Psyllid ID: psy17759

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
KNAKFYIKVVEVRECLSVSDFSSVFPRLCLTSMADSGKRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRESNFFKTSTRCVPYLFD
Secondary Structure (PSIPRED)
cccEEEEEEEEEEEcccccccccccHHHHHHcccccccccccccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEEEEcEccccccccccEEEcccHHcccccccEcccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccccEccc
Coil and Loop (DISEMBL)
KNAKFYIKVVEVREClsvsdfssvfprLCLTsmadsgkrnipiklgdfsvidsEFSNIRERFDAEMRKMEDEMTKFRSELMNREsnffktstrcvpylfd
Flexible Loop (DISEMBL)
knakfyikvvevreclsvsdfssvfpRLCLTSmadsgkrnipiklgdfsvidsefsnIRERFDAEMRKMEDEMTKFRSelmnresnffktstrcvpylfd
Low Complexity Region (SEG)
KNAKFYIKVVEVRECLSVSDFSSVFPRLCLTSMADSGKRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRESNFFKTSTRCVPYLFD
Disordered region (IsUnstruct)
***KFYIKVVEVRECLSVSDFSSVFPRLCLTSMADSGKRNIPIKLGDFSVIDSEFSN**********************************TRCVPY***
Disordered Region (DISOPRED)
***KFYIKVVEVRECLSVSDFSSVFPRLCLTS*********PIKLGDFSVIDSEFSNIRER******************************TR****LFD
Disordered Region (DISEMBL)
KNAKFYIKVVEVRECLSVSDFSSVFPRLCLTSMADSGKRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRESNFFKTSTRCVPYLFD
Disordered Region (DISPRO)
KNAKFYIKVVEVRECLSVSDFSSVFPRLCLTSMADSGKRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRESNFFKTSTRCVPYLFD
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
KNAKFYIKVVEVRECLSVSDFSSVFPRLCLTSMADSGKRNIPIKLGDFSVIDSEFSNIxxxxxxxxxxxxxxxxxxxxxxxxxxxxFFKTSTRCVPYLFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
350417744	258	PREDICTED: heat shock protein beta-1-lik	0.61	0.236	0.888	3e-23
423292693	190	21.5 kDa heat shock protein [Lygus hespe	0.57	0.3	0.931	8e-23
340729372	258	PREDICTED: heat shock protein beta-1-lik	0.6	0.232	0.887	1e-22
307183305	259	Heat shock protein beta-1 [Camponotus fl	0.6	0.231	0.887	1e-22
340729370	228	PREDICTED: heat shock protein beta-1-lik	0.6	0.263	0.887	1e-22
350417746	193	PREDICTED: heat shock protein beta-1-lik	0.62	0.321	0.859	1e-22
110757651	227	PREDICTED: heat shock protein beta-1-lik	0.6	0.264	0.887	1e-22
193618013	203	PREDICTED: alpha-crystallin B chain-like	0.57	0.280	0.894	1e-22
340729374	193	PREDICTED: heat shock protein beta-1-lik	0.6	0.310	0.887	2e-22
156545575	190	PREDICTED: heat shock protein beta-6-lik	0.57	0.3	0.931	2e-22

>gi|350417744|ref|XP_003491573.1| PREDICTED: heat shock protein beta-1-like isoform 3 [Bombus impatiens]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/63 (88%), Positives = 61/63 (96%), Gaps = 2/63 (3%)

Query: 33 MADSG-KRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRES-NFFKT 90
          MADSG KRNIPIKLGDFSVID+EFSNIRERFDAEMRKMEDEM++FRSELMNRES NFFK+
Sbjct: 1  MADSGIKRNIPIKLGDFSVIDTEFSNIRERFDAEMRKMEDEMSRFRSELMNRESNNFFKS 60

Query: 91 STR 93
          +TR
Sbjct: 61 TTR 63

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|423292693|gb|AFX84563.1| 21.5 kDa heat shock protein [Lygus hesperus]

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 54/58 (93%), Positives = 56/58 (96%), Gaps = 1/58 (1%)

Query: 33 MADSG-KRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRESNFFK 89
          MAD G KRNIPIKLGDFSVID+EFSNIRERFDAEMRKMEDEMT+FRSELMNRESNFFK
Sbjct: 1  MADQGVKRNIPIKLGDFSVIDTEFSNIRERFDAEMRKMEDEMTRFRSELMNRESNFFK 58

Source: Lygus hesperus

Species: Lygus hesperus

Genus: Lygus

Family: Miridae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729372|ref|XP_003402978.1| PREDICTED: heat shock protein beta-1-like isoform 3 [Bombus terrestris]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/62 (88%), Positives = 60/62 (96%), Gaps = 2/62 (3%)

Query: 33 MADSG-KRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRES-NFFKT 90
          MADSG KRNIPIKLGDFSVID+EFSNIRERFDAEMRKMEDEM++FRSELMNRES NFFK+
Sbjct: 1  MADSGIKRNIPIKLGDFSVIDTEFSNIRERFDAEMRKMEDEMSRFRSELMNRESNNFFKS 60

Query: 91 ST 92
          +T
Sbjct: 61 TT 62

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183305|gb|EFN70174.1| Heat shock protein beta-1 [Camponotus floridanus]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/62 (88%), Positives = 60/62 (96%), Gaps = 2/62 (3%)

Query: 33 MADSG-KRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRES-NFFKT 90
          MADSG KRNIPIKLGDFSVID+EFSNIRERFDAEMRKMEDEM++FRSELMNRES NFFK+
Sbjct: 1  MADSGIKRNIPIKLGDFSVIDTEFSNIRERFDAEMRKMEDEMSRFRSELMNRESNNFFKS 60

Query: 91 ST 92
          +T
Sbjct: 61 TT 62

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729370|ref|XP_003402977.1| PREDICTED: heat shock protein beta-1-like isoform 2 [Bombus terrestris] gi|350417742|ref|XP_003491572.1| PREDICTED: heat shock protein beta-1-like isoform 2 [Bombus impatiens]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/62 (88%), Positives = 60/62 (96%), Gaps = 2/62 (3%)

Query: 33 MADSG-KRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRES-NFFKT 90
          MADSG KRNIPIKLGDFSVID+EFSNIRERFDAEMRKMEDEM++FRSELMNRES NFFK+
Sbjct: 1  MADSGIKRNIPIKLGDFSVIDTEFSNIRERFDAEMRKMEDEMSRFRSELMNRESNNFFKS 60

Query: 91 ST 92
          +T
Sbjct: 61 TT 62

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417746|ref|XP_003491574.1| PREDICTED: heat shock protein beta-1-like isoform 4 [Bombus impatiens]

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/64 (85%), Positives = 60/64 (93%), Gaps = 2/64 (3%)

Query: 33 MADSG-KRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRES-NFFKT 90
          MADSG KRNIPIKLGDFSVID+EFSNIRERFDAEMRKMEDEM++FRSELMNRES NFFK+
Sbjct: 1  MADSGIKRNIPIKLGDFSVIDTEFSNIRERFDAEMRKMEDEMSRFRSELMNRESNNFFKS 60

Query: 91 STRC 94
          +T  
Sbjct: 61 TTSA 64

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110757651|ref|XP_392405.3| PREDICTED: heat shock protein beta-1-like isoform 1 [Apis mellifera]

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/62 (88%), Positives = 60/62 (96%), Gaps = 2/62 (3%)

Query: 33 MADSG-KRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRES-NFFKT 90
          MADSG KRNIPIKLGDFSVID+EFSNIRERFDAEMRKMEDEM++FRSELMNRES NFFK+
Sbjct: 1  MADSGIKRNIPIKLGDFSVIDTEFSNIRERFDAEMRKMEDEMSRFRSELMNRESNNFFKS 60

Query: 91 ST 92
          +T
Sbjct: 61 TT 62

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193618013|ref|XP_001949446.1| PREDICTED: alpha-crystallin B chain-like isoform 2 [Acyrthosiphon pisum]

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/57 (89%), Positives = 56/57 (98%)

Query: 38 KRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRESNFFKTSTRC 94
          KR+IPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMN+ESNFFKT+++ 
Sbjct: 8  KRDIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNKESNFFKTTSKT 64

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729374|ref|XP_003402979.1| PREDICTED: heat shock protein beta-1-like isoform 4 [Bombus terrestris]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/62 (88%), Positives = 60/62 (96%), Gaps = 2/62 (3%)

Query: 33 MADSG-KRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRES-NFFKT 90
          MADSG KRNIPIKLGDFSVID+EFSNIRERFDAEMRKMEDEM++FRSELMNRES NFFK+
Sbjct: 1  MADSGIKRNIPIKLGDFSVIDTEFSNIRERFDAEMRKMEDEMSRFRSELMNRESNNFFKS 60

Query: 91 ST 92
          +T
Sbjct: 61 TT 62

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156545575|ref|XP_001607669.1| PREDICTED: heat shock protein beta-6-like isoform 1 [Nasonia vitripennis] gi|226442061|gb|ACO57620.1| small heat shock protein [Pteromalus puparum] gi|343488866|gb|AEM45800.1| small heat shock protein [Pteromalus puparum]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/58 (93%), Positives = 57/58 (98%), Gaps = 1/58 (1%)

Query: 33 MADSG-KRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRESNFFK 89
          MADSG KRNIPIKLGDFSVIDSEFSNIRERFDAEMRKME+EM++FRSELMNRESNFFK
Sbjct: 1  MADSGIKRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEEEMSRFRSELMNRESNFFK 58

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
FB|FBgn0031037	192	CG14207 [Drosophila melanogast	0.6	0.312	0.783	1.5e-21
WB|WBGene00002023	219	hsp-25 [Caenorhabditis elegans	0.55	0.251	0.418	8e-08

FB|FBgn0031037 CG14207 [Drosophila melanogaster (taxid:7227)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 47/60 (78%), Positives = 57/60 (95%)

Query:    33 MADSGKRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRESNFFKTST 92
             MA++ KRNIPIKLGDFSVID+EFSNIRERFD+EMRKME+EM KFR ELMNRE+NFF++++
Sbjct:     1 MAEANKRNIPIKLGDFSVIDTEFSNIRERFDSEMRKMEEEMAKFRHELMNREANFFESTS 60

GO:0030018 "Z disc" evidence=IDA

GO:0010998 "regulation of translational initiation by eIF2 alpha phosphorylation" evidence=IMP

GO:0010506 "regulation of autophagy" evidence=IMP

GO:0006497 "protein lipidation" evidence=IMP

WB|WBGene00002023 hsp-25 [Caenorhabditis elegans (taxid:6239)]

 Score = 124 (48.7 bits), Expect = 8.0e-08, P = 8.0e-08
 Identities = 23/55 (41%), Positives = 36/55 (65%)

Query:    32 SMADSGKRNIPIKLGDFSVIDSEFSNIRERFDAEMRKMEDEMTKFRSELMNRESN 86
             S  +  +R I +   ++SVID+EF N+R+RF+ EMR++E+EM + RSE      N
Sbjct:    11 SKREMSERRIDVNRSNYSVIDNEFGNMRDRFEQEMRRVEEEMKRLRSEFEGYRPN 65


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.135   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      100       100   0.00091  102 3  11 22  0.48    29
                                                     29  0.47    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  496 (53 KB)
  Total size of DFA:  96 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.75u 0.13s 13.88t   Elapsed:  00:00:01
  Total cpu time:  13.75u 0.13s 13.88t   Elapsed:  00:00:01
  Start:  Thu Aug 15 12:22:46 2013   End:  Thu Aug 15 12:22:47 2013

GO:0055120 "striated muscle dense body" evidence=IDA

GO:0031430 "M band" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	100
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	98.15

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=98.15  E-value=6.5e-07  Score=69.40  Aligned_cols=39  Identities=21%  Similarity=0.391  Sum_probs=36.0

Q ss_pred             CceeecccccchH--------HHHHHHHHhhHHHHHHHHHHhhcccc
Q psy17759         47 DFSVIDSEFSNIR--------ERFDAEMRKMEDEMTKFRSELMNRES   85 (100)
Q Consensus        47 d~SViD~EFssiR--------ERFdaEMrkMEEEM~kFRselmnrEs   85 (100)
                      .+|+||++|++|+        ++|+++|++|++||.++|+++++.+.
T Consensus        16 ~~~~~d~~f~~~~~~~~~~~~~w~~~~~~~~~~e~~rlr~~~~~~~p   62 (314)
T 2bol_A           16 RRSLIDWEFPQMALVPLDQVFDWAERSRQSLHDDIVNMHRNLFSLEP   62 (314)
T ss_dssp             HHHHHTCCCGGGGSCCHHHHHHHHHHHHHTHHHHHHHHHHTCBCCEE
T ss_pred             cceeecccCCccCcCchhhhhhhhhhhhHhHHHHHHHHHhhhhhcCC
Confidence            6799999999999        99999999999999999999987553

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00