Psyllid ID: psy17852

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
MLFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQKNTCL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MLFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQKNTCL
Flexible Loop (DISEMBL)
mlfkqkkenevlereKEELQALNDKLEKSKKklqseldditidletqrakvvdlekkqrnfdkvlaeeklreveaeldderKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLlesqlaeqkntcl
Low Complexity Region (SEG)
MLFKQkkenevlerekeeLQALNdklekskkklqselddITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQKNTCL
Disordered region (IsUnstruct)
********************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
**F***************************************************************************************************************************************************************************************************C*
Disordered Region (DISEMBL)
MLFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQ*********
Disordered Region (DISPRO)
MLFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQ***C*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQRNFDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q99323	2057	Myosin heavy chain, non-m	yes	N/A	0.165	0.016	0.682	1e-14
Q62812	1961	Myosin-9 OS=Rattus norveg	yes	N/A	0.67	0.068	0.362	3e-11
Q8VDD5	1960	Myosin-9 OS=Mus musculus	yes	N/A	0.725	0.073	0.364	4e-10
Q27991	1976	Myosin-10 OS=Bos taurus G	yes	N/A	0.715	0.072	0.357	5e-10
Q9JLT0	1976	Myosin-10 OS=Rattus norve	no	N/A	0.715	0.072	0.357	5e-10
P35580	1976	Myosin-10 OS=Homo sapiens	yes	N/A	0.715	0.072	0.357	6e-10
Q61879	1976	Myosin-10 OS=Mus musculus	no	N/A	0.715	0.072	0.357	6e-10
P35749	1972	Myosin-11 OS=Homo sapiens	no	N/A	0.37	0.037	0.526	7e-10
Q63862	1327	Myosin-11 (Fragments) OS=	no	N/A	0.37	0.055	0.513	1e-09
O08638	1972	Myosin-11 OS=Mus musculus	no	N/A	0.37	0.037	0.513	1e-09

>sp|Q99323|MYSN_DROME Myosin heavy chain, non-muscle OS=Drosophila melanogaster GN=zip PE=1 SV=2

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 55/63 (87%)

Query: 7    KENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLA 66
            K+ E LER+ +EL A ND+L+KSKKK+QSEL+D TI+LE QR KV++LEKKQ+NFDK+LA
Sbjct: 1483 KDIEALERQVKELIAQNDRLDKSKKKIQSELEDATIELEAQRTKVLELEKKQKNFDKILA 1542

Query: 67   EEK 69
            EEK
Sbjct: 1543 EEK 1545

Nonmuscle myosin appears to be responsible for cellularization. Required for morphogenesis and cytokinesis.
Drosophila melanogaster (taxid: 7227)

>sp|Q62812|MYH9_RAT Myosin-9 OS=Rattus norvegicus GN=Myh9 PE=1 SV=3

 Score = 68.2 bits (165), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 96/160 (60%), Gaps = 26/160 (16%)

Query: 26   LEKSKKKLQSELDDITIDLE--------TQRAKV---VDLEKKQRNFDKVL------AEE 68
            LEKS + L+ +++++   LE        T+ AK+   V+L+  +  F++ L      +EE
Sbjct: 1524 LEKSNRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNLQAMKAQFERDLQGRDEQSEE 1583

Query: 69   K-------LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKK 121
            K       +RE+EAEL+DERKQ++ A+A+RKK E D KD+E  ++  NK +E+A+KQL+K
Sbjct: 1584 KKKQLVRQVREMEAELEDERKQRSIAMAARKKLEMDLKDLEAHIDTANKNREEAIKQLRK 1643

Query: 122  L--QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQL 159
            L  Q+++   ++DD R  +   LA  K+ E   K ME ++
Sbjct: 1644 LQAQMKDCMRDVDDTRASREEILAQAKENEKKLKSMEAEM 1683

Cellular myosin that appears to play a role in cytokinesis, cell shape, and specialized functions such as secretion and capping.

Rattus norvegicus (taxid: 10116)

>sp|Q8VDD5|MYH9_MOUSE Myosin-9 OS=Mus musculus GN=Myh9 PE=1 SV=4

 Score = 64.7 bits (156), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 97/159 (61%), Gaps = 14/159 (8%)

Query: 26   LEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEK--LREVEAEL----DD 79
            LE+  K+ ++E++D+    +     V +LEK +R  ++ + E K  L E+E EL    D 
Sbjct: 1495 LERLNKQFRTEMEDLMSSKDDVGKSVHELEKSKRALEQQVEEMKTQLEELEDELQATEDA 1554

Query: 80   ERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKA 139
            + + +    A + ++E D +  ++Q        E+  KQL + Q+RE+EAEL+DERKQ++
Sbjct: 1555 KLRLEVNLQAMKAQFERDLQGRDEQ-------SEEKKKQLVR-QVREMEAELEDERKQRS 1606

Query: 140  AALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQV 178
             A+A+RKK E D KD+E  ++  NK +E+A+KQL+KLQ 
Sbjct: 1607 MAMAARKKLEMDLKDLEAHIDTANKNREEAIKQLRKLQA 1645

Cellular myosin that appears to play a role in cytokinesis, cell shape, and specialized functions such as secretion and capping. Plays a role in cell spreading and cell migration.

Mus musculus (taxid: 10090)

>sp|Q27991|MYH10_BOVIN Myosin-10 OS=Bos taurus GN=MYH10 PE=2 SV=2

 Score = 64.3 bits (155), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 98/151 (64%), Gaps = 8/151 (5%)

Query: 31   KKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALAS 90
            K+L+++++D+    +     V +LEK +R  ++ +  E++R    EL+DE +   A   +
Sbjct: 1507 KQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQV--EEMRTQLEELEDELQ---ATEDA 1561

Query: 91   RKKYEADYKDMEQQLEMNNKLKEDALKQLKKL---QLREVEAELDDERKQKAAALASRKK 147
            + + E + + M+ Q E + + +++  ++ K+L   Q+RE+EAEL+DERKQ+A A+AS+KK
Sbjct: 1562 KLRLEVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKK 1621

Query: 148  YEADYKDMEQQLEMNNKLKEDALKQLKKLQV 178
             E D KD+E Q+E  NK +++ +KQL+KLQ 
Sbjct: 1622 MEIDLKDLEAQIEAANKARDEVIKQLRKLQA 1652

Cellular myosin that appears to play a role in cytokinesis, cell shape, and specialized functions such as secretion and capping. Involved with LARP6 in the stabilization of type I collagen mRNAs for CO1A1 and CO1A2.

Bos taurus (taxid: 9913)

>sp|Q9JLT0|MYH10_RAT Myosin-10 OS=Rattus norvegicus GN=Myh10 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 98/151 (64%), Gaps = 8/151 (5%)

Query: 31   KKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALAS 90
            K+L+++++D+    +     V +LEK +R  ++ +  E++R    EL+DE +   A   +
Sbjct: 1507 KQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQV--EEMRTQLEELEDELQ---ATEDA 1561

Query: 91   RKKYEADYKDMEQQLEMNNKLKEDALKQLKKL---QLREVEAELDDERKQKAAALASRKK 147
            + + E + + M+ Q E + + +++  ++ K+L   Q+RE+EAEL+DERKQ+A A+AS+KK
Sbjct: 1562 KLRLEVNMQAMKAQFERDLQTRDEQNEEKKRLLLKQVRELEAELEDERKQRALAVASKKK 1621

Query: 148  YEADYKDMEQQLEMNNKLKEDALKQLKKLQV 178
             E D KD+E Q+E  NK +++ +KQL+KLQ 
Sbjct: 1622 MEIDLKDLEAQIEAANKARDEVIKQLRKLQA 1652

Involved with LARP6 in the stabilization of type I collagen mRNAs for CO1A1 and CO1A2 (By similarity). Cellular myosin that appears to play a role in cytokinesis, cell shape, and specialized functions such as secretion and capping.

Rattus norvegicus (taxid: 10116)

>sp|P35580|MYH10_HUMAN Myosin-10 OS=Homo sapiens GN=MYH10 PE=1 SV=3

 Score = 64.3 bits (155), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 98/151 (64%), Gaps = 8/151 (5%)

Query: 31   KKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALAS 90
            K+L+++++D+    +     V +LEK +R  ++ +  E++R    EL+DE +   A   +
Sbjct: 1507 KQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQV--EEMRTQLEELEDELQ---ATEDA 1561

Query: 91   RKKYEADYKDMEQQLEMNNKLKEDALKQLKKL---QLREVEAELDDERKQKAAALASRKK 147
            + + E + + M+ Q E + + +++  ++ K+L   Q+RE+EAEL+DERKQ+A A+AS+KK
Sbjct: 1562 KLRLEVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKK 1621

Query: 148  YEADYKDMEQQLEMNNKLKEDALKQLKKLQV 178
             E D KD+E Q+E  NK +++ +KQL+KLQ 
Sbjct: 1622 MEIDLKDLEAQIEAANKARDEVIKQLRKLQA 1652

Cellular myosin that appears to play a role in cytokinesis, cell shape, and specialized functions such as secretion and capping. Involved with LARP6 in the stabilization of type I collagen mRNAs for CO1A1 and CO1A2.

Homo sapiens (taxid: 9606)

>sp|Q61879|MYH10_MOUSE Myosin-10 OS=Mus musculus GN=Myh10 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 98/151 (64%), Gaps = 8/151 (5%)

Query: 31   KKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALAS 90
            K+L+++++D+    +     V +LEK +R  ++ +  E++R    EL+DE +   A   +
Sbjct: 1507 KQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQV--EEMRTQLEELEDELQ---ATEDA 1561

Query: 91   RKKYEADYKDMEQQLEMNNKLKEDALKQLKKL---QLREVEAELDDERKQKAAALASRKK 147
            + + E + + M+ Q E + + +++  ++ K+L   Q+RE+EAEL+DERKQ+A A+AS+KK
Sbjct: 1562 KLRLEVNMQAMKAQFERDLQTRDEQNEEKKRLLLKQVRELEAELEDERKQRALAVASKKK 1621

Query: 148  YEADYKDMEQQLEMNNKLKEDALKQLKKLQV 178
             E D KD+E Q+E  NK +++ +KQL+KLQ 
Sbjct: 1622 MEIDLKDLEAQIEAANKARDEVIKQLRKLQA 1652

Involved with LARP6 in the stabilization of type I collagen mRNAs for CO1A1 and CO1A2 (By similarity). Cellular myosin that appears to play a role in cytokinesis, cell shape, and specialized functions such as secretion and capping.

Mus musculus (taxid: 10090)

>sp|P35749|MYH11_HUMAN Myosin-11 OS=Homo sapiens GN=MYH11 PE=1 SV=3

 Score = 63.9 bits (154), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/76 (52%), Positives = 54/76 (71%), Gaps = 2/76 (2%)

Query: 6    KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVL 65
            +KE E L ++ EE  A  DKLEK+K +LQ ELDD+ +DL+ QR  V +LEKKQR FD++L
Sbjct: 1398 QKEIENLTQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQRKFDQLL 1457

Query: 66   AEEKLREVEAELDDER 81
            AEEK   + ++  DER
Sbjct: 1458 AEEK--NISSKYADER 1471

Muscle contraction.

Homo sapiens (taxid: 9606)

>sp|Q63862|MYH11_RAT Myosin-11 (Fragments) OS=Rattus norvegicus GN=Myh11 PE=2 SV=3

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 2/76 (2%)

Query: 6   KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVL 65
           +KE E L ++ EE  A  DKLEK+K +LQ ELDD+ +DL+ QR  V +LEKKQ+ FD++L
Sbjct: 753 QKEMEGLGQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLL 812

Query: 66  AEEKLREVEAELDDER 81
           AEEK   + ++  DER
Sbjct: 813 AEEK--NISSKYADER 826

Muscle contraction.

Rattus norvegicus (taxid: 10116)

>sp|O08638|MYH11_MOUSE Myosin-11 OS=Mus musculus GN=Myh11 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 2/76 (2%)

Query: 6    KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVL 65
            +KE E L ++ EE  A  DKLEK+K +LQ ELDD+ +DL+ QR  V +LEKKQ+ FD++L
Sbjct: 1398 QKEMEGLSQQYEEKAAAYDKLEKTKNRLQQELDDLVVDLDNQRQLVSNLEKKQKKFDQLL 1457

Query: 66   AEEKLREVEAELDDER 81
            AEEK   + ++  DER
Sbjct: 1458 AEEK--NISSKYADER 1471

Muscle contraction.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
444712126	1701	Myosin-10 [Tupaia chinensis]	0.54	0.063	0.581	6e-25
307214547	1830	Myosin heavy chain, non-muscle [Harpegna	0.795	0.086	0.473	2e-20
242014184	1968	myosin-9, putative [Pediculus humanus co	0.81	0.082	0.458	5e-20
380023226	1967	PREDICTED: LOW QUALITY PROTEIN: myosin h	0.79	0.080	0.470	8e-20
328790487	1967	PREDICTED: myosin heavy chain, non-muscl	0.79	0.080	0.470	8e-20
345486457	1882	PREDICTED: LOW QUALITY PROTEIN: myosin h	0.83	0.088	0.443	8e-20
350412852	1967	PREDICTED: myosin heavy chain, non-muscl	0.795	0.080	0.462	1e-19
340711721	1969	PREDICTED: myosin heavy chain, non-muscl	0.79	0.080	0.465	1e-19
340711723	1979	PREDICTED: myosin heavy chain, non-muscl	0.79	0.079	0.465	1e-19
157118641	1888	myosin heavy chain, nonmuscle or smooth	0.87	0.092	0.398	2e-19

>gi|444712126|gb|ELW53057.1| Myosin-10 [Tupaia chinensis]

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 91/110 (82%)

Query: 69   KLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVE 128
            ++RE+EAEL+DERKQ+A A+AS+KK E D KD+E Q+E  NK +++ +KQL+KLQ+RE+E
Sbjct: 1225 QVRELEAELEDERKQRALAVASKKKMEIDLKDLEAQIEAANKARDEVIKQLRKLQVRELE 1284

Query: 129  AELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQV 178
            AEL+DERKQ+A A+AS+KK E D KD+E Q+E  NK +++ +KQL+KLQ 
Sbjct: 1285 AELEDERKQRALAVASKKKMEIDLKDLEAQIEAANKARDEVIKQLRKLQA 1334

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307214547|gb|EFN89532.1| Myosin heavy chain, non-muscle [Harpegnathos saltator]

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/173 (47%), Positives = 113/173 (65%), Gaps = 14/173 (8%)

Query: 12   LEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEK-- 69
            L RE +EL    ++LE+ ++ LQSELD++  +  T    V +LEK +R  +  LAE+K  
Sbjct: 1346 LTRELDELSEKVEELERGRRGLQSELDELVNNQGTADKNVHELEKAKRALESQLAEQKSQ 1405

Query: 70   LREVEAEL----DDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLR 125
            + E+E EL    D + + +    A R ++E D +  E+Q        E+  + L K QLR
Sbjct: 1406 VEELEDELQFTEDAKLRLEVNMQALRAQFERDLQTKEEQ-------AEEKRRGLVK-QLR 1457

Query: 126  EVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQV 178
            + EAEL+DERKQ+AAA+A RKK EADYKD+EQQLEM+NK+KEDALKQLKKLQ 
Sbjct: 1458 DFEAELEDERKQRAAAVAQRKKMEADYKDIEQQLEMHNKVKEDALKQLKKLQA 1510

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014184|ref|XP_002427775.1| myosin-9, putative [Pediculus humanus corporis] gi|212512229|gb|EEB15037.1| myosin-9, putative [Pediculus humanus corporis]

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/170 (45%), Positives = 114/170 (67%), Gaps = 8/170 (4%)

Query: 12   LEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLR 71
            L RE +EL    ++LE+ ++ LQ+ELD++  +  T    V +LEK +R  +  LAE K +
Sbjct: 1484 LTRELDELSQKVEELERGRRALQAELDELVNNQGTADKNVHELEKAKRALETQLAEAKTQ 1543

Query: 72   EVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL---QLREVE 128
                EL+DE +    A   + + E + + +  Q E + + KE+  ++ ++    QLR++E
Sbjct: 1544 N--EELEDELQLSEDA---KLRLEVNMQALRAQCERDLQAKEEQAEEKRRGLIKQLRDIE 1598

Query: 129  AELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQV 178
            AEL+DERKQ+ AALAS+KK EADYKD+EQQLEM+NK+KEDALKQLKKLQV
Sbjct: 1599 AELEDERKQRTAALASKKKLEADYKDLEQQLEMHNKIKEDALKQLKKLQV 1648

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023226|ref|XP_003695426.1| PREDICTED: LOW QUALITY PROTEIN: myosin heavy chain, non-muscle-like [Apis florea]

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 81/172 (47%), Positives = 114/172 (66%), Gaps = 14/172 (8%)

Query: 12   LEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEK-- 69
            L RE +E+    ++LE+ ++ LQSELD++  +  T    V +LEK +R  +  LAE++  
Sbjct: 1488 LTRELDEMNEKVEELERIRRGLQSELDELVNNQGTADKNVHELEKAKRALESQLAEQRSQ 1547

Query: 70   LREVEAEL----DDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLR 125
            + E+E EL    D + + +    A R ++E D +  E+Q        E+  + L K QLR
Sbjct: 1548 VEELEDELQFTEDAKLRLEVNMQALRAQFERDLQAKEEQ-------AEEKRRGLVK-QLR 1599

Query: 126  EVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ 177
            ++EAEL+DERKQKAAA+A RKK EADYKD+EQQLEM+NK+KEDALKQLKKLQ
Sbjct: 1600 DLEAELEDERKQKAAAIAQRKKMEADYKDIEQQLEMHNKVKEDALKQLKKLQ 1651

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790487|ref|XP_623323.3| PREDICTED: myosin heavy chain, non-muscle [Apis mellifera]

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 81/172 (47%), Positives = 114/172 (66%), Gaps = 14/172 (8%)

Query: 12   LEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEK-- 69
            L RE +E+    ++LE+ ++ LQSELD++  +  T    V +LEK +R  +  LAE++  
Sbjct: 1488 LTRELDEMNEKVEELERIRRGLQSELDELVNNQGTADKNVHELEKAKRALESQLAEQRSQ 1547

Query: 70   LREVEAEL----DDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLR 125
            + E+E EL    D + + +    A R ++E D +  E+Q        E+  + L K QLR
Sbjct: 1548 VEELEDELQFTEDAKLRLEVNMQALRAQFERDLQAKEEQ-------AEEKRRGLVK-QLR 1599

Query: 126  EVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ 177
            ++EAEL+DERKQKAAA+A RKK EADYKD+EQQLEM+NK+KEDALKQLKKLQ
Sbjct: 1600 DLEAELEDERKQKAAAIAQRKKMEADYKDIEQQLEMHNKVKEDALKQLKKLQ 1651

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486457|ref|XP_003425478.1| PREDICTED: LOW QUALITY PROTEIN: myosin heavy chain, non-muscle [Nasonia vitripennis]

 Score =  102 bits (254), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/178 (44%), Positives = 116/178 (65%), Gaps = 12/178 (6%)

Query: 7    KENEVLEREKEELQALNDK---LEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
            KE +VL   +E L  +NDK   LE+ +K LQ+ELD++  +  T    V +LEK +R    
Sbjct: 1365 KETKVLSLTRE-LDEMNDKVEELERGRKSLQAELDELVNNQGTADKNVHELEKAKR---- 1419

Query: 64   VLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL- 122
             L E K+ E +A++++   +      ++ + E + + M  Q E   + KE+  ++ ++  
Sbjct: 1420 -LLESKISEQQAQVEELEDELQCTEDAKLRLEVNMQAMRAQFERELQAKEEQAEEKRRGL 1478

Query: 123  --QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQV 178
              QLR++EAEL+DERKQ++AA+A RKK EADYKDMEQQLEM+NK+KEDALKQLKKLQ 
Sbjct: 1479 VKQLRDLEAELEDERKQRSAAIAQRKKIEADYKDMEQQLEMHNKVKEDALKQLKKLQT 1536

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412852|ref|XP_003489788.1| PREDICTED: myosin heavy chain, non-muscle-like [Bombus impatiens]

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/173 (46%), Positives = 114/173 (65%), Gaps = 14/173 (8%)

Query: 12   LEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEK-- 69
            L RE +E+    ++LE+ ++ LQSELD++  +  T    V +LEK +R  +  LAE++  
Sbjct: 1488 LTRELDEMNEKVEELERIRRGLQSELDELVNNQGTADKNVHELEKAKRALESQLAEQRSQ 1547

Query: 70   LREVEAEL----DDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLR 125
            + E+E EL    D + + +    A R ++E D +  E+Q        E+  + L K QLR
Sbjct: 1548 VEELEDELQFTEDAKLRLEVNMQALRAQFERDLQAKEEQ-------AEEKRRGLVK-QLR 1599

Query: 126  EVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQV 178
            ++EAEL+DERKQ+AAA+A RKK EADYKD+EQQLEM+NK+KEDALKQLKKLQ 
Sbjct: 1600 DLEAELEDERKQRAAAIAQRKKMEADYKDIEQQLEMHNKVKEDALKQLKKLQT 1652

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711721|ref|XP_003394419.1| PREDICTED: myosin heavy chain, non-muscle-like isoform 1 [Bombus terrestris]

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/172 (46%), Positives = 114/172 (66%), Gaps = 14/172 (8%)

Query: 12   LEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEK-- 69
            L RE +E+    ++LE+ ++ LQSELD++  +  T    V +LEK +R  +  LAE++  
Sbjct: 1488 LTRELDEMNEKVEELERIRRGLQSELDELVNNQGTADKNVHELEKAKRALESQLAEQRSQ 1547

Query: 70   LREVEAEL----DDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLR 125
            + E+E EL    D + + +    A R ++E D +  E+Q        E+  + L K QLR
Sbjct: 1548 VEELEDELQFTEDAKLRLEVNMQALRAQFERDLQAKEEQ-------AEEKRRGLVK-QLR 1599

Query: 126  EVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ 177
            ++EAEL+DERKQ+AAA+A RKK EADYKD+EQQLEM+NK+KEDALKQLKKLQ
Sbjct: 1600 DLEAELEDERKQRAAAIAQRKKMEADYKDIEQQLEMHNKVKEDALKQLKKLQ 1651

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711723|ref|XP_003394420.1| PREDICTED: myosin heavy chain, non-muscle-like isoform 2 [Bombus terrestris]

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/172 (46%), Positives = 114/172 (66%), Gaps = 14/172 (8%)

Query: 12   LEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEK-- 69
            L RE +E+    ++LE+ ++ LQSELD++  +  T    V +LEK +R  +  LAE++  
Sbjct: 1498 LTRELDEMNEKVEELERIRRGLQSELDELVNNQGTADKNVHELEKAKRALESQLAEQRSQ 1557

Query: 70   LREVEAEL----DDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLR 125
            + E+E EL    D + + +    A R ++E D +  E+Q        E+  + L K QLR
Sbjct: 1558 VEELEDELQFTEDAKLRLEVNMQALRAQFERDLQAKEEQ-------AEEKRRGLVK-QLR 1609

Query: 126  EVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ 177
            ++EAEL+DERKQ+AAA+A RKK EADYKD+EQQLEM+NK+KEDALKQLKKLQ
Sbjct: 1610 DLEAELEDERKQRAAAIAQRKKMEADYKDIEQQLEMHNKVKEDALKQLKKLQ 1661

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157118641|ref|XP_001659192.1| myosin heavy chain, nonmuscle or smooth muscle [Aedes aegypti] gi|108883254|gb|EAT47479.1| AAEL001411-PA [Aedes aegypti]

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 102/256 (39%), Positives = 136/256 (53%), Gaps = 82/256 (32%)

Query: 4    KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
            K  K+ EVL+R+  ELQA ND+L+KSKKK+QSEL+D TI+LETQR KV+DLEKKQ+NFDK
Sbjct: 1321 KMNKDIEVLQRQILELQATNDRLDKSKKKIQSELEDATIELETQRTKVLDLEKKQKNFDK 1380

Query: 64   VLA-----------------------EEKLREVEAELDD--------ERKQKAA------ 86
            VLA                       E K+  +  ELD+        E K+KA       
Sbjct: 1381 VLAEEKAVSEQHAQERDAAEREAREKETKVLSLTRELDEAYEKIDDLETKRKALQNELDE 1440

Query: 87   -----ALASRKKYE------------ADYKDMEQQLEMNNKLKEDA-------LKQLKKL 122
                   A +  +E            A+ K   ++LE + +L EDA       ++ L+  
Sbjct: 1441 LANTQGTADKNVHELEKAKRALESQLAELKAQNEELEDDLQLTEDAKLRLEVNMQALRAQ 1500

Query: 123  QLREVEAE---------------------LDDERKQKAAALASRKKYEADYKDMEQQLEM 161
              R+V+A+                     LD+ERKQ+AAA+A++KK E D KD+E  LEM
Sbjct: 1501 FERDVQAKEEQSEEKRRGLVKALRDMEAELDEERKQRAAAVAAKKKLEGDLKDIEATLEM 1560

Query: 162  NNKLKEDALKQLKKLQ 177
            NNK+KEDALKQ KKLQ
Sbjct: 1561 NNKVKEDALKQAKKLQ 1576

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
ZFIN|ZDB-GENE-091112-18	1686	si:ch211-150d5.2 "si:ch211-150	0.71	0.084	0.378	1e-17
UNIPROTKB|F1P312	1861	MYH10 "Uncharacterized protein	0.725	0.077	0.380	1.1e-17
UNIPROTKB|F1P313	1871	MYH10 "Uncharacterized protein	0.725	0.077	0.380	1.1e-17
UNIPROTKB|F1P314	1882	MYH10 "Uncharacterized protein	0.725	0.077	0.380	1.2e-17
UNIPROTKB|F1NGG0	1892	MYH10 "Uncharacterized protein	0.725	0.076	0.380	1.2e-17
UNIPROTKB|I3L5B3	1358	LOC100621981 "Uncharacterized	0.715	0.105	0.369	1.6e-17
UNIPROTKB|F1SSA6	1864	LOC396903 "Uncharacterized pro	0.715	0.076	0.369	2.4e-17
UNIPROTKB|Q27991	1976	MYH10 "Myosin-10" [Bos taurus	0.715	0.072	0.369	2.5e-17
UNIPROTKB|P35580	1976	MYH10 "Myosin-10" [Homo sapien	0.715	0.072	0.369	2.5e-17
MGI|MGI:1930780	1976	Myh10 "myosin, heavy polypepti	0.715	0.072	0.369	2.5e-17

ZFIN|ZDB-GENE-091112-18 si:ch211-150d5.2 "si:ch211-150d5.2" [Danio rerio (taxid:7955)]

 Score = 231 (86.4 bits), Expect = 1.0e-17, P = 1.0e-17
 Identities = 56/148 (37%), Positives = 91/148 (61%)

Query:    51 VVDLEKKQRNFDKVLAEEK--LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMN 108
             V DLEK +R  ++ L E K  L E+E EL      K     + +  +A Y   E+ L+  
Sbjct:  1519 VHDLEKSKRAMEQQLEEMKTQLEELEDELQATEDAKLRLEVNMQAMKAQY---ERDLQGR 1575

Query:   109 NKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKED 168
             ++L E+  +QL K Q+RE+E EL+DERKQ+  A+A+RKK E D K++E  ++  NK +++
Sbjct:  1576 DELGEEKKRQLLK-QVREMEMELEDERKQRTLAMAARKKMELDLKELEAAIDQANKNRDE 1634

Query:   169 ALKQLKKLQVHELEKAKRLLESQLAEQK 196
             ALKQLKK+Q    +  + L +++L+ ++
Sbjct:  1635 ALKQLKKVQAQMKDLLRELEDTRLSREE 1662

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1P312 MYH10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 231 (86.4 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 59/155 (38%), Positives = 95/155 (61%)

Query:    51 VVDLEKKQRNFDKVLAEEKLREVEAELDDE-RKQKAAALASRKKYEADYKDMEQQLEMNN 109
             V +LEK +R  ++ + EE   ++E EL+DE +  + A L      +A     E+ L+  +
Sbjct:  1412 VHELEKSKRTLEQQV-EEMRTQLE-ELEDELQATEDAKLRLEVNMQAMKAQFERDLQARD 1469

Query:   110 KLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDA 169
             +  E+  + L K Q+RE+EAEL+DERKQ+A A+A++KK E D KD+E Q+E  NK +++A
Sbjct:  1470 EQNEEKKRMLVK-QVRELEAELEDERKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEA 1528

Query:   170 LKQLKKLQVH------ELEKAKRLLESQLAEQKNT 198
             +KQL+KLQ        ELE+A+   +   A+ K +
Sbjct:  1529 IKQLRKLQAQMKDYQRELEEARASRDEIFAQSKES 1563

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|F1P313 MYH10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 231 (86.4 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 59/155 (38%), Positives = 95/155 (61%)

Query:    51 VVDLEKKQRNFDKVLAEEKLREVEAELDDE-RKQKAAALASRKKYEADYKDMEQQLEMNN 109
             V +LEK +R  ++ + EE   ++E EL+DE +  + A L      +A     E+ L+  +
Sbjct:  1422 VHELEKSKRTLEQQV-EEMRTQLE-ELEDELQATEDAKLRLEVNMQAMKAQFERDLQARD 1479

Query:   110 KLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDA 169
             +  E+  + L K Q+RE+EAEL+DERKQ+A A+A++KK E D KD+E Q+E  NK +++A
Sbjct:  1480 EQNEEKKRMLVK-QVRELEAELEDERKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEA 1538

Query:   170 LKQLKKLQVH------ELEKAKRLLESQLAEQKNT 198
             +KQL+KLQ        ELE+A+   +   A+ K +
Sbjct:  1539 IKQLRKLQAQMKDYQRELEEARASRDEIFAQSKES 1573

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|F1P314 MYH10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 231 (86.4 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 59/155 (38%), Positives = 95/155 (61%)

Query:    51 VVDLEKKQRNFDKVLAEEKLREVEAELDDE-RKQKAAALASRKKYEADYKDMEQQLEMNN 109
             V +LEK +R  ++ + EE   ++E EL+DE +  + A L      +A     E+ L+  +
Sbjct:  1433 VHELEKSKRTLEQQV-EEMRTQLE-ELEDELQATEDAKLRLEVNMQAMKAQFERDLQARD 1490

Query:   110 KLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDA 169
             +  E+  + L K Q+RE+EAEL+DERKQ+A A+A++KK E D KD+E Q+E  NK +++A
Sbjct:  1491 EQNEEKKRMLVK-QVRELEAELEDERKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEA 1549

Query:   170 LKQLKKLQVH------ELEKAKRLLESQLAEQKNT 198
             +KQL+KLQ        ELE+A+   +   A+ K +
Sbjct:  1550 IKQLRKLQAQMKDYQRELEEARASRDEIFAQSKES 1584

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|F1NGG0 MYH10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 231 (86.4 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 59/155 (38%), Positives = 95/155 (61%)

Query:    51 VVDLEKKQRNFDKVLAEEKLREVEAELDDE-RKQKAAALASRKKYEADYKDMEQQLEMNN 109
             V +LEK +R  ++ + EE   ++E EL+DE +  + A L      +A     E+ L+  +
Sbjct:  1443 VHELEKSKRTLEQQV-EEMRTQLE-ELEDELQATEDAKLRLEVNMQAMKAQFERDLQARD 1500

Query:   110 KLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDA 169
             +  E+  + L K Q+RE+EAEL+DERKQ+A A+A++KK E D KD+E Q+E  NK +++A
Sbjct:  1501 EQNEEKKRMLVK-QVRELEAELEDERKQRALAVAAKKKMEMDLKDLEGQIEAANKARDEA 1559

Query:   170 LKQLKKLQVH------ELEKAKRLLESQLAEQKNT 198
             +KQL+KLQ        ELE+A+   +   A+ K +
Sbjct:  1560 IKQLRKLQAQMKDYQRELEEARASRDEIFAQSKES 1594

GO:0005524 "ATP binding" evidence=IEA

GO:0000146 "microfilament motor activity" evidence=IEA

GO:0000281 "cytokinesis after mitosis" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001725 "stress fiber" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001778 "plasma membrane repair" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0006930 "substrate-dependent cell migration, cell extension" evidence=IEA

GO:0007097 "nuclear migration" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0016460 "myosin II complex" evidence=IEA

GO:0021592 "fourth ventricle development" evidence=IEA

GO:0021670 "lateral ventricle development" evidence=IEA

GO:0021678 "third ventricle development" evidence=IEA

GO:0021680 "cerebellar Purkinje cell layer development" evidence=IEA

GO:0030048 "actin filament-based movement" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0030898 "actin-dependent ATPase activity" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043197 "dendritic spine" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0050885 "neuromuscular process controlling balance" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0055003 "cardiac myofibril assembly" evidence=IEA

GO:0055015 "ventricular cardiac muscle cell development" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

UNIPROTKB|I3L5B3 LOC100621981 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 228 (85.3 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 58/157 (36%), Positives = 99/157 (63%)

Query:    51 VVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNK 110
             V +LEK +R  ++ + EE   ++E EL+DE +   A   ++ + E + + M+ Q E + +
Sbjct:   909 VHELEKSKRALEQQV-EEMRTQLE-ELEDELQ---ATEDAKLRLEVNMQAMKAQFERDLQ 963

Query:   111 LKEDALKQLKKL---QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKE 167
              +++  ++ K+L   Q+RE+EAEL+DERKQ+A A+AS+KK E D KD+E Q+E  NK ++
Sbjct:   964 TRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEIDLKDLEAQIEAANKARD 1023

Query:   168 DALKQLKKLQVH------ELEKAKRLLESQLAEQKNT 198
             + +KQL+KLQ        ELE+A+   +   A+ K +
Sbjct:  1024 EVIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKES 1060

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|F1SSA6 LOC396903 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 228 (85.3 bits), Expect = 2.4e-17, P = 2.4e-17
 Identities = 58/157 (36%), Positives = 99/157 (63%)

Query:    51 VVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNK 110
             V +LEK +R  ++ + EE   ++E EL+DE +   A   ++ + E + + M+ Q E + +
Sbjct:  1415 VHELEKSKRALEQQV-EEMRTQLE-ELEDELQ---ATEDAKLRLEVNMQAMKAQFERDLQ 1469

Query:   111 LKEDALKQLKKL---QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKE 167
              +++  ++ K+L   Q+RE+EAEL+DERKQ+A A+AS+KK E D KD+E Q+E  NK ++
Sbjct:  1470 TRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEIDLKDLEAQIEAANKARD 1529

Query:   168 DALKQLKKLQVH------ELEKAKRLLESQLAEQKNT 198
             + +KQL+KLQ        ELE+A+   +   A+ K +
Sbjct:  1530 EVIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKES 1566

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|Q27991 MYH10 "Myosin-10" [Bos taurus (taxid:9913)]

 Score = 228 (85.3 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 58/157 (36%), Positives = 99/157 (63%)

Query:    51 VVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNK 110
             V +LEK +R  ++ + EE   ++E EL+DE +   A   ++ + E + + M+ Q E + +
Sbjct:  1527 VHELEKSKRALEQQV-EEMRTQLE-ELEDELQ---ATEDAKLRLEVNMQAMKAQFERDLQ 1581

Query:   111 LKEDALKQLKKL---QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKE 167
              +++  ++ K+L   Q+RE+EAEL+DERKQ+A A+AS+KK E D KD+E Q+E  NK ++
Sbjct:  1582 TRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEIDLKDLEAQIEAANKARD 1641

Query:   168 DALKQLKKLQVH------ELEKAKRLLESQLAEQKNT 198
             + +KQL+KLQ        ELE+A+   +   A+ K +
Sbjct:  1642 EVIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKES 1678

GO:0006930 "substrate-dependent cell migration, cell extension" evidence=ISS

GO:0006887 "exocytosis" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0001778 "plasma membrane repair" evidence=ISS

GO:0001764 "neuron migration" evidence=ISS

GO:0001725 "stress fiber" evidence=ISS

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0055015 "ventricular cardiac muscle cell development" evidence=IEA

GO:0055003 "cardiac myofibril assembly" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0050885 "neuromuscular process controlling balance" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043197 "dendritic spine" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0030898 "actin-dependent ATPase activity" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030048 "actin filament-based movement" evidence=IEA

GO:0021680 "cerebellar Purkinje cell layer development" evidence=IEA

GO:0021678 "third ventricle development" evidence=IEA

GO:0021670 "lateral ventricle development" evidence=IEA

GO:0021592 "fourth ventricle development" evidence=IEA

GO:0016460 "myosin II complex" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007097 "nuclear migration" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000281 "cytokinesis after mitosis" evidence=IEA

GO:0000146 "microfilament motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

UNIPROTKB|P35580 MYH10 "Myosin-10" [Homo sapiens (taxid:9606)]

 Score = 228 (85.3 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 58/157 (36%), Positives = 99/157 (63%)

Query:    51 VVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNK 110
             V +LEK +R  ++ + EE   ++E EL+DE +   A   ++ + E + + M+ Q E + +
Sbjct:  1527 VHELEKSKRALEQQV-EEMRTQLE-ELEDELQ---ATEDAKLRLEVNMQAMKAQFERDLQ 1581

Query:   111 LKEDALKQLKKL---QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKE 167
              +++  ++ K+L   Q+RE+EAEL+DERKQ+A A+AS+KK E D KD+E Q+E  NK ++
Sbjct:  1582 TRDEQNEEKKRLLIKQVRELEAELEDERKQRALAVASKKKMEIDLKDLEAQIEAANKARD 1641

Query:   168 DALKQLKKLQVH------ELEKAKRLLESQLAEQKNT 198
             + +KQL+KLQ        ELE+A+   +   A+ K +
Sbjct:  1642 EVIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKES 1678

GO:0005516 "calmodulin binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001778 "plasma membrane repair" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0006930 "substrate-dependent cell migration, cell extension" evidence=IEA

GO:0007097 "nuclear migration" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0016460 "myosin II complex" evidence=IEA

GO:0021592 "fourth ventricle development" evidence=IEA

GO:0021670 "lateral ventricle development" evidence=IEA

GO:0021678 "third ventricle development" evidence=IEA

GO:0021680 "cerebellar Purkinje cell layer development" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043197 "dendritic spine" evidence=IEA

GO:0050885 "neuromuscular process controlling balance" evidence=IEA

GO:0055003 "cardiac myofibril assembly" evidence=IEA

GO:0055015 "ventricular cardiac muscle cell development" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0016459 "myosin complex" evidence=NAS

GO:0003779 "actin binding" evidence=NAS

GO:0005524 "ATP binding" evidence=IDA;NAS

GO:0030496 "midbody" evidence=IDA

GO:0032154 "cleavage furrow" evidence=IDA

GO:0001725 "stress fiber" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000146 "microfilament motor activity" evidence=IDA

GO:0000281 "cytokinesis after mitosis" evidence=IDA

GO:0030048 "actin filament-based movement" evidence=IDA

GO:0030898 "actin-dependent ATPase activity" evidence=IDA

GO:0043531 "ADP binding" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

GO:0007411 "axon guidance" evidence=TAS

MGI|MGI:1930780 Myh10 "myosin, heavy polypeptide 10, non-muscle" [Mus musculus (taxid:10090)]

 Score = 228 (85.3 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 58/157 (36%), Positives = 99/157 (63%)

Query:    51 VVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNK 110
             V +LEK +R  ++ + EE   ++E EL+DE +   A   ++ + E + + M+ Q E + +
Sbjct:  1527 VHELEKSKRALEQQV-EEMRTQLE-ELEDELQ---ATEDAKLRLEVNMQAMKAQFERDLQ 1581

Query:   111 LKEDALKQLKKL---QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKE 167
              +++  ++ K+L   Q+RE+EAEL+DERKQ+A A+AS+KK E D KD+E Q+E  NK ++
Sbjct:  1582 TRDEQNEEKKRLLLKQVRELEAELEDERKQRALAVASKKKMEIDLKDLEAQIEAANKARD 1641

Query:   168 DALKQLKKLQVH------ELEKAKRLLESQLAEQKNT 198
             + +KQL+KLQ        ELE+A+   +   A+ K +
Sbjct:  1642 EVIKQLRKLQAQMKDYQRELEEARASRDEIFAQSKES 1678

GO:0000146 "microfilament motor activity" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000281 "cytokinesis after mitosis" evidence=ISO;IMP

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001725 "stress fiber" evidence=ISO;IDA;IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0001778 "plasma membrane repair" evidence=IMP

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005819 "spindle" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005938 "cell cortex" evidence=ISO;IDA

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006887 "exocytosis" evidence=IMP

GO:0006930 "substrate-dependent cell migration, cell extension" evidence=IMP

GO:0007097 "nuclear migration" evidence=IMP

GO:0007409 "axonogenesis" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0007512 "adult heart development" evidence=IMP

GO:0008152 "metabolic process" evidence=ISO

GO:0008283 "cell proliferation" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0016459 "myosin complex" evidence=IDA

GO:0016460 "myosin II complex" evidence=IDA

GO:0021592 "fourth ventricle development" evidence=IMP

GO:0021670 "lateral ventricle development" evidence=IMP

GO:0021678 "third ventricle development" evidence=IMP

GO:0021680 "cerebellar Purkinje cell layer development" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IGI

GO:0030048 "actin filament-based movement" evidence=ISO

GO:0030239 "myofibril assembly" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0030496 "midbody" evidence=ISO

GO:0030898 "actin-dependent ATPase activity" evidence=ISO

GO:0031175 "neuron projection development" evidence=IMP

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0032154 "cleavage furrow" evidence=ISO

GO:0043005 "neuron projection" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043197 "dendritic spine" evidence=IDA

GO:0043531 "ADP binding" evidence=ISO

GO:0050885 "neuromuscular process controlling balance" evidence=IMP

GO:0051015 "actin filament binding" evidence=ISO

GO:0055003 "cardiac myofibril assembly" evidence=IMP

GO:0055015 "ventricular cardiac muscle cell development" evidence=IMP

GO:0060041 "retina development in camera-type eye" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	200
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	2e-06
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	9e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 36/83 (43%), Positives = 51/83 (61%)

Query: 4   KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
           K  ++   LE   E   A  D LEK+K +LQSEL+D+ I+LE   A   +LEKKQ+NFDK
Sbjct: 325 KLNQKISELEEAAEAANAKCDSLEKTKSRLQSELEDLQIELERANAAASELEKKQKNFDK 384

Query: 64  VLAEEKLREVEAELDDERKQKAA 86
           +LAE K +  E + + +  Q+ A
Sbjct: 385 ILAEWKRKVDELQAELDTAQREA 407

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 43/159 (27%), Positives = 84/159 (52%), Gaps = 5/159 (3%)

Query: 7   KENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKV-VDLEKKQRNFD--K 63
           K    LE EK+ELQA  ++ E + +  +S++    ++L   R+++   L +K+  F+  +
Sbjct: 461 KARRRLEAEKDELQAALEEAEAALELEESKVLRAQVELSQIRSEIERRLAEKEEEFENTR 520

Query: 64  VLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL- 122
              +  +  ++A L+ E K KA A   +KK E D  ++E  L+  NK   +A K +KK  
Sbjct: 521 KNHQRAIESLQATLEAEAKGKAEASRLKKKLEGDINELEIALDHANKANAEAQKNVKKYQ 580

Query: 123 -QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLE 160
            Q++E++ ++++E++ +  A       E     +E +LE
Sbjct: 581 QQVKELQTQVEEEQRAREDAREQLAVAERRATALEAELE 619

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 13/209 (6%)

Query: 2   LFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNF 61
           + ++++E E LE + EEL+    +LEK+  +L+ EL+++  +LE  R ++ +L ++    
Sbjct: 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL 731

Query: 62  DKVLA---------EEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLK 112
            K LA         EE++ ++  EL +   +        ++ E +  + E ++E      
Sbjct: 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791

Query: 113 EDALKQLKKL--QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDAL 170
           E   ++LK L   L E+ AEL    ++ A      +  E      E++LE   +  E+  
Sbjct: 792 EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS 851

Query: 171 KQLKKL--QVHELEKAKRLLESQLAEQKN 197
           + ++ L  ++ ELE+    LES+L    N
Sbjct: 852 EDIESLAAEIEELEELIEELESELEALLN 880

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 43/195 (22%), Positives = 94/195 (48%), Gaps = 4/195 (2%)

Query: 6   KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVL 65
           ++E E L+   EEL+     LE+  + ++SEL ++   +E     +  LE+   + +  L
Sbjct: 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL 788

Query: 66  AEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLR 125
           +  ++ E++AEL    ++ +   A  ++ E     +  + E   K  ++  +Q   L+ +
Sbjct: 789 SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ 848

Query: 126 --EVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ--VHEL 181
              +E E+++   +K       ++ EA  +D+E +L    K +++   QL++L+  + EL
Sbjct: 849 IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908

Query: 182 EKAKRLLESQLAEQK 196
           E        +L+E K
Sbjct: 909 EAQIEKKRKRLSELK 923

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 41/185 (22%), Positives = 86/185 (46%), Gaps = 2/185 (1%)

Query: 5   QKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKV 64
            ++    LER+ EEL+A  ++LE    +L  EL ++   LE  + ++  LE +    +  
Sbjct: 307 LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366

Query: 65  L--AEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL 122
           L   E +L E+E +L+  R + A           + + +E +LE     +E   +++++L
Sbjct: 367 LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL 426

Query: 123 QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELE 182
             +  EAEL + + +        ++ + + + +E+ LE   +  E+A + L   +    +
Sbjct: 427 LKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQ 486

Query: 183 KAKRL 187
              RL
Sbjct: 487 LQARL 491

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
KOG0161|consensus	1930		99.78
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.78
KOG0161|consensus	1930		99.47
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.36
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.54
PRK02224	880	chromosome segregation protein; Provisional	97.53
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.36
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.3
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.29
KOG0977|consensus	546		97.08
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	96.96
PRK11637	428	AmiB activator; Provisional	96.93
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.8
KOG0977|consensus	546		96.64
PRK02224	880	chromosome segregation protein; Provisional	96.54
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.03
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	95.75
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	95.65
PF00038	312	Filament: Intermediate filament protein; InterPro:	95.6
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	95.6
PF06428	100	Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IP	95.49
PRK11637	428	AmiB activator; Provisional	95.17
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	94.92
KOG0996|consensus	1293		94.44
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	93.73
KOG0971|consensus	1243		93.55
KOG0971|consensus	1243		93.54
PRK09039	343	hypothetical protein; Validated	93.23
KOG0996|consensus	1293		93.18
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	92.91
COG4942	420	Membrane-bound metallopeptidase [Cell division and	92.78
PHA02562	562	46 endonuclease subunit; Provisional	92.54
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	92.44
KOG4674|consensus	1822		92.3
PRK04778	569	septation ring formation regulator EzrA; Provision	92.06
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	92.03
KOG0612|consensus	1317		91.99
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	91.9
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	91.81
PF06428	100	Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IP	91.48
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	90.86
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	89.2
KOG0933|consensus	1174		88.97
COG4026	290	Uncharacterized protein containing TOPRIM domain,	88.47
KOG0612|consensus	1317		88.13
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	88.03
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	87.87
KOG0976|consensus	1265		87.49
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	87.09
KOG0964|consensus	1200		86.69
PRK03918	880	chromosome segregation protein; Provisional	86.51
PRK04778	569	septation ring formation regulator EzrA; Provision	86.45
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	85.95
COG4026	290	Uncharacterized protein containing TOPRIM domain,	85.55
KOG0933|consensus	1174		85.47
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	82.79
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	82.05
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	81.65
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	80.92
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	80.62
KOG0994|consensus	1758		80.18
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	80.16

>KOG0161|consensus

Probab=99.78  E-value=9.7e-17  Score=161.00  Aligned_cols=193  Identities=40%  Similarity=0.504  Sum_probs=172.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhH-------
Q psy17852          2 LFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVE-------   74 (200)
Q Consensus         2 ~k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eE-------   74 (200)
                      +|++...++.+.+.++.+...++.|++++.+|+++++++..+++.....+..++++++.|+..+++|+...+.       
T Consensus      1381 kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~ 1460 (1930)
T KOG0161|consen 1381 KKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDA 1460 (1930)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999999999999999999999987763       


Q ss_pred             --------------------------HHHHHHHHHHHHHH---HHH--------HHHHHHHHHHHHHHHH----------
Q psy17852         75 --------------------------AELDDERKQKAAAL---ASR--------KKYEADYKDMEQQLEM----------  107 (200)
Q Consensus        75 --------------------------e~~e~~rk~l~~el---~~~--------~el~~~kk~lE~el~e----------  107 (200)
                                                +++.+.+++++.++   ..+        +++++.++.++.++.+          
T Consensus      1461 aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~ 1540 (1930)
T KOG0161|consen 1461 AQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEA 1540 (1930)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                      66777788888772   222        8899999999999777          


Q ss_pred             hhHHHHHH-----------------------------HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852        108 NNKLKEDA-----------------------------LKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQ  158 (200)
Q Consensus       108 ~~~~~ee~-----------------------------~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~q  158 (200)
                      ++++.+++                             -++++ .+|++++..|+.+.++++++.+.+|+|++|+++|+.+
T Consensus      1541 ~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~-~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ 1619 (1930)
T KOG0161|consen 1541 ALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQ-RQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQ 1619 (1930)
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHH
Confidence            22222222                             13788 8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHh
Q psy17852        159 LEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQ  195 (200)
Q Consensus       159 Le~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~~  195 (200)
                      ++++++.+.++.+.+++++.+++++|.+++++++++.
T Consensus      1620 ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~ 1656 (1930)
T KOG0161|consen 1620 LDHANKANEDAQKQLKKLQAQLKELQRELEDAQRARE 1656 (1930)
T ss_pred             HHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998875

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.78  E-value=2.2e-20  Score=178.96  Aligned_cols=193  Identities=40%  Similarity=0.504  Sum_probs=0.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhH-------
Q psy17852          2 LFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVE-------   74 (200)
Q Consensus         2 ~k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eE-------   74 (200)
                      .|+|...|.++...+++....+..|++.+++|+++++|+...++.....++.+++++++|+..+++|+..+++       
T Consensus       323 KKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~  402 (859)
T PF01576_consen  323 KKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDA  402 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            5889999999999999999999999999999999999999999999999999999999999999999987763       


Q ss_pred             --------------------------HHHHHHHHHHHHHHHH---H--------HHHHHHHHHHHHHHHH----------
Q psy17852         75 --------------------------AELDDERKQKAAALAS---R--------KKYEADYKDMEQQLEM----------  107 (200)
Q Consensus        75 --------------------------e~~e~~rk~l~~el~~---~--------~el~~~kk~lE~el~e----------  107 (200)
                                                +.+++.++.++.++..   +        +++++.++.||.++.+          
T Consensus       403 ~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~  482 (859)
T PF01576_consen  403 AQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAED  482 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                      6677788888888322   2        8899999999999987          


Q ss_pred             hhHHHHHH-----------------------------HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852        108 NNKLKEDA-----------------------------LKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQ  158 (200)
Q Consensus       108 ~~~~~ee~-----------------------------~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~q  158 (200)
                      ++...+++                             .++++ .+|++|+..||.+.+.+..+.+.+++|+++|++|+.+
T Consensus       483 ~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~q-r~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~  561 (859)
T PF01576_consen  483 ALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQ-RQLESLEAELEEERKERAEALREKKKLESDLNELEIQ  561 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222                             23778 8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHh
Q psy17852        159 LEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQ  195 (200)
Q Consensus       159 Le~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~~  195 (200)
                      |++++++...+.+.+++++.+|+++|.+++++++++.
T Consensus       562 ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~  598 (859)
T PF01576_consen  562 LDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRARE  598 (859)
T ss_dssp             -------------------------------------
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            9999999999999999999999999999999987764

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0161|consensus

Probab=99.47  E-value=3.2e-11  Score=121.99  Aligned_cols=188  Identities=26%  Similarity=0.364  Sum_probs=152.9

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhH--------
Q psy17852          3 FKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVE--------   74 (200)
Q Consensus         3 k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eE--------   74 (200)
                      +.+...+..+...+++....++.+.+.++.++.+++++..++.+.+.+++++++..+.++.++.+++..++|        
T Consensus      1466 r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~e 1545 (1930)
T KOG0161|consen 1466 RQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAE 1545 (1930)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            456778888888899999999999999999999999999999999999999999999999998888887764        


Q ss_pred             --------------------------HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH-------hhH
Q psy17852         75 --------------------------AELDDERKQKAAALASR-----------KKYEADYKDMEQQLEM-------NNK  110 (200)
Q Consensus        75 --------------------------e~~e~~rk~l~~el~~~-----------~el~~~kk~lE~el~e-------~~~  110 (200)
                                                ++++..+++++..+.+-           .++.+.||+|++++.+       +++
T Consensus      1546 E~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank 1625 (1930)
T KOG0161|consen 1546 EDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANK 1625 (1930)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence                                      66777888888774422           7888888888888887       788


Q ss_pred             HHHHH---HhhHHHHHHHHHHhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q psy17852        111 LKEDA---LKQLKKLQLREVEAELDDERKQKAAALASR-------KKYEADYKDMEQQLEMNNKLKEDALKQL-------  173 (200)
Q Consensus       111 ~~ee~---~r~l~~~qi~elq~~Leee~r~r~e~~~~~-------kklE~el~ele~qLe~a~r~~~~a~k~~-------  173 (200)
                      ...++   +++++ .+|+++|.++++..++..++..+.       ..+++++.+|...++.+.|++..++..+       
T Consensus      1626 ~~~d~~K~lkk~q-~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i 1704 (1930)
T KOG0161|consen 1626 ANEDAQKQLKKLQ-AQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERV 1704 (1930)
T ss_pred             hhHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            88888   67888 999999999999999999999665       4566777888888888888877776644       


Q ss_pred             --------------HHHHHHHHHHHHhhHHHH
Q psy17852        174 --------------KKLQVHELEKAKRLLESQ  191 (200)
Q Consensus       174 --------------~~l~~~i~elq~~lee~~  191 (200)
                                    +++.+.|.-|+..+++..
T Consensus      1705 ~~~~~~~s~l~~~KrklE~~i~~l~~elee~~ 1736 (1930)
T KOG0161|consen 1705 NELNAQNSSLTAEKRKLEAEIAQLQSELEEEQ 1736 (1930)
T ss_pred             HHHhhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence                          555666666666666654

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.36  E-value=8.7e-14  Score=133.84  Aligned_cols=189  Identities=26%  Similarity=0.381  Sum_probs=0.0

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhH--------
Q psy17852          3 FKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVE--------   74 (200)
Q Consensus         3 k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eE--------   74 (200)
                      +.+.+++..|...+++....+..+++.++.|+.++.||.+++++++.++|.|++.++.++.++.+++..+++        
T Consensus       408 r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~  487 (859)
T PF01576_consen  408 RELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAE  487 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777777788888888888888888888888888888888888888888888888777777766653        


Q ss_pred             --------------------------HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH-------hhH
Q psy17852         75 --------------------------AELDDERKQKAAALASR-----------KKYEADYKDMEQQLEM-------NNK  110 (200)
Q Consensus        75 --------------------------e~~e~~rk~l~~el~~~-----------~el~~~kk~lE~el~e-------~~~  110 (200)
                                                ++++..|++++..+.+.           +.+.+.|++||+++.+       +++
T Consensus       488 E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~  567 (859)
T PF01576_consen  488 EQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANR  567 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence                                      68888899999884333           7889999999999988       666


Q ss_pred             HHHHH---HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH---------
Q psy17852        111 LKEDA---LKQLKKLQLREVEAELDDERKQKAAALASRK-------KYEADYKDMEQQLEMNNKLKEDALK---------  171 (200)
Q Consensus       111 ~~ee~---~r~l~~~qi~elq~~Leee~r~r~e~~~~~k-------klE~el~ele~qLe~a~r~~~~a~k---------  171 (200)
                      ...+.   +++++ .+|+++|..+++..+.+.++.....       .|.+++.+++..++.+.+++..|+.         
T Consensus       568 ~~~e~~k~~kk~q-~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~  646 (859)
T PF01576_consen  568 ANEEAQKQLKKLQ-AQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERL  646 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67666   67888 9999999999999999988876653       4445555555555555555444444         


Q ss_pred             ------------HHHHHHHHHHHHHHhhHHHHH
Q psy17852        172 ------------QLKKLQVHELEKAKRLLESQL  192 (200)
Q Consensus       172 ------------~~~~l~~~i~elq~~lee~~~  192 (200)
                                  ..+++.+.|..|+.+|||...
T Consensus       647 ~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~  679 (859)
T PF01576_consen  647 NELTSQNSSLSEEKRKLEAEIQQLEEELEEEQS  679 (859)
T ss_dssp             ---------------------------------
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        455566666666666666543

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.54  E-value=0.037  Score=45.97  Aligned_cols=46  Identities=24%  Similarity=0.320  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy17852        146 KKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQ  191 (200)
Q Consensus       146 kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~  191 (200)
                      -.++..+..|...|..+......|++.+..|+..|..|...|....
T Consensus       172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k  217 (237)
T PF00261_consen  172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEK  217 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666666666666666666666666666666666665543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK02224 chromosome segregation protein; Provisional

Probab=97.53  E-value=0.083  Score=51.57  Aligned_cols=49  Identities=16%  Similarity=0.223  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhccC
Q psy17852        151 DYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQKNTC  199 (200)
Q Consensus       151 el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~~~~~~  199 (200)
                      ++.++...+..+......+...+..+++.+..+...++.....-..++|
T Consensus       406 ~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~C  454 (880)
T PRK02224        406 DLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKC  454 (880)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            3344444455555555555566666666666666666666544455666

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.36  E-value=0.064  Score=44.54  Aligned_cols=70  Identities=14%  Similarity=0.226  Sum_probs=39.8

Q ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17852        117 KQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRL  187 (200)
Q Consensus       117 r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~l  187 (200)
                      +.+. ..++.|+...+.....-.......+.|...+.+++...+.+.+....+++.+..+...+......+
T Consensus       151 ~~~~-~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~  220 (237)
T PF00261_consen  151 KSVG-NNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKY  220 (237)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444 445555555555555555555566666666666666666666666666666655555555444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.30  E-value=0.22  Score=49.45  Aligned_cols=54  Identities=31%  Similarity=0.501  Sum_probs=30.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Q psy17852          4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKK   57 (200)
Q Consensus         4 ~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~   57 (200)
                      .+..++..+...+..+...+..+......+..++..+...+......+..+...
T Consensus       674 ~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~  727 (1179)
T TIGR02168       674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQ  727 (1179)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666666666666666666555555555555555555544444443333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.29  E-value=0.18  Score=48.28  Aligned_cols=58  Identities=21%  Similarity=0.316  Sum_probs=43.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHh
Q psy17852          2 LFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQR   59 (200)
Q Consensus         2 ~k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r   59 (200)
                      +|+|..+|+.....=.+++.++..+.-.-+.+..+|..+..+.+.....++.|...+.
T Consensus       427 vkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq  484 (697)
T PF09726_consen  427 VKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQ  484 (697)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677777777777777888887777766677888888888888888777777765543

; GO: 0016021 integral to membrane

>KOG0977|consensus

Probab=97.08  E-value=0.2  Score=46.47  Aligned_cols=40  Identities=18%  Similarity=0.120  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHH
Q psy17852          7 KENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLET   46 (200)
Q Consensus         7 ~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~   46 (200)
                      .+|..|...|....+++-.|+-.++.|+.++..|..-+..
T Consensus        42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~   81 (546)
T KOG0977|consen   42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGR   81 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            4566677777777777777777777777776666655544

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=96.96  E-value=0.023  Score=37.36  Aligned_cols=59  Identities=19%  Similarity=0.239  Sum_probs=45.3

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852        126 EVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKA  184 (200)
Q Consensus       126 elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq  184 (200)
                      +||+.|+.+.+++..+....++..+..-.++..|.++...+..+...+..+..++.+++
T Consensus         1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r   59 (61)
T PF08826_consen    1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            58999999999999988888888888777887777777766666666666655555554

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PRK11637 AmiB activator; Provisional

Probab=96.93  E-value=0.28  Score=44.12  Aligned_cols=69  Identities=7%  Similarity=0.144  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852          5 QKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV   73 (200)
Q Consensus         5 L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e   73 (200)
                      +..++..+..++......+..+......++.++..+..++......+..++.....++..+..++..+.
T Consensus        45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~  113 (428)
T PRK11637         45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIA  113 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555555555555555555555555555555555555555555554444443

>TIGR00606 rad50 rad50

Probab=96.80  E-value=0.77  Score=47.13  Aligned_cols=44  Identities=16%  Similarity=0.160  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy17852        146 KKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE  189 (200)
Q Consensus       146 kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee  189 (200)
                      ..+..+..++..++...+..+..+...++.++.+|..|+.+|++
T Consensus      1050 ~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e 1093 (1311)
T TIGR00606      1050 LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            56788888899999999999999999999999999999999965

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0977|consensus

Probab=96.64  E-value=0.57  Score=43.48  Aligned_cols=188  Identities=19%  Similarity=0.180  Sum_probs=106.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh---------H
Q psy17852          4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV---------E   74 (200)
Q Consensus         4 ~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e---------E   74 (200)
                      .+.+++..+...+++.....+.++..-.+|..++.++...+++....+.........+..-+..+...+.         +
T Consensus        89 ~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le  168 (546)
T KOG0977|consen   89 KYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALE  168 (546)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence            3567888888888888888889998888999999999888888866555444444433333333332221         1


Q ss_pred             --------------HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhh---------HHHHHHHhhHH
Q psy17852         75 --------------AELDDERKQKAAALASRKKYEADYKDM-----------EQQLEMNN---------KLKEDALKQLK  120 (200)
Q Consensus        75 --------------e~~e~~rk~l~~el~~~~el~~~kk~l-----------E~el~e~~---------~~~ee~~r~l~  120 (200)
                                    .++...++.+..+.-.+..++-...-|           +++|.+..         ...+..-..|.
T Consensus       169 ~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~  248 (546)
T KOG0977|consen  169 DELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELA  248 (546)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHH
Confidence                          333344444443311111111111111           12222200         00000012667


Q ss_pred             HHHHHHHHhhhHHHHH-HHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852        121 KLQLREVEAELDDERK-QKAAALASRKK------------------YEADYKDMEQQLEMNNKLKEDALKQLKKLQVHEL  181 (200)
Q Consensus       121 ~~qi~elq~~Leee~r-~r~e~~~~~kk------------------lE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~  181 (200)
                       ..|+++.++.|.-.+ .|.++...++.                  .--++..+...+.......++++..-..|..+|.
T Consensus       249 -~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~  327 (546)
T KOG0977|consen  249 -LAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIE  327 (546)
T ss_pred             -HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHH
Confidence             778888888866544 46655555421                  2244555666666666666777777777777888


Q ss_pred             HHHHhhHHHHH
Q psy17852        182 EKAKRLLESQL  192 (200)
Q Consensus       182 elq~~lee~~~  192 (200)
                      +|..++++.++
T Consensus       328 dL~~ql~e~~r  338 (546)
T KOG0977|consen  328 DLEYQLDEDQR  338 (546)
T ss_pred             HHHhhhhhhhh
Confidence            88888777654

>PRK02224 chromosome segregation protein; Provisional

Probab=96.54  E-value=0.89  Score=44.45  Aligned_cols=53  Identities=25%  Similarity=0.378  Sum_probs=25.1

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHH
Q psy17852         16 KEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEE   68 (200)
Q Consensus        16 lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~   68 (200)
                      .+.....+..+++....++.++.++...+......++.++.....+..++.++
T Consensus       344 ~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el  396 (880)
T PRK02224        344 AESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL  396 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444445555555555555554444444444444444444443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.03  E-value=0.84  Score=39.04  Aligned_cols=34  Identities=21%  Similarity=0.262  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHH
Q psy17852          9 NEVLEREKEELQALNDKLEKSKKKLQSELDDITI   42 (200)
Q Consensus         9 l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~   42 (200)
                      +..|...+....+++..|+..++.|+.++..+..
T Consensus         6 L~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~   39 (312)
T PF00038_consen    6 LQSLNDRLASYIEKVRFLEQENKRLESEIEELRE   39 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence            3344444444444444444444444444443333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=95.75  E-value=2.7  Score=42.72  Aligned_cols=73  Identities=19%  Similarity=0.266  Sum_probs=49.5

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH
Q psy17852        122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAE  194 (200)
Q Consensus       122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~  194 (200)
                      ..|..++..+.+.......+......++..+..+..+++........+...+..+.....++..++.+.....
T Consensus       828 ~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~  900 (1163)
T COG1196         828 QEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESEL  900 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555555556667777777777777777777888888888888887777777765544

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=95.65  E-value=1.9  Score=40.18  Aligned_cols=27  Identities=22%  Similarity=0.230  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHhHhhcc
Q psy17852        172 QLKKLQVHELEKAKRLLESQLAEQKNT  198 (200)
Q Consensus       172 ~~~~l~~~i~elq~~lee~~~~~~~~~  198 (200)
                      .+.+|...+..+...|.+.+..|+|-+
T Consensus       372 ~ie~L~~el~~~e~~lqEer~E~qkL~  398 (546)
T PF07888_consen  372 EIEKLSRELQMLEEHLQEERMERQKLE  398 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777777777777788877777654

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=95.60  E-value=1.3  Score=37.92  Aligned_cols=61  Identities=26%  Similarity=0.358  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHH
Q psy17852          7 KENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAE   67 (200)
Q Consensus         7 ~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e   67 (200)
                      .++..+...+++...++......+..++.++..+...++........++.....+..++.-
T Consensus        75 ~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~f  135 (312)
T PF00038_consen   75 LEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEF  135 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444444444444444444444444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=95.60  E-value=3.1  Score=42.32  Aligned_cols=37  Identities=22%  Similarity=0.295  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHh
Q psy17852          7 KENEVLEREKEELQALNDKLEKSKKKLQSELDDITID   43 (200)
Q Consensus         7 ~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~   43 (200)
                      .++..+...+......+..+......+...+.++...
T Consensus       674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  710 (1163)
T COG1196         674 EELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQ  710 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444443333333333333333333333

>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []

Probab=95.49  E-value=0.18  Score=36.44  Aligned_cols=62  Identities=26%  Similarity=0.425  Sum_probs=55.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy17852        130 ELDDERKQKAAALASRKKYEADYKDMEQQL-EMNNKLKEDALKQLKKLQVHELEKAKRLLESQ  191 (200)
Q Consensus       130 ~Leee~r~r~e~~~~~kklE~el~ele~qL-e~a~r~~~~a~k~~~~l~~~i~elq~~lee~~  191 (200)
                      .|.++...+..+...+..+++++.+|...| ++||+..+.+.+..-.++.....|..++.+..
T Consensus         2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~   64 (100)
T PF06428_consen    2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKE   64 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788889999999999999999999999 99999999999988888888888888887754

It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.

>PRK11637 AmiB activator; Provisional

Probab=95.17  E-value=2.3  Score=38.27  Aligned_cols=71  Identities=13%  Similarity=0.164  Sum_probs=42.2

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852          3 FKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV   73 (200)
Q Consensus         3 k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e   73 (200)
                      +.+..++..+...+.........++.....+..++..+...+......+..++.....++..+..++..+.
T Consensus        50 ~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~  120 (428)
T PRK11637         50 KSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA  120 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555566666666666666666666666666666666666666666666666666666666665555544

>TIGR00606 rad50 rad50

Probab=94.92  E-value=5.3  Score=41.16  Aligned_cols=34  Identities=12%  Similarity=0.153  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHH
Q psy17852          7 KENEVLEREKEELQALNDKLEKSKKKLQSELDDI   40 (200)
Q Consensus         7 ~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl   40 (200)
                      .++..+...++.+...++.+......+..++..|
T Consensus       829 ~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L  862 (1311)
T TIGR00606       829 QEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL  862 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0996|consensus

Probab=94.44  E-value=6.3  Score=39.81  Aligned_cols=53  Identities=19%  Similarity=0.275  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Q psy17852          5 QKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKK   57 (200)
Q Consensus         5 L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~   57 (200)
                      +...+..+.+++-.++..+..++-...++..++..+...+......+.+++..
T Consensus       797 ~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~  849 (1293)
T KOG0996|consen  797 HQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAA  849 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555566666666666666666666667666666666666666666654

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=93.73  E-value=7.3  Score=37.98  Aligned_cols=73  Identities=16%  Similarity=0.287  Sum_probs=47.7

Q ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852        118 QLKKLQLREVEAELDDERKQKAAALAS-------RKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES  190 (200)
Q Consensus       118 ~l~~~qi~elq~~Leee~r~r~e~~~~-------~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~  190 (200)
                      .|+ ..|+.|...|+.....-+....+       +..+.+++.+|...++...+..+.+.+.+-.|...+.+=..++++.
T Consensus       340 ~Lq-sdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~  418 (775)
T PF10174_consen  340 MLQ-SDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEE  418 (775)
T ss_pred             HHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556 66777777776665554444433       4556677777777777777777777777777777776666666554


Q ss_pred             H
Q psy17852        191 Q  191 (200)
Q Consensus       191 ~  191 (200)
                      .
T Consensus       419 k  419 (775)
T PF10174_consen  419 K  419 (775)
T ss_pred             H
Confidence            4

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0971|consensus

Probab=93.55  E-value=8.3  Score=38.08  Aligned_cols=40  Identities=23%  Similarity=0.373  Sum_probs=23.0

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852        123 QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMN  162 (200)
Q Consensus       123 qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a  162 (200)
                      .+.-...++.+-.+.+.-+.+..-.+|+.+.+|+.|++.+
T Consensus       404 elE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA  443 (1243)
T KOG0971|consen  404 ELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA  443 (1243)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444445555555555555555556666666666666654

>KOG0971|consensus

Probab=93.54  E-value=8.4  Score=38.07  Aligned_cols=45  Identities=13%  Similarity=0.198  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852        146 KKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES  190 (200)
Q Consensus       146 kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~  190 (200)
                      .++..++.-....+++..+.+..+.+.+..++..|.+|++|+|-+
T Consensus       399 qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAA  443 (1243)
T KOG0971|consen  399 QKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAA  443 (1243)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345555555566677777777788888888888888888888764

>PRK09039 hypothetical protein; Validated

Probab=93.23  E-value=5.5  Score=35.01  Aligned_cols=64  Identities=22%  Similarity=0.237  Sum_probs=28.0

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852        127 VEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES  190 (200)
Q Consensus       127 lq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~  190 (200)
                      ++..|......-.++......+..++..|+.|+...+...+.++......+.+|.+|...|+..
T Consensus       121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444433334444444444444444444444444444444444444444444444444433

>KOG0996|consensus

Probab=93.18  E-value=11  Score=38.24  Aligned_cols=76  Identities=12%  Similarity=0.135  Sum_probs=58.4

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhc
Q psy17852        122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQKN  197 (200)
Q Consensus       122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~~~~  197 (200)
                      ..+.+++..|........+-......+...+..+...+..+.+....+-+..+.+..++..+...++|...+-++.
T Consensus       521 ~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~  596 (1293)
T KOG0996|consen  521 KKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSS  596 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5577788888777776666666667777888888888888888888888888888888888888888877755543

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=92.91  E-value=9.9  Score=37.12  Aligned_cols=44  Identities=14%  Similarity=0.266  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHH
Q psy17852         24 DKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAE   67 (200)
Q Consensus        24 ~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e   67 (200)
                      ...+-.+-.|+++++.|...++.....+.......-.+..+++-
T Consensus       332 ~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~  375 (775)
T PF10174_consen  332 RAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSR  375 (775)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455666666666666666555544444333333333333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=92.78  E-value=7.2  Score=35.20  Aligned_cols=68  Identities=25%  Similarity=0.307  Sum_probs=47.4

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy17852          3 FKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKL   70 (200)
Q Consensus         3 k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~   70 (200)
                      +.++.+|..+...+.........|++..+.+..++..+..++-.....+..+.+.+.-++..+..+..
T Consensus        41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~  108 (420)
T COG4942          41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV  108 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence            45667777777777777777777777777777777777777777766666666666666655555444

>PHA02562 46 endonuclease subunit; Provisional

Probab=92.54  E-value=8.6  Score=35.47  Aligned_cols=35  Identities=3%  Similarity=0.017  Sum_probs=16.5

Q ss_pred             HHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy17852         35 SELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEK   69 (200)
Q Consensus        35 ~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k   69 (200)
                      ..+.++...++........++.....+...+..+.
T Consensus       213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~  247 (562)
T PHA02562        213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLV  247 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444444454444444444444444444444443

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=92.44  E-value=3.9  Score=31.35  Aligned_cols=61  Identities=11%  Similarity=0.161  Sum_probs=28.4

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy17852        122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE  189 (200)
Q Consensus       122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee  189 (200)
                      +.|.-|+..|+........+       ...+.++....++..|....++.....+...+.+|..++.+
T Consensus        80 rriq~LEeele~ae~~L~e~-------~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~  140 (143)
T PF12718_consen   80 RRIQLLEEELEEAEKKLKET-------TEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE  140 (143)
T ss_pred             hhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            44455555554444333332       22233334444444555555555555555555555555544

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG4674|consensus

Probab=92.30  E-value=18  Score=38.51  Aligned_cols=65  Identities=18%  Similarity=0.380  Sum_probs=33.6

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHH
Q psy17852          3 FKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAE   67 (200)
Q Consensus         3 k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e   67 (200)
                      +.++..+..|...+.+.......+.-...--...+..|...++...+.+..|......|...+..
T Consensus       657 ~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~  721 (1822)
T KOG4674|consen  657 KKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISK  721 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555544444444445555555555555555555444445444443

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=92.06  E-value=11  Score=35.45  Aligned_cols=76  Identities=9%  Similarity=0.044  Sum_probs=63.0

Q ss_pred             HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Q psy17852        116 LKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQ----------LKKLQVHELEKAK  185 (200)
Q Consensus       116 ~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~----------~~~l~~~i~elq~  185 (200)
                      +..+. ..|+.|-..++.+..++..+.+...++...+..+..+..........+...          .+.+..+++.+..
T Consensus       284 ~~~i~-~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~  362 (569)
T PRK04778        284 NEEIQ-ERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEK  362 (569)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHH
Confidence            45777 889999999999999999999999889888888888888888877777777          7788888888888


Q ss_pred             hhHHHHH
Q psy17852        186 RLLESQL  192 (200)
Q Consensus       186 ~lee~~~  192 (200)
                      .+.....
T Consensus       363 ~~~~~~~  369 (569)
T PRK04778        363 QYDEITE  369 (569)
T ss_pred             HHHHHHH
Confidence            7775543

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=92.03  E-value=11  Score=35.34  Aligned_cols=38  Identities=24%  Similarity=0.394  Sum_probs=15.4

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Q psy17852         14 REKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKV   51 (200)
Q Consensus        14 ~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~   51 (200)
                      ..++........|.+.+..|+.++..+...++.....+
T Consensus       143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL  180 (546)
T PF07888_consen  143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAEL  180 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444444444444444444444433333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0612|consensus

Probab=91.99  E-value=16  Score=37.26  Aligned_cols=75  Identities=15%  Similarity=0.187  Sum_probs=48.1

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhh
Q psy17852        122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQK  196 (200)
Q Consensus       122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~~~  196 (200)
                      .++.++...|.++.-++..+.....++++++.-|...+-.+.-....+.+........+..|+.+|+.+..+|+.
T Consensus       700 ~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~  774 (1317)
T KOG0612|consen  700 AQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLS  774 (1317)
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            467777777777777776666666666666666666665555455555555556666666666666666665543

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=91.90  E-value=3.8  Score=29.92  Aligned_cols=59  Identities=12%  Similarity=0.211  Sum_probs=34.5

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852        122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHE  180 (200)
Q Consensus       122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i  180 (200)
                      .++..|+..|+...-+..++..++..|.+-+..|+.+.......+.+++..+..+-..+
T Consensus        16 n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l   74 (107)
T PF09304_consen   16 NRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL   74 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667777777777777777666666666666665555554444444444443333333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=91.81  E-value=17  Score=37.27  Aligned_cols=64  Identities=11%  Similarity=0.261  Sum_probs=31.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHH
Q psy17852          4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAE   67 (200)
Q Consensus         4 ~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e   67 (200)
                      .|..++..+...+......+..+++.-+.....+..+...+..........+.....+......
T Consensus       604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  667 (1201)
T PF12128_consen  604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQ  667 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3455555555555555555555555555555555555555544444444333333333333333

>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []

Probab=91.48  E-value=2.3  Score=30.75  Aligned_cols=59  Identities=22%  Similarity=0.329  Sum_probs=43.0

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhHHHHhH-HHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852         15 EKEELQALNDKLEKSKKKLQSELDDITIDL-ETQRAKVVDLEKKQRNFDKVLAEEKLREV   73 (200)
Q Consensus        15 ~lee~~~~~~~ler~kk~L~~El~dl~~~l-e~~~~~~~~lek~~r~~e~el~e~k~~~e   73 (200)
                      .+......+..++..+.++..|+++|+..| ++++..++.--+..-.++.....+...+.
T Consensus         2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~   61 (100)
T PF06428_consen    2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLK   61 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677888999999999999999999998 66787776655445455555444444443

It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=90.86  E-value=6  Score=30.33  Aligned_cols=139  Identities=22%  Similarity=0.329  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy17852         10 EVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALA   89 (200)
Q Consensus        10 ~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eEe~~e~~rk~l~~el~   89 (200)
                      ..|.-..+.+..+...++...+.|..+...+-..+......+..++...-.++..+.+.+..+++..-.         ..
T Consensus         3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~---------~~   73 (143)
T PF12718_consen    3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR---------KS   73 (143)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------HH
Confidence            344445555556566665555555555555555555544444444444444444445444444432100         00


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852         90 SRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMN  162 (200)
Q Consensus        90 ~~~el~~~kk~lE~el~e~~~~~ee~~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a  162 (200)
                      ....+.+.+.-||.+++.    .+..++-.. ..+++.....+...|....+....-.++..+..|..++..+
T Consensus        74 ~~E~l~rriq~LEeele~----ae~~L~e~~-ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~  141 (143)
T PF12718_consen   74 NAEQLNRRIQLLEEELEE----AEKKLKETT-EKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA  141 (143)
T ss_pred             hHHHHHhhHHHHHHHHHH----HHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            002344555555555533    111133333 44555555555555555555555555555555555555443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=89.20  E-value=7.6  Score=28.98  Aligned_cols=68  Identities=22%  Similarity=0.241  Sum_probs=54.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852          2 LFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV   73 (200)
Q Consensus         2 ~k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e   73 (200)
                      +-+|+..|..+..++..+...+..+...+..+..|+-.++...+........+    ..+..++.++..+++
T Consensus        18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~----~~L~~el~~l~~ry~   85 (120)
T PF12325_consen   18 VERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEV----EELEQELEELQQRYQ   85 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            45788899999999999999999999999999999999999888876554443    466666777776665

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0933|consensus

Probab=88.97  E-value=27  Score=35.04  Aligned_cols=52  Identities=17%  Similarity=0.225  Sum_probs=20.1

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852        125 REVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL  176 (200)
Q Consensus       125 ~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l  176 (200)
                      ..|+.++......-.........+.+++.++...+..+..-...++..+...
T Consensus       825 e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~  876 (1174)
T KOG0933|consen  825 EELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQ  876 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Confidence            3333333333333333333333444444444444444444344333333333

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=88.47  E-value=8.5  Score=31.94  Aligned_cols=69  Identities=23%  Similarity=0.293  Sum_probs=62.0

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852        122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES  190 (200)
Q Consensus       122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~  190 (200)
                      ....++...+++..+.+.++..-.-.+++++++++..|.......+.+..+++++-+.+.+|...+++-
T Consensus       135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL  203 (290)
T COG4026         135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL  203 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence            556777888899999999999999999999999999999999999999999999999999998887764

>KOG0612|consensus

Probab=88.13  E-value=33  Score=35.06  Aligned_cols=51  Identities=24%  Similarity=0.257  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhh
Q psy17852        144 SRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQK  196 (200)
Q Consensus       144 ~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~~~  196 (200)
                      ...+++..+.-++..+++.+......  .+..-..++.++...|.++..+|.|
T Consensus       668 ~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k  718 (1317)
T KOG0612|consen  668 LEIKLERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREK  718 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHH
Confidence            34456666666777776665555544  3333367888888888888888765

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=88.03  E-value=34  Score=35.11  Aligned_cols=59  Identities=17%  Similarity=0.277  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy17852         11 VLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEK   69 (200)
Q Consensus        11 ~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k   69 (200)
                      .|...+..+...+..+......++..+......+......+..........+..+..++
T Consensus       604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  662 (1201)
T PF12128_consen  604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLK  662 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            44444444555554444444444444444444444444444433333333333333333

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=87.87  E-value=27  Score=33.80  Aligned_cols=104  Identities=25%  Similarity=0.272  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhH-HHHHHHHHHH
Q psy17852          6 KKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVE-AELDDERKQK   84 (200)
Q Consensus         6 ~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eE-e~~e~~rk~l   84 (200)
                      ..+++.|.....++...+..++..+.+|..++.++...=...-....+|+..+-.+.+.+.-++..-.| +.+..+.+.+
T Consensus        54 ~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl  133 (717)
T PF09730_consen   54 QAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRL  133 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            344444555555555556666666666666666666665555666667777777777777776654443 5566666667


Q ss_pred             HHH---HHHH-HHHHHHHHHHHHHHHHhh
Q psy17852         85 AAA---LASR-KKYEADYKDMEQQLEMNN  109 (200)
Q Consensus        85 ~~e---l~~~-~el~~~kk~lE~el~e~~  109 (200)
                      ..+   +.++ .++.+.|.=.|.++++|+
T Consensus       134 ~Ee~~~l~~qlee~~rLk~iae~qleEAL  162 (717)
T PF09730_consen  134 EEEIELLNSQLEEAARLKEIAEKQLEEAL  162 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666   5555 678888888888888833

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0976|consensus

Probab=87.49  E-value=31  Score=33.96  Aligned_cols=62  Identities=19%  Similarity=0.239  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHH
Q psy17852          5 QKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLA   66 (200)
Q Consensus         5 L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~   66 (200)
                      +...+..+..++-.+..+|..++-.+..|+.-+.-+.+++......+..+...-..++.++.
T Consensus        97 lEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLs  158 (1265)
T KOG0976|consen   97 LEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELS  158 (1265)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            34455566667777777777777777777777777766666655555444433333333333

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=87.09  E-value=12  Score=28.74  Aligned_cols=44  Identities=23%  Similarity=0.388  Sum_probs=19.8

Q ss_pred             HHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852         30 KKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV   73 (200)
Q Consensus        30 kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e   73 (200)
                      ...|..+++.++..+......+..+-..+..+++.+..++.++.
T Consensus        54 ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~   97 (140)
T PF10473_consen   54 IETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVS   97 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444444443

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0964|consensus

Probab=86.69  E-value=37  Score=34.06  Aligned_cols=29  Identities=14%  Similarity=0.311  Sum_probs=16.4

Q ss_pred             HhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy17852        116 LKQLKKLQLREVEAELDDERKQKAAALASR  145 (200)
Q Consensus       116 ~r~l~~~qi~elq~~Leee~r~r~e~~~~~  145 (200)
                      +.++. ..|+.|...+..-...+-++...+
T Consensus       787 l~kLn-~eI~~l~~kl~~~~~er~~~~~rk  815 (1200)
T KOG0964|consen  787 LSKLN-KEINKLSVKLRALREERIDIETRK  815 (1200)
T ss_pred             HHHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666 666666666665555554444333

>PRK03918 chromosome segregation protein; Provisional

Probab=86.51  E-value=34  Score=33.45  Aligned_cols=21  Identities=14%  Similarity=0.090  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhH
Q psy17852        168 DALKQLKKLQVHELEKAKRLL  188 (200)
Q Consensus       168 ~a~k~~~~l~~~i~elq~~le  188 (200)
                      .+...+..+...+.+|...++
T Consensus       409 ~l~~~~~~~~~~i~eL~~~l~  429 (880)
T PRK03918        409 KITARIGELKKEIKELKKAIE  429 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333334444443333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=86.45  E-value=29  Score=32.57  Aligned_cols=69  Identities=23%  Similarity=0.243  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852          5 QKKENEVLEREKEELQALN-----DKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV   73 (200)
Q Consensus         5 L~~~l~~l~~~lee~~~~~-----~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e   73 (200)
                      +..+|..+...+......+     ...+.....+...++.|...++....+....++....+...+...+....
T Consensus       254 i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~  327 (569)
T PRK04778        254 IEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNK  327 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4566677777776644443     45556677888888888888888888888888888777777776665444

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=85.95  E-value=35  Score=33.09  Aligned_cols=69  Identities=22%  Similarity=0.212  Sum_probs=32.5

Q ss_pred             HHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhH------------HHHHHHHHHHHH
Q psy17852         19 LQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVE------------AELDDERKQKAA   86 (200)
Q Consensus        19 ~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eE------------e~~e~~rk~l~~   86 (200)
                      +..++..|+-.-+.+..+++......+.......++-+....++.+...++..+-+            .+++.++-.|+.
T Consensus        32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQK  111 (717)
T PF09730_consen   32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQK  111 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444444444444333333322            456666666666


Q ss_pred             H
Q psy17852         87 A   87 (200)
Q Consensus        87 e   87 (200)
                      .
T Consensus       112 q  112 (717)
T PF09730_consen  112 Q  112 (717)
T ss_pred             H
Confidence            6

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=85.55  E-value=14  Score=30.66  Aligned_cols=65  Identities=23%  Similarity=0.280  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHhhHHHHHHH-------HHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhH
Q psy17852         10 EVLEREKEELQALNDKLEKSK-------KKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVE   74 (200)
Q Consensus        10 ~~l~~~lee~~~~~~~ler~k-------k~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eE   74 (200)
                      .++++.+++...++.++.+.+       -.|+++++++...+.......+.|+...+++.-++..++.++++
T Consensus       131 ~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E  202 (290)
T COG4026         131 MDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE  202 (290)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence            345555555555555554444       44455555555555555555555555555666666666666664

>KOG0933|consensus

Probab=85.47  E-value=43  Score=33.69  Aligned_cols=61  Identities=13%  Similarity=0.168  Sum_probs=30.6

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852        123 QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEK  183 (200)
Q Consensus       123 qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~el  183 (200)
                      ...-|+.+.++..+...-...+.-.++..+..+..++.........+.....+++..+++.
T Consensus       816 e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~  876 (1174)
T KOG0933|consen  816 EYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQ  876 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHH
Confidence            3444455555555555544444445555555555555555555555555555555554443

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=82.79  E-value=11  Score=24.71  Aligned_cols=56  Identities=11%  Similarity=0.077  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy17852        137 QKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQL  192 (200)
Q Consensus       137 ~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~  192 (200)
                      +...=++.+..+..+|+.+....-.+.....++....+.|..+|..|..++++.+.
T Consensus         5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~   60 (61)
T PF08826_consen    5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            34455677788899999999999999999999999999999999999999998764

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=82.05  E-value=48  Score=31.61  Aligned_cols=14  Identities=7%  Similarity=0.095  Sum_probs=5.7

Q ss_pred             chHHHHHHHHHHHH
Q psy17852          3 FKQKKENEVLEREK   16 (200)
Q Consensus         3 k~L~~~l~~l~~~l   16 (200)
                      +.|+.+-+.+...+
T Consensus         7 ~qlq~Erd~ya~~l   20 (617)
T PF15070_consen    7 KQLQAERDQYAQQL   20 (617)
T ss_pred             HHHHHHHHHHHHHH
Confidence            34444444443333

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=81.65  E-value=9.2  Score=23.42  Aligned_cols=42  Identities=24%  Similarity=0.420  Sum_probs=32.8

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhH
Q psy17852          3 FKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDL   44 (200)
Q Consensus         3 k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~l   44 (200)
                      |.|......|....+.+....+.|.+.+..|..++..|...+
T Consensus         1 KQlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl   42 (45)
T PF02183_consen    1 KQLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL   42 (45)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            456777788888888888888888888888888887776544

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=80.92  E-value=14  Score=24.73  Aligned_cols=62  Identities=23%  Similarity=0.232  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHH
Q psy17852          4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVL   65 (200)
Q Consensus         4 ~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el   65 (200)
                      .|.+.+..|...++-+..++...+-..+.|..|-+-+..++..+...+..|-...-.+..++
T Consensus         2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el   63 (69)
T PF14197_consen    2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL   63 (69)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57788889999999998888888888889999888888888877766666554444444433

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=80.62  E-value=12  Score=24.84  Aligned_cols=45  Identities=22%  Similarity=0.205  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy17852        147 KYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQ  191 (200)
Q Consensus       147 klE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~  191 (200)
                      .||..+.-.+..++..|.....-++.+..++.++..|...+.+..
T Consensus         8 ~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    8 ELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            355555555555555555555555666666666666665555543

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>KOG0994|consensus

Probab=80.18  E-value=76  Score=32.72  Aligned_cols=63  Identities=19%  Similarity=0.201  Sum_probs=33.2

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852        122 LQLREVEAELDDERKQKAAALASRKKYEADYKD-------MEQQLEMNNKLKEDALKQLKKLQVHELEKA  184 (200)
Q Consensus       122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~e-------le~qLe~a~r~~~~a~k~~~~l~~~i~elq  184 (200)
                      .++++....|++..++-..+....+-.-.++..       .+..+..+++....+.+++.+|...+.+|+
T Consensus      1563 ~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1563 GQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELK 1632 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666777776666666665555444444333       444444444444444444444444444444

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=80.16  E-value=51  Score=30.66  Aligned_cols=139  Identities=24%  Similarity=0.303  Sum_probs=72.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH--HhhhhHHHHHHHHHhhH-------
Q psy17852          4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKK--QRNFDKVLAEEKLREVE-------   74 (200)
Q Consensus         4 ~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~--~r~~e~el~e~k~~~eE-------   74 (200)
                      ..+.+|.-+.+.+..+..++...+..+-+.-.||+....-+++....+......  .-.-+.++..++..-.+       
T Consensus        31 ~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~  110 (522)
T PF05701_consen   31 EKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEA  110 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccc
Confidence            356677777788888888877777777777777766666666655544322211  11122233333321111       


Q ss_pred             -----HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---hhHHHHHH----------HhhHHHHHHHHHHhhhH
Q psy17852         75 -----AELDDERKQKAAALASR----KKYEADYKDMEQQLEM---NNKLKEDA----------LKQLKKLQLREVEAELD  132 (200)
Q Consensus        75 -----e~~e~~rk~l~~el~~~----~el~~~kk~lE~el~e---~~~~~ee~----------~r~l~~~qi~elq~~Le  132 (200)
                           .+++..+..+...+...    .+|.+.+..+..-++.   +....+++          .--|. ..|..+...|+
T Consensus       111 ~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~-~Ei~~lke~l~  189 (522)
T PF05701_consen  111 SVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELS-KEIIALKESLE  189 (522)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence                 23344444444442222    5666666666665554   44444444          12444 45555555555


Q ss_pred             HHHHHHHHHHH
Q psy17852        133 DERKQKAAALA  143 (200)
Q Consensus       133 ee~r~r~e~~~  143 (200)
                      ...-...++..
T Consensus       190 ~~~~a~~eAee  200 (522)
T PF05701_consen  190 SAKLAHIEAEE  200 (522)
T ss_pred             HHHHHHHHHHH
Confidence            55444444443

Several sequences in this family are described as being myosin heavy chain-like.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-09
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	1e-06
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	4e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 72.9 bits (179), Expect = 2e-15
 Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 10/197 (5%)

Query: 4    KQKKENEV--LEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNF 61
            K   + ++  +E +   ++  N+KL K +K L+  + D+T +L  +  K  +L K +   
Sbjct: 978  KVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH 1037

Query: 62   DKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKK 121
                 E  + E+E  L  E K +      ++K E +  D+ +Q+        +   QL K
Sbjct: 1038 -----ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092

Query: 122  LQ--LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVH 179
             +  L+   A L+DE  QK  AL   ++ E+   D+++ LE     +  A KQ + L   
Sbjct: 1093 KEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLS-E 1151

Query: 180  ELEKAKRLLESQLAEQK 196
            ELE  K  LE  L    
Sbjct: 1152 ELEALKTELEDTLDTTA 1168

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 64.9 bits (158), Expect = 1e-12
 Identities = 33/198 (16%), Positives = 82/198 (41%), Gaps = 21/198 (10%)

Query: 2    LFKQKKENEVLEREKEELQ--------------ALNDKLEKSKKKLQSELDDITIDLETQ 47
            +   + +N  L +E++ L+                   L K K K +S + ++ + L+ +
Sbjct: 992  ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKE 1051

Query: 48   RAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEM 107
                 +LEK +R       E +  ++  ++ + + Q A   A   K E + +    +LE 
Sbjct: 1052 EKSRQELEKIKRKL-----EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED 1106

Query: 108  NNKLKEDALKQLKKLQLR--EVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKL 165
                K +ALK++++L+    +++ +L+ E+  +  A   ++    + + ++ +LE     
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDT 1166

Query: 166  KEDALKQLKKLQVHELEK 183
                 +        + +K
Sbjct: 1167 TATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 64.9 bits (158), Expect = 1e-12
 Identities = 37/191 (19%), Positives = 93/191 (48%), Gaps = 5/191 (2%)

Query: 4    KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
            + + E + ++++  +L+   ++ E +++KLQ E       ++     ++ +E +     K
Sbjct: 945  QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK 1004

Query: 64   V--LAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKK 121
               L EE++ ++   L +E ++       + K+E+   ++E +L+   K +++  K  +K
Sbjct: 1005 ERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRK 1064

Query: 122  L--QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVH 179
            L  +  ++  ++ + + Q A   A   K E + +    +LE     K +ALK++++L+  
Sbjct: 1065 LEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELE-S 1123

Query: 180  ELEKAKRLLES 190
             +   +  LES
Sbjct: 1124 HISDLQEDLES 1134

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 62.2 bits (151), Expect = 1e-11
 Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 8/188 (4%)

Query: 12   LEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLR 71
            +E   EE +  + +L+  KKK+Q ++ D+   LE + A    L+      +KV A+ K++
Sbjct: 932  MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQL-----EKVTADGKIK 986

Query: 72   EVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL--QLREVEA 129
            ++E ++     Q       RK  E    D+   L    +  ++  K   K    + E+E 
Sbjct: 987  KMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEV 1046

Query: 130  ELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE 189
             L  E K +      ++K E +  D+ +Q+        +   QL K +  EL+ A   LE
Sbjct: 1047 RLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKE-EELQAALARLE 1105

Query: 190  SQLAEQKN 197
             + +++ N
Sbjct: 1106 DETSQKNN 1113

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.8 bits (132), Expect = 4e-09
 Identities = 45/199 (22%), Positives = 88/199 (44%), Gaps = 12/199 (6%)

Query: 1    MLFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRN 60
             L + K+  +  E E +EL+  + +L + K  LQ +L       ET+     +  + +  
Sbjct: 865  ELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQA-----ETELYAEAEEMRVRLA 919

Query: 61   FDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLK 120
              K   EE L E+EA +++E ++     A +KK +    D+E+QLE     ++    +  
Sbjct: 920  AKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKV 979

Query: 121  KL--QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQV 178
                +++++E ++     Q       RK  E    D+   L      +E+  K L KL+ 
Sbjct: 980  TADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA----EEEEKAKNLTKLK- 1034

Query: 179  HELEKAKRLLESQLAEQKN 197
            ++ E     LE +L +++ 
Sbjct: 1035 NKHESMISELEVRLKKEEK 1053

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.8 bits (106), Expect = 8e-06
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 1    MLFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRN 60
             L K+++E +      E+  +  +   K  ++L+S + D+  DLE+++A     EK++R+
Sbjct: 1089 QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD 1148

Query: 61   FDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKD 100
                   E+L  ++ EL+D     A     R     D  D
Sbjct: 1149 L-----SEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 19/136 (13%), Positives = 55/136 (40%), Gaps = 4/136 (2%)

Query: 67  EEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL--QL 124
           +E+L+  +        +         +   +   ++++L+   +L  +A +   +L  + 
Sbjct: 863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922

Query: 125 REVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQ--VHELE 182
           +E+E  L +   +        ++ +A+ K M+QQ+    +  E+     +KLQ      +
Sbjct: 923 QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982

Query: 183 KAKRLLESQLAEQKNT 198
              + +E  +   ++ 
Sbjct: 983 GKIKKMEDDILIMEDQ 998

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 64.4 bits (157), Expect = 2e-12
 Identities = 36/195 (18%), Positives = 75/195 (38%), Gaps = 24/195 (12%)

Query: 2    LFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNF 61
            L K K E   +ER K+    L+  LE    +LQ ++D+   + ++   K+ +LE      
Sbjct: 906  LKKLKIEARSVERYKK----LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT---- 957

Query: 62   DKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKK 121
                  EKLR     L    ++   A       + +   + ++L      K+   +   K
Sbjct: 958  -YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016

Query: 122  LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHEL 181
             +  E E  + + ++Q                 ++ + E  N+   D  K++ +    +L
Sbjct: 1017 YK-HETEQLVSELKEQN--------------TLLKTEKEELNRRIHDQAKEITETMEKKL 1061

Query: 182  EKAKRLLESQLAEQK 196
             +  + LE  L +++
Sbjct: 1062 VEETKQLELDLNDER 1076

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 57.4 bits (139), Expect = 4e-10
 Identities = 28/161 (17%), Positives = 68/161 (42%), Gaps = 7/161 (4%)

Query: 4    KQKKENEV--LEREKEELQALNDKLEKSKKKLQSELDDITIDLET--QRAKVVDLEKKQR 59
                EN++  L+R+ +E       L +    L+      T  L +  +R ++ + E K  
Sbjct: 923  HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNA 982

Query: 60   NFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQL 119
                +  +E++ ++  EL   + +K        KY+ + + +  +L+  N L +   ++L
Sbjct: 983  TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEEL 1042

Query: 120  KKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLE 160
             + ++ +   E+ +  ++K       K+ E D  D   + +
Sbjct: 1043 NR-RIHDQAKEITETMEKKLV--EETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 28/214 (13%), Positives = 66/214 (30%), Gaps = 24/214 (11%)

Query: 1    MLFKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDIT--IDLETQRAKVVDLEKKQ 58
            M         +L       +      E     +Q  +      +        +V L+   
Sbjct: 838  MRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCY 897

Query: 59   RNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQ 118
            R        +KL+     ++  +K            E     ++++++  NK  +  L++
Sbjct: 898  RRMMAKRELKKLKIEARSVERYKKLH-------IGLENKIMQLQRKIDEQNKEYKSLLEK 950

Query: 119  LKKLQ---------LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDA 169
            +  L+         LR     L    ++   A       + +   + ++L      K+  
Sbjct: 951  MNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010

Query: 170  LKQLKKLQ------VHELEKAKRLLESQLAEQKN 197
             +   K +      V EL++   LL+++  E   
Sbjct: 1011 EEWADKYKHETEQLVSELKEQNTLLKTEKEELNR 1044

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 32/189 (16%), Positives = 62/189 (32%), Gaps = 15/189 (7%)

Query: 3    FKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFD 62
             +  K    +         ++      +K  Q   + + I+L+ Q+   V L+K  R   
Sbjct: 837  LRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILK 896

Query: 63   KVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKL 122
            K+      + V    ++      A  A  K  EA   + +     +N      L QL +L
Sbjct: 897  KLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTEL 956

Query: 123  QLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELE 182
                V     +  ++K    A +         ++   E     K   L +L++LQ  ++E
Sbjct: 957  NYNGVP----ELTERKDTFFAQQWT------GVKSSAE---TYKNTLLAELERLQ--KIE 1001

Query: 183  KAKRLLESQ 191
                     
Sbjct: 1002 DLHHHHHHH 1010

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 1e-07
 Identities = 32/205 (15%), Positives = 74/205 (36%), Gaps = 39/205 (19%)

Query: 1   MLFKQKKENEVLEREKEELQALNDK--LEKSKKKLQSELDDITIDLETQRAKVVDLEKK- 57
           +++    +++V       +  L+    +EK  K+    +  I ++L+ +      L +  
Sbjct: 394 LIWFDVIKSDV----MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Query: 58  --QRNFDKVLAEEKLREVEAELDD-------------ERKQKAAALASRKKYEADYKDME 102
               N  K    + L  +   LD              E  ++      R  +  D++ +E
Sbjct: 450 VDHYNIPKTFDSDDL--IPPYLDQYFYSHIGHHLKNIEHPERMTLF--RMVF-LDFRFLE 504

Query: 103 QQLEMNNKLKE------DALKQLKKLQLREVEAELDDERKQKA----AALASRKKYEADY 152
           Q++  ++          + L+QLK  +    + +   ER   A              + Y
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564

Query: 153 KDMEQQLEM--NNKLKEDALKQLKK 175
            D+ +   M  +  + E+A KQ+++
Sbjct: 565 TDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 29/235 (12%), Positives = 67/235 (28%), Gaps = 63/235 (26%)

Query: 1   MLFKQKKENE---VLE--REKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLE 55
            L K K       VL   +  +   A N      K  L +    +T  L       + L+
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFN---LSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 56  KKQRNFDKVLAEEKLRE-VEAELDDERKQK-----------AAAL---ASRKKY--EADY 98
                      +  L + ++    D  ++            A ++    +        + 
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 99  KDMEQQLEMN-NKLKEDALKQL---------------KKLQL-------REVEAELDDER 135
             +   +E + N L+    +++                 L L        +V   ++   
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 136 KQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES 190
           K    +L  ++  E+        LE+  KL+ +         +H     + +++ 
Sbjct: 413 KY---SLVEKQPKESTISIPSIYLELKVKLENEY-------ALH-----RSIVDH 452

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 20/175 (11%), Positives = 69/175 (39%), Gaps = 23/175 (13%)

Query: 11   VLEREKEELQALNDKLEKSKKKL---QSELDDITIDLETQRAKVVDLEKKQRNFDKVL-- 65
            ++  ++++L+     L    KKL   ++++ D+ + L  +     +L+ K    ++ L  
Sbjct: 1907 LINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKN---RELDVKNEQANQKLKQ 1963

Query: 66   -------AEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKE----- 113
                   AE K ++          +       + K  AD +  E    +  ++++     
Sbjct: 1964 MVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAA 2023

Query: 114  -DALKQLKKLQ--LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKL 165
             +   +  ++   +  +E  +   +++ A  +   ++ + +   ++ +++ +  L
Sbjct: 2024 NELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIAL 2078

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 15/99 (15%), Positives = 26/99 (26%), Gaps = 3/99 (3%)

Query: 4   KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDK 63
                +         +QA    LE    + QS       DL +  A+   L +   N   
Sbjct: 898 SVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQ---LTELNYNGVP 954

Query: 64  VLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDME 102
            L E K      +    +        +        + +E
Sbjct: 955 ELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIE 993

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	97.33
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.3
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.29
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	97.24
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	97.1
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	96.71
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.05
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.03
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	95.98
3bas_A	89	Myosin heavy chain, striated muscle/general contro	95.92
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	95.61
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.6
3bas_A	89	Myosin heavy chain, striated muscle/general contro	95.37
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	95.22
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	94.88
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	94.48
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	93.55
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	92.75
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	90.67
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	90.28
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	89.97
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	88.48
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	88.3
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	88.0
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	87.08
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	86.85
2ke4_A	98	CDC42-interacting protein 4; CIP4, TC10, coiled-co	86.55
1d7m_A	101	Cortexillin I; coiled-coil, coiled-coil trigger si	83.42
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	82.41
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	82.29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	81.14
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	80.55
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	80.52
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	80.12

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=97.33  E-value=0.026  Score=41.55  Aligned_cols=42  Identities=19%  Similarity=0.255  Sum_probs=26.9

Q ss_pred             HHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q psy17852         31 KKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLRE   72 (200)
Q Consensus        31 k~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~   72 (200)
                      +.+..++..+...+.........++.....+..+.+.+...+
T Consensus        16 ~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL   57 (129)
T 2fxo_A           16 ASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQV   57 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666777777777777777777666666666555433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.30  E-value=0.001  Score=65.47  Aligned_cols=69  Identities=20%  Similarity=0.229  Sum_probs=0.0

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852        122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES  190 (200)
Q Consensus       122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~  190 (200)
                      .++.+++..++.......++......++.++..++.++.........+...+..++..+..++..+++.
T Consensus      1039 ~el~ele~~le~~e~~~~ele~~~~~le~el~~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l 1107 (1184)
T 1i84_S         1039 SMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDE 1107 (1184)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555666666666666666666666666666666666666666666554

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.29  E-value=0.0013  Score=64.85  Aligned_cols=74  Identities=18%  Similarity=0.247  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy17852        118 QLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQL  192 (200)
Q Consensus       118 ~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~  192 (200)
                      .+. ..+..++..+.........+...+.+++..+.+++..++.....+..+......+..++.+++.++++...
T Consensus      1008 ~le-~~i~~l~~~l~~~e~k~~~lek~~~~le~el~ele~~le~~e~~~~ele~~~~~le~el~~l~~el~el~~ 1081 (1184)
T 1i84_S         1008 LLE-ERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQA 1081 (1184)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445 55666666676666666666667777788888888888888877777777777777777777777665543

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=97.24  E-value=0.033  Score=40.99  Aligned_cols=66  Identities=20%  Similarity=0.283  Sum_probs=50.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhh
Q psy17852        131 LDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQK  196 (200)
Q Consensus       131 Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~~~  196 (200)
                      +.+..-.+..+...+..|++.+.++...++........+....++++..+.+|..++++...+++|
T Consensus        64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~~l~K  129 (129)
T 2fxo_A           64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLAK  129 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            333333444445555678888888888888888888888888899999999999999888887765

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=97.10  E-value=0.017  Score=40.40  Aligned_cols=69  Identities=16%  Similarity=0.279  Sum_probs=63.4

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852        122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQL-EMNNKLKEDALKQLKKLQVHELEKAKRLLES  190 (200)
Q Consensus       122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qL-e~a~r~~~~a~k~~~~l~~~i~elq~~lee~  190 (200)
                      ..+..|...|.++...|..+...+++++.+|.+|...| ++||.+.+.+.+..-.++.+...|+.+|.|-
T Consensus        26 ~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d~   95 (97)
T 2eqb_B           26 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREK   95 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            66888999999999999999999999999999999886 7889999999999999999999999998774

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=96.71  E-value=0.15  Score=40.05  Aligned_cols=22  Identities=18%  Similarity=0.160  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Q psy17852        166 KEDALKQLKKLQVHELEKAKRL  187 (200)
Q Consensus       166 ~~~a~k~~~~l~~~i~elq~~l  187 (200)
                      ...+...+..+...+..+...+
T Consensus       218 ~~~~~~~l~~l~~~~~~~~~~~  239 (284)
T 1c1g_A          218 EDKYEEEIKVLSDKLKEAETRA  239 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.05  E-value=0.35  Score=37.08  Aligned_cols=60  Identities=13%  Similarity=0.103  Sum_probs=28.9

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852        122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHEL  181 (200)
Q Consensus       122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~  181 (200)
                      ..+-.||+.|+.+++.+.-.....+.+++.+..|+..++...-.-..+.-..+.|+..|.
T Consensus        69 ke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~  128 (168)
T 3o0z_A           69 KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLN  128 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555555555555555555555555555554444444444444444433333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.03  E-value=0.35  Score=37.04  Aligned_cols=55  Identities=15%  Similarity=0.181  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhc
Q psy17852        143 ASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAEQKN  197 (200)
Q Consensus       143 ~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~~~~  197 (200)
                      ..+-.++.++..|+.+|+...+.+......+..++++|..|+..++......+|.
T Consensus        62 ~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~  116 (168)
T 3o0z_A           62 NSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV  116 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344589999999999999999999999999999999999999999887766654

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=95.98  E-value=0.14  Score=34.38  Aligned_cols=61  Identities=18%  Similarity=0.221  Sum_probs=53.8

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852        124 LREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKA  184 (200)
Q Consensus       124 i~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq  184 (200)
                      +-+||+.|+.+.+++..+.....+..+.+-.++..|-++...+..+...+..+..++.+|+
T Consensus        12 ~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq   72 (81)
T 1wt6_A           12 LRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ   72 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4589999999999999999999999999999999998888888888888888888887765

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=95.92  E-value=0.15  Score=34.94  Aligned_cols=73  Identities=14%  Similarity=0.098  Sum_probs=65.9

Q ss_pred             HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy17852        116 LKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLE  189 (200)
Q Consensus       116 ~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee  189 (200)
                      ++... ..+..+...+......+.++.....++..+.++|..++.++.-.+..+......|..+++++...+++
T Consensus        16 m~~~e-eel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~e   88 (89)
T 3bas_A           16 MKEQL-KQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVGE   88 (89)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            55666 77888999999999999999999999999999999999999999999999999999999999888764

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.61  E-value=0.35  Score=33.72  Aligned_cols=55  Identities=11%  Similarity=0.192  Sum_probs=33.0

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q psy17852         16 KEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKL   70 (200)
Q Consensus        16 lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~   70 (200)
                      ++.+...+..++........++..|...+.+........+..+..++.++.++-.
T Consensus         7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa   61 (97)
T 2eqb_B            7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA   61 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555566666666666666666666666666666666665555

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.60  E-value=0.85  Score=44.59  Aligned_cols=50  Identities=10%  Similarity=0.163  Sum_probs=7.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHh----hhhHHHHHHHHHhh
Q psy17852         24 DKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQR----NFDKVLAEEKLREV   73 (200)
Q Consensus        24 ~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r----~~e~el~e~k~~~e   73 (200)
                      ..+.+.+..|+..+.+|...+++.......|.....    .+..++..++..++
T Consensus       917 ~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~  970 (1080)
T 2dfs_A          917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE  970 (1080)
T ss_dssp             ----------------------------------CHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            344555677777777777777776666665554432    34445555554444

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=95.37  E-value=0.24  Score=33.90  Aligned_cols=71  Identities=17%  Similarity=0.194  Sum_probs=57.6

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852          3 FKQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV   73 (200)
Q Consensus         3 k~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e   73 (200)
                      +.+..++..+.+.+.........++.....|..+..+|..++.++...+..|...+..++..+.++..+++
T Consensus        17 ~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~   87 (89)
T 3bas_A           17 KEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG   87 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45667777788888888888888888888899999999988888888888888888888888887776654

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.22  E-value=0.71  Score=34.89  Aligned_cols=69  Identities=16%  Similarity=0.279  Sum_probs=43.7

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852        122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQL-EMNNKLKEDALKQLKKLQVHELEKAKRLLES  190 (200)
Q Consensus       122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qL-e~a~r~~~~a~k~~~~l~~~i~elq~~lee~  190 (200)
                      ..+..|...|.++...|..+...++++++++.+|...| ++||.+.+.+.+..-.++.++..|..++.+.
T Consensus        58 ~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~  127 (154)
T 2ocy_A           58 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREK  127 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566667777777777777777777777777777665 5666666666555555554444444444443

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=94.88  E-value=0.087  Score=38.98  Aligned_cols=71  Identities=15%  Similarity=0.273  Sum_probs=61.4

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy17852        122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQL-EMNNKLKEDALKQLKKLQVHELEKAKRLLESQL  192 (200)
Q Consensus       122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qL-e~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~  192 (200)
                      ..+..|...|.++...|..+...+++++.++.+|...| ++||.+.+.+.+..-.++.++..|..++.+...
T Consensus        46 ~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~  117 (135)
T 2e7s_A           46 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDM  117 (135)
T ss_dssp             HHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66788889999999999999999999999999999886 788999998888888888888888888776543

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=94.48  E-value=6.7  Score=42.61  Aligned_cols=72  Identities=4%  Similarity=0.131  Sum_probs=57.4

Q ss_pred             HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy17852        116 LKQLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLL  188 (200)
Q Consensus       116 ~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~le  188 (200)
                      +...+ ..|.+++..|..-...-+.+...+..++.++..++..|+-|.+...-+..+...+...+..+..++.
T Consensus      2030 L~~~~-~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~ 2101 (3245)
T 3vkg_A         2030 QDEIV-ATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMS 2101 (3245)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence            44555 6677777777777777777777888888888888999998988888888888888888888877654

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=93.55  E-value=1.8  Score=32.68  Aligned_cols=73  Identities=15%  Similarity=0.172  Sum_probs=63.3

Q ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy17852        118 QLKKLQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQ  191 (200)
Q Consensus       118 ~l~~~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~  191 (200)
                      .+. .+|+.|...|.+.......+.+...+|+.++..++..|.........+...+...-..+..++..+..-.
T Consensus        74 ~yE-eqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~  146 (155)
T 2efr_A           74 KYE-EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLE  146 (155)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence            556 8899999999999999999999999999999999999999999988888888888888888777665543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=92.75  E-value=7.9  Score=37.83  Aligned_cols=51  Identities=18%  Similarity=0.068  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhHHHHHhH
Q psy17852        144 SRKKYEADYKDMEQQLEMNNKLKEDALK-----QLKKLQVHELEKAKRLLESQLAE  194 (200)
Q Consensus       144 ~~kklE~el~ele~qLe~a~r~~~~a~k-----~~~~l~~~i~elq~~lee~~~~~  194 (200)
                      ....|+.+...|+.++++.+.....-.+     ....+......++.++++++.+.
T Consensus      1024 kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (1080)
T 2dfs_A         1024 LVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3344444444444444444433222222     33334455567777777777654

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=90.67  E-value=5.7  Score=32.00  Aligned_cols=58  Identities=12%  Similarity=0.142  Sum_probs=26.3

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q psy17852         15 EKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLRE   72 (200)
Q Consensus        15 ~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~   72 (200)
                      .+..+...+..+-.....|+.++..+...+......+..++..++.++..+...+..+
T Consensus        19 ~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri   76 (256)
T 3na7_A           19 EIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKI   76 (256)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333334444444444444444444445555555555555555444433

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=90.28  E-value=0.85  Score=33.66  Aligned_cols=72  Identities=15%  Similarity=0.177  Sum_probs=39.1

Q ss_pred             HHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852         32 KLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEM  107 (200)
Q Consensus        32 ~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~eEe~~e~~rk~l~~el~~~~el~~~kk~lE~el~e  107 (200)
                      .+..++..|...+.+........+..+..++.++.++-+.    -|+..++....+-..++.+++....|+.++.+
T Consensus        43 ~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas----LFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e  114 (135)
T 2e7s_A           43 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS----LFDEANNLVADARMEKYAIEILNKRLTEQLRE  114 (135)
T ss_dssp             THHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH----HHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556666666665555666666666666666666653    33444444444433334555555555554433

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=89.97  E-value=4.9  Score=30.21  Aligned_cols=25  Identities=20%  Similarity=0.214  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852         83 QKAAALASRKKYEADYKDMEQQLEM  107 (200)
Q Consensus        83 ~l~~el~~~~el~~~kk~lE~el~e  107 (200)
                      .+..+-.-+..++..+.+++.++++
T Consensus        66 ~l~~E~~~R~~aE~~~~~ie~ElEe   90 (154)
T 2ocy_A           66 DIAKENELRTKAEEEADKLNKEVED   90 (154)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334446777888888888887

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=88.48  E-value=4  Score=27.10  Aligned_cols=73  Identities=15%  Similarity=0.151  Sum_probs=56.3

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH
Q psy17852        122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAE  194 (200)
Q Consensus       122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~  194 (200)
                      .-|..|....|...-....+....+..+.....++..+...++.+..++..+-.++.++.+.+..|+++..++
T Consensus         6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~   78 (81)
T 1ic2_A            6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKA   78 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455666666766666677777777777777777888888888888888888888888888888888877654

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=88.30  E-value=5.7  Score=28.68  Aligned_cols=86  Identities=12%  Similarity=0.222  Sum_probs=48.9

Q ss_pred             HHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHH
Q psy17852         18 ELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV--EAELDDERKQKAAALASRKKYE   95 (200)
Q Consensus        18 e~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e--Ee~~e~~rk~l~~el~~~~el~   95 (200)
                      .....+.++.+.-..|+.+++.+.+.....+..+.+.+.   .++..+..++..+.  +.++...+..+...+..-..|.
T Consensus        33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll  109 (129)
T 3tnu_B           33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ---RGELALKDARNKLAELEEALQKAKQDMARLLREYQELM  109 (129)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            334445666666677777777777776666666665542   44555555555443  2344444444444444445666


Q ss_pred             HHHHHHHHHHH
Q psy17852         96 ADYKDMEQQLE  106 (200)
Q Consensus        96 ~~kk~lE~el~  106 (200)
                      ..|-.|+.+|.
T Consensus       110 nvKl~Ld~EIa  120 (129)
T 3tnu_B          110 NTKLALDVEIA  120 (129)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666776664

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=88.00  E-value=6  Score=28.64  Aligned_cols=85  Identities=14%  Similarity=0.058  Sum_probs=44.2

Q ss_pred             HHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHH
Q psy17852         19 LQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV--EAELDDERKQKAAALASRKKYEA   96 (200)
Q Consensus        19 ~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e--Ee~~e~~rk~l~~el~~~~el~~   96 (200)
                      ....+.++.+.-..|+.+++.+.+.....+..+.+.+.   .++..+..++..+.  +.++...+..+...+..-..|..
T Consensus        36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~  112 (131)
T 3tnu_A           36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG---RYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD  112 (131)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445566666666777777666666666665555442   34445555544443  23444444444444444455666


Q ss_pred             HHHHHHHHHH
Q psy17852         97 DYKDMEQQLE  106 (200)
Q Consensus        97 ~kk~lE~el~  106 (200)
                      .|-.|+.+|.
T Consensus       113 vKl~Ld~EIa  122 (131)
T 3tnu_A          113 VKTRLEQEIA  122 (131)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666654

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=87.08  E-value=10  Score=30.40  Aligned_cols=58  Identities=17%  Similarity=0.222  Sum_probs=40.1

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852         16 KEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV   73 (200)
Q Consensus        16 lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e   73 (200)
                      |..+-..+..+......|..++.++...+......+..+......++..+..+...+.
T Consensus        13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~   70 (256)
T 3na7_A           13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ   70 (256)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566777777777777788777777777777777776666666666666555554

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=86.85  E-value=9.4  Score=29.64  Aligned_cols=67  Identities=13%  Similarity=0.138  Sum_probs=38.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q psy17852          4 KQKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEKLREV   73 (200)
Q Consensus         4 ~L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k~~~e   73 (200)
                      .|..........+.++..-+....-.-+.|+.+++   .+|+.+......|..+...+..++..|+.++.
T Consensus        14 ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE---~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~   80 (189)
T 2v71_A           14 YWKELSMKYKQSFQEARDELVEFQEGSRELEAELE---AQLVQAEQRNRDLQADNQRLKYEVEALKEKLE   80 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555555555555555555555555543   45555566666666666666666666666655

>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}

Probab=86.55  E-value=3.5  Score=28.61  Aligned_cols=67  Identities=27%  Similarity=0.261  Sum_probs=48.3

Q ss_pred             HhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852        116 LKQLKKLQLREVEAELDDERKQKAAALASRKKYE-----ADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEK  183 (200)
Q Consensus       116 ~r~l~~~qi~elq~~Leee~r~r~e~~~~~kklE-----~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~el  183 (200)
                      .++++ ..|.+|+..++.+.+++..+.+-+.-+.     ++-..++.+|.++...+..+.-.+.+++.-+.++
T Consensus        17 kkkL~-~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~   88 (98)
T 2ke4_A           17 RKRLQ-QQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA   88 (98)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45777 8899999999999999999988876544     3444456677766666666666666665555554

>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1

Probab=83.42  E-value=8.5  Score=26.18  Aligned_cols=66  Identities=20%  Similarity=0.271  Sum_probs=49.7

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH
Q psy17852        122 LQLREVEAELDDERKQKAAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLAE  194 (200)
Q Consensus       122 ~qi~elq~~Leee~r~r~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~~  194 (200)
                      ..+-.|+..|+.+.-++..+.++++.+++-++.++.+-+.-+       +.++.+++.+.+.-.-++.+.-+|
T Consensus         4 n~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~-------~~i~el~akidd~Lk~l~~EklAk   69 (101)
T 1d7m_A            4 NRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAERE-------KRLRELEAKLDETLKNLELEKLAR   69 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHcccHHHHHH
Confidence            567889999999999999999999999888887777655433       345566666666666666665554

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=82.41  E-value=10  Score=26.26  Aligned_cols=43  Identities=9%  Similarity=-0.024  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852        143 ASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAK  185 (200)
Q Consensus       143 ~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~  185 (200)
                      +....++.++..++..|..+........+......+.+..|..
T Consensus        51 kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~R   93 (101)
T 3u1c_A           51 KQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNR   93 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334455555555555555555555555555555555544443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=81.14  E-value=29  Score=30.73  Aligned_cols=55  Identities=9%  Similarity=0.046  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q psy17852        139 AAALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLESQLA  193 (200)
Q Consensus       139 ~e~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~~~~  193 (200)
                      .+....+..++.++..++..++.......++.++...+..+++.+...+++-=.+
T Consensus       533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~  587 (597)
T 3oja_B          533 DAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDT  587 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred             hhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            3334445666677777778787777777778888888888888887776654333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=80.55  E-value=16  Score=27.40  Aligned_cols=44  Identities=23%  Similarity=0.252  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy17852        147 KYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAKRLLES  190 (200)
Q Consensus       147 klE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~~lee~  190 (200)
                      .++..|..|...|..|......|.+.+.+|+..|.+|...|...
T Consensus        74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~  117 (155)
T 2efr_A           74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ  117 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677777777777777777777777777777777777666543

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=80.52  E-value=12  Score=25.81  Aligned_cols=45  Identities=11%  Similarity=0.065  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17852        141 ALASRKKYEADYKDMEQQLEMNNKLKEDALKQLKKLQVHELEKAK  185 (200)
Q Consensus       141 ~~~~~kklE~el~ele~qLe~a~r~~~~a~k~~~~l~~~i~elq~  185 (200)
                      +.+..+.++.++..++..|..++.....+.+......+.+..|..
T Consensus        49 L~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnR   93 (101)
T 3u59_A           49 LQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNR   93 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334455555555555555555545555444444444444443

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=80.12  E-value=10  Score=24.96  Aligned_cols=65  Identities=17%  Similarity=0.246  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy17852          5 QKKENEVLEREKEELQALNDKLEKSKKKLQSELDDITIDLETQRAKVVDLEKKQRNFDKVLAEEK   69 (200)
Q Consensus         5 L~~~l~~l~~~lee~~~~~~~ler~kk~L~~El~dl~~~le~~~~~~~~lek~~r~~e~el~e~k   69 (200)
                      +..++..|-.+..++-.....|.-.+..|-..+++|+...+-....+..+...+-+++.-+.++.
T Consensus         7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elE   71 (77)
T 2w83_C            7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE   71 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777888888888888889999999999999888888888777777767765555443

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00