Psyllid ID: psy1779

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD
Secondary Structure (PSIPRED)
cccccccEEEEEEEccEEEEEEEcccccccEEEEcccccEEEEEccEEEEccccHHHHHHHHHHHHHHHHHcHHcccccccHHHHHHHHHHHHHcccccccccEEEEEEEEEcccccEEEEEEccccccEEcccEEEEcccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEccccEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEcccEEEEEEcccccccEEEcccccEEEEEccEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccEEEEEEcccccEEccccEEEEEccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccEccccccEEEEEEEcccEEEEEEccccc
Coil and Loop (DISEMBL)
MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENkvhqmsphlylinpglcadgmQFAEKMTLRTAnyvaseqspispdtFAAIASWELYARKltsplfinpiiagfypdsgevflstldmagcetrktdfvaggsaqNMIMGIgesfwqpglspeqlFEVCSQVVIQACErdtksgwgatvyvvepdkvTIRKIATRMD
Flexible Loop (DISEMBL)
MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACErdtksgwgatvyvvepdkvtirkiatrmd
Low Complexity Region (SEG)
MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD
Disordered region (IsUnstruct)
******GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKI*****
Disordered Region (DISOPRED)
MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRM*
Disordered Region (DISEMBL)
MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD
Disordered Region (DISPRO)
MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
Q9XYN7	205	Proteasome subunit beta t	yes	N/A	0.975	0.970	0.39	7e-39
O73817	205	Proteasome subunit beta t	N/A	N/A	0.985	0.980	0.385	3e-35
P25451	205	Proteasome subunit beta t	yes	N/A	0.970	0.965	0.36	2e-34
Q9R1P1	205	Proteasome subunit beta t	yes	N/A	0.985	0.980	0.365	7e-34
P40112	205	Proteasome subunit beta t	yes	N/A	0.985	0.980	0.360	9e-34
P33672	205	Proteasome subunit beta t	yes	N/A	0.985	0.980	0.360	1e-33
P49720	205	Proteasome subunit beta t	yes	N/A	0.985	0.980	0.356	3e-33
O65084	204	Proteasome subunit beta t	N/A	N/A	0.970	0.970	0.375	1e-32
Q9NDA1	205	Proteasome subunit beta t	N/A	N/A	0.970	0.965	0.366	3e-32
O81153	204	Proteasome subunit beta t	yes	N/A	0.970	0.970	0.36	2e-31

>sp|Q9XYN7|PSB3_DROME Proteasome subunit beta type-3 OS=Drosophila melanogaster GN=Prosbeta3 PE=2 SV=1

 Score =  160 bits (404), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 78/200 (39%), Positives = 113/200 (56%), Gaps = 1/200 (0%)

Query: 5   DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
           +GG +VAM GK+C AI  DH       TI+    KV  + P ++L   GL  D +   ++
Sbjct: 7   NGGCVVAMRGKDCVAIATDHRFGIQAQTISTDFKKVFHIGPRMFLGLTGLQTDILTVRDR 66

Query: 65  MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
           +  R   Y   E   + P  F+A+ S  LY  +   P FI P++AG  P + E F+  +D
Sbjct: 67  LMFRKNLYETRENREMCPKPFSAMMSSFLYEHRF-GPYFIEPVVAGLDPKTMEPFICNMD 125

Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
           + GC     DFV  G+    + G+ E+ W+P L P+QLFEV +Q ++ A +RD  SGWGA
Sbjct: 126 LIGCPNAPDDFVVAGTCAEQLYGMCETLWKPDLEPDQLFEVIAQSIVNAFDRDAMSGWGA 185

Query: 185 TVYVVEPDKVTIRKIATRMD 204
           TVY++E DK+T R + TRMD
Sbjct: 186 TVYIIEKDKITERTLKTRMD 205

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: 2EC: 5EC: .EC: 1

>sp|O73817|PSB3_ONCMY Proteasome subunit beta type-3 OS=Oncorhynchus mykiss GN=psmb3 PE=2 SV=1

 Score =  148 bits (373), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 110/205 (53%), Gaps = 4/205 (1%)

Query: 1   MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
           MS N GGA++AM GK C AI  D    VQ      +++ K+  M   LY+   GL  D  
Sbjct: 4   MSYN-GGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61

Query: 60  QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
             ++++  R   Y   E   I P TF ++ S  LY R+   P +I P+IAG  P + E F
Sbjct: 62  TVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRF-GPYYIEPVIAGLDPKTFEPF 120

Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
           + +LD+ GC     DFV  G+    + G+ ES W+P + PE LFE  SQ ++ A +RD  
Sbjct: 121 ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV 180

Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
           SG G  V V+E DK+T R +  RMD
Sbjct: 181 SGMGVVVQVIEKDKITTRTLKARMD 205

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Oncorhynchus mykiss (taxid: 8022)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P25451|PSB3_YEAST Proteasome subunit beta type-3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUP3 PE=1 SV=1

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/200 (36%), Positives = 107/200 (53%), Gaps = 2/200 (1%)

Query: 5   DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
           +GG +VAM GK+C AI  D  L      ++    K+     H++L   GL  D     E 
Sbjct: 8   NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEM 66

Query: 65  MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
              +T  Y   E+  I P+TF  + S  LY R+   P F+ P++AG    SG+ F++  D
Sbjct: 67  FRYKTNLYKLKEERAIEPETFTQLVSSSLYERRF-GPYFVGPVVAGINSKSGKPFIAGFD 125

Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
           + GC     DF+  G+A + + G+ ES ++P L PE LFE  SQ ++ A +RD  SGWGA
Sbjct: 126 LIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGA 185

Query: 185 TVYVVEPDKVTIRKIATRMD 204
            VY+++ D+V  R +  R D
Sbjct: 186 VVYIIKKDEVVKRYLKMRQD 205

The proteasome degrades poly-ubiquitinated proteins in the cytoplasm and in the nucleus. It is essential for the regulated turnover of proteins and for the removal of misfolded proteins. The proteasome is a multicatalytic proteinase complex that is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. It has an ATP-dependent proteolytic activity. This subunit may participate in the trypsin-like activity of the enzyme complex.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q9R1P1|PSB3_MOUSE Proteasome subunit beta type-3 OS=Mus musculus GN=Psmb3 PE=1 SV=1

 Score =  143 bits (361), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)

Query: 1   MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
           MS N GGA++AM GKNC AI  D    +Q      +++ K+  M   LY+   GL  D  
Sbjct: 4   MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61

Query: 60  QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
             A+++  R   Y   E   I P T  ++ +  LY ++   P +  P+IAG  P + + F
Sbjct: 62  TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120

Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
           + +LD+ GC     DFV  G+    + G+ ES W+P + PE LFE  SQ ++ A +RD  
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180

Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
           SG G  V+V+E DK+T R +  RMD
Sbjct: 181 SGMGVIVHVIEKDKITTRTLKARMD 205

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P40112|PSB3_RAT Proteasome subunit beta type-3 OS=Rattus norvegicus GN=Psmb3 PE=1 SV=1

 Score =  143 bits (360), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)

Query: 1   MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
           MS N GGA++AM GKNC AI  D    +Q      +++ K+  M   LY+   GL  D  
Sbjct: 4   MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61

Query: 60  QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
             A+++  R   Y   E   I P T  ++ +  LY ++   P +  P+IAG  P + + F
Sbjct: 62  TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120

Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
           + +LD+ GC     DFV  G+    + G+ ES W+P + PE LFE  SQ ++ A +RD  
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180

Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
           SG G  V+++E DK+T R +  RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P33672|PSB3_BOVIN Proteasome subunit beta type-3 OS=Bos taurus GN=PSMB3 PE=1 SV=3

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)

Query: 1   MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
           MS N GGA++AM GKNC AI  D    +Q      +++ K+  M   LY+   GL  D  
Sbjct: 4   MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61

Query: 60  QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
             A+++  R   Y   E   I P T  ++ +  LY ++   P +  P+IAG  P + + F
Sbjct: 62  TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120

Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
           + +LD+ GC     DFV  G+    + G+ ES W+P + PE LFE  SQ ++ A +RD  
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCTEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180

Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
           SG G  V+++E DK+T R +  RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P49720|PSB3_HUMAN Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2

 Score =  141 bits (356), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 110/205 (53%), Gaps = 4/205 (1%)

Query: 1   MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
           MS N GGA++AM GKNC AI  D    +Q      +++ K+  M   LY+   GL  D  
Sbjct: 4   MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61

Query: 60  QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
             A+++  R   Y   E   I P T  ++ +  LY ++   P +  P+IAG  P + + F
Sbjct: 62  TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120

Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
           + +LD+ GC     DFV  G+    + G+ ES W+P + P+ LFE  SQ ++ A +RD  
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAV 180

Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
           SG G  V+++E DK+T R +  RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|O65084|PSB3_PICMA Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/200 (37%), Positives = 109/200 (54%), Gaps = 2/200 (1%)

Query: 5   DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
           +G A+VAM GKNCFAI  D  L     TIA    ++ ++   LY+   GL  D     ++
Sbjct: 7   NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQR 66

Query: 65  MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
              R   Y   E+  + P+TFA++ S  LY ++   P F  P+IAG   D  + F+ T+D
Sbjct: 67  FAFRHKLYQLREERNMRPETFASLVSALLYEKRF-GPYFCQPVIAGLGEDD-KPFICTMD 124

Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
             G +    DFV  G+A   + G  ES ++P + PE+LFE  SQ ++ + +RD  SGWG 
Sbjct: 125 SIGAKELAKDFVVAGTAAESLYGACESMYKPDMEPEELFETISQALLSSIDRDCLSGWGG 184

Query: 185 TVYVVEPDKVTIRKIATRMD 204
            VYVV P++V  R +  RMD
Sbjct: 185 HVYVVSPNQVIERTLKGRMD 204

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Picea mariana (taxid: 3335)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q9NDA1|PSB3_TRYBB Proteasome subunit beta type-3 OS=Trypanosoma brucei brucei GN=PSB3 PE=2 SV=1

 Score =  138 bits (347), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 110/199 (55%), Gaps = 1/199 (0%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
           GG+ +AMAGK CF +  D+ L +   TI+    K+H ++  + +   GL  D   FA+K+
Sbjct: 8   GGSCLAMAGKECFVVISDNRLGEQLKTISMEVPKLHVINDGIVMGLTGLRTDQQTFAQKV 67

Query: 66  TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
             RT  Y   E+  I+   FAA+ S  LY  +   P F+ P+I      +GEV+L   D+
Sbjct: 68  NFRTEMYKLREERDINGKAFAALVSSMLYEARF-GPWFVEPVIGTIDRKTGEVYLCATDL 126

Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
            G      D+V  G+    + G+ E+ W+PGL PE+LFEV +Q ++ AC+RD+ SG+GA 
Sbjct: 127 IGAPCEPEDYVCAGTCAESLHGMCEALWRPGLEPEELFEVAAQAMLSACDRDSLSGYGAV 186

Query: 186 VYVVEPDKVTIRKIATRMD 204
             +V  DK+  R I  R D
Sbjct: 187 AAIVTKDKLVTRLIKGRKD 205

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Trypanosoma brucei brucei (taxid: 5702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|O81153|PSB3B_ARATH Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/200 (36%), Positives = 108/200 (54%), Gaps = 2/200 (1%)

Query: 5   DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
           +G A+VAM GKNCFAI  D  L     TIA    ++ ++  HL++   GL  D     ++
Sbjct: 7   NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQR 66

Query: 65  MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
           +  R   Y   E+  + P+TFA++ S  LY ++   P    P+IAG   D  + F+ T+D
Sbjct: 67  LVFRHKLYQLREERDMKPETFASLVSAILYEKRF-GPFLCQPVIAGL-GDDNKPFICTMD 124

Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
             G +    DFV  G+A   + G  E+ ++P +  E+LFE  SQ ++ + +RD  SGWG 
Sbjct: 125 SIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGG 184

Query: 185 TVYVVEPDKVTIRKIATRMD 204
            VYVV P +V  R +  RMD
Sbjct: 185 HVYVVTPKEVKERILKGRMD 204

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
91084563	210	PREDICTED: similar to proteasome beta 3	0.975	0.947	0.43	2e-42
270008657	205	hypothetical protein TcasGA2_TC015205 [T	0.975	0.970	0.43	2e-42
94468582	205	20S proteasome regulatory subunit beta t	0.975	0.970	0.43	2e-42
380022329	205	PREDICTED: proteasome subunit beta type-	0.970	0.965	0.417	3e-42
340724396	205	PREDICTED: proteasome subunit beta type-	0.970	0.965	0.432	3e-42
328785087	205	PREDICTED: proteasome subunit beta type-	0.970	0.965	0.417	3e-42
350397681	205	PREDICTED: proteasome subunit beta type-	0.970	0.965	0.432	4e-42
157112534	205	proteasome subunit beta type [Aedes aegy	0.975	0.970	0.425	7e-42
332375660	205	unknown [Dendroctonus ponderosae]	0.975	0.970	0.42	8e-42
156539935	205	PREDICTED: proteasome subunit beta type-	0.975	0.970	0.42	2e-41

>gi|91084563|ref|XP_973600.1| PREDICTED: similar to proteasome beta 3 subunit [Tribolium castaneum]

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/200 (43%), Positives = 117/200 (58%), Gaps = 1/200 (0%)

Query: 5   DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
           +GGA+VAM G  C +I  D        TIA    K+ +M PHLY+  PGL  D     EK
Sbjct: 12  NGGAMVAMKGDKCVSIASDKRFGIQAQTIATNFQKIFEMGPHLYVGLPGLATDTQTVMEK 71

Query: 65  MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
           +  R   Y   E  P+SP  F+A+ S  LY  +   P F+ PI+AG  P + E ++  +D
Sbjct: 72  LRFRKNLYELKENRPMSPKVFSAMLSNMLYENRF-GPFFVEPIVAGLDPGTYEPYICNMD 130

Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
           + GC  +  DFV GG+A + + G+ ES W+P L P+ LFE  SQ +I A +RD  SGWGA
Sbjct: 131 LIGCPNQPNDFVVGGTASSQLFGMCESLWEPNLGPDDLFETTSQALINAFDRDAISGWGA 190

Query: 185 TVYVVEPDKVTIRKIATRMD 204
            VY++E DKVT+R + TRMD
Sbjct: 191 VVYIIEKDKVTVRDLKTRMD 210

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008657|gb|EFA05105.1| hypothetical protein TcasGA2_TC015205 [Tribolium castaneum]

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/200 (43%), Positives = 117/200 (58%), Gaps = 1/200 (0%)

Query: 5   DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
           +GGA+VAM G  C +I  D        TIA    K+ +M PHLY+  PGL  D     EK
Sbjct: 7   NGGAMVAMKGDKCVSIASDKRFGIQAQTIATNFQKIFEMGPHLYVGLPGLATDTQTVMEK 66

Query: 65  MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
           +  R   Y   E  P+SP  F+A+ S  LY  +   P F+ PI+AG  P + E ++  +D
Sbjct: 67  LRFRKNLYELKENRPMSPKVFSAMLSNMLYENRF-GPFFVEPIVAGLDPGTYEPYICNMD 125

Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
           + GC  +  DFV GG+A + + G+ ES W+P L P+ LFE  SQ +I A +RD  SGWGA
Sbjct: 126 LIGCPNQPNDFVVGGTASSQLFGMCESLWEPNLGPDDLFETTSQALINAFDRDAISGWGA 185

Query: 185 TVYVVEPDKVTIRKIATRMD 204
            VY++E DKVT+R + TRMD
Sbjct: 186 VVYIIEKDKVTVRDLKTRMD 205

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|94468582|gb|ABF18140.1| 20S proteasome regulatory subunit beta type PSMB3/PUP3 [Aedes aegypti]

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/200 (43%), Positives = 121/200 (60%), Gaps = 1/200 (0%)

Query: 5   DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
           +GG +VAM GKNC AI  DH       TIA    KV +++PH+YL   GL  D +   ++
Sbjct: 7   NGGCVVAMKGKNCVAIATDHRFGVQAQTIATDFEKVFEINPHMYLGLVGLQTDILTVHQR 66

Query: 65  MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
           +  R   Y   E   ++P+ FAA+ S  LY ++   P FI P+IAG  P + E F+  +D
Sbjct: 67  LLFRKNLYEVRENREMTPERFAAMLSNFLYEKRF-GPYFIEPVIAGLNPKTFEPFICNMD 125

Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
           + GC     DFV  G+    + G+ E+ W+P L PE+LFEV SQ ++ A +RD  SGWGA
Sbjct: 126 LIGCPNMPNDFVVAGTCAEQLYGMCETLWKPDLEPEKLFEVISQALVNAFDRDAISGWGA 185

Query: 185 TVYVVEPDKVTIRKIATRMD 204
           TVY+VE DK+T++K+ TRMD
Sbjct: 186 TVYIVEKDKLTVKKLKTRMD 205

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022329|ref|XP_003695002.1| PREDICTED: proteasome subunit beta type-3-like [Apis florea]

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 84/201 (41%), Positives = 119/201 (59%), Gaps = 3/201 (1%)

Query: 5   DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
           +GGAI+AM GKNC AI  D    +Q      +++ K+ +M  HLYL  PGL  D     E
Sbjct: 7   NGGAIIAMKGKNCVAIAADRRFGIQAQTITCDFQ-KIFEMGSHLYLSLPGLATDTQTVME 65

Query: 64  KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
           K+  R   Y   E   I P  FA++ S  LY R+   P F+ PIIAG  P++ E F+  +
Sbjct: 66  KLRFRLNLYELKENRKIHPKAFASMVSNLLYERRF-GPYFVEPIIAGLNPNTYEPFICNM 124

Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
           D+ GC +   DFV GG+    + G+ ES ++P + P+ LFE  SQ ++ AC+RD  SGWG
Sbjct: 125 DLIGCISPSNDFVVGGTCSEQLYGMCESLYEPDMEPDDLFETISQALVNACDRDAISGWG 184

Query: 184 ATVYVVEPDKVTIRKIATRMD 204
           A VY++E DK+T++ + TRMD
Sbjct: 185 AIVYIIEKDKITVKTLKTRMD 205

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724396|ref|XP_003400568.1| PREDICTED: proteasome subunit beta type-3-like [Bombus terrestris]

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 87/201 (43%), Positives = 118/201 (58%), Gaps = 3/201 (1%)

Query: 5   DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
           +GGAI+AM GKNC AI  D    +Q      +++ K+ +M  HLYL  PGL  D     E
Sbjct: 7   NGGAIIAMKGKNCVAIAADRRFGIQAQTITCDFQ-KIFEMGSHLYLSLPGLATDTQTVME 65

Query: 64  KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
           K+  R   Y   E   I P TFA++ S  LY R+   P F+ P+IAG  P + E F+  +
Sbjct: 66  KLRFRLNLYELKENRKIHPKTFASMVSNLLYERRF-GPYFVEPVIAGLSPVTYEPFICNV 124

Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
           D+ GC +   DFV GG+    + G+ ES ++P + P+ LFE  SQ ++ AC+RD  SGWG
Sbjct: 125 DLIGCISPSNDFVVGGTCSEQLYGMCESLFEPDMEPDDLFETISQALVNACDRDAISGWG 184

Query: 184 ATVYVVEPDKVTIRKIATRMD 204
           A VY++E DKVT R I TRMD
Sbjct: 185 AIVYIIEKDKVTTRTIKTRMD 205

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785087|ref|XP_624958.3| PREDICTED: proteasome subunit beta type-3-like [Apis mellifera]

 Score =  176 bits (447), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 84/201 (41%), Positives = 119/201 (59%), Gaps = 3/201 (1%)

Query: 5   DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
           +GGAI+AM GKNC AI  D    +Q      +++ K+ +M  HLYL  PGL  D     E
Sbjct: 7   NGGAIIAMKGKNCVAIAADRRFGIQAQTITCDFQ-KIFEMGSHLYLSLPGLATDTQTVME 65

Query: 64  KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
           K+  R   Y   E   I P  FA++ S  LY R+   P F+ PIIAG  P++ E F+  +
Sbjct: 66  KLRFRLNLYELKENRKIHPKAFASMVSNLLYERRF-GPYFVEPIIAGLNPNTYEPFICNM 124

Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
           D+ GC +   DFV GG+    + G+ ES ++P + P+ LFE  SQ ++ AC+RD  SGWG
Sbjct: 125 DLIGCISPSNDFVVGGTCTEQLYGMCESLYEPDMEPDDLFETISQALVNACDRDAISGWG 184

Query: 184 ATVYVVEPDKVTIRKIATRMD 204
           A VY++E DK+T++ + TRMD
Sbjct: 185 AIVYIIEKDKITVKTLKTRMD 205

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397681|ref|XP_003484954.1| PREDICTED: proteasome subunit beta type-3-like [Bombus impatiens]

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 87/201 (43%), Positives = 118/201 (58%), Gaps = 3/201 (1%)

Query: 5   DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
           +GGAI+AM GKNC AI  D    +Q      +++ K+ +M  HLYL  PGL  D     E
Sbjct: 7   NGGAIIAMKGKNCVAIAADRRFGIQAQTITCDFQ-KIFEMGSHLYLSLPGLATDTQTVME 65

Query: 64  KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
           K+  R   Y   E   I P TFA++ S  LY R+   P F+ P+IAG  P + E F+  +
Sbjct: 66  KLRFRLNLYELKENRKIHPKTFASMVSNLLYERRF-GPYFVEPVIAGLSPVTYEPFVCNV 124

Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
           D+ GC +   DFV GG+    + G+ ES ++P + P+ LFE  SQ ++ AC+RD  SGWG
Sbjct: 125 DLIGCISPSDDFVVGGTCSEQLYGMCESLYEPDMEPDDLFETISQALVNACDRDAISGWG 184

Query: 184 ATVYVVEPDKVTIRKIATRMD 204
           A VY++E DKVT R I TRMD
Sbjct: 185 AIVYIIEKDKVTTRTIKTRMD 205

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157112534|ref|XP_001651824.1| proteasome subunit beta type [Aedes aegypti] gi|108878045|gb|EAT42270.1| AAEL006174-PA [Aedes aegypti]

 Score =  176 bits (445), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 85/200 (42%), Positives = 121/200 (60%), Gaps = 1/200 (0%)

Query: 5   DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
           +GG +VAM GKNC AI  DH       TIA    KV +++PH+YL   GL  D +   ++
Sbjct: 7   NGGCVVAMKGKNCVAIATDHRFGVQAQTIATDFEKVFEINPHMYLGLVGLQTDILTVHQR 66

Query: 65  MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
           +  R   Y   E   ++P+ FAA+ S  LY ++   P FI P+IAG  P + E F+  +D
Sbjct: 67  LLFRKNLYEVRENREMTPERFAAMLSNFLYEKRF-GPYFIEPVIAGLNPKTFEPFICNMD 125

Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
           + GC     DFV  G+    + G+ E+ W+P L PE+LFEV SQ ++ A +RD  SGWGA
Sbjct: 126 LIGCPNMPNDFVVAGTCAEQLYGMCETLWKPDLEPEKLFEVISQALVNAFDRDAISGWGA 185

Query: 185 TVYVVEPDKVTIRKIATRMD 204
           TVY+VE +K+T++K+ TRMD
Sbjct: 186 TVYIVEKEKLTVKKLKTRMD 205

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375660|gb|AEE62971.1| unknown [Dendroctonus ponderosae]

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 84/200 (42%), Positives = 119/200 (59%), Gaps = 1/200 (0%)

Query: 5   DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
           +GGA++AM G+NC AI  D        T+A    K+ +M  HLY+  PGL  D     EK
Sbjct: 7   NGGAMLAMKGENCVAIAADRRFGVQAQTLATNFEKIFEMGSHLYVGLPGLATDTQTVMEK 66

Query: 65  MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
           +  R   Y   E   +SP  F+A+ S  LY  +   P F+ P++AG  P + E F+  +D
Sbjct: 67  LRFRKNIYELKENRAMSPRVFSAMVSHLLYENRF-GPYFVEPVVAGLEPKTFEPFICNMD 125

Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
           + GC  +  DFV GG+A   + G+ E+ W+P L+P++LFE  SQ +I A +RD  SGWGA
Sbjct: 126 LIGCINQPKDFVVGGTASAQLYGMCEALWEPNLTPDELFETTSQALINAFDRDAVSGWGA 185

Query: 185 TVYVVEPDKVTIRKIATRMD 204
           TVY++E DKVTI+ + TRMD
Sbjct: 186 TVYIIEKDKVTIKNLKTRMD 205

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156539935|ref|XP_001599218.1| PREDICTED: proteasome subunit beta type-3-like isoform 1 [Nasonia vitripennis]

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/200 (42%), Positives = 116/200 (58%), Gaps = 1/200 (0%)

Query: 5   DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
           +GGAI+AM GKNC AI  D        TI+    K+++M PHLYL  PGL  D     E+
Sbjct: 7   NGGAIIAMKGKNCVAIAADRRFGIQAQTISCNFQKIYEMGPHLYLGLPGLATDSQTVMER 66

Query: 65  MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
           +  R   Y   E   I P TF ++ S  LY R+   P F+ PI+AG  P++ E F+  +D
Sbjct: 67  LRFRLNLYELKESRTIHPKTFGSMISNLLYERRF-GPYFVEPIVAGLDPETFEPFICNMD 125

Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
           + GC     DFV GG+    + G+ E+ ++P L  + LFE  SQ ++ AC+RD  SGWGA
Sbjct: 126 LIGCLNLPEDFVVGGTCSEQLYGMCEALYEPNLDADDLFETISQALVNACDRDAISGWGA 185

Query: 185 TVYVVEPDKVTIRKIATRMD 204
            V+++E DK+T R I TRMD
Sbjct: 186 IVHIIEKDKITTRTIKTRMD 205

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
FB|FBgn0026380	205	Prosbeta3 "Proteasome beta3 su	0.970	0.965	0.393	1.3e-36
UNIPROTKB|O73817	205	psmb3 "Proteasome subunit beta	0.985	0.980	0.385	5.8e-34
UNIPROTKB|E1BYW9	205	PSMB3 "Proteasome subunit beta	0.985	0.980	0.375	7.4e-34
ZFIN|ZDB-GENE-040426-2682	205	psmb3 "proteasome (prosome, ma	0.985	0.980	0.380	7.4e-34
SGD|S000000896	205	PUP3 "Beta 3 subunit of the 20	0.980	0.975	0.364	4.1e-33
MGI|MGI:1347014	205	Psmb3 "proteasome (prosome, ma	0.985	0.980	0.365	1.1e-32
UNIPROTKB|E2QX17	205	PSMB3 "Proteasome subunit beta	0.985	0.980	0.360	1.4e-32
RGD|61875	205	Psmb3 "proteasome (prosome, ma	0.985	0.980	0.360	1.4e-32
UNIPROTKB|P40112	205	Psmb3 "Proteasome subunit beta	0.985	0.980	0.360	1.4e-32
UNIPROTKB|P33672	205	PSMB3 "Proteasome subunit beta	0.985	0.980	0.360	1.8e-32

FB|FBgn0026380 Prosbeta3 "Proteasome beta3 subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 79/201 (39%), Positives = 115/201 (57%)

Query:     5 DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
             +GG +VAM GK+C AI  DH   +Q   TI+    KV  + P ++L   GL  D +   +
Sbjct:     7 NGGCVVAMRGKDCVAIATDHRFGIQAQ-TISTDFKKVFHIGPRMFLGLTGLQTDILTVRD 65

Query:    64 KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
             ++  R   Y   E   + P  F+A+ S  LY  +   P FI P++AG  P + E F+  +
Sbjct:    66 RLMFRKNLYETRENREMCPKPFSAMMSSFLYEHRF-GPYFIEPVVAGLDPKTMEPFICNM 124

Query:   124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
             D+ GC     DFV  G+    + G+ E+ W+P L P+QLFEV +Q ++ A +RD  SGWG
Sbjct:   125 DLIGCPNAPDDFVVAGTCAEQLYGMCETLWKPDLEPDQLFEVIAQSIVNAFDRDAMSGWG 184

Query:   184 ATVYVVEPDKVTIRKIATRMD 204
             ATVY++E DK+T R + TRMD
Sbjct:   185 ATVYIIEKDKITERTLKTRMD 205

GO:0005839 "proteasome core complex" evidence=ISS

GO:0004175 "endopeptidase activity" evidence=ISS;NAS

GO:0000502 "proteasome complex" evidence=NAS

GO:0006508 "proteolysis" evidence=NAS

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|O73817 psmb3 "Proteasome subunit beta type-3" [Oncorhynchus mykiss (taxid:8022)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 79/205 (38%), Positives = 110/205 (53%)

Query:     1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
             MS N GGA++AM GK C AI  D    VQ      +++ K+  M   LY+   GL  D  
Sbjct:     4 MSYN-GGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61

Query:    60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
               ++++  R   Y   E   I P TF ++ S  LY R+   P +I P+IAG  P + E F
Sbjct:    62 TVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRF-GPYYIEPVIAGLDPKTFEPF 120

Query:   120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
             + +LD+ GC     DFV  G+    + G+ ES W+P + PE LFE  SQ ++ A +RD  
Sbjct:   121 ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAV 180

Query:   180 SGWGATVYVVEPDKVTIRKIATRMD 204
             SG G  V V+E DK+T R +  RMD
Sbjct:   181 SGMGVVVQVIEKDKITTRTLKARMD 205

GO:0005839 "proteasome core complex" evidence=ISS

UNIPROTKB|E1BYW9 PSMB3 "Proteasome subunit beta type" [Gallus gallus (taxid:9031)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 77/205 (37%), Positives = 111/205 (54%)

Query:     1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
             MS N GGA++AM GKNC AI  D    +Q      +++ K+  M   LY+   GL  D  
Sbjct:     4 MSYN-GGAVMAMRGKNCVAIASDRRFGIQAQMVTTDFQ-KIFPMGERLYIGLAGLATDVQ 61

Query:    60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
               A+++  R   Y   E   I P TF ++ S  LY R+   P +  P+IAG  P + E F
Sbjct:    62 TVAQRLKFRLNLYELKEGRQIKPQTFMSMVSNLLYERRF-GPYYTEPVIAGLDPITHEPF 120

Query:   120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
             + +LD+ GC     DFV  G+    + G+ ES W+P + P+ LFE  SQ ++ A +RD  
Sbjct:   121 ICSLDLIGCPMITEDFVVSGTCSEQMYGMCESLWEPDMEPDHLFETISQAMLNAVDRDAI 180

Query:   180 SGWGATVYVVEPDKVTIRKIATRMD 204
             SG G  V+++E DK+T R +  RMD
Sbjct:   181 SGMGVVVHIIEKDKITTRTLKARMD 205

GO:0005839 "proteasome core complex" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-040426-2682 psmb3 "proteasome (prosome, macropain) subunit, beta type, 3" [Danio rerio (taxid:7955)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 78/205 (38%), Positives = 111/205 (54%)

Query:     1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
             MS N GGA++AM GK C AI  D    +Q      +++ K+  M   LY+   GL  D  
Sbjct:     4 MSYN-GGAVMAMRGKECVAIASDRRFGIQAQLVTTDFQ-KIFPMGERLYIGLAGLATDVQ 61

Query:    60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
               ++++  R   Y   E   I P TF ++ S  LY R+   P +I P+IAG  P + E F
Sbjct:    62 TVSQRLKFRLNLYELKEGRQIKPRTFMSMVSNLLYERRF-GPYYIEPVIAGLDPKTFEPF 120

Query:   120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
             + +LD+ GC     DFV  G+    + G+ ES W+P + PE LFE  SQ ++ A +RD  
Sbjct:   121 ICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMKPEDLFETISQAMLNAVDRDAV 180

Query:   180 SGWGATVYVVEPDKVTIRKIATRMD 204
             SG G  V+V+E DK+T R +  RMD
Sbjct:   181 SGMGVVVHVIEKDKITTRTLKARMD 205

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

SGD|S000000896 PUP3 "Beta 3 subunit of the 20S proteasome" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 74/203 (36%), Positives = 109/203 (53%)

Query:     2 SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQF 61
             S+N GG +VAM GK+C AI  D  L      ++    K+     H++L   GL  D    
Sbjct:     6 SIN-GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTL 63

Query:    62 AEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
              E    +T  Y   E+  I P+TF  + S  LY R+   P F+ P++AG    SG+ F++
Sbjct:    64 NEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRF-GPYFVGPVVAGINSKSGKPFIA 122

Query:   122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
               D+ GC     DF+  G+A + + G+ ES ++P L PE LFE  SQ ++ A +RD  SG
Sbjct:   123 GFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSG 182

Query:   182 WGATVYVVEPDKVTIRKIATRMD 204
             WGA VY+++ D+V  R +  R D
Sbjct:   183 WGAVVYIIKKDEVVKRYLKMRQD 205

GO:0061133 "endopeptidase activator activity" evidence=IGI

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IC

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0019774 "proteasome core complex, beta-subunit complex" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IC

GO:0034515 "proteasome storage granule" evidence=IC

GO:0010499 "proteasomal ubiquitin-independent protein catabolic process" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

MGI|MGI:1347014 Psmb3 "proteasome (prosome, macropain) subunit, beta type 3" [Mus musculus (taxid:10090)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 75/205 (36%), Positives = 110/205 (53%)

Query:     1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
             MS N GGA++AM GKNC AI  D    +Q      +++ K+  M   LY+   GL  D  
Sbjct:     4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61

Query:    60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
               A+++  R   Y   E   I P T  ++ +  LY ++   P +  P+IAG  P + + F
Sbjct:    62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120

Query:   120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
             + +LD+ GC     DFV  G+    + G+ ES W+P + PE LFE  SQ ++ A +RD  
Sbjct:   121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180

Query:   180 SGWGATVYVVEPDKVTIRKIATRMD 204
             SG G  V+V+E DK+T R +  RMD
Sbjct:   181 SGMGVIVHVIEKDKITTRTLKARMD 205

GO:0000502 "proteasome complex" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=ISO

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030163 "protein catabolic process" evidence=TAS

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|E2QX17 PSMB3 "Proteasome subunit beta type" [Canis lupus familiaris (taxid:9615)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 74/205 (36%), Positives = 110/205 (53%)

Query:     1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
             MS N GGA++AM GKNC AI  D    +Q      +++ K+  M   LY+   GL  D  
Sbjct:     4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61

Query:    60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
               A+++  R   Y   E   I P T  ++ +  LY ++   P +  P+IAG  P + + F
Sbjct:    62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120

Query:   120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
             + +LD+ GC     DFV  G+    + G+ ES W+P + PE LFE  SQ ++ A +RD  
Sbjct:   121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180

Query:   180 SGWGATVYVVEPDKVTIRKIATRMD 204
             SG G  V+++E DK+T R +  RMD
Sbjct:   181 SGMGVIVHIIEKDKITTRTLKARMD 205

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

RGD|61875 Psmb3 "proteasome (prosome, macropain) subunit, beta type 3" [Rattus norvegicus (taxid:10116)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 74/205 (36%), Positives = 110/205 (53%)

Query:     1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
             MS N GGA++AM GKNC AI  D    +Q      +++ K+  M   LY+   GL  D  
Sbjct:     4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61

Query:    60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
               A+++  R   Y   E   I P T  ++ +  LY ++   P +  P+IAG  P + + F
Sbjct:    62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120

Query:   120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
             + +LD+ GC     DFV  G+    + G+ ES W+P + PE LFE  SQ ++ A +RD  
Sbjct:   121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180

Query:   180 SGWGATVYVVEPDKVTIRKIATRMD 204
             SG G  V+++E DK+T R +  RMD
Sbjct:   181 SGMGVIVHIIEKDKITTRTLKARMD 205

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA;ISO;ISS

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|P40112 Psmb3 "Proteasome subunit beta type-3" [Rattus norvegicus (taxid:10116)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 74/205 (36%), Positives = 110/205 (53%)

Query:     1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
             MS N GGA++AM GKNC AI  D    +Q      +++ K+  M   LY+   GL  D  
Sbjct:     4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61

Query:    60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
               A+++  R   Y   E   I P T  ++ +  LY ++   P +  P+IAG  P + + F
Sbjct:    62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120

Query:   120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
             + +LD+ GC     DFV  G+    + G+ ES W+P + PE LFE  SQ ++ A +RD  
Sbjct:   121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180

Query:   180 SGWGATVYVVEPDKVTIRKIATRMD 204
             SG G  V+++E DK+T R +  RMD
Sbjct:   181 SGMGVIVHIIEKDKITTRTLKARMD 205

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|P33672 PSMB3 "Proteasome subunit beta type-3" [Bos taurus (taxid:9913)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 74/205 (36%), Positives = 110/205 (53%)

Query:     1 MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
             MS N GGA++AM GKNC AI  D    +Q      +++ K+  M   LY+   GL  D  
Sbjct:     4 MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61

Query:    60 QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
               A+++  R   Y   E   I P T  ++ +  LY ++   P +  P+IAG  P + + F
Sbjct:    62 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120

Query:   120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
             + +LD+ GC     DFV  G+    + G+ ES W+P + PE LFE  SQ ++ A +RD  
Sbjct:   121 ICSLDLIGCPMVTDDFVVSGTCTEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180

Query:   180 SGWGATVYVVEPDKVTIRKIATRMD 204
             SG G  V+++E DK+T R +  RMD
Sbjct:   181 SGMGVIVHIIEKDKITTRTLKARMD 205

GO:0005839 "proteasome core complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LST7	PSB3_ORYSJ	3, ., 4, ., 2, 5, ., 1	0.37	0.9705	0.9705	yes	N/A
B1L6X8	PSB2_KORCO	3, ., 4, ., 2, 5, ., 1	0.2162	0.8431	0.8686	yes	N/A
P33672	PSB3_BOVIN	3, ., 4, ., 2, 5, ., 1	0.3609	0.9852	0.9804	yes	N/A
Q8TW10	PSB_METKA	3, ., 4, ., 2, 5, ., 1	0.2446	0.9019	0.8761	yes	N/A
P40112	PSB3_RAT	3, ., 4, ., 2, 5, ., 1	0.3609	0.9852	0.9804	yes	N/A
Q9XI05	PSB3A_ARATH	3, ., 4, ., 2, 5, ., 1	0.34	0.9705	0.9705	yes	N/A
O81153	PSB3B_ARATH	3, ., 4, ., 2, 5, ., 1	0.36	0.9705	0.9705	yes	N/A
Q55D66	PSB3_DICDI	3, ., 4, ., 2, 5, ., 1	0.295	0.9754	0.9707	yes	N/A
Q9Y7T8	PSB3_SCHPO	3, ., 4, ., 2, 5, ., 1	0.365	0.9705	0.9705	yes	N/A
C5A7L1	PSB1_THEGJ	3, ., 4, ., 2, 5, ., 1	0.2287	0.8872	0.9004	yes	N/A
D1Z199	PSB_METPS	3, ., 4, ., 2, 5, ., 1	0.2146	0.9117	0.9073	yes	N/A
A8AB58	PSB2_IGNH4	3, ., 4, ., 2, 5, ., 1	0.2447	0.9166	0.8820	yes	N/A
Q9R1P1	PSB3_MOUSE	3, ., 4, ., 2, 5, ., 1	0.3658	0.9852	0.9804	yes	N/A
A0B5B1	PSB_METTP	3, ., 4, ., 2, 5, ., 1	0.2275	0.8627	0.8502	yes	N/A
A2BN27	PSB2_HYPBU	3, ., 4, ., 2, 5, ., 1	0.2406	0.8921	0.8584	yes	N/A
A9A4A1	PSB1_NITMS	3, ., 4, ., 2, 5, ., 1	0.2343	0.8284	0.8535	yes	N/A
B8D673	PSB1_DESK1	3, ., 4, ., 2, 5, ., 1	0.2427	0.8284	0.8366	yes	N/A
Q23237	PSB3_CAEEL	3, ., 4, ., 2, 5, ., 1	0.3467	0.9656	0.9656	yes	N/A
A3DN21	PSB1_STAMF	3, ., 4, ., 2, 5, ., 1	0.2272	0.9509	0.9107	yes	N/A
P25451	PSB3_YEAST	3, ., 4, ., 2, 5, ., 1	0.36	0.9705	0.9658	yes	N/A
P49720	PSB3_HUMAN	3, ., 4, ., 2, 5, ., 1	0.3560	0.9852	0.9804	yes	N/A
A8MBW0	PSB1_CALMQ	3, ., 4, ., 2, 5, ., 1	0.2272	0.8431	0.8349	yes	N/A
Q9XYN7	PSB3_DROME	3, ., 4, ., 2, 5, ., 1	0.39	0.9754	0.9707	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.25.1	0.824
3rd Layer	3.4.25	0.766

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	204
cd03759	195	cd03759, proteasome_beta_type_3, proteasome beta t	5e-58
cd01912	189	cd01912, proteasome_beta, proteasome beta subunit	1e-38
pfam00227	188	pfam00227, Proteasome, Proteasome subunit	1e-29
COG0638	236	COG0638, PRE1, 20S proteasome, alpha and beta subu	2e-29
cd01906	182	cd01906, proteasome_protease_HslV, proteasome_prot	1e-28
cd01901	164	cd01901, Ntn_hydrolase, The Ntn hydrolases (N-term	1e-16
cd03757	212	cd03757, proteasome_beta_type_1, proteasome beta t	3e-12
TIGR03634	185	TIGR03634, arc_protsome_B, proteasome endopeptidas	4e-12
cd03764	188	cd03764, proteasome_beta_archeal, Archeal proteaso	1e-11
cd03760	197	cd03760, proteasome_beta_type_4, proteasome beta t	1e-05
cd03762	188	cd03762, proteasome_beta_type_6, proteasome beta t	0.002
cd03758	193	cd03758, proteasome_beta_type_2, proteasome beta t	0.002

>gnl|CDD|239728 cd03759, proteasome_beta_type_3, proteasome beta type-3 subunit

 Score =  180 bits (460), Expect = 5e-58
 Identities = 79/196 (40%), Positives = 118/196 (60%), Gaps = 4/196 (2%)

Query: 5   DGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
           +GGA+VAMAGK+C AI  D  L VQ      +++ KV ++   LY+   GL  D    A+
Sbjct: 2   NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQ-KVFRIGDRLYIGLAGLATDVQTLAQ 60

Query: 64  KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
           K+  R   Y   E+  I P TF+++ S  LY ++   P F+ P++AG  PD G+ F+ T+
Sbjct: 61  KLRFRVNLYRLREEREIKPKTFSSLISSLLYEKRFG-PYFVEPVVAGLDPD-GKPFICTM 118

Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
           D+ GC +  +DFV  G+A   + G+ ES W+P + P++LFE  SQ ++ A +RD  SGWG
Sbjct: 119 DLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFETISQALLSAVDRDALSGWG 178

Query: 184 ATVYVVEPDKVTIRKI 199
           A VY++  DKVT R +
Sbjct: 179 AVVYIITKDKVTTRTL 194

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 195

>gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit

 Score =  131 bits (331), Expect = 1e-38
 Identities = 47/192 (24%), Positives = 79/192 (41%), Gaps = 3/192 (1%)

Query: 7   GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMT 66
             IV + GK+   +  D     G    +   +K+ ++S ++ L   G  AD       + 
Sbjct: 1   TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLK 60

Query: 67  LRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMA 126
                Y       +S    A + S  LY+ +   P +++ I+ G     G  FL  +D  
Sbjct: 61  RNLRLYELRNGRELSVKAAANLLSNILYSYRGF-PYYVSLIVGGVDKG-GGPFLYYVDPL 118

Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATV 186
           G    +  FVA GS      GI +  ++P ++ E+  E+  + +  A ERD  SG G  V
Sbjct: 119 GSLI-EAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKKAIDSAIERDLSSGGGVDV 177

Query: 187 YVVEPDKVTIRK 198
            V+  D V   +
Sbjct: 178 AVITKDGVEELR 189

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189

>gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit

 Score =  108 bits (271), Expect = 1e-29
 Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 5/187 (2%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYE-NKVHQMSPHLYLINPGLCADGMQFAEK 64
           G  IV + GK+   +  D    +G   +++    K+ ++  H+ +   GL AD     + 
Sbjct: 4   GTTIVGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADAQTLVDY 63

Query: 65  MTLRTANYVASEQSPISPDTFAAIASW--ELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
                  Y      PIS +    IA             P  ++ +IAG Y + G   L +
Sbjct: 64  ARAEAQLYRLRYGRPISVELAKRIADKLQAYTQYSGRRPYGVSLLIAG-YDEDGGPHLYS 122

Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
           +D +G    +    A GS      G  E  ++P ++ E+  E+  + + +A ERD  SG 
Sbjct: 123 IDPSGS-VIEYKATAIGSGSQYAYGFLEKLYKPDMTLEEAVELAVKALKEAIERDALSGG 181

Query: 183 GATVYVV 189
              V V+
Sbjct: 182 NIEVAVI 188

The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria. The second is call beta-proteobacteria proteasome homologue (BPH). Length = 188

>gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

 Score =  108 bits (272), Expect = 2e-29
 Identities = 43/193 (22%), Positives = 72/193 (37%), Gaps = 4/193 (2%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
           G   V + GK+   +  D     G    +    K+ ++  H+ +   GL AD        
Sbjct: 30  GTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYA 89

Query: 66  TLRTANYVASEQSPISPDTFAAIASWELYARKLTS-PLFINPIIAGFYPDSGEVFLSTLD 124
                 Y      PIS +  A + S  L     +  P  ++ ++AG       ++  + D
Sbjct: 90  RAEAQLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDDGGPRLY--STD 147

Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
            +G         A GS      G  E  ++  LS E+  E+  + +  A ERD  SG G 
Sbjct: 148 PSGSYNEY-KATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGI 206

Query: 185 TVYVVEPDKVTIR 197
            V V+  D+   +
Sbjct: 207 EVAVITKDEGFRK 219

Length = 236

>gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV

 Score =  105 bits (264), Expect = 1e-28
 Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 3/184 (1%)

Query: 7   GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMT 66
             IV + GK+   +  D  +  G    +    K+ ++  H+     GL AD     E++ 
Sbjct: 1   TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLR 60

Query: 67  LRTANYVASEQSPISPDTFAAIASWELYARKLTS-PLFINPIIAGFYPDSGEVFLSTLDM 125
                Y      PI  +  A + +  LY    +  PL ++ ++AG   + G   L ++D 
Sbjct: 61  KEAQLYRLRYGEPIPVEALAKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGP-QLYSVDP 119

Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
           +G    +    A GS     +GI E  ++P ++ E+  E+  + +  A ERD  SG    
Sbjct: 120 SGSYI-EYKATAIGSGSQYALGILEKLYKPDMTLEEAIELALKALKSALERDLYSGGNIE 178

Query: 186 VYVV 189
           V V+
Sbjct: 179 VAVI 182

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleophilic threonine that is exposed by post-translational processing of an inactive propeptide. Length = 182

>gnl|CDD|238884 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

 Score = 73.6 bits (181), Expect = 1e-16
 Identities = 34/162 (20%), Positives = 57/162 (35%), Gaps = 2/162 (1%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
            VA+ GK    +  D  L  G         K+ +    +     GL AD      ++   
Sbjct: 3   SVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREA 62

Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
              Y      PIS    A   +  L       P  +N I+AG     G ++   +D +G 
Sbjct: 63  LQLYRLRYGEPISVVALAKELAKLLQVYTQGRPFGVNLIVAGVDEGGGNLY--YIDPSGP 120

Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVV 170
                  VA GS       + E  ++P ++ E+  E+  + +
Sbjct: 121 VIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELALKAL 162

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either the nucleophilic hydroxyl in a Ser or Thr residue or the nucleophilic thiol in a Cys residue. The position of the N-terminal nucleophile in the active site and the mechanism of catalysis are conserved in this family, despite considerable variation in the protein sequences. Length = 164

>gnl|CDD|239726 cd03757, proteasome_beta_type_1, proteasome beta type-1 subunit

 Score = 62.7 bits (153), Expect = 3e-12
 Identities = 51/213 (23%), Positives = 93/213 (43%), Gaps = 18/213 (8%)

Query: 4   NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
           ++GG ++A+AG +   I  D  L +G   ++    K+ +++    L + G  AD +   +
Sbjct: 6   DNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTK 65

Query: 64  KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDS---GEVFL 120
           ++  R   Y  S    +S +  A + S  LY+R+   P ++  I+AG   D    G V+ 
Sbjct: 66  RLKARIKMYKYSHNKEMSTEAIAQLLSTILYSRRFF-PYYVFNILAGI--DEEGKGVVY- 121

Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESF-----WQPG----LSPEQLFEVCSQVVI 171
            + D  G   R+T + AGGSA ++I  + ++              LS E+   +      
Sbjct: 122 -SYDPVGSYERET-YSAGGSASSLIQPLLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFT 179

Query: 172 QACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
            A ERD  +G    + ++  D +       R D
Sbjct: 180 SAAERDIYTGDSLEIVIITKDGIEEETFPLRKD 212

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 212

>gnl|CDD|234287 TIGR03634, arc_protsome_B, proteasome endopeptidase complex, archaeal, beta subunit

 Score = 61.8 bits (151), Expect = 4e-12
 Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 4/166 (2%)

Query: 29  GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
           G+F  ++   KV Q+  ++ +   G   D       +      Y      P+S    A +
Sbjct: 24  GNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKALATL 83

Query: 89  ASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGI 148
            S  L + +   P  +  ++ G   +   ++  +LD AG    + D+ A GS   +  G+
Sbjct: 84  LSNILNSNRFF-PFIVQLLVGGVDEEGPHLY--SLDPAGGII-EDDYTATGSGSPVAYGV 139

Query: 149 GESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKV 194
            E  ++  +S E+  ++  + +  A ERD  SG G  V V+  D V
Sbjct: 140 LEDEYREDMSVEEAKKLAVRAIKSAIERDVASGNGIDVAVITKDGV 185

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 185

>gnl|CDD|239733 cd03764, proteasome_beta_archeal, Archeal proteasome, beta subunit

 Score = 60.7 bits (148), Expect = 1e-11
 Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 4/164 (2%)

Query: 29  GDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAI 88
           G+F  ++   K+ Q+   + +   G   D       +      Y      P+S    A +
Sbjct: 23  GNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALATL 82

Query: 89  ASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGI 148
            S  L + K   P  +  +I G   +   ++  +LD  G    +  + A GS      G+
Sbjct: 83  LSNILNSSKYF-PYIVQLLIGGVDEEGPHLY--SLDPLGSII-EDKYTATGSGSPYAYGV 138

Query: 149 GESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPD 192
            E  ++  ++ E+  ++  + +  A ERD+ SG G  V V+  D
Sbjct: 139 LEDEYKEDMTVEEAKKLAIRAIKSAIERDSASGDGIDVVVITKD 182

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|239729 cd03760, proteasome_beta_type_4, proteasome beta type-4 subunit

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 48/206 (23%), Positives = 90/206 (43%), Gaps = 28/206 (13%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN--KVHQMSPHLYLINPGLCADGMQFA- 62
           G +++A+  K+   I  D L   G  ++A ++N  ++ ++  +  L   G  AD  Q+  
Sbjct: 2   GTSVIAIKYKDGVIIAADTLGSYG--SLARFKNVERIFKVGDNTLLGASGDYAD-FQYLK 58

Query: 63  ---EKMTLRTANYVASEQSPISPDTFAAIASW---ELYARKLT-SPLFINPIIAGFYPDS 115
              +++ +        +   +SP     I S+    LY R+   +PL+   ++ G   + 
Sbjct: 59  RLLDQLVIDDECL--DDGHSLSPK---EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNE- 112

Query: 116 GEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFW--QPGLSPEQ---LFEVCSQVV 170
           GE FL  +D+ G    +   VA G    + + +    W  +P L+ E+   L E C +V+
Sbjct: 113 GEPFLGYVDLLGT-AYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEARALIEECMKVL 171

Query: 171 IQACERDTKSGWGATVYVVEPDKVTI 196
                RD +S     + VV  + V I
Sbjct: 172 ---YYRDARSINKYQIAVVTKEGVEI 194

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 197

>gnl|CDD|239731 cd03762, proteasome_beta_type_6, proteasome beta type-6 subunit

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 6/174 (3%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
           I+A+       +G D     G +      +K+ Q+   +Y    G  AD    A+ +   
Sbjct: 3   IIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYY 62

Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSG-EVFLSTLDMAG 127
              +      P    T A++     Y  K    L    I+AG+   +G +V+   L   G
Sbjct: 63  LDMHSIELGEPPLVKTAASLFKNLCYNYK--EMLSAGIIVAGWDEQNGGQVYSIPL--GG 118

Query: 128 CETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
              R+  F  GGS    I G  ++ ++PG++ E+  +     +  A  RD  SG
Sbjct: 119 MLIRQ-PFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNALSLAMSRDGSSG 171

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|239727 cd03758, proteasome_beta_type_2, proteasome beta type-2 subunit

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 11/130 (8%)

Query: 37  ENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFAAIASW---EL 93
           E+K++++S H  +   G   D +QFAE +      Y       +SP    A A++   EL
Sbjct: 32  EDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSP---KAAANFTRREL 88

Query: 94  YARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGES 151
            A  L S  P  +N ++AG+    G   L  +D  G    K  + A G      + I + 
Sbjct: 89  -AESLRSRTPYQVNLLLAGYDKVEGP-SLYYIDYLGTLV-KVPYAAHGYGAYFCLSILDR 145

Query: 152 FWQPGLSPEQ 161
           +++P ++ E+
Sbjct: 146 YYKPDMTVEE 155

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 193

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
cd03757	212	proteasome_beta_type_1 proteasome beta type-1 subu	100.0
cd03759	195	proteasome_beta_type_3 proteasome beta type-3 subu	100.0
cd03758	193	proteasome_beta_type_2 proteasome beta type-2 subu	100.0
cd03761	188	proteasome_beta_type_5 proteasome beta type-5 subu	100.0
cd03760	197	proteasome_beta_type_4 proteasome beta type-4 subu	100.0
TIGR03634	185	arc_protsome_B proteasome endopeptidase complex, a	100.0
COG0638	236	PRE1 20S proteasome, alpha and beta subunits [Post	100.0
cd03762	188	proteasome_beta_type_6 proteasome beta type-6 subu	100.0
cd03764	188	proteasome_beta_archeal Archeal proteasome, beta s	100.0
PTZ00488	247	Proteasome subunit beta type-5; Provisional	100.0
cd03763	189	proteasome_beta_type_7 proteasome beta type-7 subu	100.0
cd01912	189	proteasome_beta proteasome beta subunit. The 20S p	100.0
TIGR03690	219	20S_bact_beta proteasome, beta subunit, bacterial	100.0
KOG0180|consensus	204		100.0
cd03750	227	proteasome_alpha_type_2 proteasome_alpha_type_2. T	100.0
cd03765	236	proteasome_beta_bacterial Bacterial proteasome, be	100.0
TIGR03633	224	arc_protsome_A proteasome endopeptidase complex, a	100.0
cd03752	213	proteasome_alpha_type_4 proteasome_alpha_type_4. T	100.0
cd03755	207	proteasome_alpha_type_7 proteasome_alpha_type_7. T	100.0
PTZ00246	253	proteasome subunit alpha; Provisional	100.0
PRK03996	241	proteasome subunit alpha; Provisional	100.0
PF00227	190	Proteasome: Proteasome subunit; InterPro: IPR00135	100.0
cd03749	211	proteasome_alpha_type_1 proteasome_alpha_type_1. T	100.0
cd03754	215	proteasome_alpha_type_6 proteasome_alpha_type_6. T	100.0
cd03751	212	proteasome_alpha_type_3 proteasome_alpha_type_3. T	100.0
KOG0179|consensus	235		100.0
cd01911	209	proteasome_alpha proteasome alpha subunit. The 20S	100.0
cd03756	211	proteasome_alpha_archeal proteasome_alpha_archeal.	100.0
cd01906	182	proteasome_protease_HslV proteasome_protease_HslV.	100.0
KOG0176|consensus	241		100.0
cd03753	213	proteasome_alpha_type_5 proteasome_alpha_type_5. T	100.0
KOG0177|consensus	200		100.0
TIGR03691	228	20S_bact_alpha proteasome, alpha subunit, bacteria	100.0
KOG0174|consensus	224		100.0
KOG0175|consensus	285		100.0
KOG0178|consensus	249		100.0
KOG0173|consensus	271		100.0
KOG0185|consensus	256		100.0
KOG0183|consensus	249		100.0
KOG0181|consensus	233		100.0
PRK05456	172	ATP-dependent protease subunit HslV; Provisional	100.0
KOG0184|consensus	254		100.0
cd01913	171	protease_HslV Protease HslV and the ATPase/chapero	100.0
TIGR03692	171	ATP_dep_HslV ATP-dependent protease HslVU, peptida	100.0
KOG0863|consensus	264		100.0
KOG0182|consensus	246		100.0
cd01901	164	Ntn_hydrolase The Ntn hydrolases (N-terminal nucle	99.98
COG5405	178	HslV ATP-dependent protease HslVU (ClpYQ), peptida	99.74
COG3484	255	Predicted proteasome-type protease [Posttranslatio	99.56
PF09894	194	DUF2121: Uncharacterized protein conserved in arch	97.56
COG4079	293	Uncharacterized protein conserved in archaea [Func	96.63
PRK09732	134	hypothetical protein; Provisional	85.79
KOG3361|consensus	157		84.28

>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit

Probab=100.00  E-value=2.4e-52  Score=332.34  Aligned_cols=199  Identities=24%  Similarity=0.373  Sum_probs=191.6

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|+|.+.+.++..++.+|||+|++|++++++|..+|++.+.+.++.+++.|+.++++++++
T Consensus         5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~   84 (212)
T cd03757           5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMST   84 (212)
T ss_pred             cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCH
Confidence            35799999999999999999999999988888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCC--------
Q psy1779          83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ--------  154 (204)
Q Consensus        83 ~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~--------  154 (204)
                      +.+++++++++|++|. +||++++|+||||+ +++|+||++||+|++. +++++|+|+|+++++++||+.|+        
T Consensus        85 ~~la~~ls~~ly~~R~-~P~~~~~iiaG~D~-~~~p~Ly~~D~~G~~~-~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~  161 (212)
T cd03757          85 EAIAQLLSTILYSRRF-FPYYVFNILAGIDE-EGKGVVYSYDPVGSYE-RETYSAGGSASSLIQPLLDNQVGRKNQNNVE  161 (212)
T ss_pred             HHHHHHHHHHHHhhcC-CCeEEEEEEEEEcC-CCCEEEEEEcCccCee-ecCEEEEeecHHHHHHHHHHHHHhhccCcCC
Confidence            9999999999999876 89999999999997 6789999999999999 79999999999999999999875        


Q ss_pred             -CCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEeccCCC
Q psy1779         155 -PGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD  204 (204)
Q Consensus       155 -~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~~~~  204 (204)
                       ++||++||++++.+||+.+.+||+.++++++|++|+++|++++.+++|+|
T Consensus       162 ~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g~~~~~~~~~~~  212 (212)
T cd03757         162 RTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDGIEEETFPLRKD  212 (212)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCCEEEEeeccCCC
Confidence             89999999999999999999999999999999999999999999999998

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit

Probab=100.00  E-value=2.4e-51  Score=322.68  Aligned_cols=193  Identities=39%  Similarity=0.747  Sum_probs=184.6

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|+|.+.+.....++.+|||+|++|++++++|..+|++.+.++++.+++.|+++++++++++
T Consensus         1 ~~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~   80 (195)
T cd03759           1 YNGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPK   80 (195)
T ss_pred             CCCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            46999999999999999999999988777777899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecc-eEEEccchhhHHHhhhccCCCCCCHHHH
Q psy1779          84 TFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTD-FVAGGSAQNMIMGIGESFWQPGLSPEQL  162 (204)
Q Consensus        84 ~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~-~~a~G~g~~~~~~~Le~~~~~~ms~~ea  162 (204)
                      .+++++++++|++|. +||+|++||||||+ +++|+||++||+|++. .++ ++|+|+|++.++++||+.|+++||.+||
T Consensus        81 ~la~~l~~~ly~~r~-~P~~v~~ii~G~D~-~~~p~Ly~~D~~G~~~-~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea  157 (195)
T cd03759          81 TFSSLISSLLYEKRF-GPYFVEPVVAGLDP-DGKPFICTMDLIGCPS-IPSDFVVSGTASEQLYGMCESLWRPDMEPDEL  157 (195)
T ss_pred             HHHHHHHHHHHHhcC-CCceEEEEEEEEcC-CCCEEEEEEcCCCccc-ccCCEEEEcccHHHHHHHHHhccCCCCCHHHH
Confidence            999999999999886 89999999999997 6789999999999987 466 9999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEe
Q psy1779         163 FEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKI  199 (204)
Q Consensus       163 ~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~  199 (204)
                      ++++.+||+.+.+||..++++++|++|+++|+++++|
T Consensus       158 ~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~~~  194 (195)
T cd03759         158 FETISQALLSAVDRDALSGWGAVVYIITKDKVTTRTL  194 (195)
T ss_pred             HHHHHHHHHHHHhhCcccCCceEEEEEcCCcEEEEec
Confidence            9999999999999999999999999999999999886

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit

Probab=100.00  E-value=5.8e-50  Score=314.35  Aligned_cols=191  Identities=20%  Similarity=0.306  Sum_probs=181.6

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      +|+|||+++||||||+|+|.+.+.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+.+++++++++.++
T Consensus         2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la   81 (193)
T cd03758           2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA   81 (193)
T ss_pred             ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            79999999999999999999999888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc-ccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHH
Q psy1779          87 AIASWELYAR-KLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEV  165 (204)
Q Consensus        87 ~~l~~~l~~~-r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~  165 (204)
                      +++++++|.+ |..|||++++|+||||+ +++|+||++||+|++. +++++|+|+|+++++++||+.|+++||+|||+++
T Consensus        82 ~~l~~~~~~~~~~~rP~~~~~li~G~d~-~~~p~Ly~~d~~G~~~-~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l  159 (193)
T cd03758          82 NFTRRELAESLRSRTPYQVNLLLAGYDK-VEGPSLYYIDYLGTLV-KVPYAAHGYGAYFCLSILDRYYKPDMTVEEALEL  159 (193)
T ss_pred             HHHHHHHHHHhhcCCCeEEEEEEEEEcC-CCCcEEEEECCCcceE-ECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHH
Confidence            9999999654 33269999999999997 6899999999999999 6999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccCCCEEEEEEcCCceEEEEe
Q psy1779         166 CSQVVIQACERDTKSGWGATVYVVEPDKVTIRKI  199 (204)
Q Consensus       166 ~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~  199 (204)
                      +.+|++.+.+||+.++++++|++|+++|++++++
T Consensus       160 ~~~a~~~~~~rd~~~~~~i~i~ii~~~g~~~~~~  193 (193)
T cd03758         160 MKKCIKELKKRFIINLPNFTVKVVDKDGIRDLEL  193 (193)
T ss_pred             HHHHHHHHHHhccccCCceEEEEEcCCCeEeCCC
Confidence            9999999999999999999999999999987653

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit

Probab=100.00  E-value=2.8e-49  Score=309.32  Aligned_cols=187  Identities=22%  Similarity=0.240  Sum_probs=180.7

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      +|+|||+++||||||+|+|.+++.++.+++.+|||+|++|++++++|..+|++.|.++++.+++.|+.+++++|+++.++
T Consensus         1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la   80 (188)
T cd03761           1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS   80 (188)
T ss_pred             CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            68999999999999999999998888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779          87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC  166 (204)
Q Consensus        87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~  166 (204)
                      +++++++|.+|. .||++++|+||||+  ++|+||++||+|++. +++++|+|+|+++++++||+.|+++||.+||++++
T Consensus        81 ~~ls~~l~~~~~-~~~~v~~li~G~D~--~g~~L~~~dp~G~~~-~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~  156 (188)
T cd03761          81 KLLSNMLYQYKG-MGLSMGTMICGWDK--TGPGLYYVDSDGTRL-KGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLA  156 (188)
T ss_pred             HHHHHHHHhcCC-CCeEEEEEEEEEeC--CCCEEEEEcCCceEE-EcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence            999999999876 79999999999995  789999999999999 79999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCEEEEEEcCCceEEE
Q psy1779         167 SQVVIQACERDTKSGWGATVYVVEPDKVTIR  197 (204)
Q Consensus       167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~  197 (204)
                      .+||+.+.+||..++++++|++|+++|+++.
T Consensus       157 ~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~~  187 (188)
T cd03761         157 RRAIYHATHRDAYSGGNVNLYHVREDGWRKI  187 (188)
T ss_pred             HHHHHHHHHhcccCCCCeEEEEEcCCceEEc
Confidence            9999999999999999999999999999753

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit

Probab=100.00  E-value=2.6e-49  Score=311.66  Aligned_cols=191  Identities=20%  Similarity=0.276  Sum_probs=181.1

Q ss_pred             CCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHH-hhHHhcCCCCCHH
Q psy1779           5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTA-NYVASEQSPISPD   83 (204)
Q Consensus         5 ~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~   83 (204)
                      .|+|+|||+++||||||+|+|.+++.++..++.+|||+|++|++++++|..+|++.+.+++|.+++ .++.+++++++++
T Consensus         1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~   80 (197)
T cd03760           1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK   80 (197)
T ss_pred             CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence            489999999999999999999998899988999999999999999999999999999999999986 5667889999999


Q ss_pred             HHHHHHHHHHHhccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCC--CCCHH
Q psy1779          84 TFAAIASWELYARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP--GLSPE  160 (204)
Q Consensus        84 ~la~~l~~~l~~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--~ms~~  160 (204)
                      .+++++++++|++|. .|||+|++|+||||+ +++|+||++||+|++. +++++|+|+|+++++++||+.|++  +||+|
T Consensus        81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~-~~gp~Ly~~D~~G~~~-~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~e  158 (197)
T cd03760          81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDN-EGEPFLGYVDLLGTAY-EDPHVATGFGAYLALPLLREAWEKKPDLTEE  158 (197)
T ss_pred             HHHHHHHHHHHHHhhcCCCceEEEEEEEEcC-CCCEEEEEEcCCccEE-ECCEeEEccHHHHHHHHHHhhcCCCCCCCHH
Confidence            999999999999864 389999999999996 6899999999999999 699999999999999999999999  99999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEE
Q psy1779         161 QLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR  197 (204)
Q Consensus       161 ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~  197 (204)
                      ||++++.+||+.+.+||..++++++|++|+++|++.+
T Consensus       159 ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g~~~~  195 (197)
T cd03760         159 EARALIEECMKVLYYRDARSINKYQIAVVTKEGVEIE  195 (197)
T ss_pred             HHHHHHHHHHHHHHHhccccCCceEEEEECCCCEEeC
Confidence            9999999999999999999999999999999998754

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit

Probab=100.00  E-value=3.6e-48  Score=302.31  Aligned_cols=185  Identities=23%  Similarity=0.340  Sum_probs=179.3

Q ss_pred             CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779           6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF   85 (204)
Q Consensus         6 g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   85 (204)
                      |+|+|||+++||||||+|+|.+.+.++..++.+|||+|++|++++++|..+|++.+.++++.+++.|+.+++++++++.+
T Consensus         1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (185)
T TIGR03634         1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL   80 (185)
T ss_pred             CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence            78999999999999999999998999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHH
Q psy1779          86 AAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEV  165 (204)
Q Consensus        86 a~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~  165 (204)
                      ++++++++|.++. |||+|++|+||+|+  ++|+||++||+|++. +++++++|+++++++++||+.|+++||++||+++
T Consensus        81 a~~l~~~~~~~~~-rP~~v~~ivaG~d~--~g~~Ly~~d~~G~~~-~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l  156 (185)
T TIGR03634        81 ATLLSNILNSNRF-FPFIVQLLVGGVDE--EGPHLYSLDPAGGII-EDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKL  156 (185)
T ss_pred             HHHHHHHHHhcCC-CCeEEEEEEEEEeC--CCCEEEEECCCCCeE-ECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHH
Confidence            9999999998866 99999999999996  679999999999999 6999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccCCCEEEEEEcCCce
Q psy1779         166 CSQVVIQACERDTKSGWGATVYVVEPDKV  194 (204)
Q Consensus       166 ~~~~l~~~~~~d~~~~~~~~v~~i~~~g~  194 (204)
                      +.+||+.+.+||..++++++|++|+++|+
T Consensus       157 ~~~~l~~~~~r~~~~~~~~~v~ii~~~g~  185 (185)
T TIGR03634       157 AVRAIKSAIERDVASGNGIDVAVITKDGV  185 (185)
T ss_pred             HHHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence            99999999999999999999999999985

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.4e-48  Score=312.43  Aligned_cols=190  Identities=23%  Similarity=0.280  Sum_probs=180.3

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ..|+|+|||+++||||||+|+|.+++.++..++.+|||+|+|||+|++||+.+|++.|.++++.+++.|++.++++|+++
T Consensus        28 ~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v~  107 (236)
T COG0638          28 RGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISVE  107 (236)
T ss_pred             cCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            34699999999999999999999999999889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHH
Q psy1779          84 TFAAIASWELYARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQL  162 (204)
Q Consensus        84 ~la~~l~~~l~~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea  162 (204)
                      .+++++++++|.++. .|||+|++|+||+|+  ++|+||++||+|++. +++++|+|+|++.++++||+.|+++|++|||
T Consensus       108 ~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~--~~p~Ly~~Dp~G~~~-~~~~~a~Gsgs~~a~~~Le~~y~~~m~~eea  184 (236)
T COG0638         108 ALAKLLSNILQEYTQSGRPYGVSLLVAGVDD--GGPRLYSTDPSGSYN-EYKATAIGSGSQFAYGFLEKEYREDLSLEEA  184 (236)
T ss_pred             HHHHHHHHHHHHhccCcccceEEEEEEEEcC--CCCeEEEECCCCcee-ecCEEEEcCCcHHHHHHHHhhccCCCCHHHH
Confidence            999999999988743 389999999999996  899999999999999 7999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCEEEEEEcC-CceEE
Q psy1779         163 FEVCSQVVIQACERDTKSGWGATVYVVEP-DKVTI  196 (204)
Q Consensus       163 ~~~~~~~l~~~~~~d~~~~~~~~v~~i~~-~g~~~  196 (204)
                      ++++.+||..+.+||..++++++|++|++ +|.++
T Consensus       185 i~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~  219 (236)
T COG0638         185 IELAVKALRAAIERDAASGGGIEVAVITKDEGFRK  219 (236)
T ss_pred             HHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEE
Confidence            99999999999999998999999999999 55554

>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit

Probab=100.00  E-value=8.5e-48  Score=300.96  Aligned_cols=187  Identities=20%  Similarity=0.276  Sum_probs=180.0

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      +|+|||+++||||||+|+|.+.|.++..++.+|||+|++|++++++|..+|++.|.+.++.+++.|+.+++++++++.++
T Consensus         1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a   80 (188)
T cd03762           1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA   80 (188)
T ss_pred             CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence            68999999999999999999999888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779          87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC  166 (204)
Q Consensus        87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~  166 (204)
                      +++++++|++|  +||++++||||+|+ +++|+||.+||+|++. +++++++|+|+++++++||+.|+++||++||++++
T Consensus        81 ~~l~~~~~~~~--~~~~~~~ii~G~d~-~~gp~ly~~d~~G~~~-~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~  156 (188)
T cd03762          81 SLFKNLCYNYK--EMLSAGIIVAGWDE-QNGGQVYSIPLGGMLI-RQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFV  156 (188)
T ss_pred             HHHHHHHHhcc--ccceeeEEEEEEcC-CCCcEEEEECCCCCEE-ecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence            99999999886  79999999999997 6789999999999999 68999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCEEEEEEcCCceEEE
Q psy1779         167 SQVVIQACERDTKSGWGATVYVVEPDKVTIR  197 (204)
Q Consensus       167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~  197 (204)
                      ++||+.+.+||+.++++++|++|+++|++++
T Consensus       157 ~~al~~~~~rd~~~~~~~~i~~i~~~g~~~~  187 (188)
T cd03762         157 KNALSLAMSRDGSSGGVIRLVIITKDGVERK  187 (188)
T ss_pred             HHHHHHHHHhccccCCCEEEEEECCCCEEEe
Confidence            9999999999999999999999999999754

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit

Probab=100.00  E-value=2e-47  Score=298.83  Aligned_cols=186  Identities=21%  Similarity=0.293  Sum_probs=179.7

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      +|+|||+++||||||+|+|.+.|.++..++.+||++|++|++++++|..+|++.|.+.++.+++.|+.+++++++++.++
T Consensus         1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~   80 (188)
T cd03764           1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA   80 (188)
T ss_pred             CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            68999999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779          87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC  166 (204)
Q Consensus        87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~  166 (204)
                      +++++++|.++. |||+|++|+||+|+  ++|+||.+||+|++. +++++|+|+|+++++++||+.|+++||++||++++
T Consensus        81 ~~i~~~~~~~~~-~P~~~~~lvaG~d~--~~~~ly~~D~~G~~~-~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~  156 (188)
T cd03764          81 TLLSNILNSSKY-FPYIVQLLIGGVDE--EGPHLYSLDPLGSII-EDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLA  156 (188)
T ss_pred             HHHHHHHHhcCC-CCcEEEEEEEEEeC--CCCEEEEECCCCCEE-EcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence            999999999876 99999999999995  789999999999999 69999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779         167 SQVVIQACERDTKSGWGATVYVVEPDKVTI  196 (204)
Q Consensus       167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~  196 (204)
                      .+||+.+.+||+.++++++|++|+++|++.
T Consensus       157 ~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~  186 (188)
T cd03764         157 IRAIKSAIERDSASGDGIDVVVITKDGYKE  186 (188)
T ss_pred             HHHHHHHHhhcCCCCCcEEEEEECCCCeEe
Confidence            999999999999999999999999999664

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PTZ00488 Proteasome subunit beta type-5; Provisional

Probab=100.00  E-value=4.9e-47  Score=307.28  Aligned_cols=190  Identities=19%  Similarity=0.213  Sum_probs=180.8

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      ..+|+|+|||+++||||||+|+|.+.+.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++|++
T Consensus        36 ~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv  115 (247)
T PTZ00488         36 FAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELISV  115 (247)
T ss_pred             cCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHH
Q psy1779          83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQL  162 (204)
Q Consensus        83 ~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea  162 (204)
                      +.+++++++++|.+|. .|+.+++|+||||+  .+|+||++||+|++. +++++|+|+|+.+++++||+.|+++||.+||
T Consensus       116 ~~la~~ls~~l~~~R~-~~~~v~~iiaG~D~--~gp~Ly~vDp~Gs~~-~~~~~a~G~gs~~~~~~Le~~~k~dms~eEa  191 (247)
T PTZ00488        116 AAASKILANIVWNYKG-MGLSMGTMICGWDK--KGPGLFYVDNDGTRL-HGNMFSCGSGSTYAYGVLDAGFKWDLNDEEA  191 (247)
T ss_pred             HHHHHHHHHHHHhcCC-CCeeEEEEEEEEeC--CCCEEEEEcCCccee-ecCCEEEccCHHHHHHHHHhcCcCCCCHHHH
Confidence            9999999999998865 56777789999996  679999999999999 6999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779         163 FEVCSQVVIQACERDTKSGWGATVYVVEPDKVTI  196 (204)
Q Consensus       163 ~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~  196 (204)
                      ++++.+||+.+.+||..++++++|++|+++|++.
T Consensus       192 i~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g~~~  225 (247)
T PTZ00488        192 QDLGRRAIYHATFRDAYSGGAINLYHMQKDGWKK  225 (247)
T ss_pred             HHHHHHHHHHHHHhccccCCCeEEEEEcCCccEE
Confidence            9999999999999999999999999999999654

>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit

Probab=100.00  E-value=9.9e-47  Score=295.19  Aligned_cols=187  Identities=18%  Similarity=0.213  Sum_probs=179.2

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      +|+|||+|+||||||+|+|.++|.++..++.+|||+|++|++++++|..+|++.|.+.++.+++.|+++++++++++.++
T Consensus         1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (189)
T cd03763           1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL   80 (189)
T ss_pred             CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            68999999999999999999999888888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779          87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC  166 (204)
Q Consensus        87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~  166 (204)
                      +++++++|.++  .||+|++|+||||+  ++|+||.+||+|++. +++++|+|++++.++++||+.|+++||++||++++
T Consensus        81 ~~l~~~l~~~~--~p~~v~~ivaG~d~--~g~~ly~~d~~G~~~-~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~  155 (189)
T cd03763          81 TMLKQHLFRYQ--GHIGAALVLGGVDY--TGPHLYSIYPHGSTD-KLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLV  155 (189)
T ss_pred             HHHHHHHHHcC--CccceeEEEEeEcC--CCCEEEEECCCCCEE-ecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence            99999998765  59999999999996  679999999999999 79999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCEEEEEEcCCceEEEE
Q psy1779         167 SQVVIQACERDTKSGWGATVYVVEPDKVTIRK  198 (204)
Q Consensus       167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~  198 (204)
                      .+||+.+.+||+.++++++|++|+++|+++.+
T Consensus       156 ~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~~~  187 (189)
T cd03763         156 CEAIEAGIFNDLGSGSNVDLCVITKDGVEYLR  187 (189)
T ss_pred             HHHHHHHHHhcCcCCCceEEEEEcCCcEEEec
Confidence            99999999999999999999999999998643

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01912 proteasome_beta proteasome beta subunit

Probab=100.00  E-value=1.5e-46  Score=293.95  Aligned_cols=188  Identities=25%  Similarity=0.343  Sum_probs=181.3

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      +|+||++++||||||+|+|.+.+......+.+|||+|+++++++++|+.+|++.+.++++.+++.|+..++++++++.++
T Consensus         1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~   80 (189)
T cd01912           1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA   80 (189)
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            68999999999999999999999888789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779          87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC  166 (204)
Q Consensus        87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~  166 (204)
                      +++++++|+++. +||++++||||+|+ +++|+||.+||+|++. +++++++|+++++++++||+.|+++||++||++++
T Consensus        81 ~~l~~~~~~~~~-~P~~~~~iv~G~d~-~~~~~l~~id~~G~~~-~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~  157 (189)
T cd01912          81 NLLSNILYSYRG-FPYYVSLIVGGVDK-GGGPFLYYVDPLGSLI-EAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELV  157 (189)
T ss_pred             HHHHHHHHhcCC-CCeEEEEEEEEEcC-CCCeEEEEECCCCCeE-ecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHH
Confidence            999999999876 89999999999997 6899999999999999 69999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCEEEEEEcCCceEEE
Q psy1779         167 SQVVIQACERDTKSGWGATVYVVEPDKVTIR  197 (204)
Q Consensus       167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~  197 (204)
                      .+||+.+.+||+.++++++|++|+++|++.+
T Consensus       158 ~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~~  188 (189)
T cd01912         158 KKAIDSAIERDLSSGGGVDVAVITKDGVEEL  188 (189)
T ss_pred             HHHHHHHHHhcCccCCcEEEEEECCCCEEEc
Confidence            9999999999999999999999999998754

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type

Probab=100.00  E-value=9.9e-46  Score=295.57  Aligned_cols=192  Identities=19%  Similarity=0.249  Sum_probs=176.5

Q ss_pred             CCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHH
Q psy1779           5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDT   84 (204)
Q Consensus         5 ~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (204)
                      +|+|+|||+++||||||+|+|.+.|.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+.+++++++++.
T Consensus         1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~   80 (219)
T TIGR03690         1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG   80 (219)
T ss_pred             CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc--cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHH
Q psy1779          85 FAAIASWELYARK--LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQL  162 (204)
Q Consensus        85 la~~l~~~l~~~r--~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea  162 (204)
                      ++++|++++|...  ..|||++++||||||+.+++|+||++||+|+.+.+++++|+|+|+++++++||+.|+++||.+||
T Consensus        81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eea  160 (219)
T TIGR03690        81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDA  160 (219)
T ss_pred             HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHH
Confidence            9999999997652  23999999999999962368999999999963436789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCC-------EEEEEEcCCceEE
Q psy1779         163 FEVCSQVVIQACERDTKSGWG-------ATVYVVEPDKVTI  196 (204)
Q Consensus       163 ~~~~~~~l~~~~~~d~~~~~~-------~~v~~i~~~g~~~  196 (204)
                      ++++.+||..+.+||..+++.       ++|++|+++|++.
T Consensus       161 i~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g~~~  201 (219)
T TIGR03690       161 LRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADGARR  201 (219)
T ss_pred             HHHHHHHHHHHHhcccccCCcccccccccEEEEEccCceEE
Confidence            999999999999999866664       3999999999764

Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.

>KOG0180|consensus

Probab=100.00  E-value=8.2e-47  Score=279.33  Aligned_cols=201  Identities=37%  Similarity=0.683  Sum_probs=196.3

Q ss_pred             CCCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCC
Q psy1779           2 SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPIS   81 (204)
Q Consensus         2 ~~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   81 (204)
                      .+++|++++|+++|+||.||+|.|.......++.+++|||+++|++++|.+|+..|++.+.++++...+.|+++++++|.
T Consensus         4 ~synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~   83 (204)
T KOG0180|consen    4 MSYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIK   83 (204)
T ss_pred             eeecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccC
Confidence            46899999999999999999999999888888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHH
Q psy1779          82 PDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ  161 (204)
Q Consensus        82 ~~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~e  161 (204)
                      |+.+++++|.++|++|+ .||.+..+|||+|+ +++|+|..+|..|+.....+|++.|.+++..++.+|..|+|+|..|+
T Consensus        84 P~~~s~mvS~~lYekRf-gpYf~~PvVAGl~~-~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~  161 (204)
T KOG0180|consen   84 PETFSSMVSSLLYEKRF-GPYFTEPVVAGLDD-DNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDE  161 (204)
T ss_pred             cHHHHHHHHHHHHHhhc-CCcccceeEeccCC-CCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHH
Confidence            99999999999999999 99999999999999 99999999999999887789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEeccCCC
Q psy1779         162 LFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD  204 (204)
Q Consensus       162 a~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~~~~  204 (204)
                      .++.+.++|.++.+||+.|||+..|.+|+||.++++.+|+|||
T Consensus       162 LFetisQa~Lna~DRDalSGwGa~vyiI~kdkv~~r~lK~RmD  204 (204)
T KOG0180|consen  162 LFETISQALLNAVDRDALSGWGAVVYIITKDKVTKRTLKGRMD  204 (204)
T ss_pred             HHHHHHHHHHhHhhhhhhccCCeEEEEEccchhhhhhhhhcCC
Confidence            9999999999999999999999999999999999999999998

>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2

Probab=100.00  E-value=1.9e-45  Score=295.55  Aligned_cols=189  Identities=15%  Similarity=0.176  Sum_probs=175.6

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|+|.+ +.++..++.+||++|++|++++++|..+|++.+.+.++.+++.|+.++++++++
T Consensus        24 v~~G~t~igik~~dgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v  102 (227)
T cd03750          24 VSSGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIPV  102 (227)
T ss_pred             HHcCCCEEEEEeCCEEEEEEeecCC-ccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            3689999999999999999999998 567777889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH--hccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779          83 DTFAAIASWELY--ARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP  159 (204)
Q Consensus        83 ~~la~~l~~~l~--~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~  159 (204)
                      +.++++++++++  .++. .|||+|++|+||||+  .+|+||++||+|++. +++++|+|+|++.++++||+.|+++||+
T Consensus       103 ~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~--~g~~Ly~~d~~G~~~-~~~~~a~G~g~~~~~~~Le~~~~~~ms~  179 (227)
T cd03750         103 SQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDE--GGPYLYQVDPSGSYF-TWKATAIGKNYSNAKTFLEKRYNEDLEL  179 (227)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeC--CCCEEEEECCCCCEE-eeeEEEECCCCHHHHHHHHhhccCCCCH
Confidence            999999999984  4443 389999999999996  589999999999999 6999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCEEEEEEcCC-ceEE
Q psy1779         160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEPD-KVTI  196 (204)
Q Consensus       160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~-g~~~  196 (204)
                      +||++++++||..+.+|+ .++.+++|.+|+++ |.+.
T Consensus       180 eeai~l~~~~l~~~~~~~-l~~~~iev~iv~~~~~~~~  216 (227)
T cd03750         180 EDAIHTAILTLKEGFEGQ-MTEKNIEIGICGETKGFRL  216 (227)
T ss_pred             HHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCEEE
Confidence            999999999999999987 58899999999986 5653

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit

Probab=100.00  E-value=6.3e-45  Score=292.21  Aligned_cols=186  Identities=13%  Similarity=0.021  Sum_probs=170.0

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEee----CcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCC-CCC
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMS----PHLYLINPGLCADGMQFAEKMTLRTANYVASEQS-PIS   81 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~~~   81 (204)
                      |.+|||+++||||||+|+|.+.+.... ++.+|||+|+    +|++|+.||..+|++.|.+++|.+++.|++++++ +++
T Consensus         1 ~~~vGIk~kdGVVLaadkr~~~~l~~~-~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~   79 (236)
T cd03765           1 TYCLGIKLDAGLVFASDSRTNAGVDNI-STYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT   79 (236)
T ss_pred             CeEEEEEeCCeEEEEEccCccCCCccc-cccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence            468999999999999999987764443 4789999998    8999999999999999999999999999999999 899


Q ss_pred             HHHHHHHHHHHHHhc----cc-----CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeec----ceEEEccchhhHHHh
Q psy1779          82 PDTFAAIASWELYAR----KL-----TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKT----DFVAGGSAQNMIMGI  148 (204)
Q Consensus        82 ~~~la~~l~~~l~~~----r~-----~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~----~~~a~G~g~~~~~~~  148 (204)
                      ++.+|+++++++++.    ..     .|||+|++|+||||+ +.+|+||++||+|++. ++    +|+|+|. +++++++
T Consensus        80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~-~~Gp~LY~idpsG~~~-e~~a~~~~~AiG~-~~~a~~~  156 (236)
T cd03765          80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIK-GEEPRLFLIYPQGNFI-EATPDTPFLQIGE-TKYGKPI  156 (236)
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEEC-CCCCEEEEECCCCCEE-eecCCCceeeeCC-chhhHHH
Confidence            999999999986541    21     289999999999996 6789999999999999 57    5789996 6999999


Q ss_pred             hhccCCCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779         149 GESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTI  196 (204)
Q Consensus       149 Le~~~~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~  196 (204)
                      ||+.|+++||++||++++.+||..+++||..++.+++|++|+++|++.
T Consensus       157 Lek~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G~~~  204 (236)
T cd03765         157 LDRVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDSLQV  204 (236)
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCCeee
Confidence            999999999999999999999999999999999999999999999876

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit

Probab=100.00  E-value=8.5e-45  Score=291.26  Aligned_cols=194  Identities=18%  Similarity=0.216  Sum_probs=179.7

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|+|.+ +.+...++.+||++|++|+++++||..+|++.+.+.++.+++.|++++++++++
T Consensus        26 v~~G~tvigi~~~dgvvlaad~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~  104 (224)
T TIGR03633        26 VKRGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPIDV  104 (224)
T ss_pred             HHcCCCEEEEEECCEEEEEEeccCC-ccccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            3689999999999999999999997 567767889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh--ccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779          83 DTFAAIASWELYA--RKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP  159 (204)
Q Consensus        83 ~~la~~l~~~l~~--~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~  159 (204)
                      +.++++++++++.  ++. .|||+|++||||+|+  ++|+||.+||.|++. +++++|+|+++.+++++||+.|+++|++
T Consensus       105 ~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~--~~~~Ly~~D~~G~~~-~~~~~a~G~g~~~~~~~L~~~~~~~~~~  181 (224)
T TIGR03633       105 ETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD--GGPRLFETDPSGALL-EYKATAIGAGRQAVTEFLEKEYREDLSL  181 (224)
T ss_pred             HHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC--CcCEEEEECCCCCee-cceEEEECCCCHHHHHHHHHhccCCCCH
Confidence            9999999999754  332 389999999999995  789999999999999 6999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEecc
Q psy1779         160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIAT  201 (204)
Q Consensus       160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~  201 (204)
                      +||++++.+||..+.+ |..++++++|++|+++|..++.++.
T Consensus       182 eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~  222 (224)
T TIGR03633       182 DEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSV  222 (224)
T ss_pred             HHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCC
Confidence            9999999999999988 8899999999999999977776654

This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4

Probab=100.00  E-value=6e-45  Score=290.06  Aligned_cols=185  Identities=12%  Similarity=0.142  Sum_probs=172.7

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|+|.+.+..+.+++.+|||+|++|+++++||..+|++.+.++++.+++.|++++++++++
T Consensus        26 ~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v  105 (213)
T cd03752          26 ISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIPV  105 (213)
T ss_pred             HhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            36899999999999999999999998877767789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH--Hhcc-cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779          83 DTFAAIASWEL--YARK-LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP  159 (204)
Q Consensus        83 ~~la~~l~~~l--~~~r-~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~  159 (204)
                      +.+++.++.++  |++. ..|||+|++|++|||+ +.+|+||.+||+|++. +++++|+|+++.+++++||+.|+++||+
T Consensus       106 ~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~-~~g~~ly~~d~~G~~~-~~~~~a~G~gs~~~~~~Le~~y~~~ms~  183 (213)
T cd03752         106 EQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDK-HYGFQLYQSDPSGNYS-GWKATAIGNNNQAAQSLLKQDYKDDMTL  183 (213)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeC-CCCCEEEEECCCCCee-eeeEEEECCCcHHHHHHHHHhccCCCCH
Confidence            99999999886  4331 2289999999999996 6789999999999999 6999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCEEEEEE
Q psy1779         160 EQLFEVCSQVVIQACERDTKSGWGATVYVV  189 (204)
Q Consensus       160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i  189 (204)
                      +||++++.+||..+.+||..++.+++|.+|
T Consensus       184 eea~~l~~~al~~~~~r~~~~~~~~ei~~~  213 (213)
T cd03752         184 EEALALAVKVLSKTMDSTKLTSEKLEFATL  213 (213)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence            999999999999999999999999999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7

Probab=100.00  E-value=1.9e-44  Score=285.97  Aligned_cols=181  Identities=18%  Similarity=0.283  Sum_probs=167.8

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|++.+. .++..+..+||++|++|++++++|+.+|++.+.++++.+++.|+++++++|++
T Consensus        24 v~~G~t~Igik~~dgVvlaad~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~  102 (207)
T cd03755          24 VRKGTTAVGVRGKDCVVLGVEKKSVA-KLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVTV  102 (207)
T ss_pred             HHcCCCEEEEEeCCEEEEEEecCCCC-cccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            46899999999999999999998765 45556678999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH--HhcccC-CCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779          83 DTFAAIASWEL--YARKLT-SPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP  159 (204)
Q Consensus        83 ~~la~~l~~~l--~~~r~~-~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~  159 (204)
                      +.+++++++++  |+++.. |||+|++|+||||+ +++|+||++||+|++. +++++|+|+|++.++++||+.|+++||+
T Consensus       103 ~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~-~~~p~Ly~iD~~G~~~-~~~~~a~G~gs~~~~~~Le~~~~~~ms~  180 (207)
T cd03755         103 EYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDP-DGTPRLYQTDPSGTYS-AWKANAIGRNSKTVREFLEKNYKEEMTR  180 (207)
T ss_pred             HHHHHHHHHHHHHHhcccCcccceeEEEEEEEeC-CCCeEEEEECCCcCEE-cceEEEECCCCHHHHHHHHhhccCCCCH
Confidence            99999999998  555533 89999999999997 6799999999999999 6999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCEEEEEE
Q psy1779         160 EQLFEVCSQVVIQACERDTKSGWGATVYVV  189 (204)
Q Consensus       160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i  189 (204)
                      +||++++.+||..+.+   .++.++||+++
T Consensus       181 eeai~l~~~~l~~~~~---~~~~~~e~~~~  207 (207)
T cd03755         181 DDTIKLAIKALLEVVQ---SGSKNIELAVM  207 (207)
T ss_pred             HHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence            9999999999999987   67889999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PTZ00246 proteasome subunit alpha; Provisional

Probab=100.00  E-value=3.2e-44  Score=292.66  Aligned_cols=189  Identities=15%  Similarity=0.173  Sum_probs=176.8

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|+|.+++.++..++.+|||+|++|++++++|..+|++.+.+.+|.+++.|+..+++++++
T Consensus        28 v~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v  107 (253)
T PTZ00246         28 INNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQPV  107 (253)
T ss_pred             HHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            36799999999999999999999999877777778999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh--ccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779          83 DTFAAIASWELYA--RKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP  159 (204)
Q Consensus        83 ~~la~~l~~~l~~--~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~  159 (204)
                      +.+++.++..++.  ++. .|||+|++|+||||+ +++|+||++||+|++. +++++|+|+++++++++||+.|+++||+
T Consensus       108 ~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~-~~gp~Ly~~D~~Gs~~-~~~~~a~G~gs~~~~~~Le~~~~~~ms~  185 (253)
T PTZ00246        108 EQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDE-NLGYQLYHTDPSGNYS-GWKATAIGQNNQTAQSILKQEWKEDLTL  185 (253)
T ss_pred             HHHHHHHHHHHHHhccccCcccCCEEEEEEEEeC-CCCcEEEEECCCCCEe-cceEEEECCCcHHHHHHHHHhccCCCCH
Confidence            9999999988654  322 289999999999997 6789999999999999 6999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCc
Q psy1779         160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK  193 (204)
Q Consensus       160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g  193 (204)
                      +||++++.+||+.+.++|..++++++|++|+++|
T Consensus       186 eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~  219 (253)
T PTZ00246        186 EQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGE  219 (253)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC
Confidence            9999999999999999999999999999999986

>PRK03996 proteasome subunit alpha; Provisional

Probab=100.00  E-value=5e-44  Score=289.69  Aligned_cols=193  Identities=18%  Similarity=0.213  Sum_probs=177.8

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|+|.+ +.+...++.+||++|++|++++++|..+|++.+.++++.+++.|+.++++++++
T Consensus        33 v~~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~  111 (241)
T PRK03996         33 VKRGTTAVGVKTKDGVVLAVDKRIT-SPLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIGV  111 (241)
T ss_pred             HHhCCCEEEEEeCCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            4689999999999999999999998 566667789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779          83 DTFAAIASWELYAR--KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP  159 (204)
Q Consensus        83 ~~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~  159 (204)
                      +.++++++++++..  +. .|||++++||||||.  ++|+||.+||+|++. +++++|+|++++.++++||+.|+++|++
T Consensus       112 ~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~--~gp~Ly~id~~G~~~-~~~~~a~G~g~~~~~~~Le~~~~~~~s~  188 (241)
T PRK03996        112 ETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDD--GGPRLFETDPSGAYL-EYKATAIGAGRDTVMEFLEKNYKEDLSL  188 (241)
T ss_pred             HHHHHHHHHHHHHhcCCCCccchheEEEEEEEeC--CcCEEEEECCCCCee-cceEEEECCCcHHHHHHHHHhcccCCCH
Confidence            99999999998543  32 389999999999995  689999999999999 6999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEec
Q psy1779         160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIA  200 (204)
Q Consensus       160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~  200 (204)
                      +||++++.+||..+.++ ..++++++|++|+++|..++.++
T Consensus       189 eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~~  228 (241)
T PRK03996        189 EEAIELALKALAKANEG-KLDPENVEIAYIDVETKKFRKLS  228 (241)
T ss_pred             HHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEECC
Confidence            99999999999999886 46889999999999987666654

>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins

Probab=100.00  E-value=9.2e-44  Score=278.10  Aligned_cols=183  Identities=25%  Similarity=0.357  Sum_probs=169.7

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecC-CCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEY-ENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      ++|+|+|||+++|||+||+|+|.+.|..+..++ .+|||+|++|++++++|..+|++.+.++++.+++.|++.+++++++
T Consensus         2 ~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~   81 (190)
T PF00227_consen    2 NNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPISP   81 (190)
T ss_dssp             HTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCH
T ss_pred             CCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccccc
Confidence            589999999999999999999999988886666 6999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH----HhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeec-ceEEEccchhhHHHhhhccCCCCC
Q psy1779          83 DTFAAIASWEL----YARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKT-DFVAGGSAQNMIMGIGESFWQPGL  157 (204)
Q Consensus        83 ~~la~~l~~~l----~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~-~~~a~G~g~~~~~~~Le~~~~~~m  157 (204)
                      +.+++.+++.+    +..+. ||+++++|+||+|+ +++|+||.+||+|++. ++ +++|+|+|++.++++||+.|+++|
T Consensus        82 ~~l~~~~~~~~~~~~~~~~~-~p~~~~~li~G~d~-~~~~~l~~vd~~G~~~-~~~~~~aiG~g~~~~~~~l~~~~~~~~  158 (190)
T PF00227_consen   82 EYLAKAIASLIQNYTYRSGR-RPYGVSLLIAGYDE-DGGPQLYSVDPSGSYI-ECKRFAAIGSGSQFAQPILEKLYKPDL  158 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHTTT-STTSEEEEEEEEET-TTEEEEEEEETTSEEE-EBSSEEEESTTHHHHHHHHHHHHTTTS
T ss_pred             hhhhhhhHHHHhhhcccccc-cCccccceeeeecc-ccccceeeeccccccc-cccccccchhcchhhhHHHHhhccCCC
Confidence            96666666654    33333 89999999999997 7789999999999999 68 699999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhccccCCCEEEEEE
Q psy1779         158 SPEQLFEVCSQVVIQACERDTKSGWGATVYVV  189 (204)
Q Consensus       158 s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i  189 (204)
                      |++||++++.+||+.+.++|..++++++|++|
T Consensus       159 ~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi  190 (190)
T PF00227_consen  159 SLEEAIELALKALKEAIDRDILSGDNIEVAVI  190 (190)
T ss_dssp             SHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence            99999999999999999999999999999987

They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....

>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1

Probab=100.00  E-value=7.9e-44  Score=283.16  Aligned_cols=182  Identities=16%  Similarity=0.179  Sum_probs=168.1

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|+|.+.+   ...+.+|||+|++|+++++||+.+|++.+.++++.+++.|++++++++++
T Consensus        24 v~~G~t~IgIk~~dgVvlaad~r~~~~---l~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v  100 (211)
T cd03749          24 VKQGSATVGLKSKTHAVLVALKRATSE---LSSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIPV  100 (211)
T ss_pred             HhcCCCEEEEEeCCEEEEEEeccCccc---cCCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            367999999999999999999997764   34567999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh--ccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCC--CCC
Q psy1779          83 DTFAAIASWELYA--RKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ--PGL  157 (204)
Q Consensus        83 ~~la~~l~~~l~~--~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~--~~m  157 (204)
                      +.+++.++.+++.  ++. .|||+|++|++|||+  .+|+||++||+|++. +++++|+|++++.++++||+.|+  ++|
T Consensus       101 ~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~--~gp~Ly~~Dp~G~~~-~~~~~a~G~g~~~a~~~Le~~~~~~~~m  177 (211)
T cd03749         101 SRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDE--SGPHLFQTCPSGNYF-EYKATSIGARSQSARTYLERHFEEFEDC  177 (211)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcC--CCCeEEEECCCcCEe-eeeEEEECCCcHHHHHHHHHhhccccCC
Confidence            9999999998765  332 389999999999996  589999999999999 69999999999999999999998  699


Q ss_pred             CHHHHHHHHHHHHHHHHhhcc-ccCCCEEEEEEc
Q psy1779         158 SPEQLFEVCSQVVIQACERDT-KSGWGATVYVVE  190 (204)
Q Consensus       158 s~~ea~~~~~~~l~~~~~~d~-~~~~~~~v~~i~  190 (204)
                      |++||+++++++|+.++++|. .++.++||++|+
T Consensus       178 s~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~  211 (211)
T cd03749         178 SLEELIKHALRALRETLPGEQELTIKNVSIAIVG  211 (211)
T ss_pred             CHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence            999999999999999999887 889999999984

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6

Probab=100.00  E-value=1.2e-43  Score=282.91  Aligned_cols=182  Identities=18%  Similarity=0.162  Sum_probs=167.3

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      +.|+|+|||+++||||||+|+|.+.+ ++..+..+|||+|++|+++++||+.+|++.+.+++|.+++.|+++++++++++
T Consensus        27 ~~g~t~igi~~~d~Vvlaad~r~~~~-~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~  105 (215)
T cd03754          27 NAGLTSVAVRGKDCAVVVTQKKVPDK-LIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEMPVD  105 (215)
T ss_pred             cCCccEEEEEeCCEEEEEEecccccc-ccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence            45889999999999999999999765 44455789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH--HHhccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCC--C-
Q psy1779          84 TFAAIASWE--LYARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPG--L-  157 (204)
Q Consensus        84 ~la~~l~~~--l~~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~--m-  157 (204)
                      .+|++++++  +|+++. .|||++++|+||+|+ +++|+||++||+|++. +++++|+|+|++.++++||+.|+++  | 
T Consensus       106 ~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~-~~gp~Ly~~Dp~Gs~~-~~~~~a~G~gs~~~~~~Le~~~~~~~~~~  183 (215)
T cd03754         106 VLAKRIADINQVYTQHAYMRPLGVSMILIGIDE-ELGPQLYKCDPAGYFA-GYKATAAGVKEQEATNFLEKKLKKKPDLI  183 (215)
T ss_pred             HHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeC-CCCeEEEEEcCCccEE-eEEEEEECCCcHHHHHHHHHHhccccccC
Confidence            999999997  566654 389999999999997 6799999999999999 6999999999999999999999984  7 


Q ss_pred             -CHHHHHHHHHHHHHHHHhhccccCCCEEEEEE
Q psy1779         158 -SPEQLFEVCSQVVIQACERDTKSGWGATVYVV  189 (204)
Q Consensus       158 -s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i  189 (204)
                       |++||++++++||..+.+||. ++.+++|++|
T Consensus       184 ~s~eeai~l~~~al~~~~~rd~-~~~~~ei~~~  215 (215)
T cd03754         184 ESYEETVELAISCLQTVLSTDF-KATEIEVGVV  215 (215)
T ss_pred             CCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEC
Confidence             999999999999999999995 5899999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3

Probab=100.00  E-value=8.4e-44  Score=283.02  Aligned_cols=183  Identities=14%  Similarity=0.185  Sum_probs=168.4

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|+|.+. .+...++.+|||+|++|++++++|..+|++.+.++++.+++.|+.++++++++
T Consensus        27 ~~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~v  105 (212)
T cd03751          27 VENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIPV  105 (212)
T ss_pred             HhcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            46899999999999999999999975 55556788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc--c-cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779          83 DTFAAIASWELYAR--K-LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP  159 (204)
Q Consensus        83 ~~la~~l~~~l~~~--r-~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~  159 (204)
                      +.++++|+++++..  + ..|||+|++|+||||+  ++|+||++||+|++. +++++|+|+|++.++++||+.|+++||+
T Consensus       106 ~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~--~gp~Ly~~D~~Gs~~-~~~~~a~G~g~~~a~~~Lek~~~~dms~  182 (212)
T cd03751         106 KVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDS--DGPQLYMIEPSGVSY-GYFGCAIGKGKQAAKTELEKLKFSELTC  182 (212)
T ss_pred             HHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeC--CcCEEEEECCCCCEE-eeEEEEECCCCHHHHHHHHHhccCCCCH
Confidence            99999999987553  2 2389999999999995  689999999999999 6999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCEEEEEE
Q psy1779         160 EQLFEVCSQVVIQACERDTKSGWGATVYVV  189 (204)
Q Consensus       160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i  189 (204)
                      +||++++.++|..+.+.+-....++||.++
T Consensus       183 eeai~l~~~~L~~~~~~~~~~~~~iei~~~  212 (212)
T cd03751         183 REAVKEAAKIIYIVHDEIKDKAFELELSWV  212 (212)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence            999999999999999866577789998874

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>KOG0179|consensus

Probab=100.00  E-value=9.4e-44  Score=270.53  Aligned_cols=199  Identities=23%  Similarity=0.352  Sum_probs=191.1

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|++||++.|+.|+|+|+|.+.|..+.+++..|||+++|+++++.+|+.+|+..|...++.+.+.|+.++++.|+.
T Consensus        26 ~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~  105 (235)
T KOG0179|consen   26 EDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSI  105 (235)
T ss_pred             ccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccC---------
Q psy1779          83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFW---------  153 (204)
Q Consensus        83 ~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~---------  153 (204)
                      +.+|++||.+||.+|+ .||++..++||+|+ ++++.+|++||-|++. +..+.|.|+++..++++|+...         
T Consensus       106 ~s~A~lls~~LY~kRF-FPYYv~~ilaGiDe-eGKG~VySyDPvGsye-r~~~~AgGsa~~mI~PfLDnQi~~kn~~~e~  182 (235)
T KOG0179|consen  106 HSAAQLLSTILYSKRF-FPYYVFNILAGIDE-EGKGAVYSYDPVGSYE-RVTCRAGGSAASMIQPFLDNQIGHKNQNLEN  182 (235)
T ss_pred             HHHHHHHHHHHhhccc-ccceeeeeeecccc-cCceeEEeecCCccee-eeeeecCCcchhhhhhhhhhhccCcCccccc
Confidence            9999999999999999 99999999999998 8999999999999999 6899999999999999999753         


Q ss_pred             --CCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEeccCCC
Q psy1779         154 --QPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD  204 (204)
Q Consensus       154 --~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~~~~  204 (204)
                        ++.+|+|+|+.++..+|..|.+||+.+|++++|+|++|+|++.+++|+|.|
T Consensus       183 ~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~gV~~e~~~LrkD  235 (235)
T KOG0179|consen  183 AERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDGVEVETLPLRKD  235 (235)
T ss_pred             CcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCCEEEEeeeccCC
Confidence              246899999999999999999999999999999999999999999999987

>cd01911 proteasome_alpha proteasome alpha subunit

Probab=100.00  E-value=1.3e-43  Score=281.63  Aligned_cols=183  Identities=17%  Similarity=0.219  Sum_probs=170.9

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+||++++|||+||+|++.+.+ +...++.+|||+|+++++++++|..+|++.+.+.++.+++.|+.++++++++
T Consensus        24 ~~~G~tvigi~~~dgVvlaaD~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~  102 (209)
T cd01911          24 VKNGSTAVGIKGKDGVVLAVEKKVTSK-LLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIPV  102 (209)
T ss_pred             HHcCCCEEEEEECCEEEEEEEecCCcc-ccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            468999999999999999999999865 5556889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH--hccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779          83 DTFAAIASWELY--ARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP  159 (204)
Q Consensus        83 ~~la~~l~~~l~--~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~  159 (204)
                      +.++++++++++  .++. .|||++++||||+|+ +++|+||.+||.|++. +++++++|+++..++++||+.|+++||+
T Consensus       103 ~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~-~~~~~Ly~iD~~G~~~-~~~~~a~G~g~~~~~~~L~~~~~~~ms~  180 (209)
T cd01911         103 EVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDE-EGGPQLYQTDPSGTYF-GYKATAIGKGSQEAKTFLEKRYKKDLTL  180 (209)
T ss_pred             HHHHHHHHHHHHHHhcccCccChhheEEEEEEcC-CCCcEEEEECCCCCee-eeeEEEeCCCcHHHHHHHHHhcccCCCH
Confidence            999999999884  4443 289999999999997 6799999999999999 6999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCEEEEEE
Q psy1779         160 EQLFEVCSQVVIQACERDTKSGWGATVYVV  189 (204)
Q Consensus       160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i  189 (204)
                      +||++++.+||..+.+||. ++.+++|+++
T Consensus       181 ~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~  209 (209)
T cd01911         181 EEAIKLALKALKEVLEEDK-KAKNIEIAVV  209 (209)
T ss_pred             HHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence            9999999999999999998 9999999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.

>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal

Probab=100.00  E-value=3.6e-43  Score=279.44  Aligned_cols=183  Identities=17%  Similarity=0.182  Sum_probs=170.3

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|++.+ +.+...++.+||++|++|+++++||..+|++.+.+.++.+++.|+.++++++++
T Consensus        25 v~~G~t~igik~~dgvvla~d~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~  103 (211)
T cd03756          25 VKRGTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPIDV  103 (211)
T ss_pred             HHcCCCEEEEEECCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            3679999999999999999999997 556667889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779          83 DTFAAIASWELYAR--KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP  159 (204)
Q Consensus        83 ~~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~  159 (204)
                      +.++++++.+++..  +. .|||++++|+||||+  .+|+||++||+|++. +++++|+|++++.++++||+.|+++|++
T Consensus       104 ~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~--~~~~ly~vd~~G~~~-~~~~~a~G~g~~~~~~~Le~~~~~~m~~  180 (211)
T cd03756         104 EVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDD--GGPRLFETDPSGAYN-EYKATAIGSGRQAVTEFLEKEYKEDMSL  180 (211)
T ss_pred             HHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeC--CCCEEEEECCCCCee-eeEEEEECCCCHHHHHHHHhhccCCCCH
Confidence            99999999987543  22 289999999999996  689999999999999 6999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCEEEEEEc
Q psy1779         160 EQLFEVCSQVVIQACERDTKSGWGATVYVVE  190 (204)
Q Consensus       160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~  190 (204)
                      +||++++.+||..+.+++. ++.+++|++|+
T Consensus       181 ~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~  210 (211)
T cd03756         181 EEAIELALKALYAALEENE-TPENVEIAYVT  210 (211)
T ss_pred             HHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence            9999999999999998875 89999999986

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01906 proteasome_protease_HslV proteasome_protease_HslV

Probab=100.00  E-value=9.7e-43  Score=270.57  Aligned_cols=181  Identities=24%  Similarity=0.346  Sum_probs=172.7

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      +|+|||+++||||||+|+|.+.+.....++.+|||+|+++++++++|..+|++.+.+.++.++..|+.+++++++++.++
T Consensus         1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~   80 (182)
T cd01906           1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA   80 (182)
T ss_pred             CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            68999999999999999999998877788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHH
Q psy1779          87 AIASWELYARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEV  165 (204)
Q Consensus        87 ~~l~~~l~~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~  165 (204)
                      +++++++|.++. .|||++++|+||+|+ +++|+||.+||+|++. +++++|+|+++++++++||+.|+++||++||+++
T Consensus        81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~-~~~~~Ly~id~~G~~~-~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l  158 (182)
T cd01906          81 KLLANLLYEYTQSLRPLGVSLLVAGVDE-EGGPQLYSVDPSGSYI-EYKATAIGSGSQYALGILEKLYKPDMTLEEAIEL  158 (182)
T ss_pred             HHHHHHHHHhCCCccChheEEEEEEEeC-CCCcEEEEECCCCCEe-eccEEEECCCcHHHHHHHHHHccCCCCHHHHHHH
Confidence            999999988753 489999999999996 6899999999999999 6999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccCCCEEEEEE
Q psy1779         166 CSQVVIQACERDTKSGWGATVYVV  189 (204)
Q Consensus       166 ~~~~l~~~~~~d~~~~~~~~v~~i  189 (204)
                      +.+||+.+.++|..++++++|.+|
T Consensus       159 ~~~~l~~~~~~~~~~~~~~~i~ii  182 (182)
T cd01906         159 ALKALKSALERDLYSGGNIEVAVI  182 (182)
T ss_pred             HHHHHHHHHcccCCCCCCEEEEEC
Confidence            999999999999989999999875

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo

>KOG0176|consensus

Probab=100.00  E-value=1.1e-43  Score=267.96  Aligned_cols=186  Identities=18%  Similarity=0.192  Sum_probs=172.8

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      -+.|+|.|||+.++|||||+++|+++ .+..+.++.||++|++||+|++||+.+|++.++++.|.++++|.+.|++++++
T Consensus        31 ikLGsTaIGv~TkEgVvL~vEKritS-pLm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~V  109 (241)
T KOG0176|consen   31 IKLGSTAIGVKTKEGVVLAVEKRITS-PLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPISV  109 (241)
T ss_pred             HhcCCceeeeeccceEEEEEeccccC-cccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCcccH
Confidence            36799999999999999999999986 56678899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc-------cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCC
Q psy1779          83 DTFAAIASWELYAR-------KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ  154 (204)
Q Consensus        83 ~~la~~l~~~l~~~-------r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~  154 (204)
                      +.+.+.++++.-..       +. .|||||++|+||+|.  .+|+||+.||+|+++ .+++-|||+|++.+.+.|++.|.
T Consensus       110 Es~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~--~gpqL~h~dPSGtf~-~~~AKAIGSgsEga~~~L~~e~~  186 (241)
T KOG0176|consen  110 ESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDE--TGPQLYHLDPSGTFI-RYKAKAIGSGSEGAESSLQEEYH  186 (241)
T ss_pred             HHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccC--CCceEEEeCCCCceE-EecceeccccchHHHHHHHHHHh
Confidence            99999999985321       22 299999999999995  899999999999999 69999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCc
Q psy1779         155 PGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK  193 (204)
Q Consensus       155 ~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g  193 (204)
                      ++|+++||+.+++..|+.+++.. .+.+|+++.+|+++|
T Consensus       187 ~~ltL~ea~~~~L~iLkqVMeeK-l~~~Nvev~~vt~e~  224 (241)
T KOG0176|consen  187 KDLTLKEAEKIVLKILKQVMEEK-LNSNNVEVAVVTPEG  224 (241)
T ss_pred             hcccHHHHHHHHHHHHHHHHHHh-cCccceEEEEEcccC
Confidence            99999999999999999999976 567899999999974

>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5

Probab=100.00  E-value=3.1e-42  Score=274.47  Aligned_cols=182  Identities=15%  Similarity=0.155  Sum_probs=168.3

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|+|.+. .+...++.+||++|++|++++++|..+|++.+.+.++.+++.|+.++++++++
T Consensus        24 ~~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~  102 (213)
T cd03753          24 IKLGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMTV  102 (213)
T ss_pred             HhcCCCEEEEEeCCEEEEEEecccCC-cCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            46899999999999999999999985 45666788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc--cc------CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCC
Q psy1779          83 DTFAAIASWELYAR--KL------TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ  154 (204)
Q Consensus        83 ~~la~~l~~~l~~~--r~------~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~  154 (204)
                      +.++++++.++|..  +.      .|||+|++|+||||+  ++|+||.+||+|++. +++++|+|++++.++++||+.|+
T Consensus       103 ~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~--~gp~Ly~vd~~G~~~-~~~~~a~G~~~~~~~~~L~~~~~  179 (213)
T cd03753         103 ESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE--NGPQLFHTDPSGTFT-RCDAKAIGSGSEGAQSSLQEKYH  179 (213)
T ss_pred             HHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC--CCCEEEEECCCCCee-cccEEEECCCcHHHHHHHHhhcc
Confidence            99999999998653  11      289999999999995  789999999999999 69999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEE
Q psy1779         155 PGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVV  189 (204)
Q Consensus       155 ~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i  189 (204)
                      ++||++||++++++||+.+.+++ .++.+++|++|
T Consensus       180 ~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~  213 (213)
T cd03753         180 KDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV  213 (213)
T ss_pred             CCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence            99999999999999999988766 77889999975

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>KOG0177|consensus

Probab=100.00  E-value=6.8e-42  Score=256.76  Aligned_cols=192  Identities=18%  Similarity=0.301  Sum_probs=184.4

Q ss_pred             CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779           6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF   85 (204)
Q Consensus         6 g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   85 (204)
                      |.+++||++.|+|++|+|+....+.++..++.+|++.+++|+.++++|..+|+.++.+++.+.++.|++++|.++||..+
T Consensus         1 Me~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~a   80 (200)
T KOG0177|consen    1 METLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAA   80 (200)
T ss_pred             CceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc-ccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHH
Q psy1779          86 AAIASWELYAR-KLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFE  164 (204)
Q Consensus        86 a~~l~~~l~~~-r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~  164 (204)
                      |++.++.+.+. |+++||.|++|+||+|+ +.+|.||++|..|+.. +.+|++.|.++.++.++|++.|+|+||.+||+.
T Consensus        81 ahFtR~~La~~LRsr~~yqV~~LvaGYd~-~~gp~L~~iDyla~~~-~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~  158 (200)
T KOG0177|consen   81 AHFTRRELAESLRSRTPYQVNILVAGYDP-EEGPELYYIDYLATLV-SVPYAAHGYGSYFCLSILDRYYKPDMTIEEALD  158 (200)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEEeccCC-CCCCceeeehhhhhcc-cCCcccccchhhhhHHHHHhhhCCCCCHHHHHH
Confidence            99999999887 76689999999999999 7779999999999999 799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEe
Q psy1779         165 VCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKI  199 (204)
Q Consensus       165 ~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~  199 (204)
                      +..+|+.++.+|-..+-.+|.|.+|+|||++....
T Consensus       159 lmkKCv~El~kRlvin~~~f~v~IVdkdGir~~~~  193 (200)
T KOG0177|consen  159 LMKKCVLELKKRLVINLPGFIVKIVDKDGIRKLDD  193 (200)
T ss_pred             HHHHHHHHHHHhcccCCCCcEEEEEcCCCceeccc
Confidence            99999999999999999999999999999987653

>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type

Probab=100.00  E-value=5.4e-41  Score=268.99  Aligned_cols=181  Identities=12%  Similarity=0.080  Sum_probs=162.5

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcC-CCCCH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQ-SPISP   82 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~~   82 (204)
                      ++|+|+|||+++||||||+|++.        ++.+|||+|++|++|+++|+.+|++.+++.++.+++.|++.++ .++++
T Consensus        25 ~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v   96 (228)
T TIGR03691        25 ARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDVTG   96 (228)
T ss_pred             HcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccH
Confidence            57999999999999999999962        3579999999999999999999999999999999999999997 68999


Q ss_pred             HHHHHHHHHHHHhc-cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecc-eEEEccchhhHHHhhhccCCCCCCH
Q psy1779          83 DTFAAIASWELYAR-KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTD-FVAGGSAQNMIMGIGESFWQPGLSP  159 (204)
Q Consensus        83 ~~la~~l~~~l~~~-r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~-~~a~G~g~~~~~~~Le~~~~~~ms~  159 (204)
                      +.+++.+++.++.. +. .|||+|++|+||||+++.+|+||++||+|++. +++ ++|+|++++.++++||+.|+++||.
T Consensus        97 ~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~-~~~~~~aiG~gs~~a~~~Lek~y~~~ms~  175 (228)
T TIGR03691        97 RGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIV-DERGFVVMGGTTEPIATALKESYRDGLSL  175 (228)
T ss_pred             HHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCce-eccceEEECCChHHHHHHHHHhcCCCCCH
Confidence            99999888776432 11 28999999999998434789999999999999 565 8999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH--hhccccCCCEEEEEEcCCc
Q psy1779         160 EQLFEVCSQVVIQAC--ERDTKSGWGATVYVVEPDK  193 (204)
Q Consensus       160 ~ea~~~~~~~l~~~~--~~d~~~~~~~~v~~i~~~g  193 (204)
                      +||++++.+||..+.  +|+..++.+++|.++++++
T Consensus       176 eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~  211 (228)
T TIGR03691       176 ADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSR  211 (228)
T ss_pred             HHHHHHHHHHHHHHhccccccCCccceEEEEEeCCC
Confidence            999999999999995  4667889999999999765

Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.

>KOG0174|consensus

Probab=100.00  E-value=2.2e-40  Score=249.46  Aligned_cols=195  Identities=22%  Similarity=0.320  Sum_probs=187.3

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      ...|||++|++|++||||++|+|.+.|.++.++-.+|+.+|.|+|+|+-||..+|.|.+.+.++.++..|...+++++++
T Consensus        16 vstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v   95 (224)
T KOG0174|consen   16 VSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLV   95 (224)
T ss_pred             cccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchH
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHH
Q psy1779          83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQL  162 (204)
Q Consensus        83 ~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea  162 (204)
                      ...|+.+++++|+.|.  -+.+.+||||||+ ..+.++|.+-.-|... +.++++-|+|+.+++++++..|+++||+||+
T Consensus        96 ~~aA~l~r~~~Y~~re--~L~AgliVAGwD~-~~gGqVY~iplGG~l~-rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~  171 (224)
T KOG0174|consen   96 HTAASLFREICYNYRE--MLSAGLIVAGWDE-KEGGQVYSIPLGGSLT-RQPFAIGGSGSTFIYGFCDANWRPNMTLEEC  171 (224)
T ss_pred             HHHHHHHHHHHHhCHH--hhhcceEEeeccc-ccCceEEEeecCceEe-ecceeeccCCceeeeeeehhhcCCCCCHHHH
Confidence            9999999999999874  5889999999998 8889999999889988 6899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEecc
Q psy1779         163 FEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIAT  201 (204)
Q Consensus       163 ~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~  201 (204)
                      +++..+|+..|++||-.+|+-+.+.+|+++|++++.+++
T Consensus       172 ~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~  210 (224)
T KOG0174|consen  172 VRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPG  210 (224)
T ss_pred             HHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecC
Confidence            999999999999999999999999999999999998876

>KOG0175|consensus

Probab=100.00  E-value=1e-38  Score=249.71  Aligned_cols=193  Identities=21%  Similarity=0.233  Sum_probs=185.2

Q ss_pred             CCCCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCC
Q psy1779           1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPI   80 (204)
Q Consensus         1 ~~~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~   80 (204)
                      |+-.+|||.+|++|+.||++|+|+|.+.|.++-+..++||.+||+++.-+++|-.+|++.+.+.+-.++++|++++++.|
T Consensus        66 i~~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeri  145 (285)
T KOG0175|consen   66 IKFAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERI  145 (285)
T ss_pred             eeecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcce
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHH
Q psy1779          81 SPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPE  160 (204)
Q Consensus        81 ~~~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~  160 (204)
                      ++.+.+++|++++|++|. --+.+...+||||+  .+|.||++|..|... +.+-+++|+|+.++++.|++.|++|||.|
T Consensus       146 SVsaASKllsN~~y~YkG-mGLsmGtMi~G~Dk--~GP~lyYVDseG~Rl-~G~~FSVGSGs~yAYGVLDsgYr~dls~e  221 (285)
T KOG0175|consen  146 SVSAASKLLSNMVYQYKG-MGLSMGTMIAGWDK--KGPGLYYVDSEGTRL-SGDLFSVGSGSTYAYGVLDSGYRYDLSDE  221 (285)
T ss_pred             ehHHHHHHHHHHHhhccC-cchhheeeEeeccC--CCCceEEEcCCCCEe-cCceEeecCCCceeEEeeccCCCCCCCHH
Confidence            999999999999999987 56789999999996  899999999999999 68999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEE
Q psy1779         161 QLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR  197 (204)
Q Consensus       161 ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~  197 (204)
                      ||..+++.|+..|-.||+.||+-+.+++|+++|....
T Consensus       222 EA~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v  258 (285)
T KOG0175|consen  222 EAYDLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKV  258 (285)
T ss_pred             HHHHHHHHHHHHHHhcccccCceEEEEEECCccceec
Confidence            9999999999999999999999999999999998754

>KOG0178|consensus

Probab=100.00  E-value=3.1e-38  Score=240.67  Aligned_cols=191  Identities=9%  Similarity=0.073  Sum_probs=177.4

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      .+.+|+||+.++||||||++++.++..+-.+.+.+||++|+|||+|+.+|+++|+..|++.+|..+|.|.++++++++.+
T Consensus        29 s~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~e  108 (249)
T KOG0178|consen   29 SHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIPCE  108 (249)
T ss_pred             hhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence            46789999999999999999999988777788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH--Hhc-ccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCC-CH
Q psy1779          84 TFAAIASWEL--YAR-KLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL-SP  159 (204)
Q Consensus        84 ~la~~l~~~l--~~~-r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~m-s~  159 (204)
                      .|++.++++.  |++ ...|||||++|.+|||. ..|.+||+.||+|++. .|++.|+|.++..++++|+..|+++. ++
T Consensus       109 qLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~-~~gyqLy~SdPSGny~-gWka~ciG~N~~Aa~s~Lkqdykdd~~~~  186 (249)
T KOG0178|consen  109 QLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDD-RYGYQLYQSDPSGNYG-GWKATCIGANSGAAQSMLKQDYKDDENDL  186 (249)
T ss_pred             HHHHHHHHHHHHHhhccCcCCCceeeeeeceec-CcceEEEecCCCCCcc-ccceeeeccchHHHHHHHHhhhccccccH
Confidence            9999999986  444 33499999999999997 7789999999999999 79999999999999999999998765 59


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779         160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTI  196 (204)
Q Consensus       160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~  196 (204)
                      +||..++++.|..+++.+.++...+|+++++++.-+.
T Consensus       187 ~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~  223 (249)
T KOG0178|consen  187 EEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKT  223 (249)
T ss_pred             HHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCce
Confidence            9999999999999999999999999999999976543

>KOG0173|consensus

Probab=100.00  E-value=3.6e-38  Score=246.07  Aligned_cols=190  Identities=20%  Similarity=0.260  Sum_probs=181.1

Q ss_pred             CCCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCC
Q psy1779           2 SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPIS   81 (204)
Q Consensus         2 ~~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   81 (204)
                      .+..|||++|+.+|||||+++|+|.+.|..+..++..|||.|.++|+|+.+|..+|..++.+.+..+...|++..++.+.
T Consensus        33 ~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~r  112 (271)
T KOG0173|consen   33 ATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKPR  112 (271)
T ss_pred             ccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCCc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHH
Q psy1779          82 PDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ  161 (204)
Q Consensus        82 ~~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~e  161 (204)
                      +-..-+++.+.|+.++  .-.++.+|++|+|+  .||+||.+-|.|+.- .-+|.++|+|+..++++||..|++||+.||
T Consensus       113 Vv~A~~mlkQ~LFrYq--G~IgA~LiiGGvD~--TGpHLy~i~phGStd-~~Pf~alGSGslaAmsvlEsr~k~dlt~ee  187 (271)
T KOG0173|consen  113 VVTALRMLKQHLFRYQ--GHIGAALILGGVDP--TGPHLYSIHPHGSTD-KLPFTALGSGSLAAMSVLESRWKPDLTKEE  187 (271)
T ss_pred             eeeHHHHHHHHHHHhc--CcccceeEEccccC--CCCceEEEcCCCCcC-ccceeeeccchHHHHHHHHHhcCcccCHHH
Confidence            9999999999997665  36899999999997  899999999999999 699999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779         162 LFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTI  196 (204)
Q Consensus       162 a~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~  196 (204)
                      |.+++.+|+...+..|-.||.|+++|+|++.++.+
T Consensus       188 a~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~~~~  222 (271)
T KOG0173|consen  188 AIKLVCEAIAAGIFNDLGSGSNVDLCVITKKGVEY  222 (271)
T ss_pred             HHHHHHHHHHhhhccccCCCCceeEEEEeCCCccc
Confidence            99999999999999999999999999999988776

>KOG0185|consensus

Probab=100.00  E-value=5.9e-38  Score=242.58  Aligned_cols=193  Identities=20%  Similarity=0.286  Sum_probs=181.7

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhH-HhcCCCCCH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYV-ASEQSPISP   82 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~-~~~~~~~~~   82 (204)
                      -+||++||++|+|||+||+|+..++|++....+++||++++||+.+|++|..+|+|.+.+.+.......+ +..++.+.|
T Consensus        39 vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~P  118 (256)
T KOG0185|consen   39 VTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGP  118 (256)
T ss_pred             eccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccccccCh
Confidence            3699999999999999999999999999999999999999999999999999999999999998876644 566799999


Q ss_pred             HHHHHHHHHHHHhcccC-CCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCC---CCCC
Q psy1779          83 DTFAAIASWELYARKLT-SPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ---PGLS  158 (204)
Q Consensus        83 ~~la~~l~~~l~~~r~~-~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~---~~ms  158 (204)
                      +.++++|.++||.+|++ .|++..++|||+|. ++.|+|-.+|..|..+ +.+..|+|.|...++++|++.|.   ++++
T Consensus       119 k~ih~yltrvlY~rRsKmnPlwntlvVgGv~~-~g~~~lg~V~~~G~~Y-~~~~vATGfg~hLa~P~lR~~~~~k~~~~s  196 (256)
T KOG0185|consen  119 KAIHSYLTRVLYARRSKMNPLWNTLVVGGVDN-TGEPFLGYVDLLGVAY-ESPVVATGFGAHLALPLLRDEWEKKGEDLS  196 (256)
T ss_pred             HHHHHHHHHHHHHhhhccCchhhheeEeeecC-CCCeeEEEEeeccccc-cCchhhhhhHHHhhhHHHHHhhhccchhhH
Confidence            99999999999999875 89999999999997 8999999999999999 69999999999999999999987   5799


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEE
Q psy1779         159 PEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRK  198 (204)
Q Consensus       159 ~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~  198 (204)
                      .+||..++.+||+...+||+.+.++++|++|+++|+++..
T Consensus       197 ~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eGv~i~~  236 (256)
T KOG0185|consen  197 REEAEALIEKCMRVLYYRDARASNEFQVATVDEEGVTISK  236 (256)
T ss_pred             HHHHHHHHHHHHHHHhccccccccceEEEEEcccceEecC
Confidence            9999999999999999999999999999999999998753

>KOG0183|consensus

Probab=100.00  E-value=1.8e-37  Score=237.07  Aligned_cols=185  Identities=17%  Similarity=0.277  Sum_probs=169.7

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      ..+|+|+||++++|+|||+.+++... .+...+...||..+++|++++++|+.+|++.|++++|.+++.|+++.+.|+++
T Consensus        27 vrkGstaVgvrg~~~vvlgvEkkSv~-~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvtv  105 (249)
T KOG0183|consen   27 VRKGSTAVGVRGNNCVVLGVEKKSVP-KLQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVTV  105 (249)
T ss_pred             HhcCceEEEeccCceEEEEEeecchh-hhhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcHH
Confidence            46899999999999999999998764 56667779999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH--Hhcc-cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCC--C
Q psy1779          83 DTFAAIASWEL--YARK-LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPG--L  157 (204)
Q Consensus        83 ~~la~~l~~~l--~~~r-~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~--m  157 (204)
                      +.++++++.+.  |++- ..||||++.|++|||+ ++.|+||++||+|.++ +|++.|+|.+++.+..+||++|.++  .
T Consensus       106 eyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~-~g~p~lyqtePsG~f~-ewka~aiGr~sk~VrEflEK~y~e~~~~  183 (249)
T KOG0183|consen  106 EYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDP-DGTPRLYQTEPSGIFS-EWKANAIGRSSKTVREFLEKNYKEEAIA  183 (249)
T ss_pred             HHHHHHHHHhhhhhhccCCcccccceEEEEeeCC-CCCeeeEeeCCCcchh-hhhccccccccHHHHHHHHHhccccccc
Confidence            99999999986  4442 2399999999999999 7799999999999999 7999999999999999999999876  7


Q ss_pred             CHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCc
Q psy1779         158 SPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK  193 (204)
Q Consensus       158 s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g  193 (204)
                      +..+++++++++|....+.   .+++++++++++.+
T Consensus       184 ~~~~~ikL~ir~LleVvqs---~~~nie~aVm~~~~  216 (249)
T KOG0183|consen  184 TEGETIKLAIRALLEVVQS---GGKNIEVAVMKRRK  216 (249)
T ss_pred             ccccHHHHHHHHHHHHhhc---CCCeeEEEEEecCC
Confidence            8899999999999999874   47899999999877

>KOG0181|consensus

Probab=100.00  E-value=4.9e-37  Score=231.55  Aligned_cols=190  Identities=15%  Similarity=0.150  Sum_probs=175.0

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      ...|.+.||++-.||||||++++..+ .+....+..|+++|.+||+|.+||..+|.+.+++..|..++.|...++++|++
T Consensus        29 v~~G~~SvGi~A~nGvVlatekk~~s-~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~pt  107 (233)
T KOG0181|consen   29 VVNGQTSVGIKAANGVVLATEKKDVS-PLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIPT  107 (233)
T ss_pred             HhCCCCceeeeecCceEEEeccCCCC-ccchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCCH
Confidence            35789999999999999999998764 57778889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779          83 DTFAAIASWELYAR--KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP  159 (204)
Q Consensus        83 ~~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~  159 (204)
                      ..+...++.++++.  .. .||||+++++||||.  ++|.||++||+|++. .|+++|+|.+...++.+||++|+++|.+
T Consensus       108 ~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~--~~p~LyQvdPSGsyf-~wkatA~Gkn~v~aktFlEkR~~edlel  184 (233)
T KOG0181|consen  108 TQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDE--GGPLLYQVDPSGSYF-AWKATAMGKNYVNAKTFLEKRYNEDLEL  184 (233)
T ss_pred             HHHHHHHHHHHHHHhhcCCccccceEEEEeecCC--CceeEEEECCcccee-ehhhhhhccCcchHHHHHHHHhcccccc
Confidence            99999999998664  22 399999999999996  899999999999999 7999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEE
Q psy1779         160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR  197 (204)
Q Consensus       160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~  197 (204)
                      |++++.++..|++..+.. .+.++++|.++..++.+..
T Consensus       185 dd~ihtailtlkE~fege-~~~~nieigv~~~~~F~~l  221 (233)
T KOG0181|consen  185 DDAIHTAILTLKESFEGE-MTAKNIEIGVCGENGFRRL  221 (233)
T ss_pred             chHHHHHHHHHHHHhccc-cccCceEEEEecCCceeec
Confidence            999999999999999876 6678999999997776643

>PRK05456 ATP-dependent protease subunit HslV; Provisional

Probab=100.00  E-value=3.6e-35  Score=225.28  Aligned_cols=168  Identities=15%  Similarity=0.113  Sum_probs=147.9

Q ss_pred             CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEe-eCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHH
Q psy1779           6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQM-SPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDT   84 (204)
Q Consensus         6 g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (204)
                      |+|++|++++||||||+|+|.+.|.++.+++.+||++| ++|++++.||..+|++.|.+.++.+++.|+.    ++ ++.
T Consensus         1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~----~~-~~~   75 (172)
T PRK05456          1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG----NL-LRA   75 (172)
T ss_pred             CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC----cc-HHH
Confidence            79999999999999999999999999999999999999 9999999999999999999999999999872    22 566


Q ss_pred             HHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeee-cceEEEccchhhHHHhhhccCC-CCCCHHHH
Q psy1779          85 FAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRK-TDFVAGGSAQNMIMGIGESFWQ-PGLSPEQL  162 (204)
Q Consensus        85 la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~-~~~~a~G~g~~~~~~~Le~~~~-~~ms~~ea  162 (204)
                      +++.++.++ ..+..+|+.+++|+  +|.    |+||.+||.|+..++ .++.++|+|+.+++++||+.|+ ++|   ||
T Consensus        76 ~a~l~~~l~-~~~~~~~l~~~~lv--~d~----~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA  145 (172)
T PRK05456         76 AVELAKDWR-TDRYLRRLEAMLIV--ADK----EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SA  145 (172)
T ss_pred             HHHHHHHHH-hccCCCccEEEEEE--EcC----CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CH
Confidence            676665442 22322688899998  453    699999999999743 2799999999999999999999 999   99


Q ss_pred             HHHHHHHHHHHHhhccccCCCEEEEE
Q psy1779         163 FEVCSQVVIQACERDTKSGWGATVYV  188 (204)
Q Consensus       163 ~~~~~~~l~~~~~~d~~~~~~~~v~~  188 (204)
                      ++++.+|++.+.+||..++++++|-.
T Consensus       146 ~~la~kai~~A~~Rd~~sg~~i~v~~  171 (172)
T PRK05456        146 EEIAEKALKIAADICIYTNHNITIEE  171 (172)
T ss_pred             HHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence            99999999999999999999998864

>KOG0184|consensus

Probab=100.00  E-value=1.1e-35  Score=228.35  Aligned_cols=189  Identities=12%  Similarity=0.174  Sum_probs=166.4

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++++|+|||+||||||+++++.++++ +.......|||.|++||+++.+|+.+|.+.+..++|.++..|+.+++.|++.
T Consensus        31 ven~~T~IGIk~kdGVVl~vEKli~Sk-Ly~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~  109 (254)
T KOG0184|consen   31 VENSGTCIGIKCKDGVVLAVEKLITSK-LYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPIPG  109 (254)
T ss_pred             HhcCCcEEEEecCCeEEEEEeeeeccc-ccccCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCCch
Confidence            468999999999999999999999875 4456778999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc-c--cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779          83 DTFAAIASWELYAR-K--LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP  159 (204)
Q Consensus        83 ~~la~~l~~~l~~~-r--~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~  159 (204)
                      ..++..++.+.+-+ +  .-||||++.++++||.  ++|+||.++|+|..+ .++.+|+|.|.|.+++.||++--.+|+.
T Consensus       110 ~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~--~g~~LymiepSG~~~-~Y~~aaiGKgrq~aKtElEKL~~~~mt~  186 (254)
T KOG0184|consen  110 KHLADRVADYVHAFTLYSSVRPFGASTILGSYDD--EGPQLYMIEPSGSSY-GYKGAAIGKGRQAAKTELEKLKIDEMTC  186 (254)
T ss_pred             HHHHHHHHhhhheeehhhccccccceEEEEEEeC--CCceEEEEcCCCCcc-ceeeeeccchhHHHHHHHHhcccccccH
Confidence            99999999987654 1  1299999999999995  899999999999999 7999999999999999999998889999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCEEEEEEcC--CceE
Q psy1779         160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEP--DKVT  195 (204)
Q Consensus       160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~--~g~~  195 (204)
                      +|+++.+.+.+..+.+..--..-.+|+.++..  +|.+
T Consensus       187 ~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h  224 (254)
T KOG0184|consen  187 KELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLH  224 (254)
T ss_pred             HHHHHHHHheeEeecccccCcceEEEEEEEEeecCCcc
Confidence            99999999999888764322233567777664  4544

>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome

Probab=100.00  E-value=4.8e-34  Score=217.66  Aligned_cols=165  Identities=16%  Similarity=0.106  Sum_probs=142.4

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeC-cEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSP-HLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF   85 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   85 (204)
                      +|+||++++||||||+|+|.+.|.++.+++.+||++|++ |++|+++|..+|++.|.++++.+++.|+.+.++     .+
T Consensus         1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a   75 (171)
T cd01913           1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA   75 (171)
T ss_pred             CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence            699999999999999999999999999999999999999 999999999999999999999999999987663     45


Q ss_pred             HHHHHHHHHhcccCCCce-eeEEEEEEeCCCCceEEEEEcCCCCeeeec--ceEEEccchhhHHHhhhccCCCC-CCHHH
Q psy1779          86 AAIASWELYARKLTSPLF-INPIIAGFYPDSGEVFLSTLDMAGCETRKT--DFVAGGSAQNMIMGIGESFWQPG-LSPEQ  161 (204)
Q Consensus        86 a~~l~~~l~~~r~~~P~~-v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~--~~~a~G~g~~~~~~~Le~~~~~~-ms~~e  161 (204)
                      ++.+..++ ..+. +|+. +.++++  |.    ++||.+||.|... +.  +++++|||+.+++++||..|+++ ||   
T Consensus        76 a~l~~~l~-~~~~-~~~l~a~~iv~--~~----~~ly~id~~G~~i-e~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---  143 (171)
T cd01913          76 VELAKDWR-TDRY-LRRLEAMLIVA--DK----EHTLLISGNGDVI-EPDDGIAAIGSGGNYALAAARALLDHTDLS---  143 (171)
T ss_pred             HHHHHHHH-hccC-cCceEEEEEEe--CC----CcEEEECCCCCEe-ccCCCeEEEeCCHHHHHHHHHHhhccCCCC---
Confidence            55544443 2233 4555 555544  43    3899999999999 45  59999999999999999999995 99   


Q ss_pred             HHHHHHHHHHHHHhhccccCCCEEEEE
Q psy1779         162 LFEVCSQVVIQACERDTKSGWGATVYV  188 (204)
Q Consensus       162 a~~~~~~~l~~~~~~d~~~~~~~~v~~  188 (204)
                      +.+++.+|++.|.+||+.+|++++|-.
T Consensus       144 ~~~la~~Av~~A~~rd~~tg~~i~~~~  170 (171)
T cd01913         144 AEEIARKALKIAADICIYTNHNITVEE  170 (171)
T ss_pred             HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence            569999999999999999999998764

HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.

>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit

Probab=100.00  E-value=3e-33  Score=213.28  Aligned_cols=167  Identities=16%  Similarity=0.114  Sum_probs=142.2

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEe-eCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQM-SPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF   85 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   85 (204)
                      +|+||++++||||||+|+|.+.|.++.+++.+||++| ++|++|+.+|..+|++.|.++++.+++.|+++.     .+.+
T Consensus         1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~   75 (171)
T TIGR03692         1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA   75 (171)
T ss_pred             CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence            6999999999999999999999999999999999999 599999999999999999999999999987632     4667


Q ss_pred             HHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeee-cceEEEccchhhHHHhhhccC-CCCCCHHHHH
Q psy1779          86 AAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRK-TDFVAGGSAQNMIMGIGESFW-QPGLSPEQLF  163 (204)
Q Consensus        86 a~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~-~~~~a~G~g~~~~~~~Le~~~-~~~ms~~ea~  163 (204)
                      ++.++... ..+..+.+.+.++++  |.    ++||.+||.|...++ .+++++|||+.+++++||..| +++|+   |+
T Consensus        76 a~l~~~~~-~~~~~~~l~a~~iv~--~~----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a~  145 (171)
T TIGR03692        76 VELAKDWR-TDRYLRRLEAMLIVA--DK----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---AE  145 (171)
T ss_pred             HHHHHHHh-hcccccccEEEEEEE--cC----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---HH
Confidence            77776631 122212344666654  43    389999999999942 269999999999999999999 57787   99


Q ss_pred             HHHHHHHHHHHhhccccCCCEEEEE
Q psy1779         164 EVCSQVVIQACERDTKSGWGATVYV  188 (204)
Q Consensus       164 ~~~~~~l~~~~~~d~~~~~~~~v~~  188 (204)
                      +++.+++..|.+||+.+|++++|-.
T Consensus       146 ~la~~Av~~A~~rd~~sg~~i~v~~  170 (171)
T TIGR03692       146 EIAREALKIAADICIYTNHNITIEE  170 (171)
T ss_pred             HHHHHHHHHHHhhCccCCCCEEEEe
Confidence            9999999999999999999998864

The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.

>KOG0863|consensus

Probab=100.00  E-value=7.3e-34  Score=219.37  Aligned_cols=185  Identities=15%  Similarity=0.142  Sum_probs=168.5

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .+.|++.||++.++..||++-+|..+-   +++.++|||+|++|+++.++|+++|++.|.++++.++..+++.+++++++
T Consensus        29 vkqGsatVGLks~thaVLvAl~r~~se---Lss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv  105 (264)
T KOG0863|consen   29 VKQGSATVGLKSRTHAVLVALKRAQSE---LSSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLPV  105 (264)
T ss_pred             HhcccceEeecccceEEEeeeccchhH---HHHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCcccH
Confidence            467999999999999999998887542   46788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCC--CCC
Q psy1779          83 DTFAAIASWELYAR--KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ--PGL  157 (204)
Q Consensus        83 ~~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~--~~m  157 (204)
                      .-+...+.+.++..  |. +|||||.++++|||+  .||+||.++|+|++. +++..+||+.+|.+.++||+++.  +++
T Consensus       106 ~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe--~G~hl~e~~Psg~v~-e~~g~sIGsRSQsARTyLEr~~e~f~~~  182 (264)
T KOG0863|consen  106 LRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDE--SGPHLYEFCPSGNVF-ECKGMSIGSRSQSARTYLERNLEEFEDS  182 (264)
T ss_pred             HHHHHHHHHHHhhhhhhhCCccccceEEEEeecC--CCceeEEEcCCccEE-EEeeeecccchhhHHHHHHHHHHHHhcC
Confidence            99999998887643  33 389999999999996  899999999999999 79999999999999999999875  689


Q ss_pred             CHHHHHHHHHHHHHHHHhhc-cccCCCEEEEEEcCCc
Q psy1779         158 SPEQLFEVCSQVVIQACERD-TKSGWGATVYVVEPDK  193 (204)
Q Consensus       158 s~~ea~~~~~~~l~~~~~~d-~~~~~~~~v~~i~~~g  193 (204)
                      +.||.+..++.||+.+...| .+++.+++|+|+.||.
T Consensus       183 ~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~  219 (264)
T KOG0863|consen  183 SPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDE  219 (264)
T ss_pred             CHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCC
Confidence            99999999999999999744 6889999999999974

>KOG0182|consensus

Probab=100.00  E-value=7.1e-32  Score=206.01  Aligned_cols=194  Identities=17%  Similarity=0.163  Sum_probs=177.6

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      +.|-|.||+++||++|+++.+++.. +++.++.+..+|+|+++|+|+++|..+|++..+.+++.++..+++.+|.+|+++
T Consensus        34 ~~gltsVavrgkDcavvvsqKkvpD-KLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gyemp~D  112 (246)
T KOG0182|consen   34 QAGLTSVAVRGKDCAVVVTQKKVPD-KLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYEMPCD  112 (246)
T ss_pred             cCCCceEEEcCCceEEEEecccCcc-cccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCCCCCHH
Confidence            3488999999999999999999875 566678899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH--Hhccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCC--CC
Q psy1779          84 TFAAIASWEL--YARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPG--LS  158 (204)
Q Consensus        84 ~la~~l~~~l--~~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~--ms  158 (204)
                      .||++++++-  |+++. +||+||.+++.|+|+ +.||.+|.+||.|.+. .+++.+.|.....+.++||++|+++  .|
T Consensus       113 iL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~-E~gP~vYk~DpAGyy~-g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t  190 (246)
T KOG0182|consen  113 ILAKRMADKSQVYTQNAAMRPLGVAATLIGVDE-ERGPSVYKTDPAGYYY-GFKATAAGVKQQEATSFLEKKYKKDIDLT  190 (246)
T ss_pred             HHHHHHhhHHHHHhhhhhhcccceeEEEEEecc-ccCcceEeecCccccc-cceeeecccchhhHHHHHHHhhccCccch
Confidence            9999999985  55543 499999999999998 8899999999999999 7999999999999999999999977  77


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEecc
Q psy1779         159 PEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIAT  201 (204)
Q Consensus       159 ~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~  201 (204)
                      .+|++++++.||..++.-|.. ..++||.+++++.-+++.|..
T Consensus       191 ~~e~ve~ai~al~~sl~~Dfk-~se~EVgvv~~~~p~f~~Ls~  232 (246)
T KOG0182|consen  191 FEETVETAISALQSSLGIDFK-SSELEVGVVTVDNPEFRILSA  232 (246)
T ss_pred             HHHHHHHHHHHHHHHHhcccC-CcceEEEEEEcCCcceeeccH
Confidence            999999999999999998844 569999999999888887754

>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

Probab=99.98  E-value=2.7e-30  Score=195.52  Aligned_cols=162  Identities=22%  Similarity=0.206  Sum_probs=153.4

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      +|+||++++|||++|+|++.+.+......+.+|+++++++++++++|..+|++.+.++++.+++.|+.++++++++..++
T Consensus         1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (164)
T cd01901           1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA   80 (164)
T ss_pred             CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            58999999999999999999988777678899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeec-ceEEEccchhhHHHhhhccCCCCCCHHHHHHH
Q psy1779          87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKT-DFVAGGSAQNMIMGIGESFWQPGLSPEQLFEV  165 (204)
Q Consensus        87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~-~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~  165 (204)
                      +.+++.++..+..+|+++++|+||+|+  ++|+||.+||+|.+. +. .++++|+++..+.++|++.|+++|+.+|++++
T Consensus        81 ~~~~~~~~~~~~~~p~~~~~iiag~~~--~~~~l~~id~~g~~~-~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~  157 (164)
T cd01901          81 KELAKLLQVYTQGRPFGVNLIVAGVDE--GGGNLYYIDPSGPVI-ENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVEL  157 (164)
T ss_pred             HHHHHHHHHhcCCCCcceEEEEEEEcC--CCCEEEEECCCcCEe-ecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHH
Confidence            999999987754589999999999996  789999999999999 57 99999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy1779         166 CSQVVI  171 (204)
Q Consensus       166 ~~~~l~  171 (204)
                      +.++|.
T Consensus       158 ~~~~l~  163 (164)
T cd01901         158 ALKALK  163 (164)
T ss_pred             HHHHHh
Confidence            999985

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t

>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=3.8e-17  Score=120.65  Aligned_cols=173  Identities=17%  Similarity=0.130  Sum_probs=135.7

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeC-cEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCC
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSP-HLYLINPGLCADGMQFAEKMTLRTANYVASEQSPIS   81 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   81 (204)
                      +.+|||+++++-++-|+||+|.++|.|+.++..+..|+.+|.+ ++..|++|.++|+..|.+.++.+++.|+-+--+  .
T Consensus         1 ~~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~L~r--a   78 (178)
T COG5405           1 TFHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGDLFR--A   78 (178)
T ss_pred             CceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCcHHH--H
Confidence            3579999999999999999999999999999999888888875 799999999999999999999999887522111  3


Q ss_pred             HHHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeee-cceEEEccchhhHHHhhhccCC-CCCCH
Q psy1779          82 PDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRK-TDFVAGGSAQNMIMGIGESFWQ-PGLSP  159 (204)
Q Consensus        82 ~~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~-~~~~a~G~g~~~~~~~Le~~~~-~~ms~  159 (204)
                      .-++++.++.--|-+    -+-+-+||+  |+    -.+|-+...|...++ .+..+||||..++++.....++ +++| 
T Consensus        79 avelaKdwr~Dk~lr----~LEAmllVa--d~----~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls-  147 (178)
T COG5405          79 AVELAKDWRTDKYLR----KLEAMLLVA--DK----THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS-  147 (178)
T ss_pred             HHHHHHhhhhhhHHH----HHhhheeEe--CC----CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC-
Confidence            344555554333332    345556665  43    358888888987754 4489999999999998888775 4777 


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCEEEEEEc
Q psy1779         160 EQLFEVCSQVVIQACERDTKSGWGATVYVVE  190 (204)
Q Consensus       160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~  190 (204)
                        |.+++.++|..+.+-+.+++.++.|..++
T Consensus       148 --A~eIa~~sl~iA~eiciyTN~ni~ve~l~  176 (178)
T COG5405         148 --AREIAEKSLKIAGDICIYTNHNIVVEELR  176 (178)
T ss_pred             --HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence              77789999999988888888888877664

>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=1.2e-13  Score=105.81  Aligned_cols=189  Identities=15%  Similarity=0.024  Sum_probs=149.3

Q ss_pred             CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEee---Cc-EEEEecCChHHHHHHHHHHHHHHHhhHHh-cCCCC
Q psy1779           6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMS---PH-LYLINPGLCADGMQFAEKMTLRTANYVAS-EQSPI   80 (204)
Q Consensus         6 g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~---~~-i~~~~sG~~~D~~~l~~~~~~~~~~~~~~-~~~~~   80 (204)
                      ||.|||++-..|.|+++|+|...|-.-+ +..+|+|-..   ++ +++..+|..+-.|.+.+.+.+..+.-+.+ ....+
T Consensus         1 MTYCv~l~l~~GlVf~sDsRTNAGvD~i-stfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~   79 (255)
T COG3484           1 MTYCVGLILDFGLVFGSDSRTNAGVDYI-STFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIP   79 (255)
T ss_pred             CceEEEEEeccceEEecccccccCchHH-HHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcch
Confidence            6889999999999999999987764432 3456766554   44 67788999999999999998877632221 12344


Q ss_pred             CHHHHHHHHHHHH---Hhc-c--c---CCCceeeEEEEEEeCCCCceEEEEEcCCCCeee---ecceEEEccchhhHHHh
Q psy1779          81 SPDTFAAIASWEL---YAR-K--L---TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETR---KTDFVAGGSAQNMIMGI  148 (204)
Q Consensus        81 ~~~~la~~l~~~l---~~~-r--~---~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~---~~~~~a~G~g~~~~~~~  148 (204)
                      ++.+.+..+....   +.+ +  +   .--|.|++|++|.-. .+.|.||.+.|.|++.+   +.+|.-+|.. ++-+++
T Consensus        80 sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~-G~pp~Ly~IYpqGNFIqaT~etpf~QiGEt-KYGKPi  157 (255)
T COG3484          80 SMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIK-GEPPRLYLIYPQGNFIQATPETPFLQIGET-KYGKPI  157 (255)
T ss_pred             hHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceec-CCCceeEEEccCCCeeecCCCCceeEcccc-ccCchh
Confidence            5666666666543   222 1  1   146889999999986 56689999999999985   5788899987 478999


Q ss_pred             hhccCCCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEE
Q psy1779         149 GESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR  197 (204)
Q Consensus       149 Le~~~~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~  197 (204)
                      |++.+..+++++|+.++++-+|...+..+.+.|-++++.++.+|.....
T Consensus       158 ldR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds~~v~  206 (255)
T COG3484         158 LDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADSFSVR  206 (255)
T ss_pred             hhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccceeee
Confidence            9999999999999999999999999999999999999999999975543

>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.56  E-value=0.0087  Score=46.34  Aligned_cols=155  Identities=12%  Similarity=0.141  Sum_probs=96.0

Q ss_pred             CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779           6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF   85 (204)
Q Consensus         6 g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   85 (204)
                      |+.+||..+++|.|+|+|+|.                      +++-|.-.....|-+.      +|   .|+--+-++|
T Consensus         1 MSLII~y~GknGaViaGDkR~----------------------I~F~G~~~~re~LEee------LY---sG~IktdeEL   49 (194)
T PF09894_consen    1 MSLIIAYYGKNGAVIAGDKRN----------------------IAFRGDEEKREKLEEE------LY---SGKIKTDEEL   49 (194)
T ss_pred             CeEEEEEecCCCcEEecccee----------------------eeecCCHHHHHHHHHH------Hh---CCccCCHHHH
Confidence            678999999999999999973                      2556666666655443      22   3444455677


Q ss_pred             HHHHHHH---HH--hcccC-CCceeeEEEEEEeCC----CCceEEEEE-------cCCCCeee------ecceEEEccc-
Q psy1779          86 AAIASWE---LY--ARKLT-SPLFINPIIAGFYPD----SGEVFLSTL-------DMAGCETR------KTDFVAGGSA-  141 (204)
Q Consensus        86 a~~l~~~---l~--~~r~~-~P~~v~~lvaG~d~~----~~~p~Ly~i-------d~~G~~~~------~~~~~a~G~g-  141 (204)
                      .+....+   ++  ..|.. +-.+ .+|+|-+-..    ...-++|-.       |-.|.-..      ....+..|.. 
T Consensus        50 ~kkA~Elgv~i~I~D~r~KV~~~~-~vlvGEV~s~~g~~skRRRiY~t~g~~~Ivei~~~~i~~~~~g~~sgiIVfGNk~  128 (194)
T PF09894_consen   50 LKKAEELGVKIKITDDREKVRKIG-DVLVGEVTSISGKDSKRRRIYATKGKYAIVEIENDEITNKSRGEGSGIIVFGNKF  128 (194)
T ss_pred             HHHHHHcCCEEEEecCchheEEeC-CEEEEEEEEEcCccceeeEEEecCCCEEEEEecCCeEEEEecCCceeEEEECCHH
Confidence            7666654   11  11111 1222 1344433220    133456643       22233220      0112222322 


Q ss_pred             -hhhHHHhhhccCCCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCC
Q psy1779         142 -QNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPD  192 (204)
Q Consensus       142 -~~~~~~~Le~~~~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~  192 (204)
                       .+.+...|.+.|++.|+++++..+...+|+.+...-+..+..+++...++.
T Consensus       129 ~K~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~  180 (194)
T PF09894_consen  129 TKEIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK  180 (194)
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence             356777888999999999999999999999998877777889999988764

They do show distant similarity to NTPases and to nucleic acid binding enzymes.

>COG4079 Uncharacterized protein conserved in archaea [Function unknown]

Probab=96.63  E-value=0.21  Score=40.21  Aligned_cols=156  Identities=11%  Similarity=0.029  Sum_probs=95.8

Q ss_pred             CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779           6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF   85 (204)
Q Consensus         6 g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   85 (204)
                      |+-+|+..++||.|+|.|+|.                      +.+-|.-.|.+.|-+.         +-.|.--+-++|
T Consensus         1 MtLviay~gknGaviaGDrR~----------------------i~frgdee~re~lEek---------LYsGeIkteEEL   49 (293)
T COG4079           1 MTLVIAYIGKNGAVIAGDRRE----------------------ITFRGDEEDREKLEEK---------LYSGEIKTEEEL   49 (293)
T ss_pred             CeEEEEEecCCCcEEeccceE----------------------EEEecChhHHHHHHHH---------hhcCccccHHHH
Confidence            578999999999999999873                      2345666666655443         224555566788


Q ss_pred             HHHHHHHH-----HhcccC-CCceeeEEEEEEeCCC----CceEEEEEc-------CCCCeee----e--cceEEEccc-
Q psy1779          86 AAIASWEL-----YARKLT-SPLFINPIIAGFYPDS----GEVFLSTLD-------MAGCETR----K--TDFVAGGSA-  141 (204)
Q Consensus        86 a~~l~~~l-----~~~r~~-~P~~v~~lvaG~d~~~----~~p~Ly~id-------~~G~~~~----~--~~~~a~G~g-  141 (204)
                      ++.+..+=     ...|.. +-..-+++++-+....    ..-++|.+-       ..|+-.-    .  ....+.|.. 
T Consensus        50 ~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~  129 (293)
T COG4079          50 ARKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKF  129 (293)
T ss_pred             HHHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHH
Confidence            88777641     111211 2333344555444310    123344332       2222110    0  112222322 


Q ss_pred             -hhhHHHhhhccCCCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCC
Q psy1779         142 -QNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPD  192 (204)
Q Consensus       142 -~~~~~~~Le~~~~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~  192 (204)
                       -+.+..+|.+.|.+.++++++..+...+|..+...-++.+..+++..++++
T Consensus       130 ~Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~  181 (293)
T COG4079         130 TKEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN  181 (293)
T ss_pred             HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence             235567788899999999999999999999998776777889999988864

>PRK09732 hypothetical protein; Provisional

Probab=85.79  E-value=3.7  Score=30.26  Aligned_cols=40  Identities=13%  Similarity=0.117  Sum_probs=34.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEE
Q psy1779         155 PGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRK  198 (204)
Q Consensus       155 ~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~  198 (204)
                      +.||++.|.+++..++..+.+.    +.++.|+|++..|...-.
T Consensus         5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~l~a~   44 (134)
T PRK09732          5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGGHLLAL   44 (134)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCCCEEEE
Confidence            5699999999999999988875    579999999999976443

>KOG3361|consensus

Probab=84.28  E-value=1.2  Score=32.62  Aligned_cols=44  Identities=14%  Similarity=0.256  Sum_probs=38.8

Q ss_pred             EEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHH
Q psy1779         121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEV  165 (204)
Q Consensus       121 y~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~  165 (204)
                      ..+|-+|.+. ..+|-..|.|+.-+-+.+-..|-..+|+||+..+
T Consensus        71 Ikvd~~g~I~-dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI  114 (157)
T KOG3361|consen   71 IKVDDSGVIE-DAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI  114 (157)
T ss_pred             EEECCCCcEE-EeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence            4578899999 6999999999999999999999999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	204
1ryp_J	204	Crystal Structure Of The 20s Proteasome From Yeast		2e-35
1g0u_I	205	A Gated Channel Into The Proteasome Core Particle L		2e-35
3unb_I	205	Mouse Constitutive 20s Proteasome In Complex With P		5e-35
1iru_J	205	Crystal Structure Of The Mammalian 20s Proteasome A		2e-34
1iru_M	213	Crystal Structure Of The Mammalian 20s Proteasome A		4e-08
3unb_L	213	Mouse Constitutive 20s Proteasome In Complex With P		3e-07
3unb_N	205	Mouse Constitutive 20s Proteasome In Complex With P		3e-06
1ryp_K	198	Crystal Structure Of The 20s Proteasome From Yeast		3e-06
1iru_H	205	Crystal Structure Of The Mammalian 20s Proteasome A		1e-05
1ryp_M	222	Crystal Structure Of The 20s Proteasome From Yeast		6e-05
1g0u_L	241	A Gated Channel Into The Proteasome Core Particle L		7e-05
3unf_N	199	Mouse 20s Immunoproteasome In Complex With Pr-957 L		1e-04

>pdb|1RYP|J Chain J, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 204

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/200 (36%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5   DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
           +GG +VAM GK+C AI  D  L      ++    K+     H++L   GL  D     E 
Sbjct: 7   NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEM 65
Query: 65  MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
              +T  Y   E+  I P+TF  + S  LY R+   P F+ P++AG    SG+ F++  D
Sbjct: 66  FRYKTNLYKLKEERAIEPETFTQLVSSSLYERRF-GPYFVGPVVAGINSKSGKPFIAGFD 124
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
           + GC     DF+  G+A + + G+ ES ++P L PE LFE  SQ ++ A +RD  SGWGA
Sbjct: 125 LIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGA 184
Query: 185 TVYVVEPDKVTIRKIATRMD 204
            VY+++ D+V  R +  R D
Sbjct: 185 VVYIIKKDEVVKRYLKMRQD 204

>pdb|1G0U|I Chain I, A Gated Channel Into The Proteasome Core Particle Length = 205

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/200 (36%), Positives = 107/200 (53%), Gaps = 2/200 (1%)
Query: 5   DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEK 64
           +GG +VAM GK+C AI  D  L      ++    K+     H++L   GL  D     E 
Sbjct: 8   NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEM 66
Query: 65  MTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
              +T  Y   E+  I P+TF  + S  LY R+   P F+ P++AG    SG+ F++  D
Sbjct: 67  FRYKTNLYKLKEERAIEPETFTQLVSSSLYERRF-GPYFVGPVVAGINSKSGKPFIAGFD 125
Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
           + GC     DF+  G+A + + G+ ES ++P L PE LFE  SQ ++ A +RD  SGWGA
Sbjct: 126 LIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGA 185
Query: 185 TVYVVEPDKVTIRKIATRMD 204
            VY+++ D+V  R +  R D
Sbjct: 186 VVYIIKKDEVVKRYLKMRQD 205

>pdb|3UNB|I Chain I, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 205

Iteration: 1
 Score =  143 bits (361), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 75/205 (36%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1   MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
           MS N GGA++AM GKNC AI  D    +Q      +++ K+  M   LY+   GL  D  
Sbjct: 4   MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60  QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
             A+++  R   Y   E   I P T  ++ +  LY ++   P +  P+IAG  P + + F
Sbjct: 62  TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
           + +LD+ GC     DFV  G+    + G+ ES W+P + PE LFE  SQ ++ A +RD  
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
           SG G  V+V+E DK+T R +  RMD
Sbjct: 181 SGMGVIVHVIEKDKITTRTLKARMD 205

>pdb|1IRU|J Chain J, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 205

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1   MSLNDGGAIVAMAGKNCFAIGVDHLL-VQGDFTIAEYENKVHQMSPHLYLINPGLCADGM 59
           MS N GGA++AM GKNC AI  D    +Q      +++ K+  M   LY+   GL  D  
Sbjct: 4   MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQ-KIFPMGDRLYIGLAGLATDVQ 61
Query: 60  QFAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVF 119
             A+++  R   Y   E   I P T  ++ +  LY ++   P +  P+IAG  P + + F
Sbjct: 62  TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPF 120
Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
           + +LD+ GC     DFV  G+    + G+ ES W+P + P+ LFE  SQ ++ A +RD  
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAV 180
Query: 180 SGWGATVYVVEPDKVTIRKIATRMD 204
           SG G  V+++E DK+T R +  RMD
Sbjct: 181 SGMGVIVHIIEKDKITTRTLKARMD 205

>pdb|1IRU|M Chain M, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 213

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 18/212 (8%)
Query: 5   DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
           +GG I+A+AG++   +  D  L +G F+I   ++ K ++++    +   G   D +   +
Sbjct: 8   NGGTILAIAGEDFAIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 66
Query: 64  KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
            +  R   Y  S    ++    AA+ S  LY+R+   P ++  II G   + G+  + + 
Sbjct: 67  IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 124
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPG-----------LSPEQLFEVCSQVVIQ 172
           D  G   R + F AGGSA  M+  + ++  Q G           LS ++   +   V I 
Sbjct: 125 DPVGSYQRDS-FKAGGSASAMLQPLLDN--QVGFKNMQNVEHVPLSLDRAMRLVKDVFIS 181
Query: 173 ACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
           A ERD  +G    + +V  + +    ++ R D
Sbjct: 182 AAERDVYTGDALRICIVTKEGIREETVSLRKD 213

>pdb|3UNB|L Chain L, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 213

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 14/210 (6%)
Query: 5   DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYEN-KVHQMSPHLYLINPGLCADGMQFAE 63
           +GG ++A+AG++   +  D  L +G F+I   ++ K ++++    +   G   D +   +
Sbjct: 8   NGGTVLAIAGEDFSIVASDTRLSEG-FSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 66
Query: 64  KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
            +  R   Y  S    ++    AA+ S  LY+R+   P ++  II G   + G+  + + 
Sbjct: 67  IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGGL-DEEGKGAVYSF 124
Query: 124 DMAGCETRKTDFVAGGSAQNMIMGI---------GESFWQPGLSPEQLFEVCSQVVIQAC 174
           D  G   R + F AGGSA  M+  +          ++     L+ ++   +   V I A 
Sbjct: 125 DPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAA 183
Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
           ERD  +G    + +V  + +    +  R D
Sbjct: 184 ERDVYTGDALRICIVTKEGIREETVPLRKD 213

>pdb|3UNB|N Chain N, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 205

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 6/174 (3%)
Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
           I+A+       +G D     G +      +K+  +  H++    G  AD    A+ +T +
Sbjct: 3   IMAVQFNGGVVLGADSRTTTGSYIANRVTDKLTPIHDHIFCCRSGSAADTQAVADAVTYQ 62
Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLSTLDMAG 127
              +      P  P    A + ++    +    L    IIAG+ P + G+V+  ++ M G
Sbjct: 63  LGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY--SVPMGG 118
Query: 128 CETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
              R++ F  GGS  + I G  ++ ++ G++ ++  +  +  +  A ERD  SG
Sbjct: 119 MMVRQS-FAIGGSGSSYIYGYVDATYREGMTKDECLQFTANALALAMERDGSSG 171

>pdb|1RYP|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 198

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 84/191 (43%), Gaps = 10/191 (5%)
Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
           I+ +  ++   +     + +G   + + ++K  Q+SPH  +   G   D +QFAE +   
Sbjct: 4   ILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQAN 63
Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVFLSTLDMA 126
              Y   E   +SP   ++    EL A+ + S  P  +N +I G+     +  L  +D  
Sbjct: 64  IQLYSIREDYELSPQAVSSFVRQEL-AKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYL 122
Query: 127 GCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ---LFEVCSQVVIQACERDTKSGWG 183
           G +  +  + A G +      + +  ++P ++ E+   L ++C Q + +    D K   G
Sbjct: 123 GTKV-ELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFK---G 178
Query: 184 ATVYVVEPDKV 194
             V +V+ D +
Sbjct: 179 VIVKIVDKDGI 189

>pdb|1IRU|H Chain H, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 205

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 6/174 (3%)
Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
           I+A+       +G D     G +      +K+  +   ++    G  AD    A+ +T +
Sbjct: 3   IMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQ 62
Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYP-DSGEVFLSTLDMAG 127
              +      P  P    A + ++    +    L    IIAG+ P + G+V+  ++ M G
Sbjct: 63  LGFHSIELNEP--PLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVY--SVPMGG 118
Query: 128 CETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
              R++ F  GGS  + I G  ++ ++ G++ E+  +  +  +  A ERD  SG
Sbjct: 119 MMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSG 171

>pdb|1RYP|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 222

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 23/210 (10%)
Query: 4   NDGGAIVAMAGKNCFAIGVDHLLVQGDFTI-AEYENKVHQMSPHLYLINPGLCADGMQFA 62
           ++GG I+ +AG++   +  D   +  D++I + YE KV     ++ +   G  ADG    
Sbjct: 7   DNGGTILGIAGEDFAVLAGDTRNIT-DYSINSRYEPKVFDCGDNIVMSANGFAADGDALV 65
Query: 63  EKMTLRTANY-VASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
           ++       Y        +S ++ A      LY ++   P +++ IIAG   D G+  + 
Sbjct: 66  KRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFF-PYYVHTIIAGLDED-GKGAVY 123
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGE------SFWQPG-----------LSPEQLFE 164
           + D  G   R+    AGG+A ++IM   +      + ++PG           LS E++ +
Sbjct: 124 SFDPVGSYEREQ-CRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIK 182
Query: 165 VCSQVVIQACERDTKSGWGATVYVVEPDKV 194
           +       A ER  + G G  + +V  D V
Sbjct: 183 LVRDSFTSATERHIQVGDGLEILIVTKDGV 212

>pdb|1G0U|L Chain L, A Gated Channel Into The Proteasome Core Particle Length = 241

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 92/210 (43%), Gaps = 23/210 (10%)
Query: 4   NDGGAIVAMAGKNCFAIGVDHLLVQGDFTI-AEYENKVHQMSPHLYLINPGLCADGMQFA 62
           ++GG I+ +AG++ FA+         D++I + YE KV     ++ +   G  ADG    
Sbjct: 26  DNGGTILGIAGED-FAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALV 84
Query: 63  EKMTLRTANY-VASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
           ++       Y        +S ++ A      LY ++   P +++ IIAG   D G+  + 
Sbjct: 85  KRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFF-PYYVHTIIAGLDED-GKGAVY 142
Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGE------SFWQPG-----------LSPEQLFE 164
           + D  G   R+    AGG+A ++IM   +      + ++PG           LS E++ +
Sbjct: 143 SFDPVGSYEREQ-CRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIK 201
Query: 165 VCSQVVIQACERDTKSGWGATVYVVEPDKV 194
           +       A ER  + G G  + +V  D V
Sbjct: 202 LVRDSFTSATERHIQVGDGLEILIVTKDGV 231

>pdb|3UNF|N Chain N, Mouse 20s Immunoproteasome In Complex With Pr-957 Length = 199

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 9/182 (4%)
Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
           I+A+       +G D  +  G   +    +K+  +   ++    G  AD    A+    +
Sbjct: 3   IMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQ 62
Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGF-YPDSGEVFLSTLDMAG 127
              +    + P  P   AA    +  + K    L  + I+AG+   + G+V+ +   M G
Sbjct: 63  LELHGLELEEP--PLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGT---MGG 117
Query: 128 CETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVY 187
              R+  F  GGS  + I G  ++ ++PG++PE+     +  +  A  RD  S  G  +Y
Sbjct: 118 MLIRQP-FTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSS--GGVIY 174
Query: 188 VV 189
           +V
Sbjct: 175 LV 176

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	204
1iru_J	205	20S proteasome; cell cycle, immune response, prote	1e-56
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	1e-54
1iru_M	213	20S proteasome; cell cycle, immune response, prote	8e-49
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	7e-45
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	2e-42
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	1e-41
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	5e-40
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	2e-39
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	8e-37
1iru_K	201	20S proteasome; cell cycle, immune response, prote	2e-36
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	2e-35
1iru_H	205	20S proteasome; cell cycle, immune response, prote	3e-33
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	4e-33
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	2e-32
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	4e-31
1iru_L	204	20S proteasome; cell cycle, immune response, prote	2e-26
1iru_N	219	20S proteasome; cell cycle, immune response, prote	2e-22
1iru_I	234	20S proteasome; cell cycle, immune response, prote	2e-22
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	4e-21
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	1e-20
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	4e-20
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	5e-20
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	8e-19
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	7e-18
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	6e-16
3mi0_A	248	Proteasome subunit alpha; enzyme inhibitors, lacto	2e-08
1q5q_A	259	Proteasome alpha-type subunit 1; proteasome assemb	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Length = 205

 Score =  176 bits (450), Expect = 1e-56
 Identities = 69/199 (34%), Positives = 103/199 (51%), Gaps = 1/199 (0%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
           GGA++AM GKNC AI  D         +     K+  M   LY+   GL  D    A+++
Sbjct: 8   GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 67

Query: 66  TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
             R   Y   E   I P T  ++ +  LY ++   P +  P+IAG  P + + F+ +LD+
Sbjct: 68  KFRLNLYELKEGRQIKPYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPFICSLDL 126

Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
            GC     DFV  G+    + G+ ES W+P + P+ LFE  SQ ++ A +RD  SG G  
Sbjct: 127 IGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVI 186

Query: 186 VYVVEPDKVTIRKIATRMD 204
           V+++E DK+T R +  RMD
Sbjct: 187 VHIIEKDKITTRTLKARMD 205

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Length = 204

 Score =  172 bits (437), Expect = 1e-54
 Identities = 72/199 (36%), Positives = 106/199 (53%), Gaps = 2/199 (1%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
           GG +VAM GK+C AI  D  L      ++    K+     H++L   GL  D     E  
Sbjct: 8   GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMF 66

Query: 66  TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
             +T  Y   E+  I P+TF  + S  LY R+   P F+ P++AG    SG+ F++  D+
Sbjct: 67  RYKTNLYKLKEERAIEPETFTQLVSSSLYERRF-GPYFVGPVVAGINSKSGKPFIAGFDL 125

Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
            GC     DF+  G+A + + G+ ES ++P L PE LFE  SQ ++ A +RD  SGWGA 
Sbjct: 126 IGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWGAV 185

Query: 186 VYVVEPDKVTIRKIATRMD 204
           VY+++ D+V  R +  R D
Sbjct: 186 VYIIKKDEVVKRYLKMRQD 204

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213

 Score =  157 bits (399), Expect = 8e-49
 Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 12/208 (5%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
           GG I+A+AG++   +  D  L +G         K ++++    +   G   D +   + +
Sbjct: 9   GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 68

Query: 66  TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
             R   Y  S    ++    AA+ S  LY+R+   P ++  II G   + G+  + + D 
Sbjct: 69  EARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFF-PYYVYNIIGG-LDEEGKGAVYSFDP 126

Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESF---------WQPGLSPEQLFEVCSQVVIQACER 176
            G   R   F AGGSA  M+  + ++              LS ++   +   V I A ER
Sbjct: 127 VGSYQRD-SFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAER 185

Query: 177 DTKSGWGATVYVVEPDKVTIRKIATRMD 204
           D  +G    + +V  + +    ++ R D
Sbjct: 186 DVYTGDALRICIVTKEGIREETVSLRKD 213

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Length = 222

 Score =  147 bits (373), Expect = 7e-45
 Identities = 46/219 (21%), Positives = 86/219 (39%), Gaps = 21/219 (9%)

Query: 4   NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
           ++GG I+ +AG++   +  D   +      + YE KV     ++ +   G  ADG    +
Sbjct: 7   DNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVK 66

Query: 64  KMTLRTANY-VASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLST 122
           +       Y        +S ++ A      LY ++   P +++ IIAG   + G+  + +
Sbjct: 67  RFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFF-PYYVHTIIAG-LDEDGKGAVYS 124

Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESF-----------------WQPGLSPEQLFEV 165
            D  G   R+    AGG+A ++IM   ++                      LS E++ ++
Sbjct: 125 FDPVGSYERE-QCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKL 183

Query: 166 CSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
                  A ER  + G G  + +V  D V       + D
Sbjct: 184 VRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 222

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Length = 199

 Score =  140 bits (355), Expect = 2e-42
 Identities = 37/194 (19%), Positives = 69/194 (35%), Gaps = 5/194 (2%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
           I+A+       +G D  +  G   +    +K+  +   ++    G  AD    A+    +
Sbjct: 3   IMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQ 62

Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
              +    + P      A +     Y  +    L  + I+AG+    G          G 
Sbjct: 63  LELHGLELEEPPLVLAAANVVKNISYKYR--EDLLAHLIVAGWDQREGGQVY---GTMGG 117

Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
              +  F  GGS  + I G  ++ ++PG++PE+     +  +  A  RD  SG    +  
Sbjct: 118 MLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVT 177

Query: 189 VEPDKVTIRKIATR 202
           +    V  R I   
Sbjct: 178 ITAAGVDHRVILGD 191

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Length = 202

 Score =  138 bits (351), Expect = 1e-41
 Identities = 35/187 (18%), Positives = 75/187 (40%), Gaps = 3/187 (1%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
            V +  K+   +  +     G+F  ++   K++Q++  + +   G   D    A  + + 
Sbjct: 3   TVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIE 62

Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
              Y    +   +    A + S  L + +   P  +  +I G   +   ++  ++D  G 
Sbjct: 63  ANLYEIRRERKPTVRAIATLTSNLLNSYRYF-PYLVQLLIGGIDSEGKSIY--SIDPIGG 119

Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
              + D VA GS      G+ E  + P +  ++  E+  + +  A +RD+ SG G  V  
Sbjct: 120 AIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVK 179

Query: 189 VEPDKVT 195
           +  D+  
Sbjct: 180 ITEDEFY 186

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198

 Score =  134 bits (340), Expect = 5e-40
 Identities = 36/189 (19%), Positives = 77/189 (40%), Gaps = 2/189 (1%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
           I+ +  ++   +     + +G   + + ++K  Q+SPH  +   G   D +QFAE +   
Sbjct: 4   ILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQAN 63

Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLT-SPLFINPIIAGFYPDSGEVFLSTLDMAG 127
              Y   E   +SP   ++    EL     +  P  +N +I G+     +  L  +D  G
Sbjct: 64  IQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLG 123

Query: 128 CETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVY 187
               +  + A G +      + +  ++P ++ E+  ++    V +  +R      G  V 
Sbjct: 124 T-KVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVK 182

Query: 188 VVEPDKVTI 196
           +V+ D +  
Sbjct: 183 IVDKDGIRQ 191

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 264

 Score =  133 bits (336), Expect = 2e-39
 Identities = 10/188 (5%), Positives = 36/188 (19%), Gaps = 2/188 (1%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
           +  +                  + +      V + +  + +         +       L 
Sbjct: 4   MQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLV 63

Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
               +            A           +     +   I         + +  L    C
Sbjct: 64  KIRSIEKIFQIDDHVAAATSGLVADARVLI-DRARLEAQIYRLTYGEE-ISIEMLAKKIC 121

Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
           + ++     GG     +  +     +      +     + +  +A    +       +  
Sbjct: 122 DIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLE 181

Query: 189 VEPDKVTI 196
            E      
Sbjct: 182 KEYRDDIT 189

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266

 Score =  128 bits (323), Expect = 8e-37
 Identities = 31/201 (15%), Positives = 71/201 (35%), Gaps = 13/201 (6%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
           G ++++M   N   I  D+L   G         ++  +  +  +   G  +D       +
Sbjct: 41  GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLL 100

Query: 66  TLRTANY-----VASEQSPISPDTFAAIASWELYARKLT-SPLFINPIIAGFYPDSGEVF 119
                       +A  +  + P       +  +Y R+   +PL+   I+AG   + G+ F
Sbjct: 101 KDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSN-GDQF 159

Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFW-----QPGLSPEQLFEVCSQVVIQAC 174
           L  +++ G  T  +  +A G   +M   +           P  + +   E     +    
Sbjct: 160 LRYVNLLGV-TYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLY 218

Query: 175 ERDTKSGWGATVYVVEPDKVT 195
            RD +S    ++ +++ +   
Sbjct: 219 YRDARSSRNFSLAIIDKNTGL 239

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201

 Score =  125 bits (316), Expect = 2e-36
 Identities = 35/189 (18%), Positives = 77/189 (40%), Gaps = 3/189 (1%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
           ++ + G +   +  D +       + +  +K+ +MS  + L+  G   D +QFAE +   
Sbjct: 4   LIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKN 63

Query: 69  TANYVASEQSPISPDTFAAIASWELY-ARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAG 127
              Y       +SP   A      L    +  +P  +N ++AG+    G   L  +D   
Sbjct: 64  VQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGP-ALYYMDYLA 122

Query: 128 CETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVY 187
               K  F A G    + + I + ++ P +S E+  E+  + + +  +R   +    +V 
Sbjct: 123 A-LAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVR 181

Query: 188 VVEPDKVTI 196
           +++ + +  
Sbjct: 182 IIDKNGIHD 190

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233

 Score =  123 bits (311), Expect = 2e-35
 Identities = 31/201 (15%), Positives = 71/201 (35%), Gaps = 13/201 (6%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
           G ++++M   N   I  D+L   G         ++  +  +  +   G  +D       +
Sbjct: 8   GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLL 67

Query: 66  TLRTANY-----VASEQSPISPDTFAAIASWELYARKLT-SPLFINPIIAGFYPDSGEVF 119
                       +A  +  + P       +  +Y R+   +PL+   I+AG   + G+ F
Sbjct: 68  KDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSN-GDQF 126

Query: 120 LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFW-----QPGLSPEQLFEVCSQVVIQAC 174
           L  +++ G  T  +  +A G   +M   +           P  + +   E     +    
Sbjct: 127 LRYVNLLGV-TYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLY 185

Query: 175 ERDTKSGWGATVYVVEPDKVT 195
            RD +S    ++ +++ +   
Sbjct: 186 YRDARSSRNFSLAIIDKNTGL 206

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Length = 205

 Score =  117 bits (295), Expect = 3e-33
 Identities = 40/191 (20%), Positives = 76/191 (39%), Gaps = 4/191 (2%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
           I+A+       +G D     G +      +K+  +   ++    G  AD    A+ +T +
Sbjct: 3   IMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQ 62

Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
              +      P    T A++     Y  +    L    IIAG+ P  G   + ++ M G 
Sbjct: 63  LGFHSIELNEPPLVHTAASLFKEMCYRYR--EDLMAGIIIAGWDPQEG-GQVYSVPMGGM 119

Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
             R+  F  GGS  + I G  ++ ++ G++ E+  +  +  +  A ERD  SG    +  
Sbjct: 120 MVRQ-SFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAA 178

Query: 189 VEPDKVTIRKI 199
           +    V  + +
Sbjct: 179 IAESGVERQVL 189

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Length = 212

 Score =  116 bits (294), Expect = 4e-33
 Identities = 41/188 (21%), Positives = 74/188 (39%), Gaps = 3/188 (1%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
            +A   +    + VD     G++  ++   +V +++P L     G  AD   +   +  +
Sbjct: 3   TLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQ 62

Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
              +   E+  IS    + I S  +Y  K  + L +  +I G+    G   +  +D  G 
Sbjct: 63  CRLHELREKERISVAAASKILSNLVYQYK-GAGLSMGTMICGYTRKEG-PTIYYVDSDGT 120

Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
              K D    GS Q    G+ +S ++  LS E    +  + ++ A  RD  SG    +Y 
Sbjct: 121 -RLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYH 179

Query: 189 VEPDKVTI 196
           V  D    
Sbjct: 180 VTEDGWIY 187

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* Length = 287

 Score =  117 bits (295), Expect = 2e-32
 Identities = 43/191 (22%), Positives = 75/191 (39%), Gaps = 3/191 (1%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
           G   +A   +    + VD     G++  ++   KV +++P L     G  AD   +   +
Sbjct: 75  GTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWL 134

Query: 66  TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
             +   +   E+  IS    + I S  +Y  K  + L +  +I G+    G   +  +D 
Sbjct: 135 GSQCRLHELREKERISVAAASKILSNLVYQYK-GAGLSMGTMICGYTRKEG-PTIYYVDS 192

Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
            G    K D    GS Q    G+ +S ++  LS E    +  + ++ A  RD  SG    
Sbjct: 193 DGTRL-KGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVN 251

Query: 186 VYVVEPDKVTI 196
           +Y V  D    
Sbjct: 252 LYHVTEDGWIY 262

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Length = 205

 Score =  111 bits (281), Expect = 4e-31
 Identities = 40/194 (20%), Positives = 78/194 (40%), Gaps = 7/194 (3%)

Query: 3   LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
           ++ G +I+A+  K+   +G D     G +      +K+ ++   ++    G  AD    A
Sbjct: 6   VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIA 65

Query: 63  EKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSG-EVFLS 121
           + +      Y +   +P +  T A++     Y  K    L    I+AG+   +  EV+  
Sbjct: 66  DIVQYHLELYTSQYGTPSTE-TAASVFKELCYENK--DNLTAGIIVAGYDDKNKGEVY-- 120

Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
           T+ + G    K  +   GS    I G  +  ++  +S E+  +     + QA + D  SG
Sbjct: 121 TIPLGGS-VHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSG 179

Query: 182 WGATVYVVEPDKVT 195
               + V+    V 
Sbjct: 180 GVIRMVVLTAAGVE 193

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Length = 204

 Score = 99.6 bits (249), Expect = 2e-26
 Identities = 35/187 (18%), Positives = 70/187 (37%), Gaps = 4/187 (2%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
            +A   ++   +  D     G +  ++   KV +++P+L     G  AD   +   +  +
Sbjct: 3   TLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQ 62

Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
              Y    +  IS    + + +  +Y  K    L +  +I G+      ++   +D  G 
Sbjct: 63  CRIYELRNKERISVAAASKLLANMVYQYK-GMGLSMGTMICGWDKRGPGLY--YVDSEGN 119

Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
                   + GS      G+ +  +   L  EQ +++  + + QA  RD  SG    +Y 
Sbjct: 120 -RISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYH 178

Query: 189 VEPDKVT 195
           V  D   
Sbjct: 179 VREDGWI 185

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219

 Score = 89.2 bits (222), Expect = 2e-22
 Identities = 36/197 (18%), Positives = 72/197 (36%), Gaps = 7/197 (3%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
           G +++ +  +    I  D L   G        +++ +++    L   G  AD     + +
Sbjct: 8   GTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVL 67

Query: 66  TLRTANY-VASEQSPISPDTFAAIASWELYARKLT-SPLFINPIIAGFYPDSGEVFLSTL 123
                +  +  +    SP    +  +  +Y+R+   +PL+   +I G+    GE FL  +
Sbjct: 68  GQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGY--ADGESFLGYV 125

Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESF--WQPGLSPEQLFEVCSQVVIQACERDTKSG 181
           DM G    +   +A G    +   +       QP LS  +  ++  + +     RD +S 
Sbjct: 126 DMLGV-AYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSY 184

Query: 182 WGATVYVVEPDKVTIRK 198
                  V    V I  
Sbjct: 185 NRFQTATVTEKGVEIEG 201

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Length = 234

 Score = 89.7 bits (223), Expect = 2e-22
 Identities = 33/188 (17%), Positives = 70/188 (37%), Gaps = 5/188 (2%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
           I  +  K+   +G D    +G     +  +K+H +SP++Y    G  AD     + ++  
Sbjct: 3   IAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSN 62

Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
              +  S        T   +    L+  +    +    ++ G       ++  ++   G 
Sbjct: 63  LELHSLSTGRLPRVVTANRMLKQMLFRYR--GYIGAALVLGGVDVTGPHLY--SIYPHGS 118

Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
            T K  +V  GS     M + E  ++P +  E+   + S+ +      D  SG    + V
Sbjct: 119 -TDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCV 177

Query: 189 VEPDKVTI 196
           +  +K+  
Sbjct: 178 ISKNKLDF 185

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* Length = 261

 Score = 87.0 bits (216), Expect = 4e-21
 Identities = 39/190 (20%), Positives = 69/190 (36%), Gaps = 5/190 (2%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
           G  IV +   N   I  D    QG     +   K+H++SP ++    G  AD     + +
Sbjct: 29  GTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLI 88

Query: 66  TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
                 +           +   +    L+  +    +    I+AG  P    +F  ++  
Sbjct: 89  GSNIELHSLYTSREPRVVSALQMLKQHLFKYQ--GHIGAYLIVAGVDPTGSHLF--SIHA 144

Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
            G  T    +++ GS     M + ES W+  L+ E+  ++ S  +      D  SG    
Sbjct: 145 HGS-TDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVD 203

Query: 186 VYVVEPDKVT 195
           V V+E  K  
Sbjct: 204 VCVMEIGKDA 213

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Length = 222

 Score = 85.0 bits (211), Expect = 1e-20
 Identities = 38/187 (20%), Positives = 68/187 (36%), Gaps = 5/187 (2%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
           IV +   N   I  D    QG     +   K+H++SP ++    G  AD     + +   
Sbjct: 3   IVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSN 62

Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
              +           +   +    L+  +    +    I+AG  P    +F  ++   G 
Sbjct: 63  IELHSLYTSREPRVVSALQMLKQHLFKYQ--GHIGAYLIVAGVDPTGSHLF--SIHAHGS 118

Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
            T    +++ GS     M + ES W+  L+ E+  ++ S  +      D  SG    V V
Sbjct: 119 -TDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCV 177

Query: 189 VEPDKVT 195
           +E  K  
Sbjct: 178 MEIGKDA 184

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Length = 291

 Score = 84.6 bits (209), Expect = 4e-20
 Identities = 33/200 (16%), Positives = 64/200 (32%), Gaps = 7/200 (3%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
           G  IVA+       +  D    QG+        KV+    +      G  A  ++FA   
Sbjct: 57  GTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLY 116

Query: 66  TLRTANYVASEQSPISPDTFAAIASWELYARKLTS--PLFINPIIAGFYPDSGEVF---- 119
            +   +Y   E  P++        +  +      +   L   P++AG+   + +      
Sbjct: 117 AVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGR 176

Query: 120 -LSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDT 178
            +S     G    +  + A GS         +  +      +    V  + +  A + D+
Sbjct: 177 IVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDS 236

Query: 179 KSGWGATVYVVEPDKVTIRK 198
            +G    V  + P  V I  
Sbjct: 237 ATGGPDLVRGIFPTAVIIDA 256

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217

 Score = 83.0 bits (206), Expect = 5e-20
 Identities = 34/192 (17%), Positives = 76/192 (39%), Gaps = 5/192 (2%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
           G   V +  K+   +  +  +   +F + +   K+ Q+  +  +   GL  D       M
Sbjct: 8   GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYM 67

Query: 66  TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
                 Y    +  +  +  A + S  L   K   P  +  ++ G    +  VF  ++D 
Sbjct: 68  KAELELYRLQRRVNMPIEAVATLLSNMLNQVKYM-PYMVQLLVGG-IDTAPHVF--SIDA 123

Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
           AG  + +  + + GS    + G+ ES +   ++ ++  ++  + +  A +RD+ SG    
Sbjct: 124 AGG-SVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMID 182

Query: 186 VYVVEPDKVTIR 197
           V V+      ++
Sbjct: 183 VAVITRKDGYVQ 194

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Length = 294

 Score = 81.2 bits (200), Expect = 8e-19
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 9/201 (4%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
           G  IVA+  K    +  D    QG+   +     V+    +      G     ++     
Sbjct: 65  GTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLF 124

Query: 66  TLRTANYVASEQSPISPDTFAAIASWELYARK--LTSPLFINPIIAGFYPDS------GE 117
            +   +Y   E  P++ D  A   +  +          L + P++ G+  D+      G 
Sbjct: 125 AVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGR 184

Query: 118 VFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERD 177
           +    +     E  +  + A GS         +  + P    E       + +  A + D
Sbjct: 185 IVSYDVVGGRYEE-RAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDD 243

Query: 178 TKSGWGATVYVVEPDKVTIRK 198
           + +G       + P  VTI +
Sbjct: 244 SATGGPDLTRGIYPTAVTITQ 264

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Length = 235

 Score = 77.6 bits (191), Expect = 7e-18
 Identities = 33/198 (16%), Positives = 65/198 (32%), Gaps = 9/198 (4%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
           IVA+  K    +  D    QG+   +    KV+    +      G     ++      + 
Sbjct: 3   IVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVE 62

Query: 69  TANYVASEQSPISPDTFAAIASWELYARK--LTSPLFINPIIAGFYPDS------GEVFL 120
             +Y   E  P++ D  A   +  +          L + P++ G+  D+      G +  
Sbjct: 63  LEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVS 122

Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
             +     E  +  + A GS         +  + P    E       + +  A + D+ +
Sbjct: 123 YDVVGGRYEE-RAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSAT 181

Query: 181 GWGATVYVVEPDKVTIRK 198
           G       + P  VTI +
Sbjct: 182 GGPDLTRGIYPTAVTITQ 199

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Length = 234

 Score = 72.7 bits (179), Expect = 6e-16
 Identities = 30/190 (15%), Positives = 66/190 (34%), Gaps = 5/190 (2%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
           I  +  ++   +G D           +   K+H ++P +Y    G+ AD          +
Sbjct: 3   IAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASK 62

Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
              +  S        T   I    L+  +    +  + ++ G   +  +++   +   G 
Sbjct: 63  MELHALSTGREPRVATVTRILRQTLFRYQ--GHVGASLVVGGVDLNGPQLY--EVHPHGS 118

Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
              +  F A GS Q   + + E  +QP ++ E   E+  + +      D  SG      V
Sbjct: 119 -YSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVDACV 177

Query: 189 VEPDKVTIRK 198
           +      +++
Sbjct: 178 ITAGGAKLQR 187

>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D Length = 248

 Score = 51.9 bits (124), Expect = 2e-08
 Identities = 16/186 (8%), Positives = 44/186 (23%), Gaps = 15/186 (8%)

Query: 2   SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQF 61
            +    ++VA+A         +          +    K+ ++   +     G   +    
Sbjct: 23  GIARAKSVVALAYAGGVLFVAE--------NPSRSLQKISELYDRVGFAAAGKFNE-FDN 73

Query: 62  AEKMTLRTANYVASEQSPISPDTFA----AIASWELYARKLTSPLFINPIIAGF--YPDS 115
             +  ++ A+                      +      +   P  +   +A    Y ++
Sbjct: 74  LRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGET 133

Query: 116 GEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACE 175
               L  +   G    +  FV  G     I    +  +    S      +    +     
Sbjct: 134 KRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAGSA 193

Query: 176 RDTKSG 181
             +   
Sbjct: 194 DTSGGD 199

>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A Length = 259

 Score = 51.1 bits (122), Expect = 3e-08
 Identities = 22/201 (10%), Positives = 55/201 (27%), Gaps = 21/201 (10%)

Query: 2   SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQF 61
            +  G ++V +  ++      +          +   +KV ++   L     G   +    
Sbjct: 23  GIARGRSVVVLTFRDGVLFVAE--------NPSTALHKVSELYDRLGFAAVGKYNEFENL 74

Query: 62  AEKMTLRT-ANYVASEQSPISPDTFAAIASWELYARKLTS---PLFINPIIA--GFYPDS 115
                +       + ++  ++  + A   +  L     T    P  +   +A  G     
Sbjct: 75  RRAGIVHADMRGYSYDRRDVTGRSLANAYAQTL-GTIFTEQPKPYEVEICVAEVGRVGSP 133

Query: 116 GEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACE 175
               L  +   G    +  FV  G     I       ++  L  E    +    + Q   
Sbjct: 134 KAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGA 193

Query: 176 RDTKSGWGATVYVVEPDKVTI 196
            + +         V+   + +
Sbjct: 194 GEGEKR------NVDVASLEV 208

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 34/238 (14%), Positives = 75/238 (31%), Gaps = 69/238 (28%)

Query: 1   MSLNDGGAIV--AMAG--KNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCA 56
           + L     ++   + G  K   A+ V        + +        +M   ++ +N   C 
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDV----CL-SYKV------QCKMDFKIFWLNLKNCN 193

Query: 57  DGMQFAEKMT--LRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPD 114
                 E +   L   +   + +S  S +    I S +   R+L   L   P     Y +
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL---LKSKP-----YEN 245

Query: 115 S---------GEVFLSTLDMAGCE----TRK---TDFVAGGSAQNMIMGIGESFWQPGLS 158
                      +   +  ++  C+    TR    TDF++  +  ++ +          L+
Sbjct: 246 CLLVLLNVQNAKA-WNAFNL-SCKILLTTRFKQVTDFLSAATTTHISL----DHHSMTLT 299

Query: 159 PEQLFEVCSQVV--------IQACE-------------RDTKSGWGATVYVVEPDKVT 195
           P+++  +  + +         +                RD  + W    + V  DK+T
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-VNCDKLT 356

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	204
1iru_M	213	20S proteasome; cell cycle, immune response, prote	100.0
1iru_J	205	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	100.0
3h4p_a	219	Proteasome subunit beta; core particle, cytoplasm,	100.0
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	100.0
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	100.0
1iru_H	205	20S proteasome; cell cycle, immune response, prote	100.0
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	100.0
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_K	201	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_N	219	20S proteasome; cell cycle, immune response, prote	100.0
1iru_L	204	20S proteasome; cell cycle, immune response, prote	100.0
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	100.0
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	100.0
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	100.0
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	100.0
1ryp_A	243	20S proteasome; multicatalytic proteinase, protein	100.0
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	100.0
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_A	246	20S proteasome; cell cycle, immune response, prote	100.0
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	100.0
1ryp_C	244	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_B	233	20S proteasome; cell cycle, immune response, prote	100.0
1iru_C	261	20S proteasome; cell cycle, immune response, prote	100.0
1iru_I	234	20S proteasome; cell cycle, immune response, prote	100.0
1yar_A	233	Proteasome alpha subunit; proteasome 20S, PA26 pro	100.0
1ryp_E	242	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_E	241	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_D	241	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_G	254	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_G	244	20S proteasome; multicatalytic proteinase, protein	100.0
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	100.0
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	100.0
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	100.0
1iru_D	248	20S proteasome; cell cycle, immune response, prote	100.0
3nzj_F	288	Proteasome component C1; ubiquitin, protein degrad	100.0
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	100.0
1ryp_F	233	20S proteasome; multicatalytic proteinase, protein	100.0
1j2p_A	246	Alpha-ring, proteasome alpha subunit; hydrolase; 2	100.0
3mi0_A	248	Proteasome subunit alpha; enzyme inhibitors, lacto	100.0
1iru_F	263	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_B	250	20S proteasome; multicatalytic proteinase, protein	100.0
1q5q_A	259	Proteasome alpha-type subunit 1; proteasome assemb	100.0
2z3b_A	180	ATP-dependent protease HSLV; N-terminal nucleophIl	100.0
1g3k_A	174	ATP-dependent protease HSLV; hydrolase; 1.90A {Hae	100.0
1m4y_A	171	ATP-dependent protease HSLV; N-terminal catalytic	100.0

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L

Probab=100.00  E-value=4.4e-52  Score=329.96  Aligned_cols=199  Identities=24%  Similarity=0.361  Sum_probs=192.2

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|+++++||..+|++.|.++++.+++.|++++++++++
T Consensus         6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v   85 (213)
T 1iru_M            6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT   85 (213)
T ss_dssp             CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence            46899999999999999999999999998888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhcc---------C
Q psy1779          83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESF---------W  153 (204)
Q Consensus        83 ~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~---------~  153 (204)
                      +.+++++++++|++|. |||++++||||||+ +++|+||.+||+|++. +++++|+|+|+++++++||+.         |
T Consensus        86 ~~la~~l~~~~y~~r~-~P~~v~~lvaG~D~-~g~p~Ly~id~~G~~~-~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~  162 (213)
T 1iru_M           86 GAIAAMLSTILYSRRF-FPYYVYNIIGGLDE-EGKGAVYSFDPVGSYQ-RDSFKAGGSASAMLQPLLDNQVGFKNMQNVE  162 (213)
T ss_dssp             HHHHHHHHHHHHHTTT-SCCCEEEEEEEECT-TSCEEEEEECTTSCEE-EESEEEEETTHHHHHHHHHHHTTCCSCSSCC
T ss_pred             HHHHHHHHHHHHhhCC-CCceEEEEEEEEcC-CCCEEEEEECCCCCEE-ECCEEEEeeCHHHHHHHHhhccccccccccC
Confidence            9999999999999885 99999999999997 6779999999999998 699999999999999999999         8


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEeccCCC
Q psy1779         154 QPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD  204 (204)
Q Consensus       154 ~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~~~~  204 (204)
                      +++||++||++++.+||..+.++|..++++++|++|+++|++.+.+++|+|
T Consensus       163 ~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d  213 (213)
T 1iru_M          163 HVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD  213 (213)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEEEEECCCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCCeEEEEeecCCC
Confidence            899999999999999999999999999999999999999999999999998

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I

Probab=100.00  E-value=5.5e-52  Score=327.57  Aligned_cols=201  Identities=34%  Similarity=0.634  Sum_probs=191.7

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.|.++++.+++.|++++++++++
T Consensus         5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v   84 (205)
T 1iru_J            5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP   84 (205)
T ss_dssp             TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred             cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence            57899999999999999999999999999888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHH
Q psy1779          83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQL  162 (204)
Q Consensus        83 ~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea  162 (204)
                      +.+++++++++|++|. .||++++|+||||+.+++|+||++||+|++.+..+|+|+|+|+++++++||+.|+++||++||
T Consensus        85 ~~la~~l~~~~y~~r~-~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea  163 (205)
T 1iru_J           85 YTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHL  163 (205)
T ss_dssp             HHHHHHHHHHHHTTTT-SCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHHH
T ss_pred             HHHHHHHHHHHHHhcC-CCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHHHH
Confidence            9999999999999886 799999999999942478999999999998634577999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEeccCCC
Q psy1779         163 FEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD  204 (204)
Q Consensus       163 ~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~~~~  204 (204)
                      ++++.+||..+.++|..++++++|++|+++|++++.+++|+|
T Consensus       164 ~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d  205 (205)
T 1iru_J          164 FETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD  205 (205)
T ss_dssp             HHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEBCCCCC
T ss_pred             HHHHHHHHHHHHHhCcccCCceEEEEEcCCCEEEEEeecCCC
Confidence            999999999999999999999999999999999999999998

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...

Probab=100.00  E-value=9e-52  Score=330.15  Aligned_cols=199  Identities=23%  Similarity=0.327  Sum_probs=192.5

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcC-CCCC
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQ-SPIS   81 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~   81 (204)
                      .++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++ ++++
T Consensus         6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~   85 (222)
T 1ryp_M            6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLS   85 (222)
T ss_dssp             CCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             ccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            568999999999999999999999999988899999999999999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhcc---------
Q psy1779          82 PDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESF---------  152 (204)
Q Consensus        82 ~~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~---------  152 (204)
                      ++.+++++++++|++|. +||++++||||||+ +++|+||++||+|++. +++++|+|+|+++++++||+.         
T Consensus        86 v~~la~~l~~~ly~~r~-~P~~v~~ivaG~D~-~g~p~Ly~~dp~G~~~-~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~  162 (222)
T 1ryp_M           86 INSAARNIQHLLYGKRF-FPYYVHTIIAGLDE-DGKGAVYSFDPVGSYE-REQCRAGGAAASLIMPFLDNQVNFKNQYEP  162 (222)
T ss_dssp             HHHHHHHHHHHHHTTTT-SCCCEEEEEEEECT-TSCEEEEEECTTSCEE-EESEEEEETTHHHHHHHHHHHTSCTTCBCT
T ss_pred             HHHHHHHHHHHHHhcCC-CCceEEEEEEEEcC-CCCeEEEEECCCcCEE-ecCEEEEcCcHHHHHHHHhccccccccccc
Confidence            99999999999999886 89999999999997 6779999999999998 699999999999999999998         


Q ss_pred             --------CCCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEeccCCC
Q psy1779         153 --------WQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD  204 (204)
Q Consensus       153 --------~~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~~~~  204 (204)
                              |+++||+|||++++++||..+.+||..++++++|++|+++|++++.+++|+|
T Consensus       163 ~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~~~~r~d  222 (222)
T 1ryp_M          163 GTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD  222 (222)
T ss_dssp             TSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEECCCC
T ss_pred             ccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCCeEEEEeeccCC
Confidence                    8899999999999999999999999999999999999999999999999998

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...

Probab=100.00  E-value=2.4e-51  Score=323.70  Aligned_cols=200  Identities=36%  Similarity=0.698  Sum_probs=190.7

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+ |++++++|..+|++.|.++++.+++.|++++++++++
T Consensus         5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v   83 (204)
T 1ryp_J            5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEP   83 (204)
T ss_dssp             GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             CCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCH
Confidence            468999999999999999999999999998888999999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHH
Q psy1779          83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQL  162 (204)
Q Consensus        83 ~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea  162 (204)
                      +.+++++++++|++|. .||++++|+||||+.+++|+||.+||+|++.+..+|+|+|+|+++++++||+.|+++||++||
T Consensus        84 ~~la~~l~~~~y~~~~-~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea  162 (204)
T 1ryp_J           84 ETFTQLVSSSLYERRF-GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDL  162 (204)
T ss_dssp             HHHHHHHHHHHHTTTT-SCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHHH
T ss_pred             HHHHHHHHHHHHHhcC-CCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHHHH
Confidence            9999999999999887 699999999999952478999999999998644577999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEeccCCC
Q psy1779         163 FEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD  204 (204)
Q Consensus       163 ~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~~~~  204 (204)
                      ++++.+||..+.++|..++++++|++|+++|++++.+++|+|
T Consensus       163 ~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~~~~r~d  204 (204)
T 1ryp_J          163 FETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD  204 (204)
T ss_dssp             HHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHHhCcccCCcEEEEEEcCCCEEEEEeecCCC
Confidence            999999999999999999999999999999999999999998

>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=2.6e-49  Score=315.26  Aligned_cols=188  Identities=21%  Similarity=0.266  Sum_probs=181.0

Q ss_pred             CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779           6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF   85 (204)
Q Consensus         6 g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   85 (204)
                      |+|+|||+++||||||+|+|.+.|.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++.+
T Consensus         1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l   80 (219)
T 3h4p_a            1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC   80 (219)
T ss_dssp             -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred             CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecc-eEEEccchhhHHHhhhccCCCCCCHHHHHH
Q psy1779          86 AAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTD-FVAGGSAQNMIMGIGESFWQPGLSPEQLFE  164 (204)
Q Consensus        86 a~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~-~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~  164 (204)
                      ++++++++|++|. +||++++||||||+ +++|+||++||+|++. +++ ++|+|+|+++++++||+.|+++||++||++
T Consensus        81 a~~l~~~~~~~~~-~P~~v~~lvaG~D~-~~gp~Ly~idp~G~~~-~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~  157 (219)
T 3h4p_a           81 ATLLSNILHSSRM-FPFLTQIIIGGYDL-LEGAKLFSLDPLGGMN-EEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIK  157 (219)
T ss_dssp             HHHHHHHHHHTTT-TTCCCCCEEEEEET-TTEEEEEEECSSCCEE-ECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHhcC-CCceEEEEEEEEeC-CCCcEEEEECCCCceE-ecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence            9999999998876 89999999999997 6899999999999999 688 999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779         165 VCSQVVIQACERDTKSGWGATVYVVEPDKVTI  196 (204)
Q Consensus       165 ~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~  196 (204)
                      ++.+||..+.++|..++++++|++|+++|++.
T Consensus       158 la~~al~~~~~rd~~sg~~i~v~vi~~~g~~~  189 (219)
T 3h4p_a          158 LALNALKSAMERDTFSGNGISLAVITKDGVKI  189 (219)
T ss_dssp             HHHHHHHHHHTSCSSCCSCCCEEEEETTEEEE
T ss_pred             HHHHHHHHHHhhcCCCCCcEEEEEEeCCCeEE
Confidence            99999999999999999999999999998654

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...

Probab=100.00  E-value=8.3e-49  Score=307.79  Aligned_cols=192  Identities=19%  Similarity=0.289  Sum_probs=181.1

Q ss_pred             CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779           6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF   85 (204)
Q Consensus         6 g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   85 (204)
                      |+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++.+
T Consensus         1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l   80 (198)
T 1ryp_K            1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV   80 (198)
T ss_dssp             CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred             CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence            68999999999999999999999999888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc-ccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHH
Q psy1779          86 AAIASWELYAR-KLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFE  164 (204)
Q Consensus        86 a~~l~~~l~~~-r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~  164 (204)
                      ++++++++|.+ +.++||++++|+||||+++++|+||.+||+|++. +++++|+|+|+++++++||+.|+++||++||++
T Consensus        81 a~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~-~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~  159 (198)
T 1ryp_K           81 SSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKV-ELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLD  159 (198)
T ss_dssp             HHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEE-ECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEE-ECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHH
Confidence            99999999886 3324999999999999523789999999999998 699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCEEEEEEcCCceEEEE
Q psy1779         165 VCSQVVIQACERDTKSGWGATVYVVEPDKVTIRK  198 (204)
Q Consensus       165 ~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~  198 (204)
                      ++.+||..+.++|..++++++|++|+++|++...
T Consensus       160 l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~  193 (198)
T 1ryp_K          160 LLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQVD  193 (198)
T ss_dssp             HHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEEC
T ss_pred             HHHHHHHHHHHhCccCCCceEEEEEcCCCEEEec
Confidence            9999999999999999999999999999977543

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4

Probab=100.00  E-value=1.6e-48  Score=307.08  Aligned_cols=186  Identities=18%  Similarity=0.285  Sum_probs=179.3

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      ||+|||+++||||||+|+|.+.|.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++.++
T Consensus         1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (202)
T 1j2q_H            1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA   80 (202)
T ss_dssp             CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecc-eEEEccchhhHHHhhhccCCCCCCHHHHHHH
Q psy1779          87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTD-FVAGGSAQNMIMGIGESFWQPGLSPEQLFEV  165 (204)
Q Consensus        87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~-~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~  165 (204)
                      +++++++|++|. |||++++|+||||+  ++|+||++||+|++. +++ ++|+|+|+++++++||+.|+++||++||+++
T Consensus        81 ~~l~~~~~~~r~-rp~~~~~lvaG~D~--~gp~Ly~id~~G~~~-~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l  156 (202)
T 1j2q_H           81 TLTSNLLNSYRY-FPYLVQLLIGGIDS--EGKSIYSIDPIGGAI-EEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVEL  156 (202)
T ss_dssp             HHHHHHHHHTTT-SCCCEEEEEEEEET--TEEEEEEECTTCCEE-EESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred             HHHHHHHHhhCC-CCceEEEEEEEEeC--CCCEEEEECCCCCee-ecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHH
Confidence            999999999876 89999999999996  789999999999999 689 9999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779         166 CSQVVIQACERDTKSGWGATVYVVEPDKVTI  196 (204)
Q Consensus       166 ~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~  196 (204)
                      +.+||..+.++|..++++++|++|+++|++.
T Consensus       157 a~~al~~~~~~d~~s~~~i~v~vi~~~g~~~  187 (202)
T 1j2q_H          157 AVRAIYSAMKRDSASGDGIDVVKITEDEFYQ  187 (202)
T ss_dssp             HHHHHHHHHTTCTTSCSCEEEEEECSSCEEE
T ss_pred             HHHHHHHHHhcCCCCCCcEEEEEEeCCCeEE
Confidence            9999999999999999999999999998553

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N

Probab=100.00  E-value=2.6e-48  Score=306.50  Aligned_cols=192  Identities=20%  Similarity=0.280  Sum_probs=184.4

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      ||+|||+++||||||+|+|.+.|.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++.++
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (205)
T 1iru_H            1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA   80 (205)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            68999999999999999999999888899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779          87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC  166 (204)
Q Consensus        87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~  166 (204)
                      +++++++|.++  +||++++|+||||+ +++|+||.+||+|++. +++++++|+|+++++++||+.|+++||++||++++
T Consensus        81 ~~l~~~~~~~~--~p~~~~~lvaG~D~-~~gp~ly~~d~~G~~~-~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~  156 (205)
T 1iru_H           81 SLFKEMCYRYR--EDLMAGIIIAGWDP-QEGGQVYSVPMGGMMV-RQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFT  156 (205)
T ss_dssp             HHHHHHHHHTT--TTCCEEEEEEEEET-TTEEEEEEECTTSCCE-ECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHH
T ss_pred             HHHHHHHHhcC--cCccEEEEEEEEeC-CCCCEEEEECCCCcEE-ecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            99999999876  49999999999997 6799999999999999 69999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCEEEEEEcCCceEEEEeccC
Q psy1779         167 SQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATR  202 (204)
Q Consensus       167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~~  202 (204)
                      .+||..+.++|..++++++|++|+++|.+++.++.+
T Consensus       157 ~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~  192 (205)
T 1iru_H          157 ANALALAMERDGSSGGVIRLAAIAESGVERQVLLGD  192 (205)
T ss_dssp             HHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGG
T ss_pred             HHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChH
Confidence            999999999999999999999999999988888753

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H

Probab=100.00  E-value=1.7e-48  Score=310.19  Aligned_cols=189  Identities=18%  Similarity=0.264  Sum_probs=178.7

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|+|.+.|.++..++.+||++|++|+++++||..+|++.|.++++.+++.|++++++++++
T Consensus         5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v   84 (217)
T 1yar_H            5 LETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPI   84 (217)
T ss_dssp             ----CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             CCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHH
Q psy1779          83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQL  162 (204)
Q Consensus        83 ~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea  162 (204)
                      +.+++++++++|++|. |||++++|+||||   ++|+||.+||+|++. +++++|+|+|+++++++||+.|+++||++||
T Consensus        85 ~~la~~l~~~~~~~r~-rp~~v~~lvaG~D---~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea  159 (217)
T 1yar_H           85 EAVATLLSNMLNQVKY-MPYMVQLLVGGID---TAPHVFSIDAAGGSV-EDIYASTGSGSPFVYGVLESQYSEKMTVDEG  159 (217)
T ss_dssp             HHHHHHHHHHHHHTTT-SCCCEEEEEEEES---SSEEEEEECTTCCEE-EESEEEESTTHHHHHHHHHHHCCTTCCHHHH
T ss_pred             HHHHHHHHHHHHhcCC-CCceEEEEEEEEC---CCCEEEEECCCCCeE-ecCEEEEcCCHHHHHHHHHhhcccCCCHHHH
Confidence            9999999999999876 8999999999998   579999999999999 6999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCEEEEEEcC-CceEE
Q psy1779         163 FEVCSQVVIQACERDTKSGWGATVYVVEP-DKVTI  196 (204)
Q Consensus       163 ~~~~~~~l~~~~~~d~~~~~~~~v~~i~~-~g~~~  196 (204)
                      ++++++||..+.+||..++++++|++|++ +|++.
T Consensus       160 ~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~  194 (217)
T 1yar_H          160 VDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQ  194 (217)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEE
T ss_pred             HHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEE
Confidence            99999999999999999999999999999 87553

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...

Probab=100.00  E-value=4.2e-48  Score=305.40  Aligned_cols=192  Identities=20%  Similarity=0.258  Sum_probs=184.3

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|+|.+.|.++..++.+||++|++|++++++|..+|++.|.++++.+++.|++++++ +++
T Consensus         6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~v   84 (205)
T 1ryp_H            6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-PST   84 (205)
T ss_dssp             CBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-CCH
T ss_pred             CcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-CCH
Confidence            4689999999999999999999999998888899999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHH
Q psy1779          83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQL  162 (204)
Q Consensus        83 ~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea  162 (204)
                      +.+++++++++|.+|. + |++++|+||||+ +++|+||.+||+|++. +++++|+|+|++.++++||+.|+++||++||
T Consensus        85 ~~la~~l~~~~~~~~~-~-~~~~~lvaG~D~-~~gp~Ly~id~~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea  160 (205)
T 1ryp_H           85 ETAASVFKELCYENKD-N-LTAGIIVAGYDD-KNKGEVYTIPLGGSVH-KLPYAIAGSGSTFIYGYCDKNFRENMSKEET  160 (205)
T ss_dssp             HHHHHHHHHHHHHTTT-T-CCEEEEEEEEET-TTEEEEEEECTTSCCE-EESEEEESGGGGGGHHHHHHHCCTTCCHHHH
T ss_pred             HHHHHHHHHHHHhhhc-C-ceEEEEEEEEec-CCCcEEEEECCCccEE-ecCEEEEEecHHHHHHHHHhccCCCCCHHHH
Confidence            9999999999999875 4 999999999997 6789999999999999 6999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEe
Q psy1779         163 FEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKI  199 (204)
Q Consensus       163 ~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~  199 (204)
                      ++++.+||..+.+||..++++++|++|+++|++.+.+
T Consensus       161 ~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~~~~  197 (205)
T 1ryp_H          161 VDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIF  197 (205)
T ss_dssp             HHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEEEEe
Confidence            9999999999999999999999999999999988776

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J

Probab=100.00  E-value=2.7e-48  Score=305.54  Aligned_cols=191  Identities=18%  Similarity=0.259  Sum_probs=180.6

Q ss_pred             CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779           6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF   85 (204)
Q Consensus         6 g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   85 (204)
                      |+|+|||+++||||||+|+|.+.|.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++.+
T Consensus         1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~   80 (201)
T 1iru_K            1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA   80 (201)
T ss_dssp             CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred             CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHH
Q psy1779          86 AAIASWEL-YARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFE  164 (204)
Q Consensus        86 a~~l~~~l-~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~  164 (204)
                      ++++++.+ |..+..+||++++|+||||+ +++|+||.+||+|++. +++++|+|+|+++++++||+.|+++||++||++
T Consensus        81 a~~~~~~l~~~~~~~~p~~~~~lvaG~D~-~~gp~Ly~id~~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~  158 (201)
T 1iru_K           81 ANFTRRNLADCLRSRTPYHVNLLLAGYDE-HEGPALYYMDYLAALA-KAPFAAHGYGAFLTLSILDRYYTPTISRERAVE  158 (201)
T ss_dssp             HHHHHHHHHHHHTSSSCCCEEEEEEEEET-TTEEEEEEECTTCCEE-ECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCccEEEEEEEEeC-CCCeEEEEECCCcCeE-ECCEEEECCcHHHHHHHHHhcccCCCCHHHHHH
Confidence            99999876 54343269999999999996 6799999999999998 799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCEEEEEEcCCceEEEE
Q psy1779         165 VCSQVVIQACERDTKSGWGATVYVVEPDKVTIRK  198 (204)
Q Consensus       165 ~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~  198 (204)
                      ++.+||..+.+||..++++++|++|+++|++...
T Consensus       159 l~~~al~~a~~rd~~sg~~i~v~vi~~~g~~~~~  192 (201)
T 1iru_K          159 LLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLD  192 (201)
T ss_dssp             HHHHHHHHHHHTBCBCCCCEEEEEEETTEEECCC
T ss_pred             HHHHHHHHHHhhccccCCceEEEEEcCCCeEEee
Confidence            9999999999999999999999999999988654

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...

Probab=100.00  E-value=3e-48  Score=311.83  Aligned_cols=193  Identities=15%  Similarity=0.196  Sum_probs=183.9

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHH-----hcC
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVA-----SEQ   77 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~~~   77 (204)
                      -.+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.|.++++.+++.|++     +++
T Consensus         5 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~   84 (233)
T 1ryp_N            5 IVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAE   84 (233)
T ss_dssp             CEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTT
T ss_pred             ccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhhcC
Confidence            357999999999999999999999999999999999999999999999999999999999999999999999     899


Q ss_pred             CCCCHHHHHHHHHHHHHhcccC-CCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCC-
Q psy1779          78 SPISPDTFAAIASWELYARKLT-SPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP-  155 (204)
Q Consensus        78 ~~~~~~~la~~l~~~l~~~r~~-~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~-  155 (204)
                      ++++++.+++++++++|++|.. |||++++||||||+ +++|+||++||+|++. +++++|+|+|+++++++||+.|++ 
T Consensus        85 ~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~-~~gp~Ly~id~~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~  162 (233)
T 1ryp_N           85 EALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQS-NGDQFLRYVNLLGVTY-SSPTLATGFGAHMANPLLRKVVDRE  162 (233)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECT-TSCEEEEEEETTCCEE-CCSEEECTHHHHHHHHHHTTTCSSG
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcC-CCCEEEEEECCCcCeE-EcCEEEECcCHHHHHHHHHHhhccc
Confidence            9999999999999999998742 89999999999997 5699999999999998 699999999999999999999999 


Q ss_pred             ----CCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCC-ceEEE
Q psy1779         156 ----GLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPD-KVTIR  197 (204)
Q Consensus       156 ----~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~-g~~~~  197 (204)
                          +||++||++++++||..+.+||..++++++|++|+++ |++..
T Consensus       163 ~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~  209 (233)
T 1ryp_N          163 SDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFK  209 (233)
T ss_dssp             GGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEE
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEc
Confidence                9999999999999999999999999999999999999 87654

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M

Probab=100.00  E-value=3.2e-48  Score=308.94  Aligned_cols=193  Identities=18%  Similarity=0.207  Sum_probs=183.5

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHH-hcCCCCC
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVA-SEQSPIS   81 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~~~   81 (204)
                      ..+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.|.++++.+++.|++ +++++++
T Consensus         5 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~   84 (219)
T 1iru_N            5 MVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYS   84 (219)
T ss_dssp             CSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred             ccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            467999999999999999999999999999999999999999999999999999999999999999999998 8999999


Q ss_pred             HHHHHHHHHHHHHhccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCC--CCC
Q psy1779          82 PDTFAAIASWELYARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP--GLS  158 (204)
Q Consensus        82 ~~~la~~l~~~l~~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--~ms  158 (204)
                      ++.+++++++++|++|. .|||++++||||+|+  ++|+||++||+|++. +++++|+|+|+++++++||+.|++  +||
T Consensus        85 v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~--~gp~Ly~id~~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~~~mt  161 (219)
T 1iru_N           85 PRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD--GESFLGYVDMLGVAY-EAPSLATGYGAYLAQPLLREVLEKQPVLS  161 (219)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEET--TEEEEEEECSSCCEE-ECSEEECTTHHHHTHHHHHHHHTSCSCCC
T ss_pred             HHHHHHHHHHHHHHhcccCCCceEEEEEEEEEC--CCCEEEEECCCCCeE-ECCeEEECccHHHHHHHHHhhcCCCCCCC
Confidence            99999999999998863 289999999999996  699999999999999 699999999999999999999999  999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEE
Q psy1779         159 PEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRK  198 (204)
Q Consensus       159 ~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~  198 (204)
                      ++||++++++||..+.+||..++++++|++|+++|++...
T Consensus       162 ~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~  201 (219)
T 1iru_N          162 QTEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEG  201 (219)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCCEEEcC
Confidence            9999999999999999999999999999999999966443

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K

Probab=100.00  E-value=1.5e-47  Score=302.04  Aligned_cols=186  Identities=19%  Similarity=0.202  Sum_probs=179.5

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      ||+|||+++||||||+|+|.+.|.++..++.+|||+|++|+++++||..+|++.|.++++.+++.|+++++++++++.++
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (204)
T 1iru_L            1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS   80 (204)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779          87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC  166 (204)
Q Consensus        87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~  166 (204)
                      +++++++|.+|. +||++++|+||||+  ++|+||++||+|++. +++++|+|+|+++++++||+.|+++||++||++++
T Consensus        81 ~~l~~~~~~~r~-~~~~v~~lvaG~D~--~gp~Ly~idp~G~~~-~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~  156 (204)
T 1iru_L           81 KLLANMVYQYKG-MGLSMGTMICGWDK--RGPGLYYVDSEGNRI-SGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLA  156 (204)
T ss_dssp             HHHHHHHHTTTT-SCCCBEEEEEEECS--SSEEEEEEESSSCEE-ECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CCeeEEEEEEEEeC--CCCEEEEECCCCcEE-EeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHH
Confidence            999999998876 79999999999996  789999999999999 69999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779         167 SQVVIQACERDTKSGWGATVYVVEPDKVTI  196 (204)
Q Consensus       167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~  196 (204)
                      ++||..+.+||..++++++|++|+++|++.
T Consensus       157 ~~al~~~~~rd~~s~~~i~v~vi~~~g~~~  186 (204)
T 1iru_L          157 RRAIYQATYRDAYSGGAVNLYHVREDGWIR  186 (204)
T ss_dssp             HHHHHHHHHHBTTCCSEEEEEEECSSCEEE
T ss_pred             HHHHHHHHHhCccCCCceEEEEEeCCceEE
Confidence            999999999999899999999999999654

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5

Probab=100.00  E-value=8.4e-48  Score=316.94  Aligned_cols=193  Identities=22%  Similarity=0.244  Sum_probs=182.2

Q ss_pred             CCCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCC
Q psy1779           2 SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPIS   81 (204)
Q Consensus         2 ~~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   81 (204)
                      +-.+|+|+|||+++||||||+|+|.+.|.++..++.+||++|++|++++++|..+|++.|.++++.+++.|+++++++++
T Consensus        71 ~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~is  150 (287)
T 3nzj_K           71 KIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERIS  150 (287)
T ss_dssp             -----CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             heccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHH
Q psy1779          82 PDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ  161 (204)
Q Consensus        82 ~~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~e  161 (204)
                      ++.+++++++++|.+|. .||++++||||||+ +++|+||++||+|++. +++++|+|+|+++++++||+.|+++||++|
T Consensus       151 v~~la~~ls~~l~~~r~-~p~~v~~lvaG~D~-~~gp~Ly~iDp~G~~~-~~~~~AiGsgs~~a~~~Le~~y~~dms~eE  227 (287)
T 3nzj_K          151 VAAASKILSNLVYQYKG-AGLSMGTMICGYTR-KEGPTIYYVDSDGTRL-KGDIFCVGSGQTFAYGVLDSNYKWDLSVED  227 (287)
T ss_dssp             HHHHHHHHHHHHHHTTT-SCCCEEEEEEEEET-TTEEEEEEEETTCCEE-ECSEEEESTTHHHHHHHHHTSCCTTCCHHH
T ss_pred             HHHHHHHHHHHHHhhcC-CCceEEEEEEEEcC-CCCCEEEEECCCceEE-EcCeEEEecchHHHHHHHHHhhcCCCCHHH
Confidence            99999999999998876 79999999999997 6899999999999999 799999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEE
Q psy1779         162 LFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIR  197 (204)
Q Consensus       162 a~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~  197 (204)
                      |++++++||..+.+||..++++++|++|+++|++..
T Consensus       228 Ai~la~~aL~~a~~rD~~sg~~i~V~vItkdg~~~l  263 (287)
T 3nzj_K          228 ALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYH  263 (287)
T ss_dssp             HHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHHHhhCcCCCCceEEEEEeCCCEEEe
Confidence            999999999999999999999999999999997654

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H

Probab=100.00  E-value=1.5e-47  Score=307.61  Aligned_cols=187  Identities=17%  Similarity=0.202  Sum_probs=179.7

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      ||+|||+++||||||+|+|.+.|.++..++.+|||+|++|+++++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus         1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (234)
T 3unf_H            1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT   80 (234)
T ss_dssp             CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred             CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence            69999999999999999999999988889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779          87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC  166 (204)
Q Consensus        87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~  166 (204)
                      +++++++|.++  +||++++|+||||+  ++|+||++||+|++. +++++|+|+|++.++++||+.|+++||++||++++
T Consensus        81 ~~l~~~l~~~~--~p~~v~llvaG~D~--~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la  155 (234)
T 3unf_H           81 RILRQTLFRYQ--GHVGASLVVGGVDL--NGPQLYEVHPHGSYS-RLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELL  155 (234)
T ss_dssp             HHHHHHHHHTT--TCSCEEEEEEEEET--TEEEEEEECTTSCEE-ECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHH
T ss_pred             HHHHHHHHhcC--CCccEEEEEEEEeC--CCCEEEEECCCCCEE-eccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHH
Confidence            99999998764  79999999999996  689999999999999 79999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCEEEEEEcCCceEEEE
Q psy1779         167 SQVVIQACERDTKSGWGATVYVVEPDKVTIRK  198 (204)
Q Consensus       167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~  198 (204)
                      ++||..+.++|..++++++|++|+++|++...
T Consensus       156 ~~al~~~~~~D~~sg~~iev~vi~~dg~~~l~  187 (234)
T 3unf_H          156 VEAITAGILSDLGSGGNVDACVITAGGAKLQR  187 (234)
T ss_dssp             HHHHHHHHHHBTTCCSCEEEEEEESSCEEEEE
T ss_pred             HHHHHHHHhhcCCCCCcEEEEEEECCCEEEeC
Confidence            99999999999999999999999999987543

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...

Probab=100.00  E-value=2e-47  Score=302.94  Aligned_cols=187  Identities=21%  Similarity=0.232  Sum_probs=180.0

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      ||+|||+++||||||+|+|.+.|.++..++.+|||+|++|+++++||..+|++.|.++++.+++.|+++++++++++.++
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (212)
T 1ryp_L            1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS   80 (212)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779          87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC  166 (204)
Q Consensus        87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~  166 (204)
                      +++++++|.++. .||++++|+||||+ +++|+||.+||+|++. +++++|+|+|+++++++||+.|+++||++||++++
T Consensus        81 ~~l~~~~~~~~~-~p~~v~~lvaG~D~-~~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la  157 (212)
T 1ryp_L           81 KILSNLVYQYKG-AGLSMGTMICGYTR-KEGPTIYYVDSDGTRL-KGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLG  157 (212)
T ss_dssp             HHHHHHHHHTTT-SCCCBEEEEEEEET-TTEEEEEEEETTCCEE-ECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred             HHHHHHHHhhCC-CCceEEEEEEEEeC-CCCCEEEEEcCCceeE-ecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHH
Confidence            999999998865 69999999999996 5799999999999999 69999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779         167 SQVVIQACERDTKSGWGATVYVVEPDKVTI  196 (204)
Q Consensus       167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~  196 (204)
                      ++||..+.+||..++++++|++|+++|++.
T Consensus       158 ~~al~~~~~rd~~s~~~i~v~vi~~~g~~~  187 (212)
T 1ryp_L          158 KRSILAAAHRDAYSGGSVNLYHVTEDGWIY  187 (212)
T ss_dssp             HHHHHHHHHHBTTCCSEEEEEEEETTEEEE
T ss_pred             HHHHHHHHHhccccCCceEEEEEcCCceEE
Confidence            999999999999999999999999999654

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N

Probab=100.00  E-value=2.2e-47  Score=299.93  Aligned_cols=190  Identities=19%  Similarity=0.233  Sum_probs=180.6

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      ||+|||+++||||||+|+|.+.|.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++.++
T Consensus         1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a   80 (199)
T 3unf_N            1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA   80 (199)
T ss_dssp             CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred             CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            69999999999999999999999899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779          87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC  166 (204)
Q Consensus        87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~  166 (204)
                      +++++++|.+|  +||++++||||||+ +++|+||+  |+|++.+..+++++|+|+++++++||+.|+++||++||++++
T Consensus        81 ~~l~~~l~~~~--~p~~v~~lvaG~D~-~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~la  155 (199)
T 3unf_N           81 NVVKNISYKYR--EDLLAHLIVAGWDQ-REGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFT  155 (199)
T ss_dssp             HHHHHHHHHTT--TTCCCCEEEEEEET-TTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHHH
T ss_pred             HHHHHHHHhcC--CCceEEEEEEEEeC-CCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence            99999999876  79999999999997 68899999  999976445677789999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCEEEEEEcCCceEEEEecc
Q psy1779         167 SQVVIQACERDTKSGWGATVYVVEPDKVTIRKIAT  201 (204)
Q Consensus       167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~  201 (204)
                      .+||..+.+||..++++++|++|+++|++++.++.
T Consensus       156 ~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~  190 (199)
T 3unf_N          156 TNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILG  190 (199)
T ss_dssp             HHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECG
T ss_pred             HHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCc
Confidence            99999999999999999999999999999988875

>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...

Probab=100.00  E-value=5.6e-48  Score=312.05  Aligned_cols=192  Identities=17%  Similarity=0.100  Sum_probs=180.2

Q ss_pred             CCC-CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCC
Q psy1779           3 LND-GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPIS   81 (204)
Q Consensus         3 ~~~-g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   81 (204)
                      .++ |+|+|||+++||||||+|+|.+ +.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++
T Consensus        26 v~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~  104 (243)
T 1ryp_A           26 TNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMP  104 (243)
T ss_dssp             TTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             HhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            356 9999999999999999999998 77888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH--Hhccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCC---
Q psy1779          82 PDTFAAIASWEL--YARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP---  155 (204)
Q Consensus        82 ~~~la~~l~~~l--~~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~---  155 (204)
                      ++.+++++++++  |++|. .|||+|++||||||+ +++|+||++||+|++. +++++|+|++++.++++||+.|++   
T Consensus       105 v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~~dp~G~~~-~~~~~a~G~gs~~a~~~Le~~~~~~~~  182 (243)
T 1ryp_A          105 CDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDE-ELGPSIYKTDPAGYYV-GYKATATGPKQQEITTNLENHFKKSKI  182 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEET-TTEEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHhccCCccccceEEEEEEEcC-CCCcEEEEEcCCCCEE-EEEEEEECCCcHHHHHHHHHHhhhccc
Confidence            999999999999  77763 289999999999996 6899999999999999 699999999999999999999998   


Q ss_pred             ----CCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEec
Q psy1779         156 ----GLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIA  200 (204)
Q Consensus       156 ----~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~  200 (204)
                          +||++||++++++||..+.+|| .++++++|++|+++|  ++.++
T Consensus       183 ~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g--~~~l~  228 (243)
T 1ryp_A          183 DHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDK--FFTLS  228 (243)
T ss_dssp             SSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTE--EEECC
T ss_pred             ccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCC--eEECC
Confidence                9999999999999999999999 789999999999999  44443

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2

Probab=100.00  E-value=3.1e-47  Score=309.97  Aligned_cols=186  Identities=20%  Similarity=0.239  Sum_probs=177.1

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|+|.+.|.++..++.+|||+|++|+++++||..+|++.|.++++.+++.|++++++++++
T Consensus        26 v~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~v  105 (261)
T 3nzj_H           26 TSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRV  105 (261)
T ss_dssp             ----CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCH
T ss_pred             cccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCCCCH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHH
Q psy1779          83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQL  162 (204)
Q Consensus        83 ~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea  162 (204)
                      +.+++++++++|+++  +||++++||||||+  ++|+||++||+|++. +++++|+|+|++.++++||+.|+++||+|||
T Consensus       106 ~~~a~~l~~~l~~~~--~~~gv~llvaG~D~--~Gp~Ly~iDp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEA  180 (261)
T 3nzj_H          106 VSALQMLKQHLFKYQ--GHIGAYLIVAGVDP--TGSHLFSIHAHGSTD-VGYYLSLGSGSLAAMAVLESHWKQDLTKEEA  180 (261)
T ss_dssp             HHHHHHHHHHHHHTT--TCSCEEEEEEEEET--TEEEEEEECTTSCEE-ECSEEEESTTHHHHHHHHHHHCCSSCCHHHH
T ss_pred             HHHHHHHHHHHHHhc--CcccEEEEEEEEeC--CCCEEEEECCCccEE-ecCeEEeccchHHHHHHHHHHhccCCCHHHH
Confidence            999999999998765  79999999999997  689999999999999 6999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCEEEEEEcCCc
Q psy1779         163 FEVCSQVVIQACERDTKSGWGATVYVVEPDK  193 (204)
Q Consensus       163 ~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g  193 (204)
                      ++++.+||..+.++|..++++++|++|+++|
T Consensus       181 ~~la~~al~~a~~rD~~sg~~iev~vI~kdg  211 (261)
T 3nzj_H          181 IKLASDAIQAGIWNDLGSGSNVDVCVMEIGK  211 (261)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSCEEEEEEETTS
T ss_pred             HHHHHHHHHHHHhhCCCCCCcEEEEEEECCC
Confidence            9999999999999999999999999999999

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...

Probab=100.00  E-value=7.4e-47  Score=301.68  Aligned_cols=186  Identities=20%  Similarity=0.223  Sum_probs=179.0

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      ||+|||+++||||||+|+|.+.|.++..++.+||++|++|+++++||..+|++.|.++++.+++.|+++++++++++.++
T Consensus         1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a   80 (222)
T 1ryp_I            1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL   80 (222)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            68999999999999999999999988889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779          87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC  166 (204)
Q Consensus        87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~  166 (204)
                      +++++.+|+++  +||++++|+||+|+  ++|+||.+||+|++. +++++|+|+|++.++++||+.|+++||++||++++
T Consensus        81 ~~l~~~l~~~~--~p~~v~~lvaG~D~--~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la  155 (222)
T 1ryp_I           81 QMLKQHLFKYQ--GHIGAYLIVAGVDP--TGSHLFSIHAHGSTD-VGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLA  155 (222)
T ss_dssp             HHHHHHHHHTT--TCSCEEEEEEEEET--TEEEEEEECTTSCEE-ECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHH
T ss_pred             HHHHHHHhhcC--CCCCeeEEEEEEeC--CCCEEEEECCCCCEE-ecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHH
Confidence            99999998875  79999999999996  689999999999998 79999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCEEEEEEcCCc-eEEE
Q psy1779         167 SQVVIQACERDTKSGWGATVYVVEPDK-VTIR  197 (204)
Q Consensus       167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g-~~~~  197 (204)
                      ++||..+.++|..++++++|++|+++| ++..
T Consensus       156 ~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~  187 (222)
T 1ryp_I          156 SDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYL  187 (222)
T ss_dssp             HHHHHHHHHHCTTCCSCEEEEEEETTSCEEEE
T ss_pred             HHHHHHHHhccccCCCcEEEEEEECCCCEEEE
Confidence            999999999999899999999999999 7753

>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G

Probab=100.00  E-value=3.7e-47  Score=307.80  Aligned_cols=193  Identities=18%  Similarity=0.127  Sum_probs=181.3

Q ss_pred             CCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHH
Q psy1779           5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDT   84 (204)
Q Consensus         5 ~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (204)
                      +|+|+|||+++||||||+|+|.+ +.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++.
T Consensus        35 ~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~  113 (246)
T 1iru_A           35 GGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDM  113 (246)
T ss_dssp             TCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred             CCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence            39999999999999999999998 67888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH--Hhccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCC--CCCH
Q psy1779          85 FAAIASWEL--YARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP--GLSP  159 (204)
Q Consensus        85 la~~l~~~l--~~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--~ms~  159 (204)
                      +++++++++  |+++. .|||+|++||||||+ +++|+||++||+|++. +++++|+|+|++.++++||+.|++  +||+
T Consensus       114 la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~-~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~  191 (246)
T 1iru_A          114 LCKRIADISQVYTQNAEMRPLGCCMILIGIDE-EQGPQVYKCDPAGYYC-GFKATAAGVKQTESTSFLEKKVKKKFDWTF  191 (246)
T ss_dssp             HHHHHHHHHHHHHHBSSBCCCSEEEEEEEEET-TTEEEEEEECTTSCEE-EBSEEEEETTHHHHHHHHHHHTTSCCCCCH
T ss_pred             HHHHHHHHHHHHhcCCCCCCcceEEEEEEEeC-CCCeEEEEEcCCeeEE-EeeEEEECCCcHHHHHHHHHhhcccCCCCH
Confidence            999999985  66553 289999999999996 6899999999999999 699999999999999999999999  9999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEecc
Q psy1779         160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIAT  201 (204)
Q Consensus       160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~  201 (204)
                      +||++++++||..+.+|| .++++++|++|+++|++++.++.
T Consensus       192 eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l~~  232 (246)
T 1iru_A          192 EQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILTE  232 (246)
T ss_dssp             HHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEECCH
T ss_pred             HHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEECCH
Confidence            999999999999999999 88999999999999987777653

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*

Probab=100.00  E-value=3.4e-47  Score=311.12  Aligned_cols=192  Identities=15%  Similarity=0.192  Sum_probs=183.2

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHH-----hcCC
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVA-----SEQS   78 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~~~~   78 (204)
                      .+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.|.++++.+++.|++     ++++
T Consensus        39 ~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~~~  118 (266)
T 1g0u_M           39 VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEE  118 (266)
T ss_dssp             EEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTT
T ss_pred             ccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchhhcCC
Confidence            46999999999999999999999999999999999999999999999999999999999999999999998     8999


Q ss_pred             CCCHHHHHHHHHHHHHhcccC-CCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCC--
Q psy1779          79 PISPDTFAAIASWELYARKLT-SPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP--  155 (204)
Q Consensus        79 ~~~~~~la~~l~~~l~~~r~~-~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--  155 (204)
                      +++++.+++++++++|++|.. |||++++||||+|+ +++|+||.+||+|++. +++++|+|+|+++++++||+.|++  
T Consensus       119 ~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~-~~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~~  196 (266)
T 1g0u_M          119 ALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQS-NGDQFLRYVNLLGVTY-SSPTLATGFGAHMANPLLRKVVDRES  196 (266)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECT-TSCEEEEEEETTCCEE-CCSEEECTHHHHTHHHHHTTTCSSGG
T ss_pred             CCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcC-CCCEEEEEECCCCCEE-eCCEEEEccCHHHHHHHHHHhhcccc
Confidence            999999999999999998742 89999999999997 5699999999999998 699999999999999999999999  


Q ss_pred             ---CCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCC-ceEEE
Q psy1779         156 ---GLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPD-KVTIR  197 (204)
Q Consensus       156 ---~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~-g~~~~  197 (204)
                         +||++||++++++||..+.+||..++++++|++|+++ |++..
T Consensus       197 ~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~  242 (266)
T 1g0u_M          197 DIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFK  242 (266)
T ss_dssp             GGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEE
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEc
Confidence               9999999999999999999999999999999999999 87654

>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...

Probab=100.00  E-value=7.8e-47  Score=305.53  Aligned_cols=195  Identities=10%  Similarity=0.105  Sum_probs=181.0

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|+|.+.|.....++.+|||+|++|+++++||..+|++.|.++++.+++.|+++++++++++
T Consensus        29 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~  108 (244)
T 1ryp_C           29 SHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVE  108 (244)
T ss_dssp             TTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             hcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence            57999999999999999999999998777688999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc--c-cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHH
Q psy1779          84 TFAAIASWELYAR--K-LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPE  160 (204)
Q Consensus        84 ~la~~l~~~l~~~--r-~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~  160 (204)
                      .+++++++++|..  + ..|||++++||||||+ +++|+||++||+|++. +++++|+|+|++.++++||+.|+++||++
T Consensus       109 ~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~ms~e  186 (244)
T 1ryp_C          109 ILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDD-RYGYQLYTSNPSGNYT-GWKAISVGANTSAAQTLLQMDYKDDMKVD  186 (244)
T ss_dssp             HHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEET-TTEEEEEEECTTCCEE-EBSEEEESTTHHHHHHHHHHHCCTTCCHH
T ss_pred             HHHHHHHHHHHHHhccCCccceEEEEEEEEEcC-CCCCEEEEECCCccEE-eeeEEEECCCcHHHHHHHHHhhhcCCCHH
Confidence            9999999999543  2 2389999999999995 5899999999999999 69999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCEEEEEEc--CCceE--EEEec
Q psy1779         161 QLFEVCSQVVIQACERDTKSGWGATVYVVE--PDKVT--IRKIA  200 (204)
Q Consensus       161 ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~--~~g~~--~~~~~  200 (204)
                      ||++++++||..+.+||..++++++|++|+  ++|..  ++.++
T Consensus       187 ea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~  230 (244)
T 1ryp_C          187 DAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFK  230 (244)
T ss_dssp             HHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECC
T ss_pred             HHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECC
Confidence            999999999999999955679999999999  99863  55554

>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A

Probab=100.00  E-value=8.6e-47  Score=303.34  Aligned_cols=187  Identities=14%  Similarity=0.131  Sum_probs=176.1

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|+|.+ +.++..++.+||++|++|++++++|..+|++.|.++++.+++.|+++++++++++
T Consensus        29 ~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~  107 (233)
T 1iru_B           29 AGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTA  107 (233)
T ss_dssp             HTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             HcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence            579999999999999999999998 6788888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH--hccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHH
Q psy1779          84 TFAAIASWELY--ARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPE  160 (204)
Q Consensus        84 ~la~~l~~~l~--~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~  160 (204)
                      .++++++++++  +++. .|||++++||||||.  ++|+||++||+|++. +++++|+|+|++.++++||+.|+++||++
T Consensus       108 ~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~--~gp~Ly~id~~G~~~-~~~~~aiG~gs~~a~~~Le~~~~~~ms~e  184 (233)
T 1iru_B          108 QLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE--GRPYLFQSDPSGAYF-AWKATAMGKNYVNGKTFLEKRYNEDLELE  184 (233)
T ss_dssp             HHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS--SSEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHHHCCTTCCHH
T ss_pred             HHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC--CCCeEEEECCCCCEE-EeeEEEECCCCHHHHHHHHHHhccCCCHH
Confidence            99999999994  4432 289999999999995  789999999999999 69999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceE
Q psy1779         161 QLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVT  195 (204)
Q Consensus       161 ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~  195 (204)
                      ||++++++||..+.++| .++++++|++|+++|++
T Consensus       185 ea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g~~  218 (233)
T 1iru_B          185 DAIHTAILTLKESFEGQ-MTEDNIEVGICNEAGFR  218 (233)
T ss_dssp             HHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCCEE
Confidence            99999999999999999 77999999999999954

>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B

Probab=100.00  E-value=1.4e-46  Score=306.80  Aligned_cols=195  Identities=10%  Similarity=0.122  Sum_probs=182.8

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|+++++||..+|++.|.++++.+++.|+++++++++++
T Consensus        29 ~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~  108 (261)
T 1iru_C           29 GHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCE  108 (261)
T ss_dssp             TTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             hcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence            68999999999999999999999999888887899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc--c-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCC-CCCH
Q psy1779          84 TFAAIASWELYARK--L-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP-GLSP  159 (204)
Q Consensus        84 ~la~~l~~~l~~~r--~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~-~ms~  159 (204)
                      .+++++++++|..+  . .|||++++||||||+ +++|+||++||+|++. +++++|+|+|+++++++||+.|++ +||+
T Consensus       109 ~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~~ms~  186 (261)
T 1iru_C          109 QLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDK-HYGFQLYQSDPSGNYG-GWKATCIGNNSAAAVSMLKQDYKEGEMTL  186 (261)
T ss_dssp             HHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEET-TTEEEEEEEETTTEEE-ECSEEEESTTTTHHHHHHHHHCCTTCCCH
T ss_pred             HHHHHHHHHHHHhccccCcCcceEEEEEEEEeC-CCCcEEEEECCCceEE-eeeeEEeCcccHHHHHHHHHhhccCCCCH
Confidence            99999999998653  1 389999999999996 6799999999999999 699999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCce--EEEEec
Q psy1779         160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKV--TIRKIA  200 (204)
Q Consensus       160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~--~~~~~~  200 (204)
                      +||++++++||..+.++|..++++++|++|+++|.  .++.++
T Consensus       187 eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~  229 (261)
T 1iru_C          187 KSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLK  229 (261)
T ss_dssp             HHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECC
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECC
Confidence            99999999999999999999999999999999985  245543

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H

Probab=100.00  E-value=3.6e-46  Score=299.82  Aligned_cols=185  Identities=18%  Similarity=0.198  Sum_probs=178.0

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      ||+|||+++||||||+|+|.+.|.++..++.+|||+|++|+++++||..+|++.|.++++.+++.|+++++++++++.++
T Consensus         1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (234)
T 1iru_I            1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN   80 (234)
T ss_dssp             CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred             CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            68999999999999999999999988888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779          87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC  166 (204)
Q Consensus        87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~  166 (204)
                      +++++.+|.++  +||++++|+||||+  ++|+||.+||+|++. +++++|+|+|++.++++||+.|+++||++||++++
T Consensus        81 ~~l~~~l~~~~--~~~~v~llvaG~D~--~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la  155 (234)
T 1iru_I           81 RMLKQMLFRYR--GYIGAALVLGGVDV--TGPHLYSIYPHGSTD-KLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLV  155 (234)
T ss_dssp             HHHHHHHHHTT--TCSCEEEEEEEECS--SCEEEEEECTTSCEE-ECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHH
T ss_pred             HHHHHHHHhcC--CCCceeEEEEEEcC--CCCEEEEECCCCCEE-ecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHH
Confidence            99999998875  69999999999996  689999999999998 79999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779         167 SQVVIQACERDTKSGWGATVYVVEPDKVTI  196 (204)
Q Consensus       167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~  196 (204)
                      .+||..+.++|..++++++|++|+++|++.
T Consensus       156 ~~al~~a~~~d~~sg~~i~v~vi~k~g~~~  185 (234)
T 1iru_I          156 SEAIAAGIFNDLGSGSNIDLCVISKNKLDF  185 (234)
T ss_dssp             HHHHHHHHHHCTTCCSCEEEEEEETTEEEC
T ss_pred             HHHHHHHHHhcccCCCCEEEEEEECCcEEE
Confidence            999999999999899999999999999763

>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A

Probab=100.00  E-value=2e-46  Score=301.26  Aligned_cols=191  Identities=13%  Similarity=0.099  Sum_probs=177.8

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|+|.+.+ ++..++.+||++|++|+++++||..+|++.|.++++.+++.|+.++++++++
T Consensus        31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v  109 (233)
T 1yar_A           31 VKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNI  109 (233)
T ss_dssp             HTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            357999999999999999999999986 6667889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc---cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779          83 DTFAAIASWELYARK---LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP  159 (204)
Q Consensus        83 ~~la~~l~~~l~~~r---~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~  159 (204)
                      +.+++++++++|..+   ..|||++++||||||+  ++|+||.+||+|++. +++++|+|+|++.++++||+.|+++||+
T Consensus       110 ~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~--~gp~Ly~id~~G~~~-~~~~~aiG~gs~~a~~~Le~~~~~~~s~  186 (233)
T 1yar_A          110 ENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ--IGPRLFDCDPAGTIN-EYKATAIGSGKDAVVSFLEREYKENLPE  186 (233)
T ss_dssp             HHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS--SCEEEEEECTTCCEE-EBSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred             HHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC--CCCEEEEECCCCCEE-eeeEEEEcCCcHHHHHHHHHHhccCCCH
Confidence            999999999998542   2389999999999996  789999999999999 6999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEe
Q psy1779         160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKI  199 (204)
Q Consensus       160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~  199 (204)
                      +||++++++||..+.++|. ++++++|++|+++|. ++.+
T Consensus       187 eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~-~~~~  224 (233)
T 1yar_A          187 KEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNK-YRIY  224 (233)
T ss_dssp             HHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSC-CEEC
T ss_pred             HHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCC-EEEC
Confidence            9999999999999999997 799999999999984 3443

>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...

Probab=100.00  E-value=2.5e-46  Score=302.27  Aligned_cols=193  Identities=14%  Similarity=0.114  Sum_probs=179.7

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|+|.+.|.+. .++.+|||+|++|++++++|..+|++.|.++++.+++.|++++++++++
T Consensus        23 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v  101 (242)
T 1ryp_E           23 IKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINV  101 (242)
T ss_dssp             HTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            367999999999999999999999998777 8889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc--c-c------CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccC
Q psy1779          83 DTFAAIASWELYAR--K-L------TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFW  153 (204)
Q Consensus        83 ~~la~~l~~~l~~~--r-~------~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~  153 (204)
                      +.+++++++++|..  + .      .|||++++||||||+ +++|+||++||+|++. +++++|+|+|+++++++||+.|
T Consensus       102 ~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~  179 (242)
T 1ryp_E          102 ESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDA-DDGYQLFHAEPSGTFY-RYNAKAIGSGSEGAQAELLNEW  179 (242)
T ss_dssp             HHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEET-TTEEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeC-CCCCEEEEECCCCCEe-ccCEEEECCCCHHHHHHHHHhh
Confidence            99999999988763  1 1      389999999999996 5899999999999999 6999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEec
Q psy1779         154 QPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIA  200 (204)
Q Consensus       154 ~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~  200 (204)
                      +++||++||++++++||..+.+| ..++++++|++|+++|. ++.++
T Consensus       180 ~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~-~~~~~  224 (242)
T 1ryp_E          180 HSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDG-FKIYD  224 (242)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTE-EEECC
T ss_pred             ccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCC-eEECC
Confidence            99999999999999999999999 67899999999999997 45544

>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D

Probab=100.00  E-value=4e-46  Score=300.85  Aligned_cols=192  Identities=14%  Similarity=0.169  Sum_probs=178.9

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|+|.+.|... .++.+||++|++|+++++||..+|++.|.++++.+++.|+.++++++++
T Consensus        31 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v  109 (241)
T 1iru_E           31 IKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTV  109 (241)
T ss_dssp             HTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            357999999999999999999999999877 8899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH--Hhccc------CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCC
Q psy1779          83 DTFAAIASWEL--YARKL------TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ  154 (204)
Q Consensus        83 ~~la~~l~~~l--~~~r~------~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~  154 (204)
                      +.+++++++++  |+++.      .|||++++||||||.  ++|+||.+||+|++. +++++|+|+|++.++++||+.|+
T Consensus       110 ~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~--~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~  186 (241)
T 1iru_E          110 ESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE--KGPQLFHMDPSGTFV-QCDARAIGSASEGAQSSLQELYH  186 (241)
T ss_dssp             HHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET--TEEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC--CCCEEEEECCCCcEE-ecceEEECCCcHHHHHHHHHHhc
Confidence            99999999998  43432      379999999999994  899999999999999 69999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEec
Q psy1779         155 PGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIA  200 (204)
Q Consensus       155 ~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~  200 (204)
                      ++||++||++++++||..+.++ ..++++++|++|+++|. ++.++
T Consensus       187 ~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~-~~~l~  230 (241)
T 1iru_E          187 KSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQN-FHMFT  230 (241)
T ss_dssp             TTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSC-CEECC
T ss_pred             cCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCC-eEECC
Confidence            9999999999999999999999 67899999999999997 45544

>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...

Probab=100.00  E-value=1.4e-45  Score=297.61  Aligned_cols=192  Identities=19%  Similarity=0.255  Sum_probs=177.6

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|+|.+.|.+..+++.+|||+|++|++++++|..+|++.|.++++.+++.|++++++++++
T Consensus        25 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v  104 (241)
T 1ryp_D           25 VKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTV  104 (241)
T ss_dssp             HTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            35799999999999999999999999988777789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCC-CceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccC---CC
Q psy1779          83 DTFAAIASWELYAR--KL-TSPLFINPIIAGFYPDS-GEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFW---QP  155 (204)
Q Consensus        83 ~~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~-~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~---~~  155 (204)
                      +.+++++++++|..  +. .|||++++||||||+ + ++|+||++||+|++. +++++|+|+|++.++++||+.|   ++
T Consensus       105 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~-~~~gp~Ly~idp~G~~~-~~~~~aiG~gs~~a~~~Le~~~~~~~~  182 (241)
T 1ryp_D          105 EYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDP-RDDEPKLYQTEPSGIYS-SWSAQTIGRNSKTVREFLEKNYDRKEP  182 (241)
T ss_dssp             HHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCT-TCCSCEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHTTCCTTSC
T ss_pred             HHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcC-CCCCeeEEEECCCCCEE-EeeeEEECCCcHHHHHHHHHhhhcccC
Confidence            99999999999874  22 289999999999996 4 899999999999999 6999999999999999999999   99


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEec
Q psy1779         156 GLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIA  200 (204)
Q Consensus       156 ~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~  200 (204)
                      +||++||++++++||..+.+   .++++++|++|+++|. ++.++
T Consensus       183 ~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~-~~~l~  223 (241)
T 1ryp_D          183 PATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSD-IVALS  223 (241)
T ss_dssp             CCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTE-EEECC
T ss_pred             CCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCc-EEECC
Confidence            99999999999999999986   6789999999999973 44443

>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F

Probab=100.00  E-value=5.8e-46  Score=302.02  Aligned_cols=186  Identities=12%  Similarity=0.128  Sum_probs=175.4

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|+|.+.|.++. ++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++
T Consensus        31 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~-~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~  109 (254)
T 1iru_G           31 ENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLK  109 (254)
T ss_dssp             HTSCCEEEEECSSBEEEEEEEECSCTTBCT-TTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             hcCCCEEEEEECCEEEEEEecccCCCCcCc-CcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            579999999999999999999999988874 7899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc--c-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHH
Q psy1779          84 TFAAIASWELYARK--L-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPE  160 (204)
Q Consensus        84 ~la~~l~~~l~~~r--~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~  160 (204)
                      .+++++++++|.++  . .|||+|++||||||+ +++|+||++||+|++. +++++|+|+|++.++++||+.|+++||++
T Consensus       110 ~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~ms~e  187 (254)
T 1iru_G          110 HLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSV-NDGAQLYMIDPSGVSY-GYWGCAIGKARQAAKTEIEKLQMKEMTCR  187 (254)
T ss_dssp             HHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEET-TTEEEEEEECTTCCEE-EBSEEEESTTHHHHHHHHTTSCGGGCCHH
T ss_pred             HHHHHHHHHHHHhccccccccceEEEEEEEEeC-CCCcEEEEEcCCCCEE-eeeeEEecCccHHHHHHHHHhccCCCCHH
Confidence            99999999997652  2 289999999999996 5899999999999999 69999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCEEEEEEcCC
Q psy1779         161 QLFEVCSQVVIQACERDTKSGWGATVYVVEPD  192 (204)
Q Consensus       161 ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~  192 (204)
                      ||+++++++|..+.+++..++++++|++|+++
T Consensus       188 ea~~la~~al~~~~~~~~~~~~~iev~vi~~~  219 (254)
T 1iru_G          188 DIVKEVAKIIYIVHDEVKDKAFELELSWVGEL  219 (254)
T ss_dssp             HHHHHHHHHHHHHSCSSSSCCEEEEEEECBTT
T ss_pred             HHHHHHHHHHHHHHhhccCCCCcEEEEEEEcC
Confidence            99999999999999988778889999999987

>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...

Probab=100.00  E-value=1.5e-45  Score=297.93  Aligned_cols=190  Identities=15%  Similarity=0.199  Sum_probs=177.4

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|+|.+.|.++.++ .+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++
T Consensus        28 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~-~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~  106 (244)
T 1ryp_G           28 ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK-NVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIP  106 (244)
T ss_dssp             HTSCCEEEEEETTEEEEEEEEECCCTTBCTTT-SCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             HCCCCEEEEEECCEEEEEEecccCCCCccccc-cCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            57999999999999999999999998877554 59999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhcc---CCCCC
Q psy1779          84 TFAAIASWELYAR--KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESF---WQPGL  157 (204)
Q Consensus        84 ~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~---~~~~m  157 (204)
                      .++++++++++..  +. .|||++++||||||+  ++|+||++||+|++. +++++|+|+|++.++++||+.   |+++|
T Consensus       107 ~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~--~gp~Ly~idp~G~~~-~~~~~aiG~gs~~a~~~Le~~~~~~~~~m  183 (244)
T 1ryp_G          107 AFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK--NGAHLYMLEPSGSYW-GYKGAATGKGRQSAKAELEKLVDHHPEGL  183 (244)
T ss_dssp             HHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET--TEEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHHHHHhcccCccCceEEEEEEEEeC--CcCEEEEECCCCCEE-EeeEEEECCChHHHHHHHHHhHhhcCCCC
Confidence            9999999999543  32 289999999999995  789999999999999 699999999999999999997   99999


Q ss_pred             CHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcC---CceEEE
Q psy1779         158 SPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP---DKVTIR  197 (204)
Q Consensus       158 s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~---~g~~~~  197 (204)
                      |++||++++++||..+.++|..++++++|++|++   +|++..
T Consensus       184 s~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g~~~~  226 (244)
T 1ryp_G          184 SAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKF  226 (244)
T ss_dssp             CHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTTSEEE
T ss_pred             CHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCCeeee
Confidence            9999999999999999999998999999999998   787754

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=6.7e-46  Score=302.90  Aligned_cols=192  Identities=19%  Similarity=0.221  Sum_probs=178.9

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|+|.+.+ ++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++
T Consensus        36 ~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~  114 (264)
T 3h4p_A           36 RRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIE  114 (264)
T ss_dssp             HHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHH
T ss_pred             hcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Confidence            46999999999999999999999986 66788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHH
Q psy1779          84 TFAAIASWELYAR--KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPE  160 (204)
Q Consensus        84 ~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~  160 (204)
                      .++++++++++..  +. .|||+|++||||||+  ++|+||++||+|++. +++++|+|+|++.++++||+.|+++||++
T Consensus       115 ~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~--~gp~Ly~iDp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~ms~e  191 (264)
T 3h4p_A          115 MLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK--NEARLFETDPSGALI-EYKATAIGSGRPVVMELLEKEYRDDITLD  191 (264)
T ss_dssp             HHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET--TEEEEEEECTTCCCE-EESEEEESTTHHHHTTTHHHHCCTTCCSH
T ss_pred             HHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC--CcCEEEEECCCceEE-ecCeEEECCCHHHHHHHHHHhccCCCCHH
Confidence            9999999998643  32 389999999999996  789999999999999 69999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEecc
Q psy1779         161 QLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIAT  201 (204)
Q Consensus       161 ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~  201 (204)
                      ||++++++||..+.++  .++++++|++|++++..++.++.
T Consensus       192 ea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~~  230 (264)
T 3h4p_A          192 EGLELAITALTKANED--IKPENVDVCIITVKDAQFKKIPV  230 (264)
T ss_dssp             HHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECCT
T ss_pred             HHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECCH
Confidence            9999999999999987  68999999999998877777654

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4

Probab=100.00  E-value=4.2e-45  Score=293.86  Aligned_cols=188  Identities=15%  Similarity=0.169  Sum_probs=175.9

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      ||+|||+++||||||+|+|.+.|.++..++.+||++|++|+++++||..+|++.|.++++.+++.|+++++++++++.++
T Consensus         1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la   80 (235)
T 1q5q_H            1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA   80 (235)
T ss_dssp             CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc--cCCCceeeEEEEEEeCCCCc-----eEEEEEcCCCCeeeec--ceEEEccchhhHHHhhhccCCCCC
Q psy1779          87 AIASWELYARK--LTSPLFINPIIAGFYPDSGE-----VFLSTLDMAGCETRKT--DFVAGGSAQNMIMGIGESFWQPGL  157 (204)
Q Consensus        87 ~~l~~~l~~~r--~~~P~~v~~lvaG~d~~~~~-----p~Ly~id~~G~~~~~~--~~~a~G~g~~~~~~~Le~~~~~~m  157 (204)
                      +.+++++|.++  ..|||++++||||||+ +++     |+||++||+|++. ++  +++|+|+|+++++++||+.|+++|
T Consensus        81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~-~~g~~~~~p~Ly~idp~G~~~-~~~~~~~aiGsgs~~a~~~Le~~~~~~m  158 (235)
T 1q5q_H           81 NRLASMVRGNLGAAMQGLAVVPLLVGYDL-DADDESRAGRIVSYDVVGGRY-EERAGYHAVGSGSLFAKSALKKIYSPDS  158 (235)
T ss_dssp             HHHHHHHHTTHHHHTTTCCEEEEEEEECT-TCSSTTSCEEEEEECTTSCEE-ECCSSEEEESTTHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHHHHhhhcccceEEEEEEEEC-CCCccCCCCEEEEECCCCceE-EeCCCeEEECCCHHHHHHHHHhhcCCCC
Confidence            99999998753  2389999999999997 546     9999999999999 68  999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhccccCCC--E-----EEEEEcCCceEE
Q psy1779         158 SPEQLFEVCSQVVIQACERDTKSGWG--A-----TVYVVEPDKVTI  196 (204)
Q Consensus       158 s~~ea~~~~~~~l~~~~~~d~~~~~~--~-----~v~~i~~~g~~~  196 (204)
                      |++||++++++||..+.++|..+++.  +     +|++|+++|++.
T Consensus       159 s~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g~~~  204 (235)
T 1q5q_H          159 DEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVH  204 (235)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEE
T ss_pred             CHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCCeEE
Confidence            99999999999999999999887642  2     999999999654

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H

Probab=100.00  E-value=2.9e-45  Score=302.74  Aligned_cols=192  Identities=15%  Similarity=0.163  Sum_probs=179.7

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|+|.+.|.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|++++++++++
T Consensus        62 v~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv  141 (294)
T 1q5r_H           62 APHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTF  141 (294)
T ss_dssp             SCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCCH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccc--CCCceeeEEEEEEeCCCCc-----eEEEEEcCCCCeeeec--ceEEEccchhhHHHhhhccC
Q psy1779          83 DTFAAIASWELYARKL--TSPLFINPIIAGFYPDSGE-----VFLSTLDMAGCETRKT--DFVAGGSAQNMIMGIGESFW  153 (204)
Q Consensus        83 ~~la~~l~~~l~~~r~--~~P~~v~~lvaG~d~~~~~-----p~Ly~id~~G~~~~~~--~~~a~G~g~~~~~~~Le~~~  153 (204)
                      +.+++++++++|.++.  .|||+|++||||||+ +++     |+||++||+|+++ ++  +|+|+|+|+++++++||+.|
T Consensus       142 ~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~-~~g~~~~~p~Ly~iDp~G~~~-e~~~~~~AiGsgs~~a~~~Le~~y  219 (294)
T 1q5r_H          142 DGKANRLASMVRGNLGAAMQGLAVVPLLVGYDL-DADDESRAGRIVSYDVVGGRY-EERAGYHAVGSGSLFAKSALKKIY  219 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECT-TCSCTTSCEEEEEECSSSCEE-ECCSSEEEESTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeC-CCCcCCCCCEEEEECCCCeEE-ecCCCeEEEecCcHHHHHHHHHhc
Confidence            9999999999987532  489999999999997 546     9999999999999 68  89999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhccccCCC--E-----EEEEEcCCceEE
Q psy1779         154 QPGLSPEQLFEVCSQVVIQACERDTKSGWG--A-----TVYVVEPDKVTI  196 (204)
Q Consensus       154 ~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~--~-----~v~~i~~~g~~~  196 (204)
                      +++||++||++++++||..+.++|..+++.  +     +|++|+++|++.
T Consensus       220 ~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g~~~  269 (294)
T 1q5r_H          220 SPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVH  269 (294)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCCEEE
Confidence            999999999999999999999999887643  5     999999999654

>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*

Probab=100.00  E-value=2.5e-45  Score=297.31  Aligned_cols=184  Identities=15%  Similarity=0.196  Sum_probs=172.9

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|+|.+.+ ++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++
T Consensus        27 ~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~  105 (248)
T 1iru_D           27 KKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVE  105 (248)
T ss_dssp             HTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred             HcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence            57999999999999999999999987 56678899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCC--C
Q psy1779          84 TFAAIASWELYAR--KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL--S  158 (204)
Q Consensus        84 ~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~m--s  158 (204)
                      .++++++++++..  +. .|||++++||||||+ +++|+||++||+|++. +++++|+|+|++.++++||+.|+++|  |
T Consensus       106 ~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~-~~~~~aiG~gs~~a~~~Le~~~~~~m~~s  183 (248)
T 1iru_D          106 YITRYIASLKQRYTQSNGRRPFGISALIVGFDF-DGTPRLYQTDPSGTYH-AWKANAIGRGAKSVREFLEKNYTDEAIET  183 (248)
T ss_dssp             HHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECS-SSCEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHTTTCCSSTTCS
T ss_pred             HHHHHHHHHHHHHhccCCcccccEEEEEEEEeC-CCCcEEEEEcCCCcEE-EeeEEEECCCcHHHHHHHHHhhcccccCC
Confidence            9999999999654  32 289999999999996 5799999999999999 69999999999999999999999999  9


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCc
Q psy1779         159 PEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK  193 (204)
Q Consensus       159 ~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g  193 (204)
                      ++||++++++||..+.+   .++++++|++|+++|
T Consensus       184 ~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g  215 (248)
T 1iru_D          184 DDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQ  215 (248)
T ss_dssp             HHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSS
T ss_pred             HHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCC
Confidence            99999999999999987   468999999999998

>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*

Probab=100.00  E-value=4e-45  Score=301.12  Aligned_cols=193  Identities=15%  Similarity=0.190  Sum_probs=177.8

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|+|.+.|.++.+ +.+|||+|++||+|+++|+.+|++.|.++++.+++.|+++++++++++
T Consensus        32 ~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~  110 (288)
T 3nzj_F           32 ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIP  110 (288)
T ss_dssp             HTSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             hcCCcEEEEEECCEEEEEEcCCcccCCcccc-ccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHH
Confidence            5799999999999999999999999877654 779999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc--c-cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhcc---CCCCC
Q psy1779          84 TFAAIASWELYAR--K-LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESF---WQPGL  157 (204)
Q Consensus        84 ~la~~l~~~l~~~--r-~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~---~~~~m  157 (204)
                      .+++++++++|.+  + ..|||+|++||||||+  ++|+||++||+|++. +++++|+|+|++.++++||+.   |+++|
T Consensus       111 ~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~--~Gp~Ly~iDp~G~~~-~~~~~aiGsgs~~a~~~Lek~~~~~~~~m  187 (288)
T 3nzj_F          111 AFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK--NGAHLYMLEPSGSYW-GYKGAATGKGRQSAKAELEKLVDHHPEGL  187 (288)
T ss_dssp             HHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET--TEEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC--CCCEEEEECCCCCEE-EcCEEEEcCcHHHHHHHHHHhccccCCCC
Confidence            9999999999654  2 1289999999999996  779999999999999 699999999999999999999   99999


Q ss_pred             CHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcC--CceEEEEec
Q psy1779         158 SPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP--DKVTIRKIA  200 (204)
Q Consensus       158 s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~--~g~~~~~~~  200 (204)
                      |++||++++++||..+.+++..++.+++|++|++  ++..++.+|
T Consensus       188 s~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp  232 (288)
T 3nzj_F          188 SAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVK  232 (288)
T ss_dssp             CHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECC
T ss_pred             CHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECC
Confidence            9999999999999999999988888999999999  444445544

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H

Probab=100.00  E-value=3.3e-45  Score=302.14  Aligned_cols=195  Identities=17%  Similarity=0.167  Sum_probs=160.8

Q ss_pred             CCCCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCC
Q psy1779           1 MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPI   80 (204)
Q Consensus         1 ~~~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~   80 (204)
                      |+.++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|++|++++++|..+|++.|.++++.+++.|++.+++++
T Consensus        52 ~~v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i  131 (291)
T 2jay_A           52 AQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPL  131 (291)
T ss_dssp             ------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             ccccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCC
Confidence            34678999999999999999999999999888889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhccc--CCCceeeEEEEEEeCCCCc-----eEEEEEcCCCCee-eecceEEEccchhhHHHhhhcc
Q psy1779          81 SPDTFAAIASWELYARKL--TSPLFINPIIAGFYPDSGE-----VFLSTLDMAGCET-RKTDFVAGGSAQNMIMGIGESF  152 (204)
Q Consensus        81 ~~~~la~~l~~~l~~~r~--~~P~~v~~lvaG~d~~~~~-----p~Ly~id~~G~~~-~~~~~~a~G~g~~~~~~~Le~~  152 (204)
                      +++.+++.+++++|.++.  .|||+|++||||||+ +++     |+||++||+|+++ ++++|+|+|+|+++++++||+.
T Consensus       132 ~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~-~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~  210 (291)
T 2jay_A          132 TFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDI-HASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKL  210 (291)
T ss_dssp             CHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECT-TCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeC-CCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHh
Confidence            999999999999988642  279999999999997 555     9999999999987 4589999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhccccCCC-------EEEEEEcCCceEE
Q psy1779         153 WQPGLSPEQLFEVCSQVVIQACERDTKSGWG-------ATVYVVEPDKVTI  196 (204)
Q Consensus       153 ~~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~-------~~v~~i~~~g~~~  196 (204)
                      |+++||++||++++++||..+.++|..+++.       ++|++|+++|++.
T Consensus       211 ~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg~~~  261 (291)
T 2jay_A          211 YSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVD  261 (291)
T ss_dssp             GGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTEEEE
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCCeEE
Confidence            9999999999999999999999999887643       1699999998654

>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...

Probab=100.00  E-value=6.8e-45  Score=292.30  Aligned_cols=183  Identities=14%  Similarity=0.129  Sum_probs=170.7

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|+|.+.+..   .+.+||++|++|+++++||..+|++.|.++++.+++.|+++++++++++
T Consensus        29 ~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~  105 (233)
T 1ryp_F           29 KQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVE  105 (233)
T ss_dssp             HTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence            4799999999999999999999988743   4789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh--ccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCC--CC-
Q psy1779          84 TFAAIASWELYA--RKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP--GL-  157 (204)
Q Consensus        84 ~la~~l~~~l~~--~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--~m-  157 (204)
                      .++++++++++.  ++. .|||++++||||||+  ++|+||++||+|++. +++++|+|+|++.++++||+.|++  +| 
T Consensus       106 ~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~--~gp~Ly~idp~G~~~-~~~~~aiG~gs~~a~~~Le~~~~~~~~m~  182 (233)
T 1ryp_F          106 RAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK--SGAHLLEFQPSGNVT-ELYGTAIGARSQGAKTYLERTLDTFIKID  182 (233)
T ss_dssp             HHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET--TEEEEEEECTTSCEE-EESEEEESTTHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC--CcCEEEEECCCCCee-eeeEEEECCCcHHHHHHHHHHhccccccC
Confidence            999999999954  332 389999999999996  789999999999999 699999999999999999999998  99 


Q ss_pred             -CHHHHHHHHHHHHHHHHhhc-cccCCCEEEEEEcCCc
Q psy1779         158 -SPEQLFEVCSQVVIQACERD-TKSGWGATVYVVEPDK  193 (204)
Q Consensus       158 -s~~ea~~~~~~~l~~~~~~d-~~~~~~~~v~~i~~~g  193 (204)
                       |++||+++++++|..+. +| ..++++++|++|++++
T Consensus       183 ~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~  219 (233)
T 1ryp_F          183 GNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDT  219 (233)
T ss_dssp             SCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTE
T ss_pred             CCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCC
Confidence             99999999999999999 77 5789999999999994

>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*

Probab=100.00  E-value=2.3e-44  Score=291.42  Aligned_cols=186  Identities=15%  Similarity=0.097  Sum_probs=172.9

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|+|.+.+ ++..++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++
T Consensus        32 ~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~  110 (246)
T 1j2p_A           32 KRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVK  110 (246)
T ss_dssp             HTSCCEEEEEETTEEEEEEECCCSCT-TBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred             HcCCcEEEEEECCEEEEEEeccCCcc-ccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            57999999999999999999999986 45578899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH--hccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHH
Q psy1779          84 TFAAIASWELY--ARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPE  160 (204)
Q Consensus        84 ~la~~l~~~l~--~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~  160 (204)
                      .++++++++++  +++. .|||++++||||||   ++|+||.+||+|++. +++++|+|+|++.++++||+.|+++||++
T Consensus       111 ~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D---~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~ms~e  186 (246)
T 1j2p_A          111 ELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN---EVPKLYETDPSGALL-EYKATAIGMGRMAVTEFFEKEYRDDLSFD  186 (246)
T ss_dssp             HHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES---SSEEEEEECTTCCEE-EBSEEEESTTHHHHHHHHHHHCCTTCCHH
T ss_pred             HHHHHHHHHHHHHhcccCcccccEEEEEEEEC---CCCEEEEECCCceEE-eeeEEEECCCcHHHHHHHHHHhccCCCHH
Confidence            99999999994  4443 28999999999998   689999999999999 69999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCEEEEEEc-CC-ceE
Q psy1779         161 QLFEVCSQVVIQACERDTKSGWGATVYVVE-PD-KVT  195 (204)
Q Consensus       161 ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~-~~-g~~  195 (204)
                      ||++++++||..+.++ ..++++++|++|+ ++ |.+
T Consensus       187 ea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~  222 (246)
T 1j2p_A          187 DAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFK  222 (246)
T ss_dssp             HHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCE
T ss_pred             HHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceE
Confidence            9999999999999998 7889999999999 64 443

>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D

Probab=100.00  E-value=2.2e-44  Score=291.15  Aligned_cols=187  Identities=11%  Similarity=0.106  Sum_probs=165.0

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcC-CCCCH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQ-SPISP   82 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~~   82 (204)
                      ++|+|+|||+++||||||+|+|        +++.+|||+|++|++|+++|+.+|++.|.+.++.+++.|++.++ +++++
T Consensus        25 ~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v   96 (248)
T 3mi0_A           25 ARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTG   96 (248)
T ss_dssp             HTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCH
T ss_pred             hCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCH
Confidence            5799999999999999999998        34789999999999999999999999999999999999999999 89999


Q ss_pred             HHHHHHHHHHH---HhcccCCCceeeEEEEEEeC--CCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCC
Q psy1779          83 DTFAAIASWEL---YARKLTSPLFINPIIAGFYP--DSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL  157 (204)
Q Consensus        83 ~~la~~l~~~l---~~~r~~~P~~v~~lvaG~d~--~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~m  157 (204)
                      +.+++++++.+   |+++. |||+|++||||||+  ++++|+||++||+|++..+++++|+|+|++.++++||+.|+++|
T Consensus        97 ~~la~~l~~~l~q~yt~~~-rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~~m  175 (248)
T 3mi0_A           97 RQLANVYAQTLGTIFTEQA-KPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENA  175 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHSS-SCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHHHHHHhccCC-CCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcCCCC
Confidence            99999999553   55544 89999999999995  23799999999999999229999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHH-------hhccccCCCEEEEEEcCCc--eEEEEec
Q psy1779         158 SPEQLFEVCSQVVIQAC-------ERDTKSGWGATVYVVEPDK--VTIRKIA  200 (204)
Q Consensus       158 s~~ea~~~~~~~l~~~~-------~~d~~~~~~~~v~~i~~~g--~~~~~~~  200 (204)
                      |++||++++++||..+.       +++ .++.+++|++|+++|  .+++.++
T Consensus       176 t~eeai~la~~aL~~~~~~~~~~~~~~-~~~~~iev~vv~~~g~~~~f~~l~  226 (248)
T 3mi0_A          176 SLTDALRIAVAALRAGSADTSGGDQPT-LGVASLEVAVLDANRPRRAFRRIT  226 (248)
T ss_dssp             CHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTSSSCCEEECC
T ss_pred             CHHHHHHHHHHHHHHHHhhcccCcccc-cCCCcEEEEEEECCCCcccEEECC
Confidence            99999999999999999       565 678999999999997  3445443

>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E

Probab=100.00  E-value=1.2e-44  Score=295.57  Aligned_cols=184  Identities=12%  Similarity=0.064  Sum_probs=172.4

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|+|.+.+.   .++.+|||+|++|++++++|..+|++.|.++++.+++.|+++++++++++
T Consensus        30 ~~Gtt~vgi~~~dgVVlaaD~r~~~gl---~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v~  106 (263)
T 1iru_F           30 KQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVS  106 (263)
T ss_dssp             HHSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             HcCCcEEEEEeCCEEEEEEeccccccc---ccchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence            469999999999999999999999874   24789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc--c-cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCC--CCC
Q psy1779          84 TFAAIASWELYAR--K-LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP--GLS  158 (204)
Q Consensus        84 ~la~~l~~~l~~~--r-~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~--~ms  158 (204)
                      .+++++++++|..  + ..|||+|++||||||+  ++|+||++||+|++. +++++|+|+|++.++++||+.|++  +||
T Consensus       107 ~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~--~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~~~ms  183 (263)
T 1iru_F          107 RLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD--MGPHIFQTCPSANYF-DCRAMSIGARSQSARTYLERHMSEFMECN  183 (263)
T ss_dssp             HHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET--TEEEEEEECSSSCEE-EESEEEESTTHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhhcccccccceEEEEEEEEcC--CCCEEEEECCCCCEE-EeeEEEcCcccHHHHHHHHHHhcccCCCC
Confidence            9999999999743  2 2389999999999996  789999999999999 699999999999999999999998  999


Q ss_pred             HHHHHHHHHHHHHHHHhhc-cccCCCEEEEEEcCCc
Q psy1779         159 PEQLFEVCSQVVIQACERD-TKSGWGATVYVVEPDK  193 (204)
Q Consensus       159 ~~ea~~~~~~~l~~~~~~d-~~~~~~~~v~~i~~~g  193 (204)
                      ++||++++++||..+.++| ..++++++|++|++++
T Consensus       184 ~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~  219 (263)
T 1iru_F          184 LNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDL  219 (263)
T ss_dssp             HHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTE
T ss_pred             HHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCC
Confidence            9999999999999999999 4789999999999995

>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...

Probab=100.00  E-value=4.5e-44  Score=290.33  Aligned_cols=185  Identities=14%  Similarity=0.144  Sum_probs=172.5

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHh-hHHhcCCCCCH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTAN-YVASEQSPISP   82 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~-~~~~~~~~~~~   82 (204)
                      ++|+|+|||+++||||||+|+|.+ +.++..++.+||++|++|+++++||..+|++.|.++++.+++. |+..++.++++
T Consensus        29 ~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~  107 (250)
T 1ryp_B           29 KQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPT  107 (250)
T ss_dssp             HTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCCH
T ss_pred             HcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            579999999999999999999997 7788888999999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHHHHHHHHhc----ccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCC
Q psy1779          83 DTFAAIASWELYAR----KLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLS  158 (204)
Q Consensus        83 ~~la~~l~~~l~~~----r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms  158 (204)
                      +.+++.++++++..    +. |||++++||||||+ +++|+||++||+|++. +++++|+|+|++.++++||+.|+++||
T Consensus       108 ~~l~~~~a~~~~~~~~~~~~-rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~-~~~~~aiGsgs~~a~~~Le~~~~~~ms  184 (250)
T 1ryp_B          108 KLLVSEVAKIMQEATQSGGV-RPFGVSLLIAGHDE-FNGFSLYQVDPSGSYF-PWKATAIGKGSVAAKTFLEKRWNDELE  184 (250)
T ss_dssp             HHHHHHHHHHHHHTTTSBTB-CCCCEEEEEEEEET-TTEEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHHHHHHHHhcCCc-ccceEEEEEEEEcC-CCCcEEEEECCCCCEE-eeceeEecCccHHHHHHHHHHhccCCC
Confidence            99988888887442    23 89999999999997 6799999999999999 699999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCc
Q psy1779         159 PEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK  193 (204)
Q Consensus       159 ~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g  193 (204)
                      ++||++++++||..+.+++ .++++++|++|++++
T Consensus       185 ~eea~~la~~al~~~~~~~-~sg~~i~v~vi~~~~  218 (250)
T 1ryp_B          185 LEDAIHIALLTLKESVEGE-FNGDTIELAIIGDEN  218 (250)
T ss_dssp             HHHHHHHHHHHHHHHCCSC-CSTTTEEEEEECSCC
T ss_pred             HHHHHHHHHHHHHHHhccc-cCCCCEEEEEEEccc
Confidence            9999999999999999986 579999999999973

>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A

Probab=100.00  E-value=2.4e-43  Score=287.24  Aligned_cols=180  Identities=13%  Similarity=0.120  Sum_probs=163.8

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcC-CCCCH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQ-SPISP   82 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~~   82 (204)
                      ++|+|+|||+++||||||+|+|        +++.+|||+|++||+++++|..+|++.|.++++.+++.|.+.++ +++++
T Consensus        25 ~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v   96 (259)
T 1q5q_A           25 ARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTG   96 (259)
T ss_dssp             HTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCH
T ss_pred             hcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCCH
Confidence            5799999999999999999998        35789999999999999999999999999999999999998887 59999


Q ss_pred             HHHHHHHHHHH---HhcccCCCceeeEEEEEEe--CCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCC
Q psy1779          83 DTFAAIASWEL---YARKLTSPLFINPIIAGFY--PDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL  157 (204)
Q Consensus        83 ~~la~~l~~~l---~~~r~~~P~~v~~lvaG~d--~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~m  157 (204)
                      +.+++++++++   |+.+. |||+|++||||||  +++++|+||++||+|++.++++++|+|++++.++++||+.|+++|
T Consensus        97 ~~la~~l~~~l~q~yt~~~-rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~m  175 (259)
T 1q5q_A           97 RSLANAYAQTLGTIFTEQP-KPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADL  175 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHSS-SCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHHHHHHhccCC-CCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhccCCC
Confidence            99999999963   66555 8999999999999  213789999999999999558999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHH-----hhccccCCCEEEEEEcCCc
Q psy1779         158 SPEQLFEVCSQVVIQAC-----ERDTKSGWGATVYVVEPDK  193 (204)
Q Consensus       158 s~~ea~~~~~~~l~~~~-----~~d~~~~~~~~v~~i~~~g  193 (204)
                      |++||++++++||..+.     +||. ++++++|++|+++|
T Consensus       176 s~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~  215 (259)
T 1q5q_A          176 DLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSR  215 (259)
T ss_dssp             CHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTS
T ss_pred             CHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCC
Confidence            99999999999999999     8998 89999999999995

>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A

Probab=100.00  E-value=3.6e-39  Score=249.46  Aligned_cols=173  Identities=17%  Similarity=0.107  Sum_probs=153.2

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCce-eeecCCCeEEEe-eCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCC
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDF-TIAEYENKVHQM-SPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPI   80 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~   80 (204)
                      +.+|+|+|||+++||||||+|+|.+.|.+ +.+++.+|||+| ++|++++++|..+|++.|.++++.+++.|+   +  .
T Consensus         2 ~~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~   76 (180)
T 2z3b_A            2 SFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--N   76 (180)
T ss_dssp             CBCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--C
T ss_pred             CCCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--C
Confidence            57899999999999999999999999888 999999999999 999999999999999999999999999987   3  2


Q ss_pred             CHHHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeee-cceEEEccchhhHHHhhhccCCC---C
Q psy1779          81 SPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRK-TDFVAGGSAQNMIMGIGESFWQP---G  156 (204)
Q Consensus        81 ~~~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~-~~~~a~G~g~~~~~~~Le~~~~~---~  156 (204)
                      .+..++ .+++.+++.+..|||++++|+|  |    +|+||++||+|++.+. +++.|+|+|+++++++||+.|++   +
T Consensus        77 ~~~~~~-~l~~~~~~~~~~rp~~~~~lva--d----~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~  149 (180)
T 2z3b_A           77 LKRAAV-ELAKEWRSDKVLRKLEAMLIVM--N----QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGES  149 (180)
T ss_dssp             HHHHHH-HHHHHHHHCTTGGGCCCCEEEE--C----SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGG
T ss_pred             hHHHHH-HHHHHHHhhhCcCcceEEEEEE--c----CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCC
Confidence            333443 4566665555448999999999  4    5899999999999832 59999999999999999999998   9


Q ss_pred             CCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEc
Q psy1779         157 LSPEQLFEVCSQVVIQACERDTKSGWGATVYVVE  190 (204)
Q Consensus       157 ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~  190 (204)
                      ||.||   ++.+||+.+.+||..++++++|.+|+
T Consensus       150 mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i~  180 (180)
T 2z3b_A          150 MSASE---IARAALETAGEICVYTNDQIILEELE  180 (180)
T ss_dssp             CCHHH---HHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred             CCHHH---HHHHHHHHHHHhcCccCCeEEEEEEC
Confidence            99999   46799999999999999999999983

>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A

Probab=100.00  E-value=3.3e-38  Score=242.84  Aligned_cols=168  Identities=14%  Similarity=0.082  Sum_probs=152.9

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEe-eCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQM-SPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF   85 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   85 (204)
                      +|+|||+++||||||+|+|.+.|.++.+++.+|||+| ++|++++++|..+|++.|.++++.+++.|+.      ++...
T Consensus         1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~   74 (174)
T 1g3k_A            1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS   74 (174)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred             CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence            6899999999999999999999989999999999999 9999999999999999999999999998875      45666


Q ss_pred             HHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecc---eEEEccchhhHHHhhhccCC-CCCCHHH
Q psy1779          86 AAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTD---FVAGGSAQNMIMGIGESFWQ-PGLSPEQ  161 (204)
Q Consensus        86 a~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~---~~a~G~g~~~~~~~Le~~~~-~~ms~~e  161 (204)
                      +..+++.++++|..||+  +++++|+|    +|+||++||+|++. +++   +.|+|+|+++++++||+.|+ ++||.+ 
T Consensus        75 ~~~l~~~~~~~~~~r~~--~~~l~g~d----~p~Ly~~d~~G~~~-~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~-  146 (174)
T 1g3k_A           75 AVELAKDWRTDRALRKL--EAMLIVAD----EKESLIITGIGDVV-QPEEDQILAIGSGGNYALSAARALVENTELSAH-  146 (174)
T ss_dssp             HHHHHHHHHHSTTGGGC--CCEEEEEC----SSCEEEEETTTEEE-CCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH-
T ss_pred             HHHHHHHHHhccCcCcc--eEEEEEEC----CCEEEEEcCCCcEE-ecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH-
Confidence            77788888877664675  56788887    59999999999999 677   99999999999999999999 999955 


Q ss_pred             HHHHHHHHHHHHHhhccccCCCEEEEEEc
Q psy1779         162 LFEVCSQVVIQACERDTKSGWGATVYVVE  190 (204)
Q Consensus       162 a~~~~~~~l~~~~~~d~~~~~~~~v~~i~  190 (204)
                        +++.+||+.+.+||..++++++|++|+
T Consensus       147 --~l~~~al~~a~~rd~~sg~~i~v~~i~  173 (174)
T 1g3k_A          147 --EIVEKSLRIAGDICVFTNTNFTIEELP  173 (174)
T ss_dssp             --HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred             --HHHHHHHHHHHHhccccCCceEEEEec
Confidence              799999999999999999999999986

>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4

Probab=100.00  E-value=2.6e-38  Score=242.72  Aligned_cols=167  Identities=14%  Similarity=0.139  Sum_probs=151.0

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEe-eCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQM-SPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF   85 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   85 (204)
                      ||+|||+++||||||+|+|.+.|.++.+++.+|||+| ++|++++++|..+|++.|.++++.+++.|+.+     .++.+
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~   75 (171)
T 1m4y_A            1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA   75 (171)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence            6899999999999999999999999999999999999 99999999999999999999999999988754     26667


Q ss_pred             HHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecc--eEEEccchhhHHHhhhccCC-CCCCHHHH
Q psy1779          86 AAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTD--FVAGGSAQNMIMGIGESFWQ-PGLSPEQL  162 (204)
Q Consensus        86 a~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~--~~a~G~g~~~~~~~Le~~~~-~~ms~~ea  162 (204)
                      +++.+ .+++++..+||++++|+|  |    +|+||++||+|++. +++  +.|+|+|+++++++||+.|+ ++||.   
T Consensus        76 ~~l~~-~~~~~~~~~~~~~~~lv~--D----~p~Ly~~d~~G~~~-~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~---  144 (171)
T 1m4y_A           76 VELAK-DWRTDRVLRRLEALLLVA--D----KENIFIISGNGEVI-QPDDDAAAIGSGGPYALAAAKALLRNTDLSA---  144 (171)
T ss_dssp             HHHHH-HHHHCTTGGGCCCEEEEE--C----SSCEEEECTTSCEE-CCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---
T ss_pred             HHHHH-HHHHhCCCCceEEEEEEE--c----CCEEEEECCCCCEE-ecCCCEEEECCcHHHHHHHHHHhcccCCCCH---
Confidence            66654 667766547899999988  4    69999999999999 677  99999999999999999999 99996   


Q ss_pred             HHHHHHHHHHHHhhccccCCCEEEEEE
Q psy1779         163 FEVCSQVVIQACERDTKSGWGATVYVV  189 (204)
Q Consensus       163 ~~~~~~~l~~~~~~d~~~~~~~~v~~i  189 (204)
                      .+++.+||+.+.+||..++++++|+++
T Consensus       145 ~~l~~~al~~a~~rd~~sg~~i~v~~~  171 (171)
T 1m4y_A          145 REIVEKAMTIAGEICIYTNQNIVIEEV  171 (171)
T ss_dssp             HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred             HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence            678999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	204
d1iruj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	8e-35
d1rypj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	2e-32
d1ryp1_	222	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	7e-27
d1iru1_	213	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	3e-25
d1iruh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	4e-25
d1rypk_	198	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	4e-25
d1j2qh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	3e-24
d1ryph_	205	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	1e-22
d1irul_	201	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	2e-22
d1rypl_	212	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	6e-22
d1iruk_	199	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	2e-21
d1yarh1	203	d.153.1.4 (H:1-203) Proteasome beta subunit (catal	4e-21
d1ryp2_	233	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	5e-21
d1rypi_	222	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	9e-21
d1iru2_	217	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	1e-20
d1q5qh_	224	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	2e-20
d1irui_	220	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	7e-20
d1rypf_	233	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	3e-17
d1rypc_	244	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	3e-16
d1irue_	234	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	4e-16
d1iruc_	250	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	8e-16
d1irug_	245	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	4e-15
d1j2pa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	2e-14
d1rypd_	241	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	7e-14
d1rypb_	250	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	4e-13
d1irub_	233	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	5e-13
d1rype_	242	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	8e-13
d1rypa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	9e-13
d1yara1	221	d.153.1.4 (A:13-233) Proteasome alpha subunit (non	1e-12
d1iruf_	238	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	1e-10
d1q5qa_	227	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	3e-10
d1irua_	244	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	3e-09
d1irud_	243	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	8e-09
d1m4ya_	171	d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga ma	7e-08
d2z3ba1	180	d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus	7e-06
d1g3ka_	173	d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus i	0.004

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  120 bits (301), Expect = 8e-35
 Identities = 72/204 (35%), Positives = 106/204 (51%), Gaps = 2/204 (0%)

Query: 1   MSLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQ 60
           MS N GGA++AM GKNC AI  D         +     K+  M   LY+   GL  D   
Sbjct: 3   MSYN-GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQT 61

Query: 61  FAEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
            A+++  R   Y   E   I P T  ++ +  LY ++   P +  P+IAG  P + + F+
Sbjct: 62  VAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFG-PYYTEPVIAGLDPKTFKPFI 120

Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
            +LD+ GC     DFV  G+    + G+ ES W+P + P+ LFE  SQ ++ A +RD  S
Sbjct: 121 CSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVS 180

Query: 181 GWGATVYVVEPDKVTIRKIATRMD 204
           G G  V+++E DK+T R +  RMD
Sbjct: 181 GMGVIVHIIEKDKITTRTLKARMD 204

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (285), Expect = 2e-32
 Identities = 74/203 (36%), Positives = 109/203 (53%), Gaps = 3/203 (1%)

Query: 2   SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQF 61
           S+N GG +VAM GK+C AI  D  L      ++    K+     H++L   GL  D    
Sbjct: 5   SIN-GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTL 62

Query: 62  AEKMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
            E    +T  Y   E+  I P+TF  + S  LY R+   P F+ P++AG    SG+ F++
Sbjct: 63  NEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFG-PYFVGPVVAGINSKSGKPFIA 121

Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
             D+ GC     DF+  G+A + + G+ ES ++P L PE LFE  SQ ++ A +RD  SG
Sbjct: 122 GFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSG 181

Query: 182 WGATVYVVEPDKVTIRKIATRMD 204
           WGA VY+++ D+V  R +  R D
Sbjct: 182 WGAVVYIIKKDEVVKRYLKMRQD 204

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (249), Expect = 7e-27
 Identities = 46/218 (21%), Positives = 80/218 (36%), Gaps = 19/218 (8%)

Query: 4   NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
           ++GG I+ +AG++   +  D   +      + YE KV     ++ +   G  ADG    +
Sbjct: 7   DNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVK 66

Query: 64  KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
           +       Y             AA     L   K   P +++ IIAG   D G+  + + 
Sbjct: 67  RFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDED-GKGAVYSF 125

Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFW-----------------QPGLSPEQLFEVC 166
           D  G    +    AGG+A ++IM   ++                      LS E++ ++ 
Sbjct: 126 DPVGS-YEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLV 184

Query: 167 SQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
                 A ER  + G G  + +V  D V       + D
Sbjct: 185 RDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 222

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 95.7 bits (237), Expect = 3e-25
 Identities = 45/210 (21%), Positives = 84/210 (40%), Gaps = 12/210 (5%)

Query: 4   NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
            +GG I+A+AG++   +  D  L +G         K ++++    +   G   D +   +
Sbjct: 7   FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 66

Query: 64  KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
            +  R   Y  S    ++    AA+ S  LY+R+   P ++  II G   +      S  
Sbjct: 67  IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRF-FPYYVYNIIGGLDEEGKGAVYS-- 123

Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGE---------SFWQPGLSPEQLFEVCSQVVIQAC 174
                  ++  F AGGSA  M+  + +         +     LS ++   +   V I A 
Sbjct: 124 FDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAA 183

Query: 175 ERDTKSGWGATVYVVEPDKVTIRKIATRMD 204
           ERD  +G    + +V  + +    ++ R D
Sbjct: 184 ERDVYTGDALRICIVTKEGIREETVSLRKD 213

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 95.2 bits (236), Expect = 4e-25
 Identities = 40/191 (20%), Positives = 76/191 (39%), Gaps = 4/191 (2%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
           I+A+       +G D     G +      +K+  +   ++    G  AD    A+ +T +
Sbjct: 3   IMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQ 62

Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
              +      P    T A++     Y  +    L    IIAG+ P  G   + ++ M G 
Sbjct: 63  LGFHSIELNEPPLVHTAASLFKEMCYRYR--EDLMAGIIIAGWDPQEGG-QVYSVPMGGM 119

Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
             R+  F  GGS  + I G  ++ ++ G++ E+  +  +  +  A ERD  SG    +  
Sbjct: 120 MVRQ-SFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRLAA 178

Query: 189 VEPDKVTIRKI 199
           +    V  + +
Sbjct: 179 IAESGVERQVL 189

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 198

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 94.8 bits (235), Expect = 4e-25
 Identities = 36/188 (19%), Positives = 78/188 (41%), Gaps = 2/188 (1%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
           I+ +  ++   +     + +G   + + ++K  Q+SPH  +   G   D +QFAE +   
Sbjct: 4   ILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQAN 63

Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLT-SPLFINPIIAGFYPDSGEVFLSTLDMAG 127
              Y   E   +SP   ++    EL     +  P  +N +I G+     +  L  +D  G
Sbjct: 64  IQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLG 123

Query: 128 CETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVY 187
            +  +  + A G +      + +  ++P ++ E+  ++    V +  +R      G  V 
Sbjct: 124 TKV-ELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVK 182

Query: 188 VVEPDKVT 195
           +V+ D + 
Sbjct: 183 IVDKDGIR 190

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 92.6 bits (229), Expect = 3e-24
 Identities = 36/188 (19%), Positives = 72/188 (38%), Gaps = 3/188 (1%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
            V +  K+   +  +     G+F  ++   K++Q++  + +   G   D    A  + + 
Sbjct: 3   TVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIE 62

Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
              Y    +   +    A +    L       P  +  +I G   DS    + ++D  G 
Sbjct: 63  ANLYEIRRERKPTVRAIATLT-SNLLNSYRYFPYLVQLLIGGI--DSEGKSIYSIDPIGG 119

Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
              + D VA GS      G+ E  + P +  ++  E+  + +  A +RD+ SG G  V  
Sbjct: 120 AIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVK 179

Query: 189 VEPDKVTI 196
           +  D+   
Sbjct: 180 ITEDEFYQ 187

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.6 bits (219), Expect = 1e-22
 Identities = 37/194 (19%), Positives = 72/194 (37%), Gaps = 5/194 (2%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
           G +I+A+  K+   +G D     G +      +K+ ++   ++    G  AD    A+ +
Sbjct: 9   GASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIV 68

Query: 66  TLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDM 125
                 Y +   +P +  T A++     Y  K    L    I+AG+   +     +   +
Sbjct: 69  QYHLELYTSQYGTPSTE-TAASVFKELCYENK--DNLTAGIIVAGYDDKNKGEVYTI-PL 124

Query: 126 AGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGAT 185
            G    K  +   GS    I G  +  ++  +S E+  +     + QA + D  SG    
Sbjct: 125 GGS-VHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIR 183

Query: 186 VYVVEPDKVTIRKI 199
           + V+    V     
Sbjct: 184 MVVLTAAGVERLIF 197

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.9 bits (217), Expect = 2e-22
 Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 4/188 (2%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
            +A   ++   +  D     G +  ++   KV +++P+L     G  AD   +   +  +
Sbjct: 3   TLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQ 62

Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
              Y    +  IS    + + +  +Y  K    L +  +I G+  D     L  +D  G 
Sbjct: 63  CRIYELRNKERISVAAASKLLANMVYQYK-GMGLSMGTMICGW--DKRGPGLYYVDSEGN 119

Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
                 F + GS      G+ +  +   L  EQ +++  + + QA  RD  SG    +Y 
Sbjct: 120 RISGATF-SVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYH 178

Query: 189 VEPDKVTI 196
           V  D    
Sbjct: 179 VREDGWIR 186

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 86.7 bits (214), Expect = 6e-22
 Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 3/188 (1%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
            +A   +    + VD     G++  ++   +V +++P L     G  AD   +   +  +
Sbjct: 3   TLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQ 62

Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
              +   E+  IS    A+     L  +   + L +  +I G+    G       D  G 
Sbjct: 63  CRLHELREKERISVA-AASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYV-DSDGT 120

Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
             +  D    GS Q    G+ +S ++  LS E    +  + ++ A  RD  SG    +Y 
Sbjct: 121 RLKG-DIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYH 179

Query: 189 VEPDKVTI 196
           V  D    
Sbjct: 180 VTEDGWIY 187

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 199

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.7 bits (211), Expect = 2e-21
 Identities = 33/189 (17%), Positives = 75/189 (39%), Gaps = 3/189 (1%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
           ++ + G +   +  D +       + +  +K+ +MS  + L+  G   D +QFAE +   
Sbjct: 4   LIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKN 63

Query: 69  TANYVASEQSPISPDTFAA-IASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAG 127
              Y       +SP   A           +  +P  +N ++AG+    G        +A 
Sbjct: 64  VQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAA 123

Query: 128 CETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVY 187
               K  F A G    + + I + ++ P +S E+  E+  + + +  +R   +    +V 
Sbjct: 124 LA--KAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVR 181

Query: 188 VVEPDKVTI 196
           +++ + +  
Sbjct: 182 IIDKNGIHD 190

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 203

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 84.5 bits (208), Expect = 4e-21
 Identities = 30/200 (15%), Positives = 74/200 (37%), Gaps = 9/200 (4%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
            V +  K+   +  +  +   +F + +   K+ Q+  +  +   GL  D       M   
Sbjct: 3   TVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAE 62

Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
              Y    +  +  +  A +    +  +    P  +  ++ G   D+     S     G 
Sbjct: 63  LELYRLQRRVNMPIEAVATLL-SNMLNQVKYMPYMVQLLVGGI--DTAPHVFSIDAAGGS 119

Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
              +  + + GS    + G+ ES +   ++ ++  ++  + +  A +RD+ SG    V V
Sbjct: 120 V--EDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAV 177

Query: 189 VEPD----KVTIRKIATRMD 204
           +       ++   +I +R+ 
Sbjct: 178 ITRKDGYVQLPTDQIESRIR 197

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.8 bits (209), Expect = 5e-21
 Identities = 28/198 (14%), Positives = 65/198 (32%), Gaps = 11/198 (5%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
           G ++++M   N   I  D+L   G         ++  +  +  +   G  +D       +
Sbjct: 8   GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLL 67

Query: 66  TLRTANY-----VASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
                       +A  +  + P       +  +Y R+       N II      +G+ FL
Sbjct: 68  KDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFL 127

Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFW-----QPGLSPEQLFEVCSQVVIQACE 175
             +++    T  +  +A G   +M   +           P  + +   E     +     
Sbjct: 128 RYVNL-LGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYY 186

Query: 176 RDTKSGWGATVYVVEPDK 193
           RD +S    ++ +++ + 
Sbjct: 187 RDARSSRNFSLAIIDKNT 204

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.1 bits (207), Expect = 9e-21
 Identities = 38/185 (20%), Positives = 68/185 (36%), Gaps = 5/185 (2%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
           IV +   N   I  D    QG     +   K+H++SP ++    G  AD     + +   
Sbjct: 3   IVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSN 62

Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
              +           +   +    L+  +     ++  I+AG   D     L ++   G 
Sbjct: 63  IELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYL--IVAGV--DPTGSHLFSIHAHGS 118

Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
            T    +++ GS     M + ES W+  L+ E+  ++ S  +      D  SG    V V
Sbjct: 119 -TDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCV 177

Query: 189 VEPDK 193
           +E  K
Sbjct: 178 MEIGK 182

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.7 bits (206), Expect = 1e-20
 Identities = 34/196 (17%), Positives = 66/196 (33%), Gaps = 5/196 (2%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
           G +++ +  +    I  D L   G        +++ +++    L   G  AD     + +
Sbjct: 8   GTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVL 67

Query: 66  TLRTANYVASEQS-PISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
                +          SP    +  +  +Y+R+       N ++ G Y   GE FL  +D
Sbjct: 68  GQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGY-ADGESFLGYVD 126

Query: 125 MAGCETRKTDFVAGGSAQNMIMGI--GESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
           M      +   +A G    +   +       QP LS  +  ++  + +     RD +S  
Sbjct: 127 M-LGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYN 185

Query: 183 GATVYVVEPDKVTIRK 198
                 V    V I  
Sbjct: 186 RFQTATVTEKGVEIEG 201

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 83.4 bits (205), Expect = 2e-20
 Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 9/198 (4%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
           IVA+  K    +  D    QG+   +    KV+    +      G     ++      + 
Sbjct: 3   IVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVE 62

Query: 69  TANYVASEQSPISPDTFAAIAS--WELYARKLTSPLFINPIIAGFYPDS------GEVFL 120
             +Y   E  P++ D  A   +             L + P++ G+  D+      G +  
Sbjct: 63  LEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVS 122

Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
             +     E R   + A GS         +  + P    E       + +  A + D+ +
Sbjct: 123 YDVVGGRYEER-AGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSAT 181

Query: 181 GWGATVYVVEPDKVTIRK 198
           G       + P  VTI +
Sbjct: 182 GGPDLTRGIYPTAVTITQ 199

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.7 bits (201), Expect = 7e-20
 Identities = 33/188 (17%), Positives = 69/188 (36%), Gaps = 5/188 (2%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
           I  +  K+   +G D    +G     +  +K+H +SP++Y    G  AD     + ++  
Sbjct: 3   IAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSN 62

Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
              +  S        T   +    L+  +    +    ++ G   D     L ++   G 
Sbjct: 63  LELHSLSTGRLPRVVTANRMLKQMLFRYR--GYIGAALVLGGV--DVTGPHLYSIYPHGS 118

Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYV 188
             +   +V  GS     M + E  ++P +  E+   + S+ +      D  SG    + V
Sbjct: 119 TDK-LPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCV 177

Query: 189 VEPDKVTI 196
           +  +K+  
Sbjct: 178 ISKNKLDF 185

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.1 bits (184), Expect = 3e-17
 Identities = 22/194 (11%), Positives = 61/194 (31%), Gaps = 7/194 (3%)

Query: 4   NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
             G   V +       +            ++ Y+ K+ +   H+ L   GL  D    + 
Sbjct: 29  KQGSVTVGLRSNTHAVLVALKRNADE---LSSYQKKIIKCDEHMGLSLAGLAPDARVLSN 85

Query: 64  KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTS---PLFINPIIAGFYPDSGEVFL 120
            +  +           ++ +    +   +      +    P  +  +I G+      +  
Sbjct: 86  YLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLE 145

Query: 121 STLDMAGCETRKTDFVAGG-SAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTK 179
                   E   T   A    A+  +    ++F +   +P++L +   + + Q+   ++ 
Sbjct: 146 FQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESL 205

Query: 180 SGWGATVYVVEPDK 193
           +    ++ +V  D 
Sbjct: 206 TVDNLSIAIVGKDT 219

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.0 bits (176), Expect = 3e-16
 Identities = 18/199 (9%), Positives = 56/199 (28%), Gaps = 5/199 (2%)

Query: 4   NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
           +  G  + +   +   +  +  +            K+++++  + +   GL AD      
Sbjct: 29  SHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILIN 88

Query: 64  KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTS---PLFINPIIAGFYPDSGEVFL 120
              +   NY+ +    I  +      S             P  ++ I AG+    G    
Sbjct: 89  TARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLY 148

Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
           ++         K   V   +  +    + +  ++  +  +   E+  + + +  +    +
Sbjct: 149 TSNPSGNYTGWKAISVGANT--SAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALT 206

Query: 181 GWGATVYVVEPDKVTIRKI 199
                   +          
Sbjct: 207 YDRLEFATIRKGANDGEVY 225

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 234

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.0 bits (176), Expect = 4e-16
 Identities = 27/196 (13%), Positives = 64/196 (32%), Gaps = 13/196 (6%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
           G   + +       + V+  +            K+ ++  H+     GL AD     +K 
Sbjct: 27  GSTAIGIQTSEGVCLAVEKRITSP-LMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 85

Query: 66  TLRTANYVASEQSPISPDTFAAIASWELYA--------RKLTSPLFINPIIAGFYPDSGE 117
            + T N+  +    ++ ++     S               ++ P  +  +  G   D   
Sbjct: 86  RVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGV--DEKG 143

Query: 118 VFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERD 177
             L  +D +G    + D  A GSA        +  +   ++ ++  +    ++ Q  E  
Sbjct: 144 PQLFHMDPSGTFV-QCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEK 202

Query: 178 TKSGWGATVYVVEPDK 193
             +     +  V+P +
Sbjct: 203 L-NATNIELATVQPGQ 217

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.3 bits (174), Expect = 8e-16
 Identities = 19/193 (9%), Positives = 61/193 (31%), Gaps = 4/193 (2%)

Query: 4   NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
              G  + +   +   +  +   +        +  K+++++  +     G+ +D      
Sbjct: 28  GHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTN 87

Query: 64  KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTS---PLFINPIIAGFYPDSGEVFL 120
           ++ L    Y+   Q PI  +           A        P  ++ +  G+    G   L
Sbjct: 88  ELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYG-FQL 146

Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
              D +G          G ++   +  + + + +  ++ +    +  +V+ +  +    S
Sbjct: 147 YQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLS 206

Query: 181 GWGATVYVVEPDK 193
                +  +  + 
Sbjct: 207 AEKVEIATLTREN 219

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 245

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.3 bits (169), Expect = 4e-15
 Identities = 25/199 (12%), Positives = 61/199 (30%), Gaps = 6/199 (3%)

Query: 4   NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
            +    + +  K+    GV+  LV           ++  +  H+ +   GL AD    A+
Sbjct: 31  ENSSTAIGIRCKDGVVFGVEK-LVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLAD 89

Query: 64  KMTLRTANYVASEQSPISPD---TFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
                 +N+ ++    I         A+            P   + ++   Y  +    L
Sbjct: 90  IAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGS-YSVNDGAQL 148

Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
             +D +G  +      A G A+       E      ++   + +  ++++    +     
Sbjct: 149 YMIDPSGV-SYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDK 207

Query: 181 GWGATVYVVEPDKVTIRKI 199
            +   +  V        +I
Sbjct: 208 AFELELSWVGELTNGRHEI 226

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 67.0 bits (163), Expect = 2e-14
 Identities = 28/199 (14%), Positives = 62/199 (31%), Gaps = 9/199 (4%)

Query: 4   NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
             G   + +  K    +  D  +        +   K++++  H+     GL AD     +
Sbjct: 29  KRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLID 87

Query: 64  KMTLRTANYVASEQSPISPD---TFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
           +  +       +   PI+             +        P  ++ +IAG         L
Sbjct: 88  RARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVP---KL 144

Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
              D +G    +    A G  +  +    E  ++  LS +    +    +  + E +   
Sbjct: 145 YETDPSGALL-EYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVP 203

Query: 181 GWGATVYVVEPDKVTIRKI 199
                V  V+ D  T +++
Sbjct: 204 E-NIEVGYVKVDDRTFKEV 221

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.8 bits (160), Expect = 7e-14
 Identities = 35/196 (17%), Positives = 70/196 (35%), Gaps = 10/196 (5%)

Query: 4   NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
             G   V + GKNC  +G +              +KV ++  H+ L   GL AD     E
Sbjct: 26  KRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIE 85

Query: 64  KMTLRTANYVASEQSPISPDTFAAIAS---WELYARKLTSPLFINPIIAGFYPDSGEVFL 120
           K  +   ++  + + P++ +      +             P  ++ +IAGF P   E  L
Sbjct: 86  KARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKL 145

Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP---GLSPEQLFEVCSQVVIQACERD 177
              + +G  +        G     +    E  +       + E+  ++  + +++  +  
Sbjct: 146 YQTEPSGIYSS-WSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQTG 204

Query: 178 TKSGWGATVYVVEPDK 193
            K      + VV+PD 
Sbjct: 205 AK---NIEITVVKPDS 217

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.0 bits (155), Expect = 4e-13
 Identities = 29/196 (14%), Positives = 60/196 (30%), Gaps = 8/196 (4%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
           G   + +   N   I  +         ++E  +KV  ++P +  +  G+  D     +K 
Sbjct: 31  GVTSLGIKATNGVVIATEKKSSSP-LAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKS 89

Query: 66  -TLRTANYVASEQSPISPDTFA---AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLS 121
             +   +Y                 A    E        P  ++ +IAG    +G   L 
Sbjct: 90  RKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNG-FSLY 148

Query: 122 TLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSG 181
            +D +G         A G          E  W   L  E    +    + ++ E +  +G
Sbjct: 149 QVDPSGS-YFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEF-NG 206

Query: 182 WGATVYVVEPDKVTIR 197
               + ++  +   + 
Sbjct: 207 DTIELAIIGDENPDLL 222

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.2 bits (153), Expect = 5e-13
 Identities = 26/192 (13%), Positives = 47/192 (24%), Gaps = 4/192 (2%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
           G   V +   N   +  +              +KV  ++ H+ L+  G+  D      + 
Sbjct: 31  GAPSVGIKAANGVVLATEKKQKSI-LYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRA 89

Query: 66  TLRTANYVASEQSPISPDTFAA-IASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLD 124
                 Y    Q PI        +AS      +          +     + G  +L   D
Sbjct: 90  RKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSD 149

Query: 125 MAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWGA 184
            +G         A G          E  +   L  E         + ++ E         
Sbjct: 150 PSGAYF-AWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTED-NI 207

Query: 185 TVYVVEPDKVTI 196
            V +        
Sbjct: 208 EVGICNEAGFRR 219

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 242

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.8 bits (152), Expect = 8e-13
 Identities = 29/197 (14%), Positives = 61/197 (30%), Gaps = 13/197 (6%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
           G   + +A K    +GV+          ++   K+ ++  H+     GL AD     E  
Sbjct: 26  GSTAIGIATKEGVVLGVEKRATSP-LLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHA 84

Query: 66  TLRTANYVASEQSPISPDTFAAIAS---------WELYARKLTSPLFINPIIAGFYPDSG 116
                 +       I+ ++                    R ++ P  +  +IAG   D  
Sbjct: 85  RTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADD- 143

Query: 117 EVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACER 176
              L   + +G    + +  A GS          + W   L+ ++   +  +++ Q  E 
Sbjct: 144 GYQLFHAEPSGTFY-RYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEE 202

Query: 177 DTKSGWGATVYVVEPDK 193
                  A +  +    
Sbjct: 203 K-LDENNAQLSCITKQD 218

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.8 bits (152), Expect = 9e-13
 Identities = 32/203 (15%), Positives = 57/203 (28%), Gaps = 14/203 (6%)

Query: 4   NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
                 +A+ GK+C  +      V          + +  +S  + ++  G   D    A 
Sbjct: 28  QTNINSLAVRGKDCTVVISQK-KVPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAAL 86

Query: 64  KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTS---PLFINPIIAGFYPDSGEVFL 120
           +     A +       +  D  A   +         +   PL +         + G   +
Sbjct: 87  RAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGP-SI 145

Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP-------EQLFEVCSQVVIQA 173
              D AG         A G  Q  I    E+ ++            E++ E     +I A
Sbjct: 146 YKTDPAGY-YVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDA 204

Query: 174 CERDTKSGWGATVYVVEPDKVTI 196
              +  S     V V   DK   
Sbjct: 205 LGTEF-SKNDLEVGVATKDKFFT 226

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 62.0 bits (150), Expect = 1e-12
 Identities = 27/194 (13%), Positives = 62/194 (31%), Gaps = 7/194 (3%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKM 65
           G   + M   N   +  D   V+          K+  +  ++  +  GL AD     +  
Sbjct: 22  GSTALGMKFANGVLLISDKK-VRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFA 80

Query: 66  TLRTANYVASEQSPISPDTFAAIASWELYARKLTS---PLFINPIIAGFYPDSGEVFLST 122
            +       +  S ++ +      + ++          P  ++ I AG         L  
Sbjct: 81  RISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQI--GPRLFD 138

Query: 123 LDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGW 182
            D AG    +    A GS ++ ++   E  ++  L  ++   +  + +  + E   +   
Sbjct: 139 CDPAGTIN-EYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKA 197

Query: 183 GATVYVVEPDKVTI 196
                +   +K  I
Sbjct: 198 PEIASITVGNKYRI 211

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 238

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.0 bits (137), Expect = 1e-10
 Identities = 24/196 (12%), Positives = 56/196 (28%), Gaps = 12/196 (6%)

Query: 4   NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
             G A V +  K    +            +A ++ K+  +  H+ +   GL AD      
Sbjct: 27  KQGSATVGLKSKTHAVLVALKRAQSE---LAAHQKKILHVDNHIGISIAGLTADARLLCN 83

Query: 64  KMTLRTANYVASEQSPISPD---TFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFL 120
            M     +       P+      +     +     R    P  +  +IAG+  D     +
Sbjct: 84  FMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGY--DDMGPHI 141

Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPG--LSPEQLFEVCSQVVIQACERDT 178
                +         ++ G+         E         +  +L +   + + +    + 
Sbjct: 142 FQTCPSAN-YFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQ 200

Query: 179 K-SGWGATVYVVEPDK 193
             +    ++ +V  D 
Sbjct: 201 DLTTKNVSIGIVGKDL 216

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 227

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 55.4 bits (133), Expect = 3e-10
 Identities = 19/199 (9%), Positives = 53/199 (26%), Gaps = 19/199 (9%)

Query: 3   LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFA 62
           +  G ++V +  ++      +          +   +KV ++   L     G   +     
Sbjct: 16  IARGRSVVVLTFRDGVLFVAE--------NPSTALHKVSELYDRLGFAAVGKYNEFENLR 67

Query: 63  EKMTLRTANY-VASEQSPISPDTFAAIAS--WELYARKLTSPLFINPIIAGFYPDS--GE 117
               +       + ++  ++  + A   +        +   P  +   +A          
Sbjct: 68  RAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKA 127

Query: 118 VFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERD 177
             L  +   G    +  FV  G     I       ++  L  E    +    + Q    +
Sbjct: 128 PQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGE 187

Query: 178 TKSGWGATVYVVEPDKVTI 196
            +         V+   + +
Sbjct: 188 GEKR------NVDVASLEV 200

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.1 bits (127), Expect = 3e-09
 Identities = 35/201 (17%), Positives = 60/201 (29%), Gaps = 9/201 (4%)

Query: 4   NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
             G   VA+ GK+C  I     +       +     + +++ ++  +  G+ AD     +
Sbjct: 33  QGGLTSVAVRGKDCAVIVTQKKVPDK-LLDSSTVTHLFKITENIGCVMTGMTADSRSQVQ 91

Query: 64  KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTS---PLFINPIIAGFYPDSGEVFL 120
           +     AN+       I  D      +         +   PL    I+ G   + G   +
Sbjct: 92  RARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGP-QV 150

Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFW--QPGLSPEQLFEVCSQVVIQACERDT 178
              D AG         A G  Q       E     +   + EQ  E     +      D 
Sbjct: 151 YKCDPAGY-YCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDF 209

Query: 179 KSGWGATVYVVEPDKVTIRKI 199
           K      V VV  +    R +
Sbjct: 210 KPS-EIEVGVVTVENPKFRIL 229

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.6 bits (123), Expect = 8e-09
 Identities = 28/193 (14%), Positives = 57/193 (29%), Gaps = 7/193 (3%)

Query: 4   NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAE 63
             G   V + G++   +GV+               K+  +  ++ +   GL AD      
Sbjct: 26  KKGSTAVGVRGRDIVVLGVEK-KSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVIN 84

Query: 64  KMTLRTANYVASEQSPISPDTFAAIAS---WELYARKLTSPLFINPIIAGFYPDSGEVFL 120
           +  +   ++  + + P++ +      +             P  I+ +I GF  D     L
Sbjct: 85  RARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTP-RL 143

Query: 121 STLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKS 180
              D +G         A G     +    E  +               V+    E     
Sbjct: 144 YQTDPSGT-YHAWKANAIGRGAKSVREFLEKNYTDEAIETDD-LTIKLVIKALLEVVQSG 201

Query: 181 GWGATVYVVEPDK 193
           G    + V+  D+
Sbjct: 202 GKNIELAVMRRDQ 214

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

 Score = 48.2 bits (114), Expect = 7e-08
 Identities = 20/192 (10%), Positives = 48/192 (25%), Gaps = 24/192 (12%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
           I+ +       +G D  +  G   +     KV ++     L                   
Sbjct: 3   ILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEA 62

Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
                    +  + +      +  +  R                 D   +F+ + +    
Sbjct: 63  KLREWGGNLTKAAVELAKDWRTDRVLRR---------LEALLLVADKENIFIISGNGEVI 113

Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQ-PGLSPEQLFEVCSQVVIQACERDTKSGWGATVY 187
           +    D  A GS     +   ++  +   LS     E+  + +  A E    +       
Sbjct: 114 QPDD-DAAAIGSGGPYALAAAKALLRNTDLSAR---EIVEKAMTIAGEICIYTN------ 163

Query: 188 VVEPDKVTIRKI 199
                 + I ++
Sbjct: 164 ----QNIVIEEV 171

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Length = 180

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

 Score = 42.5 bits (99), Expect = 7e-06
 Identities = 29/187 (15%), Positives = 51/187 (27%), Gaps = 13/187 (6%)

Query: 6   GGAIVAMAGKNCFAIGVDHLLVQGDFTIA-EYENKVHQMSPHLYLIN-PGLCADGMQFAE 63
              I A+  K   A+  D  +  G   +      KV ++     L    G  AD     E
Sbjct: 5   ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFE 64

Query: 64  KMTLRTANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTL 123
           K   +   Y  + +           +      RKL + L +               +   
Sbjct: 65  KFEAKLEEYNGNLKRAAVELAKEWRSDK--VLRKLEAMLIVMNQDTLLLVSGTGEVIEPD 122

Query: 124 DMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVCSQVVIQACERDTKSGWG 183
           D           +A GS  N  +  G +  +         E+    +  A E    +   
Sbjct: 123 DG---------ILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQ 173

Query: 184 ATVYVVE 190
             +  +E
Sbjct: 174 IILEELE 180

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Length = 173

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

 Score = 34.4 bits (78), Expect = 0.004
 Identities = 29/192 (15%), Positives = 52/192 (27%), Gaps = 23/192 (11%)

Query: 9   IVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLR 68
           IV++       +G D  +  G+  +     KV ++          L       A+  TL 
Sbjct: 3   IVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKV-----LAGFAGGTADAFTLF 57

Query: 69  TANYVASEQSPISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGC 128
                  E         A     EL     T              D  E  + T      
Sbjct: 58  ELFERKLEMHQGHLLKSA----VELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVV 113

Query: 129 ETRKTDFVAGGSAQNMIMGIGESFWQ-PGLSPEQLFEVCSQVVIQACERDTKSGWGATVY 187
           +  +   +A GS  N  +    +  +   LS     E+  + +  A +    +       
Sbjct: 114 QPEEDQILAIGSGGNYALSAARALVENTELSAH---EIVEKSLRIAGDICVFTN------ 164

Query: 188 VVEPDKVTIRKI 199
                  TI ++
Sbjct: 165 ----TNFTIEEL 172

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1iruj_	204	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1ryph_	205	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1rypk_	198	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1rypj_	204	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1iruh_	202	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1ryp1_	222	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1irul_	201	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1rypl_	212	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1iru1_	213	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1irui_	220	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1yarh1	203	Proteasome beta subunit (catalytic) {Archaeon Ther	100.0
d1j2qh_	202	Proteasome beta subunit (catalytic) {Archaeon Arch	100.0
d1rypi_	222	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1ryp2_	233	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1rypc_	244	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1iruc_	250	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1iru2_	217	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1irug_	245	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1yara1	221	Proteasome alpha subunit (non-catalytic) {Archaeon	100.0
d1irua_	244	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1iruk_	199	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1rypb_	250	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1j2pa_	243	Proteasome alpha subunit (non-catalytic) {Archaeon	100.0
d1rype_	242	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1irue_	234	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1rypa_	243	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1rypd_	241	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1rypf_	233	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1irub_	233	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1rypg_	244	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1iruf_	238	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1q5qh_	224	Proteasome beta subunit (catalytic) {Rhodococcus e	100.0
d1irud_	243	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1q5qa_	227	Proteasome alpha subunit (non-catalytic) {Rhodococ	100.0
d2z3ba1	180	HslV (ClpQ) protease {Bacillus subtilis [TaxId: 14	99.96
d1m4ya_	171	HslV (ClpQ) protease {Thermotoga maritima [TaxId:	99.95
d1g3ka_	173	HslV (ClpQ) protease {Haemophilus influenzae [TaxI	99.94

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-50  Score=317.85  Aligned_cols=202  Identities=34%  Similarity=0.628  Sum_probs=192.9

Q ss_pred             CCCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCC
Q psy1779           2 SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPIS   81 (204)
Q Consensus         2 ~~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   81 (204)
                      .+.+|+|+|||+++||||||+|+|.+.|.++...+.+|||+|++|++++++|..+|++.|.++++.+++.|++.++.+++
T Consensus         3 ~~~nG~Tvigi~~~dgVvlaaD~r~s~g~~~~~~~~~Ki~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   82 (204)
T d1iruj_           3 MSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIK   82 (204)
T ss_dssp             TTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred             eeeCCceEEEEEECCEEEEEECCCcccCCeeEcCcccEEEEeCCCeEEEeccCchHHHHHHHHHHHhhhhhhhhcccccc
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHH
Q psy1779          82 PDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ  161 (204)
Q Consensus        82 ~~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~e  161 (204)
                      ++.+++++++++|.++. +||++++||||+|++..+|.+|.+||.|.......++++|+|+++++++||+.|+++||++|
T Consensus        83 ~~~~a~~l~~~~~~~~~-~p~~~~~lvaG~D~~~~~~~~~~~d~~g~~~~~~~~~~~G~g~~~~~~~l~~~~~~~ms~~e  161 (204)
T d1iruj_          83 PYTLMSMVANLLYEKRF-GPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDH  161 (204)
T ss_dssp             HHHHHHHHHHHHHTTTT-SCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHH
T ss_pred             hHHHHHHHHHHHHHhhh-ccceeEEEEEEEcCCCCceEEEEecCCCceeeecceEEechhHHHHHHHHHhccccCCCHHH
Confidence            99999999999998875 89999999999997456799999999999774566899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEeccCCC
Q psy1779         162 LFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD  204 (204)
Q Consensus       162 a~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~~~~  204 (204)
                      |++++.+||+.+.+||..++++++|++|+++|++++.+|+|+|
T Consensus       162 a~~l~~~al~~a~~rd~~sg~~~~v~ii~k~gi~~~~~~~r~D  204 (204)
T d1iruj_         162 LFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD  204 (204)
T ss_dssp             HHHHHHHHHHHHGGGBTTSCSCEEEEEEESSBEEEEEBCCCCC
T ss_pred             HHHHHHHHHHHHHhhcccCCCcEEEEEEeCCCEEEEEEecCCC
Confidence            9999999999999999999999999999999999999999998

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6e-50  Score=314.12  Aligned_cols=194  Identities=20%  Similarity=0.274  Sum_probs=184.8

Q ss_pred             CCCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCC
Q psy1779           2 SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPIS   81 (204)
Q Consensus         2 ~~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   81 (204)
                      +..+|+|+|||+|+||||||+|+|.+.|.++.+++.+||++|++|++++++|..+|++.|.++++.+++.|+.+++++ +
T Consensus         5 ~v~~GtTivgi~~~dgVvlaaD~r~s~g~~i~~~~~~ki~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~-~   83 (205)
T d1ryph_           5 EVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTP-S   83 (205)
T ss_dssp             CCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSC-C
T ss_pred             cccCcceEEEEEECCEEEEEECCccccCceeeccccceEEEccCceEEeeccchhHHHHHHHHHHHHHHHHHHHcCCc-c
Confidence            357899999999999999999999999999999999999999999999999999999999999999999999999865 5


Q ss_pred             HHHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHH
Q psy1779          82 PDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQ  161 (204)
Q Consensus        82 ~~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~e  161 (204)
                      +..+++++++++|.+|  +||++++|+||+|+ +++|+||++||.|++. +++++|+|+|+.+++++||+.|+++||++|
T Consensus        84 ~~~~~~~~~~~~~~~~--~p~~~~~lvaG~d~-~~~p~Ly~~d~~G~~~-~~~~~a~G~g~~~~~~~Le~~~~~~ms~~e  159 (205)
T d1ryph_          84 TETAASVFKELCYENK--DNLTAGIIVAGYDD-KNKGEVYTIPLGGSVH-KLPYAIAGSGSTFIYGYCDKNFRENMSKEE  159 (205)
T ss_dssp             HHHHHHHHHHHHHHTT--TTCCEEEEEEEEET-TTEEEEEEECTTSCCE-EESEEEESGGGGGGHHHHHHHCCTTCCHHH
T ss_pred             HHHHHHHHHHHHHhCc--cCceEEEEEEeecC-CCCcEEEEECCCCcEE-ecCeEEeecCcHHHHHHHHhhhhcccCHHH
Confidence            8889999999999876  79999999999997 7899999999999999 699999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEec
Q psy1779         162 LFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIA  200 (204)
Q Consensus       162 a~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~  200 (204)
                      |++++++||+.+.+||+.++++++|++|+|+|++++.+.
T Consensus       160 a~~l~~~al~~a~~rD~~sg~~v~v~iitk~G~~~~~~~  198 (205)
T d1ryph_         160 TVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIFY  198 (205)
T ss_dssp             HHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHhcCcCCCCEEEEEEcCCceEEEecC
Confidence            999999999999999999999999999999999988764

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.5e-50  Score=312.28  Aligned_cols=191  Identities=19%  Similarity=0.289  Sum_probs=182.4

Q ss_pred             CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779           6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF   85 (204)
Q Consensus         6 g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   85 (204)
                      |+|+|||+++||||||+|+|.+.|.++..++.+|||+|++|++++++|..+|++.+.+.++.+++.|+++++++++++.+
T Consensus         1 m~tiigi~~~dgVvlaaD~r~s~g~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (198)
T d1rypk_           1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV   80 (198)
T ss_dssp             CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred             CeEEEEEEECCEEEEEEcCCcccCCEeecCccceEEEecCCEEEEecCCcccHHHHHHHHHHHHHHHHHHhCCCcchHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc-ccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHH
Q psy1779          86 AAIASWELYAR-KLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFE  164 (204)
Q Consensus        86 a~~l~~~l~~~-r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~  164 (204)
                      ++++++.+|++ +..|||++++|+||||+.+++|+||++||+|++. +++|+++|+|+++++++||+.|+++||++||++
T Consensus        81 ~~~i~~~~~~~~~~~~P~~~~~liaG~D~~~~~p~L~~id~~G~~~-~~~~~a~G~gs~~~~~~Le~~~~~~~~~eea~~  159 (198)
T d1rypk_          81 SSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKV-ELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLD  159 (198)
T ss_dssp             HHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEE-ECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccceEEEEEEEecCCCceEEEEecccccEE-ecceEEEeccchhhHHHHHhcccccCCHHHHHH
Confidence            99999999875 2238999999999999755799999999999999 699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCEEEEEEcCCceEEE
Q psy1779         165 VCSQVVIQACERDTKSGWGATVYVVEPDKVTIR  197 (204)
Q Consensus       165 ~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~  197 (204)
                      ++.+||+.+.+||+.++++++|++|+++|++..
T Consensus       160 l~~~~l~~~~~~d~~s~~~~~v~vi~~dG~~~~  192 (198)
T d1rypk_         160 LLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQV  192 (198)
T ss_dssp             HHHHHHHHHHHHCSBCCCCEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHhcCcCCCcEEEEEEcCCCeEEc
Confidence            999999999999999999999999999998753

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-49  Score=309.86  Aligned_cols=200  Identities=36%  Similarity=0.695  Sum_probs=189.8

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      +.+|+|+|||+++||||||+|+|.+.+.++..++.+|||++ +|++++++|..+|++.|.++++.+++.|+++++.++++
T Consensus         5 ~~nG~Tivgi~~~d~VvlaaD~r~~~~~~~~~~~~~Ki~~i-~~i~~~~~G~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   83 (204)
T d1rypj_           5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY-GHVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEP   83 (204)
T ss_dssp             GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEE-TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             ccCCeEEEEEEECCEEEEEEcCCcccCCEeecCcccEEEEc-CCEEEEecCcchHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            56899999999999999999999999999999999999999 59999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHH
Q psy1779          83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQL  162 (204)
Q Consensus        83 ~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea  162 (204)
                      +.+++++++.+|.++. +||++++|++|+|+.++.|+||++||+|++.+...++++|+|+++++++||+.|+++||++||
T Consensus        84 ~~la~~l~~~l~~~~~-~p~~v~~li~G~d~~~g~~~L~~~D~~G~~~~~~~~~~~G~g~~~a~~~l~~~~~~~ms~~ea  162 (204)
T d1rypj_          84 ETFTQLVSSSLYERRF-GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDL  162 (204)
T ss_dssp             HHHHHHHHHHHHTTTT-SCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHHH
T ss_pred             hHHHHHHHHHHHhhcc-cceeeeEEEEEEecCCCcceEEEeCCCCccccccCcEEeecchHHHHHHHHhccccCCCHHHH
Confidence            9999999999998865 899999999999974567999999999998832357888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEeccCCC
Q psy1779         163 FEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD  204 (204)
Q Consensus       163 ~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~~~~  204 (204)
                      ++++++||..+.++|..++++++|++|+++|++++.+|+|.|
T Consensus       163 ~~l~~~al~~a~~~d~~sg~~~~v~ii~kdg~~~~~~~l~~D  204 (204)
T d1rypj_         163 FETISQALLNAADRDALSGWGAVVYIIKKDEVVKRYLKMRQD  204 (204)
T ss_dssp             HHHHHHHHHHHHTTBTTSCSCEEEEEEESSCEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHHhcCccCCeEEEEEEECCceEEEEeccCCC
Confidence            999999999999999999999999999999999999999998

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.5e-49  Score=307.11  Aligned_cols=191  Identities=20%  Similarity=0.282  Sum_probs=185.3

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      ||+|||+++||||||+|+|.+.|.++.+++.+||++|++|++++++|..+|++.+.+.++.+++.|+.+++++++++.++
T Consensus         1 TTivai~~~dgVvlaaD~r~t~g~~i~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (202)
T d1iruh_           1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA   80 (202)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEECCccccCCeeecCCcceEEEcCCcEEEEeccchHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779          87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC  166 (204)
Q Consensus        87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~  166 (204)
                      +++++++|.+|  +||++++|++|+|+ +++|+||.+||.|++. +++|+|+|+|+.+++++||+.|+++||.+||++++
T Consensus        81 ~~l~~~l~~~~--~p~~~~~lvaG~d~-~~~~~l~~~d~~g~~~-~~~~~a~G~g~~~a~~~L~~~~~~~~~~~ea~~l~  156 (202)
T d1iruh_          81 SLFKEMCYRYR--EDLMAGIIIAGWDP-QEGGQVYSVPMGGMMV-RQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFT  156 (202)
T ss_dssp             HHHHHHHHHTT--TTCCEEEEEEEEET-TTEEEEEEECTTSCCE-ECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHH
T ss_pred             HHHHHHHHhhc--cceeEEEEEEEeec-CCCcEEEEECCCCcee-ecceeEEeCCHHHHHHHHHHhhccCCcHHHHHHHH
Confidence            99999999876  79999999999998 7899999999999999 69999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCEEEEEEcCCceEEEEecc
Q psy1779         167 SQVVIQACERDTKSGWGATVYVVEPDKVTIRKIAT  201 (204)
Q Consensus       167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~  201 (204)
                      ++||+.+.+||+.++++++|++|+++|++++.++.
T Consensus       157 ~~al~~a~~rD~~sg~~i~v~vi~~~G~~~~~~~~  191 (202)
T d1iruh_         157 ANALALAMERDGSSGGVIRLAAIAESGVERQVLLG  191 (202)
T ss_dssp             HHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECG
T ss_pred             HHHHHHHHhhCCCCCCCEEEEEEeCCCeEEEEcCH
Confidence            99999999999999999999999999999988775

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.2e-49  Score=310.89  Aligned_cols=199  Identities=23%  Similarity=0.335  Sum_probs=189.9

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcC-CCCC
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQ-SPIS   81 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~   81 (204)
                      +++|+|+|||+++||||||+|+|.+.+.++..++.+|||+|++|++++++|..+|++.|.++++.+++.|++.++ .+++
T Consensus         6 ~~nG~Tivgi~~~dgVviaaD~r~s~~~~i~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   85 (222)
T d1ryp1_           6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLS   85 (222)
T ss_dssp             CCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEECSTTCEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             cCCCcEEEEEEECCEEEEEECCCcccCCEeccCCcceEEEecCCEEEEeccChHHHHHHHHHHHHHhhhhhhhcCCCCCc
Confidence            579999999999999999999999999999999999999999999999999999999999999999999998765 6789


Q ss_pred             HHHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCC-------
Q psy1779          82 PDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ-------  154 (204)
Q Consensus        82 ~~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~-------  154 (204)
                      +..++++++..+|..+. +||++++|++|+|+ +++|+||.+||+|++. +++++|+|+|+++++++||+.|+       
T Consensus        86 ~~~~~~~~~~~~~~~~~-~p~~~~~li~G~d~-~~~~~Ly~~D~~G~~~-~~~~~a~G~g~~~a~~~Le~~~~~~~~~~~  162 (222)
T d1ryp1_          86 INSAARNIQHLLYGKRF-FPYYVHTIIAGLDE-DGKGAVYSFDPVGSYE-REQCRAGGAAASLIMPFLDNQVNFKNQYEP  162 (222)
T ss_dssp             HHHHHHHHHHHHHTTTT-SCCCEEEEEEEECT-TSCEEEEEECTTSCEE-EESEEEEETTHHHHHHHHHHHTSCTTCBCT
T ss_pred             HHHHHHHHHHHHHhhhh-hhheeeeeEEEEeC-CCCeEEEEECCCcEEE-EeceEEEcccHHHHHHHHHHhhccccccCc
Confidence            99999999999988776 99999999999998 7889999999999999 69999999999999999999886       


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEeccCCC
Q psy1779         155 ----------PGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD  204 (204)
Q Consensus       155 ----------~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~~~~  204 (204)
                                ++||++||++++.+||+.+.+||+.++++++|++|+|||++++.+++|.|
T Consensus       163 ~~~~~~~~~~~~lt~~ea~~l~~~al~~a~~rd~~sg~~v~v~iitkdGv~~~~~~l~~D  222 (222)
T d1ryp1_         163 GTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD  222 (222)
T ss_dssp             TSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEEEEEECCCC
T ss_pred             ccchhhhcccccccHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEeCCCEEEEEEecCCC
Confidence                      68999999999999999999999999999999999999999999999998

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-48  Score=304.76  Aligned_cols=186  Identities=19%  Similarity=0.202  Sum_probs=180.4

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      ||+|||+++||||||+|+|.++|.++.+.+.+|||+|+++++|+++|..+|++.+.+.++.+++.|+..++++++++.++
T Consensus         1 TT~igi~~~dgVvlaaD~~~t~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (201)
T d1irul_           1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS   80 (201)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEEcCccccCCEeecCCcccEEEeCCcEEEEEcCccchHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779          87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC  166 (204)
Q Consensus        87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~  166 (204)
                      +++++++|.+|. +||++++|+||+|+  ++|+||++||+|++. +++++|+|+|+++++++||+.|+++||.+||++++
T Consensus        81 ~~l~~~~~~~~~-~p~~~~~lvaG~d~--~~~~l~~~d~~G~~~-~~~~~a~G~g~~~~~~~Le~~~~~~ms~eea~~l~  156 (201)
T d1irul_          81 KLLANMVYQYKG-MGLSMGTMICGWDK--RGPGLYYVDSEGNRI-SGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLA  156 (201)
T ss_dssp             HHHHHHHHTTTT-SCCCBEEEEEEECS--SSEEEEEEESSSCEE-ECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred             HHHHHHhhhccC-CCceEEEEEEEEec--CCceEEEEccCceEE-EeeeEEecCchHHHHHHHHhhccCCCCHHHHHHHH
Confidence            999999998876 89999999999996  789999999999999 69999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779         167 SQVVIQACERDTKSGWGATVYVVEPDKVTI  196 (204)
Q Consensus       167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~  196 (204)
                      ++||+.+.++|..++++++|++|+++|++.
T Consensus       157 ~~~l~~~~~~d~~sg~~~~v~~i~~~G~~~  186 (201)
T d1irul_         157 RRAIYQATYRDAYSGGAVNLYHVREDGWIR  186 (201)
T ss_dssp             HHHHHHHHHHBTTCCSEEEEEEECSSCEEE
T ss_pred             HHHHHHHHHhCCCCCCceEEEEEeCCceEE
Confidence            999999999999999999999999999764

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-48  Score=304.97  Aligned_cols=188  Identities=21%  Similarity=0.232  Sum_probs=181.3

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      ||+|||+|+||||||+|+|.++|.++...+.+|||+|++|++++++|..+|++.+.+.++.+++.|+..++++++++.++
T Consensus         1 TT~iai~~kdgVvlaaD~r~t~g~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (212)
T d1rypl_           1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS   80 (212)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEeccchHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779          87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC  166 (204)
Q Consensus        87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~  166 (204)
                      +++++++|.++. .|+++..+++|+|+ +++|+||++||+|++. +++++|+|+|+++++++||+.|+++||++||++++
T Consensus        81 ~~ls~~~~~~~~-~p~~~~~~l~G~~~-~~g~~Ly~id~~G~~~-~~~~~a~G~gs~~~~~~Le~~~~~~mt~~ea~~l~  157 (212)
T d1rypl_          81 KILSNLVYQYKG-AGLSMGTMICGYTR-KEGPTIYYVDSDGTRL-KGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLG  157 (212)
T ss_dssp             HHHHHHHHHTTT-SCCCBEEEEEEEET-TTEEEEEEEETTCCEE-ECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHhcc-CCcceEeeeeEeec-CCCCEEEEECCCceEE-ecceEEEccCcccchhHHHHhccCCCCHHHHHHHH
Confidence            999999998766 79999999999997 7899999999999999 69999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCEEEEEEcCCceEEE
Q psy1779         167 SQVVIQACERDTKSGWGATVYVVEPDKVTIR  197 (204)
Q Consensus       167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~  197 (204)
                      .+||+.+.+||+.++++++|++|+++|++..
T Consensus       158 ~~al~~~~~rd~~sg~~v~v~vi~~~g~~~~  188 (212)
T d1rypl_         158 KRSILAAAHRDAYSGGSVNLYHVTEDGWIYH  188 (212)
T ss_dssp             HHHHHHHHHHBTTCCSEEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHhcCCCCCceEEEEEcCCceEEe
Confidence            9999999999999999999999999997743

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.3e-47  Score=296.70  Aligned_cols=199  Identities=24%  Similarity=0.364  Sum_probs=191.0

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|+|.+.|.++...+.+||++|++|++++++|..+|++.+.++++.+++.|+.+++.++++
T Consensus         6 ~~nG~Tivai~~~dgVviaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   85 (213)
T d1iru1_           6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT   85 (213)
T ss_dssp             CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             cCCCcEEEEEEECCEEEEEECCccccCceeeccccCEEEEcCCCEEEEecCccchHHHHHHHHHHHHHHHHHhhCCchhH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccC---------
Q psy1779          83 DTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFW---------  153 (204)
Q Consensus        83 ~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~---------  153 (204)
                      +.++++++..+|.++. +|++++.+++|+|+ +++|.+|.+||.|.+. +++++++|+|+++++++||+.|         
T Consensus        86 ~~~~~~~~~~~~~~~~-~~~~~~~~~~g~d~-~~~~~l~~~d~~g~~~-~~~~~a~G~g~~~a~~~l~~~~~~~~~~~~~  162 (213)
T d1iru1_          86 GAIAAMLSTILYSRRF-FPYYVYNIIGGLDE-EGKGAVYSFDPVGSYQ-RDSFKAGGSASAMLQPLLDNQVGFKNMQNVE  162 (213)
T ss_dssp             HHHHHHHHHHHHTTTT-SCCCEEEEEEEECT-TSCEEEEEECTTSCEE-EESEEEEETTHHHHHHHHHHHTTCCSCSSCC
T ss_pred             HHHHHHHHHHHHHHHh-hhcccccceEEEec-CCCcEEEecCCcceee-ecCeeeecCccHHHHHHHHHhhcccchhccc
Confidence            9999999999998765 89999999999998 8899999999999999 6999999999999999998765         


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEeccCCC
Q psy1779         154 QPGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIATRMD  204 (204)
Q Consensus       154 ~~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~~~~~  204 (204)
                      .++||++||++++.+||..+.++|+.++++++|++|+++|++++++++|+|
T Consensus       163 ~~~~s~~ea~~~~~~~l~~~~~~d~~sg~~~~v~~i~k~G~~~~~~~~r~D  213 (213)
T d1iru1_         163 HVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEGIREETVSLRKD  213 (213)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTEEEEEEEECCCC
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeCCCEEEEEEeccCC
Confidence            478999999999999999999999999999999999999999999999998

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.2e-47  Score=300.82  Aligned_cols=186  Identities=18%  Similarity=0.193  Sum_probs=179.7

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      ||+|||+|+||||||+|+|.++|.++.+.+.+|||+|++|++++++|..+|++.+.+.++.+++.|+++++++++++.++
T Consensus         1 TTivgi~~~dgVvlaaD~r~s~g~~i~~~~~~KI~~i~~~i~~~~aG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (220)
T d1irui_           1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN   80 (220)
T ss_dssp             CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEEcCCcccCCEeecCCcccEEEecCcEEEEEccccHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779          87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC  166 (204)
Q Consensus        87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~  166 (204)
                      +++++++|++|  +|+++++|+||+|.  ++|+||++||.|++. +++|+|+|+|+++++++|++.|+++||.+||++++
T Consensus        81 ~~l~~~~y~~~--~p~~~~~ivaG~D~--~g~~L~~id~~G~~~-~~~~~a~Gsgs~~a~~~L~~~~~~~~s~~ea~~l~  155 (220)
T d1irui_          81 RMLKQMLFRYR--GYIGAALVLGGVDV--TGPHLYSIYPHGSTD-KLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLV  155 (220)
T ss_dssp             HHHHHHHHHTT--TCSCEEEEEEEECS--SCEEEEEECTTSCEE-ECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHH
T ss_pred             HHHHhhhhhcc--cccceeEEEEEEeC--CCcEEEEEeCCCcEE-EeeEEEEccccHHHHHHHHHhcccCCCHHHHHHHH
Confidence            99999999876  79999999999996  789999999999999 69999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCEEEEEEcCCceEEE
Q psy1779         167 SQVVIQACERDTKSGWGATVYVVEPDKVTIR  197 (204)
Q Consensus       167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~  197 (204)
                      .+||+.+.+||+.++++++|++|+++|++..
T Consensus       156 ~~al~~~~~~D~~sg~~i~i~vitkdg~~~~  186 (220)
T d1irui_         156 SEAIAAGIFNDLGSGSNIDLCVISKNKLDFL  186 (220)
T ss_dssp             HHHHHHHHHHCTTCCSCEEEEEEETTEEECC
T ss_pred             HHHHHHhhccCCCCCCcEEEEEEECCCeEEe
Confidence            9999999999999999999999999998654

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=9.6e-47  Score=295.23  Aligned_cols=184  Identities=17%  Similarity=0.248  Sum_probs=176.4

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      ||+|||+++||||||+|+|++.|+++...+.+|||+|++|+++++||..+|++.+.+.++.+++.|+..++++++++.++
T Consensus         1 TT~igi~~kdgVvia~D~r~s~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (203)
T d1yarh1           1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVA   80 (203)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CcEEEEEECCEEEEEECCCcccCCEeecCCcccEEEecCCeeeecCCCcchHHHHHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779          87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC  166 (204)
Q Consensus        87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~  166 (204)
                      ++++++++..|. |||++++|+||+|.   +|+||.+||+|+++ +++++|+|+|++.++++||+.|+++||++||++++
T Consensus        81 ~~l~~~~~~~~~-~p~~~~~lvaG~d~---~p~l~~~d~~G~~~-~~~~~a~G~g~~~~~~~L~~~~~~~~s~eea~~l~  155 (203)
T d1yarh1          81 TLLSNMLNQVKY-MPYMVQLLVGGIDT---APHVFSIDAAGGSV-EDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLV  155 (203)
T ss_dssp             HHHHHHHHHTTT-SCCCEEEEEEEESS---SEEEEEECTTCCEE-EESEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred             HHHHHHHHhhcc-CCccceeEEEEEcC---CCeeEecCCcccee-cccccccCCCcHHHHHHHHHhccCCCCHHHHHHHH
Confidence            999999988876 99999999999984   69999999999999 69999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCEEEEEEcCC-ceE
Q psy1779         167 SQVVIQACERDTKSGWGATVYVVEPD-KVT  195 (204)
Q Consensus       167 ~~~l~~~~~~d~~~~~~~~v~~i~~~-g~~  195 (204)
                      .+||+.+.+||+.++++++|++|+++ |.+
T Consensus       156 ~~~l~~~~~~d~~~~~~v~v~ii~~~~g~~  185 (203)
T d1yarh1         156 IRAISAAKQRDSASGGMIDVAVITRKDGYV  185 (203)
T ss_dssp             HHHHHHHHHHCTTCCSCCEEEEEETTTEEE
T ss_pred             HHHHHHHHHhcCCCCCeEEEEEEECCCCEE
Confidence            99999999999999999999999864 543

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2e-46  Score=292.92  Aligned_cols=187  Identities=19%  Similarity=0.292  Sum_probs=178.9

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      ||+|||+++||||||+|+|.+.|.++.+.+.+|||+|++|++|+++|..+|++.|.++++.+++.|+..++++++++.++
T Consensus         1 TT~vgi~~~dgVvlaaD~r~s~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a   80 (202)
T d1j2qh_           1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA   80 (202)
T ss_dssp             CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CcEEEEEECCEEEEEECCCcccCCeeccCccceEEEecCcEEEEecCcchhHHHHHHHHHHHhhhhhhccCCCccHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779          87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC  166 (204)
Q Consensus        87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~  166 (204)
                      +++++++|.+|. +||++++|+||+|+  .+|+||.+||+|+..+..+++|+|+|+++++++||+.|+++||++||++++
T Consensus        81 ~~~~~~~~~~~~-~p~~~~~lvaG~d~--~~~~l~~~d~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~l~  157 (202)
T d1j2qh_          81 TLTSNLLNSYRY-FPYLVQLLIGGIDS--EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELA  157 (202)
T ss_dssp             HHHHHHHHHTTT-SCCCEEEEEEEEET--TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred             HHHHHHHhhhcc-cceeeEEEEEEEcC--CCceEEEEeCCCCeEeecceEEccCChHHHHHHHHhhcCCCCCHHHHHHHH
Confidence            999999998877 89999999999996  789999999999987434689999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779         167 SQVVIQACERDTKSGWGATVYVVEPDKVTI  196 (204)
Q Consensus       167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~  196 (204)
                      ++||+.+.++|+.++++++|++|+++|++.
T Consensus       158 ~~al~~~~~~d~~~g~~v~v~~i~~~g~~~  187 (202)
T d1j2qh_         158 VRAIYSAMKRDSASGDGIDVVKITEDEFYQ  187 (202)
T ss_dssp             HHHHHHHHTTCTTSCSCEEEEEECSSCEEE
T ss_pred             HHHHHHHHHhcCCCCCeEEEEEEECCCEEE
Confidence            999999999999999999999999999763

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6e-46  Score=294.52  Aligned_cols=182  Identities=20%  Similarity=0.233  Sum_probs=175.8

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      ||+|||+++||||||+|+|.+.|.++.+.+.+|||+|++|++++++|..+|++.+.+.++.+++.|++.++.++++..++
T Consensus         1 TTiVgik~~dGVviaaD~r~s~g~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~v~~~a   80 (222)
T d1rypi_           1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL   80 (222)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCceeecCCcccEEEEcCCEEEEecccchHHHHHHHHHHHHHHHhhhhhCCCCcHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHHH
Q psy1779          87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEVC  166 (204)
Q Consensus        87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~~  166 (204)
                      +++++.+|.++  +|+++++|+||+|+  ++|+||.+||+|++. +++++|+|+|+++++++||+.|+++||++||++++
T Consensus        81 ~~l~~~~~~~~--~p~~~~~l~aG~d~--~g~~Ly~id~~G~~~-~~~~~a~Gsg~~~a~~~Le~~~k~~ms~eea~~l~  155 (222)
T d1rypi_          81 QMLKQHLFKYQ--GHIGAYLIVAGVDP--TGSHLFSIHAHGSTD-VGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLA  155 (222)
T ss_dssp             HHHHHHHHHTT--TCSCEEEEEEEEET--TEEEEEEECTTSCEE-ECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHH
T ss_pred             HHHHHHHHhhh--hccceeEEEEEEcC--CCcEEEEEecCcceE-EeeEEEECCCcHHHHHHHHhhccCCCCHHHHHHHH
Confidence            99999998765  79999999999996  899999999999999 69999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccCCCEEEEEEcCCc
Q psy1779         167 SQVVIQACERDTKSGWGATVYVVEPDK  193 (204)
Q Consensus       167 ~~~l~~~~~~d~~~~~~~~v~~i~~~g  193 (204)
                      ++||+.+.+||..++++++|+++++++
T Consensus       156 ~~al~~a~~~D~~sg~~i~i~vi~~~~  182 (222)
T d1rypi_         156 SDAIQAGIWNDLGSGSNVDVCVMEIGK  182 (222)
T ss_dssp             HHHHHHHHHHCTTCCSCEEEEEEETTS
T ss_pred             HHHHHHHhcccCCCCCcEEEEEEEcCC
Confidence            999999999999999999999998764

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-46  Score=297.69  Aligned_cols=192  Identities=16%  Similarity=0.207  Sum_probs=179.8

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhc-----CC
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASE-----QS   78 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~-----~~   78 (204)
                      .+|+|+|||+++||||||+|+|.+.|.++...+.+|||+|++|++++++|..+|++.+.+.++.+++.|++++     +.
T Consensus         6 ~tGtTivgi~~~dgVvlaaD~r~s~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~   85 (233)
T d1ryp2_           6 VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEE   85 (233)
T ss_dssp             EEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTT
T ss_pred             cccceEEEEEECCEEEEEECCCcccCCeeecCCcceEEEeCCCEEEEeccCchHHHHHHHHHHHHHHHHHHhhCCCCCCc
Confidence            4799999999999999999999999999999999999999999999999999999999999999999888765     56


Q ss_pred             CCCHHHHHHHHHHHHHhccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCC---
Q psy1779          79 PISPDTFAAIASWELYARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ---  154 (204)
Q Consensus        79 ~~~~~~la~~l~~~l~~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~---  154 (204)
                      ++++..+++++++++|+++. .+||++++|++|+|+ +++|+||.+||+|++. +++++|+|+|+++++++||+.|+   
T Consensus        86 ~~~~~~~a~~l~~~~y~~~~~~~P~~~~~liaG~d~-~g~~~ly~~d~~G~~~-~~~~~a~G~g~~~a~~~Le~~~~~~~  163 (233)
T d1ryp2_          86 ALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQS-NGDQFLRYVNLLGVTY-SSPTLATGFGAHMANPLLRKVVDRES  163 (233)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECT-TSCEEEEEEETTCCEE-CCSEEECTHHHHHHHHHHTTTCCSGG
T ss_pred             ccCHHHHHHHHHHHHHhhccccCCceeEEEEEEEcC-CCCeEEEEEcCCCcEE-eeeeEEecCccHHHHHHHHHHHhhcc
Confidence            78999999999999998753 389999999999998 7889999999999999 69999999999999999999997   


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCC-ceEEE
Q psy1779         155 --PGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPD-KVTIR  197 (204)
Q Consensus       155 --~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~-g~~~~  197 (204)
                        ++||++||++++++||+.+.+||+.++++++|++|++| |+++.
T Consensus       164 ~~~~ms~eeA~~l~~~al~~~~~rD~~sg~~i~i~~itkd~g~~~~  209 (233)
T d1ryp2_         164 DIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFK  209 (233)
T ss_dssp             GGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEE
T ss_pred             cccccCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCCCEEEC
Confidence              78999999999999999999999999999999999998 55544

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.1e-46  Score=298.83  Aligned_cols=189  Identities=11%  Similarity=0.104  Sum_probs=180.3

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|+|.+.+..+.+.+.+||++|++|++++++|..+|++.+.+.++.+++.|+.+++++++++
T Consensus        29 ~~G~T~vgi~~~dgVvlaad~r~s~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~  108 (244)
T d1rypc_          29 SHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVE  108 (244)
T ss_dssp             TTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             hcCCCEEEEEeCCEEEEEEeCCccCCCcccCCccceEEEcCCCeEEEEecccCcHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            78999999999999999999999999888888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHH
Q psy1779          84 TFAAIASWELYAR--KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPE  160 (204)
Q Consensus        84 ~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~  160 (204)
                      .+++.++.+++..  +. .|||++++||||+|+ +++|+||++||+|++. +++++|+|+|+++++++||+.|+++||++
T Consensus       109 ~~~~~l~~~~~~~~~~~~~rP~~~~~ll~G~d~-~~gp~Ly~id~~Gs~~-~~~~~a~G~g~~~a~~~Le~~~~~~ms~e  186 (244)
T d1rypc_         109 ILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDD-RYGYQLYTSNPSGNYT-GWKAISVGANTSAAQTLLQMDYKDDMKVD  186 (244)
T ss_dssp             HHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEET-TTEEEEEEECTTCCEE-EBSEEEESTTHHHHHHHHHHHCCTTCCHH
T ss_pred             HHHHHHHHHHhhhhhccccCccceeEEEEEEec-CCCceEEEecCCCcEe-eeeeeeccchhHHHHHHHHhcccCCCCHH
Confidence            9999999998654  22 389999999999997 7789999999999999 79999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCEEEEEEcCCce
Q psy1779         161 QLFEVCSQVVIQACERDTKSGWGATVYVVEPDKV  194 (204)
Q Consensus       161 ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~  194 (204)
                      ||++++++||+.+.++|..++++++|++|++++.
T Consensus       187 eai~l~~~al~~a~~~d~~~~~~iei~ii~~~~~  220 (244)
T d1rypc_         187 DAIELALKTLSKTTDSSALTYDRLEFATIRKGAN  220 (244)
T ss_dssp             HHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSS
T ss_pred             HHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCc
Confidence            9999999999999999999999999999999885

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.8e-46  Score=300.59  Aligned_cols=190  Identities=9%  Similarity=0.114  Sum_probs=179.8

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|++.+.+.++..++.+|||+|++|++++++|..+|++.+.+.++.+++.|++.+++++++
T Consensus        27 v~~G~tvvgik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~  106 (250)
T d1iruc_          27 IGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPC  106 (250)
T ss_dssp             HTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HhcCCcEEEEEeCCEEEEEEeCccccCCcccCcccceEEECCCcEEEEeecccchHHHHHHHHHHHHHHHHHHcCCCcch
Confidence            37899999999999999999999999988888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc---cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCC-CCC
Q psy1779          83 DTFAAIASWELYARK---LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP-GLS  158 (204)
Q Consensus        83 ~~la~~l~~~l~~~r---~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~-~ms  158 (204)
                      +.+++.++.+++.+.   ..|||++++|++|+|+ +++|+||.+||+|++. +++++|+|+|++.++++||+.|++ +||
T Consensus       107 ~~la~~l~~~~~~~~~~~~~rP~~~~~li~G~D~-~~gp~Ly~~Dp~G~~~-~~~~~a~G~gs~~a~~~Le~~y~~~~ms  184 (250)
T d1iruc_         107 EQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDK-HYGFQLYQSDPSGNYG-GWKATCIGNNSAAAVSMLKQDYKEGEMT  184 (250)
T ss_dssp             HHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEET-TTEEEEEEEETTTEEE-ECSEEEESTTTTHHHHHHHHHCCTTCCC
T ss_pred             HHHHHHHHHHHHHHhhhccCCcceEEEEEEEEcC-CCCCEEEEEcccccEe-eeeEEEeCcChHHHHHHHHhhcccCCCC
Confidence            999999999987652   1389999999999998 7799999999999999 699999999999999999999985 899


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCce
Q psy1779         159 PEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKV  194 (204)
Q Consensus       159 ~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~  194 (204)
                      ++||++++++||+.+.++|..++++++|++|++++.
T Consensus       185 ~eeai~la~~al~~~~~~d~~~~~~iei~ii~~~~~  220 (250)
T d1iruc_         185 LKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENG  220 (250)
T ss_dssp             HHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSS
T ss_pred             HHHHHHHHHHHHHHHhcccCCCCCeEEEEEEEcCCC
Confidence            999999999999999999999999999999999874

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.1e-45  Score=289.40  Aligned_cols=192  Identities=19%  Similarity=0.219  Sum_probs=179.6

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHH-hcCCCCCH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVA-SEQSPISP   82 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~~~~   82 (204)
                      .+|+|+|||+++||||||+|+|.+.|.++...+.+||++|++|++++++|..+|++.|.+.++.+...++. .++.++++
T Consensus         6 ~~GtTivgi~~~dgVviaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v   85 (217)
T d1iru2_           6 VTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSP   85 (217)
T ss_dssp             SEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCCH
T ss_pred             CcccEEEEEEECCEEEEEEcCCcccCCeeecCCcceEEEeCCCeEEEeccccHHHHHHHHHHHHHHHHhhhhcCCCCCCH
Confidence            47999999999999999999999999999999999999999999999999999999999999998887765 45789999


Q ss_pred             HHHHHHHHHHHHhccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccC--CCCCCH
Q psy1779          83 DTFAAIASWELYARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFW--QPGLSP  159 (204)
Q Consensus        83 ~~la~~l~~~l~~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~--~~~ms~  159 (204)
                      +.+++++++.+|+++. .+|+++++|+||+|.  ++|+||.+||+|++. +++++|+|+|+++++++||+.|  +++||.
T Consensus        86 ~~~a~~l~~~~y~~~~~~~p~~~~~li~G~d~--~~~~l~~~D~~G~~~-~~~~~a~G~g~~~a~~~Le~~~~~~~~lt~  162 (217)
T d1iru2_          86 RAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD--GESFLGYVDMLGVAY-EAPSLATGYGAYLAQPLLREVLEKQPVLSQ  162 (217)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCEEEEEEEEET--TEEEEEEECSSCCEE-ECSEEECTTHHHHTHHHHHHHHTSCSCCCH
T ss_pred             HHHHHHHHHHHHHhccccCcccceEEEEEEcC--CCcEEEEEecCceeE-eeeEEeccCcHHHHHHHHHHHhcccCCCCH
Confidence            9999999999998853 389999999999995  899999999999999 6999999999999999999965  489999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEE
Q psy1779         160 EQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRK  198 (204)
Q Consensus       160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~  198 (204)
                      +||++++.+||+.+.+||+.++++++|++|+++|++++.
T Consensus       163 ~ea~~l~~~al~~a~~rd~~sg~~i~i~vi~~~G~~~~~  201 (217)
T d1iru2_         163 TEARDLVERCMRVLYYRDARSYNRFQTATVTEKGVEIEG  201 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhcCcCCCcEEEEEEeCCCEEEcC
Confidence            999999999999999999999999999999999998643

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.1e-45  Score=294.31  Aligned_cols=186  Identities=12%  Similarity=0.124  Sum_probs=173.4

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|++.+.+.+ ...+.+|||+|++|+++++||..+|++.+.+.++.+++.|+++++++++++
T Consensus        31 ~~G~t~VGik~~dgVvlaad~~~~~~~~-~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~g~~i~~~  109 (245)
T d1irug_          31 ENSSTAIGIRCKDGVVFGVEKLVLSKLY-EEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLK  109 (245)
T ss_dssp             HTSCCEEEEECSSBEEEEEEEECSCTTB-CTTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             HcCCcEEEEEeCCEEEEEEecccccccc-ccCccceEEEcCCCEEEEeccCchhHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            6899999999999999999999877554 578889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHH
Q psy1779          84 TFAAIASWELYAR--KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPE  160 (204)
Q Consensus        84 ~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~  160 (204)
                      .++++++++++..  +. .|||+|++|+||+|+ +++|+||++||+|++. +++++|+|++++.++++||+.|+++||.+
T Consensus       110 ~la~~la~~~~~~t~~~~~rP~~vs~li~G~D~-~~gp~Ly~iDp~G~~~-~~~~~a~G~gs~~a~~~Le~~~~~dmt~e  187 (245)
T d1irug_         110 HLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSV-NDGAQLYMIDPSGVSY-GYWGCAIGKARQAAKTEIEKLQMKEMTCR  187 (245)
T ss_dssp             HHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEET-TTEEEEEEECTTCCEE-EBSEEEESTTHHHHHHHHTTSCGGGCCHH
T ss_pred             HHHHHHHHHHHHhhccccccccceEEEEEEEcC-CCCceEEEEcCCceEE-eeeEEEECCccHHHHHHHHhhcCCCCCHH
Confidence            9999999987554  33 289999999999998 7899999999999999 69999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCEEEEEEcCC
Q psy1779         161 QLFEVCSQVVIQACERDTKSGWGATVYVVEPD  192 (204)
Q Consensus       161 ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~  192 (204)
                      ||++++.++|+.+.+++..++.+++|.+|+++
T Consensus       188 ea~~l~~~~l~~~~~~~~~~~~~iei~~v~~~  219 (245)
T d1irug_         188 DIVKEVAKIIYIVHDEVKDKAFELELSWVGEL  219 (245)
T ss_dssp             HHHHHHHHHHHHHSCSSSSCCEEEEEEECBTT
T ss_pred             HHHHHHHHHHHHHHhhccCCCceEEEEEEEec
Confidence            99999999999999888777889999999874

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=8.3e-45  Score=287.74  Aligned_cols=185  Identities=13%  Similarity=0.100  Sum_probs=172.8

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|+|.+ +.+...++.+|||+|++|++++++|..+|++.+.+.++.+++.|+.+++++++++
T Consensus        20 ~~G~t~vgi~~~dgVvlaad~r~~-~~~~~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   98 (221)
T d1yara1          20 KKGSTALGMKFANGVLLISDKKVR-SRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIE   98 (221)
T ss_dssp             TTSCCEEEEEETTEEEEEECCCCC-CTTBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             hcCCcEEEEEeCCEEEEEEecccC-CcccccCccceEEEecCCceEEeeeccchHHHHHHHHHHHHHHHHHHcCCcchHH
Confidence            689999999999999999999987 6667788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc--c-cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHH
Q psy1779          84 TFAAIASWELYAR--K-LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPE  160 (204)
Q Consensus        84 ~la~~l~~~l~~~--r-~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~  160 (204)
                      .+++.++.+++..  + ..|||++++|+||+|+  ++|+||++||+|++. +++++|+|+|++.++++||+.|+++||++
T Consensus        99 ~l~~~~a~~~~~~~~~~~~rP~~~~~li~G~d~--~gp~Ly~id~~G~~~-~~~~~a~G~g~~~~~~~Le~~~~~~ms~~  175 (221)
T d1yara1          99 NLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ--IGPRLFDCDPAGTIN-EYKATAIGSGKDAVVSFLEREYKENLPEK  175 (221)
T ss_dssp             HHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS--SCEEEEEECTTCCEE-EBSEEEESTTHHHHHHHHHHHCCTTCCHH
T ss_pred             HHHHHHHHHHHHHhhhccCCCcceEEEEEEEec--CCCeEEEEcCCccEE-EeeEEEECCchHHHHHHHHHHhhccccHH
Confidence            9999999998764  2 2389999999999996  789999999999999 69999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCEEEEEEcCCc
Q psy1779         161 QLFEVCSQVVIQACERDTKSGWGATVYVVEPDK  193 (204)
Q Consensus       161 ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g  193 (204)
                      ||++++.+||+.+.++| .+.++++|++|++++
T Consensus       176 ea~~la~~~l~~~~~~~-~~~~~~ei~~i~~~~  207 (221)
T d1yara1         176 EAVTLGIKALKSSLEEG-EELKAPEIASITVGN  207 (221)
T ss_dssp             HHHHHHHHHHHHTSCSS-CCCCCCEEEEEETTS
T ss_pred             HHHHHHHHHHHHHHhcc-CCCCCcEEEEEEcCC
Confidence            99999999999999887 567799999999754

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-44  Score=289.80  Aligned_cols=191  Identities=17%  Similarity=0.101  Sum_probs=174.7

Q ss_pred             CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779           6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF   85 (204)
Q Consensus         6 g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   85 (204)
                      |+|+|||+++||||||+|+|.+ +.+...++.+|||+|++|++++++|..+|++.+.+.++.+++.|++.++++++++.+
T Consensus        35 g~t~igIk~~dgVVlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l  113 (244)
T d1irua_          35 GLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDML  113 (244)
T ss_dssp             CCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred             CccEEEEEcCCEEEEEEecccc-cccccCCccceEEEecCCcEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCCCchHH
Confidence            4689999999999999999987 455567789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhc--cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCC--CCCCHH
Q psy1779          86 AAIASWELYAR--KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ--PGLSPE  160 (204)
Q Consensus        86 a~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~--~~ms~~  160 (204)
                      ++.++.+++..  +. .|||++++||||||+ +++|+||++||+|++. +++++|+|++++.++++||+.|+  ++|+++
T Consensus       114 a~~l~~~~~~~t~~~~~rP~~v~~ll~G~D~-~~g~~Ly~~Dp~G~~~-~~~~~a~G~gs~~~~~~Le~~~~~~~d~t~e  191 (244)
T d1irua_         114 CKRIADISQVYTQNAEMRPLGCCMILIGIDE-EQGPQVYKCDPAGYYC-GFKATAAGVKQTESTSFLEKKVKKKFDWTFE  191 (244)
T ss_dssp             HHHHHHHHHHHHHBSSBCCCSEEEEEEEEET-TTEEEEEEECTTSCEE-EBSEEEEETTHHHHHHHHHHHTTSCCCCCHH
T ss_pred             HHHHHHHHHHHhcccccCccceeeEEEEEcC-CCCcEEEEEcCCccEE-ecceEeccCchhHHHHHHHhccccccCCCHH
Confidence            99999988653  22 299999999999997 6789999999999999 69999999999999999999994  589999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEec
Q psy1779         161 QLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKIA  200 (204)
Q Consensus       161 ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~~  200 (204)
                      ||++++++||..+.++|. +.++++|++|++++..++.+.
T Consensus       192 eai~l~~~~l~~~~~~d~-~~~~iev~ii~~~~~~~~~l~  230 (244)
T d1irua_         192 QTVETAITCLSTVLSIDF-KPSEIEVGVVTVENPKFRILT  230 (244)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CTTSEEEEEEETTEEEEEECC
T ss_pred             HHHHHHHHHHHHHHhcCC-CCCcEEEEEEEeCCCcEEECC
Confidence            999999999999999995 457899999999987777664

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.9e-44  Score=278.46  Aligned_cols=189  Identities=18%  Similarity=0.256  Sum_probs=181.0

Q ss_pred             CceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779           6 GGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF   85 (204)
Q Consensus         6 g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   85 (204)
                      |||+|||+++||||||+|+|++.|.++.+.+.+|||+|+++++++++|..+|++.+.++++.+++.|+.+++.+++++.+
T Consensus         1 Mt~ivgi~~kdgVviaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~~G~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (199)
T d1iruk_           1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA   80 (199)
T ss_dssp             CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred             CeEEEEEEECCEEEEEECCCccCCCeeecCCcceEEEecCcEEEEecccchHHHHHHHHHHHHhhhhhhhcCCcCcHHHH
Confidence            78999999999999999999999999989999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcc-cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHH
Q psy1779          86 AAIASWELYARK-LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFE  164 (204)
Q Consensus        86 a~~l~~~l~~~r-~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~  164 (204)
                      ++.++..+|.++ ..+|++++++++|+|+ +++|+||.+||.|.+. +.+++++|+|+++++++|++.|+++||++||++
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~~~aG~d~-~~~~~l~~~~~~g~~~-~~~~~a~G~gs~~a~~~l~~~~~~~~~~~ea~~  158 (199)
T d1iruk_          81 ANFTRRNLADCLRSRTPYHVNLLLAGYDE-HEGPALYYMDYLAALA-KAPFAAHGYGAFLTLSILDRYYTPTISRERAVE  158 (199)
T ss_dssp             HHHHHHHHHHHHTSSSCCCEEEEEEEEET-TTEEEEEEECTTCCEE-ECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCcceeeeecceec-cCCceEEeecccceEE-eeeeeeecccchhhhHHHHHhccCCCCHHHHHH
Confidence            999999887753 2379999999999998 7899999999999999 699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779         165 VCSQVVIQACERDTKSGWGATVYVVEPDKVTI  196 (204)
Q Consensus       165 ~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~  196 (204)
                      ++++||+.+.++|+.++++++|++|+++|++.
T Consensus       159 l~~~al~~~~~~d~~sg~~~~v~vv~~~g~~~  190 (199)
T d1iruk_         159 LLRKCLEELQKRFILNLPTFSVRIIDKNGIHD  190 (199)
T ss_dssp             HHHHHHHHHHHTBCBCCCCEEEEEEETTEEEC
T ss_pred             HHHHHHHHHHHhcCCcCCceEEEEEcCCCeEE
Confidence            99999999999999999999999999999875

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-44  Score=290.09  Aligned_cols=188  Identities=14%  Similarity=0.132  Sum_probs=173.0

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHH-hhHHhcCCCCC
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTA-NYVASEQSPIS   81 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~   81 (204)
                      .++|+|+|||+++||||||+|+|.+.+ ++...+.+||++|++|++++++|..+|++.+.++++.+++ .|+..++++++
T Consensus        28 v~~G~tvvgi~~~dgVvlaad~r~~~~-~~~~~~~~ki~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~y~~~~~~~~~  106 (250)
T d1rypb_          28 VKQGVTSLGIKATNGVVIATEKKSSSP-LAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPP  106 (250)
T ss_dssp             HHTSCCEEEEEETTEEEEEEECCCSCS-SBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCC
T ss_pred             HHcCCCEEEEEeCCEEEEEEecccCCc-cccccccceeEeccCCEEEEeeecccHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            368999999999999999999998865 4567889999999999999999999999999999999886 58888999999


Q ss_pred             HHHHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCC
Q psy1779          82 PDTFAAIASWELYAR--KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLS  158 (204)
Q Consensus        82 ~~~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms  158 (204)
                      ++.+++.++++++..  +. .|||++++|+||+|+ +++|+||++||+|++. +++++|+|+|+++++++||+.|+++||
T Consensus       107 ~~~la~~~~~~~~~~~~~~~~rp~~v~~li~G~D~-~~gp~Ly~id~~G~~~-~~~~~a~G~gs~~a~~~Le~~~~~~ms  184 (250)
T d1rypb_         107 TKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDE-FNGFSLYQVDPSGSYF-PWKATAIGKGSVAAKTFLEKRWNDELE  184 (250)
T ss_dssp             HHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEET-TTEEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHHHHHHHHhhhcCCcCeeEEEEEEEecC-CCCCEEEEEcCcEEEE-EeeEEecCcchHHHHHHHHHhcccCCC
Confidence            999999999998543  22 289999999999997 7889999999999999 699999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCce
Q psy1779         159 PEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKV  194 (204)
Q Consensus       159 ~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~  194 (204)
                      ++||++++.+||+.+.++| .++.+++|++|++++.
T Consensus       185 ~eea~~la~~al~~~~~~d-~s~~~iev~vi~~~~~  219 (250)
T d1rypb_         185 LEDAIHIALLTLKESVEGE-FNGDTIELAIIGDENP  219 (250)
T ss_dssp             HHHHHHHHHHHHHHHCCSC-CSTTTEEEEEECSCCG
T ss_pred             HHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEeCCCc
Confidence            9999999999999999999 5788999999999864

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=3.5e-44  Score=287.91  Aligned_cols=190  Identities=15%  Similarity=0.102  Sum_probs=173.9

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|+|.+.+.+ ...+.+|||+|++|++++++|..+|++.+.+.++.+++.|+..++++++++
T Consensus        29 ~~G~t~Igik~~dgVvlaad~r~~~~~~-~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~  107 (243)
T d1j2pa_          29 KRGATAIGIKCKEGVILIADKRVGSKLL-EKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVK  107 (243)
T ss_dssp             HTSCCEEEEEETTEEEEEEECCCSCTTB-CGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred             HcCCCEEEEEECCEEEEEEecCccccCc-cccccccEeecCCcEEEEeeecccHHHHHHHHHHHHHHHHHHhhCCCCcHH
Confidence            5899999999999999999999998765 457789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHH
Q psy1779          84 TFAAIASWELYAR--KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPE  160 (204)
Q Consensus        84 ~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~  160 (204)
                      .+++.++.+++..  +. .|||++++|+||+|.   +|+||++||+|++. +++++|+|+|++.++++||+.|+++||++
T Consensus       108 ~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~D~---~p~Ly~~Dp~G~~~-~~~~~a~G~g~~~a~~~Le~~y~~~ms~e  183 (243)
T d1j2pa_         108 ELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNE---VPKLYETDPSGALL-EYKATAIGMGRMAVTEFFEKEYRDDLSFD  183 (243)
T ss_dssp             HHHHHHHHHHHHTTSBTTBCCCCEEEEEEEESS---SEEEEEECTTCCEE-EBSEEEESTTHHHHHHHHHHHCCTTCCHH
T ss_pred             HHHHHHHHHHHHHhhhccCCccceeEEEEEecC---CceEEEEeccCcee-eeeEEEeCCCcHHHHHHHHhhcccCCCHH
Confidence            9999999999764  22 389999999999984   59999999999999 69999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEEEEe
Q psy1779         161 QLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTIRKI  199 (204)
Q Consensus       161 ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~~~~  199 (204)
                      ||++++++||+.+.++|.. .++++|+++++++..++.+
T Consensus       184 eai~la~~~l~~~~~~d~~-~~~iei~iv~~~~~~~~~l  221 (243)
T d1j2pa_         184 DAMVLGLVAMGLSIESELV-PENIEVGYVKVDDRTFKEV  221 (243)
T ss_dssp             HHHHHHHHHHHHHHTSCCC-GGGEEEEEEETTTCCCEEC
T ss_pred             HHHHHHHHHHHHHHhcccC-CCceEEEEEEeCCCcEEEC
Confidence            9999999999999999954 5699999999875444444

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-44  Score=288.31  Aligned_cols=188  Identities=15%  Similarity=0.141  Sum_probs=173.1

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|+|.+.+ +...++.+|||+|+++++++++|..+|++.+.++++.+++.|++.++++++++
T Consensus        24 ~~G~t~Vgi~~~dgVvla~d~r~~~~-~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~  102 (242)
T d1rype_          24 KLGSTAIGIATKEGVVLGVEKRATSP-LLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVE  102 (242)
T ss_dssp             TTSCCEEEEECSSCEEEEEECCCSST-TBCGGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             HcCCCEEEEEeCCEEEEEEeCCccCc-CcccCccceEEEcCCCEEEEEeecchhHHHHHHHHHHHHHHHHHHcCCCCchh
Confidence            68999999999999999999999876 56677889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc--------cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCC
Q psy1779          84 TFAAIASWELYAR--------KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ  154 (204)
Q Consensus        84 ~la~~l~~~l~~~--------r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~  154 (204)
                      .++++++++++..        +. .|||++++||||+|+ +++|+||.+||+|++. +++++|+|+|++.++++||+.|+
T Consensus       103 ~l~~~l~~~~~~~~~~~~~~~~~~~rP~~~~~ii~G~D~-~~~p~L~~idp~G~~~-~~~~~a~G~gs~~~~~~Le~~~~  180 (242)
T d1rype_         103 SLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDA-DDGYQLFHAEPSGTFY-RYNAKAIGSGSEGAQAELLNEWH  180 (242)
T ss_dssp             HHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEET-TTEEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhccccccchhccccceEEEEEEEecc-ccceEEEEEcCCCcee-ccceeecccchHHHHHHHHHhcc
Confidence            9999999987632        11 289999999999998 7889999999999999 69999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcC-CceE
Q psy1779         155 PGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP-DKVT  195 (204)
Q Consensus       155 ~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~-~g~~  195 (204)
                      ++||++||++++++||+.+.++|. +.++++|++|++ +|++
T Consensus       181 ~~ms~~ea~~la~~~l~~~~~~~~-~~~~~~v~~i~~~~g~~  221 (242)
T d1rype_         181 SSLTLKEAELLVLKILKQVMEEKL-DENNAQLSCITKQDGFK  221 (242)
T ss_dssp             TTCCHHHHHHHHHHHHHHHCSSCC-CTTSEEEEEEETTTEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHhccC-CCCceEEEEEECCCCeE
Confidence            999999999999999999999885 556899999986 5654

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.2e-44  Score=285.95  Aligned_cols=186  Identities=14%  Similarity=0.163  Sum_probs=171.6

Q ss_pred             CCCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCH
Q psy1779           3 LNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISP   82 (204)
Q Consensus         3 ~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~   82 (204)
                      .++|+|+|||+++||||||+|++.+.+. +..++.+|||+|++|++++++|..+|++.+.+.++.+++.|+.++++++++
T Consensus        24 v~~G~t~vgik~~dgVvlaad~~~~~~~-~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~  102 (234)
T d1irue_          24 IKLGSTAIGIQTSEGVCLAVEKRITSPL-MEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTV  102 (234)
T ss_dssp             HTTSCCEEEEEETTEEEEEEECCCCCTT-BCTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HHcCCCEEEEEeCCEEEEEEecCccCCC-cccCcccCEEEccCcEEEEEeeccchHHHHHHHHHHHHHHHHHhhCCCCCH
Confidence            3689999999999999999999998765 446788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhc--c------cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCC
Q psy1779          83 DTFAAIASWELYAR--K------LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ  154 (204)
Q Consensus        83 ~~la~~l~~~l~~~--r------~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~  154 (204)
                      +.++++++.++|..  +      ..|||++++|+||+|+  ++|+||++||+|++. +++++|+|+|++.++++||+.|+
T Consensus       103 ~~la~~i~~~~~~~t~~~~~~~~~~rP~~~~~il~G~D~--~gp~Ly~idp~G~~~-~~~~~a~G~gs~~~~~~Le~~~~  179 (234)
T d1irue_         103 ESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE--KGPQLFHMDPSGTFV-QCDARAIGSASEGAQSSLQELYH  179 (234)
T ss_dssp             HHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET--TEEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhhcccccccccccceEEEEEEEEcC--CCCEEEEEecCcccc-eeeeEEeCCchHHHHHHHHHhhc
Confidence            99999999998642  1      1289999999999996  789999999999999 69999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCc
Q psy1779         155 PGLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK  193 (204)
Q Consensus       155 ~~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g  193 (204)
                      ++|+++||++++++||+.+.++| .++++++|++|+++.
T Consensus       180 ~~~~~eeai~~a~~al~~~~~~~-~~~~~iei~ii~~~~  217 (234)
T d1irue_         180 KSMTLKEAIKSSLIILKQVMEEK-LNATNIELATVQPGQ  217 (234)
T ss_dssp             TTCCHHHHHHHHHHHHHHHCSSC-CCTTSEEEEEECSSS
T ss_pred             cCCCHHHHHHHHHHHHHHHHhcc-CCCCCEEEEEEECCC
Confidence            99999999999999999998887 567799999999864

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.2e-44  Score=286.88  Aligned_cols=188  Identities=16%  Similarity=0.069  Sum_probs=173.1

Q ss_pred             CCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHH
Q psy1779           5 DGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDT   84 (204)
Q Consensus         5 ~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (204)
                      .|+|+|||+++||||||+|+|.+. .++..++.+||++|++|++++++|..+|++.+.+.++.+++.|++.++++++++.
T Consensus        29 ~g~T~igik~~dgVvlaad~r~~~-~l~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~  107 (243)
T d1rypa_          29 TNINSLAVRGKDCTVVISQKKVPD-KLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDV  107 (243)
T ss_dssp             TCCCEEEEECSSEEEEEEECCCCC-TTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred             cCceEEEEEcCCEEEEEEeccccc-cccccCcccceEecCCCEEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            467999999999999999999875 6677888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhc--c-cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCC------
Q psy1779          85 FAAIASWELYAR--K-LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP------  155 (204)
Q Consensus        85 la~~l~~~l~~~--r-~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~------  155 (204)
                      +++.++++++..  + ..|||++++|+||||+ +++|+||++||+|++. +++++|+|+|+..++++||++|++      
T Consensus       108 ~a~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~-~~g~~Ly~~Dp~G~~~-~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~  185 (243)
T d1rypa_         108 LAKRMANLSQIYTQRAYMRPLGVILTFVSVDE-ELGPSIYKTDPAGYYV-GYKATATGPKQQEITTNLENHFKKSKIDHI  185 (243)
T ss_dssp             HHHHHHHHHHHHHHBTTSCCCSCEEEEEEEET-TTEEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHHHHHHHCSSSC
T ss_pred             HHHHHHHHHHHHhhcccccCccceEEEEEEcc-CCCCeEEEEcCCEEEE-ecceEEeCccHHHHHHHHHHHhhccccccc
Confidence            999999988654  2 2389999999999998 7899999999999999 699999999999999999999874      


Q ss_pred             -CCCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779         156 -GLSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTI  196 (204)
Q Consensus       156 -~ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~  196 (204)
                       ++|++||++++.++|+.+.++|. ++.+++|++++++|++.
T Consensus       186 ~~~s~eeav~la~~~l~~~~~~d~-~~~~iei~iitk~g~~~  226 (243)
T d1rypa_         186 NEESWEKVVEFAITHMIDALGTEF-SKNDLEVGVATKDKFFT  226 (243)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHTCCC-CTTSEEEEEEETTEEEE
T ss_pred             ccccHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEeCCceEE
Confidence             56999999999999999999995 67899999999998653

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-43  Score=282.89  Aligned_cols=186  Identities=18%  Similarity=0.238  Sum_probs=172.7

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|++.+.+......+.+|||+|++|+++++||..+|++.+.+.++.+++.|+++++++++++
T Consensus        26 ~~G~tvIgik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~  105 (241)
T d1rypd_          26 KRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVE  105 (241)
T ss_dssp             TTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             HcCCCEEEEEeCCEEEEEEEccccccCcccccccccEEEeCCCEEEEeeeccchHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence            68999999999999999999999998888788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCC---CC
Q psy1779          84 TFAAIASWELYAR--KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQP---GL  157 (204)
Q Consensus        84 ~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~---~m  157 (204)
                      .++++++.+++..  +. .|||+|++|+||+|+.+++|+||++||+|++. +++++|+|+|++.++++||+.|++   +|
T Consensus       106 ~la~~i~~~~~~~t~~~~~rP~~v~~li~G~d~~~~~p~Ly~idp~G~~~-~~~~~a~G~gs~~~~~~Le~~~~~~~~~~  184 (241)
T d1rypd_         106 YLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYS-SWSAQTIGRNSKTVREFLEKNYDRKEPPA  184 (241)
T ss_dssp             HHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHTTCCTTSCCC
T ss_pred             HHHHHHHHHHHHHhhccccCcccceEEEEEEccccCcceEEEecCCEEEE-eeCeEEECcCHHHHHHHHHHhhhcccCCC
Confidence            9999999998765  22 28999999999999745789999999999999 699999999999999999999964   69


Q ss_pred             CHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCc
Q psy1779         158 SPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK  193 (204)
Q Consensus       158 s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g  193 (204)
                      |.+|+++++++||+.+.+++   +.+++|+++++++
T Consensus       185 t~~e~i~lal~al~~~~~~~---~~~iei~ii~~d~  217 (241)
T d1rypd_         185 TVEECVKLTVRSLLEVVQTG---AKNIEITVVKPDS  217 (241)
T ss_dssp             SHHHHHHHHHHHHHHHHCSC---STTEEEEEEETTT
T ss_pred             CHHHHHHHHHHHHHHHhcCC---CCcEEEEEEECCC
Confidence            99999999999999988654   6799999999986

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-43  Score=281.19  Aligned_cols=185  Identities=12%  Similarity=0.093  Sum_probs=171.7

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|++.+++.   ..+.+|||+|++|++|++||..+|++.+.++++.+++.|++.++++++++
T Consensus        29 ~~g~t~igi~~~dgvvlaad~~~~~~l---~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~  105 (233)
T d1rypf_          29 KQGSVTVGLRSNTHAVLVALKRNADEL---SSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVE  105 (233)
T ss_dssp             HTSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HcCCCEEEEEECCeEEEEEeccccccC---CcchheEEEcCCCEEEEEeeccccHHHHHHHHHHHHHhhhhhcCCCCcHH
Confidence            589999999999999999999998653   46789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc--c-cCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhcc----CCCC
Q psy1779          84 TFAAIASWELYAR--K-LTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESF----WQPG  156 (204)
Q Consensus        84 ~la~~l~~~l~~~--r-~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~----~~~~  156 (204)
                      .+++.++++++..  . ..|||++++|+||+|+  ++|+||++||+|++. +++++|+|+|++.++++||+.    |+++
T Consensus       106 ~la~~l~~~~~~~t~~~~~RP~gv~~il~G~d~--~g~~Ly~idp~G~~~-~~~~~aiG~gs~~a~~~Le~~~~~~~~~d  182 (233)
T d1rypf_         106 RAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK--SGAHLLEFQPSGNVT-ELYGTAIGARSQGAKTYLERTLDTFIKID  182 (233)
T ss_dssp             HHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET--TEEEEEEECTTSCEE-EESEEEESTTHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHhcccccCCccceEEEEEEcC--CCCEEEEEcccccee-cccEEEecCchHHHHHHHHHHHhhccccC
Confidence            9999999998654  2 2389999999999996  689999999999999 699999999999999999875    4689


Q ss_pred             CCHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCce
Q psy1779         157 LSPEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDKV  194 (204)
Q Consensus       157 ms~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~  194 (204)
                      |+++||++++++||..+.++|..++++++|++|++++.
T Consensus       183 ms~eeai~l~~~~l~~~~~~d~~~~~~iev~ii~k~~~  220 (233)
T d1rypf_         183 GNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTP  220 (233)
T ss_dssp             SCHHHHHHHHHHHHTTSCCSSCCCTTTEEEEEEETTEE
T ss_pred             CCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEECCCC
Confidence            99999999999999999999999999999999999864

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.9e-43  Score=280.72  Aligned_cols=188  Identities=14%  Similarity=0.120  Sum_probs=175.7

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|+|.+.+.+ ..++.+|||+|++|++++++|..+|++.+.+.++.+++.|+.+++++++++
T Consensus        29 ~~G~tvigik~~dgVvlaaD~r~~~~~~-~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~  107 (233)
T d1irub_          29 AGGAPSVGIKAANGVVLATEKKQKSILY-DERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTA  107 (233)
T ss_dssp             HTSCCEEEEECSSCEEEEEECCCCCSSB-CSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             HcCCCEEEEEeCCEEEEEEeCCcccCCc-cccccceEEEecCceEEEEeccchHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            5899999999999999999999988765 578899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc--c-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHH
Q psy1779          84 TFAAIASWELYARK--L-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPE  160 (204)
Q Consensus        84 ~la~~l~~~l~~~r--~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~  160 (204)
                      .+++.++..++.+.  . .||++++++++|+|+  ++|+||.+||.|++. +++++|+|+|+++++++||+.|+++||++
T Consensus       108 ~~~~~l~~~~~~~~~~~~~~p~~~~~li~g~d~--~~~~ly~id~~G~~~-~~~~~a~G~gs~~~~~~Le~~~~~~ms~e  184 (233)
T d1irub_         108 QLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE--GRPYLFQSDPSGAYF-AWKATAMGKNYVNGKTFLEKRYNEDLELE  184 (233)
T ss_dssp             HHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS--SSEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHHHCCTTCCHH
T ss_pred             HHHHHHHHHHHHHhhccccccceEEEeeeeccc--CCceEEEEcCCcceE-eccceecCCcHHHHHHHHHhhcccCccHH
Confidence            99999999987542  1 289999999999985  899999999999999 69999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccCCCEEEEEEcCCceEE
Q psy1779         161 QLFEVCSQVVIQACERDTKSGWGATVYVVEPDKVTI  196 (204)
Q Consensus       161 ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g~~~  196 (204)
                      ||++++.+||+.+.++|. ++++++|++++++|++.
T Consensus       185 ea~~l~~~~L~~~~~~d~-~~~~vev~ii~~~g~~~  219 (233)
T d1irub_         185 DAIHTAILTLKESFEGQM-TEDNIEVGICNEAGFRR  219 (233)
T ss_dssp             HHHHHHHHHHHTTCCSCC-CSSSEEEEEEETTEEEE
T ss_pred             HHHHHHHHHHHHHHhccC-CCCcEEEEEEeCCCeEE
Confidence            999999999999999996 56789999999999764

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.4e-43  Score=280.26  Aligned_cols=184  Identities=16%  Similarity=0.210  Sum_probs=170.5

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|++.+.+... ....+||++|++|++++.+|..+|++.+.+.++.+++.|++.++++++++
T Consensus        28 ~~G~t~igik~~dgVvlaad~~~~~~~~~-~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~  106 (244)
T d1rypg_          28 ENGTTSIGIKCNDGVVFAVEKLITSKLLV-PQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIP  106 (244)
T ss_dssp             HTSCCEEEEEETTEEEEEEEEECCCTTBC-TTTSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             HcCCCEEEEEeCCEEEEEEecccCCCCcc-ccccceEEEccCceEEEEccchhhHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence            57999999999999999999999988655 55678999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhc---cCCCCC
Q psy1779          84 TFAAIASWELYAR--KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGES---FWQPGL  157 (204)
Q Consensus        84 ~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~---~~~~~m  157 (204)
                      .+++.++.+++..  .. .|||++++|+||||+  ++|+||++||+|++. +++++|+|+|+..++++||+   .|+++|
T Consensus       107 ~la~~~~~~~~~~t~~~~~RP~~~~~iiaG~D~--~gp~Ly~idp~Gs~~-~~~~~a~G~gs~~~~~~Lek~~~~~~~~m  183 (244)
T d1rypg_         107 AFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK--NGAHLYMLEPSGSYW-GYKGAATGKGRQSAKAELEKLVDHHPEGL  183 (244)
T ss_dssp             HHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET--TEEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHHHHhhcccccCCceEEEEEEEEeC--CCCEEEEEcCCccEE-ecCeEecCCccHHHHHHHHHHHhhCCCCC
Confidence            9999999998764  22 389999999999996  799999999999999 69999999999999999996   699999


Q ss_pred             CHHHHHHHHHHHHHHHHhhccccCCCEEEEEEcC
Q psy1779         158 SPEQLFEVCSQVVIQACERDTKSGWGATVYVVEP  191 (204)
Q Consensus       158 s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~  191 (204)
                      |++||+++++++|..+.+++..++.+++|.+|+.
T Consensus       184 t~eeai~la~~~L~~~~~~~~~~~~~iev~ii~~  217 (244)
T d1rypg_         184 SAREAVKQAAKIIYLAHEDNKEKDFELEISWCSL  217 (244)
T ss_dssp             CHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEET
T ss_pred             CHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEE
Confidence            9999999999999999998877788899999964

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.1e-43  Score=279.45  Aligned_cols=184  Identities=11%  Similarity=0.067  Sum_probs=168.4

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|++.+++..   .+.+|||+|++++++++||..+|++.+++.++.+++.|+++++++++++
T Consensus        27 ~~G~t~vgik~~dgVvlaad~~~~~~~~---~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~  103 (238)
T d1iruf_          27 KQGSATVGLKSKTHAVLVALKRAQSELA---AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVS  103 (238)
T ss_dssp             HHSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             hcCCCEEEEEeCCEEEEEEecccccCCC---CccceEEEeCCceEEEEeccchHHHHHHHHHHHHHHHHHHHcCCCcchH
Confidence            5799999999999999999999987753   3568999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH--Hhccc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCC--C
Q psy1779          84 TFAAIASWEL--YARKL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL--S  158 (204)
Q Consensus        84 ~la~~l~~~l--~~~r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~m--s  158 (204)
                      .+++.++.+.  |+++. .|||++++|+||||+  ++|+||++||+|++. +++++|+|++++.++++||+.|+++|  +
T Consensus       104 ~l~~~l~~~~~~y~~~~~~rP~~v~~il~G~D~--~gp~Ly~~D~~G~~~-~~~~~a~G~g~~~~~~~Lek~~~~~~~~~  180 (238)
T d1iruf_         104 RLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD--MGPHIFQTCPSANYF-DCRAMSIGARSQSARTYLERHMSEFMECN  180 (238)
T ss_dssp             HHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET--TEEEEEEECSSSCEE-EESEEEESTTHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHhhccCCCcccceEEEEEEcC--CCceEEEEcCCCCEE-eeeeEEECCCchhhHHHHHhhcccccCCC
Confidence            9999999985  44444 389999999999996  789999999999999 69999999999999999999999855  9


Q ss_pred             HHHHHHHHHHHHHHHHhhcc-ccCCCEEEEEEcCCc
Q psy1779         159 PEQLFEVCSQVVIQACERDT-KSGWGATVYVVEPDK  193 (204)
Q Consensus       159 ~~ea~~~~~~~l~~~~~~d~-~~~~~~~v~~i~~~g  193 (204)
                      ++||++++++||+.+..++. .++.+++|++|++++
T Consensus       181 ~~eav~lai~al~~~~~~~~~~~~~~iev~ii~k~~  216 (238)
T d1iruf_         181 LNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDL  216 (238)
T ss_dssp             HHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTE
T ss_pred             HHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEeCCC
Confidence            99999999999998886553 578899999999985

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=4.2e-42  Score=272.24  Aligned_cols=191  Identities=16%  Similarity=0.168  Sum_probs=175.9

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      ||+|||+++||||||+|+|.++|.++...+.+||++|++|++++++|..+|++.+.+.++.+++.|+++++.+++++.++
T Consensus         1 TTivgi~~kdgVvlaaD~r~s~g~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T d1q5qh_           1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA   80 (224)
T ss_dssp             CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEeecCCcceEEEeCCcEEEEecccchHHHHHHHHHHHHhHHHHHhhCCCccHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc--cCCCceeeEEEEEEeC----CCCceEEEEEcCCCCeee-ecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779          87 AIASWELYARK--LTSPLFINPIIAGFYP----DSGEVFLSTLDMAGCETR-KTDFVAGGSAQNMIMGIGESFWQPGLSP  159 (204)
Q Consensus        87 ~~l~~~l~~~r--~~~P~~v~~lvaG~d~----~~~~p~Ly~id~~G~~~~-~~~~~a~G~g~~~~~~~Le~~~~~~ms~  159 (204)
                      +++++++|.++  ..+|+++.++++|++.    .+++|+||.+||+|+... ..+|+|+|+|+++++++||+.|+++||.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~d~~~~~~l~~~d~~G~~~~~~~~~~a~GsG~~~a~~~Le~~~~~~mt~  160 (224)
T d1q5qh_          81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDE  160 (224)
T ss_dssp             HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred             HHHHHHHHHhhcccccCccceeeEEEeecccccccCCceEEEEEccCcEEEeccceeeecCccHHHHHHHHHhhcccCCH
Confidence            99999998762  2389999999998873    146899999999999762 2478999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCC-------EEEEEEcCCceEEE
Q psy1779         160 EQLFEVCSQVVIQACERDTKSGWG-------ATVYVVEPDKVTIR  197 (204)
Q Consensus       160 ~ea~~~~~~~l~~~~~~d~~~~~~-------~~v~~i~~~g~~~~  197 (204)
                      +||++++++||+.+.+||..||+.       +++++++++|++..
T Consensus       161 ~ea~~l~~~al~~a~~rD~~SGg~~~~~~~~~~~~~i~~~g~~~l  205 (224)
T d1q5qh_         161 ETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAGAVHV  205 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTEEEEC
T ss_pred             HHHHHHHHHHHHHHHhhccccCCcccccccceEEEEEeCCcEEEc
Confidence            999999999999999999998864       89999999998753

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.7e-43  Score=279.44  Aligned_cols=184  Identities=15%  Similarity=0.197  Sum_probs=167.2

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPD   83 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (204)
                      ++|+|+|||+++||||||+|+|.+ +.++..++.+|||+|++|++|++||..+|++.+.+.++.+++.|+++++.+++++
T Consensus        26 ~~G~Tvvgik~~dgVvla~d~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~v~  104 (243)
T d1irud_          26 KKGSTAVGVRGRDIVVLGVEKKSV-AKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVE  104 (243)
T ss_dssp             HTSCCEEEECCSSEEEEEECCCCC-CSSSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred             hcCCCEEEEEeCCEEEEEEecccc-CcccCCCccccEEECCCCEEEEEEEchhhHHHHHHHHHHHHHHHHHhcCCCccHH
Confidence            589999999999999999999965 7788889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc--cc-CCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCC--C
Q psy1779          84 TFAAIASWELYAR--KL-TSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL--S  158 (204)
Q Consensus        84 ~la~~l~~~l~~~--r~-~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~m--s  158 (204)
                      .++++++++++..  +. .|||++++|++|+|+ +++|+||++||+|++. +++++|+|+|++.++++||+.|+++|  +
T Consensus       105 ~la~~ls~~~~~~t~~~~~rp~~v~~li~G~D~-~~~p~Ly~idp~G~~~-~~~~~a~G~gs~~a~~~Lek~~~~~~~~~  182 (243)
T d1irud_         105 YITRYIASLKQRYTQSNGRRPFGISALIVGFDF-DGTPRLYQTDPSGTYH-AWKANAIGRGAKSVREFLEKNYTDEAIET  182 (243)
T ss_dssp             HHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECS-SSCEEEEEECTTSCEE-EBSEEEESTTHHHHHHHHTTTCCSSTTCS
T ss_pred             HHHHHHHHHHHHHHhcccCCccceEEEEEEEcC-CCCCEEEEecCcEEEE-eccEEEECCChHHHHHHHHHhcccCCCcc
Confidence            9999999998653  22 389999999999997 6799999999999999 69999999999999999999999998  6


Q ss_pred             HHHHHHHHHHHHHHHHhhccccCCCEEEEEEcCCc
Q psy1779         159 PEQLFEVCSQVVIQACERDTKSGWGATVYVVEPDK  193 (204)
Q Consensus       159 ~~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~~~g  193 (204)
                      .++++++++++|....   ..++.+++|++|++++
T Consensus       183 ~~~~i~~ai~~l~~~~---~~~~~~vei~ii~k~~  214 (243)
T d1irud_         183 DDLTIKLVIKALLEVV---QSGGKNIELAVMRRDQ  214 (243)
T ss_dssp             HHHHHHHHHHHHHTTS---CTTSTTCCEEEEESSS
T ss_pred             HHHHHHHHHHHHHHHh---cCCCCcEEEEEEECCC
Confidence            6778888777776554   3457799999999873

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=5.9e-42  Score=272.17  Aligned_cols=187  Identities=13%  Similarity=0.093  Sum_probs=159.8

Q ss_pred             CCCceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcC-CCCCH
Q psy1779           4 NDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQ-SPISP   82 (204)
Q Consensus         4 ~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~~~~   82 (204)
                      ++|+|+|||+|+||||||+|+|.+        +.+|||+|++||+|+++|..+|++.|.++++.+++.|+++++ .++++
T Consensus        17 ~~GtT~vgi~~~~GVvlaad~r~~--------s~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~~~~~   88 (227)
T d1q5qa_          17 ARGRSVVVLTFRDGVLFVAENPST--------ALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTG   88 (227)
T ss_dssp             HTSCCEEEEECSSEEEEEECCSCS--------SSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCH
T ss_pred             hcCCCEEEEEECCEEEEEEccCCC--------CcceEEEecCceEEEecCchHHHHHHHHHHHHHHHHHHHHhCCCCCcH
Confidence            579999999999999999999854        468999999999999999999999999999999999999988 56899


Q ss_pred             HHHHHHHHHHHH---hcccCCCceeeEEEEEEeCC--CCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCC
Q psy1779          83 DTFAAIASWELY---ARKLTSPLFINPIIAGFYPD--SGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGL  157 (204)
Q Consensus        83 ~~la~~l~~~l~---~~r~~~P~~v~~lvaG~d~~--~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~m  157 (204)
                      +.+++.+++++.   .++. |||++++|+||||..  +++|+||++||+|++.+...+++.|++++.++++|++.|+++|
T Consensus        89 ~~la~~~~~~~~~~~~~~~-rP~gvs~lvaG~D~~g~~~~p~Ly~vDpsG~~~~~~~~~~~g~~s~~~~~~Le~~y~~~m  167 (227)
T d1q5qa_          89 RSLANAYAQTLGTIFTEQP-KPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADL  167 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHSS-SCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHHHHHHHHhcC-CCceEEEEEEEEecCCCCCCCEEEEEccccceeeecccccCCCchHHHHHHHHHhccCCC
Confidence            999999998753   3344 899999999999962  3579999999999988333456677889999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhhcc----ccCCCEEEEEEcCCce--EEEEe
Q psy1779         158 SPEQLFEVCSQVVIQACERDT----KSGWGATVYVVEPDKV--TIRKI  199 (204)
Q Consensus       158 s~~ea~~~~~~~l~~~~~~d~----~~~~~~~v~~i~~~g~--~~~~~  199 (204)
                      |++||++++++||+.+.++|.    .++.+++|++++++|.  .++.+
T Consensus       168 s~eea~~la~~aL~~a~~~d~~~~~~~~~~ievavi~k~~~~~~fr~l  215 (227)
T d1q5qa_         168 DLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRI  215 (227)
T ss_dssp             CHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCEEEC
T ss_pred             CHHHHHHHHHHHHHHHhhcccccCCcCcceEEEEEEECCCCccceEEc
Confidence            999999999999999998875    3467899999999874  34444

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

Probab=99.96  E-value=2.8e-30  Score=197.35  Aligned_cols=178  Identities=17%  Similarity=0.108  Sum_probs=132.6

Q ss_pred             CCCCCceEEEEEeCCEEEEEEecccccCceeeec-CCCeEEEeeCc-EEEEecCChHHHHHHHHHHHHHHHhhHHhcCCC
Q psy1779           2 SLNDGGAIVAMAGKNCFAIGVDHLLVQGDFTIAE-YENKVHQMSPH-LYLINPGLCADGMQFAEKMTLRTANYVASEQSP   79 (204)
Q Consensus         2 ~~~~g~t~igi~~~dgVvlaad~~~~~~~~~~~~-~~~Ki~~i~~~-i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~   79 (204)
                      ++.+|||+|||+|+||||||+|+|.|.|+++..+ ..+|+++++++ ++++.+|..+|.+.+.+.++.+.+.++.....+
T Consensus         1 ~~~~GTTivai~~~dGVvlAaDtR~S~G~~i~~~~~~~ki~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (180)
T d2z3ba1           1 SSFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRA   80 (180)
T ss_dssp             CCBCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             CCCCCeEEEEEEECCEEEEEECCcccCCceeEecccceEEEEecccceecccchHHHHHHHHHHHHHHHHHhhccccchh
Confidence            4789999999999999999999999999887765 57889999875 888899999999999998887766543322111


Q ss_pred             CCHHHHHHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCH
Q psy1779          80 ISPDTFAAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSP  159 (204)
Q Consensus        80 ~~~~~la~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~  159 (204)
                      +..  .+.......+.++...++.....        .++.++..++.+... ..+|.|+|+|+.+++++|++.|+++||.
T Consensus        81 ~~~--~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~a~GSGs~~A~g~l~~~~~~~~s~  149 (180)
T d2z3ba1          81 AVE--LAKEWRSDKVLRKLEAMLIVMNQ--------DTLLLVSGTGEVIEP-DDGILAIGSGGNYALAAGRALKKHAGES  149 (180)
T ss_dssp             HHH--HHHHHHHCTTGGGCCCCEEEECS--------SCEEEECTTCCEECC-SSSEEEESTTHHHHHHHHHHHHHHHGGG
T ss_pred             HHH--HHHHHhHHHHHHHhhcceeeeec--------cccccccCCceeecc-cccEEEEcCchHHHHHHHHHHhhcCCCc
Confidence            111  11111111111111123333222        345555555555555 4678899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccCCCEEEEEEc
Q psy1779         160 EQLFEVCSQVVIQACERDTKSGWGATVYVVE  190 (204)
Q Consensus       160 ~ea~~~~~~~l~~~~~~d~~~~~~~~v~~i~  190 (204)
                      +||++++.+||+.|.++|+.++++++|.+|.
T Consensus       150 ~eA~~l~~~Al~~A~e~dvyT~~~~~~~~i~  180 (180)
T d2z3ba1         150 MSASEIARAALETAGEICVYTNDQIILEELE  180 (180)
T ss_dssp             CCHHHHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred             cCHHHHHHHHHHHHHhhcEEcCCcEEEEEeC
Confidence            9999999999999999999999999998773

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=4.6e-27  Score=177.67  Aligned_cols=170  Identities=11%  Similarity=0.020  Sum_probs=133.3

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCcEEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPHLYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTFA   86 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la   86 (204)
                      ||+|||+++||||||+|+|.|.|+++.+++.+||++|+++++++.+|..+|.+.+......+...+...     ......
T Consensus         1 TTivav~~~~gVviAaDtR~S~G~~i~~r~~~Ki~~i~~~~~~~~~g~~ad~~~~~~~~~~~~~~~~~~-----~~~~~~   75 (171)
T d1m4ya_           1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGG-----NLTKAA   75 (171)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT-----CHHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEecCCcEEEEEeechhhHHHHHHHHHHHHHHhhc-----cchhhH
Confidence            799999999999999999999999999999999999999999999999999999887766655443321     122222


Q ss_pred             HHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCC-CCCCHHHHHHH
Q psy1779          87 AIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQ-PGLSPEQLFEV  165 (204)
Q Consensus        87 ~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~-~~ms~~ea~~~  165 (204)
                      ...+..+...+  .++....++.+.+  .++|+++..|+.|... ..++.|+|+|+.++++.|+..++ ++|+   |.++
T Consensus        76 ~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~d~~g~~~-~~~~~a~GSGs~~A~g~l~~~~~~~~~~---a~el  147 (171)
T d1m4ya_          76 VELAKDWRTDR--VLRRLEALLLVAD--KENIFIISGNGEVIQP-DDDAAAIGSGGPYALAAAKALLRNTDLS---AREI  147 (171)
T ss_dssp             HHHHHHHHHCT--TGGGCCCEEEEEC--SSCEEEECTTSCEECC-SSSEEEESTTHHHHHHHHHHHHHHCCCC---HHHH
T ss_pred             HHHHHHHHHhh--hhcccccccceec--CCcceEEecCCceeee-cCCEEEEcchHHHHHHHHHhhccCCCCC---HHHH
Confidence            22222222221  1122223344455  4899999999999988 68999999999999999998765 5776   7778


Q ss_pred             HHHHHHHHHhhccccCCCEEEEEE
Q psy1779         166 CSQVVIQACERDTKSGWGATVYVV  189 (204)
Q Consensus       166 ~~~~l~~~~~~d~~~~~~~~v~~i  189 (204)
                      +++||+.|.++|+.++++++|..|
T Consensus       148 ~~~Ai~~A~e~dvyTg~~~~i~~~  171 (171)
T d1m4ya_         148 VEKAMTIAGEICIYTNQNIVIEEV  171 (171)
T ss_dssp             HHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred             HHHHHHHHHhhceEcCCcEEEEEC
Confidence            999999999999999999988754

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

Probab=99.94  E-value=6.6e-27  Score=177.22  Aligned_cols=171  Identities=11%  Similarity=0.022  Sum_probs=130.3

Q ss_pred             ceEEEEEeCCEEEEEEecccccCceeeecCCCeEEEeeCc-EEEEecCChHHHHHHHHHHHHHHHhhHHhcCCCCCHHHH
Q psy1779           7 GAIVAMAGKNCFAIGVDHLLVQGDFTIAEYENKVHQMSPH-LYLINPGLCADGMQFAEKMTLRTANYVASEQSPISPDTF   85 (204)
Q Consensus         7 ~t~igi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~-i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l   85 (204)
                      ||+|||+|+||||||+|+|++.|.++.+++.+||++|+++ ++++.+|...+.+.+.+..+.+.+.+      +......
T Consensus         1 TTivai~~~dGVVlAaDtRaS~G~~i~~r~~~Ki~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~   74 (173)
T d1g3ka_           1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMH------QGHLLKS   74 (173)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHT------TTCHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEeEcCCcceEEEecCCcEEEEeeehhHhHHHHHHHHHHHHHhh------cCcchhH
Confidence            7999999999999999999999999999999999999887 56666777777666665444333222      2233334


Q ss_pred             HHHHHHHHHhcccCCCceeeEEEEEEeCCCCceEEEEEcCCCCeeeecceEEEccchhhHHHhhhccCCCCCCHHHHHHH
Q psy1779          86 AAIASWELYARKLTSPLFINPIIAGFYPDSGEVFLSTLDMAGCETRKTDFVAGGSAQNMIMGIGESFWQPGLSPEQLFEV  165 (204)
Q Consensus        86 a~~l~~~l~~~r~~~P~~v~~lvaG~d~~~~~p~Ly~id~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~~  165 (204)
                      +..+...++..+. .+.....+ .+.+. +++|.++..|+.|.+. +.++.|+|+|+.++++.|+.+++  ++.+||.++
T Consensus        75 ~~~~~~~~~~~~~-~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~-~~~~~a~GSGs~~A~~~l~~~~~--~~~~~A~el  148 (173)
T d1g3ka_          75 AVELAKDWRTDRA-LRKLEAML-IVADE-KESLIITGIGDVVQPE-EDQILAIGSGGNYALSAARALVE--NTELSAHEI  148 (173)
T ss_dssp             HHHHHHHHHHSTT-GGGCCCEE-EEECS-SCEEEEETTTEEECCC-TTCEEEESTTHHHHHHHHHHHHH--HCCCCHHHH
T ss_pred             HHHHHHHHHHhhh-hccccccc-ccccC-CCcceecccCceEEec-CCCEEEecchHHHHHHHHHHhhh--cCCCCHHHH
Confidence            4444444444332 22333333 44554 6899999999999998 69999999999999999998774  444578899


Q ss_pred             HHHHHHHHHhhccccCCCEEEEEE
Q psy1779         166 CSQVVIQACERDTKSGWGATVYVV  189 (204)
Q Consensus       166 ~~~~l~~~~~~d~~~~~~~~v~~i  189 (204)
                      +++||+.|.++|+.++++++|..|
T Consensus       149 a~~Ai~~Aae~dvyTgd~~~i~~~  172 (173)
T d1g3ka_         149 VEKSLRIAGDICVFTNTNFTIEEL  172 (173)
T ss_dssp             HHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred             HHHHHHHHHhhcEEcCCcEEEEEC
Confidence            999999999999999988887665