-S-------CCHHHHHHGGGGEEEEEEEEEC
T ss_pred eEEEEe-c-------CcchHHHHHHHHHhCCCEEEEE
Confidence 988752 1 2355678888899999988754
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=93.34 E-value=0.07 Score=48.12 Aligned_cols=98 Identities=12% Similarity=0.183 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIVS 420 (626)
+..+|+.+|+|. -++.+++.++..|+ +|+++|.++.....++..- .. +++....+-..+.. -..+|+||+
T Consensus 31 ~pa~V~ViGaGv--aG~~A~~~A~~lGA--~V~~~D~~~~~l~~l~~~~----~~-~~~~~~~~~~~l~~~~~~aDivI~ 101 (168)
T d1pjca1 31 KPGKVVILGGGV--VGTEAAKMAVGLGA--QVQIFDINVERLSYLETLF----GS-RVELLYSNSAEIETAVAEADLLIG 101 (168)
T ss_dssp CCCEEEEECCSH--HHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH----GG-GSEEEECCHHHHHHHHHTCSEEEE
T ss_pred CCcEEEEECCCh--HHHHHHHHHhhCCC--EEEEEeCcHHHHHHHHHhh----cc-cceeehhhhhhHHHhhccCcEEEE
Confidence 567999999986 44455788888885 9999999987664443322 22 36666655544431 147999998
Q ss_pred ccccccCCCCCcHHHH-HHHHHhcccCcEEEe
Q psy17734 421 ELLGSFGDNELSPECL-YAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ellgsfg~~El~pe~L-~~~~r~LkpgGi~IP 451 (626)
-.+- .....|.++ +..-+.+|||.++|=
T Consensus 102 aali---pG~~aP~lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 102 AVLV---PGRRAPILVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp CCCC---TTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred eeec---CCcccCeeecHHHHhhcCCCcEEEE
Confidence 5542 112234433 334466899998873
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.14 E-value=0.31 Score=43.08 Aligned_cols=93 Identities=14% Similarity=0.132 Sum_probs=58.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-------CCCC
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-------NAPE 413 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-------~~p~ 413 (626)
.++.+||+.|+ +|..+..+++.++..|+ +|++++-++...... ++.|-. .++...-.++ ...+
T Consensus 27 ~~g~~VlV~Ga-~G~vG~~aiq~a~~~G~--~vi~~~~~~~~~~~~---~~~Ga~----~vi~~~~~~~~~~i~~~t~~~ 96 (174)
T d1yb5a2 27 KAGESVLVHGA-SGGVGLAACQIARAYGL--KILGTAGTEEGQKIV---LQNGAH----EVFNHREVNYIDKIKKYVGEK 96 (174)
T ss_dssp CTTCEEEEETC-SSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHH---HHTTCS----EEEETTSTTHHHHHHHHHCTT
T ss_pred CCCCEEEEEec-cccccccccccccccCc--ccccccccccccccc---cccCcc----cccccccccHHHHhhhhhccC
Confidence 36789999997 46777777888888884 899999887543222 223432 2332211111 1236
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+|+++.- .| .+.++...+.|+|+|.++--
T Consensus 97 g~d~v~d~-~g--------~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 97 GIDIIIEM-LA--------NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp CEEEEEES-CH--------HHHHHHHHHHEEEEEEEEEC
T ss_pred CceEEeec-cc--------HHHHHHHHhccCCCCEEEEE
Confidence 79998752 11 34567777889999988743
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=92.99 E-value=0.95 Score=45.81 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=39.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCC--cEEEEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQS--DVTIVS 403 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~--nV~vi~ 403 (626)
.++.+++||||=.|..+..++.... +...+|+|+|.+|... ...++++.+...+. +|.++.
T Consensus 211 ~kn~vfIDVGAniG~~s~~f~~~~~--~~~~kV~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~ 274 (395)
T d2py6a1 211 SDSEKMVDCGASIGESLAGLIGVTK--GKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHG 274 (395)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHT--SCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEEC
T ss_pred CCCCEEEECCcCCCHHHHHHHHhcC--CCCCEEEEEeCCHHHHHHHHHHHHhcccccccceEEEEE
Confidence 3667999999999988764443332 2224999999999776 55555555544321 266554
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=92.56 E-value=0.052 Score=48.64 Aligned_cols=92 Identities=16% Similarity=0.091 Sum_probs=56.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec-ccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED-MRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D-~~~~~~p~k~DiIVS 420 (626)
++.+||..|+ +|+++.++++.++..|+ +|++++.++......+ +.|-. ..+-..+ ..+....+.+|+|+-
T Consensus 27 ~g~~VlI~ga-~G~vG~~aiqlak~~G~--~vi~~~~~~~~~~~~~---~lGa~---~~i~~~~~~~~~~~~~g~D~v~d 97 (171)
T d1iz0a2 27 PGEKVLVQAA-AGALGTAAVQVARAMGL--RVLAAASRPEKLALPL---ALGAE---EAATYAEVPERAKAWGGLDLVLE 97 (171)
T ss_dssp TTCEEEESST-TBHHHHHHHHHHHHTTC--EEEEEESSGGGSHHHH---HTTCS---EEEEGGGHHHHHHHTTSEEEEEE
T ss_pred CCCEEEEEec-cccchhhhhhhhccccc--cccccccccccccccc---ccccc---eeeehhhhhhhhhcccccccccc
Confidence 6788999885 46788888888988885 8999998875332222 23322 2121111 112223467999875
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..| +. +...-+.|+|+|.++-.
T Consensus 98 -~~G-----~~----~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 98 -VRG-----KE----VEESLGLLAHGGRLVYI 119 (171)
T ss_dssp -CSC-----TT----HHHHHTTEEEEEEEEEC
T ss_pred -ccc-----hh----HHHHHHHHhcCCcEEEE
Confidence 333 22 44556789999998744
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.26 E-value=0.5 Score=41.45 Aligned_cols=90 Identities=16% Similarity=0.018 Sum_probs=56.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccc-cc-------CCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMR-TW-------NAPE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~-~~-------~~p~ 413 (626)
++.+|+..||| | ++.++++.++..|+ .+|++++.++.-....+. .|- -.++..+-. +. ..+.
T Consensus 28 ~G~tVlI~GaG-G-vG~~aiq~ak~~G~-~~vi~~~~~~~k~~~ak~---lGa----~~~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2fzwa2 28 PGSVCAVFGLG-G-VGLAVIMGCKVAGA-SRIIGVDINKDKFARAKE---FGA----TECINPQDFSKPIQEVLIEMTDG 97 (176)
T ss_dssp TTCEEEEECCS-H-HHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHH---HTC----SEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCEEEEecch-h-HHHHHHHHHHHHhc-CceEEEcccHHHHHHHHH---hCC----cEEEeCCchhhHHHHHHHHHcCC
Confidence 67899999997 4 57777888887776 499999999854422222 232 223322111 11 1235
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEE
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGIS 449 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~ 449 (626)
.+|+++-- . ..+..++.+...+++||..
T Consensus 98 g~D~vid~-~-------G~~~~~~~~~~~~~~g~~~ 125 (176)
T d2fzwa2 98 GVDYSFEC-I-------GNVKVMRAALEACHKGWGV 125 (176)
T ss_dssp CBSEEEEC-S-------CCHHHHHHHHHTBCTTTCE
T ss_pred CCcEeeec-C-------CCHHHHHHHHHhhcCCcee
Confidence 79998752 2 2356777778888888654
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.25 E-value=0.32 Score=43.44 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=33.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHH
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLK 387 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~ 387 (626)
++.+|+.+||| +++..+++.++..|+ .+|+++|.++.-. .+++
T Consensus 29 ~g~tVlI~G~G--gvGl~ai~~ak~~G~-~~Vi~vd~~~~kl~~Ak~ 72 (176)
T d1d1ta2 29 PGSTCVVFGLG--GVGLSVIMGCKSAGA-SRIIGIDLNKDKFEKAMA 72 (176)
T ss_dssp TTCEEEEECCS--HHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHH
T ss_pred CCCEEEEECCC--chhHHHHHHHHHcCC-ceEEEecCcHHHHHHHHh
Confidence 67899999885 677777888888886 4999999998654 4443
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=91.80 E-value=0.38 Score=42.82 Aligned_cols=91 Identities=15% Similarity=0.100 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc--------CC
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW--------NA 411 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~--------~~ 411 (626)
.++.+|+.+||| +++.++++.++..|+ .+|+++|.++.-. .+++ .|- ..++...-.+- ..
T Consensus 26 ~~G~~VlV~GaG--gvGl~a~~~ak~~G~-~~Vi~~d~~~~kl~~a~~----lGa----~~~i~~~~~d~~~~~~~~~~~ 94 (174)
T d1p0fa2 26 TPGSTCAVFGLG--GVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIE----LGA----TECLNPKDYDKPIYEVICEKT 94 (174)
T ss_dssp CTTCEEEEECCS--HHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHH----TTC----SEEECGGGCSSCHHHHHHHHT
T ss_pred CCCCEEEEECCC--chhHHHHHHHHHcCC-ceeeccCChHHHHHHHHH----cCC----cEEEcCCCchhHHHHHHHHhc
Confidence 367899999985 566667777777776 4999999997544 3332 232 23333222221 12
Q ss_pred CCCccEEEeccccccCCCCCcHHHHHHHHHhc-ccCcEEE
Q psy17734 412 PEKADIMVSELLGSFGDNELSPECLYAAQKYL-KEDGISI 450 (626)
Q Consensus 412 p~k~DiIVSEllgsfg~~El~pe~L~~~~r~L-kpgGi~I 450 (626)
...+|+++-. . ..+..+....+.+ +++|.++
T Consensus 95 ~~G~d~vid~-~-------g~~~~~~~~~~~~~~~~G~~v 126 (174)
T d1p0fa2 95 NGGVDYAVEC-A-------GRIETMMNALQSTYCGSGVTV 126 (174)
T ss_dssp TSCBSEEEEC-S-------CCHHHHHHHHHTBCTTTCEEE
T ss_pred CCCCcEEEEc-C-------CCchHHHHHHHHHHHhcCceE
Confidence 3578988742 1 2344555555555 5568765
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=91.76 E-value=0.18 Score=44.52 Aligned_cols=92 Identities=17% Similarity=0.129 Sum_probs=56.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccc--cCCCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRT--WNAPEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~--~~~p~k~DiI 418 (626)
++.+|+.+|| |+++.++++.++..|+ ++++++.++.-. .+++ .|- -.++..+-.+ ...-+.+|.+
T Consensus 30 ~G~~VlI~Ga--G~vG~~a~qlak~~Ga--~~i~~~~~~~~~~~a~~----lGa----d~~i~~~~~~~~~~~~~~~D~v 97 (168)
T d1uufa2 30 PGKKVGVVGI--GGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKA----LGA----DEVVNSRNADEMAAHLKSFDFI 97 (168)
T ss_dssp TTCEEEEECC--SHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHH----HTC----SEEEETTCHHHHHTTTTCEEEE
T ss_pred CCCEEEEecc--chHHHHHHHHhhcccc--cchhhccchhHHHHHhc----cCC----cEEEECchhhHHHHhcCCCcee
Confidence 6789999987 5688888888888885 778899887543 3222 232 1223221111 1122579988
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
+-.. | . +..+....+.++++|.++.-.
T Consensus 98 id~~-g---~----~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 98 LNTV-A---A----PHNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp EECC-S---S----CCCHHHHHTTEEEEEEEEECC
T ss_pred eeee-e---c----chhHHHHHHHHhcCCEEEEec
Confidence 7522 2 1 223555667899999988543
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.34 E-value=0.39 Score=42.52 Aligned_cols=93 Identities=13% Similarity=0.136 Sum_probs=59.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-------CCCC
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-------NAPE 413 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-------~~p~ 413 (626)
.++.+||..| |+|.++.++++.++..|+ +|+++..++.-.. .+++.|.. .++..+-.++ ....
T Consensus 24 ~~g~~VlI~g-a~g~vG~~~iqla~~~g~--~vi~~~~~~~~~~---~l~~~Ga~----~vi~~~~~~~~~~v~~~t~~~ 93 (183)
T d1pqwa_ 24 SPGERVLIHS-ATGGVGMAAVSIAKMIGA--RIYTTAGSDAKRE---MLSRLGVE----YVGDSRSVDFADEILELTDGY 93 (183)
T ss_dssp CTTCEEEETT-TTSHHHHHHHHHHHHHTC--EEEEEESSHHHHH---HHHTTCCS----EEEETTCSTHHHHHHHHTTTC
T ss_pred CCCCEEEEEC-CCCCcccccchhhccccc--cceeeeccccccc---cccccccc----ccccCCccCHHHHHHHHhCCC
Confidence 3678999987 477888888888888884 8888887764332 22233432 2333222222 1236
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+|+++.- .| .+.++.+.+.|+++|.++-.
T Consensus 94 g~d~v~d~-~g--------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 94 GVDVVLNS-LA--------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp CEEEEEEC-CC--------THHHHHHHHTEEEEEEEEEC
T ss_pred CEEEEEec-cc--------chHHHHHHHHhcCCCEEEEE
Confidence 79999862 11 23566677899999998853
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.19 E-value=0.27 Score=46.74 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=56.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--------
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-------- 411 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-------- 411 (626)
.++++||.-|+++|+=.. .++...+.| .+|+.++.++... .+.+.++..+...+ +..+++|+.+-+.
T Consensus 8 lk~Kv~lITGas~GIG~a-iA~~la~~G--~~Vv~~~r~~~~l~~~~~~l~~~~~~~~-~~~~~~Dls~~~~v~~~v~~~ 83 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAA-VARALVQQG--LKVVGCARTVGNIEELAAECKSAGYPGT-LIPYRCDLSNEEDILSMFSAI 83 (257)
T ss_dssp GTTCEEEEESTTSHHHHH-HHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCSSE-EEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHH-HHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCce-EEEEEccCCCHHHHHHHHHHH
Confidence 468999999999886543 444444567 4999999998654 55555566666566 9999999987531
Q ss_pred ---CCCccEEEecc
Q psy17734 412 ---PEKADIMVSEL 422 (626)
Q Consensus 412 ---p~k~DiIVSEl 422 (626)
-+++|++|..-
T Consensus 84 ~~~~g~iD~lVnnA 97 (257)
T d1xg5a_ 84 RSQHSGVDICINNA 97 (257)
T ss_dssp HHHHCCCSEEEECC
T ss_pred HHhcCCCCEEEecc
Confidence 16799999864
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.12 E-value=0.46 Score=41.56 Aligned_cols=92 Identities=12% Similarity=0.086 Sum_probs=54.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEecccc
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLG 424 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllg 424 (626)
.|+.+||| .++...+++.++.|...+|+++|.|+......+ ..+.-+ ....+..... ....|+|+--...
T Consensus 3 ~I~IIG~G--~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~---~~~~~~----~~~~~~~~~~-~~~~dlIila~p~ 72 (171)
T d2g5ca2 3 NVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAV---DLGIID----EGTTSIAKVE-DFSPDFVMLSSPV 72 (171)
T ss_dssp EEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH---HTTSCS----EEESCGGGGG-GTCCSEEEECSCH
T ss_pred EEEEEccC--HHHHHHHHHHHhcCCCeEEEEEECChHHHHHHH---Hhhcch----hhhhhhhhhh-ccccccccccCCc
Confidence 58889885 566655667776665569999999986653222 233322 2222222222 1367998753221
Q ss_pred ccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 425 SFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 425 sfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
....+++..+..+++++.+++-
T Consensus 73 -----~~~~~vl~~l~~~~~~~~ii~d 94 (171)
T d2g5ca2 73 -----RTFREIAKKLSYILSEDATVTD 94 (171)
T ss_dssp -----HHHHHHHHHHHHHSCTTCEEEE
T ss_pred -----hhhhhhhhhhhccccccccccc
Confidence 1235577777888888876653
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.88 E-value=0.31 Score=41.16 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=46.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC-----CCCccEE
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA-----PEKADIM 418 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~-----p~k~DiI 418 (626)
++|+.+|+| .++..+++.....| ..|+.||+|+......+. .. ++.++.||..+... -+++|.+
T Consensus 1 M~IvI~G~G--~~G~~la~~L~~~g--~~v~vid~d~~~~~~~~~----~~---~~~vi~Gd~~~~~~l~~~~i~~a~~v 69 (132)
T d1lssa_ 1 MYIIIAGIG--RVGYTLAKSLSEKG--HDIVLIDIDKDICKKASA----EI---DALVINGDCTKIKTLEDAGIEDADMY 69 (132)
T ss_dssp CEEEEECCS--HHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH----HC---SSEEEESCTTSHHHHHHTTTTTCSEE
T ss_pred CEEEEECCC--HHHHHHHHHHHHCC--CCcceecCChhhhhhhhh----hh---hhhhccCcccchhhhhhcChhhhhhh
Confidence 368888875 57777677666556 599999999976532221 12 37899999887531 2679999
Q ss_pred Ee
Q psy17734 419 VS 420 (626)
Q Consensus 419 VS 420 (626)
++
T Consensus 70 v~ 71 (132)
T d1lssa_ 70 IA 71 (132)
T ss_dssp EE
T ss_pred cc
Confidence 87
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.86 E-value=0.41 Score=41.69 Aligned_cols=92 Identities=16% Similarity=0.065 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC-----CCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN-----APEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~-----~p~k~D 416 (626)
++.+||..||| +.+..+++.++..|+ +|++++.++.-.... +..|- -.++...-.+.. .....|
T Consensus 27 ~g~~vlv~G~G--~iG~~a~~~a~~~g~--~v~~~~~~~~r~~~~---k~~Ga----~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T d1rjwa2 27 PGEWVAIYGIG--GLGHVAVQYAKAMGL--NVVAVDIGDEKLELA---KELGA----DLVVNPLKEDAAKFMKEKVGGVH 95 (168)
T ss_dssp TTCEEEEECCS--TTHHHHHHHHHHTTC--EEEEECSCHHHHHHH---HHTTC----SEEECTTTSCHHHHHHHHHSSEE
T ss_pred CCCEEEEeecc--cchhhhhHHHhcCCC--eEeccCCCHHHhhhh---hhcCc----ceecccccchhhhhcccccCCCc
Confidence 67889998875 466667888887774 899999998654222 22332 122221111111 012344
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+|-+. ..+..+..+.+.|+|+|.++-.
T Consensus 96 ~~v~~~--------~~~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 96 AAVVTA--------VSKPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp EEEESS--------CCHHHHHHHHHHEEEEEEEEEC
T ss_pred eEEeec--------CCHHHHHHHHHHhccCCceEec
Confidence 444322 2356788888899999998754
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.81 E-value=0.29 Score=46.90 Aligned_cols=78 Identities=13% Similarity=0.133 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
+++++|.-|+++|+ +...+++..+.| .+|+.++.++... .+.+.+...+....++..+.+|+.+...
T Consensus 3 ~gK~alITGas~GI-G~aia~~la~~G--a~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (274)
T d1xhla_ 3 SGKSVIITGSSNGI-GRSAAVIFAKEG--AQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL 79 (274)
T ss_dssp TTCEEEETTCSSHH-HHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHH
Confidence 67899999998875 555555555567 4999999997544 5555555555432249999999987541
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 80 ~~~G~iDilVnnA 92 (274)
T d1xhla_ 80 AKFGKIDILVNNA 92 (274)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHcCCceEEEeec
Confidence 15899999864
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=90.05 E-value=0.21 Score=45.43 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHH
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLK 387 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~ 387 (626)
+..+|+.+|+|. -++.+++.|...|+ +|+++|.++.....++
T Consensus 28 ~pa~VvViGaGv--aG~~Aa~~A~~lGA--~V~v~D~~~~~~~~l~ 69 (183)
T d1l7da1 28 PPARVLVFGVGV--AGLQAIATAKRLGA--VVMATDVRAATKEQVE 69 (183)
T ss_dssp CCCEEEEECCSH--HHHHHHHHHHHTTC--EEEEECSCSTTHHHHH
T ss_pred CCcEEEEEcCcH--HHHHHHHHHHHcCC--EEEEEeccHHHHHHHH
Confidence 457899999987 44456788888885 9999999986654443
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=89.81 E-value=0.38 Score=45.42 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=53.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--------
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-------- 411 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-------- 411 (626)
.+++++|.-|+++| ++...++...+.| .+|+.++.|+... .+.+.+... +.+ +..+.+|+++.+.
T Consensus 8 lenKvalITGas~G-IG~a~a~~la~~G--a~V~~~~r~~~~l~~~~~~l~~~--g~~-~~~~~~Dvt~~~~v~~~~~~~ 81 (251)
T d2c07a1 8 GENKVALVTGAGRG-IGREIAKMLAKSV--SHVICISRTQKSCDSVVDEIKSF--GYE-SSGYAGDVSKKEEISEVINKI 81 (251)
T ss_dssp CSSCEEEEESTTSH-HHHHHHHHHTTTS--SEEEEEESSHHHHHHHHHHHHTT--TCC-EEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhc--CCc-EEEEEccCCCHHHHHHHHHHH
Confidence 36789999999887 5555555555566 4999999997654 444444433 344 9999999987531
Q ss_pred ---CCCccEEEecc
Q psy17734 412 ---PEKADIMVSEL 422 (626)
Q Consensus 412 ---p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 82 ~~~~g~iDilvnna 95 (251)
T d2c07a1 82 LTEHKNVDILVNNA 95 (251)
T ss_dssp HHHCSCCCEEEECC
T ss_pred HHhcCCceeeeecc
Confidence 26899999854
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=89.00 E-value=0.3 Score=44.02 Aligned_cols=96 Identities=14% Similarity=0.169 Sum_probs=58.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCC-HHHHHHHHHHHHcCCCCCcEEEEEe---cccccC-------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN-MSAVVGLKYKKEEQWAQSDVTIVSE---DMRTWN------- 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~n-p~a~~a~~~~~~n~~~~~nV~vi~~---D~~~~~------- 410 (626)
++..|+.+++|+|.++.++++.++..|+ +|+++=-+ +......+..++.|-. . ++.. |..++.
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga--~vI~~v~~~~~~~~~~~~~~~lGad---~-vi~~~~~~~~~~~~~v~~~~ 101 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLNF--NSISVIRDRPNLDEVVASLKELGAT---Q-VITEDQNNSREFGPTIKEWI 101 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTC--EEEEEECCCTTHHHHHHHHHHHTCS---E-EEEHHHHHCGGGHHHHHHHH
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcCC--eEEEEEecccccchHHhhhhhcccc---E-EEeccccchhHHHHHHHHHH
Confidence 5667899999999999888999998885 78776433 2333333333334432 2 2222 222211
Q ss_pred --CCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 411 --APEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 411 --~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
....+|+++- .+| .+.+....+.|+++|.++-.
T Consensus 102 ~~~g~~vdvv~D-~vg--------~~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 102 KQSGGEAKLALN-CVG--------GKSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHTCCEEEEEE-SSC--------HHHHHHHHHTSCTTCEEEEC
T ss_pred hhccCCceEEEE-CCC--------cchhhhhhhhhcCCcEEEEE
Confidence 1256898873 221 23455666889999998844
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.84 E-value=0.53 Score=44.36 Aligned_cols=77 Identities=21% Similarity=0.115 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
+++++|.-|+++|+ +...++...+.| .+|+.++.++... .+.+.+....-+.+ +..+.+|+++.+.
T Consensus 2 ~GKvalITGas~GI-G~aia~~la~~G--a~V~i~~r~~~~~~~~~~~l~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~ 77 (254)
T d2gdza1 2 NGKVALVTGAAQGI-GRAFAEALLLKG--AKVALVDWNLEAGVQCKAALHEQFEPQK-TLFIQCDVADQQQLRDTFRKVV 77 (254)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHTTTSCGGG-EEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHhcCCCc-EEEEEeecCCHHHHHHHHHHHH
Confidence 46899999998775 555555555567 4999999997654 33333322222234 9999999987541
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 78 ~~~G~iDilVnnA 90 (254)
T d2gdza1 78 DHFGRLDILVNNA 90 (254)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHcCCcCeecccc
Confidence 15899999854
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=88.82 E-value=0.47 Score=44.80 Aligned_cols=75 Identities=16% Similarity=0.144 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHH-HHcCCCCCcEEEEEecccccCC--------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYK-KEEQWAQSDVTIVSEDMRTWNA-------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~-~~n~~~~~nV~vi~~D~~~~~~-------- 411 (626)
+++++|.-|+++|+ +...++...+.| .+|+.++.++... .+.+.+ ...+ .+ +..+.+|+.+.+.
T Consensus 4 ~gK~~lITGas~GI-G~aia~~la~~G--a~V~i~~r~~~~~~~~~~~l~~~~g--~~-~~~~~~Dv~~~~~v~~~~~~~ 77 (251)
T d1vl8a_ 4 RGRVALVTGGSRGL-GFGIAQGLAEAG--CSVVVASRNLEEASEAAQKLTEKYG--VE-TMAFRCDVSNYEEVKKLLEAV 77 (251)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHHC--CC-EEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHHhC--Cc-EEEEEccCCCHHHHHHHHHHH
Confidence 67899999998875 444555555567 4999999997544 333333 3333 44 8999999987531
Q ss_pred ---CCCccEEEecc
Q psy17734 412 ---PEKADIMVSEL 422 (626)
Q Consensus 412 ---p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 78 ~~~~g~iDiLVnnA 91 (251)
T d1vl8a_ 78 KEKFGKLDTVVNAA 91 (251)
T ss_dssp HHHHSCCCEEEECC
T ss_pred HHHcCCCCEEEECC
Confidence 15899999853
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.71 E-value=0.48 Score=45.15 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=54.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--------
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-------- 411 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-------- 411 (626)
.+++++|.-|+++|+ +...++...+.| .+|+.++.++... .+.+.+...+....++..+.+|+.+.+.
T Consensus 3 L~gK~alVTGas~GI-G~aia~~la~~G--a~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 79 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGI-GRTTAILFAQEG--ANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINST 79 (272)
T ss_dssp TTTCEEEETTCSSHH-HHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcHH-HHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHH
Confidence 467899999988764 444455555566 4999999998654 4555555554443349999999987531
Q ss_pred ---CCCccEEEec
Q psy17734 412 ---PEKADIMVSE 421 (626)
Q Consensus 412 ---p~k~DiIVSE 421 (626)
-.++|++|..
T Consensus 80 ~~~~g~iDilvnn 92 (272)
T d1xkqa_ 80 LKQFGKIDVLVNN 92 (272)
T ss_dssp HHHHSCCCEEEEC
T ss_pred HHHhCCceEEEeC
Confidence 1589999986
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=88.38 E-value=0.47 Score=45.47 Aligned_cols=77 Identities=12% Similarity=0.193 Sum_probs=53.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHH-HHcCCCCCcEEEEEecccccCC------
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYK-KEEQWAQSDVTIVSEDMRTWNA------ 411 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~-~~n~~~~~nV~vi~~D~~~~~~------ 411 (626)
..+++++|.-|+++| ++...++...+.| .+|+.++.++... .+.+.+ ... +.+ +.++.+|+.+.+.
T Consensus 22 ~l~gK~alITGas~G-IG~aiA~~la~~G--a~Vii~~r~~~~l~~~~~~l~~~~--g~~-~~~~~~D~~~~~~v~~~~~ 95 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTG-LGKGMTTLLSSLG--AQCVIASRKMDVLKATAEQISSQT--GNK-VHAIQCDVRDPDMVQNTVS 95 (294)
T ss_dssp TTTTCEEEEETTTSH-HHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHH--SSC-EEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCH-HHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHhc--CCc-eEEEEecccChHHHHHHhh
Confidence 357899999999776 5666666666667 4999999997543 333322 333 344 9999999987541
Q ss_pred -----CCCccEEEecc
Q psy17734 412 -----PEKADIMVSEL 422 (626)
Q Consensus 412 -----p~k~DiIVSEl 422 (626)
..++|++|...
T Consensus 96 ~~~~~~g~iDilvnnA 111 (294)
T d1w6ua_ 96 ELIKVAGHPNIVINNA 111 (294)
T ss_dssp HHHHHTCSCSEEEECC
T ss_pred hhhhhccccchhhhhh
Confidence 26899999854
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=88.25 E-value=0.82 Score=43.22 Aligned_cols=77 Identities=12% Similarity=0.077 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
+++++|.-|+++|+= ...++...+.| .+|+.++.++... .+.+.....+-+.+ +..+.+|+.+.+.
T Consensus 3 ~gK~alITGas~GIG-~aia~~la~~G--a~V~i~~r~~~~l~~~~~~~~~~~~~~~-~~~~~~Dvt~~~~v~~~~~~~~ 78 (258)
T d1iy8a_ 3 TDRVVLITGGGSGLG-RATAVRLAAEG--AKLSLVDVSSEGLEASKAAVLETAPDAE-VLTTVADVSDEAQVEAYVTATT 78 (258)
T ss_dssp TTCEEEEETTTSHHH-HHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHCTTCC-EEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHH-HHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhhCCCCe-EEEEeccCCCHHHHHHHHHHHH
Confidence 578999999988754 33344444456 4999999998654 44444444444455 9999999987531
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 79 ~~~G~iDiLVnnA 91 (258)
T d1iy8a_ 79 ERFGRIDGFFNNA 91 (258)
T ss_dssp HHHSCCSEEEECC
T ss_pred HHhCCCCEEEECC
Confidence 16899999863
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.69 E-value=0.68 Score=41.68 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=47.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC----CCCccEEE
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA----PEKADIMV 419 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~----p~k~DiIV 419 (626)
++|+.+|+ ||.++..+++...+.| .+|+++..++... ......+++++.+|+++.+. -..+|+||
T Consensus 4 kkIlV~Ga-tG~iG~~v~~~Ll~~g--~~V~~~~R~~~~~--------~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi 72 (205)
T d1hdoa_ 4 KKIAIFGA-TGQTGLTTLAQAVQAG--YEVTVLVRDSSRL--------PSEGPRPAHVVVGDVLQAADVDKTVAGQDAVI 72 (205)
T ss_dssp CEEEEEST-TSHHHHHHHHHHHHTT--CEEEEEESCGGGS--------CSSSCCCSEEEESCTTSHHHHHHHHTTCSEEE
T ss_pred CEEEEECC-CCHHHHHHHHHHHHCc--CEEEEEEcChhhc--------ccccccccccccccccchhhHHHHhcCCCEEE
Confidence 57898885 8888888777665556 5999999886321 11122259999999988642 15689998
Q ss_pred ec
Q psy17734 420 SE 421 (626)
Q Consensus 420 SE 421 (626)
+-
T Consensus 73 ~~ 74 (205)
T d1hdoa_ 73 VL 74 (205)
T ss_dssp EC
T ss_pred EE
Confidence 73
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=87.60 E-value=0.57 Score=44.82 Aligned_cols=66 Identities=15% Similarity=0.130 Sum_probs=46.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC--CCccEEEecc
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP--EKADIMVSEL 422 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p--~k~DiIVSEl 422 (626)
+|+|+-||-|.+..-+-+ +|. ..|.|+|.++.|..+.+. | +. -+++.+|++++... .++|+++.-.
T Consensus 2 k~~~lF~G~Gg~~~gl~~----aG~-~~~~a~e~d~~a~~~~~~---N-~~---~~~~~~Di~~~~~~~~~~~dll~~g~ 69 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQK----AGF-RIICANEYDKSIWKTYES---N-HS---AKLIKGDISKISSDEFPKCDGIIGGP 69 (324)
T ss_dssp EEEEESCSSCHHHHHHHH----HTC-EEEEEEECCHHHHHHHHH---H-CC---SEEEESCTTTSCGGGSCCCSEEEECC
T ss_pred eEEEeCcCcCHHHHHHHH----CCC-EEEEEEeCCHHHHHHHHH---H-CC---CCCccCChhhCCHhHcccccEEeecc
Confidence 699999999999854333 344 267799999988754432 2 22 34678999998643 4799998743
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=87.57 E-value=0.59 Score=44.38 Aligned_cols=74 Identities=12% Similarity=0.069 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
+++++|.-|+++|+ +...+++..+.| .+|+.++.++... .+.+.+. . .++ +.++.+|+.+.+.
T Consensus 5 ~gKvalITGas~GI-G~aia~~la~~G--a~V~i~~r~~~~~~~~~~~l~--~-~~~-~~~~~~Dv~~~~~v~~~~~~~~ 77 (268)
T d2bgka1 5 QDKVAIITGGAGGI-GETTAKLFVRYG--AKVVIADIADDHGQKVCNNIG--S-PDV-ISFVHCDVTKDEDVRNLVDTTI 77 (268)
T ss_dssp TTCEEEEESTTSHH-HHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHC--C-TTT-EEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhc--C-CCc-eEEEEccCCCHHHHHHHHHHHH
Confidence 67899999998874 555555555567 4999999997544 3333321 1 344 8899999987531
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 78 ~~~g~iD~lVnnA 90 (268)
T d2bgka1 78 AKHGKLDIMFGNV 90 (268)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHcCCcceecccc
Confidence 15899999753
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=87.55 E-value=0.97 Score=36.96 Aligned_cols=90 Identities=13% Similarity=0.068 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
++++||.+|+|. .+..-++.....|++..|++-+.++..... .. ..+ ++++....++-.+ ..+++++.-
T Consensus 11 ~~k~vlVvG~G~--va~~ka~~ll~~ga~v~v~~~~~~~~~~~~----~~---~~~-i~~~~~~~~~~dl-~~~~lv~~a 79 (113)
T d1pjqa1 11 RDRDCLIVGGGD--VAERKARLLLEAGARLTVNALTFIPQFTVW----AN---EGM-LTLVEGPFDETLL-DSCWLAIAA 79 (113)
T ss_dssp BTCEEEEECCSH--HHHHHHHHHHHTTBEEEEEESSCCHHHHHH----HT---TTS-CEEEESSCCGGGG-TTCSEEEEC
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCCeEEEEeccCChHHHHH----Hh---cCC-ceeeccCCCHHHh-CCCcEEeec
Confidence 568999999886 554445555566765555555555533211 11 123 8888766655444 467887762
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
. .+ ++.-..+.+..|+.|+.+
T Consensus 80 t----~d----~~~n~~i~~~a~~~~ilV 100 (113)
T d1pjqa1 80 T----DD----DTVNQRVSDAAESRRIFC 100 (113)
T ss_dssp C----SC----HHHHHHHHHHHHHTTCEE
T ss_pred C----CC----HHHHHHHHHHHHHcCCEE
Confidence 1 11 233334445556667665
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=87.53 E-value=1.9 Score=37.69 Aligned_cols=92 Identities=21% Similarity=0.219 Sum_probs=52.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEE-eccccc-------CCC
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVS-EDMRTW-------NAP 412 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~-~D~~~~-------~~p 412 (626)
.++.+|+.+|||- .+..++..++..|. .+|+++|.++.-....+ +.+- ..++. .+..+. ..+
T Consensus 27 k~GdtVlV~GaGG--~G~~~~~~~~~~g~-~~Vi~~~~~~~k~~~a~---~~Ga----~~~i~~~~~~~~~~~~~~~~~~ 96 (176)
T d2jhfa2 27 TQGSTCAVFGLGG--VGLSVIMGCKAAGA-ARIIGVDINKDKFAKAK---EVGA----TECVNPQDYKKPIQEVLTEMSN 96 (176)
T ss_dssp CTTCEEEEECCSH--HHHHHHHHHHHTTC-SEEEEECSCGGGHHHHH---HTTC----SEEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCEEEEECCCC--cHHHHHHHHHHcCC-ceEEeecCcHHHHHHHH---HhCC----eeEEecCCchhHHHHHHHHHhc
Confidence 3678999999973 34344555555665 49999999985442222 2232 22232 232222 123
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccC-cEEE
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKED-GISI 450 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~Lkpg-Gi~I 450 (626)
+.+|+++- .. ..+..++.+...++++ |+++
T Consensus 97 ~G~D~vid-~~-------G~~~~~~~a~~~~~~~~g~~~ 127 (176)
T d2jhfa2 97 GGVDFSFE-VI-------GRLDTMVTALSCCQEAYGVSV 127 (176)
T ss_dssp SCBSEEEE-CS-------CCHHHHHHHHHHBCTTTCEEE
T ss_pred CCCCEEEe-cC-------CchhHHHHHHHHHhcCCcceE
Confidence 67998864 22 2355666666777775 5544
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=87.01 E-value=1.9 Score=38.31 Aligned_cols=93 Identities=15% Similarity=0.089 Sum_probs=59.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC---CCCCccEEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN---APEKADIMV 419 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~---~p~k~DiIV 419 (626)
+..||..| |+|.++.++++.++..|+ +|+|+--++.-...++. .|- -.++.-+-.++. ....+|.+|
T Consensus 32 ~~~vlV~g-asGGVG~~aiQlAk~~Ga--~Via~~~~~~k~~~~~~---lGa----d~vi~~~~~~~~~~l~~~~~~~vv 101 (177)
T d1o89a2 32 DGEIVVTG-ASGGVGSTAVALLHKLGY--QVVAVSGRESTHEYLKS---LGA----SRVLPRDEFAESRPLEKQVWAGAI 101 (177)
T ss_dssp GCEEEESS-TTSHHHHHHHHHHHHTTC--CEEEEESCGGGHHHHHH---HTE----EEEEEGGGSSSCCSSCCCCEEEEE
T ss_pred CCcEEEEE-ccccchHHHHHHHHHcCC--CeEEEecchhHHHHHHh---hcc----ccccccccHHHHHHHHhhcCCeeE
Confidence 34787766 689999999999999995 89999888754432332 222 233443322222 124578765
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+.+| .+.+...-+.|+++|.++....
T Consensus 102 -D~Vg--------g~~~~~~l~~l~~~Griv~~G~ 127 (177)
T d1o89a2 102 -DTVG--------DKVLAKVLAQMNYGGCVAACGL 127 (177)
T ss_dssp -ESSC--------HHHHHHHHHTEEEEEEEEECCC
T ss_pred -EEcc--------hHHHHHHHHHhccccceEeecc
Confidence 3332 3457777788999999987643
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=86.92 E-value=0.77 Score=43.39 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=54.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
+++++|.-|+++|+ +...++...+.| .+|+.++.++... .+.+.+...+....++..+.+|+.+.+.
T Consensus 4 ~gKvalVTGas~GI-G~aia~~la~~G--a~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (264)
T d1spxa_ 4 AEKVAIITGSSNGI-GRATAVLFAREG--AKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL 80 (264)
T ss_dssp TTCEEEETTTTSHH-HHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCCHH-HHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHH
Confidence 67899999998775 444455555567 4999999997654 4555555554443349999999986531
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 81 ~~~g~iDilvnnA 93 (264)
T d1spxa_ 81 GKFGKLDILVNNA 93 (264)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHhCCCCEeeccc
Confidence 16899999863
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=86.74 E-value=0.81 Score=43.25 Aligned_cols=74 Identities=15% Similarity=0.105 Sum_probs=50.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
.+++++|.-|+++|+ +...++...+.| .+|+.++.++....... ..++++ +..+.+|+.+.+.
T Consensus 3 L~gK~alVTGas~GI-G~aia~~la~~G--a~V~~~~r~~~~~~~~~----~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~ 74 (254)
T d1hdca_ 3 LSGKTVIITGGARGL-GAEAARQAVAAG--ARVVLADVLDEEGAATA----RELGDA-ARYQHLDVTIEEDWQRVVAYAR 74 (254)
T ss_dssp CCCSEEEEETTTSHH-HHHHHHHHHHTT--CEEEEEESCHHHHHHHH----HTTGGG-EEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHH-HHHHHHHHHHCC--CEEEEEECCHHHHHHHH----HHhCCc-eEEEEcccCCHHHHHHHHHHHH
Confidence 468999999999884 444455555566 48999999975442211 223455 9999999987531
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 75 ~~~g~iDilVnnA 87 (254)
T d1hdca_ 75 EEFGSVDGLVNNA 87 (254)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHcCCccEEEecC
Confidence 15899999854
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.20 E-value=1.3 Score=42.76 Aligned_cols=78 Identities=13% Similarity=0.099 Sum_probs=53.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc---CCCCCcEEEEEecccccCC-----
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE---QWAQSDVTIVSEDMRTWNA----- 411 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n---~~~~~nV~vi~~D~~~~~~----- 411 (626)
.+++++|.-|+++|+ +...+++..+.| .+|+.++.++... .+.+.+..+ .-+.+ +..+.+|+.+.+.
T Consensus 10 L~gKvalITGas~GI-G~aia~~la~~G--a~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~-~~~~~~Dvs~~~~v~~~~ 85 (297)
T d1yxma1 10 LQGQVAIVTGGATGI-GKAIVKELLELG--SNVVIASRKLERLKSAADELQANLPPTKQAR-VIPIQCNIRNEEEVNNLV 85 (297)
T ss_dssp TTTCEEEEETTTSHH-HHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTSCTTCCCC-EEEEECCTTCHHHHHHHH
T ss_pred CCCCEEEEeCCCCHH-HHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhhhccccCce-EEEEeccCCCHHHHHHHH
Confidence 478999999988874 445555555567 4999999997544 333333332 22344 9999999987641
Q ss_pred ------CCCccEEEecc
Q psy17734 412 ------PEKADIMVSEL 422 (626)
Q Consensus 412 ------p~k~DiIVSEl 422 (626)
-.+.|++|..-
T Consensus 86 ~~~~~~~G~iDiLVnnA 102 (297)
T d1yxma1 86 KSTLDTFGKINFLVNNG 102 (297)
T ss_dssp HHHHHHHSCCCEEEECC
T ss_pred HHHHHHhCCeEEEEeec
Confidence 15899999864
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=86.10 E-value=2.1 Score=37.63 Aligned_cols=92 Identities=16% Similarity=0.089 Sum_probs=58.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-------CCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-------NAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-------~~p~k 414 (626)
++.+||..|+|. ..+.++++.++..|+ +|+++.-+++....++ ..+- -.++..+-.++ ..+..
T Consensus 29 ~G~~VlV~ga~g-gvG~~aiqlak~~Ga--~vi~~~~~~~~~~~~~---~~Ga----~~vi~~~~~~~~~~~~~~~~~~G 98 (182)
T d1v3va2 29 GGETVLVSAAAG-AVGSVVGQIAKLKGC--KVVGAAGSDEKIAYLK---QIGF----DAAFNYKTVNSLEEALKKASPDG 98 (182)
T ss_dssp SSCEEEESSTTS-HHHHHHHHHHHHTTC--EEEEEESSHHHHHHHH---HTTC----SEEEETTSCSCHHHHHHHHCTTC
T ss_pred CCCEEEEEeCCC-chhHHHHHHHHccCC--EEEEeCCCHHHHHHHH---hhhh----hhhcccccccHHHHHHHHhhcCC
Confidence 678999888754 455667888888884 9999998875442222 2332 22233222222 12467
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+|+++- ..| .+.++...+.|+++|.++-.
T Consensus 99 vd~v~D-~vG--------~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 99 YDCYFD-NVG--------GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp EEEEEE-SSC--------HHHHHHHGGGEEEEEEEEEC
T ss_pred CceeEE-ecC--------chhhhhhhhhccCCCeEEee
Confidence 999864 211 34677778899999988743
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=86.05 E-value=1.2 Score=41.91 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=51.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC----------
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA---------- 411 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~---------- 411 (626)
++++|.-|+++|+ +...+++..+.| .+|+.++.++... .+.+.++..+ .+ +..+.+|+++.+.
T Consensus 2 gKValITGas~GI-G~aia~~la~~G--a~V~i~~r~~~~l~~~~~~l~~~g--~~-~~~~~~Dvs~~~~v~~~~~~~~~ 75 (257)
T d2rhca1 2 SEVALVTGATSGI-GLEIARRLGKEG--LRVFVCARGEEGLRTTLKELREAG--VE-ADGRTCDVRSVPEIEALVAAVVE 75 (257)
T ss_dssp CCEEEEESCSSHH-HHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--CC-EEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHH-HHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcC--Cc-EEEEEeecCCHHHHHHHHHHHHH
Confidence 5788999988775 445555555567 4899999997654 4444444443 34 9999999987541
Q ss_pred -CCCccEEEec
Q psy17734 412 -PEKADIMVSE 421 (626)
Q Consensus 412 -p~k~DiIVSE 421 (626)
-.++|++|..
T Consensus 76 ~~g~iDilVnn 86 (257)
T d2rhca1 76 RYGPVDVLVNN 86 (257)
T ss_dssp HTCSCSEEEEC
T ss_pred HhCCCCEEEec
Confidence 1689999975
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.42 E-value=1.2 Score=42.00 Aligned_cols=74 Identities=18% Similarity=0.122 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC----------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---------- 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---------- 410 (626)
+++++|.-|+++|+ +...+++..+.| .+|+.++.|+... .+.+.+...+ .+ +..+.+|+.+-+
T Consensus 7 kgK~alVTGas~GI-G~aiA~~la~~G--a~V~~~~r~~~~l~~~~~~~~~~~--~~-~~~~~~Dv~~~~~v~~~~~~~~ 80 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGI-GHAIVEEFAGFG--AVIHTCARNEYELNECLSKWQKKG--FQ-VTGSVCDASLRPEREKLMQTVS 80 (259)
T ss_dssp TTCEEEETTTTSHH-HHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--CC-EEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcC--Cc-eEEEeccCCCHHHHHHHHHHHH
Confidence 67899999998775 555555555567 4999999997544 4444444443 34 999999987643
Q ss_pred --CCCCccEEEec
Q psy17734 411 --APEKADIMVSE 421 (626)
Q Consensus 411 --~p~k~DiIVSE 421 (626)
...++|++|..
T Consensus 81 ~~~~g~idilvnn 93 (259)
T d1xq1a_ 81 SMFGGKLDILINN 93 (259)
T ss_dssp HHHTTCCSEEEEE
T ss_pred HHhCCCccccccc
Confidence 12579999985
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=84.99 E-value=1.9 Score=37.59 Aligned_cols=91 Identities=8% Similarity=0.052 Sum_probs=55.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-------CCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-------NAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-------~~p~k 414 (626)
++.+||..|+|. .++.++++.++..|+ +|++++.++.-....+. .|- -+++..+-.++ .....
T Consensus 28 ~g~~Vlv~ga~g-~vG~~~iqlak~~Ga--~Vi~~~~s~~k~~~~~~---lGa----~~vi~~~~~d~~~~v~~~t~g~g 97 (179)
T d1qora2 28 PDEQFLFHAAAG-GVGLIACQWAKALGA--KLIGTVGTAQKAQSALK---AGA----WQVINYREEDLVERLKEITGGKK 97 (179)
T ss_dssp TTCEEEESSTTB-HHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHH---HTC----SEEEETTTSCHHHHHHHHTTTCC
T ss_pred CCCEEEEEcccc-ccchHHHHHHHHhCC--eEeecccchHHHHHHHh---cCC----eEEEECCCCCHHHHHHHHhCCCC
Confidence 567899987764 445556777777774 99999999865433322 232 12343222222 23467
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+|+++- ..| . +.+....+.++++|.++-
T Consensus 98 ~d~v~d-~~g----~----~~~~~~~~~l~~~G~~v~ 125 (179)
T d1qora2 98 VRVVYD-SVG----R----DTWERSLDCLQRRGLMVS 125 (179)
T ss_dssp EEEEEE-CSC----G----GGHHHHHHTEEEEEEEEE
T ss_pred eEEEEe-Ccc----H----HHHHHHHHHHhcCCeeee
Confidence 898765 222 1 245666778999997653
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.97 E-value=1.4 Score=41.33 Aligned_cols=73 Identities=21% Similarity=0.248 Sum_probs=50.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
.+++++|.-|+++|+ +...++...+.| .+|+.++.++....... +. .. ++..+.+|+++.+.
T Consensus 4 l~GK~alITGas~GI-G~aia~~la~~G--a~V~i~~r~~~~~~~~~---~~-~~--~~~~~~~Dvs~~~~v~~~~~~~~ 74 (250)
T d1ydea1 4 YAGKVVVVTGGGRGI-GAGIVRAFVNSG--ARVVICDKDESGGRALE---QE-LP--GAVFILCDVTQEDDVKTLVSETI 74 (250)
T ss_dssp TTTCEEEEETCSSHH-HHHHHHHHHHTT--CEEEEEESCHHHHHHHH---HH-CT--TEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHH-HHHHHHHHHHCC--CEEEEEECCHHHHHHHH---Hh-cC--CCeEEEccCCCHHHHHHHHHHHH
Confidence 368999999998874 445555555566 49999999976542222 11 22 38899999987541
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 75 ~~~g~iDilVnnA 87 (250)
T d1ydea1 75 RRFGRLDCVVNNA 87 (250)
T ss_dssp HHHSCCCEEEECC
T ss_pred HhcCCCCEEEecc
Confidence 16899999864
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=84.46 E-value=0.72 Score=44.53 Aligned_cols=68 Identities=18% Similarity=0.139 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC--CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP--EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p--~k~DiIV 419 (626)
.+.+|+|+-||-|.++.. .+.+|.+ .|.|+|.++.|..+.+.- . .+. .++|++++... ..+|+++
T Consensus 10 ~~lrv~~lFsG~Gg~~~g----l~~aG~~-~v~a~e~d~~a~~~~~~N-~---~~~----~~~Di~~~~~~~~~~~Dll~ 76 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLA----LESCGAE-CVYSNEWDKYAQEVYEMN-F---GEK----PEGDITQVNEKTIPDHDILC 76 (327)
T ss_dssp TTCEEEEETCTTTHHHHH----HHHTTCE-EEEEECCCHHHHHHHHHH-H---SCC----CBSCGGGSCGGGSCCCSEEE
T ss_pred CCCeEEEECccccHHHHH----HHHCCCe-EEEEEeCCHHHHHHHHHH-C---CCC----CcCchhcCchhhcceeeeee
Confidence 568999999999999853 3445543 678899999888555431 1 222 25888887643 4799998
Q ss_pred ecc
Q psy17734 420 SEL 422 (626)
Q Consensus 420 SEl 422 (626)
.-.
T Consensus 77 ggp 79 (327)
T d2c7pa1 77 AGF 79 (327)
T ss_dssp EEC
T ss_pred ccc
Confidence 754
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=84.07 E-value=0.71 Score=43.77 Aligned_cols=75 Identities=15% Similarity=0.099 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCH-H-HHHHHHHHHHcCCCCCcEEEEEecccccCC--------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNM-S-AVVGLKYKKEEQWAQSDVTIVSEDMRTWNA-------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np-~-a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~-------- 411 (626)
+++++|.-|+++|+ +...++...+.| .+|+.++.+. . +..+.+.++..+ .+ +..+.+|+.+.+.
T Consensus 6 ~gK~alITGas~GI-G~aia~~la~~G--~~Vv~~~r~~~~~~~~~~~~~~~~g--~~-~~~~~~Dvt~~~~v~~~~~~~ 79 (261)
T d1geea_ 6 EGKVVVITGSSTGL-GKSMAIRFATEK--AKVVVNYRSKEDEANSVLEEIKKVG--GE-AIAVKGDVTVESDVINLVQSA 79 (261)
T ss_dssp TTCEEEETTCSSHH-HHHHHHHHHHTT--CEEEEEESSCHHHHHHHHHHHHHTT--CE-EEEEECCTTSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHHCC--CEEEEEeCCcHHHHHHHHHHHHhcC--Cc-EEEEEccCCCHHHHHHHHHHH
Confidence 67899999999885 555555555566 4899999874 3 334444444443 34 9999999987531
Q ss_pred ---CCCccEEEecc
Q psy17734 412 ---PEKADIMVSEL 422 (626)
Q Consensus 412 ---p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 80 ~~~~G~iDiLVnnA 93 (261)
T d1geea_ 80 IKEFGKLDVMINNA 93 (261)
T ss_dssp HHHHSCCCEEEECC
T ss_pred HHHhCCCCEeeccc
Confidence 15899999864
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=83.75 E-value=0.73 Score=42.50 Aligned_cols=42 Identities=17% Similarity=0.059 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHH
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYK 389 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~ 389 (626)
++.+|||--||+|.-+ .||.+.|+ +-+|+|+++..+ +|.+.+
T Consensus 212 ~gd~VlDpF~GSGTT~----~aa~~~~R--~~ig~El~~~y~~~a~~Rl 254 (256)
T d1g60a_ 212 PNDLVLDCFMGSGTTA----IVAKKLGR--NFIGCDMNAEYVNQANFVL 254 (256)
T ss_dssp TTCEEEESSCTTCHHH----HHHHHTTC--EEEEEESCHHHHHHHHHHH
T ss_pred CCCEEEECCCCchHHH----HHHHHcCC--eEEEEeCCHHHHHHHHHHH
Confidence 6789999999999987 45555664 999999999776 666554
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=83.73 E-value=1.3 Score=44.12 Aligned_cols=79 Identities=15% Similarity=0.230 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcC---CccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEAN---RKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g---~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiI 418 (626)
+...|+++|+|+|.|+.-.++..+... ...+++.||+|+......+... ..+ . +|+.+ .+..+++ ...-+|
T Consensus 79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l-~~~-~-~i~w~-~~~~~~~--~~~g~i 152 (365)
T d1zkda1 79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL-AGI-R-NIHWH-DSFEDVP--EGPAVI 152 (365)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS-TTC-S-SEEEE-SSGGGSC--CSSEEE
T ss_pred ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHh-ccc-c-cceec-cChhhcc--cCCeEE
Confidence 345899999999999866555543211 2357999999997654443321 222 2 26543 3444443 233456
Q ss_pred Ee-cccccc
Q psy17734 419 VS-ELLGSF 426 (626)
Q Consensus 419 VS-Ellgsf 426 (626)
+| |+++.+
T Consensus 153 iaNE~fDAl 161 (365)
T d1zkda1 153 LANEYFDVL 161 (365)
T ss_dssp EEESSGGGS
T ss_pred EecccCccc
Confidence 66 555544
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.54 E-value=0.59 Score=45.21 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=47.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCcc-EEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC----CCccE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKV-RVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP----EKADI 417 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~-~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p----~k~Di 417 (626)
..+|+|+-||.|.++..+-+ +|.+. -|.|+|.++.|..+.+. | +. +..++.+|++++... ..+|+
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~----aG~~~~~~~a~E~~~~a~~~~~~---n-~~--~~~~~~~di~~~~~~~~~~~~~Dl 71 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRE----SCIPAQVVAAIDVNTVANEVYKY---N-FP--HTQLLAKTIEGITLEEFDRLSFDM 71 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHH----HTCSEEEEEEECCCHHHHHHHHH---H-CT--TSCEECSCGGGCCHHHHHHHCCSE
T ss_pred CCEEEEcCcCccHHHHHHHH----cCCCCeEEEEEECCHHHHHHHHH---H-CC--CCCcccCchhhCCHhHcCCCCccE
Confidence 35799999999998753222 34322 37899999988755443 2 22 366788899987642 37999
Q ss_pred EEecc
Q psy17734 418 MVSEL 422 (626)
Q Consensus 418 IVSEl 422 (626)
++.-.
T Consensus 72 l~ggp 76 (343)
T d1g55a_ 72 ILMSP 76 (343)
T ss_dssp EEECC
T ss_pred EEeec
Confidence 98754
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=83.38 E-value=0.69 Score=43.65 Aligned_cols=77 Identities=23% Similarity=0.167 Sum_probs=51.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHH-HH-HHHHHHHHcCCCCCcEEEEEecccccCC------
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMS-AV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA------ 411 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~-a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~------ 411 (626)
.++++++|.-|+++|+ +...++...+.| .+|+.++.++. .. .+.+..+..+ .+ +..+.+|+.+.+.
T Consensus 6 ~l~gK~alITGas~GI-G~aia~~la~~G--a~V~i~~r~~~~~~~~~~~~~~~~g--~~-~~~~~~Dv~~~~~v~~~~~ 79 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGI-GLAFTRAVAAAG--ANVAVIYRSAADAVEVTEKVGKEFG--VK-TKAYQCDVSNTDIVTKTIQ 79 (260)
T ss_dssp CCTTEEEEEETTTSHH-HHHHHHHHHHTT--EEEEEEESSCTTHHHHHHHHHHHHT--CC-EEEEECCTTCHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHH-HHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHHHhC--Cc-eEEEEccCCCHHHHHHHHH
Confidence 3578999999987764 444455555566 48999999863 32 3333333333 44 9999999987541
Q ss_pred -----CCCccEEEecc
Q psy17734 412 -----PEKADIMVSEL 422 (626)
Q Consensus 412 -----p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 80 ~~~~~~g~iDilVnnA 95 (260)
T d1h5qa_ 80 QIDADLGPISGLIANA 95 (260)
T ss_dssp HHHHHSCSEEEEEECC
T ss_pred HHHHHhCCCcEecccc
Confidence 16899999864
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=83.35 E-value=0.61 Score=44.47 Aligned_cols=42 Identities=12% Similarity=-0.010 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHH
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYK 389 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~ 389 (626)
++.+|||--||+|.-+. ||...|+ +.+|+|+++.++ ++++.+
T Consensus 250 ~gdiVlDpF~GSGTT~~----AA~~lgR--~~Ig~El~~~y~~~a~~Rl 292 (320)
T d1booa_ 250 PDDLVVDIFGGSNTTGL----VAERESR--KWISFEMKPEYVAASAFRF 292 (320)
T ss_dssp TTCEEEETTCTTCHHHH----HHHHTTC--EEEEEESCHHHHHHHHGGG
T ss_pred CCCEEEecCCCCcHHHH----HHHHcCC--cEEEEeCCHHHHHHHHHHH
Confidence 67899999999999874 5555664 999999999877 554443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=83.26 E-value=1.8 Score=37.40 Aligned_cols=89 Identities=18% Similarity=0.115 Sum_probs=52.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEecccc
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLG 424 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllg 424 (626)
+|..||+| .++...+++.++.| .+|++.|.++..... .++.+..+ ....+.+.+ ..+|+||.-..
T Consensus 2 kI~iIG~G--~mG~~lA~~l~~~g--~~V~~~d~~~~~~~~---a~~~~~~~----~~~~~~~~~---~~~DiIilavp- 66 (165)
T d2f1ka2 2 KIGVVGLG--LIGASLAGDLRRRG--HYLIGVSRQQSTCEK---AVERQLVD----EAGQDLSLL---QTAKIIFLCTP- 66 (165)
T ss_dssp EEEEECCS--HHHHHHHHHHHHTT--CEEEEECSCHHHHHH---HHHTTSCS----EEESCGGGG---TTCSEEEECSC-
T ss_pred EEEEEeec--HHHHHHHHHHHHCC--CEEEEEECCchHHHH---HHHhhccc----eeeeecccc---cccccccccCc-
Confidence 57888876 45544455555556 599999999765422 22333322 222233222 57899876321
Q ss_pred ccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 425 SFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 425 sfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+...++++.+...|+++.+++-.
T Consensus 67 ----~~~~~~vl~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 67 ----IQLILPTLEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp ----HHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred ----Hhhhhhhhhhhhhhcccccceeec
Confidence 112356777777778888887754
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=83.11 E-value=0.56 Score=44.60 Aligned_cols=81 Identities=16% Similarity=0.101 Sum_probs=58.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcC------------------------------------CccEEEEEeCCHHHH-H
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEAN------------------------------------RKVRVYAVEKNMSAV-V 384 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g------------------------------------~~~~V~AVE~np~a~-~ 384 (626)
++..++|--||+|.|...++..+.... ...+++|.|.++.++ .
T Consensus 50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~ 129 (249)
T d1o9ga_ 50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 129 (249)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence 456799999999999877665432110 013567888887776 3
Q ss_pred H---HHHHHHcCCCCCcEEEEEecccccC------CCCCccEEEeccc
Q psy17734 385 G---LKYKKEEQWAQSDVTIVSEDMRTWN------APEKADIMVSELL 423 (626)
Q Consensus 385 a---~~~~~~n~~~~~nV~vi~~D~~~~~------~p~k~DiIVSEll 423 (626)
+ +++++..++.+. |++...|..+.. .+...++||+++.
T Consensus 130 A~~~r~n~~~Agl~~~-i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPP 176 (249)
T d1o9ga_ 130 ARRLRERLTAEGGALP-CAIRTADVFDPRALSAVLAGSAPDVVLTDLP 176 (249)
T ss_dssp HHHHHHHHHHTTSSCC-EEEEECCTTCGGGHHHHHTTCCCSEEEEECC
T ss_pred HHHHHHHHHHcCCCce-eeeeecchhccCcchhccCCCCCCEEEeCCC
Confidence 4 346677888888 999999987654 3467899999985
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=82.84 E-value=1.8 Score=40.57 Aligned_cols=75 Identities=17% Similarity=0.100 Sum_probs=52.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--------
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-------- 411 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-------- 411 (626)
.+++++|.-|+++|+ +...++...+.| .+|+.++.++... .+.+.++.. +.+ +..+.+|+.+.+.
T Consensus 3 L~gK~alITGas~GI-G~aia~~la~~G--a~V~~~~r~~~~l~~~~~~~~~~--g~~-~~~~~~Dv~~~~~v~~~~~~~ 76 (260)
T d1zema1 3 FNGKVCLVTGAGGNI-GLATALRLAEEG--TAIALLDMNREALEKAEASVREK--GVE-ARSYVCDVTSEEAVIGTVDSV 76 (260)
T ss_dssp TTTCEEEEETTTSHH-HHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHTT--TSC-EEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHH-HHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhc--CCc-EEEEEccCCCHHHHHHHHHHH
Confidence 367899999988775 444455555566 4899999998655 444444433 344 9999999987531
Q ss_pred ---CCCccEEEec
Q psy17734 412 ---PEKADIMVSE 421 (626)
Q Consensus 412 ---p~k~DiIVSE 421 (626)
-.++|++|..
T Consensus 77 ~~~~g~iDilVnn 89 (260)
T d1zema1 77 VRDFGKIDFLFNN 89 (260)
T ss_dssp HHHHSCCCEEEEC
T ss_pred HHHhCCCCeehhh
Confidence 1689999975
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.78 E-value=2 Score=38.20 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=55.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC------CCCCcc
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN------APEKAD 416 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~------~p~k~D 416 (626)
+.+||.-|+ +|..+.++++.++..|++ .|+++..++.....+. +..+- -.++...-.++. .++.+|
T Consensus 31 ~etVLI~ga-aGgVG~~aiQlak~~Ga~-~vi~~~~~~e~~~~l~--~~~ga----d~vi~~~~~~~~~~~~~~~~~GvD 102 (187)
T d1vj1a2 31 NQTMVVSGA-AGACGSLAGQIGHLLGCS-RVVGICGTQEKCLFLT--SELGF----DAAVNYKTGNVAEQLREACPGGVD 102 (187)
T ss_dssp CCEEEESST-TSTTGGGHHHHHHHTTCS-EEEEEESSHHHHHHHH--HHSCC----SEEEETTSSCHHHHHHHHCTTCEE
T ss_pred CCEEEEECC-CchhhHHHHHHHHHcCCc-ceecccchHHHHhhhh--hcccc----eEEeeccchhHHHHHHHHhccCce
Confidence 367888775 344555557888878863 7888777764432221 12222 233333222221 246799
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+++- ..| .+.++...+.|+++|.++-.
T Consensus 103 vv~D-~vG--------g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 103 VYFD-NVG--------GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp EEEE-SSC--------HHHHHHHHTTEEEEEEEEEC
T ss_pred EEEe-cCC--------chhHHHHhhhccccccEEEe
Confidence 9974 222 34677788899999998754
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.54 E-value=1.3 Score=41.46 Aligned_cols=74 Identities=14% Similarity=0.085 Sum_probs=50.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
.+++++|.-|+++|+ +...++...+.| .+|+.++.++.....+. ..++++ +..+.+|+.+.+.
T Consensus 4 L~gK~alITGas~GI-G~aia~~la~~G--~~V~~~~r~~~~~~~~~----~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~ 75 (244)
T d1nffa_ 4 LTGKVALVSGGARGM-GASHVRAMVAEG--AKVVFGDILDEEGKAMA----AELADA-ARYVHLDVTQPAQWKAAVDTAV 75 (244)
T ss_dssp TTTCEEEEETTTSHH-HHHHHHHHHHTT--CEEEEEESCHHHHHHHH----HHTGGG-EEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHH-HHHHHHHHHHCC--CEEEEEECCHHHHHHHH----HHhhCc-ceEEEeecCCHHHHHHHHHHHH
Confidence 467899999998875 555555555566 49999999985442221 112344 8999999987531
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 76 ~~~g~idilinnA 88 (244)
T d1nffa_ 76 TAFGGLHVLVNNA 88 (244)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHhCCCeEEEECC
Confidence 15799999753
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.44 E-value=1.7 Score=40.35 Aligned_cols=72 Identities=26% Similarity=0.440 Sum_probs=48.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC-------CC
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA-------PE 413 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~-------p~ 413 (626)
.+++++|.-|+++| ++...++...+.| .+|+.++.++....... +. .. +++.+..|+.+.+. -+
T Consensus 3 l~GK~alITGas~G-IG~aia~~la~~G--a~V~~~~r~~~~l~~~~---~~-~~--~~~~~~~Dv~~~~~v~~~~~~~g 73 (242)
T d1cyda_ 3 FSGLRALVTGAGKG-IGRDTVKALHASG--AKVVAVTRTNSDLVSLA---KE-CP--GIEPVCVDLGDWDATEKALGGIG 73 (242)
T ss_dssp CTTCEEEEESTTSH-HHHHHHHHHHHTT--CEEEEEESCHHHHHHHH---HH-ST--TCEEEECCTTCHHHHHHHHTTCC
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHH---Hh-cC--CCeEEEEeCCCHHHHHHHHHHcC
Confidence 46789999999887 4555555555566 49999999975432221 11 12 38888999886531 26
Q ss_pred CccEEEec
Q psy17734 414 KADIMVSE 421 (626)
Q Consensus 414 k~DiIVSE 421 (626)
++|++|..
T Consensus 74 ~iDilVnn 81 (242)
T d1cyda_ 74 PVDLLVNN 81 (242)
T ss_dssp CCSEEEEC
T ss_pred CCeEEEEC
Confidence 89999975
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.14 E-value=2.5 Score=39.35 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=52.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--------
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-------- 411 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-------- 411 (626)
-.++++|.-|+++|+=-.. ++..++.| .+|+.++.|+... .+.+.+... +.+ +..+.+|+.+.+.
T Consensus 5 l~Gkv~lITGas~GIG~~i-a~~la~~G--~~V~l~~r~~~~l~~~~~~~~~~--~~~-~~~~~~Dvs~~~~v~~~~~~i 78 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLT-AYEFAKLK--SKLVLWDINKHGLEETAAKCKGL--GAK-VHTFVVDCSNREDIYSSAKKV 78 (244)
T ss_dssp CTTCEEEEETTTSHHHHHH-HHHHHHTT--CEEEEEESCHHHHHHHHHHHHHT--TCC-EEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHH-HHHHHHCC--CEEEEEECCHHHHHHHHHHHHhc--CCc-EEEEEeeCCCHHHHHHHHHHH
Confidence 4678999999999865443 34444456 4999999998644 444444433 344 9999999998641
Q ss_pred ---CCCccEEEecc
Q psy17734 412 ---PEKADIMVSEL 422 (626)
Q Consensus 412 ---p~k~DiIVSEl 422 (626)
-+++|++|..-
T Consensus 79 ~~~~g~idilinna 92 (244)
T d1yb1a_ 79 KAEIGDVSILVNNA 92 (244)
T ss_dssp HHHTCCCSEEEECC
T ss_pred HHHcCCCceeEeec
Confidence 26799998754
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=81.56 E-value=1.3 Score=41.33 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC----------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA---------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~---------- 411 (626)
+++++|.-|+++| ++...++...+.| .+|+.++.++....... +.. +++.+.+|+.+.+.
T Consensus 4 ~gK~~lITGas~G-IG~aia~~l~~~G--~~V~~~~r~~~~l~~~~----~~~---~~~~~~~Dv~~~~~v~~~~~~~~~ 73 (242)
T d1ulsa_ 4 KDKAVLITGAAHG-IGRATLELFAKEG--ARLVACDIEEGPLREAA----EAV---GAHPVVMDVADPASVERGFAEALA 73 (242)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTT--CEEEEEESCHHHHHHHH----HTT---TCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCC--CEEEEEECCHHHHHHHH----HHc---CCeEEEEecCCHHHHHHHHHHHHH
Confidence 5789999999888 5555556655567 49999999975442111 222 37788999887531
Q ss_pred -CCCccEEEec
Q psy17734 412 -PEKADIMVSE 421 (626)
Q Consensus 412 -p~k~DiIVSE 421 (626)
-.++|++|..
T Consensus 74 ~~g~iDilVnn 84 (242)
T d1ulsa_ 74 HLGRLDGVVHY 84 (242)
T ss_dssp HHSSCCEEEEC
T ss_pred hcCCceEEEEC
Confidence 1579999975
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=81.15 E-value=3.7 Score=38.35 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC----------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---------- 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---------- 410 (626)
+++++|.-|+++|+ +...++...+.| .+|+.++.|+... .+.+.+...+ . ++..+.+|+.+.+
T Consensus 7 ~GK~alITGas~GI-G~aia~~la~~G--a~V~~~~r~~~~l~~~~~~~~~~g--~-~~~~~~~Dv~~~~~v~~~~~~~~ 80 (259)
T d2ae2a_ 7 EGCTALVTGGSRGI-GYGIVEELASLG--ASVYTCSRNQKELNDCLTQWRSKG--F-KVEASVCDLSSRSERQELMNTVA 80 (259)
T ss_dssp TTCEEEEESCSSHH-HHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--C-EEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcC--C-CceEEEeeCCCHHHHHHHHHHHH
Confidence 67899999998775 444455555566 4899999997654 4444444443 3 4899999997643
Q ss_pred --CCCCccEEEec
Q psy17734 411 --APEKADIMVSE 421 (626)
Q Consensus 411 --~p~k~DiIVSE 421 (626)
...++|++|..
T Consensus 81 ~~~~~~idilvnn 93 (259)
T d2ae2a_ 81 NHFHGKLNILVNN 93 (259)
T ss_dssp HHTTTCCCEEEEC
T ss_pred HHhCCCceEEEEC
Confidence 12379999985
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=81.12 E-value=2.7 Score=36.39 Aligned_cols=91 Identities=18% Similarity=0.115 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC--------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN--------APE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~--------~p~ 413 (626)
++.+|+.+|+|.+.+. ++..++..+. .+|+++|.++.-....+ +.|- -.+|+.+-++.. ...
T Consensus 28 ~g~~VlI~G~Gg~g~~--~~~~~~~~g~-~~Vi~~~~~~~rl~~a~---~~GA----d~~in~~~~~~~~~~~~~~~~~~ 97 (175)
T d1cdoa2 28 PGSTCAVFGLGAVGLA--AVMGCHSAGA-KRIIAVDLNPDKFEKAK---VFGA----TDFVNPNDHSEPISQVLSKMTNG 97 (175)
T ss_dssp TTCEEEEECCSHHHHH--HHHHHHHTTC-SEEEEECSCGGGHHHHH---HTTC----CEEECGGGCSSCHHHHHHHHHTS
T ss_pred CCCEEEEEecCCccch--HHHHHHHHhh-chheeecchHHHHHHHH---HcCC----cEEEcCCCcchhHHHHHHhhccC
Confidence 6789999998875544 3444444555 49999999986442222 2232 234432222111 125
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccC-cEEE
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKED-GISI 450 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~Lkpg-Gi~I 450 (626)
.+|+++- .. ..++.+..+.+.++++ |+++
T Consensus 98 G~d~vid-~~-------G~~~~~~~a~~~~~~g~~~~~ 127 (175)
T d1cdoa2 98 GVDFSLE-CV-------GNVGVMRNALESCLKGWGVSV 127 (175)
T ss_dssp CBSEEEE-CS-------CCHHHHHHHHHTBCTTTCEEE
T ss_pred Ccceeee-ec-------CCHHHHHHHHHHhhCCCccee
Confidence 6898864 22 2344566666666665 5443
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=80.95 E-value=3.5 Score=38.49 Aligned_cols=74 Identities=23% Similarity=0.244 Sum_probs=50.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC----------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---------- 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---------- 410 (626)
++++||..|+.+|+ +...++..++.| .+|+.++.|+... .+.+.....+ . ++.++.+|+.+.+
T Consensus 5 ~gK~alITGas~GI-G~aia~~la~~G--~~V~i~~r~~~~l~~~~~~~~~~~--~-~~~~~~~D~s~~~~~~~~~~~~~ 78 (258)
T d1ae1a_ 5 KGTTALVTGGSKGI-GYAIVEELAGLG--ARVYTCSRNEKELDECLEIWREKG--L-NVEGSVCDLLSRTERDKLMQTVA 78 (258)
T ss_dssp TTCEEEEESCSSHH-HHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT--C-CEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHH-HHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcC--C-CceEEEeecCCHHHHHHHHHHHH
Confidence 57899999998764 444444444456 4999999997543 4455554444 3 3889999998753
Q ss_pred --CCCCccEEEec
Q psy17734 411 --APEKADIMVSE 421 (626)
Q Consensus 411 --~p~k~DiIVSE 421 (626)
...+.|++|..
T Consensus 79 ~~~~g~idilinn 91 (258)
T d1ae1a_ 79 HVFDGKLNILVNN 91 (258)
T ss_dssp HHTTSCCCEEEEC
T ss_pred HHhCCCcEEEecc
Confidence 12578998874
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=80.83 E-value=1.3 Score=41.15 Aligned_cols=43 Identities=16% Similarity=0.023 Sum_probs=33.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHH
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKK 390 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~ 390 (626)
++.+|||--||+|.-+. ||.+.|+ +.+++|+++... ++++.+.
T Consensus 207 ~gdiVLDpF~GSGTT~~----Aa~~lgR--~~ig~El~~~y~~~a~~Ri~ 250 (279)
T d1eg2a_ 207 PGSTVLDFFAGSGVTAR----VAIQEGR--NSICTDAAPVFKEYYQKQLT 250 (279)
T ss_dssp TTCEEEETTCTTCHHHH----HHHHHTC--EEEEEESSTHHHHHHHHHHH
T ss_pred CCCEEEecCCCCcHHHH----HHHHhCC--eEEEEeCCHHHHHHHHHHHH
Confidence 67899999999999874 4455564 999999999876 5555543
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=80.26 E-value=2.2 Score=39.60 Aligned_cols=73 Identities=15% Similarity=0.132 Sum_probs=49.5
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH-HHHHHcCCCCCcEEEEEecccccCC--------
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL-KYKKEEQWAQSDVTIVSEDMRTWNA-------- 411 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~-~~~~~n~~~~~nV~vi~~D~~~~~~-------- 411 (626)
.+++++|.-|+++|+ +...++...+.| .+|+.++.++.....+ +.. +.+ +..+.+|+++.+.
T Consensus 2 l~gK~alITGas~GI-G~a~a~~l~~~G--~~Vv~~~r~~~~l~~~~~~~-----~~~-~~~~~~Dv~~~~~v~~~~~~~ 72 (243)
T d1q7ba_ 2 FEGKIALVTGASRGI-GRAIAETLAARG--AKVIGTATSENGAQAISDYL-----GAN-GKGLMLNVTDPASIESVLEKI 72 (243)
T ss_dssp CTTCEEEESSCSSHH-HHHHHHHHHHTT--CEEEEEESSHHHHHHHHHHH-----GGG-EEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHH-HHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHh-----CCC-CcEEEEEecCHHHhhhhhhhh
Confidence 367899999998875 444455555566 4999999998654222 222 233 8889999887531
Q ss_pred ---CCCccEEEecc
Q psy17734 412 ---PEKADIMVSEL 422 (626)
Q Consensus 412 ---p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 73 ~~~~g~iDilVnnA 86 (243)
T d1q7ba_ 73 RAEFGEVDILVNNA 86 (243)
T ss_dssp HHHTCSCSEEEECC
T ss_pred hcccCCcceehhhh
Confidence 15899999753
|