Psyllid ID: psy17863
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 341 | 2.2.26 [Sep-21-2011] | |||||||
| Q9DAJ4 | 315 | WD repeat domain-containi | yes | N/A | 0.841 | 0.911 | 0.414 | 1e-71 | |
| Q9BRX9 | 315 | WD repeat domain-containi | yes | N/A | 0.821 | 0.888 | 0.413 | 2e-71 | |
| Q5BLX8 | 315 | WD repeat domain-containi | yes | N/A | 0.841 | 0.911 | 0.414 | 7e-71 | |
| Q6DH44 | 315 | WD repeat domain-containi | yes | N/A | 0.824 | 0.892 | 0.418 | 3e-69 | |
| Q5XGI5 | 314 | WD repeat domain-containi | yes | N/A | 0.824 | 0.894 | 0.414 | 1e-64 | |
| Q3KQ62 | 314 | WD repeat domain-containi | N/A | N/A | 0.824 | 0.894 | 0.423 | 7e-62 | |
| Q9C1X0 | 297 | Uncharacterized WD repeat | yes | N/A | 0.765 | 0.878 | 0.297 | 2e-36 | |
| Q54H44 | 325 | WD repeat domain-containi | yes | N/A | 0.926 | 0.972 | 0.278 | 8e-32 | |
| Q9V3J8 | 361 | Protein will die slowly O | no | N/A | 0.841 | 0.795 | 0.270 | 1e-26 | |
| Q4V8C4 | 328 | WD repeat-containing prot | no | N/A | 0.838 | 0.871 | 0.264 | 1e-25 |
| >sp|Q9DAJ4|WDR83_MOUSE WD repeat domain-containing protein 83 OS=Mus musculus GN=Wdr83 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 270 bits (690), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 140/338 (41%), Positives = 195/338 (57%), Gaps = 51/338 (15%)
Query: 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 65
++T+DC QGA+RAVRFNVDG+YCLTCGSDK +KLWNP R LL+TY GH +EV DA +
Sbjct: 18 MKTLDCSQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSF 77
Query: 66 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
D+S + SG DK+V+LW+V TGQ VR++R HA KV V+FNE+++V++SGS D++V WD
Sbjct: 78 DNSHLCSGGGDKTVVLWDVATGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWD 137
Query: 126 VKSRSHHPIQCCLDSKDS---------QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV 176
+SR P+Q +++D +I GS DG++ ++ L
Sbjct: 138 CRSRKPEPVQTLDEARDGISSVKVSDHEILAGSVDGRVRRYDL----------------- 180
Query: 177 VNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFD 236
++ DY PI CF+RD QC L S D LRL D
Sbjct: 181 ---------------------RMGQVSSDYVGSPITCTCFSRDGQCTLISSLDSTLRLLD 219
Query: 237 KATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK 296
K TGELL EY GHK+ ++++CCL +D+ + S DGK++ W LV+ + L VG
Sbjct: 220 KDTGELLGEYVGHKNQQYKLDCCLSERDTHVVSCSEDGKVFFWDLVEGAL--ALALPVGS 277
Query: 297 AVVNSLCSHPTRKHIMSACGNNVKLWTAE--EDYGQAG 332
VV SL HPT +++A G +++ W E E G AG
Sbjct: 278 NVVQSLAYHPTEPCLLTAMGGSIQYWREETYEAEGGAG 315
|
Molecular scaffold protein for various multimeric protein complexes. Involved in response to hypoxia by acting as a negative regulator of HIF1A/HIF-1-alpha via its interaction with EGLN3/PHD3. May promote degradation of HIF1A. May act by recruiting signaling complexes to a specific upstream activator (By similarity). Also acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. At low concentrations it enhances ERK activation, whereas high concentrations lead to the inhibition of ERK activation. May also be involved in pre-mRNA splicing. Mus musculus (taxid: 10090) |
| >sp|Q9BRX9|WDR83_HUMAN WD repeat domain-containing protein 83 OS=Homo sapiens GN=WDR83 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 269 bits (687), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 136/329 (41%), Positives = 193/329 (58%), Gaps = 49/329 (14%)
Query: 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 65
++T+DC QGA+RAVRFNVDG+YCLTCGSDK +KLWNP R LL+TY GH +EV DA +
Sbjct: 18 LKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSF 77
Query: 66 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
D+S + SG DK+V+LW+V +GQ VR++R HA KV V+FNE+++V++SGS D+++ WD
Sbjct: 78 DNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSIRCWD 137
Query: 126 VKSRSHHPIQCCLDSKDS---------QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV 176
+SR P+Q +++D +I GS DG++ ++ L
Sbjct: 138 CRSRRPEPVQTLDEARDGVSSVKVSDHEILAGSVDGRVRRYDL----------------- 180
Query: 177 VNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFD 236
++ DY PI CF+RD QC L S D LRL D
Sbjct: 181 ---------------------RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLD 219
Query: 237 KATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK 296
K TGELL EYKGHK+ +++++CCL +D+ + S DGK++ W LV+ + L VG
Sbjct: 220 KDTGELLGEYKGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDLVEGAL--ALALPVGS 277
Query: 297 AVVNSLCSHPTRKHIMSACGNNVKLWTAE 325
VV SL HPT +++A G +V+ W E
Sbjct: 278 GVVQSLAYHPTEPCLLTAMGGSVQCWREE 306
|
Molecular scaffold protein for various multimeric protein complexes. Acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. At low concentrations it enhances ERK activation, whereas high concentrations lead to the inhibition of ERK activation. Also involved in response to hypoxia by acting as a negative regulator of HIF1A/HIF-1-alpha via its interaction with EGLN3/PHD3. May promote degradation of HIF1A. May act by recruiting signaling complexes to a specific upstream activator (By similarity). May also be involved in pre-mRNA splicing. Homo sapiens (taxid: 9606) |
| >sp|Q5BLX8|WDR83_RAT WD repeat domain-containing protein 83 OS=Rattus norvegicus GN=Wdr83 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (683), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 140/338 (41%), Positives = 194/338 (57%), Gaps = 51/338 (15%)
Query: 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 65
++T+DC QGA+RAVRFNVDG+YCLTCGSDK +KLWNP R LL+TY GH +EV DA +
Sbjct: 18 LKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSF 77
Query: 66 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
D+S + SG DK+V+LW+V TGQ VR++R HA KV V+FNE+++V++SGS D++V WD
Sbjct: 78 DNSHLCSGGGDKTVVLWDVATGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWD 137
Query: 126 VKSRSHHPIQCCLDSKDS---------QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV 176
+SR P+Q +++D +I GS DG++ ++ L
Sbjct: 138 CRSRKPEPVQTLDEARDGISSVKVSDHEILAGSVDGRVRRYDL----------------- 180
Query: 177 VNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFD 236
++ DY PI CF+RD QC L S D LRL D
Sbjct: 181 ---------------------RMGQVTSDYVGSPITCTCFSRDGQCTLISSLDSTLRLLD 219
Query: 237 KATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK 296
K TGELL EY GHK+ ++++CCL +D+ + S DGK++ W LV+ S L VG
Sbjct: 220 KDTGELLGEYVGHKNQKYKLDCCLSERDTHVVSCSEDGKVFFWDLVEGSL--ALALPVGS 277
Query: 297 AVVNSLCSHPTRKHIMSACGNNVKLWTAE--EDYGQAG 332
VV SL HP +++A G +++ W E E G AG
Sbjct: 278 NVVQSLAYHPADPCLLTAMGGSIQYWREETYEAEGGAG 315
|
Molecular scaffold protein for various multimeric protein complexes. Acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. At low concentrations it enhances ERK activation, whereas high concentrations lead to the inhibition of ERK activation (By similarity). Also involved in response to hypoxia by acting as a negative regulator of HIF1A/HIF-1-alpha via its interaction with EGLN3/PHD3. May promote degradation of HIF1A. May act by recruiting signaling complexes to a specific upstream activator. May also be involved in pre-mRNA splicing. Rattus norvegicus (taxid: 10116) |
| >sp|Q6DH44|WDR83_DANRE WD repeat domain-containing protein 83 OS=Danio rerio GN=wdr83 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 262 bits (670), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 138/330 (41%), Positives = 193/330 (58%), Gaps = 49/330 (14%)
Query: 7 QTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD 66
+T+DC+QGA+RAVRFN DG+Y LTCGSDK +KLW+ R LLKTY GH +EV DA + D
Sbjct: 19 RTVDCQQGAVRAVRFNADGNYLLTCGSDKSLKLWSVSRGTLLKTYSGHGYEVLDADGSYD 78
Query: 67 SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126
+SQ+ S +SDK+VILW+V +GQ R+ R HA KV CV+FNE+++V++SGS D TV WD
Sbjct: 79 NSQLCSCSSDKTVILWDVASGQVTRKLRGHAGKVNCVQFNEEATVMLSGSIDGTVRCWDT 138
Query: 127 KSRSHHPIQCCLDSKDS---------QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVV 177
+SR PIQ +S+D ++ GS DG++ ++ L
Sbjct: 139 RSRRMEPIQILDESQDGISSLKVSEHELLTGSVDGRVRRYDL------------------ 180
Query: 178 NSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDK 237
++ + DY PI CF+RD QC L+ S D +RL DK
Sbjct: 181 --------------------RMGQLQVDYIGSPITCVCFSRDGQCTLSSSLDSTVRLLDK 220
Query: 238 ATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA 297
+TGE+L EY GH + ++++CCL KD+ + S DG +Y W LV+ S TL VGKA
Sbjct: 221 STGEMLGEYSGHVNKGYKLDCCLTDKDTHVLSCSEDGHVYYWDLVEGSL--TLKLPVGKA 278
Query: 298 VVNSLCSHPTRKHIMSACGNNVKLWTAEED 327
VV SL HPT ++++ V++W AE +
Sbjct: 279 VVQSLSFHPTEPRLLTSMEGRVQVWGAEPE 308
|
Molecular scaffold protein for various multimeric protein complexes. Acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. Also involved in response to hypoxia by acting as a negative regulator of HIF1A/HIF-1-alpha. Danio rerio (taxid: 7955) |
| >sp|Q5XGI5|WDR83_XENTR WD repeat domain-containing protein 83 OS=Xenopus tropicalis GN=wdr83 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (629), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/333 (41%), Positives = 191/333 (57%), Gaps = 52/333 (15%)
Query: 9 IDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
++C QGA+RAVRFNVDG+YC+TCGSDK +KLWNP++ LLKTY GH +EV D + D+S
Sbjct: 21 LECNQGAVRAVRFNVDGNYCMTCGSDKTLKLWNPHKGTLLKTYSGHGYEVLDTAGSYDNS 80
Query: 69 QIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 128
Q+ S +SDK+VILW+V GQ VR++R HA KV CV+FNE+++V++SGS D+++ WD +S
Sbjct: 81 QMCSCSSDKTVILWDVAQGQVVRKFRGHAGKVNCVQFNEEATVIMSGSIDSSIRCWDCRS 140
Query: 129 RSHHPIQCCLDSKDS---------QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNS 179
R IQ ++KD +I GS DG + ++ L
Sbjct: 141 RRPEAIQILDEAKDGISSIKISDHEILAGSVDGNLRRYDL-------------------- 180
Query: 180 LCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKAT 239
RK M A DY PI F++D QC+L S D LRL DK T
Sbjct: 181 ------RKGEMCA------------DYLGSPITCVSFSQDSQCLLASSLDSTLRLLDKDT 222
Query: 240 GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVV 299
GELL EY GH++ ++++ CL KD+ + S DG + W LV+ S + L VGKA V
Sbjct: 223 GELLGEYTGHQNHSYKLDSCLSEKDTHVLSCSEDGTVCFWDLVEGSLVLKL--PVGKAAV 280
Query: 300 NSLCSHPTRKHIMSACGNNVKLWTA---EEDYG 329
SL HP+ +++A V+LW EE+ G
Sbjct: 281 QSLSFHPSECCLLTASEGGVQLWRGASYEEEGG 313
|
Molecular scaffold protein for various multimeric protein complexes. Acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. Also involved in response to hypoxia by acting as a negative regulator of HIF1A/HIF-1-alpha. Xenopus tropicalis (taxid: 8364) |
| >sp|Q3KQ62|WDR83_XENLA WD repeat domain-containing protein 83 OS=Xenopus laevis GN=wdr83 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (606), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 141/333 (42%), Positives = 193/333 (57%), Gaps = 52/333 (15%)
Query: 9 IDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS 68
++C QGA+RAVRFNVDG+YC+TCGSDK +KLWNP++ LLKTY GH +EV D +CD+S
Sbjct: 21 LECNQGAVRAVRFNVDGNYCMTCGSDKSLKLWNPHKGSLLKTYSGHGYEVLDTAGSCDNS 80
Query: 69 QIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 128
Q+ S +SDK+VILW+V GQ VR++R HA KV CV+FNE+++V+ISGS D+++ WD +S
Sbjct: 81 QLCSCSSDKTVILWDVAQGQVVRKFRGHAGKVNCVQFNEEATVIISGSIDSSIRCWDCRS 140
Query: 129 RSHHPIQCCLDSKDS---------QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNS 179
R IQ ++KD +I GS DG + ++ L
Sbjct: 141 RRPDAIQIMDEAKDGISSVKVSAHEILAGSVDGNLRRYDL-------------------- 180
Query: 180 LCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKAT 239
RK M A DY PI F++D QC+L S D LRL DK T
Sbjct: 181 ------RKGEMCA------------DYLGSPITCVSFSQDSQCLLASSLDSTLRLLDKDT 222
Query: 240 GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVV 299
GELL EY GH++ ++++ CL KD+ + S DG + W LV+ S + L VGKAVV
Sbjct: 223 GELLGEYTGHQNLSYKLDSCLSEKDTHVLSCSEDGTVCFWDLVEGSLVLKL--PVGKAVV 280
Query: 300 NSLCSHPTRKHIMSACGNNVKLWTA---EEDYG 329
SL HPT +++A V++W EE+ G
Sbjct: 281 QSLSFHPTECCLLTASEGGVQVWRGASYEEEGG 313
|
Molecular scaffold protein for various multimeric protein complexes. Acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. Also involved in response to hypoxia by acting as a negative regulator of HIF1A/HIF-1-alpha. Xenopus laevis (taxid: 8355) |
| >sp|Q9C1X0|YN55_SCHPO Uncharacterized WD repeat-containing protein C713.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC713.05 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/309 (29%), Positives = 149/309 (48%), Gaps = 48/309 (15%)
Query: 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS 75
I V++N G Y L G+++ ++LWN + Y GH HE+ D DS++ AS
Sbjct: 17 INVVKYNRTGKYVLAAGNERVVRLWNVKSGACIHEYAGHGHEILDLDLVYDSTKFASCGG 76
Query: 76 DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ 135
DK + +W+V TG+ RR H +++ +++NEDSS++ SGS D+ V +WD +S S PIQ
Sbjct: 77 DKFIQVWDVNTGKVDRRLGGHLAQINTIRYNEDSSILASGSFDSKVRLWDCRSNSFSPIQ 136
Query: 136 CCLDSKDS---------QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR 186
D+KDS I GS+DG +L ++ R
Sbjct: 137 VLADAKDSVSSIDIAEHLIVTGSTDG--------------------------TLRTYDIR 170
Query: 187 KHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY 246
K +S+ DY PI ++ L S + + L D+ TG++L+ Y
Sbjct: 171 KGTLSS------------DYFSHPITSVKTSKSASFSLISSLNSSIHLLDQETGKILKSY 218
Query: 247 KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 306
G K+ ++R+ + ++ +F GS DGK+Y W L + +QI++ VG +V + HP
Sbjct: 219 IGLKNMEYRVRSSFNQSETIVFSGSEDGKVYLWDLENETQITS-TSVVGTPIVTDISCHP 277
Query: 307 TRKHIMSAC 315
T + A
Sbjct: 278 TMDDFIIAT 286
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q54H44|WDR83_DICDI WD repeat domain-containing protein 83 homolog OS=Dictyostelium discoideum GN=morg1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 138 bits (347), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 93/334 (27%), Positives = 168/334 (50%), Gaps = 18/334 (5%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
++ +C + + G++ V++N DG YCL+ SDK IKL+N + ++ ++ H + + D
Sbjct: 2 VKISCNKVLSNHSGSVTVVKYNSDGGYCLSGSSDKSIKLYNVSKGSMIHSFEEHGYGIGD 61
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE-HASKVTCVKFNEDSSVVISGSQDN 119
+ D+ Q+ S A +K + W++ +GQ +RR++ H +T V N DS+++ SGS D
Sbjct: 62 LVSTSDNKQLFSCA-EKQLYQWDIASGQVIRRFQNAHNDTITSVCVNLDSTLLFSGSSDR 120
Query: 120 TVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNS 179
V WD++++S +P+Q D+KD+ I Q + + HS G N
Sbjct: 121 LVKAWDLRTKSINPVQILDDAKDTIT------SIIVNEQTITHNHSHGHGHSHGNNNNNQ 174
Query: 180 LCSHPTRKHIMSACGN-----NVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRL 234
+H ++ I S+ +V++ T PI T+D +C + TDE ++L
Sbjct: 175 PHTHTQKEVITSSVDGCIRTYDVRMGTLVTYEDTIPISSVSITKDKKCFIASCTDETVKL 234
Query: 235 FDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ-LVDSSQISTLIHS 293
D + E L+EYKGHK+ ++I C + DS I GS D Y ++ L HS
Sbjct: 235 IDIDSYETLKEYKGHKNKVYKINSCSNFDDSLIISGSEDNDFYIYELLSGKLLSKLSGHS 294
Query: 294 VGKAVVNSLCSHPTRKHIMSACGN-NVKLWTAEE 326
++ + SHP++ +++ + +++W E
Sbjct: 295 ---NIITHVDSHPSKNQFITSSTDCTIRIWDQSE 325
|
Molecular scaffold protein for various multimeric protein complexes. Acts as a module in the assembly of a multicomponent scaffold for the ERK pathway, linking ERK responses to specific agonists. Also involved in response to hypoxia. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9V3J8|WDS_DROME Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 150/337 (44%), Gaps = 50/337 (14%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
YT T+ A+ AV+F+ +G + + +DK IK+W Y KT GH ++D
Sbjct: 61 NYTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 120
Query: 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121
+ DS + SG+ DK++ +WE++TG+ ++ + H++ V C FN S++++SGS D +V
Sbjct: 121 AWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 180
Query: 122 MMWDV------KSRSHH--PIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSV 172
+WDV K+ H P+ ++D + SS DG W + TLI
Sbjct: 181 RIWDVRTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI--- 237
Query: 173 GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232
D P+ F+ + + IL + D L
Sbjct: 238 --------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTL 265
Query: 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLI 291
+L+D + G+ L+ Y GHK+ + I + I GS D +Y W L S ++ +
Sbjct: 266 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL-QSKEVVQKL 324
Query: 292 HSVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 325
V+ + C HPT I SA N +KLW ++
Sbjct: 325 QGHTDTVLCTAC-HPTENIIASAALENDKTIKLWKSD 360
|
Essential for viability. Drosophila melanogaster (taxid: 7227) |
| >sp|Q4V8C4|WDR5B_RAT WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 147/336 (43%), Gaps = 50/336 (14%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT 62
Y T+ AI +V+F+ +G + + +D I +W Y KT GH+ E++D
Sbjct: 29 YALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGKCKKTLYGHSLEISDVA 88
Query: 63 AACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVM 122
+ DSS++ S + DK++ LW+V +G+ ++ + H+ V C FN S++++SGS D +V
Sbjct: 89 WSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVK 148
Query: 123 MWDVK--------SRSHHPIQCC-LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG 173
+W+VK S PI S I GS DG W + TL
Sbjct: 149 IWEVKTGKCLKTLSAHSDPISAVHFHCNGSLIVSGSYDGLCRIWDAASGQCLRTL----- 203
Query: 174 KAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLR 233
D G P+ F+ + + ILT + D L+
Sbjct: 204 ------------------------------ADEGNPPVSFVKFSPNGKYILTATLDSTLK 233
Query: 234 LFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLIH 292
L+D + G L+ Y GHK+ + I + + GS D +Y W L + +I +
Sbjct: 234 LWDYSRGRCLKTYTGHKNEKYCIFASFSVTGRKWVVSGSEDNMVYIWNL-QTKEIVQRLQ 292
Query: 293 SVGKAVVNSLCSHPTRKHIMSACGNN---VKLWTAE 325
V+++ C HPT I SA N +K+W+++
Sbjct: 293 GHTDVVISAAC-HPTENIIASAALENDKTIKIWSSD 327
|
May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 341 | ||||||
| 189237943 | 307 | PREDICTED: similar to wd-repeat protein | 0.829 | 0.921 | 0.465 | 5e-78 | |
| 260795321 | 305 | hypothetical protein BRAFLDRAFT_124121 [ | 0.826 | 0.924 | 0.457 | 4e-74 | |
| 380011545 | 300 | PREDICTED: WD repeat domain-containing p | 0.835 | 0.95 | 0.423 | 6e-72 | |
| 242015538 | 297 | mitogen-activated protein kinase organiz | 0.853 | 0.979 | 0.456 | 8e-72 | |
| 157129471 | 307 | wd-repeat protein [Aedes aegypti] gi|108 | 0.879 | 0.977 | 0.466 | 1e-70 | |
| 332372987 | 306 | unknown [Dendroctonus ponderosae] | 0.829 | 0.924 | 0.453 | 1e-70 | |
| 119604689 | 344 | mitogen-activated protein kinase organiz | 0.920 | 0.912 | 0.425 | 3e-70 | |
| 350409368 | 303 | PREDICTED: WD repeat domain-containing p | 0.832 | 0.937 | 0.433 | 3e-70 | |
| 157110954 | 307 | wd-repeat protein [Aedes aegypti] gi|108 | 0.856 | 0.951 | 0.475 | 3e-70 | |
| 301771201 | 315 | PREDICTED: WD repeat domain-containing p | 0.847 | 0.917 | 0.415 | 4e-70 |
| >gi|189237943|ref|XP_001811459.1| PREDICTED: similar to wd-repeat protein [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 154/331 (46%), Positives = 202/331 (61%), Gaps = 48/331 (14%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
M+ C+ TIDC+QGA+RAVRFNVDGSYCLTCGSDKK+KLWNPYR+LLLKTYGGH +EV D
Sbjct: 1 MDLQCLNTIDCQQGAVRAVRFNVDGSYCLTCGSDKKLKLWNPYRSLLLKTYGGHGNEVLD 60
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120
A +CDSSQIAS +SDKSVI+W+V+TGQP+RR+R HA+ VTCVKFNE+SSV ISGS DNT
Sbjct: 61 ACGSCDSSQIASCSSDKSVIIWDVSTGQPLRRFRGHAATVTCVKFNEESSVAISGSLDNT 120
Query: 121 VMMWDVKSRSHHPIQCCLDSK---------DSQIFCGSSDGKIYKWQLVDSSQISTLIHS 171
+M WDVKSR+ +PIQ D+K D +I GS D + ++ L + S
Sbjct: 121 IMCWDVKSRNTNPIQTLKDAKDCITSIQVTDHEILAGSVDCSVRRYDLRNGS-------- 172
Query: 172 VGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDEC 231
D+ I F+ D QC+L S D
Sbjct: 173 ------------------------------CHADFVGAAITSVSFSHDGQCVLVSSADST 202
Query: 232 LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291
+RL DK TGE+L EY GH++ D IE + + D+ + GS G+++ W LV + +
Sbjct: 203 IRLLDKNTGEMLGEYVGHRTDDMNIESAIITSDNHVLSGSVTGELFCWDLVSGAVVQKYT 262
Query: 292 HSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 322
H+ K V+NSL HPT +++A +K+W
Sbjct: 263 HTARK-VLNSLSVHPTEDTVLTASVQTIKIW 292
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|260795321|ref|XP_002592654.1| hypothetical protein BRAFLDRAFT_124121 [Branchiostoma floridae] gi|229277876|gb|EEN48665.1| hypothetical protein BRAFLDRAFT_124121 [Branchiostoma floridae] | Back alignment and taxonomy information |
|---|
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 152/332 (45%), Positives = 204/332 (61%), Gaps = 50/332 (15%)
Query: 7 QTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD 66
+T++CKQGA+RAVRFN DG+YCLTCGSDK IKLWNP++ + TY GH +EV D A+CD
Sbjct: 11 RTLECKQGAVRAVRFNDDGNYCLTCGSDKSIKLWNPHKGTHIMTYTGHGYEVLDVAASCD 70
Query: 67 SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126
+SQ+ S +DK VILW+V+TG+ VRR+R H +V CVKFNE+S+V+ SGS DNTV +WD
Sbjct: 71 NSQLTSTGADKMVILWDVSTGKMVRRFRGHVGRVNCVKFNEESTVIASGSIDNTVRLWDC 130
Query: 127 KSRSHH-PIQCCLDSKDS---------QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV 176
+++S + PIQ ++KD +I GS DG++ ++ L VG+ +
Sbjct: 131 RAKSKYDPIQILDEAKDGIFSIKLSDHEILTGSVDGRVRRYDL-----------RVGELL 179
Query: 177 VNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFD 236
V DY P+ CFT+D QC+L+ + D LRL D
Sbjct: 180 V---------------------------DYIGSPVTCVCFTKDGQCVLSSALDSTLRLLD 212
Query: 237 KATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK 296
K TGELL EY GHKS +F+ +CCL + D+ + GS DGKIY W LVD + TL GK
Sbjct: 213 KDTGELLGEYTGHKSTEFKTDCCLTNSDAHVVSGSEDGKIYFWDLVDGKVVHTL-SKAGK 271
Query: 297 AVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 328
VV+SL HP+ ++SA N VK+W EEDY
Sbjct: 272 GVVHSLSYHPSLPCMLSAAENLVKVW-REEDY 302
|
Source: Branchiostoma floridae Species: Branchiostoma floridae Genus: Branchiostoma Family: Branchiostomidae Order: Class: Phylum: Chordata Superkingdom: Eukaryota |
| >gi|380011545|ref|XP_003689862.1| PREDICTED: WD repeat domain-containing protein 83-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 141/333 (42%), Positives = 203/333 (60%), Gaps = 48/333 (14%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
++Y ++ IDCKQGA+RAVRF+VDG+YCLTCGSD+K+KLWNPYR ++LKTY GH +EV D
Sbjct: 3 IDYKLLKEIDCKQGAVRAVRFSVDGAYCLTCGSDRKLKLWNPYRGVILKTYEGHGNEVMD 62
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120
++A+CDSSQI S DKSVILW+V +G P+RR R HA V V+FNE+SS+VISGS+DN
Sbjct: 63 SSASCDSSQIVSCGLDKSVILWDVASGTPIRRLRGHAGPVNTVRFNEESSMVISGSRDNL 122
Query: 121 VMMWDVKSRSHHPIQCCLDSKDS---------QIFCGSSDGKIYKWQLVDSSQISTLIHS 171
VM+WDV+S+ P+QC ++KDS +I S DGKI ++
Sbjct: 123 VMLWDVRSKMLEPVQCLNEAKDSISSVRISNHEILTASFDGKIRRY-------------- 168
Query: 172 VGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDEC 231
++++ DY + ++ A FTRD QCI+ S D
Sbjct: 169 ------------------------DIRVGEIYADYIGDAVICASFTRDGQCIVVSSADGV 204
Query: 232 LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291
+RL DK +GELL E+ GH + +E +D++D++I GS+DGK++ W LV ++ L
Sbjct: 205 IRLIDKDSGELLGEFTGHVVNNLCLESNVDNQDTRIISGSADGKLWIWDLVSQKVVAKLS 264
Query: 292 -HSVGKAVVNSLCSHPTRKHIMSACGNNVKLWT 323
K + SL HP + + ++ G+N+ +WT
Sbjct: 265 GFKPTKHPMVSLSVHPQKNYFLATNGSNILMWT 297
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242015538|ref|XP_002428410.1| mitogen-activated protein kinase organizer, putative [Pediculus humanus corporis] gi|212513022|gb|EEB15672.1| mitogen-activated protein kinase organizer, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 276 bits (707), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 147/322 (45%), Positives = 203/322 (63%), Gaps = 31/322 (9%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
M+ C++ + C QGAIRAVRFNVDG YCLTCGSDKKIKLWNPY++LLLKTYGGHA +V D
Sbjct: 1 MDLVCLKKLSCNQGAIRAVRFNVDGCYCLTCGSDKKIKLWNPYKSLLLKTYGGHASDVTD 60
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120
A +CD+SQI S DK+VILW+V++GQ ++R+ HA KVTC+KFNE+SSV ISGSQDNT
Sbjct: 61 ACGSCDNSQIISCGFDKTVILWDVSSGQILKRFHGHAGKVTCIKFNEESSVAISGSQDNT 120
Query: 121 VMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 180
V+ WDVK + + PIQ D++D C SS I G ++ S
Sbjct: 121 VIFWDVKGKKNDPIQVLKDAED----CISS------------------IQVNGHEILVSS 158
Query: 181 CSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240
R + ++++ D+ + + A FTRD QC+L S++ LRLFDK G
Sbjct: 159 LDCWVRLY-------DIRMGKYFADFIGDSVTYATFTRDSQCLLL-SSENVLRLFDKENG 210
Query: 241 ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN 300
E+L EY GH S D+ IECC+ KD+ + GS++ ++ W+L+ S H + +V+
Sbjct: 211 EILSEYSGHNSKDYLIECCVSLKDNYVLSGSANKNLWCWELLSSKCFKLFPHE-NENIVH 269
Query: 301 SLCSHPTRKHIMSACGNNVKLW 322
S+ HPT++ +A G+N+ LW
Sbjct: 270 SISPHPTKELYATAAGSNIYLW 291
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157129471|ref|XP_001661691.1| wd-repeat protein [Aedes aegypti] gi|108872188|gb|EAT36413.1| AAEL011493-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 154/330 (46%), Positives = 195/330 (59%), Gaps = 30/330 (9%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
ME I+C QGA+RAVR+NVDGSYCLTCGSDKKIKLWNP LLLKTYGGHA EV D
Sbjct: 1 MELVRKSIIECNQGAVRAVRYNVDGSYCLTCGSDKKIKLWNPRSGLLLKTYGGHAGEVMD 60
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120
A +CDS I S ++DKSVI W+VTTG PVRR R HA V CVKFNEDSSV +SGS DNT
Sbjct: 61 AAGSCDSGFIVSVSADKSVIYWDVTTGLPVRRLRGHAGTVKCVKFNEDSSVAVSGSTDNT 120
Query: 121 VMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 180
VM WDV++R PIQ ++KD IS+L+ + K + SL
Sbjct: 121 VMCWDVRTRKLEPIQTMREAKDC---------------------ISSLVVTEHKIIAASL 159
Query: 181 CSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240
R++ +++ D PI T D QC+L D +RL D TG
Sbjct: 160 -DGSIRQY-------DLRAGELTCDTVGVPITHVVQTSDGQCLLAACLDSTIRLIDTDTG 211
Query: 241 ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN 300
ELL EY+GH++ D+ IEC + DSQI GS++G W L++SS++ + G VV+
Sbjct: 212 ELLSEYQGHRTEDYHIECAVIKSDSQIISGSAEGCAVVWDLLESSEVRRIRMDSG-GVVH 270
Query: 301 SLCSHPTRKHIMSACGNNVKLWTAEEDYGQ 330
SL HPT IM A +V++W E+ G+
Sbjct: 271 SLAPHPTGSDIMFARRRHVEMWGLPEEDGE 300
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332372987|gb|AEE61635.1| unknown [Dendroctonus ponderosae] | Back alignment and taxonomy information |
|---|
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/331 (45%), Positives = 192/331 (58%), Gaps = 48/331 (14%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
M +C+ TIDC QGA+RAVRFNVDG+YCLTCG+DKKIKLWNPYR+L+LKTYGGHA EV D
Sbjct: 1 MNLSCLSTIDCSQGAVRAVRFNVDGTYCLTCGADKKIKLWNPYRHLMLKTYGGHAGEVLD 60
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120
A+CDSSQI S ++DKSVI+W+V+TGQP++R+R HA+ TC+ NEDS++ ISGS DNT
Sbjct: 61 VCASCDSSQIVSCSADKSVIVWDVSTGQPLKRYRGHAAGATCLALNEDSTIAISGSLDNT 120
Query: 121 VMMWDVKSRSHHPIQCCLDSK---------DSQIFCGSSDGKIYKWQLVDSSQISTLIHS 171
+M WD+++R Q ++K D +I GS DG ++ L
Sbjct: 121 LMCWDLRARGDSACQTLREAKDCISTVRISDVEILSGSVDGCARRYDL------------ 168
Query: 172 VGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDEC 231
N C +ED+ I A FTRD QC+L + D
Sbjct: 169 -----RNGKC---------------------DEDFVGASITSATFTRDGQCLLIGAADNK 202
Query: 232 LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291
LRL DK TGELL EY GHK F IE + + D+ I GS DG ++ W LV
Sbjct: 203 LRLLDKNTGELLLEYTGHKIDSFTIESEVITNDNYILSGSVDGNVWCWDLVSGEVKYKYT 262
Query: 292 HSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 322
H K VV S+ HP + +SA N +KLW
Sbjct: 263 HERNK-VVQSISVHPKKDAFLSASTNTIKLW 292
|
Source: Dendroctonus ponderosae Species: Dendroctonus ponderosae Genus: Dendroctonus Family: Curculionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|119604689|gb|EAW84283.1| mitogen-activated protein kinase organizer 1, isoform CRA_b [Homo sapiens] | Back alignment and taxonomy information |
|---|
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 138/324 (42%), Positives = 197/324 (60%), Gaps = 10/324 (3%)
Query: 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 65
++T+DC QGA+RAVRFNVDG+YCLTCGSDK +KLWNP R LL+TY GH +EV DA +
Sbjct: 18 LKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSF 77
Query: 66 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
D+S + SG DK+V+LW+V +GQ VR++R HA KV V+FNE+++V++SGS D+++ WD
Sbjct: 78 DNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSIRCWD 137
Query: 126 VKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 185
+SR P+Q +++D SD +I L + + + P
Sbjct: 138 CRSRRPEPVQTLDEARDGVSSVKVSDHEI----LAGRAWWCMPVFPSTREAEEGESLEPG 193
Query: 186 RKHIMSACGN----NVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGE 241
R+ S G ++++ DY PI CF+RD QC L S D LRL DK TGE
Sbjct: 194 RQRFRSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGE 253
Query: 242 LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNS 301
LL EYKGHK+ +++++CCL +D+ + S DGK++ W LV+ + L VG VV S
Sbjct: 254 LLGEYKGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDLVEGAL--ALALPVGSGVVQS 311
Query: 302 LCSHPTRKHIMSACGNNVKLWTAE 325
L HPT +++A G +V+ W E
Sbjct: 312 LAYHPTEPCLLTAMGGSVQCWREE 335
|
Source: Homo sapiens Species: Homo sapiens Genus: Homo Family: Hominidae Order: Primates Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|350409368|ref|XP_003488710.1| PREDICTED: WD repeat domain-containing protein 83-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 144/332 (43%), Positives = 202/332 (60%), Gaps = 48/332 (14%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
++Y V+ IDCKQGA+RAVRF+VDG+YCLTCGSD+K+KLWNPYR ++LKTYGGH EV D
Sbjct: 3 IDYKLVKEIDCKQGAVRAVRFSVDGAYCLTCGSDRKLKLWNPYRGVMLKTYGGHGDEVMD 62
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120
++A+CDSSQI S DKSVILW+V TG PVRR R HA V V+FNE+SS+VISGS+DN+
Sbjct: 63 SSASCDSSQIVSCGLDKSVILWDVATGTPVRRLRGHAGPVNTVRFNEESSMVISGSRDNS 122
Query: 121 VMMWDVKSRSHHPIQCCLDSKDS---------QIFCGSSDGKIYKWQLVDSSQISTLIHS 171
VM+WD++S++ P QC ++KDS ++ S DGKI ++ +
Sbjct: 123 VMLWDIRSKTLEPAQCLNEAKDSVSSVRVSDHEVLTASFDGKIRRYDI-----------R 171
Query: 172 VGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDEC 231
VG +L+T DY + + A FTRD QCI+ D
Sbjct: 172 VG------------------------ELYT---DYMGDAVTCASFTRDGQCIVVSCADGV 204
Query: 232 LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291
+RL DK +GELL E+ GH + + +E +D++D++I GS+DGK++ W LV ++ L
Sbjct: 205 VRLMDKDSGELLGEFTGHVANNLCLESSVDTQDTRIISGSADGKLWIWDLVSQKVVARLS 264
Query: 292 -HSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 322
K + SL HP ++ G ++ +W
Sbjct: 265 GFKPTKHPIVSLSVHPQTNCFLATNGPSILMW 296
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157110954|ref|XP_001651326.1| wd-repeat protein [Aedes aegypti] gi|108878573|gb|EAT42798.1| AAEL005708-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/322 (47%), Positives = 192/322 (59%), Gaps = 30/322 (9%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
ME I+C QGA+RAVR+NVDGSYCLTCGSDKKIKLWNP LLLKTYGGHA EV D
Sbjct: 1 MELVRKSIIECNQGAVRAVRYNVDGSYCLTCGSDKKIKLWNPRSGLLLKTYGGHAGEVMD 60
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120
A +CDS I S ++DKSVI W+VTTG PVRR R HA V CVKFNEDSSV +SGS DNT
Sbjct: 61 AAGSCDSGFIVSVSADKSVIYWDVTTGLPVRRLRGHAGTVKCVKFNEDSSVAVSGSTDNT 120
Query: 121 VMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 180
VM WDV++R PIQ ++KD IS+L+ + K + SL
Sbjct: 121 VMCWDVRTRKLEPIQTMREAKDC---------------------ISSLVVTEHKIIAASL 159
Query: 181 CSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240
R++ +++ D PI T D QC+L D +RL D TG
Sbjct: 160 -DGSIRQY-------DLRAGELTCDTVGVPITHVVQTSDGQCLLAACLDSTIRLIDTDTG 211
Query: 241 ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN 300
ELL EY+GH++ D+ IEC + DSQI GS++G W L++SS++ + G VV+
Sbjct: 212 ELLSEYRGHRTEDYHIECAVIKSDSQIISGSAEGCAVIWDLLESSEVRRIRMDPG-GVVH 270
Query: 301 SLCSHPTRKHIMSACGNNVKLW 322
SL HPT +IM A +V+LW
Sbjct: 271 SLAPHPTGSNIMFARRRHVELW 292
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|301771201|ref|XP_002921044.1| PREDICTED: WD repeat domain-containing protein 83-like [Ailuropoda melanoleuca] | Back alignment and taxonomy information |
|---|
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 141/339 (41%), Positives = 196/339 (57%), Gaps = 50/339 (14%)
Query: 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 65
V+T+DC QGA+RAVRFNVDG+YCLTCGSDK +KLWNP R LL+TY GH +EV DA +
Sbjct: 18 VKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSF 77
Query: 66 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
D+S + SG DK+V+LW+V +GQ VR++R HA KV V+FNE+++V++SGS D+++ WD
Sbjct: 78 DNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSIRCWD 137
Query: 126 VKSRSHHPIQCCLDSKDS---------QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV 176
+SR P+Q +++D ++ GS DG++ ++ L
Sbjct: 138 CRSRRPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDL----------------- 180
Query: 177 VNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFD 236
++ DY PI CF+RD QC L S D LRL D
Sbjct: 181 ---------------------RMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLD 219
Query: 237 KATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK 296
K TGELL EY GHK+ +++++CCL +D+ + S DGK+Y W LV+ + L VG
Sbjct: 220 KDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVYFWDLVEGAL--ALALPVGP 277
Query: 297 AVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQAGLSS 335
VV SL HPT +++A G V+ W EE Y G SS
Sbjct: 278 GVVQSLAYHPTEPCLLTAMGGGVQCWR-EEAYEAEGGSS 315
|
Source: Ailuropoda melanoleuca Species: Ailuropoda melanoleuca Genus: Ailuropoda Family: Ursidae Order: Carnivora Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 341 | ||||||
| FB|FBgn0028897 | 308 | CG4935 [Drosophila melanogaste | 0.434 | 0.480 | 0.608 | 6e-48 | |
| MGI|MGI:1915086 | 315 | Wdr83 "WD repeat domain contai | 0.683 | 0.739 | 0.406 | 1.3e-45 | |
| RGD|1306947 | 315 | Wdr83 "WD repeat domain 83" [R | 0.683 | 0.739 | 0.402 | 4.4e-45 | |
| UNIPROTKB|E2RRL3 | 315 | WDR83 "Uncharacterized protein | 0.683 | 0.739 | 0.398 | 1.2e-44 | |
| UNIPROTKB|F1SEX9 | 311 | WDR83 "Uncharacterized protein | 0.686 | 0.752 | 0.396 | 1.5e-44 | |
| UNIPROTKB|Q9BRX9 | 315 | WDR83 "WD repeat domain-contai | 0.683 | 0.739 | 0.398 | 1.9e-44 | |
| UNIPROTKB|Q0VCN2 | 315 | MORG1 "Mitogen-activated prote | 0.680 | 0.736 | 0.392 | 3.1e-44 | |
| ZFIN|ZDB-GENE-040718-126 | 315 | wdr83 "WD repeat domain contai | 0.683 | 0.739 | 0.401 | 2.5e-42 | |
| WB|WBGene00018014 | 305 | F33G12.2 [Caenorhabditis elega | 0.554 | 0.619 | 0.443 | 2.6e-40 | |
| UNIPROTKB|Q19986 | 305 | F33G12.2 "Protein F33G12.2" [C | 0.554 | 0.619 | 0.443 | 2.6e-40 |
| FB|FBgn0028897 CG4935 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 90/148 (60%), Positives = 112/148 (75%)
Query: 8 TIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDS 67
TIDCKQGA+RAVR+NVDG+YCL+CGSDKKIKLWNP LLLKTYGGHA EV DA +CDS
Sbjct: 12 TIDCKQGAVRAVRYNVDGTYCLSCGSDKKIKLWNPASGLLLKTYGGHADEVTDAAGSCDS 71
Query: 68 SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 127
S I S + DKS+I W+V+TG PVRR R HA V CV FNEDSS+ ISG +DN VM WD++
Sbjct: 72 SYIVSASLDKSIIYWDVSTGAPVRRLRSHAGGVRCVCFNEDSSIAISGGRDNAVMCWDIR 131
Query: 128 SRSHHPIQCCLDSKDSQIFCGSSDGKIY 155
+R P+Q +++D +++ +IY
Sbjct: 132 TRRLDPVQVMKEARDCITTVATNENRIY 159
|
|
| MGI|MGI:1915086 Wdr83 "WD repeat domain containing 83" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 104/256 (40%), Positives = 158/256 (61%)
Query: 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 65
++T+DC QGA+RAVRFNVDG+YCLTCGSDK +KLWNP R LL+TY GH +EV DA +
Sbjct: 18 MKTLDCSQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSF 77
Query: 66 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
D+S + SG DK+V+LW+V TGQ VR++R HA KV V+FNE+++V++SGS D++V WD
Sbjct: 78 DNSHLCSGGGDKTVVLWDVATGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWD 137
Query: 126 VKSRSHHPIQCCLDSKDS---------QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV 176
+SR P+Q +++D +I GS DG++ ++ L Q+S+ VG +
Sbjct: 138 CRSRKPEPVQTLDEARDGISSVKVSDHEILAGSVDGRVRRYDL-RMGQVSS--DYVGSPI 194
Query: 177 VNSLCSHPTRKHIMSACGNNVKLW---TAE--EDY----GQEPIVDACFT-RDCQCILTC 226
+ S + ++S+ + ++L T E +Y Q+ +D C + RD +++C
Sbjct: 195 TCTCFSRDGQCTLISSLDSTLRLLDKDTGELLGEYVGHKNQQYKLDCCLSERDTH-VVSC 253
Query: 227 STDECLRLFDKATGEL 242
S D + +D G L
Sbjct: 254 SEDGKVFFWDLVEGAL 269
|
|
| RGD|1306947 Wdr83 "WD repeat domain 83" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 103/256 (40%), Positives = 158/256 (61%)
Query: 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 65
++T+DC QGA+RAVRFNVDG+YCLTCGSDK +KLWNP R LL+TY GH +EV DA +
Sbjct: 18 LKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSF 77
Query: 66 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
D+S + SG DK+V+LW+V TGQ VR++R HA KV V+FNE+++V++SGS D++V WD
Sbjct: 78 DNSHLCSGGGDKTVVLWDVATGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWD 137
Query: 126 VKSRSHHPIQCCLDSKDS---------QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV 176
+SR P+Q +++D +I GS DG++ ++ L Q+++ VG +
Sbjct: 138 CRSRKPEPVQTLDEARDGISSVKVSDHEILAGSVDGRVRRYDL-RMGQVTS--DYVGSPI 194
Query: 177 VNSLCSHPTRKHIMSACGNNVKLW---TAE--EDY----GQEPIVDACFT-RDCQCILTC 226
+ S + ++S+ + ++L T E +Y Q+ +D C + RD +++C
Sbjct: 195 TCTCFSRDGQCTLISSLDSTLRLLDKDTGELLGEYVGHKNQKYKLDCCLSERDTH-VVSC 253
Query: 227 STDECLRLFDKATGEL 242
S D + +D G L
Sbjct: 254 SEDGKVFFWDLVEGSL 269
|
|
| UNIPROTKB|E2RRL3 WDR83 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 102/256 (39%), Positives = 155/256 (60%)
Query: 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 65
V+T+DC QGA+RAVRFNVDG+YCLTCGSDK +KLWNP R LL+TY GH +EV DA +
Sbjct: 18 VKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSF 77
Query: 66 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
D+S + SG DK+V+LW+V +GQ VR++R HA KV V+FNE+++V++SGS D+++ WD
Sbjct: 78 DNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSIRCWD 137
Query: 126 VKSRSHHPIQCCLDSKDS---------QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV 176
+SR P+Q +++D ++ GS DG++ ++ L S VG +
Sbjct: 138 CRSRRPEPVQTLDEARDGISSVKVSDHEVLSGSVDGRVRRYDLRMGQLFSDY---VGSPI 194
Query: 177 VNSLCSHPTRKHIMSACGNNVKLW---TAE--EDY----GQEPIVDACFT-RDCQCILTC 226
+ S + ++S+ + ++L T E +Y QE +D C + RD +++C
Sbjct: 195 TCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTH-VVSC 253
Query: 227 STDECLRLFDKATGEL 242
S D + +D G L
Sbjct: 254 SEDGKVYFWDLVEGAL 269
|
|
| UNIPROTKB|F1SEX9 WDR83 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
Identities = 102/257 (39%), Positives = 156/257 (60%)
Query: 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 65
++T+DC QGA+RAVRFNVDG+YCLTCGSDK +KLWNP R LL+TY GH +EV DA +
Sbjct: 18 LKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSF 77
Query: 66 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
D+S + SG DK+V+LW+V +GQ VR++R HA KV V+FNE+++V++SGS D++V WD
Sbjct: 78 DNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWD 137
Query: 126 VKSRSHHPIQCCLDSKDS---------QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV 176
+SR P+Q +++D ++ GS DG++ ++ L S VG +
Sbjct: 138 CRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDY---VGSPI 194
Query: 177 VNSLCSHPTRKHIMSACGNNVKLW---TAE--EDY----GQEPIVDACFT-RDCQCILTC 226
+ S + ++S+ + ++L T E +Y QE +D C + RD +++C
Sbjct: 195 TCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTH-VVSC 253
Query: 227 STDECLRLFDKATGELL 243
S D + +D G L+
Sbjct: 254 SEDGKVFFWDLVEGVLV 270
|
|
| UNIPROTKB|Q9BRX9 WDR83 "WD repeat domain-containing protein 83" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 102/256 (39%), Positives = 155/256 (60%)
Query: 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 65
++T+DC QGA+RAVRFNVDG+YCLTCGSDK +KLWNP R LL+TY GH +EV DA +
Sbjct: 18 LKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSF 77
Query: 66 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
D+S + SG DK+V+LW+V +GQ VR++R HA KV V+FNE+++V++SGS D+++ WD
Sbjct: 78 DNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSIRCWD 137
Query: 126 VKSRSHHPIQCCLDSKDS---------QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV 176
+SR P+Q +++D +I GS DG++ ++ L S VG +
Sbjct: 138 CRSRRPEPVQTLDEARDGVSSVKVSDHEILAGSVDGRVRRYDLRMGQLFSDY---VGSPI 194
Query: 177 VNSLCSHPTRKHIMSACGNNVKLW---TAE--EDY----GQEPIVDACFT-RDCQCILTC 226
+ S + ++S+ + ++L T E +Y QE +D C + RD +++C
Sbjct: 195 TCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYKGHKNQEYKLDCCLSERDTH-VVSC 253
Query: 227 STDECLRLFDKATGEL 242
S D + +D G L
Sbjct: 254 SEDGKVFFWDLVEGAL 269
|
|
| UNIPROTKB|Q0VCN2 MORG1 "Mitogen-activated protein kinase organizer 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 101/257 (39%), Positives = 156/257 (60%)
Query: 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 65
++T+DC QGA+RAVRFNVDG+YCLTCGSDK +KLWNP R LL+TY GH +EV DA +
Sbjct: 18 LKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSF 77
Query: 66 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
D+S + SG DK+V+LW+V +GQ VR++R HA KV V+FNE+++V++SGS D+T+ WD
Sbjct: 78 DNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSTIRCWD 137
Query: 126 VKSRSHHPIQCCLDSKDS---------QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV 176
+SR P+Q +++D ++ GS DG++ ++ L S + S
Sbjct: 138 CRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSP---- 193
Query: 177 VNSLC-SHPTRKHIMSACGNNVKLW---TAE--EDY----GQEPIVDACFT-RDCQCILT 225
+ +C S + ++S+ + ++L T E +Y +E +D C + RD +++
Sbjct: 194 ITCICFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNKEYKLDCCLSERDTH-VVS 252
Query: 226 CSTDECLRLFDKATGEL 242
CS D + +D G L
Sbjct: 253 CSEDGKVFFWDLVEGAL 269
|
|
| ZFIN|ZDB-GENE-040718-126 wdr83 "WD repeat domain containing 83" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 102/254 (40%), Positives = 148/254 (58%)
Query: 7 QTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD 66
+T+DC+QGA+RAVRFN DG+Y LTCGSDK +KLW+ R LLKTY GH +EV DA + D
Sbjct: 19 RTVDCQQGAVRAVRFNADGNYLLTCGSDKSLKLWSVSRGTLLKTYSGHGYEVLDADGSYD 78
Query: 67 SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126
+SQ+ S +SDK+VILW+V +GQ R+ R HA KV CV+FNE+++V++SGS D TV WD
Sbjct: 79 NSQLCSCSSDKTVILWDVASGQVTRKLRGHAGKVNCVQFNEEATVMLSGSIDGTVRCWDT 138
Query: 127 KSRSHHPIQCCLDSKDS---------QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVV 177
+SR PIQ +S+D ++ GS DG++ ++ L Q+ + +G +
Sbjct: 139 RSRRMEPIQILDESQDGISSLKVSEHELLTGSVDGRVRRYDL-RMGQLQ--VDYIGSPIT 195
Query: 178 NSLCSHPTRKHIMSACGNNVKLW---TAEE--DYGQEPI----VDACFTRDCQCILTCST 228
S + + S+ + V+L T E +Y +D C T +L+CS
Sbjct: 196 CVCFSRDGQCTLSSSLDSTVRLLDKSTGEMLGEYSGHVNKGYKLDCCLTDKDTHVLSCSE 255
Query: 229 DECLRLFDKATGEL 242
D + +D G L
Sbjct: 256 DGHVYYWDLVEGSL 269
|
|
| WB|WBGene00018014 F33G12.2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 90/203 (44%), Positives = 131/203 (64%)
Query: 7 QTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD 66
+ IDCKQGA+RAVR+NVDG+YC+TCGSDK +KLWNP ++ LLKTY G +EV DA ++ D
Sbjct: 10 RAIDCKQGAVRAVRYNVDGNYCVTCGSDKTVKLWNPLKSSLLKTYSGTGNEVLDAASSSD 69
Query: 67 SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126
+SQIA+G +D++ +++V TG+ +RRWR H ++V V FNE+SSVV SGS D T+ +D
Sbjct: 70 NSQIAAGGADRACTVFDVETGKQLRRWRTHGAQVNAVAFNEESSVVFSGSMDCTMQAFDC 129
Query: 127 KSRSHHPIQCCLDSKDS---------QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVV 177
+SRS PIQ +S D +I GS+DG + + D + + +G +V
Sbjct: 130 RSRSEKPIQIFNESTDGILSIDVNGHEIVAGSADGNYRVYSIRDGNMT---VDYMGDSV- 185
Query: 178 NSLCSHPTRKHIMSAC-GNNVKL 199
NS+ P +++ G V+L
Sbjct: 186 NSVSFTPDSNCLLAGVMGGIVRL 208
|
|
| UNIPROTKB|Q19986 F33G12.2 "Protein F33G12.2" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 90/203 (44%), Positives = 131/203 (64%)
Query: 7 QTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD 66
+ IDCKQGA+RAVR+NVDG+YC+TCGSDK +KLWNP ++ LLKTY G +EV DA ++ D
Sbjct: 10 RAIDCKQGAVRAVRYNVDGNYCVTCGSDKTVKLWNPLKSSLLKTYSGTGNEVLDAASSSD 69
Query: 67 SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126
+SQIA+G +D++ +++V TG+ +RRWR H ++V V FNE+SSVV SGS D T+ +D
Sbjct: 70 NSQIAAGGADRACTVFDVETGKQLRRWRTHGAQVNAVAFNEESSVVFSGSMDCTMQAFDC 129
Query: 127 KSRSHHPIQCCLDSKDS---------QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVV 177
+SRS PIQ +S D +I GS+DG + + D + + +G +V
Sbjct: 130 RSRSEKPIQIFNESTDGILSIDVNGHEIVAGSADGNYRVYSIRDGNMT---VDYMGDSV- 185
Query: 178 NSLCSHPTRKHIMSAC-GNNVKL 199
NS+ P +++ G V+L
Sbjct: 186 NSVSFTPDSNCLLAGVMGGIVRL 208
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9BRX9 | WDR83_HUMAN | No assigned EC number | 0.4133 | 0.8211 | 0.8888 | yes | N/A |
| Q9DAJ4 | WDR83_MOUSE | No assigned EC number | 0.4142 | 0.8416 | 0.9111 | yes | N/A |
| Q6DH44 | WDR83_DANRE | No assigned EC number | 0.4181 | 0.8240 | 0.8920 | yes | N/A |
| Q5XGI5 | WDR83_XENTR | No assigned EC number | 0.4144 | 0.8240 | 0.8949 | yes | N/A |
| Q5BLX8 | WDR83_RAT | No assigned EC number | 0.4142 | 0.8416 | 0.9111 | yes | N/A |
| Q54H44 | WDR83_DICDI | No assigned EC number | 0.2784 | 0.9266 | 0.9723 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 341 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-47 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-25 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-23 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-20 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-12 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-09 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-06 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 5e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 6e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 1e-04 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 160 bits (408), Expect = 4e-47
Identities = 91/330 (27%), Positives = 142/330 (43%), Gaps = 54/330 (16%)
Query: 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAA 64
+T+ G + V F+ DG T D IK+W+ LL+T GH V D A+
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 65 CDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 124
D + +ASG+SDK++ LW++ TG+ VR H S V+ V F+ D ++ S S+D T+ +W
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120
Query: 125 DVKS-------RSH-HPIQCCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLIHSVGKA 175
DV++ R H + S D + S DG I W L ++TL G
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-- 178
Query: 176 VVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLF 235
VNS+ P + +L+ S+D ++L+
Sbjct: 179 EVNSVAFSPDGEK----------------------------------LLSSSSDGTIKLW 204
Query: 236 DKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLI-HS 293
D +TG+ L +GH++G + S D + S DG I W L + TL H+
Sbjct: 205 DLSTGKCLGTLRGHENG---VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT 261
Query: 294 VGKAVVNSLCSHPTRKHIMSACGNN-VKLW 322
V SL P K + S + +++W
Sbjct: 262 NS---VTSLAWSPDGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-25
Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 9/165 (5%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT 62
C+ T+ + +V F+ DG++ + D IKLW+ + T GH EVN
Sbjct: 125 GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVA 184
Query: 63 AACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVM 122
+ D ++ S +SD ++ LW+++TG+ + R H + V V F+ D ++ SGS+D T+
Sbjct: 185 FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIR 244
Query: 123 MWDVKSRSH--------HPIQCCLDSKDSQIFC-GSSDGKIYKWQ 158
+WD+++ + + S D + GS+DG I W
Sbjct: 245 VWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (249), Expect = 2e-23
Identities = 81/298 (27%), Positives = 132/298 (44%), Gaps = 24/298 (8%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGS-DKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
++T++ ++ ++ F+ DG + S D IKLW+ L T GH V+
Sbjct: 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL 204
Query: 62 TAACDSS-QIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120
+ D IASG+SD ++ LW+++TG+ +R S F+ D S++ SGS D T
Sbjct: 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGT 264
Query: 121 VMMWDVKSRSHHPI----------QCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH 170
+ +WD++S S + GSSDG + W L +S+L
Sbjct: 265 IRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTL 324
Query: 171 SVGKAVVNSLCSHPTRKHIMSACGNN--VKLWTAEEDY------GQEPIVDACFTRDCQC 222
+ V+SL P ++S ++ ++LW G ++ F+ D +
Sbjct: 325 KGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRV 384
Query: 223 ILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFC-GSSDGKIYKW 279
+ + STD +RL+D +TG LL GH S R+ S D + GSSD I W
Sbjct: 385 VSSGSTDGTVRLWDLSTGSLLRNLDGHTS---RVTSLDFSPDGKSLASGSSDNTIRLW 439
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.9 bits (224), Expect = 3e-20
Identities = 87/345 (25%), Positives = 145/345 (42%), Gaps = 35/345 (10%)
Query: 7 QTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPY--RNLLLKTYGGHAHEVND-ATA 63
+ + +I ++ F+ DG L+ SD IKLW+ L+ G H V+ A +
Sbjct: 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS 118
Query: 64 ACDSSQIASGAS--DKSVILWEVTT-GQPVRRWREHASKVTCVKFNEDSSVVISGSQ-DN 119
+ D + I +S D +V LW+++T G+ +R H+ VT + F+ D ++ SGS D
Sbjct: 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG 178
Query: 120 TVMMWDVKSRS-------HHPIQCCLD---SKDSQIFCGSSDGKIYKWQLVDSSQISTLI 169
T+ +WD+++ H L I GSSDG I W L + + +
Sbjct: 179 TIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL 238
Query: 170 HSVGKAVVNSLCSHPTRKHIMSACGNN-VKLWTAEEDY--------GQEPIVDACFTRDC 220
+VV+S P + S + ++LW ++ F+ D
Sbjct: 239 SGHSDSVVSSF--SPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG 296
Query: 221 QCILTCSTDECLRLFDKATGELLEE--YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYK 278
+ + + S+D +RL+D TG+LL KGH+ + D + GS DG I
Sbjct: 297 KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLL-VSGGSDDGTIRL 355
Query: 279 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN-VKLW 322
W L + TL V S+ P + + S + V+LW
Sbjct: 356 WDLRTGKPLKTLEGHSN---VLSVSFSPDGRVVSSGSTDGTVRLW 397
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.0 bits (162), Expect = 3e-12
Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 13/168 (7%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWN--PYRNLLLKTYGGHAHEVN 59
+ ++T+ ++ +V F+ DG + SD ++LW+ + L T GH V+
Sbjct: 273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS 332
Query: 60 DATAACDSSQIASGAS-DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD 118
+ + D S + SG S D ++ LW++ TG+P++ H S V V F+ D VV SGS D
Sbjct: 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTD 391
Query: 119 NTVMMWDVKSRS--------HHPIQCCLDSKDSQIFC-GSSDGKIYKW 157
TV +WD+ + S + S D + GSSD I W
Sbjct: 392 GTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.5 bits (158), Expect = 8e-12
Identities = 65/260 (25%), Positives = 94/260 (36%), Gaps = 31/260 (11%)
Query: 92 RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ-----------CCLDS 140
R H +T + F+ D +++SGS D T+ +WD+ + L S
Sbjct: 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119
Query: 141 KDSQIF---CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG--N 195
D S DG + W L ++ + V SL P K + S
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLAFSPDGKLLASGSSLDG 178
Query: 196 NVKLWTAEEDYGQE-------PIVDACFTRDCQC-ILTCSTDECLRLFDKATGELL-EEY 246
+KLW P+ F+ D I + S+D +RL+D +TG+LL
Sbjct: 179 TIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL 238
Query: 247 KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 306
GH S + GSSDG I W L SS S + V S+ P
Sbjct: 239 SGHSDSVVS---SFSPDGSLLASGSSDGTIRLWDL-RSSSSLLRTLSGHSSSVLSVAFSP 294
Query: 307 TRKHIMSACG-NNVKLWTAE 325
K + S V+LW E
Sbjct: 295 DGKLLASGSSDGTVRLWDLE 314
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 9e-11
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 7/118 (5%)
Query: 210 PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFC 269
+ F+ D + + T S D ++++D TGELL KGH + D +
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT--YLAS 68
Query: 270 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAE 325
GSSD I W L + TL + V+S+ P I+S+ +K+W E
Sbjct: 69 GSSDKTIRLWDLETGECVRTLTGH--TSYVSSVAFSPDG-RILSSSSRDKTIKVWDVE 123
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.9 bits (141), Expect = 1e-09
Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 8 TIDCKQGAIRAVRFNVDGSYCLTCGS-DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD 66
T+ +G + ++ F+ DGS ++ GS D I+LW+ LKT GH V + + D
Sbjct: 323 TLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPD 381
Query: 67 SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126
++SG++D +V LW+++TG +R H S+VT + F+ D + SGS DNT+ +WD+
Sbjct: 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441
Query: 127 KSRSHH 132
K+
Sbjct: 442 KTSLKS 447
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-07
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
+G+ ++ + H VT V F+ D + SGS D T+ +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-06
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 87 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
G+ +R + H VT V F+ D +++ SGS D TV +WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (113), Expect = 5e-06
Identities = 60/223 (26%), Positives = 104/223 (46%), Gaps = 40/223 (17%)
Query: 10 DCKQG-------AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT 62
D KQG + A+ F+ DG + T G +KKIK++ +++ H V A+
Sbjct: 473 DLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFE-CESIIKDGRDIHYPVVELAS 531
Query: 63 AACDS---------SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNE-DSSVV 112
+ S SQ+AS + V +W+V Q V +EH +V + ++ D +++
Sbjct: 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLL 591
Query: 113 ISGSQDNTVMMWD---------VKSRSHHPIQCCL----DSKDSQIFCGSSDGKIYKWQL 159
SGS D +V +W +K++++ CC+ +S S F GS+D K+Y + L
Sbjct: 592 ASGSDDGSVKLWSINQGVSIGTIKTKAN---ICCVQFPSESGRSLAF-GSADHKVYYYDL 647
Query: 160 VDSS-QISTLI-HSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 200
+ + T+I HS + V + S + S+ N +KLW
Sbjct: 648 RNPKLPLCTMIGHSKTVSYVRFVDSSTL---VSSSTDNTLKLW 687
|
Length = 793 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 6e-05
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWN 41
++T+ G + +V F+ DG Y + D IKLW+
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 1e-04
Identities = 8/38 (21%), Positives = 20/38 (52%)
Query: 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWN 41
++T+ G + +V F+ DG+ + D +++W+
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (91), Expect = 0.003
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Query: 34 DKKIKLWNPYRNLLLKTYGGHAHEV-NDATAACDSSQIASGASDKSVILWEVTTGQPVRR 92
+ +++W+ R+ L+ H V + ++ D + +ASG+ D SV LW + G +
Sbjct: 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613
Query: 93 WREHASKVTCVKFNEDSSVVIS-GSQDNTVMMWDVKSRS--------HHPIQCCLDSKDS 143
+ A+ + CV+F +S ++ GS D+ V +D+++ H + DS
Sbjct: 614 IKTKAN-ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDS 672
Query: 144 QIFCGSS-DGKIYKWQL 159
SS D + W L
Sbjct: 673 STLVSSSTDNTLKLWDL 689
|
Length = 793 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 341 | |||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0316|consensus | 307 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0293|consensus | 519 | 100.0 | ||
| KOG0285|consensus | 460 | 100.0 | ||
| KOG0265|consensus | 338 | 100.0 | ||
| KOG0296|consensus | 399 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| KOG0295|consensus | 406 | 100.0 | ||
| KOG0282|consensus | 503 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0645|consensus | 312 | 100.0 | ||
| KOG0284|consensus | 464 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0266|consensus | 456 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG1446|consensus | 311 | 100.0 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0306|consensus | 888 | 100.0 | ||
| KOG0281|consensus | 499 | 100.0 | ||
| KOG0306|consensus | 888 | 100.0 | ||
| KOG0296|consensus | 399 | 100.0 | ||
| KOG1407|consensus | 313 | 100.0 | ||
| KOG0278|consensus | 334 | 100.0 | ||
| KOG0643|consensus | 327 | 100.0 | ||
| KOG0288|consensus | 459 | 100.0 | ||
| KOG0276|consensus | 794 | 100.0 | ||
| KOG0292|consensus | 1202 | 100.0 | ||
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0313|consensus | 423 | 100.0 | ||
| KOG0275|consensus | 508 | 100.0 | ||
| KOG0295|consensus | 406 | 100.0 | ||
| KOG0283|consensus | 712 | 100.0 | ||
| KOG0772|consensus | 641 | 100.0 | ||
| KOG0292|consensus | 1202 | 100.0 | ||
| KOG0266|consensus | 456 | 100.0 | ||
| KOG0640|consensus | 430 | 100.0 | ||
| KOG0285|consensus | 460 | 100.0 | ||
| KOG0294|consensus | 362 | 100.0 | ||
| KOG0282|consensus | 503 | 100.0 | ||
| KOG0268|consensus | 433 | 100.0 | ||
| KOG1539|consensus | 910 | 100.0 | ||
| KOG0284|consensus | 464 | 100.0 | ||
| KOG0265|consensus | 338 | 100.0 | ||
| KOG0645|consensus | 312 | 100.0 | ||
| KOG0973|consensus | 942 | 100.0 | ||
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG0647|consensus | 347 | 100.0 | ||
| KOG0274|consensus | 537 | 100.0 | ||
| KOG0281|consensus | 499 | 100.0 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0278|consensus | 334 | 100.0 | ||
| KOG0293|consensus | 519 | 100.0 | ||
| KOG0276|consensus | 794 | 100.0 | ||
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| PTZ00420 | 568 | coronin; Provisional | 100.0 | |
| KOG0641|consensus | 350 | 100.0 | ||
| KOG1408|consensus | 1080 | 100.0 | ||
| KOG1408|consensus | 1080 | 100.0 | ||
| KOG1036|consensus | 323 | 100.0 | ||
| KOG0301|consensus | 745 | 100.0 | ||
| KOG0316|consensus | 307 | 100.0 | ||
| KOG0289|consensus | 506 | 100.0 | ||
| KOG0310|consensus | 487 | 100.0 | ||
| KOG0300|consensus | 481 | 100.0 | ||
| PTZ00420 | 568 | coronin; Provisional | 100.0 | |
| KOG0305|consensus | 484 | 100.0 | ||
| KOG0299|consensus | 479 | 100.0 | ||
| KOG0277|consensus | 311 | 100.0 | ||
| KOG2096|consensus | 420 | 100.0 | ||
| KOG0308|consensus | 735 | 100.0 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0283|consensus | 712 | 100.0 | ||
| KOG1539|consensus | 910 | 100.0 | ||
| KOG0275|consensus | 508 | 100.0 | ||
| KOG1407|consensus | 313 | 100.0 | ||
| KOG1273|consensus | 405 | 100.0 | ||
| KOG0973|consensus | 942 | 100.0 | ||
| KOG0313|consensus | 423 | 99.98 | ||
| KOG0274|consensus | 537 | 99.98 | ||
| KOG1063|consensus | 764 | 99.98 | ||
| KOG1332|consensus | 299 | 99.98 | ||
| KOG2106|consensus | 626 | 99.97 | ||
| KOG2106|consensus | 626 | 99.97 | ||
| KOG0643|consensus | 327 | 99.97 | ||
| KOG0294|consensus | 362 | 99.97 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.97 | |
| KOG0640|consensus | 430 | 99.97 | ||
| KOG0299|consensus | 479 | 99.97 | ||
| KOG0264|consensus | 422 | 99.97 | ||
| KOG0650|consensus | 733 | 99.97 | ||
| KOG2048|consensus | 691 | 99.97 | ||
| KOG0321|consensus | 720 | 99.97 | ||
| KOG0310|consensus | 487 | 99.97 | ||
| KOG0288|consensus | 459 | 99.97 | ||
| KOG1063|consensus | 764 | 99.97 | ||
| KOG1446|consensus | 311 | 99.97 | ||
| KOG1445|consensus | 1012 | 99.97 | ||
| KOG0289|consensus | 506 | 99.97 | ||
| KOG2445|consensus | 361 | 99.97 | ||
| KOG0277|consensus | 311 | 99.97 | ||
| KOG1274|consensus | 933 | 99.97 | ||
| KOG2055|consensus | 514 | 99.97 | ||
| KOG2048|consensus | 691 | 99.96 | ||
| KOG0646|consensus | 476 | 99.96 | ||
| KOG0267|consensus | 825 | 99.96 | ||
| KOG0300|consensus | 481 | 99.96 | ||
| KOG0305|consensus | 484 | 99.96 | ||
| KOG0308|consensus | 735 | 99.96 | ||
| KOG0639|consensus | 705 | 99.96 | ||
| KOG4328|consensus | 498 | 99.96 | ||
| KOG0647|consensus | 347 | 99.96 | ||
| KOG0772|consensus | 641 | 99.96 | ||
| KOG0646|consensus | 476 | 99.95 | ||
| KOG0641|consensus | 350 | 99.95 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.95 | |
| KOG0268|consensus | 433 | 99.95 | ||
| KOG4283|consensus | 397 | 99.95 | ||
| KOG0269|consensus | 839 | 99.95 | ||
| KOG0639|consensus | 705 | 99.95 | ||
| KOG0264|consensus | 422 | 99.95 | ||
| KOG0269|consensus | 839 | 99.95 | ||
| KOG1274|consensus | 933 | 99.95 | ||
| KOG0301|consensus | 745 | 99.95 | ||
| KOG2445|consensus | 361 | 99.95 | ||
| KOG1034|consensus | 385 | 99.95 | ||
| KOG0321|consensus | 720 | 99.94 | ||
| KOG1538|consensus | 1081 | 99.94 | ||
| KOG2919|consensus | 406 | 99.94 | ||
| KOG2096|consensus | 420 | 99.94 | ||
| KOG1036|consensus | 323 | 99.94 | ||
| KOG0307|consensus | 1049 | 99.94 | ||
| KOG1273|consensus | 405 | 99.94 | ||
| KOG0270|consensus | 463 | 99.94 | ||
| KOG4283|consensus | 397 | 99.94 | ||
| KOG0322|consensus | 323 | 99.94 | ||
| KOG1009|consensus | 434 | 99.93 | ||
| KOG0642|consensus | 577 | 99.93 | ||
| KOG0267|consensus | 825 | 99.93 | ||
| KOG0650|consensus | 733 | 99.93 | ||
| KOG0644|consensus | 1113 | 99.93 | ||
| KOG1445|consensus | 1012 | 99.93 | ||
| KOG1310|consensus | 758 | 99.93 | ||
| KOG2055|consensus | 514 | 99.93 | ||
| KOG4227|consensus | 609 | 99.93 | ||
| KOG1332|consensus | 299 | 99.93 | ||
| KOG0302|consensus | 440 | 99.92 | ||
| KOG4328|consensus | 498 | 99.91 | ||
| KOG0302|consensus | 440 | 99.91 | ||
| KOG4378|consensus | 673 | 99.91 | ||
| KOG1963|consensus | 792 | 99.91 | ||
| KOG2919|consensus | 406 | 99.91 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.91 | |
| KOG0303|consensus | 472 | 99.9 | ||
| KOG0303|consensus | 472 | 99.9 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.9 | |
| KOG4378|consensus | 673 | 99.9 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.9 | |
| KOG1334|consensus | 559 | 99.9 | ||
| KOG1188|consensus | 376 | 99.89 | ||
| KOG0270|consensus | 463 | 99.88 | ||
| KOG1538|consensus | 1081 | 99.88 | ||
| KOG1007|consensus | 370 | 99.88 | ||
| KOG0307|consensus | 1049 | 99.88 | ||
| KOG2110|consensus | 391 | 99.87 | ||
| KOG1034|consensus | 385 | 99.87 | ||
| KOG1240|consensus | 1431 | 99.87 | ||
| KOG0642|consensus | 577 | 99.87 | ||
| KOG1587|consensus | 555 | 99.87 | ||
| KOG4497|consensus | 447 | 99.87 | ||
| KOG0771|consensus | 398 | 99.87 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.87 | |
| KOG1963|consensus | 792 | 99.86 | ||
| KOG1523|consensus | 361 | 99.85 | ||
| KOG1517|consensus | 1387 | 99.85 | ||
| KOG1524|consensus | 737 | 99.85 | ||
| KOG0290|consensus | 364 | 99.85 | ||
| KOG1188|consensus | 376 | 99.85 | ||
| KOG1009|consensus | 434 | 99.85 | ||
| KOG2111|consensus | 346 | 99.85 | ||
| KOG2110|consensus | 391 | 99.84 | ||
| KOG0649|consensus | 325 | 99.84 | ||
| KOG0649|consensus | 325 | 99.84 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.84 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.83 | |
| KOG2394|consensus | 636 | 99.82 | ||
| KOG1524|consensus | 737 | 99.81 | ||
| KOG1007|consensus | 370 | 99.81 | ||
| KOG1240|consensus | 1431 | 99.8 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.8 | |
| KOG1272|consensus | 545 | 99.8 | ||
| KOG2139|consensus | 445 | 99.8 | ||
| KOG1587|consensus | 555 | 99.8 | ||
| KOG1517|consensus | 1387 | 99.79 | ||
| KOG4227|consensus | 609 | 99.79 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.78 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.77 | |
| KOG3881|consensus | 412 | 99.76 | ||
| KOG0290|consensus | 364 | 99.76 | ||
| KOG2315|consensus | 566 | 99.76 | ||
| KOG1354|consensus | 433 | 99.75 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.75 | |
| KOG1523|consensus | 361 | 99.74 | ||
| KOG0644|consensus | 1113 | 99.73 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.73 | |
| KOG4497|consensus | 447 | 99.73 | ||
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.73 | |
| KOG2321|consensus | 703 | 99.72 | ||
| KOG1272|consensus | 545 | 99.72 | ||
| KOG0322|consensus | 323 | 99.72 | ||
| KOG1310|consensus | 758 | 99.71 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.71 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.71 | |
| KOG2394|consensus | 636 | 99.71 | ||
| KOG3881|consensus | 412 | 99.71 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.71 | |
| KOG1409|consensus | 404 | 99.7 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.7 | |
| KOG2314|consensus | 698 | 99.69 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.69 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.68 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.68 | |
| KOG2139|consensus | 445 | 99.68 | ||
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.68 | |
| KOG2321|consensus | 703 | 99.67 | ||
| KOG1912|consensus | 1062 | 99.67 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.67 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.67 | |
| KOG2111|consensus | 346 | 99.66 | ||
| KOG1354|consensus | 433 | 99.66 | ||
| KOG2041|consensus | 1189 | 99.66 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.65 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.63 | |
| KOG0974|consensus | 967 | 99.62 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.62 | |
| KOG2315|consensus | 566 | 99.62 | ||
| KOG0974|consensus | 967 | 99.61 | ||
| KOG0771|consensus | 398 | 99.6 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.6 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.6 | |
| KOG4547|consensus | 541 | 99.59 | ||
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.57 | |
| KOG4547|consensus | 541 | 99.57 | ||
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.56 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.56 | |
| KOG1334|consensus | 559 | 99.55 | ||
| KOG1064|consensus | 2439 | 99.53 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.52 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.52 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.51 | |
| KOG4190|consensus | 1034 | 99.5 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.5 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.48 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.47 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.46 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.45 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.45 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.44 | |
| KOG0280|consensus | 339 | 99.44 | ||
| KOG2041|consensus | 1189 | 99.43 | ||
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.39 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.37 | |
| KOG2314|consensus | 698 | 99.36 | ||
| KOG1409|consensus | 404 | 99.36 | ||
| KOG1912|consensus | 1062 | 99.36 | ||
| KOG4190|consensus | 1034 | 99.36 | ||
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.34 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.33 | |
| KOG1064|consensus | 2439 | 99.28 | ||
| KOG0309|consensus | 1081 | 99.26 | ||
| KOG0280|consensus | 339 | 99.26 | ||
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.26 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.25 | |
| KOG4532|consensus | 344 | 99.24 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 99.24 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.23 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 99.22 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.21 | |
| KOG0882|consensus | 558 | 99.2 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.19 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.18 | |
| KOG3914|consensus | 390 | 99.18 | ||
| KOG4532|consensus | 344 | 99.17 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.17 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.17 | |
| KOG1645|consensus | 463 | 99.16 | ||
| KOG1832|consensus | 1516 | 99.14 | ||
| KOG4649|consensus | 354 | 99.12 | ||
| KOG2695|consensus | 425 | 99.12 | ||
| KOG3914|consensus | 390 | 99.08 | ||
| KOG3617|consensus | 1416 | 99.04 | ||
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 99.03 | |
| KOG1920|consensus | 1265 | 99.03 | ||
| KOG0309|consensus | 1081 | 99.01 | ||
| KOG1645|consensus | 463 | 99.01 | ||
| KOG4714|consensus | 319 | 98.99 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.99 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.97 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.96 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.94 | |
| KOG3621|consensus | 726 | 98.92 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.92 | |
| KOG2114|consensus | 933 | 98.91 | ||
| KOG2695|consensus | 425 | 98.9 | ||
| KOG0882|consensus | 558 | 98.87 | ||
| KOG4649|consensus | 354 | 98.86 | ||
| KOG4714|consensus | 319 | 98.85 | ||
| KOG1275|consensus | 1118 | 98.83 | ||
| KOG2114|consensus | 933 | 98.82 | ||
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.8 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.78 | |
| KOG2066|consensus | 846 | 98.78 | ||
| KOG1832|consensus | 1516 | 98.7 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.68 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.67 | |
| KOG1920|consensus | 1265 | 98.66 | ||
| KOG2066|consensus | 846 | 98.64 | ||
| KOG1275|consensus | 1118 | 98.63 | ||
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.63 | |
| KOG3617|consensus | 1416 | 98.62 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.61 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.6 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 98.6 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.58 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.58 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.58 | |
| KOG1897|consensus | 1096 | 98.55 | ||
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.5 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.49 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.49 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.43 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.42 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.41 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.36 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.35 | |
| KOG4640|consensus | 665 | 98.35 | ||
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 98.35 | |
| KOG3621|consensus | 726 | 98.32 | ||
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.31 | |
| KOG1008|consensus | 783 | 98.3 | ||
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 98.27 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.24 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.22 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 98.18 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.16 | |
| KOG1897|consensus | 1096 | 98.12 | ||
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.09 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.08 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.05 | |
| KOG4640|consensus | 665 | 98.03 | ||
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.02 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.98 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.9 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.88 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.87 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.85 | |
| KOG2079|consensus | 1206 | 97.84 | ||
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.83 | |
| KOG1008|consensus | 783 | 97.82 | ||
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.81 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.8 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.79 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.77 | |
| KOG2395|consensus | 644 | 97.74 | ||
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.7 | |
| KOG4441|consensus | 571 | 97.67 | ||
| KOG2444|consensus | 238 | 97.65 | ||
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.64 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 97.57 | |
| KOG2444|consensus | 238 | 97.56 | ||
| PHA02713 | 557 | hypothetical protein; Provisional | 97.54 | |
| KOG2079|consensus | 1206 | 97.53 | ||
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.52 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.5 | |
| KOG2395|consensus | 644 | 97.45 | ||
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.38 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.37 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.34 | |
| PRK10115 | 686 | protease 2; Provisional | 97.3 | |
| KOG4499|consensus | 310 | 97.3 | ||
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.27 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.22 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.22 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 97.21 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.16 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.13 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 97.11 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.1 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.98 | |
| KOG1898|consensus | 1205 | 96.97 | ||
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.88 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.87 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.83 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.81 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 96.75 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.69 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.64 | |
| KOG2280|consensus | 829 | 96.55 | ||
| PHA02790 | 480 | Kelch-like protein; Provisional | 96.48 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.47 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.45 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 96.4 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 96.3 | |
| KOG4441|consensus | 571 | 96.26 | ||
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.17 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.14 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 96.13 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 96.13 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.01 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.96 | |
| KOG2377|consensus | 657 | 95.95 | ||
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.92 | |
| KOG3616|consensus | 1636 | 95.89 | ||
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 95.78 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.77 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.77 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 95.74 | |
| KOG2280|consensus | 829 | 95.72 | ||
| KOG1916|consensus | 1283 | 95.66 | ||
| KOG1898|consensus | 1205 | 95.64 | ||
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 95.58 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.54 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.47 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.46 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 95.42 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.36 | |
| KOG4499|consensus | 310 | 95.31 | ||
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.23 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 95.17 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.16 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.07 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 95.06 | |
| KOG2377|consensus | 657 | 94.96 | ||
| KOG1983|consensus | 993 | 94.91 | ||
| KOG3630|consensus | 1405 | 94.9 | ||
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.68 | |
| KOG1900|consensus | 1311 | 94.5 | ||
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 94.32 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 94.24 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 94.21 | |
| KOG2247|consensus | 615 | 94.2 | ||
| KOG1916|consensus | 1283 | 94.2 | ||
| KOG3630|consensus | 1405 | 94.06 | ||
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 94.02 | |
| KOG4460|consensus | 741 | 93.89 | ||
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 93.73 | |
| KOG1983|consensus | 993 | 93.47 | ||
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 93.45 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 93.23 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 93.02 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 92.53 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 92.38 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 92.14 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 92.14 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 92.08 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 92.08 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 92.07 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 91.96 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 91.94 | |
| KOG1900|consensus | 1311 | 91.52 | ||
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 90.98 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 90.96 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 90.95 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 90.89 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 90.85 | |
| PRK10115 | 686 | protease 2; Provisional | 90.69 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 90.61 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 90.54 | |
| PF01731 | 86 | Arylesterase: Arylesterase; InterPro: IPR002640 Th | 90.03 | |
| KOG2247|consensus | 615 | 89.84 | ||
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 89.57 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 88.99 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 88.93 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 88.61 | |
| KOG0918|consensus | 476 | 88.28 | ||
| KOG2727|consensus | 1244 | 87.51 | ||
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 87.5 | |
| KOG2063|consensus | 877 | 87.4 | ||
| PF14779 | 257 | BBS1: Ciliary BBSome complex subunit 1 | 87.32 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 87.22 | |
| KOG3616|consensus | 1636 | 86.85 | ||
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 86.4 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 86.16 | |
| KOG4659|consensus | 1899 | 86.1 | ||
| KOG4460|consensus | 741 | 85.95 | ||
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 85.79 |
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-62 Score=368.22 Aligned_cols=314 Identities=25% Similarity=0.414 Sum_probs=287.8
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
+|-..+.||.++|.|++|+|+|..|++|+.|.++++||+.+..+..+.++|...|.|++|+|||+.|++|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcee-eeecccCccEEEEEEcC-----CCcEEEEecCCCeEEEEEecCC--------CCcCeEEeecCCCceEEEee
Q psy17863 84 VTTGQPV-RRWREHASKVTCVKFNE-----DSSVVISGSQDNTVMMWDVKSR--------SHHPIQCCLDSKDSQIFCGS 149 (341)
Q Consensus 84 ~~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~ 149 (341)
..+|+++ +.+.+|...|++++|.| ..++|++++.||.++|||+..+ ...++.|+.+..++++++|+
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS 265 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGS 265 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecC
Confidence 9998765 67899999999999976 6779999999999999998874 35678888999999999999
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEEEC-----------CCCc-------------------------eEEEeC
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH-----------PTRK-------------------------HIMSAC 193 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-------------------------~~~~~~ 193 (341)
.|++|++|+...+.....+..+.+- |+.++.+ |.++ .+++++
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahw--vN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHW--VNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchh--eeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 9999999999999888888776544 7777666 3233 477777
Q ss_pred C-CceEEEEccccc--------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCC
Q psy17863 194 G-NNVKLWTAEEDY--------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKD 264 (341)
Q Consensus 194 ~-~~i~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (341)
+ .++.+|+..... |...|+.+.|+||++++++++.|..|++||.++|+.+..|++|-..|+.+ +|+.|.
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqv--awsaDs 421 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQV--AWSADS 421 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEE--EeccCc
Confidence 6 789999987644 78899999999999999999999999999999999999999999999988 899999
Q ss_pred CEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEE
Q psy17863 265 SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWT 323 (341)
Q Consensus 265 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~ 323 (341)
++|++|+.|.++++|++++.+....++ +|.+.|.++.|+|||+.+++|+ |..+++|.
T Consensus 422 RLlVS~SkDsTLKvw~V~tkKl~~DLp--Gh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 422 RLLVSGSKDSTLKVWDVRTKKLKQDLP--GHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cEEEEcCCCceEEEEEeeeeeecccCC--CCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999998 9999999999999999999999 99999995
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-51 Score=313.78 Aligned_cols=274 Identities=21% Similarity=0.293 Sum_probs=250.7
Q ss_pred eeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecC--CCEEEEecCCCcEEEEECCCC
Q psy17863 10 DCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD--SSQIASGASDKSVILWEVTTG 87 (341)
Q Consensus 10 ~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~ 87 (341)
-+-+.+|..+.|++|++.||||+.+|.++||+..+...+.+|.+|...|.++.|+|. +..|++|+.||++++|++++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 345789999999999999999999999999999999999999999999999999996 568999999999999999999
Q ss_pred ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------CcCeE-EeecCCCceEEEeeccCeEEEEE
Q psy17863 88 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQ-CCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~-~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
.++..+.+|...|..++|+|+|++|++++.|.+-++||++++. ...+. +.+.+++..+++|+.|..-++||
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD 331 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence 9999999999999999999999999999999999999999854 23333 44555566778888999999999
Q ss_pred ccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEecc
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 238 (341)
+++++++..+..+ ..+|..++|+|+|..+++|+.|++++|||++
T Consensus 332 lRtgr~im~L~gH------------------------------------~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 332 LRTGRCIMFLAGH------------------------------------IKEILSVAFSPNGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred cccCcEEEEeccc------------------------------------ccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence 9998888777553 5678899999999999999999999999999
Q ss_pred ccceeeeecCcccceeEEEEEeCC-CCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-C
Q psy17863 239 TGELLEEYKGHKSGDFRIECCLDS-KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G 316 (341)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d 316 (341)
..+.+..+.+|.+-|+.+ .|+| .|.+|++++.|++++||...+..++..+. +|.+.|.++.++||++++++++ |
T Consensus 376 ~r~~ly~ipAH~nlVS~V--k~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLa--GHe~kV~s~Dis~d~~~i~t~s~D 451 (459)
T KOG0272|consen 376 MRSELYTIPAHSNLVSQV--KYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLA--GHEGKVISLDISPDSQAIATSSFD 451 (459)
T ss_pred ccccceecccccchhhhe--EecccCCeEEEEcccCcceeeecCCCcccchhhc--CCccceEEEEeccCCceEEEeccC
Confidence 999999999999999988 7887 78899999999999999999999999999 9999999999999999999999 9
Q ss_pred CcEEEEE
Q psy17863 317 NNVKLWT 323 (341)
Q Consensus 317 ~~i~vw~ 323 (341)
.++++|.
T Consensus 452 RT~KLW~ 458 (459)
T KOG0272|consen 452 RTIKLWR 458 (459)
T ss_pred ceeeecc
Confidence 9999996
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-49 Score=281.77 Aligned_cols=284 Identities=47% Similarity=0.857 Sum_probs=260.9
Q ss_pred CceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
|.+.++.|.+|+++|+.+.|+.||+|.++++.|.+|++|++..+.+++++.+|...|..++.+.|+..+++|+.|..+.+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEE
Confidence 55677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCC---------ceEEEeeccC
Q psy17863 82 WEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKD---------SQIFCGSSDG 152 (341)
Q Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------~~~~~~~~~g 152 (341)
||+++|+.++.+.+|.+.|+.++|+.+...+++|+.|..+++||-++....|++.+....+ ..+++|+.||
T Consensus 86 wDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DG 165 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG 165 (307)
T ss_pred EEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCC
Confidence 9999999999999999999999999999999999999999999999998888877655443 3788899999
Q ss_pred eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeE
Q psy17863 153 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232 (341)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 232 (341)
+++.||++.+...... ...||++++|+++++..++++.|+++
T Consensus 166 tvRtydiR~G~l~sDy--------------------------------------~g~pit~vs~s~d~nc~La~~l~stl 207 (307)
T KOG0316|consen 166 TVRTYDIRKGTLSSDY--------------------------------------FGHPITSVSFSKDGNCSLASSLDSTL 207 (307)
T ss_pred cEEEEEeecceeehhh--------------------------------------cCCcceeEEecCCCCEEEEeecccee
Confidence 9999998886544332 35789999999999999999999999
Q ss_pred EEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccc-eEEEEEcCCCcEE
Q psy17863 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV-VNSLCSHPTRKHI 311 (341)
Q Consensus 233 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l 311 (341)
++.|-.+|++++.+++|.+.-+.+.|++......+++|++||.|++||+.+...+..+. .+... |+++.++|.-..+
T Consensus 208 rLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~--~~~~v~v~dl~~hp~~~~f 285 (307)
T KOG0316|consen 208 RLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLS--VVSTVIVTDLSCHPTMDDF 285 (307)
T ss_pred eecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeec--cCCceeEEeeecccCccce
Confidence 99999999999999999999999999999999999999999999999999999999998 56666 8999999999999
Q ss_pred EEeCCCcEEEEEcc
Q psy17863 312 MSACGNNVKLWTAE 325 (341)
Q Consensus 312 ~~~~d~~i~vw~~~ 325 (341)
+++.++.+.+|.-+
T Consensus 286 ~~A~~~~~~~~~~~ 299 (307)
T KOG0316|consen 286 ITATGHGDLFWYQE 299 (307)
T ss_pred eEecCCceeceeeh
Confidence 99988888888644
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=296.27 Aligned_cols=325 Identities=17% Similarity=0.254 Sum_probs=275.6
Q ss_pred CceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec---CcccceeEEEEecCCCEEEEecCCCc
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG---GHAHEVNDATAACDSSQIASGASDKS 78 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~ 78 (341)
||+...+++.|..-|+|+.|+|||+++|+++.||+|.+||-.+++.+..+. +|.+.|.+++|+||++.+++++.|.+
T Consensus 179 PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt 258 (603)
T KOG0318|consen 179 PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT 258 (603)
T ss_pred CeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce
Confidence 788999999999999999999999999999999999999999999999997 89999999999999999999999999
Q ss_pred EEEEECCCCce-------------------------------------------eeeecccCccEEEEEEcCCCcEEEEe
Q psy17863 79 VILWEVTTGQP-------------------------------------------VRRWREHASKVTCVKFNEDSSVVISG 115 (341)
Q Consensus 79 i~iw~~~~~~~-------------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~ 115 (341)
++|||+.++++ +..+.+|...|+++..+|++++|++|
T Consensus 259 ~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sg 338 (603)
T KOG0318|consen 259 IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSG 338 (603)
T ss_pred EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEee
Confidence 99999976542 33345899999999999999999999
Q ss_pred cCCCeEEEEEecCCCCc---------CeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCC
Q psy17863 116 SQDNTVMMWDVKSRSHH---------PIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR 186 (341)
Q Consensus 116 ~~d~~i~iwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (341)
+.||.|.-|+..++... .+..+.....+.+++.+.|.++++.++.............+ .+..+++..+++
T Consensus 339 syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg-~QP~~lav~~d~ 417 (603)
T KOG0318|consen 339 SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLG-SQPKGLAVLSDG 417 (603)
T ss_pred ccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecC-CCceeEEEcCCC
Confidence 99999999999876532 34556666668899999999999998865544333222222 335589999999
Q ss_pred ceEEEeCCCceEEEEcccc----cCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccce--eeeecCcccceeEEEEEe
Q psy17863 187 KHIMSACGNNVKLWTAEED----YGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL--LEEYKGHKSGDFRIECCL 260 (341)
Q Consensus 187 ~~~~~~~~~~i~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~ 260 (341)
..++..+...+.++.-.+. ...-...+++++|++..+++|+.|+.|++|.+...+. ......|.++++.+ ++
T Consensus 418 ~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v--ay 495 (603)
T KOG0318|consen 418 GTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDV--AY 495 (603)
T ss_pred CEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEE--EE
Confidence 8888888888877763332 2445678999999999999999999999999986553 33456799999988 99
Q ss_pred CCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 261 DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 261 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
+||+.+||+|...+.+.+||+.+.+. ..-...-|...|.+++|+|+..++|+|+ |.+|.||++++....
T Consensus 496 Spd~~yla~~Da~rkvv~yd~~s~~~-~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 496 SPDGAYLAAGDASRKVVLYDVASREV-KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred CCCCcEEEEeccCCcEEEEEcccCce-ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence 99999999999999999999988876 3333446999999999999999999999 999999999876543
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-48 Score=293.25 Aligned_cols=282 Identities=18% Similarity=0.279 Sum_probs=243.7
Q ss_pred eeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEe
Q psy17863 47 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126 (341)
Q Consensus 47 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 126 (341)
+...+.+|.++|.|++|+|++..|++|+.|.++++||+.+..+..+.++|...|.|++|+|||+.|++|+.||+|++||.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 33456799999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCC---------cCeEEeecC------CCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEE
Q psy17863 127 KSRSH---------HPIQCCLDS------KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS 191 (341)
Q Consensus 127 ~~~~~---------~~~~~~~~~------~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (341)
++++. ..+..+.+. +..++++++.||.+++||+..+..+..+..+ ...|+++.|--++-....
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH--T~~VTCvrwGG~gliySg 264 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH--TASVTCVRWGGEGLIYSG 264 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC--ccceEEEEEcCCceEEec
Confidence 87652 344444443 3448999999999999999998888777654 456999999877755555
Q ss_pred eCCCceEEEEccccc-------CCCCeEEEEEc-----------cCC-------------------------CEEEEeec
Q psy17863 192 ACGNNVKLWTAEEDY-------GQEPIVDACFT-----------RDC-------------------------QCILTCST 228 (341)
Q Consensus 192 ~~~~~i~~~~~~~~~-------~~~~i~~~~~~-----------~~~-------------------------~~l~~~~~ 228 (341)
..+++|++|+...+. |...|+.++.+ |.+ ..+++|+.
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 557999999988743 66777777666 323 35999999
Q ss_pred CCeEEEEeccc-cceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCC
Q psy17863 229 DECLRLFDKAT-GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 229 d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
|.++.+|+... .+++..+.+|..-|..+ .|+||++++|+++.|..|++|+-++|+.+..++ +|-++|..++|+.|
T Consensus 345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V--~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR--GHv~~VYqvawsaD 420 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRMTGHQALVNHV--SFSPDGRYIASASFDKSVKLWDGRTGKFLASFR--GHVAAVYQVAWSAD 420 (480)
T ss_pred CceEEEecccccccchhhhhchhhheeeE--EECCCccEEEEeecccceeeeeCCCcchhhhhh--hccceeEEEEeccC
Confidence 99999999654 45888999999999888 899999999999999999999999999999999 99999999999999
Q ss_pred CcEEEEeC-CCcEEEEEcccccCCccce
Q psy17863 308 RKHIMSAC-GNNVKLWTAEEDYGQAGLS 334 (341)
Q Consensus 308 ~~~l~~~~-d~~i~vw~~~~~~~~~~~~ 334 (341)
.++|++++ |.++++|++.+......++
T Consensus 421 sRLlVS~SkDsTLKvw~V~tkKl~~DLp 448 (480)
T KOG0271|consen 421 SRLLVSGSKDSTLKVWDVRTKKLKQDLP 448 (480)
T ss_pred ccEEEEcCCCceEEEEEeeeeeecccCC
Confidence 99999999 9999999999876554443
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-46 Score=272.60 Aligned_cols=282 Identities=18% Similarity=0.334 Sum_probs=249.3
Q ss_pred CceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
.++..++|++|.+.|.++.|++|.+++++++.||.+.|||.-+...++.++-....|..++|+|.++++|.|+-|+...|
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 34567899999999999999999999999999999999999998888888888999999999999999999999999999
Q ss_pred EECCCC------ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEE
Q psy17863 82 WEVTTG------QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIY 155 (341)
Q Consensus 82 w~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 155 (341)
|++.+. +..+.+.+|.+.+.|+.|.+|+ .|++++.|.+..+||+++++
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~------------------------- 177 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQ------------------------- 177 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccce-------------------------
Confidence 999855 3456788999999999999855 68888889888888887654
Q ss_pred EEEccCCcceeeeEeeecCceEEEEEECC-CCceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccCCCEEEEe
Q psy17863 156 KWQLVDSSQISTLIHSVGKAVVNSLCSHP-TRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTC 226 (341)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~ 226 (341)
....+. .+...|.++.++| +++.+++++ +...++||++... |+..|+++.|.|+|.-+++|
T Consensus 178 --------~~~~f~--GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatG 247 (343)
T KOG0286|consen 178 --------QTQVFH--GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATG 247 (343)
T ss_pred --------EEEEec--CCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeec
Confidence 333333 3455699999999 888887765 7899999998865 88999999999999999999
Q ss_pred ecCCeEEEEeccccceeeeecCcc--cceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEE
Q psy17863 227 STDECLRLFDKATGELLEEYKGHK--SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS 304 (341)
Q Consensus 227 ~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 304 (341)
+.|++.++||++..+.+..+.... .+++.+ +|+..|++|++|..|..+.+||.-.++.+..+. +|...|+++..
T Consensus 248 SDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv--~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~--GHeNRvScl~~ 323 (343)
T KOG0286|consen 248 SDDATCRLYDLRADQELAVYSHDSIICGITSV--AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA--GHENRVSCLGV 323 (343)
T ss_pred CCCceeEEEeecCCcEEeeeccCcccCCceeE--EEcccccEEEeeecCCceeEeeccccceEEEee--ccCCeeEEEEE
Confidence 999999999999999888887433 345555 899999999999999999999999999999999 99999999999
Q ss_pred cCCCcEEEEeC-CCcEEEEE
Q psy17863 305 HPTRKHIMSAC-GNNVKLWT 323 (341)
Q Consensus 305 ~~~~~~l~~~~-d~~i~vw~ 323 (341)
+|||..+++|+ |..++||.
T Consensus 324 s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 324 SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCCCcEEEecchhHheeecC
Confidence 99999999999 99999994
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=266.64 Aligned_cols=285 Identities=20% Similarity=0.337 Sum_probs=242.2
Q ss_pred eeeeEEeeeCCcEEEEEEccC-CCEEEEEeCCCeEEEEcCC-----CcceeeEecCcccceeEEEEecCCCEEEEecCCC
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVD-GSYCLTCGSDKKIKLWNPY-----RNLLLKTYGGHAHEVNDATAACDSSQIASGASDK 77 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~i~iw~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 77 (341)
.+..+|++|++.|+.++..+. .+.+++++.|.++.+|++. .|..++.+++|+..|..+..++|+++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 456689999999999999886 5688899999999999864 4678899999999999999999999999999999
Q ss_pred cEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 78 SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 78 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
++++||+.+++..+.|.+|...|.+++|++|.+.+++|+.|.+|++|++....
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c--------------------------- 138 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC--------------------------- 138 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE---------------------------
Confidence 99999999999999999999999999999999999999999999999987532
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCC--CceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccCCCEEEEee
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPT--RKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCS 227 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~ 227 (341)
..++....+...|.++.|+|+ ...++.++ |+.+++||+++-. |...++.+++||||...++|+
T Consensus 139 -------k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg 211 (315)
T KOG0279|consen 139 -------KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG 211 (315)
T ss_pred -------EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC
Confidence 111211212567999999999 56666666 6899999998754 778899999999999999999
Q ss_pred cCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeee-------eccceE
Q psy17863 228 TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV-------GKAVVN 300 (341)
Q Consensus 228 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~v~ 300 (341)
.||.+.+||++.++.+..+. |...|..+ +|+|+.-.|+.+ .+..|+|||++++..+..+.... ......
T Consensus 212 kdg~~~LwdL~~~k~lysl~-a~~~v~sl--~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cl 287 (315)
T KOG0279|consen 212 KDGEAMLWDLNEGKNLYSLE-AFDIVNSL--CFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICL 287 (315)
T ss_pred CCceEEEEEccCCceeEecc-CCCeEeeE--EecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEE
Confidence 99999999999999987776 56667777 899987555554 45569999999998887766221 133567
Q ss_pred EEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 301 SLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 301 ~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
+++|++||+.|.++- |+.|++|.+..
T Consensus 288 slaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 288 SLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred EEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 889999999999999 99999998753
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=258.84 Aligned_cols=274 Identities=21% Similarity=0.395 Sum_probs=240.6
Q ss_pred CEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCc--eeeeecccCccEEEE
Q psy17863 26 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ--PVRRWREHASKVTCV 103 (341)
Q Consensus 26 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~ 103 (341)
-+|++++.|.+|++|...+|.+.++++-..+.|+.+...|+++.|++++. ..|++||+++++ ++.++.+|...|+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 47999999999999999999999999977889999999999999999876 559999999875 588999999999999
Q ss_pred EEcCCCcEEEEecCCCeEEEEEecCCCC-------cCe-EEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCc
Q psy17863 104 KFNEDSSVVISGSQDNTVMMWDVKSRSH-------HPI-QCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA 175 (341)
Q Consensus 104 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------~~~-~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~ 175 (341)
.|..+|+.+++|++||+++|||++.... .++ ..+..++...|++|..+|.|++||+.+......+..+. ..
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~-~~ 168 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPED-DT 168 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCC-Cc
Confidence 9999999999999999999999998542 233 34556667799999999999999999987776665543 36
Q ss_pred eEEEEEECCCCceEEEeCC-CceEEEEccccc-------------CCCCeEEEEEccCCCEEEEeecCCeEEEEecccc-
Q psy17863 176 VVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY-------------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATG- 240 (341)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~- 240 (341)
.+.++...|+|..++++.+ |..++|++.... |...+..+.+|||+++|++++.|.+++||+.++.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 7999999999999999886 899999987643 7788999999999999999999999999999887
Q ss_pred ceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEc
Q psy17863 241 ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH 305 (341)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 305 (341)
+....+++|...++.. +||.|++||++|+.|+.+++|++..++.+.... +|..+..+++..
T Consensus 249 kle~~l~gh~rWvWdc--~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~--gh~K~~vc~~ln 309 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDC--AFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ--GHHKAAVCVALN 309 (311)
T ss_pred eeEEEeecCCceEEee--eeccCccEEEecCCCCceeecccccCceeeecC--CcccccEEEEee
Confidence 6667788998877765 999999999999999999999999999999988 787777777653
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-45 Score=297.24 Aligned_cols=324 Identities=20% Similarity=0.317 Sum_probs=271.4
Q ss_pred eeeeEEee-eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCC--EEEEecCCCcEE
Q psy17863 4 TCVQTIDC-KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS--QIASGASDKSVI 80 (341)
Q Consensus 4 ~~~~~l~~-h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~ 80 (341)
++++.++. |++||.-++|+|.+..+++|+.|+.++|||+..+.+...|++|.+.|.++.|+|+-+ .|++|..|++++
T Consensus 95 k~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~ 174 (775)
T KOG0319|consen 95 KLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVR 174 (775)
T ss_pred hHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEE
Confidence 35566777 999999999999999999999999999999999999999999999999999999765 489999999999
Q ss_pred EEECCCCce-eeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC----------------------------
Q psy17863 81 LWEVTTGQP-VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH---------------------------- 131 (341)
Q Consensus 81 iw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---------------------------- 131 (341)
+||+++... +..+..|.+.|++++|.+|+..+++++.|..+.+||+.+.+.
T Consensus 175 vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~ 254 (775)
T KOG0319|consen 175 VWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYII 254 (775)
T ss_pred EEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEE
Confidence 999996654 888899999999999999999999999999999999754210
Q ss_pred -----------------------cC----------------------------------------------e--EEeecC
Q psy17863 132 -----------------------HP----------------------------------------------I--QCCLDS 140 (341)
Q Consensus 132 -----------------------~~----------------------------------------------~--~~~~~~ 140 (341)
.+ + .+...+
T Consensus 255 TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~ 334 (775)
T KOG0319|consen 255 TAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGP 334 (775)
T ss_pred EecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCC
Confidence 00 0 001112
Q ss_pred CCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccc--------------
Q psy17863 141 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED-------------- 205 (341)
Q Consensus 141 ~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~-------------- 205 (341)
.++.+++++..+.+++|+..+..+. ....+...+.++....+|-++++++ |+++++|.++++
T Consensus 335 e~~~laVATNs~~lr~y~~~~~~c~---ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~ 411 (775)
T KOG0319|consen 335 EESHLAVATNSPELRLYTLPTSYCQ---IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHT 411 (775)
T ss_pred ccceEEEEeCCCceEEEecCCCceE---EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccc
Confidence 2336777777777777766665544 2333455677777666666666655 466777755321
Q ss_pred -------------------------------------------------cCCCCeEEEEEccCCCEEEEeecCCeEEEEe
Q psy17863 206 -------------------------------------------------YGQEPIVDACFTRDCQCILTCSTDECLRLFD 236 (341)
Q Consensus 206 -------------------------------------------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 236 (341)
.|...|++++++|+.+++++|+.|.+.++|+
T Consensus 412 ~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~ 491 (775)
T KOG0319|consen 412 NSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWD 491 (775)
T ss_pred cccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeec
Confidence 0667899999999999999999999999999
Q ss_pred ccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-
Q psy17863 237 KATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC- 315 (341)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 315 (341)
+++.+.+.++.+|...++++ .|++..+.+++++.|++|+||.+.+..++.++. +|...|..+.|-.+++.|++++
T Consensus 492 le~~~l~~vLsGH~RGvw~V--~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~e--GH~~aVlra~F~~~~~qliS~~a 567 (775)
T KOG0319|consen 492 LEQLRLLGVLSGHTRGVWCV--SFSKNDQLLATCSGDKTVKIWSISTFSCLKTFE--GHTSAVLRASFIRNGKQLISAGA 567 (775)
T ss_pred ccCceEEEEeeCCccceEEE--EeccccceeEeccCCceEEEEEeccceeeeeec--CccceeEeeeeeeCCcEEEeccC
Confidence 99999999999999999999 899999999999999999999999999999999 9999999999999999999999
Q ss_pred CCcEEEEEcccccCCccce
Q psy17863 316 GNNVKLWTAEEDYGQAGLS 334 (341)
Q Consensus 316 d~~i~vw~~~~~~~~~~~~ 334 (341)
||-|++|++.+......+.
T Consensus 568 dGliKlWnikt~eC~~tlD 586 (775)
T KOG0319|consen 568 DGLIKLWNIKTNECEMTLD 586 (775)
T ss_pred CCcEEEEeccchhhhhhhh
Confidence 9999999999988776654
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=279.32 Aligned_cols=315 Identities=16% Similarity=0.295 Sum_probs=271.7
Q ss_pred CceeeeEEeeeCCcEEEEEEccCCC-EEEEEeCCCeEEEEcCCCc----ceeeEec----------CcccceeEEEEecC
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDGS-YCLTCGSDKKIKLWNPYRN----LLLKTYG----------GHAHEVNDATAACD 66 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~----~~~~~~~----------~~~~~v~~~~~~~~ 66 (341)
|-...+.++ |..+|.+.+|+|-.. .+++|+.|-..++|++... .....++ ..+..|++++|+.+
T Consensus 168 ~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~ 246 (524)
T KOG0273|consen 168 PSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNND 246 (524)
T ss_pred cccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCC
Confidence 334445566 999999999999765 8999999999999998641 1111111 12357999999999
Q ss_pred CCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCe--------EEee
Q psy17863 67 SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPI--------QCCL 138 (341)
Q Consensus 67 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--------~~~~ 138 (341)
|..|++|+.||.+++|+. .|..+.++..|.++|.++.|+..|.+|++++.|+++.+||..++..... .-..
T Consensus 247 G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVd 325 (524)
T KOG0273|consen 247 GTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVD 325 (524)
T ss_pred CCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceE
Confidence 999999999999999995 6888999999999999999999999999999999999999977653222 2234
Q ss_pred cCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccccc-------CCCC
Q psy17863 139 DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY-------GQEP 210 (341)
Q Consensus 139 ~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~-------~~~~ 210 (341)
+..+..+++.+.|+.|+++.+....+..++..+ ...|..+.|+|.+.+|+++++ +++++|...... |...
T Consensus 326 W~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH--~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hske 403 (524)
T KOG0273|consen 326 WQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGH--HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKE 403 (524)
T ss_pred EecCceEeecCCCceEEEEEecCCCcceeeecc--cCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccc
Confidence 455668999999999999999999999999884 456999999999999999986 899999976644 7889
Q ss_pred eEEEEEccCC---------CEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEee
Q psy17863 211 IVDACFTRDC---------QCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 281 (341)
Q Consensus 211 i~~~~~~~~~---------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (341)
|..+.|+|.| ..+++++.|++|++||+..+.+++.|..|..+|+.+ +|+|+|+++|+|+.||.|.+|++
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysv--afS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSV--AFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEE--EecCCCcEEEecCCCCeeEeccc
Confidence 9999999964 468999999999999999999999999999999998 99999999999999999999999
Q ss_pred eCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 282 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 282 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
++++..+... ..+.|..++|+.+|..|..+- |+.+.+-|+.
T Consensus 482 ~~~~l~~s~~---~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 482 KTGKLVKSYQ---GTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cchheeEeec---CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999998886 566799999999999988888 9999998875
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-45 Score=279.39 Aligned_cols=290 Identities=23% Similarity=0.426 Sum_probs=251.8
Q ss_pred CCceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCc---ceeeEecCcccceeEEEEecCCCEEEEecCCC
Q psy17863 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN---LLLKTYGGHAHEVNDATAACDSSQIASGASDK 77 (341)
Q Consensus 1 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 77 (341)
+|.+..+.|..|+++|.-+.||++|+|||+++.|.+..+|++... +..+++.+|..+|.-+.|+||.++|++++.|.
T Consensus 212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE 291 (519)
T ss_pred CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH
Confidence 577888899999999999999999999999999999999986543 45778899999999999999999999999999
Q ss_pred cEEEEECCCCceeeeecc-cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEE
Q psy17863 78 SVILWEVTTGQPVRRWRE-HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYK 156 (341)
Q Consensus 78 ~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 156 (341)
.+.+||+.+|.....+.. +...+.+++|.|||..+++|+.|+++..||+.... +.-
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-----------------------~~~ 348 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-----------------------LGN 348 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-----------------------hhc
Confidence 999999999998887753 46889999999999999999999999999987643 111
Q ss_pred EEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecC
Q psy17863 157 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTD 229 (341)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d 229 (341)
|.-. ....+..++..+||++++..+ +..+++++.+... ...+|+++++|.+++++++.-.+
T Consensus 349 W~gv------------r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~ 416 (519)
T KOG0293|consen 349 WEGV------------RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQD 416 (519)
T ss_pred cccc------------ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEccc
Confidence 2110 113478888889988776655 6788888877643 56899999999999999999999
Q ss_pred CeEEEEeccccceeeeecCcccceeEEEEEeCCC-CCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCC
Q psy17863 230 ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSK-DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR 308 (341)
Q Consensus 230 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 308 (341)
..+++||++..+.+..+.||...-+.++.||... ..++++|++|+.|+||+..+++++..+. +|...|++++|+|..
T Consensus 417 qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls--GHs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 417 QEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS--GHSKTVNCVSWNPAD 494 (519)
T ss_pred CeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec--CCcceeeEEecCCCC
Confidence 9999999999999999999999988888888754 4799999999999999999999999999 999999999999976
Q ss_pred -cEEEEeC-CCcEEEEEcccc
Q psy17863 309 -KHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 309 -~~l~~~~-d~~i~vw~~~~~ 327 (341)
.++|+++ ||+||||.....
T Consensus 495 p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 495 PEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred HHHhhccCCCCeEEEecCCcc
Confidence 4678888 999999998754
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=269.17 Aligned_cols=289 Identities=20% Similarity=0.405 Sum_probs=252.1
Q ss_pred CCceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEE
Q psy17863 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 80 (341)
Q Consensus 1 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 80 (341)
+|+++.+.+.+|.+.|.|+++.|-.++|++|+.|++|+|||+.++++..++.+|-..|..+++++-..||++++.|+.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC---------cCeEEeecCCCceEEEeecc
Q psy17863 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH---------HPIQCCLDSKDSQIFCGSSD 151 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 151 (341)
.||++..+.++.+.+|-+.|.|++.+|.-..|++++.|.++++||+++... ........+.+..+++|+.|
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 999999999999999999999999999999999999999999999998542 22334455667899999999
Q ss_pred CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCe
Q psy17863 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDEC 231 (341)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 231 (341)
++|++||++.++....+..+ ...+.+++.+|....+++++.| .
T Consensus 299 ~tvrlWDl~agkt~~tlt~h------------------------------------kksvral~lhP~e~~fASas~d-n 341 (460)
T KOG0285|consen 299 STVRLWDLRAGKTMITLTHH------------------------------------KKSVRALCLHPKENLFASASPD-N 341 (460)
T ss_pred ceEEEeeeccCceeEeeecc------------------------------------cceeeEEecCCchhhhhccCCc-c
Confidence 99999999998887777653 3456666777777778888777 5
Q ss_pred EEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE------eeeeccceEEEEEc
Q psy17863 232 LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI------HSVGKAVVNSLCSH 305 (341)
Q Consensus 232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~v~~~~~~ 305 (341)
|+-|++..+..+..+.+|..-+..+ +...|+ ++++|+++|.+.+||.+++...+... .......|.+.+|.
T Consensus 342 ik~w~~p~g~f~~nlsgh~~iintl--~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD 418 (460)
T KOG0285|consen 342 IKQWKLPEGEFLQNLSGHNAIINTL--SVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD 418 (460)
T ss_pred ceeccCCccchhhccccccceeeee--eeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence 9999999999999999999988887 666665 89999999999999999987655542 11234678999999
Q ss_pred CCCcEEEEeC-CCcEEEEEcccccC
Q psy17863 306 PTRKHIMSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 306 ~~~~~l~~~~-d~~i~vw~~~~~~~ 329 (341)
..|..|+++. |.+|++|.-++...
T Consensus 419 ktg~rlit~eadKtIk~~keDe~aT 443 (460)
T KOG0285|consen 419 KTGSRLITGEADKTIKMYKEDEHAT 443 (460)
T ss_pred ccCceEEeccCCcceEEEecccccC
Confidence 9999999999 99999998665443
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=260.34 Aligned_cols=280 Identities=25% Similarity=0.411 Sum_probs=237.2
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcC-CCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNP-YRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
++..+.+|.+.|..+.|+|+|.+||+|+.|..|.+|+. ...+-...+++|.+.|..+.|.+|++.+++++.|.+++.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 44567899999999999999999999999999999994 34556677889999999999999999999999999999999
Q ss_pred CCCCceeeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCC--------cCeEEeecCCCceEEEeeccCeE
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSH--------HPIQCCLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~i 154 (341)
.++|+.++.+++|..-|..+.-+. ...++.+++.|+++++||+++... ......+......+++|+-|+.|
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~i 198 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDI 198 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCce
Confidence 999999999999999999988444 445677888999999999995431 11222333445577788888888
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEE
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRL 234 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 234 (341)
++||++.......+.. |..+|+.+..+|+|.++.+-+.|.++++
T Consensus 199 kvWd~r~~d~~~~lsG------------------------------------h~DtIt~lsls~~gs~llsnsMd~tvrv 242 (338)
T KOG0265|consen 199 KVWDLRKNDGLYTLSG------------------------------------HADTITGLSLSRYGSFLLSNSMDNTVRV 242 (338)
T ss_pred eeeccccCcceEEeec------------------------------------ccCceeeEEeccCCCccccccccceEEE
Confidence 8888877665555543 4678999999999999999999999999
Q ss_pred Eecccc----ceeeeecCcc--cceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCC
Q psy17863 235 FDKATG----ELLEEYKGHK--SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR 308 (341)
Q Consensus 235 ~d~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 308 (341)
||++.. +++..+.+|. -....+.++|+|++..+.+|+.|..+++||......+..++ +|.+.|.++.|+|..
T Consensus 243 wd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp--Gh~gsvn~~~Fhp~e 320 (338)
T KOG0265|consen 243 WDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP--GHYGSVNEVDFHPTE 320 (338)
T ss_pred EEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC--CcceeEEEeeecCCC
Confidence 998754 4467777654 45677888999999999999999999999988888999999 999999999999999
Q ss_pred cEEEEeC-CCcEEEE
Q psy17863 309 KHIMSAC-GNNVKLW 322 (341)
Q Consensus 309 ~~l~~~~-d~~i~vw 322 (341)
.+|.+++ |.+|++=
T Consensus 321 ~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 321 PIILSCSSDKTIYLG 335 (338)
T ss_pred cEEEEeccCceeEee
Confidence 9999999 9999863
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=259.89 Aligned_cols=314 Identities=15% Similarity=0.261 Sum_probs=258.7
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEEC
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 84 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 84 (341)
-+.+|..|+++|.+++.+|+.++++||+.|..-.+|+..++.....+.+|...|+++.|+.+|.+||+|..+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------CcCe-EEeecCCCceEEEeeccCeEE
Q psy17863 85 TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPI-QCCLDSKDSQIFCGSSDGKIY 155 (341)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~-~~~~~~~~~~~~~~~~~g~i~ 155 (341)
.++.....+...-..+.=+.|+|.+..|+.|+.||.+.+|.+.+.. ..+. .-.+.+++.+++++..||+|+
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~ 215 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII 215 (399)
T ss_pred ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence 9999888887667788889999999999999999999999998742 1122 223445677999999999999
Q ss_pred EEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEE--------cccc-------cCCCCeEE---EEE
Q psy17863 156 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWT--------AEED-------YGQEPIVD---ACF 216 (341)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~--------~~~~-------~~~~~i~~---~~~ 216 (341)
+|++.++.++..+.... .....++.++..+..++.+.. +.+++.+ ...+ .+...+.+ +.+
T Consensus 216 ~Wn~ktg~p~~~~~~~e-~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ 294 (399)
T KOG0296|consen 216 VWNPKTGQPLHKITQAE-GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS 294 (399)
T ss_pred EEecCCCceeEEecccc-cCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc
Confidence 99999998888776433 334555666666655555542 2222222 1111 12333444 444
Q ss_pred ccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeec
Q psy17863 217 TRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK 296 (341)
Q Consensus 217 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 296 (341)
+..-.+.++|+-||+|.|||+...++.+.+. |..+|..+ .|.+ ..+|++++.+|.|+.||.++|+++..+. +|.
T Consensus 295 ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l--~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~--GH~ 368 (399)
T KOG0296|consen 295 SSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKL--KWLN-TDYLLTACANGKVRQWDARTGQLKFTYT--GHQ 368 (399)
T ss_pred ccccchhhcccccceEEEEecccchhheecc-CCCceEEE--EEcC-cchheeeccCceEEeeeccccceEEEEe--cCc
Confidence 5556778999999999999999877766665 77777777 6767 6799999999999999999999999999 999
Q ss_pred cceEEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 297 AVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 297 ~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
..|.+++++|+.+++++++ |++.+||+++
T Consensus 369 ~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 369 MGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred hheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999 9999999875
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=292.09 Aligned_cols=256 Identities=21% Similarity=0.309 Sum_probs=228.6
Q ss_pred CceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCc-------------------------------ceeeE
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN-------------------------------LLLKT 50 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~-------------------------------~~~~~ 50 (341)
|--|..++..-...++|..|++|+..||.|-.|..|++|.+... ...++
T Consensus 367 pSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 367 PSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred CcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence 44567777777789999999999999999999999999986521 12344
Q ss_pred ecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC
Q psy17863 51 YGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 130 (341)
Q Consensus 51 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 130 (341)
+-+|.++|..+.|+|+.++|+++++|+++++|.+.+..++..+++|..+|+++.|+|.|-++|+++.|++.++|......
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999988866432
Q ss_pred CcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCC
Q psy17863 131 HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEP 210 (341)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 210 (341)
+++.+.. |...
T Consensus 527 ---------------------------------PlRifag------------------------------------hlsD 537 (707)
T KOG0263|consen 527 ---------------------------------PLRIFAG------------------------------------HLSD 537 (707)
T ss_pred ---------------------------------chhhhcc------------------------------------cccc
Confidence 2222221 3566
Q ss_pred eEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEE
Q psy17863 211 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 290 (341)
Q Consensus 211 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 290 (341)
+.|+.|+|+..++++|+.|.++|+||..+|..++.|.||.++|.++ +++|+|++|++|+.||.|.+||+.+++++..+
T Consensus 538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al--~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l 615 (707)
T KOG0263|consen 538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTAL--AFSPCGRYLASGDEDGLIKIWDLANGSLVKQL 615 (707)
T ss_pred cceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEE--EEcCCCceEeecccCCcEEEEEcCCCcchhhh
Confidence 8899999999999999999999999999999999999999999988 89999999999999999999999999999999
Q ss_pred EeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 291 IHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 291 ~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
. +|.+.|.++.|+.||..||+++ |.+|++||+......
T Consensus 616 ~--~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 616 K--GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred h--cccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 9 8999999999999999999999 999999999875544
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=264.66 Aligned_cols=282 Identities=21% Similarity=0.323 Sum_probs=251.9
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
.+.+.+.+|..+|+.+-|+|+-..+++++.|++|++||..+++....+++|...+..++|+..|+++++++.|=.+.+||
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 56678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 84 VTT-GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 84 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
.++ -++++.+.+|...|.+++|-|.|.++++++.|.+|+.|++.++-
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~-------------------------------- 226 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY-------------------------------- 226 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce--------------------------------
Confidence 987 56788888999999999999999999999999999998887654
Q ss_pred cceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccccc-------CCCCeEEEEEccC---------------
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY-------GQEPIVDACFTRD--------------- 219 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~-------~~~~i~~~~~~~~--------------- 219 (341)
++.++.. +...+..+..+.||..+++++. ..+++|-+.+.. |+-++.+++|.|.
T Consensus 227 -cv~t~~~--h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~ 303 (406)
T KOG0295|consen 227 -CVKTFPG--HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNG 303 (406)
T ss_pred -eEEeccC--chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCC
Confidence 2222322 2335778888888888888774 788888877762 7788888888762
Q ss_pred CCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccce
Q psy17863 220 CQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVV 299 (341)
Q Consensus 220 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 299 (341)
+.++.+++.|++|++||+.++.++.++.+|.+.|..+ +|+|.|+||+++.+|+++++||++++++...+. .|..-+
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~--af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~--ah~hfv 379 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGV--AFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE--AHEHFV 379 (406)
T ss_pred ccEEEeecccceEEEEeccCCeEEEEEecccceeeee--EEcCCCeEEEEEecCCcEEEEEeccceeeeccC--CCccee
Confidence 3589999999999999999999999999999999988 999999999999999999999999999999999 899999
Q ss_pred EEEEEcCCCcEEEEeC-CCcEEEEEc
Q psy17863 300 NSLCSHPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 300 ~~~~~~~~~~~l~~~~-d~~i~vw~~ 324 (341)
+++.|+.+..++++|+ |..+++|.-
T Consensus 380 t~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 380 TSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999 999999963
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=279.99 Aligned_cols=285 Identities=20% Similarity=0.396 Sum_probs=248.9
Q ss_pred CCceeeeEEeeeCCcEEEEEEcc-CCCEEEEEeCCCeEEEEcCCC-cceeeEecCcccceeEEEEecCCCEEEEecCCCc
Q psy17863 1 MEYTCVQTIDCKQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYR-NLLLKTYGGHAHEVNDATAACDSSQIASGASDKS 78 (341)
Q Consensus 1 ~~~~~~~~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 78 (341)
||-+.++++.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|..++|+++|..+++++.|+.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 57788999999999999999999 899999999999999999876 8999999999999999999999999999999999
Q ss_pred EEEEECCCCceeeeecccCccEEEEEEcCCC-cEEEEecCCCeEEEEEecCCCC--------cC-eEEeecCCCceEEEe
Q psy17863 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSH--------HP-IQCCLDSKDSQIFCG 148 (341)
Q Consensus 79 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~--------~~-~~~~~~~~~~~~~~~ 148 (341)
+++||+++|+++..+. ....++|+.|+|++ +.+++|+.|+.|+.||+++++. .. ....+...+.++++.
T Consensus 282 lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999999999999987 45678999999987 8999999999999999999762 22 334455667789999
Q ss_pred eccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeec
Q psy17863 149 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCST 228 (341)
Q Consensus 149 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 228 (341)
+.|+.+++|+.+.+-.+...... ..-...++..+|+++++++-+.
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~-----------------------------------~~hsmP~~~~~P~~~~~~aQs~ 405 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADP-----------------------------------EMHTMPCLTLHPNGKWFAAQSM 405 (503)
T ss_pred ccCccEEEEEcCCCccchhhcch-----------------------------------hhccCcceecCCCCCeehhhcc
Confidence 99999999998876655444322 1234567888899999999999
Q ss_pred CCeEEEEecccc---ceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEc
Q psy17863 229 DECLRLFDKATG---ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH 305 (341)
Q Consensus 229 d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 305 (341)
|+.|.+|.+... ...+.+++|..+-+.+.+.|||||++|++|+.||.+.+||.++.+.+..+. .|..++..+.|+
T Consensus 406 dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk--ah~~~ci~v~wH 483 (503)
T KOG0282|consen 406 DNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK--AHDQPCIGVDWH 483 (503)
T ss_pred CceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc--cCCcceEEEEec
Confidence 999999986532 335678999999999999999999999999999999999999999999999 899999999999
Q ss_pred CCC-cEEEEeC-CCcEEEEE
Q psy17863 306 PTR-KHIMSAC-GNNVKLWT 323 (341)
Q Consensus 306 ~~~-~~l~~~~-d~~i~vw~ 323 (341)
|.. ..+|+++ ||.|++|+
T Consensus 484 P~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 484 PVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCcceeEecccCceeEecC
Confidence 975 5788888 99999996
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=275.68 Aligned_cols=239 Identities=20% Similarity=0.318 Sum_probs=214.5
Q ss_pred eeeeEEeeeCCcEEEEEEccC--CCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVD--GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~--~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
+.+++|.+|+..|.++.|+|. +..+|||+.||++++|++.+..++..+.+|...|..++|+|+|++|++++.|.+-++
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl 287 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL 287 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh
Confidence 578899999999999999996 668999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------cCeE-EeecCCCceEEEeeccC
Q psy17863 82 WEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HPIQ-CCLDSKDSQIFCGSSDG 152 (341)
Q Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~-~~~~~~~~~~~~~~~~g 152 (341)
||+++++.+...++|...|.+++|.+||.++++|+.|..-++||++++.. .++. ..+.+++-.+++|+.|+
T Consensus 288 WD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn 367 (459)
T KOG0272|consen 288 WDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDN 367 (459)
T ss_pred cccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCC
Confidence 99999999998999999999999999999999999999999999999763 2333 34445555788888888
Q ss_pred eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEcc-CCCEEEEeecCCe
Q psy17863 153 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTR-DCQCILTCSTDEC 231 (341)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~ 231 (341)
++++||++..+.+..+.. |..-|+.+.|+| .|.+|++++.|++
T Consensus 368 t~kVWDLR~r~~ly~ipA------------------------------------H~nlVS~Vk~~p~~g~fL~TasyD~t 411 (459)
T KOG0272|consen 368 TCKVWDLRMRSELYTIPA------------------------------------HSNLVSQVKYSPQEGYFLVTASYDNT 411 (459)
T ss_pred cEEEeeecccccceeccc------------------------------------ccchhhheEecccCCeEEEEcccCcc
Confidence 888888888777555543 345577888887 6889999999999
Q ss_pred EEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEe
Q psy17863 232 LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 280 (341)
Q Consensus 232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (341)
+++|...++.+++.+.||.+.|.++ .+++++.++++++.|.++++|.
T Consensus 412 ~kiWs~~~~~~~ksLaGHe~kV~s~--Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 412 VKIWSTRTWSPLKSLAGHEGKVISL--DISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eeeecCCCcccchhhcCCccceEEE--EeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999888 8999999999999999999995
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=283.81 Aligned_cols=320 Identities=19% Similarity=0.327 Sum_probs=270.9
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCC--EEEEEeCCCeEEEEcCCCcc-eeeEecCcccceeEEEEecCCCEEEEecCCCcE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGS--YCLTCGSDKKIKLWNPYRNL-LLKTYGGHAHEVNDATAACDSSQIASGASDKSV 79 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~--~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 79 (341)
..+.+.|+||.+.|.++.|+|+-. .|++|..|+.+++||+.+.. ++..+..|...|++++|.+|+..+++++.|..+
T Consensus 137 ~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi 216 (775)
T KOG0319|consen 137 GYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVI 216 (775)
T ss_pred CEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEE
Confidence 358899999999999999999754 58899999999999998654 478888999999999999999999999999999
Q ss_pred EEEECCCCc-----------------------------------------------------------------------
Q psy17863 80 ILWEVTTGQ----------------------------------------------------------------------- 88 (341)
Q Consensus 80 ~iw~~~~~~----------------------------------------------------------------------- 88 (341)
.+||+.+.+
T Consensus 217 ~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~ 296 (775)
T KOG0319|consen 217 IVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQL 296 (775)
T ss_pred EEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCce
Confidence 999975211
Q ss_pred ------------------------------------------------------------eeeeecccCccEEEEEEcCC
Q psy17863 89 ------------------------------------------------------------PVRRWREHASKVTCVKFNED 108 (341)
Q Consensus 89 ------------------------------------------------------------~~~~~~~~~~~v~~~~~~~~ 108 (341)
.-..+.+|...|.++....+
T Consensus 297 l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~ 376 (775)
T KOG0319|consen 297 LLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSS 376 (775)
T ss_pred EEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeeccc
Confidence 01123478888999986667
Q ss_pred CcEEEEecCCCeEEEEEecCCCC------------cCeEEe--ecCCCceEEEeeccCeEEEEEccCCcceee---e---
Q psy17863 109 SSVVISGSQDNTVMMWDVKSRSH------------HPIQCC--LDSKDSQIFCGSSDGKIYKWQLVDSSQIST---L--- 168 (341)
Q Consensus 109 ~~~l~~~~~d~~i~iwd~~~~~~------------~~~~~~--~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~---~--- 168 (341)
|.+|++++.|.++++|.++++.. ..+... .......+++++.|+++++|++...+.... +
T Consensus 377 g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~ 456 (775)
T KOG0319|consen 377 GDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCR 456 (775)
T ss_pred CcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhh
Confidence 78999999999999999854331 122222 223345899999999999999987332221 1
Q ss_pred -EeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccc
Q psy17863 169 -IHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKAT 239 (341)
Q Consensus 169 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 239 (341)
....+...|++++++|+.+++++++ |.+.++|+++... |...+.++.|+|..+.+++++.|.+|+||.+.+
T Consensus 457 ~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~ 536 (775)
T KOG0319|consen 457 YTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST 536 (775)
T ss_pred HHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc
Confidence 2233556799999999999999998 5899999999643 889999999999999999999999999999999
Q ss_pred cceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCc
Q psy17863 240 GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNN 318 (341)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~ 318 (341)
+.++++|.||...|... .|-.++..|++++.||-+++|++++++++.++. .|.+.|.+++-+|...++++|+ ||.
T Consensus 537 fSClkT~eGH~~aVlra--~F~~~~~qliS~~adGliKlWnikt~eC~~tlD--~H~DrvWaL~~~~~~~~~~tgg~Dg~ 612 (775)
T KOG0319|consen 537 FSCLKTFEGHTSAVLRA--SFIRNGKQLISAGADGLIKLWNIKTNECEMTLD--AHNDRVWALSVSPLLDMFVTGGGDGR 612 (775)
T ss_pred ceeeeeecCccceeEee--eeeeCCcEEEeccCCCcEEEEeccchhhhhhhh--hccceeEEEeecCccceeEecCCCeE
Confidence 99999999999988766 788999999999999999999999999999999 9999999999999999999999 999
Q ss_pred EEEEEccc
Q psy17863 319 VKLWTAEE 326 (341)
Q Consensus 319 i~vw~~~~ 326 (341)
|.+|.=.+
T Consensus 613 i~~wkD~T 620 (775)
T KOG0319|consen 613 IIFWKDVT 620 (775)
T ss_pred EEEeecCc
Confidence 99997444
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=270.36 Aligned_cols=279 Identities=30% Similarity=0.519 Sum_probs=246.7
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECC
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 85 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 85 (341)
++++++|.++|++++|+|++++|++++.||.+++|+..+++....+..|...+..+.|+|+++++++++.||.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 46788999999999999999999999999999999999888888889999999999999999999999999999999999
Q ss_pred CCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcce
Q psy17863 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
+++.+..+..|...+.++.|+++++++++++.++.+.+||+++.+ ..
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------------------~~ 128 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK---------------------------------CL 128 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE---------------------------------EE
Confidence 988888888899999999999998888888889999999987432 11
Q ss_pred eeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEec
Q psy17863 166 STLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDK 237 (341)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 237 (341)
..+. .+...+.++.++|++.+++++. ++.+++|++.... +...+.++.|+|+++.+++++.++.+++||+
T Consensus 129 ~~~~--~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 206 (289)
T cd00200 129 TTLR--GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206 (289)
T ss_pred EEec--cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEEC
Confidence 1111 1334688999999988888888 7999999987533 5568999999999999999999999999999
Q ss_pred cccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-C
Q psy17863 238 ATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G 316 (341)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d 316 (341)
+.++.+..+..|...+..+ ++++++.++++++.||.|++|++.+++....+. .|...|.+++|+|++++|++++ |
T Consensus 207 ~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d 282 (289)
T cd00200 207 STGKCLGTLRGHENGVNSV--AFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS--GHTNSVTSLAWSPDGKRLASGSAD 282 (289)
T ss_pred CCCceecchhhcCCceEEE--EEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc--ccCCcEEEEEECCCCCEEEEecCC
Confidence 9999988888888888877 888998888888889999999999988888888 7888999999999999999999 9
Q ss_pred CcEEEEE
Q psy17863 317 NNVKLWT 323 (341)
Q Consensus 317 ~~i~vw~ 323 (341)
+.+++|+
T Consensus 283 ~~i~iw~ 289 (289)
T cd00200 283 GTIRIWD 289 (289)
T ss_pred CeEEecC
Confidence 9999996
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=241.93 Aligned_cols=281 Identities=21% Similarity=0.373 Sum_probs=227.3
Q ss_pred eeeeEEeeeCCcEEEEEEccC-CCEEEEEeCCCeEEEEcCCC---cceeeEe-cCcccceeEEEEecCCCEEEEecCCCc
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVD-GSYCLTCGSDKKIKLWNPYR---NLLLKTY-GGHAHEVNDATAACDSSQIASGASDKS 78 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~i~iw~~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~ 78 (341)
..++.+++|+++|..++|+|- |..||+++.|+.|++|+... -.+...+ .+|+..|.+++|+|.|++|++++.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 467899999999999999998 88999999999999999874 2333334 479999999999999999999999999
Q ss_pred EEEEECCCC--ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEE
Q psy17863 79 VILWEVTTG--QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYK 156 (341)
Q Consensus 79 i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 156 (341)
+.||.-..+ +++..+++|...|.+++|+++|++||+++.|..|-||.+.....
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE------------------------- 139 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE------------------------- 139 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc-------------------------
Confidence 999987655 67889999999999999999999999999999999999875431
Q ss_pred EEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccc-c---------cCCCCeEEEEEccCCCEEEE
Q psy17863 157 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE-D---------YGQEPIVDACFTRDCQCILT 225 (341)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~-~---------~~~~~i~~~~~~~~~~~l~~ 225 (341)
.+....+.. +...|..+.|+|...+|++++ +++|++|+... + .+...+.+++|+|.|..|++
T Consensus 140 -----fec~aVL~~--HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s 212 (312)
T KOG0645|consen 140 -----FECIAVLQE--HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVS 212 (312)
T ss_pred -----EEEEeeecc--ccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEE
Confidence 111122222 344588899999988888876 69999998873 2 26679999999999999999
Q ss_pred eecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCC------ceEEEEeeeeccce
Q psy17863 226 CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS------QISTLIHSVGKAVV 299 (341)
Q Consensus 226 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v 299 (341)
++.|++++||...+.- -..|..+++.+ .+. ...|++++.|+.|++|.-...- .+... ...|...|
T Consensus 213 ~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v--~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dV 283 (312)
T KOG0645|consen 213 CSDDGTVSIWRLYTDL----SGMHSRALYDV--PWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDV 283 (312)
T ss_pred ecCCcceEeeeeccCc----chhcccceEee--eec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hccccccc
Confidence 9999999999865221 12366677777 444 4489999999999999865431 11111 23688899
Q ss_pred EEEEEcCC-CcEEEEeC-CCcEEEEEcc
Q psy17863 300 NSLCSHPT-RKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 300 ~~~~~~~~-~~~l~~~~-d~~i~vw~~~ 325 (341)
++++|.|. ...|++++ ||.|++|.+.
T Consensus 284 NsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 284 NSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ceEEEcCCCCCceeecCCCceEEEEEec
Confidence 99999995 67899999 9999999875
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=267.67 Aligned_cols=274 Identities=21% Similarity=0.349 Sum_probs=230.0
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeee
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 92 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 92 (341)
..+|..+.|.|+|+.|++|+..|...+|+.........++.|..+|.++.|++++.++++|+.+|.|++|+..- ..+..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKI 174 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHH
Confidence 45899999999999999999999999999765555555678999999999999999999999999999999754 44444
Q ss_pred ecc-cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCc--------CeEEeec-CCCceEEEeeccCeEEEEEccCC
Q psy17863 93 WRE-HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH--------PIQCCLD-SKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 93 ~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--------~~~~~~~-~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
+.. |...|++++|+|+...+++++.||+|+|||....+.. .+.++.+ +..+.+++++.|..|++||.+++
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg 254 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG 254 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCc
Confidence 554 4599999999999999999999999999998876532 2233333 34457777777777778887777
Q ss_pred cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccce
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL 242 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 242 (341)
.++..+.. |...|..+.|+|++++|++++.|..++++|+++.+.
T Consensus 255 ~cl~tlh~------------------------------------HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE 298 (464)
T KOG0284|consen 255 SCLATLHG------------------------------------HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE 298 (464)
T ss_pred chhhhhhh------------------------------------ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH
Confidence 77666543 356688899999999999999999999999999999
Q ss_pred eeeecCcccceeEEEEEeCCC-CCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEE
Q psy17863 243 LEEYKGHKSGDFRIECCLDSK-DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVK 320 (341)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~ 320 (341)
+..+++|...+.++ .|+|- ..+|.+|+.||.|..|.+...+++..+.. +|...|.+++|+|-|.+|++|+ |.+++
T Consensus 299 l~~~r~Hkkdv~~~--~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~r 375 (464)
T KOG0284|consen 299 LFTYRGHKKDVTSL--TWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVR 375 (464)
T ss_pred HHHhhcchhhheee--ccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCccee
Confidence 99999999999988 67763 45788999999999999986677666665 8999999999999999999999 99999
Q ss_pred EEEccc
Q psy17863 321 LWTAEE 326 (341)
Q Consensus 321 vw~~~~ 326 (341)
+|.-..
T Consensus 376 fw~r~r 381 (464)
T KOG0284|consen 376 FWTRNR 381 (464)
T ss_pred eeccCC
Confidence 997653
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=269.89 Aligned_cols=322 Identities=17% Similarity=0.272 Sum_probs=258.3
Q ss_pred CceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcce--eeEecCcccceeEEEEecCCCEEEEecCCCcE
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLL--LKTYGGHAHEVNDATAACDSSQIASGASDKSV 79 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 79 (341)
||.+.+++.+|-..|+++.|+.|.++|++|+.|-++++|.+...+- ...+.+|...|...-|..+...+++.+.||.+
T Consensus 134 pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l 213 (893)
T KOG0291|consen 134 PFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGAL 213 (893)
T ss_pred cceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceE
Confidence 6888899999999999999999999999999999999999877665 56678999999999999999999999999999
Q ss_pred EEEECCC-----------------------Cce-----e------eeecccCccEEEEEEcC------------------
Q psy17863 80 ILWEVTT-----------------------GQP-----V------RRWREHASKVTCVKFNE------------------ 107 (341)
Q Consensus 80 ~iw~~~~-----------------------~~~-----~------~~~~~~~~~v~~~~~~~------------------ 107 (341)
.+|.... ++. . .-+......|++.+|++
T Consensus 214 ~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~Lye 293 (893)
T KOG0291|consen 214 FVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYE 293 (893)
T ss_pred EEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEe
Confidence 9998751 110 0 00011113344444444
Q ss_pred ------------------------CCcEEEEecCC-CeEEEEEecCCC--------CcCeEEee-cCCCceEEEeeccCe
Q psy17863 108 ------------------------DSSVVISGSQD-NTVMMWDVKSRS--------HHPIQCCL-DSKDSQIFCGSSDGK 153 (341)
Q Consensus 108 ------------------------~~~~l~~~~~d-~~i~iwd~~~~~--------~~~~~~~~-~~~~~~~~~~~~~g~ 153 (341)
.|..|+.|+.. |.+.+|+..... ...+.++. .+++..+++|++||+
T Consensus 294 lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK 373 (893)
T KOG0291|consen 294 LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK 373 (893)
T ss_pred cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCc
Confidence 44455544432 455555554422 23344444 445568999999999
Q ss_pred EEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc--------CCCCeEEEEEccCCCEEE
Q psy17863 154 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY--------GQEPIVDACFTRDCQCIL 224 (341)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~--------~~~~i~~~~~~~~~~~l~ 224 (341)
|++||...+-+..++..+ ...++.+.|+..++.+++.+ ||+++.||+.... .+....+++..|.|..++
T Consensus 374 VKvWn~~SgfC~vTFteH--ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~ 451 (893)
T KOG0291|consen 374 VKVWNTQSGFCFVTFTEH--TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVC 451 (893)
T ss_pred EEEEeccCceEEEEeccC--CCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEE
Confidence 999999999998888764 45699999999999998887 7999999998643 345567888999999999
Q ss_pred EeecCCe-EEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCC-ceEEEEeeeeccceEEE
Q psy17863 225 TCSTDEC-LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS-QISTLIHSVGKAVVNSL 302 (341)
Q Consensus 225 ~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~ 302 (341)
+|+.|.. |.+|++++|+.+..+.||.++|..+ +|+|.+..|++++.|.+|++||+-... .+.+++ +...+..+
T Consensus 452 AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l--~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~---i~sdvl~v 526 (893)
T KOG0291|consen 452 AGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGL--SFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE---IRSDVLAV 526 (893)
T ss_pred eeccceEEEEEEEeecCeeeehhcCCCCcceee--EEccccCeEEeccccceEEEEEeeccCceeeeEe---eccceeEE
Confidence 9999874 9999999999999999999999998 899999999999999999999987653 344454 67789999
Q ss_pred EEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 303 CSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 303 ~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
+|+|+|+.||+++ ||.|.+||.......
T Consensus 527 sfrPdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 527 SFRPDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred EEcCCCCeEEEEEecceEEEEEhhhceee
Confidence 9999999999999 999999999876554
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=240.32 Aligned_cols=258 Identities=17% Similarity=0.287 Sum_probs=221.0
Q ss_pred CEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecC-------
Q psy17863 68 SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDS------- 140 (341)
Q Consensus 68 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~------- 140 (341)
-+|++++.|.+|++|...+|.+.++++...+.|..+...|+++.|++++. ..|++||+++....++.....+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 47899999999999999999999999988899999999999999998874 6899999999887666555444
Q ss_pred ----CCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccccc--------C
Q psy17863 141 ----KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY--------G 207 (341)
Q Consensus 141 ----~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~--------~ 207 (341)
.+..+++|++||++++||++.....+.+. ..++|+++..+|+...|+++.. +.|++||+.++. .
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~---~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~ 166 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ---HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPED 166 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhcc---CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCC
Confidence 34478999999999999999966655554 3478999999999888888775 999999998864 4
Q ss_pred CCCeEEEEEccCCCEEEEeecCCeEEEEecccc------ceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEee
Q psy17863 208 QEPIVDACFTRDCQCILTCSTDECLRLFDKATG------ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 281 (341)
Q Consensus 208 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (341)
..+|.++...|||.+++.+...|..++|++-+. +++.+++.|..-+. +|.+||++++||+++.|.+++||+.
T Consensus 167 ~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il--~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 167 DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL--RCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEE--EEEECCCCcEEEeecCCceEEEEec
Confidence 578999999999999999999999999997654 45677888887655 4589999999999999999999999
Q ss_pred eCC-CceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCccc
Q psy17863 282 VDS-SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQAGL 333 (341)
Q Consensus 282 ~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~~~ 333 (341)
++. +....+. +|...+...+||.||+||++++ |+.+++|+++.+...+..
T Consensus 245 ~~~~kle~~l~--gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 245 DDFFKLELVLT--GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred CCceeeEEEee--cCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec
Confidence 887 4444455 8999999999999999999999 999999999987755443
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=267.77 Aligned_cols=310 Identities=19% Similarity=0.339 Sum_probs=262.0
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCc--------ceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN--------LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
.+.+|.|+.|||||+++|.|. .+.+.||..... .+.+++.+|...|+++.|+.|.++|++|+.|-++++|.
T Consensus 95 fk~~v~~i~fSPng~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~ 173 (893)
T KOG0291|consen 95 FKRGVGAIKFSPNGKFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFG 173 (893)
T ss_pred ecCccceEEECCCCcEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEE
Confidence 458899999999999998877 568999985432 24456778999999999999999999999999999999
Q ss_pred CCCCce--eeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC-------------------------------
Q psy17863 84 VTTGQP--VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS------------------------------- 130 (341)
Q Consensus 84 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------------------------------- 130 (341)
++..+. ...+.+|.+.|....|..+...+++.+.||.+.+|......
T Consensus 174 v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~ 253 (893)
T KOG0291|consen 174 VDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFW 253 (893)
T ss_pred eccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEE
Confidence 987666 56778999999999999999999999999999999876110
Q ss_pred -----------CcCeEEeecCC-CceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC--Cc
Q psy17863 131 -----------HHPIQCCLDSK-DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG--NN 196 (341)
Q Consensus 131 -----------~~~~~~~~~~~-~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 196 (341)
...+.++.+++ ...+++|-..|...+|++.....+..+... ...|..++++..|.+++.++. +.
T Consensus 254 ~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis--~~~I~t~~~N~tGDWiA~g~~klgQ 331 (893)
T KOG0291|consen 254 YKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSIS--DQKILTVSFNSTGDWIAFGCSKLGQ 331 (893)
T ss_pred EEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecc--cceeeEEEecccCCEEEEcCCccce
Confidence 01222333333 347888889999999999998888777654 345999999999999999997 59
Q ss_pred eEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEE
Q psy17863 197 VKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFC 269 (341)
Q Consensus 197 i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 269 (341)
+.+|+...+. |...+++++++|||+++++|+.||.|++||...+-+..+|..|++.++.+ .|+..++.+++
T Consensus 332 LlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v--~f~~~g~~lls 409 (893)
T KOG0291|consen 332 LLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAV--QFTARGNVLLS 409 (893)
T ss_pred EEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEE--EEEecCCEEEE
Confidence 9999977643 78899999999999999999999999999999999999999999999988 78888889999
Q ss_pred ecCCCcEEEEeeeC--------------------------------------------CCceEEEEeeeeccceEEEEEc
Q psy17863 270 GSSDGKIYKWQLVD--------------------------------------------SSQISTLIHSVGKAVVNSLCSH 305 (341)
Q Consensus 270 ~~~dg~i~iwd~~~--------------------------------------------~~~~~~~~~~~~~~~v~~~~~~ 305 (341)
.+-||+|+.||+.. |+.+..+. +|.+||.+++|+
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs--GHEgPVs~l~f~ 487 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS--GHEGPVSGLSFS 487 (893)
T ss_pred eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc--CCCCcceeeEEc
Confidence 99999999888743 33334444 799999999999
Q ss_pred CCCcEEEEeC-CCcEEEEEccccc
Q psy17863 306 PTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 306 ~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
|++..|++++ |.+|++|++-...
T Consensus 488 ~~~~~LaS~SWDkTVRiW~if~s~ 511 (893)
T KOG0291|consen 488 PDGSLLASGSWDKTVRIWDIFSSS 511 (893)
T ss_pred cccCeEEeccccceEEEEEeeccC
Confidence 9999999999 9999999987653
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=279.37 Aligned_cols=285 Identities=29% Similarity=0.511 Sum_probs=245.6
Q ss_pred eeeEEeee-CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc--eeeEecCcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 5 CVQTIDCK-QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL--LLKTYGGHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 5 ~~~~l~~h-~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
..+.+.+| ...|.++.|+++|+.+++++.++.+++|+..+.+ ....+.+|...|.+++|+|+++++++++.|++|++
T Consensus 150 ~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 150 LEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence 35556555 7899999999999999999999999999997777 77778899999999999999999999999999999
Q ss_pred EEC-CCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------CcCeE-EeecCCCceEEEeecc
Q psy17863 82 WEV-TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQ-CCLDSKDSQIFCGSSD 151 (341)
Q Consensus 82 w~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~-~~~~~~~~~~~~~~~~ 151 (341)
||+ ..+..++++++|...|++++|+|+++++++|+.|++|++||+++++ ...+. +.+..++..+++++.|
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 999 5568899999999999999999999999999999999999999854 23344 3445566688889999
Q ss_pred CeEEEEEccCCcce--eeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecC
Q psy17863 152 GKIYKWQLVDSSQI--STLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTD 229 (341)
Q Consensus 152 g~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 229 (341)
+.+++||+.++... ..+..... .. +++++.|+|++++++++..|
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~---------------------------------~~-~~~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAEN---------------------------------SA-PVTSVQFSPNGKYLLSASLD 355 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCC---------------------------------CC-ceeEEEECCCCcEEEEecCC
Confidence 99999999987743 22222111 12 68999999999999999999
Q ss_pred CeEEEEeccccceeeeecCcccceeEE-EEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeee-ccceEEEEEcCC
Q psy17863 230 ECLRLFDKATGELLEEYKGHKSGDFRI-ECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG-KAVVNSLCSHPT 307 (341)
Q Consensus 230 ~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~ 307 (341)
+.+++||+..+..+..+.+|...+.++ ....++.+.++++|+.|+.|++|++.++..+..+. +| ...+..+.++|.
T Consensus 356 ~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~--~h~~~~~~~~~~~~~ 433 (456)
T KOG0266|consen 356 RTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE--GHSKAAVSDLSSHPT 433 (456)
T ss_pred CeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc--CCCCCceeccccCCC
Confidence 999999999999999999998864333 33457899999999999999999999999999998 78 899999999999
Q ss_pred CcEEEEeC---CCcEEEEEcc
Q psy17863 308 RKHIMSAC---GNNVKLWTAE 325 (341)
Q Consensus 308 ~~~l~~~~---d~~i~vw~~~ 325 (341)
..++++++ |+.+++|..+
T Consensus 434 ~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 434 ENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCeeeecCcCCCceEEEecCC
Confidence 99999997 7889999864
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=251.67 Aligned_cols=321 Identities=18% Similarity=0.251 Sum_probs=263.4
Q ss_pred eeeEEeeeCCcEEEEEEccCCC-EEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
-+.++.||...|++++|-|... +++||+.|++|.+|+-.-.+...+++.|..-|.|+.|+|||.++++++.||++.+||
T Consensus 139 SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyD 218 (603)
T KOG0318|consen 139 SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYD 218 (603)
T ss_pred ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEc
Confidence 3557899999999999999765 689999999999999777777788899999999999999999999999999999999
Q ss_pred CCCCceeeeec---ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCe-----------EEeecCCCceEEEee
Q psy17863 84 VTTGQPVRRWR---EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPI-----------QCCLDSKDSQIFCGS 149 (341)
Q Consensus 84 ~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-----------~~~~~~~~~~~~~~~ 149 (341)
-.+++.+..+. +|.+.|.+++|+||++.+++++.|.+++|||+.+.+.... .-+.+. .+.|++.+
T Consensus 219 Gktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd~lItVS 297 (603)
T KOG0318|consen 219 GKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KDHLITVS 297 (603)
T ss_pred CCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-CCeEEEEE
Confidence 99999999887 8999999999999999999999999999999988752111 112222 66899999
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc--------CCCCeEEEEEccCC
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY--------GQEPIVDACFTRDC 220 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~--------~~~~i~~~~~~~~~ 220 (341)
.+|.|.+++......+..+.. +...|+++..+|+++++++++ +|.|.-|+..... |...|.+++.+..+
T Consensus 298 l~G~in~ln~~d~~~~~~i~G--HnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~ 375 (603)
T KOG0318|consen 298 LSGTINYLNPSDPSVLKVISG--HNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG 375 (603)
T ss_pred cCcEEEEecccCCChhheecc--cccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC
Confidence 999999999999986666655 455699999999999999987 6999999987644 67788888888766
Q ss_pred CEEEEeecCCeEEEEeccccce--------------e-----------------eeecCcccc------eeEEEEEeCCC
Q psy17863 221 QCILTCSTDECLRLFDKATGEL--------------L-----------------EEYKGHKSG------DFRIECCLDSK 263 (341)
Q Consensus 221 ~~l~~~~~d~~i~i~d~~~~~~--------------~-----------------~~~~~~~~~------~~~~~~~~~~~ 263 (341)
. +++.+.|.++++.++..... + ..++.+... -..-+.+++|+
T Consensus 376 ~-~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~ 454 (603)
T KOG0318|consen 376 E-LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPD 454 (603)
T ss_pred c-EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCC
Confidence 6 67778888999997642110 0 001111100 00112488999
Q ss_pred CCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccC
Q psy17863 264 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 264 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~ 329 (341)
+..++.|+.||.|+||.+...+.........|.++|+++++|||+.+||++. .+.+.+|++.+.+.
T Consensus 455 ~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 455 GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce
Confidence 9999999999999999998766544433337999999999999999999999 99999999988764
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=236.93 Aligned_cols=248 Identities=25% Similarity=0.415 Sum_probs=216.6
Q ss_pred ceeeEecCcccceeEEEEecC-CCEEEEecCCCcEEEEECCC-----CceeeeecccCccEEEEEEcCCCcEEEEecCCC
Q psy17863 46 LLLKTYGGHAHEVNDATAACD-SSQIASGASDKSVILWEVTT-----GQPVRRWREHASKVTCVKFNEDSSVVISGSQDN 119 (341)
Q Consensus 46 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 119 (341)
.+..++++|++.|+.++..+. .+.+++++.|.++.+|++.. |.+++.+.+|...|..+..++||++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 455678999999999999886 56789999999999999854 567899999999999999999999999999999
Q ss_pred eEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceE
Q psy17863 120 TVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVK 198 (341)
Q Consensus 120 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~ 198 (341)
.+++||+.+++ ..+.+.. +...|.+++++++.+.+++++ +.+|.
T Consensus 86 ~lrlWDl~~g~---------------------------------~t~~f~G--H~~dVlsva~s~dn~qivSGSrDkTik 130 (315)
T KOG0279|consen 86 TLRLWDLATGE---------------------------------STRRFVG--HTKDVLSVAFSTDNRQIVSGSRDKTIK 130 (315)
T ss_pred eEEEEEecCCc---------------------------------EEEEEEe--cCCceEEEEecCCCceeecCCCcceee
Confidence 99999988654 2223332 445599999999999999988 58999
Q ss_pred EEEccccc--------CCCCeEEEEEccC--CCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEE
Q psy17863 199 LWTAEEDY--------GQEPIVDACFTRD--CQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIF 268 (341)
Q Consensus 199 ~~~~~~~~--------~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (341)
+|+..... +...|.++.|+|+ ..+|++++.|+++++||+++.+....+.+|+..++.+ +++|||...+
T Consensus 131 lwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~--~vSpDGslca 208 (315)
T KOG0279|consen 131 LWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTV--TVSPDGSLCA 208 (315)
T ss_pred eeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEE--EECCCCCEEe
Confidence 99986543 3788999999998 7899999999999999999999999999999998887 8999999999
Q ss_pred EecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEcccccCCccc
Q psy17863 269 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQAGL 333 (341)
Q Consensus 269 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~~~~~~~ 333 (341)
+|+.||.+.+||++.++.+..+. +...|.+++|+|+...|+.+.+..|+||+++++.....+
T Consensus 209 sGgkdg~~~LwdL~~~k~lysl~---a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 209 SGGKDGEAMLWDLNEGKNLYSLE---AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEEL 270 (315)
T ss_pred cCCCCceEEEEEccCCceeEecc---CCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhc
Confidence 99999999999999999988885 889999999999998888888888999999987655444
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=270.93 Aligned_cols=237 Identities=23% Similarity=0.438 Sum_probs=209.2
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEEC
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 84 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 84 (341)
..+++.||.++|..+.|+|+.++|++++.|+++|+|.+.+...+..+++|..+|..+.|+|.|-++|+++.|++-++|..
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcc
Q psy17863 85 TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 164 (341)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~ 164 (341)
....+++.+.+|-+.|.|+.|+|+..++++|+.|.+|++||+.++. .+++|.
T Consensus 523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~----------------------~VRiF~------ 574 (707)
T KOG0263|consen 523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN----------------------SVRIFT------ 574 (707)
T ss_pred ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc----------------------EEEEec------
Confidence 9999999999999999999999999999999999999999988764 233321
Q ss_pred eeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceee
Q psy17863 165 ISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLE 244 (341)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 244 (341)
.|..+|.+++|+|+|++|++|+.||.|.+||+.+++++.
T Consensus 575 -----------------------------------------GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~ 613 (707)
T KOG0263|consen 575 -----------------------------------------GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK 613 (707)
T ss_pred -----------------------------------------CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh
Confidence 146789999999999999999999999999999999999
Q ss_pred eecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc------------------------eEEEEeeeeccceE
Q psy17863 245 EYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ------------------------ISTLIHSVGKAVVN 300 (341)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------------------~~~~~~~~~~~~v~ 300 (341)
.+.+|++.+..+ .|+.+|..||+|+.|.+|++||+..... +..+. ....+|.
T Consensus 614 ~l~~Ht~ti~Sl--sFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~--tK~tpv~ 689 (707)
T KOG0263|consen 614 QLKGHTGTIYSL--SFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFY--TKNTPVV 689 (707)
T ss_pred hhhcccCceeEE--EEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeee--ecCceEE
Confidence 999999999988 8999999999999999999999864322 22333 3455777
Q ss_pred EEEEcCCCcEEEEe
Q psy17863 301 SLCSHPTRKHIMSA 314 (341)
Q Consensus 301 ~~~~~~~~~~l~~~ 314 (341)
.+.|....-.|++|
T Consensus 690 ~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 690 GLHFTRRNLLLAVG 703 (707)
T ss_pred EEEEeccceeEEec
Confidence 88887665445444
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=234.02 Aligned_cols=254 Identities=15% Similarity=0.251 Sum_probs=223.9
Q ss_pred eeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEe
Q psy17863 47 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126 (341)
Q Consensus 47 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 126 (341)
..+++++|.+.|.++.|++|.+++++++.||.+.|||.-+...++.++-....|..++|+|.++++++|+.|+...||++
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 34789999999999999999999999999999999999998888888888999999999999999999999999999999
Q ss_pred cCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc
Q psy17863 127 KSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 206 (341)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 206 (341)
.+... +|.+. .......+...+.+..|-+++..+...++.+..+||+++..
T Consensus 127 s~~d~-------------------~g~~~----------v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~ 177 (343)
T KOG0286|consen 127 STRDA-------------------EGNVR----------VSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ 177 (343)
T ss_pred ccccc-------------------cccce----------eeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccce
Confidence 86531 11111 11112235566888899998888888888999999999865
Q ss_pred -------CCCCeEEEEEcc-CCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEE
Q psy17863 207 -------GQEPIVDACFTR-DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYK 278 (341)
Q Consensus 207 -------~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 278 (341)
|...|.++.++| +++.+++|+-|+..++||++.+..++.|.+|...|..+ .|.|+|.-+++|++|++.++
T Consensus 178 ~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv--~ffP~G~afatGSDD~tcRl 255 (343)
T KOG0286|consen 178 QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSV--RFFPSGDAFATGSDDATCRL 255 (343)
T ss_pred EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceE--EEccCCCeeeecCCCceeEE
Confidence 889999999999 99999999999999999999999999999999999998 89999999999999999999
Q ss_pred EeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCc
Q psy17863 279 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 279 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~ 331 (341)
||++..+.+..+.......+|++++||..|++|.+|. |.++.+||.-+++...
T Consensus 256 yDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg 309 (343)
T KOG0286|consen 256 YDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVG 309 (343)
T ss_pred EeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEE
Confidence 9999999999998666678999999999999999999 9999999987765433
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=231.18 Aligned_cols=294 Identities=18% Similarity=0.315 Sum_probs=244.2
Q ss_pred CceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC--CCcE
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS--DKSV 79 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i 79 (341)
.+++.+.++.-.+.|+++.|+++|.++++++.|.+++|||..++++++++..+...+..+.|....+.++.++. |.+|
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 35666777877899999999999999999999999999999999999999988889999999887777777766 8999
Q ss_pred EEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcC-------eEEeecCCCceEEEeeccC
Q psy17863 80 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP-------IQCCLDSKDSQIFCGSSDG 152 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~g 152 (341)
+..++.+.+.++.+.+|...|..++.+|-+..+++++.|++|++||++..++.. ..+...+.+-.++++....
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCC
Confidence 999999999999999999999999999988999999999999999999766432 2334444455566666666
Q ss_pred eEEEEEccCCcc--eeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCC
Q psy17863 153 KIYKWQLVDSSQ--ISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDE 230 (341)
Q Consensus 153 ~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 230 (341)
.|++||++.... ...+.... ......+.+.|+|||++++.++..+
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~---------------------------------~~~~ew~~l~FS~dGK~iLlsT~~s 209 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITD---------------------------------NDEAEWTDLEFSPDGKSILLSTNAS 209 (311)
T ss_pred eEEEEEecccCCCCceeEccCC---------------------------------CCccceeeeEEcCCCCEEEEEeCCC
Confidence 999999886422 22221110 1246788999999999999999999
Q ss_pred eEEEEeccccceeeeecCcccce-eEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCc
Q psy17863 231 CLRLFDKATGELLEEYKGHKSGD-FRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 309 (341)
Q Consensus 231 ~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 309 (341)
.+++.|.-+|..+..+..+...- ..+.++|+||++++++|+.||+|.+|+++++..+..+.. .+..++.++.|+|...
T Consensus 210 ~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~-~~~~~~~~~~fnP~~~ 288 (311)
T KOG1446|consen 210 FIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG-PNGGPVSCVRFNPRYA 288 (311)
T ss_pred cEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecC-CCCCCccccccCCcee
Confidence 99999999999999888776543 335668999999999999999999999999999999983 2788999999999887
Q ss_pred EEEEeCCCcEEEEEcccccCC
Q psy17863 310 HIMSACGNNVKLWTAEEDYGQ 330 (341)
Q Consensus 310 ~l~~~~d~~i~vw~~~~~~~~ 330 (341)
.++++ +..+.+|-......+
T Consensus 289 mf~sa-~s~l~fw~p~~~~~~ 308 (311)
T KOG1446|consen 289 MFVSA-SSNLVFWLPDEDALP 308 (311)
T ss_pred eeeec-CceEEEEeccccccC
Confidence 77777 678999987765443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=280.83 Aligned_cols=276 Identities=20% Similarity=0.316 Sum_probs=218.1
Q ss_pred EeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCc----c----eeeEecCcccceeEEEEec-CCCEEEEecCCCcE
Q psy17863 9 IDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN----L----LLKTYGGHAHEVNDATAAC-DSSQIASGASDKSV 79 (341)
Q Consensus 9 l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~----~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 79 (341)
+..|.+.|.+++|+|+|++||+|+.|+.|+||+.... . ....+. +...+.+++|+| ++.+|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4558999999999999999999999999999997532 1 222333 346799999987 47899999999999
Q ss_pred EEEECCCCceeeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 80 ILWEVTTGQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
++||+.+++.+..+.+|...|++++|+| ++.+|++++.|+.|++||++++...
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~-------------------------- 611 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI-------------------------- 611 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE--------------------------
Confidence 9999999999999999999999999997 7889999999999999998764310
Q ss_pred ccCCcceeeeEeeecCceEEEEEEC-CCCceEEEeC-CCceEEEEccccc--------CCCCeEEEEEccCCCEEEEeec
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSH-PTRKHIMSAC-GNNVKLWTAEEDY--------GQEPIVDACFTRDCQCILTCST 228 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~i~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~ 228 (341)
..+. ....+.++.|+ +++..+++++ ++.|++||+.... |...|.++.|. ++.++++++.
T Consensus 612 -------~~~~---~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~ 680 (793)
T PLN00181 612 -------GTIK---TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST 680 (793)
T ss_pred -------EEEe---cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC
Confidence 0010 11234555553 3455555554 3667777665421 56789999997 6788999999
Q ss_pred CCeEEEEeccc------cceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE-----------
Q psy17863 229 DECLRLFDKAT------GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI----------- 291 (341)
Q Consensus 229 d~~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------- 291 (341)
|+.|++||+.. ..++..+.+|...+..+ ++++++++|++|+.|+.|++|+.....++..+.
T Consensus 681 D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v--~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~ 758 (793)
T PLN00181 681 DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV--GLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLE 758 (793)
T ss_pred CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE--EEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccc
Confidence 99999999874 35678899999888877 789999999999999999999976655443221
Q ss_pred eeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEc
Q psy17863 292 HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 292 ~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~ 324 (341)
...+...|.+++|+|++..|++++ ||.|+||++
T Consensus 759 ~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 759 VDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 113456799999999999999999 999999986
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=258.40 Aligned_cols=324 Identities=16% Similarity=0.266 Sum_probs=269.7
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
....++.+|..+|+++.|...|..||+|+.|+.|.+||+-...-+..+++|...|+..-|..+.+.+++.+.|+.|++||
T Consensus 98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~Wd 177 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWD 177 (888)
T ss_pred ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEe
Confidence 45678999999999999999999999999999999999988888899999999999999998889999999999999999
Q ss_pred CCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC---------------------------------
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------------------------------- 130 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------------------------------- 130 (341)
+++..+..+.-.|...++.+++.+ +.+++++.|+.+++|++....
T Consensus 178 L~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s 255 (888)
T KOG0306|consen 178 LETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFS 255 (888)
T ss_pred cccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCc
Confidence 999999999999999999999987 689999999999999982100
Q ss_pred -----------------------------------------------------------------------------CcC
Q psy17863 131 -----------------------------------------------------------------------------HHP 133 (341)
Q Consensus 131 -----------------------------------------------------------------------------~~~ 133 (341)
...
T Consensus 256 ~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~ 335 (888)
T KOG0306|consen 256 DRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTE 335 (888)
T ss_pred ccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcc
Confidence 000
Q ss_pred ----------------------------------------eEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEe---
Q psy17863 134 ----------------------------------------IQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH--- 170 (341)
Q Consensus 134 ----------------------------------------~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~--- 170 (341)
+..+..+.++.++..+..+.+++|+..+.++++++..
T Consensus 336 ~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~ 415 (888)
T KOG0306|consen 336 NTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYI 415 (888)
T ss_pred eeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccE
Confidence 0001111111333333445566666665554443311
Q ss_pred -----------------------------------eecCceEEEEEECCCCceEEEeC-CCceEEEEccccc--------
Q psy17863 171 -----------------------------------SVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------- 206 (341)
Q Consensus 171 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------- 206 (341)
..+.+.+.+++.+|+++.+++++ |.++++|++.-..
T Consensus 416 l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k 495 (888)
T KOG0306|consen 416 LASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKK 495 (888)
T ss_pred EEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccce
Confidence 12345688999999999988887 5899999975322
Q ss_pred -----------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCc
Q psy17863 207 -----------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGK 275 (341)
Q Consensus 207 -----------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 275 (341)
-...|.++.+||||++|+++--|.++++|-+.+.+..-.+.||.-||.++ .++||++++++|+.|..
T Consensus 496 ~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~sm--DIS~DSklivTgSADKn 573 (888)
T KOG0306|consen 496 VLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSM--DISPDSKLIVTGSADKN 573 (888)
T ss_pred eeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEE--eccCCcCeEEeccCCCc
Confidence 34678999999999999999999999999999999999999999999988 88999999999999999
Q ss_pred EEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCccc
Q psy17863 276 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQAGL 333 (341)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~~~ 333 (341)
|++|-+.-|.+-..+- +|.+.|.++.|-|+...+.+++ |+.|+-||-++-...+.+
T Consensus 574 VKiWGLdFGDCHKS~f--AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L 630 (888)
T KOG0306|consen 574 VKIWGLDFGDCHKSFF--AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL 630 (888)
T ss_pred eEEeccccchhhhhhh--cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee
Confidence 9999999999999998 8999999999999999999999 999999997765444433
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=244.55 Aligned_cols=263 Identities=24% Similarity=0.391 Sum_probs=221.7
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeee
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 92 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 92 (341)
...|.|+.+ |...+++|..|++|+|||..+..+++.+.+|++.|.|+.|. .+.+++|+.|.+|++||+++++++.+
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhH
Confidence 468999998 45579999999999999999999999999999999999995 66999999999999999999999999
Q ss_pred ecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC-----------cCeEEeecCCCceEEEeeccCeEEEEEccC
Q psy17863 93 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH-----------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVD 161 (341)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~ 161 (341)
+-.|...|..+.|+ +.++++++.|.++.+||+..... ..+. ....++.++++++.|.+|++|++.+
T Consensus 273 lihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN-vVdfd~kyIVsASgDRTikvW~~st 349 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN-VVDFDDKYIVSASGDRTIKVWSTST 349 (499)
T ss_pred HhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee-eeccccceEEEecCCceEEEEeccc
Confidence 99999999999998 45899999999999999987652 2222 2334556999999999999999999
Q ss_pred CcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccc
Q psy17863 162 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGE 241 (341)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 241 (341)
.+.++.+..+. ..|.|+. -.++++++|+.|.+|++||++.|.
T Consensus 350 ~efvRtl~gHk------------------------------------RGIAClQ--Yr~rlvVSGSSDntIRlwdi~~G~ 391 (499)
T KOG0281|consen 350 CEFVRTLNGHK------------------------------------RGIACLQ--YRDRLVVSGSSDNTIRLWDIECGA 391 (499)
T ss_pred eeeehhhhccc------------------------------------ccceehh--ccCeEEEecCCCceEEEEeccccH
Confidence 88888775442 2233332 357889999999999999999999
Q ss_pred eeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCce---------EEEEeeeeccceEEEEEcCCCcEEE
Q psy17863 242 LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQI---------STLIHSVGKAVVNSLCSHPTRKHIM 312 (341)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~ 312 (341)
+++.++||+.-+.+++ | +.+.+++|+.||+|++||+..+... ..+. .|.+.|..+.|. ...++
T Consensus 392 cLRvLeGHEeLvRciR--F--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv--~hsgRVFrLQFD--~fqIv 463 (499)
T KOG0281|consen 392 CLRVLEGHEELVRCIR--F--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV--EHSGRVFRLQFD--EFQII 463 (499)
T ss_pred HHHHHhchHHhhhhee--e--cCceeeeccccceEEEEecccccCCcccccchHHHhhh--hccceeEEEeec--ceEEE
Confidence 9999999999988884 3 4678999999999999999876543 2333 688899999985 56788
Q ss_pred EeC-CCcEEEEEccccc
Q psy17863 313 SAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 313 ~~~-d~~i~vw~~~~~~ 328 (341)
+++ |.+|.|||+..+.
T Consensus 464 sssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 464 SSSHDDTILIWDFLNGP 480 (499)
T ss_pred eccCCCeEEEEEcCCCC
Confidence 888 9999999987654
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=257.99 Aligned_cols=290 Identities=18% Similarity=0.289 Sum_probs=252.2
Q ss_pred eEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC
Q psy17863 7 QTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 7 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 86 (341)
.++.||...|.++++|.+...+++|+ .+.+++|+..+.++++++... .+.+..|.|.++++++|...|.+.+||+.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 36789999999999999998888866 678999999999999999744 789999999999999999999999999999
Q ss_pred CceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCccee
Q psy17863 87 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 166 (341)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~ 166 (341)
...+.+.+.|.+.|+.++.+||+..+++|+.|.+|++||..-.... + |+....+.+ .. ..
T Consensus 444 ~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~--------~------gt~~k~lsl---~~---~r 503 (888)
T KOG0306|consen 444 ASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV--------P------GTQKKVLSL---KH---TR 503 (888)
T ss_pred hhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc--------C------cccceeeee---cc---ce
Confidence 9999999999999999999999999999999999999997632100 0 011111111 11 11
Q ss_pred eeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEecc
Q psy17863 167 TLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 238 (341)
.+. -...+.++.++|++++++++- ++++++|-+++-. |.-||.++.++||++.+++|+.|.+|++|-+.
T Consensus 504 tLe---l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd 580 (888)
T KOG0306|consen 504 TLE---LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD 580 (888)
T ss_pred EEe---ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence 111 234589999999999999886 7899999887754 89999999999999999999999999999999
Q ss_pred ccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CC
Q psy17863 239 TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GN 317 (341)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~ 317 (341)
-|.+.+.+-+|...|.++ .|-|+..++++++.|+.|+-||-...+.++.+. +|...|++++.+|+|.++++++ |.
T Consensus 581 FGDCHKS~fAHdDSvm~V--~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~--~H~~ev~cLav~~~G~~vvs~shD~ 656 (888)
T KOG0306|consen 581 FGDCHKSFFAHDDSVMSV--QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD--GHHSEVWCLAVSPNGSFVVSSSHDK 656 (888)
T ss_pred cchhhhhhhcccCceeEE--EEcccceeEEEecCcceEEeechhhhhhheeec--cchheeeeeEEcCCCCeEEeccCCc
Confidence 999999999999999888 788999999999999999999999999999999 9999999999999999999999 99
Q ss_pred cEEEEEccc
Q psy17863 318 NVKLWTAEE 326 (341)
Q Consensus 318 ~i~vw~~~~ 326 (341)
+|++|.-.+
T Consensus 657 sIRlwE~td 665 (888)
T KOG0306|consen 657 SIRLWERTD 665 (888)
T ss_pred eeEeeeccC
Confidence 999998766
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=236.76 Aligned_cols=275 Identities=16% Similarity=0.252 Sum_probs=234.0
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEEC
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 84 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 84 (341)
...++.+|++.|+++.|+.||.+||||+.+|.|+||+..++.....+...-..+.-+.|+|.+..|++|+.||.+.+|.+
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence 56789999999999999999999999999999999999999998888767778999999999999999999999999999
Q ss_pred CCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeE---------E-eecCCCceEEEeeccCeE
Q psy17863 85 TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ---------C-CLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---------~-~~~~~~~~~~~~~~~g~i 154 (341)
.++...+.+.+|..++++=.|.|+|++++++..||+|++||+.+++..... + .....+..++.|+.++.+
T Consensus 178 p~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~ 257 (399)
T KOG0296|consen 178 PSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVA 257 (399)
T ss_pred CCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccE
Confidence 998888999999999999999999999999999999999999987631111 1 122334477888888888
Q ss_pred EEEEccCCcceeeeEe---------eecCceEEEEEECCCCceEEEeC-CCceEEEEccccc------CCCCeEEEEEcc
Q psy17863 155 YKWQLVDSSQISTLIH---------SVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY------GQEPIVDACFTR 218 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~------~~~~i~~~~~~~ 218 (341)
++-+..+++.+..... ......+.++.++..-.+.+++. +++|.|||+.... |+.+|..+.|.+
T Consensus 258 ~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~ 337 (399)
T KOG0296|consen 258 CGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN 337 (399)
T ss_pred EEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC
Confidence 8887777766554431 11122344555555556666666 6999999998754 888999999999
Q ss_pred CCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeee
Q psy17863 219 DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 282 (341)
Q Consensus 219 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (341)
..+|++++.+|.|+.||.++|+++.++.+|...|..+ +++|+.+++++++.|++.+||+..
T Consensus 338 -t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f--~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 338 -TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDF--ALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred -cchheeeccCceEEeeeccccceEEEEecCchheeEE--EEcCCCcEEEEecCCCeEEEEecC
Confidence 7889999999999999999999999999999999877 899999999999999999999864
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=225.43 Aligned_cols=277 Identities=17% Similarity=0.245 Sum_probs=234.6
Q ss_pred eEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeE--ecCcccceeEEEEec-CCCEEEEecCCCcEEEEE
Q psy17863 7 QTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKT--YGGHAHEVNDATAAC-DSSQIASGASDKSVILWE 83 (341)
Q Consensus 7 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~ 83 (341)
+.+++|.+.|.+++|+.+|..|++|+.|+++.+|+++....... .++|.+.|-.++|+| ....+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 56788999999999999999999999999999999987765544 468999999999988 567899999999999999
Q ss_pred CCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCc
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSS 163 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~ 163 (341)
++.+++........+. .-+.|+|+|++++.++.|..|.+.|.++.+.
T Consensus 94 ~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~-------------------------------- 140 (313)
T KOG1407|consen 94 IRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKI-------------------------------- 140 (313)
T ss_pred eccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccce--------------------------------
Confidence 9999999888755444 4589999999999999999999988876541
Q ss_pred ceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEE
Q psy17863 164 QISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLF 235 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 235 (341)
... ......++.++|+.++.+++...+ |.+.|.....-+ |.....++.|+|+|+++++|+.|..+.+|
T Consensus 141 -~~~---~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLW 216 (313)
T KOG1407|consen 141 -VNE---EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLW 216 (313)
T ss_pred -eeh---hcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeecc
Confidence 000 112234677788877777776666 888887766433 77888999999999999999999999999
Q ss_pred eccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC
Q psy17863 236 DKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 236 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
|++..-+++.+..+.-+|..+ .|+.+|++||+|++|..|-|=++++|..+..++ +.++...++|+|...+||-++
T Consensus 217 D~~ELiC~R~isRldwpVRTl--SFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~---~~~~t~tVAWHPk~~LLAyA~ 291 (313)
T KOG1407|consen 217 DVDELICERCISRLDWPVRTL--SFSHDGRMLASASEDHFIDIAEVETGDRVWEIP---CEGPTFTVAWHPKRPLLAYAC 291 (313)
T ss_pred ChhHhhhheeeccccCceEEE--EeccCcceeeccCccceEEeEecccCCeEEEee---ccCCceeEEecCCCceeeEEe
Confidence 999988999999999999988 899999999999999999999999999999997 788999999999999999887
Q ss_pred -C---------CcEEEEEcc
Q psy17863 316 -G---------NNVKLWTAE 325 (341)
Q Consensus 316 -d---------~~i~vw~~~ 325 (341)
| |.+++|-++
T Consensus 292 ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 292 DDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred cCCCCccccccceeEEecCC
Confidence 3 356666554
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=230.28 Aligned_cols=274 Identities=23% Similarity=0.333 Sum_probs=248.1
Q ss_pred eEEeeeCCcEEEEEEcc---CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 7 QTIDCKQGAIRAVRFNV---DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 7 ~~l~~h~~~v~~~~~~~---~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
.+-.+|+.+|..++||| +|-+|++++.||.-.+-+-++|..+.+|.+|.+.|.+.....+...-++++.|-+-++||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 35678999999999986 888999999999999999999999999999999999999998888889999999999999
Q ss_pred CCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCc----------CeEEeecCCCceEEEeeccCe
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH----------PIQCCLDSKDSQIFCGSSDGK 153 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~ 153 (341)
.-+|..+..+. |..-|..++|+.|.++|++|+.+..+++||++..+.. .........+..+++.+.|++
T Consensus 88 a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t 166 (334)
T KOG0278|consen 88 AVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT 166 (334)
T ss_pred hhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence 99999999987 8999999999999999999999999999999876532 234556677788999999999
Q ss_pred EEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc------CCCCeEEEEEccCCCEEEEee
Q psy17863 154 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCS 227 (341)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~ 227 (341)
|++||.+++..++.+... .++.++.++++|+++..+.++.|.+||...-. .+..|.+..++|+...+++|+
T Consensus 167 VRLWD~rTgt~v~sL~~~---s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGg 243 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLEFN---SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGG 243 (334)
T ss_pred eEEEEeccCcEEEEEecC---CCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCCceEEecC
Confidence 999999999998888754 56899999999999999999999999987643 567899999999999999999
Q ss_pred cCCeEEEEeccccceeeee-cCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc
Q psy17863 228 TDECLRLFDKATGELLEEY-KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 286 (341)
Q Consensus 228 ~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (341)
+|..++.||..+++.+..+ ++|.++|.++ .|+|+|...++|++||+|++|....++.
T Consensus 244 ed~~~~kfDy~TgeEi~~~nkgh~gpVhcV--rFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 244 EDFKVYKFDYNTGEEIGSYNKGHFGPVHCV--RFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred cceEEEEEeccCCceeeecccCCCCceEEE--EECCCCceeeccCCCceEEEEEecCCCc
Confidence 9999999999999999886 8999999998 8999999999999999999999866554
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=223.44 Aligned_cols=288 Identities=20% Similarity=0.352 Sum_probs=237.2
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCC
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 87 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 87 (341)
.|+||..+++.+.|+.+|.+|.+++.|.+..+|-..+|+.+.++.+|.+.|.|+....+.+++++|+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 57899999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred ceeeeecccCccEEEEEEcCCCcEEEEecCC-----CeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 88 QPVRRWREHASKVTCVKFNEDSSVVISGSQD-----NTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
+++..++ ...+|..+.|+++|++++....+ +.|.++|++.... +....
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~--------------------------~~~s~ 137 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS--------------------------DIDSE 137 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh--------------------------hhccc
Confidence 9999998 57889999999999887766533 5566666664321 11122
Q ss_pred cceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccccc--------CCCCeEEEEEccCCCEEEEeecCCeEE
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY--------GQEPIVDACFTRDCQCILTCSTDECLR 233 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~i~ 233 (341)
++...+.. ....++...|.|-++.++++.+ +.|..||.+++. |...|+.+.++||..++++++.|.+-+
T Consensus 138 ep~~kI~t--~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttak 215 (327)
T KOG0643|consen 138 EPYLKIPT--PDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAK 215 (327)
T ss_pred CceEEecC--CccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccce
Confidence 33333333 3356899999999999999875 999999999743 788999999999999999999999999
Q ss_pred EEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcE--------------EEEeeeCCCceEEEEeeeeccce
Q psy17863 234 LFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKI--------------YKWQLVDSSQISTLIHSVGKAVV 299 (341)
Q Consensus 234 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i--------------~iwd~~~~~~~~~~~~~~~~~~v 299 (341)
+||..+.+.++++.. ..++.+. +++|....++.|+..... ++|++-..+.+..++ +|-++|
T Consensus 216 l~D~~tl~v~Kty~t-e~PvN~a--aisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk--GHFGPI 290 (327)
T KOG0643|consen 216 LVDVRTLEVLKTYTT-ERPVNTA--AISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK--GHFGPI 290 (327)
T ss_pred eeeccceeeEEEeee-cccccce--ecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc--ccccCc
Confidence 999999999998873 4566666 788877777766543222 222222234455666 899999
Q ss_pred EEEEEcCCCcEEEEeC-CCcEEEEEcccccC
Q psy17863 300 NSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 300 ~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~ 329 (341)
++++|+|+|+..++|+ ||.|++..++..+-
T Consensus 291 NsvAfhPdGksYsSGGEDG~VR~h~Fd~~YF 321 (327)
T KOG0643|consen 291 NSVAFHPDGKSYSSGGEDGYVRLHHFDSNYF 321 (327)
T ss_pred ceeEECCCCcccccCCCCceEEEEEeccchh
Confidence 9999999999999999 99999998877653
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=247.92 Aligned_cols=286 Identities=24% Similarity=0.397 Sum_probs=239.9
Q ss_pred CCceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc--eeeEecCcccceeEEEEecCCCEEEEecCCCc
Q psy17863 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL--LLKTYGGHAHEVNDATAACDSSQIASGASDKS 78 (341)
Q Consensus 1 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 78 (341)
+|-.....+..|.+.|..+.|-++...|++|+.|..|++|+...++ .+.++.+..++|+.+.|.++++++++++.|+.
T Consensus 163 lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~ 242 (459)
T KOG0288|consen 163 LPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKN 242 (459)
T ss_pred cchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCc
Confidence 3556677889999999999999998899999999999999987665 67788888899999999999999999999999
Q ss_pred EEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeec------CCCceEEEeeccC
Q psy17863 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLD------SKDSQIFCGSSDG 152 (341)
Q Consensus 79 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~g 152 (341)
+++|++.+.+...++.+|.+.|+++.|......+++|+.|.+|+.||+....+........ .....+++|..|+
T Consensus 243 ~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~Dk 322 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDK 322 (459)
T ss_pred eeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeeccccc
Confidence 9999999999999999999999999999877779999999999999998754321111111 1144677888899
Q ss_pred eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeE
Q psy17863 153 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232 (341)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 232 (341)
+|++||.+.......... .+.|+++..+++|..+.+++.|.++
T Consensus 323 kvRfwD~Rs~~~~~sv~~-------------------------------------gg~vtSl~ls~~g~~lLsssRDdtl 365 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPL-------------------------------------GGRVTSLDLSMDGLELLSSSRDDTL 365 (459)
T ss_pred ceEEEeccCCceeeEeec-------------------------------------CcceeeEeeccCCeEEeeecCCCce
Confidence 999999988776655532 3468888899999999999999999
Q ss_pred EEEeccccceeeeecCcc--cceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcE
Q psy17863 233 RLFDKATGELLEEYKGHK--SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKH 310 (341)
Q Consensus 233 ~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 310 (341)
.+.|+++.+....+.... ......+..|||++.|+++|+.||.|+||++.++++...+........|++++|+|.|..
T Consensus 366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred eeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence 999999988877775422 111123348999999999999999999999999999998885444447999999999999
Q ss_pred EEEeC-CCcEEEEE
Q psy17863 311 IMSAC-GNNVKLWT 323 (341)
Q Consensus 311 l~~~~-d~~i~vw~ 323 (341)
|++++ ++.+.+|.
T Consensus 446 Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 446 LLSADKQKAVTLWT 459 (459)
T ss_pred hhcccCCcceEecC
Confidence 99999 99999994
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=250.20 Aligned_cols=289 Identities=17% Similarity=0.295 Sum_probs=248.6
Q ss_pred CCceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEE
Q psy17863 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 80 (341)
Q Consensus 1 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 80 (341)
|+.+..+++..|+.+|.++.|+|..+.++++-.+|.|.|||.++...++.+....-+|.+..|-+..+++++|+.|..|+
T Consensus 1 ~~l~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 1 MKLDFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIR 80 (794)
T ss_pred CcchhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEE
Confidence 45566778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCC---------CCc-CeEEeecCCC-ceEEEee
Q psy17863 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR---------SHH-PIQCCLDSKD-SQIFCGS 149 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---------~~~-~~~~~~~~~~-~~~~~~~ 149 (341)
||+..+++.+..+..|.+.|.+++.+|...++++++.|-.|++||.+.. +.+ .++.++.+.+ +.+++++
T Consensus 81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s 160 (794)
T KOG0276|consen 81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS 160 (794)
T ss_pred EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee
Confidence 9999999999999999999999999999999999999999999998763 222 3333444443 4889999
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEcc--CCCEEEEee
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTR--DCQCILTCS 227 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~ 227 (341)
-|++|++|.+....+..++..+ ...|+++.+-+ |..+|++|+
T Consensus 161 LDrTVKVWslgs~~~nfTl~gH------------------------------------ekGVN~Vdyy~~gdkpylIsga 204 (794)
T KOG0276|consen 161 LDRTVKVWSLGSPHPNFTLEGH------------------------------------EKGVNCVDYYTGGDKPYLISGA 204 (794)
T ss_pred ccccEEEEEcCCCCCceeeecc------------------------------------ccCcceEEeccCCCcceEEecC
Confidence 9999999998887776666543 44566666655 346899999
Q ss_pred cCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCC
Q psy17863 228 TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 228 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
.|.++++||.++..+++++.||...+..+ +|+|.-..+++|++||+++||+..+-++..++. -....+.+++-.+.
T Consensus 205 DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v--~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn--~gleRvW~I~~~k~ 280 (794)
T KOG0276|consen 205 DDLTIKVWDYQTKSCVQTLEGHTNNVSFV--FFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN--YGLERVWCIAAHKG 280 (794)
T ss_pred CCceEEEeecchHHHHHHhhcccccceEE--EecCCCcEEEEecCCccEEEecCcceehhhhhh--cCCceEEEEeecCC
Confidence 99999999999999999999999999988 899999999999999999999998888877777 56778999999999
Q ss_pred CcEEEEeCCCcEEEEEcccccC
Q psy17863 308 RKHIMSACGNNVKLWTAEEDYG 329 (341)
Q Consensus 308 ~~~l~~~~d~~i~vw~~~~~~~ 329 (341)
+..++.|.|....+..+..+..
T Consensus 281 ~~~i~vG~Deg~i~v~lgreeP 302 (794)
T KOG0276|consen 281 DGKIAVGFDEGSVTVKLGREEP 302 (794)
T ss_pred CCeEEEeccCCcEEEEccCCCC
Confidence 8888888855555555554443
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=259.51 Aligned_cols=310 Identities=17% Similarity=0.276 Sum_probs=254.6
Q ss_pred eEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC
Q psy17863 7 QTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 7 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 86 (341)
..++..+.+|..++|+|...+++++-..|.|++||..-+.++..|..|.++|..+.|+|.+.++++|+.|..|++|+..+
T Consensus 3 tkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred chhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------CcCeEEeecCC-CceEEEeeccCeEEEE
Q psy17863 87 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCLDSK-DSQIFCGSSDGKIYKW 157 (341)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~-~~~~~~~~~~g~i~~~ 157 (341)
.+++.++.+|-+.|..+.|++.-..+++++.|.+|+||+..+++ .+.+.|..+++ ++.+++++-|.+|++|
T Consensus 83 rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 83 RRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred ceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 99999999999999999999999999999999999999988754 45666776666 7788999999999999
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEe-CCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEe
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA-CGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFD 236 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 236 (341)
|+.. ++.-... +. ++.-...+...... .+..=.+...--+.|...|+-++|+|.-..+++|+.|..|++|.
T Consensus 163 DisG---LRkk~~~----pg-~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWr 234 (1202)
T KOG0292|consen 163 DISG---LRKKNKA----PG-SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR 234 (1202)
T ss_pred eecc---hhccCCC----CC-CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEE
Confidence 9754 1111110 00 11111111111000 00001111222234788899999999999999999999999999
Q ss_pred ccccc--eeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEe
Q psy17863 237 KATGE--LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 314 (341)
Q Consensus 237 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 314 (341)
+...+ .+.+.++|.+.|.++ .|+|...++++.++|++|+|||+.....+++++ ...+....++-+|..+++|+|
T Consensus 235 mnetKaWEvDtcrgH~nnVssv--lfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr--rendRFW~laahP~lNLfAAg 310 (1202)
T KOG0292|consen 235 MNETKAWEVDTCRGHYNNVSSV--LFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR--RENDRFWILAAHPELNLFAAG 310 (1202)
T ss_pred eccccceeehhhhcccCCcceE--EecCccceeEecCCCccEEEEecccccceeeee--ccCCeEEEEEecCCcceeeee
Confidence 87554 356788999999988 899999999999999999999999999999998 567889999999999999998
Q ss_pred CCCcEEEEEccccc
Q psy17863 315 CGNNVKLWTAEEDY 328 (341)
Q Consensus 315 ~d~~i~vw~~~~~~ 328 (341)
.|+-+.||.++.+.
T Consensus 311 HDsGm~VFkleREr 324 (1202)
T KOG0292|consen 311 HDSGMIVFKLERER 324 (1202)
T ss_pred cCCceEEEEEcccC
Confidence 88888999988554
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=237.16 Aligned_cols=263 Identities=22% Similarity=0.413 Sum_probs=228.0
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeee
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 92 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 92 (341)
+..|++++|+.+|..||+|+.||.+++|+. +|.++.++..|.++|.++.|+.+|++|++++.|+++.+||..+++..+.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 367999999999999999999999999995 6888899999999999999999999999999999999999999999999
Q ss_pred ecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------CcCeEEeecC-CCceEEEeeccCeEEEEEccCCc
Q psy17863 93 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCLDS-KDSQIFCGSSDGKIYKWQLVDSS 163 (341)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~-~~~~~~~~~~~g~i~~~d~~~~~ 163 (341)
+..|..+-.++.|-.+ ..+++.+.|+.|+++.+.... ..++..+.+. .+..|++++.|+++++|......
T Consensus 314 f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred eeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence 9999988788899754 468999999999999987543 3455555544 45588999999999999988877
Q ss_pred ceeeeEeeecCceEEEEEECCCCc----------eEEEeCCCceEEEEccccc-------CCCCeEEEEEccCCCEEEEe
Q psy17863 164 QISTLIHSVGKAVVNSLCSHPTRK----------HIMSACGNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTC 226 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~ 226 (341)
....+..+ ...|..+.|+|.+. ++.++.++.+++||+.... |..+|.+++|+|+|+++++|
T Consensus 393 ~~~~l~~H--skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsG 470 (524)
T KOG0273|consen 393 SVHDLQAH--SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASG 470 (524)
T ss_pred chhhhhhh--ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEec
Confidence 77666554 44599999999764 4455567999999998754 89999999999999999999
Q ss_pred ecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeee
Q psy17863 227 STDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 282 (341)
Q Consensus 227 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (341)
+.||.|.+|+.++++..+.+.+.. .|..+ +|+.+|.+|..+-.||.+++.|++
T Consensus 471 s~dg~V~iws~~~~~l~~s~~~~~-~Ifel--~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 471 SLDGCVHIWSTKTGKLVKSYQGTG-GIFEL--CWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCCeeEeccccchheeEeecCCC-eEEEE--EEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999999999988654 46666 899999999999999999999975
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=231.27 Aligned_cols=303 Identities=17% Similarity=0.277 Sum_probs=237.3
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCC---EEEEecCCCcEEE
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS---QIASGASDKSVIL 81 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~i 81 (341)
+++.+. |.+-|.++... ++.+++|+.||.+++||. .|+....+.+|.++|.+++|.-.+. .+++++.|.++++
T Consensus 98 pl~~~~-hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~L 173 (423)
T KOG0313|consen 98 PLQCFL-HDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRL 173 (423)
T ss_pred cccccc-chhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEE
Confidence 333343 88888888877 779999999999999995 6888999999999999988865333 5999999999999
Q ss_pred EECCCCce----eeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 82 WEVTTGQP----VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 82 w~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
|.++.++. +...++|...|-++...+++..+++|+.|..+++|+.............. ....-...
T Consensus 174 w~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~----------~rrk~~~~ 243 (423)
T KOG0313|consen 174 WKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSN----------RRRKKQKR 243 (423)
T ss_pred EEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccch----------hhhhhhhh
Confidence 99987753 33445899999999999999999999999999999944332211111100 00000000
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCe
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDEC 231 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~ 231 (341)
+-..+..........+..+|.++.|++.+..+-++-|.+|+.||+.... ....+.++..+|..++|++|+.|..
T Consensus 244 ~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~ 323 (423)
T KOG0313|consen 244 EKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRH 323 (423)
T ss_pred hhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCc
Confidence 1111112222333446677999999996666666668999999998765 6778999999999999999999999
Q ss_pred EEEEeccccc---eeeeecCcccceeEEEEEeCCCCC-EEEEecCCCcEEEEeeeCCC-ceEEEEeeeeccceEEEEEcC
Q psy17863 232 LRLFDKATGE---LLEEYKGHKSGDFRIECCLDSKDS-QIFCGSSDGKIYKWQLVDSS-QISTLIHSVGKAVVNSLCSHP 306 (341)
Q Consensus 232 i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~ 306 (341)
+++||.+++. ..+.|.+|.+.|..+ .++|... .|++|+.|+++++||+++.+ ++..+. +|...|.++.|.
T Consensus 324 irl~DPR~~~gs~v~~s~~gH~nwVssv--kwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~--~h~DKvl~vdW~- 398 (423)
T KOG0313|consen 324 IRLWDPRTGDGSVVSQSLIGHKNWVSSV--KWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA--GHNDKVLSVDWN- 398 (423)
T ss_pred eeecCCCCCCCceeEEeeecchhhhhhe--ecCCCCceEEEEEecCCeEEEEEeccCCCcceeec--cCCceEEEEecc-
Confidence 9999998763 467889999988888 6777655 58899999999999999987 899998 899999999997
Q ss_pred CCcEEEEeC-CCcEEEEEccc
Q psy17863 307 TRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 307 ~~~~l~~~~-d~~i~vw~~~~ 326 (341)
++.++++|+ |.+|+++.-..
T Consensus 399 ~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 399 EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred CCceEEeccCcceEEEecccc
Confidence 567899999 99999987543
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=233.98 Aligned_cols=276 Identities=26% Similarity=0.428 Sum_probs=234.7
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEe--------cCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTY--------GGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
...-+.|..|+|||+||++|+.||.|.+||..+|+..+.+ ..+..+|.|+.|+.|..++++|+.||.|++|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 4566889999999999999999999999999988765543 35788999999999999999999999999999
Q ss_pred CCCCceeeeec-ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------c-CeEEeecCCCceEEEeeccCe
Q psy17863 84 VTTGQPVRRWR-EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------H-PIQCCLDSKDSQIFCGSSDGK 153 (341)
Q Consensus 84 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~-~~~~~~~~~~~~~~~~~~~g~ 153 (341)
+++|.+++.+. .|...|+|+.|+.|+..+++++.|.++++.-+++++. . .....+..++..+++++.||+
T Consensus 292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt 371 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT 371 (508)
T ss_pred EecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc
Confidence 99999999997 7999999999999999999999999999999988652 1 223445567779999999999
Q ss_pred EEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEE
Q psy17863 154 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLR 233 (341)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 233 (341)
+++|+..+.+++.++.......+++++-.-|. +...++++...++++
T Consensus 372 vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK---------------------------------npeh~iVCNrsntv~ 418 (508)
T KOG0275|consen 372 VKVWHGKTTECLSTFKPLGTDYPVNSVILLPK---------------------------------NPEHFIVCNRSNTVY 418 (508)
T ss_pred EEEecCcchhhhhhccCCCCcccceeEEEcCC---------------------------------CCceEEEEcCCCeEE
Confidence 99999999999988876554444444444333 335688888889999
Q ss_pred EEeccccceeeeecC-cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEE
Q psy17863 234 LFDKATGELLEEYKG-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 312 (341)
Q Consensus 234 i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 312 (341)
+.++. |+.++.+.. ....--.+.++.+|.|.++++.++|+.++.|.+.+|+....+. .|...+..++-+|..+.||
T Consensus 419 imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~--VhEkdvIGl~HHPHqNllA 495 (508)
T KOG0275|consen 419 IMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP--VHEKDVIGLTHHPHQNLLA 495 (508)
T ss_pred EEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee--cccccccccccCcccchhh
Confidence 99986 777777753 3333345566899999999999999999999999999999999 7899999999999999999
Q ss_pred EeC-CCcEEEEE
Q psy17863 313 SAC-GNNVKLWT 323 (341)
Q Consensus 313 ~~~-d~~i~vw~ 323 (341)
+-+ ||.+++|.
T Consensus 496 sYsEDgllKLWk 507 (508)
T KOG0275|consen 496 SYSEDGLLKLWK 507 (508)
T ss_pred hhcccchhhhcC
Confidence 999 99999996
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=230.22 Aligned_cols=241 Identities=24% Similarity=0.409 Sum_probs=215.0
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC-cceeeEecCcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR-NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
+++...|+||.+.|..++|+..|+++|+++.|-.+++||.++ .++++.+.+|...|.++.|-|.|.++++++.|.+|+.
T Consensus 140 g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~ 219 (406)
T KOG0295|consen 140 GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKA 219 (406)
T ss_pred hhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeE
Confidence 456788999999999999999999999999999999999887 5677888899999999999999999999999999999
Q ss_pred EECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------CcCeEEeecC-------------
Q psy17863 82 WEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCLDS------------- 140 (341)
Q Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~------------- 140 (341)
|++.++-++.++.+|...|..++.+.||..+++++.|.++++|-+.+++ ..++.+..+.
T Consensus 220 We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~ 299 (406)
T KOG0295|consen 220 WECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATG 299 (406)
T ss_pred EecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccC
Confidence 9999999999999999999999999999999999999999999998863 2333333221
Q ss_pred ---CCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEc
Q psy17863 141 ---KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFT 217 (341)
Q Consensus 141 ---~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 217 (341)
....+.+++.|++|++||+.++.++.++..+ ...|..++|+
T Consensus 300 ~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh------------------------------------dnwVr~~af~ 343 (406)
T KOG0295|consen 300 STNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH------------------------------------DNWVRGVAFS 343 (406)
T ss_pred CCCCccEEEeecccceEEEEeccCCeEEEEEecc------------------------------------cceeeeeEEc
Confidence 1238899999999999999999887777553 5568888899
Q ss_pred cCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEee
Q psy17863 218 RDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 281 (341)
Q Consensus 218 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (341)
|.|+||+++..|+++++||++++++.+.+..|..-++++ .|+.+..++++|+-|.++++|..
T Consensus 344 p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~l--Dfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 344 PGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSL--DFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEE--ecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999999999999988888 78888889999999999999974
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=250.44 Aligned_cols=249 Identities=24% Similarity=0.430 Sum_probs=205.0
Q ss_pred eeeEEe-eeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC--------------------------------c------
Q psy17863 5 CVQTID-CKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR--------------------------------N------ 45 (341)
Q Consensus 5 ~~~~l~-~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~--------------------------------~------ 45 (341)
..+.+. .|.+.|.++.||+||+|||+||.|+.|+||.+.. .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 345667 8999999999999999999999999999997544 0
Q ss_pred ----------------------ceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEE
Q psy17863 46 ----------------------LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV 103 (341)
Q Consensus 46 ----------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~ 103 (341)
++++.+.+|.+.|..+.|+. +++|++++.|.+|++|++...+++..|. |.+.|+|+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCV 415 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEE
Confidence 13445679999999999995 4589999999999999999999999987 99999999
Q ss_pred EEcC-CCcEEEEecCCCeEEEEEecCCCC--------cCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecC
Q psy17863 104 KFNE-DSSVVISGSQDNTVMMWDVKSRSH--------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK 174 (341)
Q Consensus 104 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 174 (341)
+|+| |.+++++|+-||.++||++...+. .....+..+++...++|+.+|.+++|+....+.........+.
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence 9999 889999999999999999987652 2334556677778999999999999998887665554332221
Q ss_pred ceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC-CCEEEEeecCCeEEEEeccccceeeeecCcccce
Q psy17863 175 AVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD-CQCILTCSTDECLRLFDKATGELLEEYKGHKSGD 253 (341)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 253 (341)
-.+. ....|+.+.|.|. ...+++.+.|..|||||.++..++..|+|+...-
T Consensus 496 ---------------------------~Kk~-~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~ 547 (712)
T KOG0283|consen 496 ---------------------------KKKK-QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS 547 (712)
T ss_pred ---------------------------Cccc-cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCC
Confidence 0011 1237888888874 3457788899999999999999999999888777
Q ss_pred eEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 254 FRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
..+...|+.||++|+++++|..|++|++..
T Consensus 548 SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 548 SQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 777778999999999999999999999743
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=237.77 Aligned_cols=295 Identities=16% Similarity=0.266 Sum_probs=233.6
Q ss_pred CCceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc----eeeEe-cCcccceeEEEEecCCCEEEEecC
Q psy17863 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL----LLKTY-GGHAHEVNDATAACDSSQIASGAS 75 (341)
Q Consensus 1 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~----~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~ 75 (341)
||......|++|+..|.++++.|.|-.|++|+.|.+|++||+.... -.+.+ ......|.+++|++.+..|++.+.
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence 5677778899999999999999999999999999999999987532 12222 234567999999999999999998
Q ss_pred CCcEEEEECCCCcee------------eeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCC
Q psy17863 76 DKSVILWEVTTGQPV------------RRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKD 142 (341)
Q Consensus 76 dg~i~iw~~~~~~~~------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 142 (341)
....+++|-...+.. ..-++|...++|.+|+| +...+++++.||++++||++..+.
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~----------- 303 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS----------- 303 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh-----------
Confidence 899999995432222 12368999999999999 456789999999999999987541
Q ss_pred ceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc----------CCC--
Q psy17863 143 SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY----------GQE-- 209 (341)
Q Consensus 143 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~----------~~~-- 209 (341)
+..++..+. .......+...+|+++++++++++ +|+|.+|+..... |..
T Consensus 304 ----------q~qVik~k~--------~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~ 365 (641)
T KOG0772|consen 304 ----------QLQVIKTKP--------AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQ 365 (641)
T ss_pred ----------heeEEeecc--------CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCC
Confidence 111221111 112345688999999999999888 5999999975422 444
Q ss_pred CeEEEEEccCCCEEEEeecCCeEEEEecccc-ceeeeecCcccceeEEEEEeCCCCCEEEEecC------CCcEEEEeee
Q psy17863 210 PIVDACFTRDCQCILTCSTDECLRLFDKATG-ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS------DGKIYKWQLV 282 (341)
Q Consensus 210 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~ 282 (341)
.|++++||++|++|++-+.|+++++||+++. +++.+..+-...-....|+|+|+.++|++|.. .|.+++||..
T Consensus 366 ~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~ 445 (641)
T KOG0772|consen 366 DITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRM 445 (641)
T ss_pred ceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecc
Confidence 8999999999999999999999999999875 45666666555545556799999999999864 5789999999
Q ss_pred CCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 283 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 283 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
+.+.++++. -....|..+.|+|.-+.|.+++ ||.+++|-=..
T Consensus 446 t~d~v~ki~--i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 446 TLDTVYKID--ISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred ceeeEEEec--CCCceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 999999988 5577899999999988888888 99999875443
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=247.12 Aligned_cols=315 Identities=20% Similarity=0.304 Sum_probs=242.4
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
.++..|..|.++|+.++|+|++.++++|+.|-.|++|+..+.+++.++.+|-.-|..+.|++.-.++++++.|.+|+||+
T Consensus 42 tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWN 121 (1202)
T KOG0292|consen 42 TLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWN 121 (1202)
T ss_pred hHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEe
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCc
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSS 163 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~ 163 (341)
.++++++..+.+|...|.|..|+|...++++++-|.+|++||+..-+.....-. .-++.+.....++. ++ ....
T Consensus 122 wqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg--~~e~~~~~~~~~~d--Lf--g~~D 195 (1202)
T KOG0292|consen 122 WQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPG--SLEDQMRGQQGNSD--LF--GQTD 195 (1202)
T ss_pred ccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCC--Cchhhhhccccchh--hc--CCcC
Confidence 999999999999999999999999999999999999999999876432111100 00000000000000 00 0112
Q ss_pred ceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccccc---------CCCCeEEEEEccCCCEEEEeecCCeEE
Q psy17863 164 QISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY---------GQEPIVDACFTRDCQCILTCSTDECLR 233 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~i~ 233 (341)
.+.......+...|+-.+|+|.-.++++++| ..+++|...... |...|.++-|+|..+++++.++|++|+
T Consensus 196 aVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksir 275 (1202)
T KOG0292|consen 196 AVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIR 275 (1202)
T ss_pred eeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEE
Confidence 2233344456667999999999999999987 789999988754 889999999999999999999999999
Q ss_pred EEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc----------------eE---------
Q psy17863 234 LFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ----------------IS--------- 288 (341)
Q Consensus 234 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------~~--------- 288 (341)
+||+...+.+++|+.....-+.+ +.+|..+++++|- |+-+.+|.++..++ +.
T Consensus 276 VwDm~kRt~v~tfrrendRFW~l--aahP~lNLfAAgH-DsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d 352 (1202)
T KOG0292|consen 276 VWDMTKRTSVQTFRRENDRFWIL--AAHPELNLFAAGH-DSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKD 352 (1202)
T ss_pred EEecccccceeeeeccCCeEEEE--EecCCcceeeeec-CCceEEEEEcccCceEEEcCCEEEEEccceEEeeecccccc
Confidence 99999999999998777777777 7788887777664 44455666542221 11
Q ss_pred ----EEEe-eeeccceEEEEEcCCCcEEEEeC---CCcEEEEEcccc
Q psy17863 289 ----TLIH-SVGKAVVNSLCSHPTRKHIMSAC---GNNVKLWTAEED 327 (341)
Q Consensus 289 ----~~~~-~~~~~~v~~~~~~~~~~~l~~~~---d~~i~vw~~~~~ 327 (341)
.++. .....++.++.++|....+..++ .+.-.++.+.++
T Consensus 353 ~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~ 399 (1202)
T KOG0292|consen 353 TAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKD 399 (1202)
T ss_pred ceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCc
Confidence 1110 01125788899999876555553 455566666654
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=249.60 Aligned_cols=243 Identities=24% Similarity=0.462 Sum_probs=207.2
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcC-CCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNP-YRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
.++++.+|...|++++|+|+++++++++.|++|+|||+ ..+..++++++|...|++++|+|+++++++|+.|++|++||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD 274 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence 56777899999999999999999999999999999999 55689999999999999999999999999999999999999
Q ss_pred CCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC-----------c-CeEEee-cCCCceEEEeec
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH-----------H-PIQCCL-DSKDSQIFCGSS 150 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----------~-~~~~~~-~~~~~~~~~~~~ 150 (341)
+++++++..+.+|.+.|++++|++++++|++++.|+.|++||+.++.. . ++..+. .+++.++++++.
T Consensus 275 ~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~ 354 (456)
T KOG0266|consen 275 VRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL 354 (456)
T ss_pred ccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence 999999999999999999999999999999999999999999988761 1 233333 355567777888
Q ss_pred cCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCC
Q psy17863 151 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDE 230 (341)
Q Consensus 151 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 230 (341)
|+.+++||+...........+... ...+.+...++.+.++++|+.|+
T Consensus 355 d~~~~~w~l~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~i~sg~~d~ 401 (456)
T KOG0266|consen 355 DRTLKLWDLRSGKSVGTYTGHSNL---------------------------------VRCIFSPTLSTGGKLIYSGSEDG 401 (456)
T ss_pred CCeEEEEEccCCcceeeecccCCc---------------------------------ceeEecccccCCCCeEEEEeCCc
Confidence 888888888777666655443221 01344455678899999999999
Q ss_pred eEEEEeccccceeeeecCc-ccceeEEEEEeCCCCCEEEEec--CCCcEEEEeee
Q psy17863 231 CLRLFDKATGELLEEYKGH-KSGDFRIECCLDSKDSQIFCGS--SDGKIYKWQLV 282 (341)
Q Consensus 231 ~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~ 282 (341)
.|++||+.++..+..+.+| ...+..+ .+++..+++++++ .|+.+++|...
T Consensus 402 ~v~~~~~~s~~~~~~l~~h~~~~~~~~--~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 402 SVYVWDSSSGGILQRLEGHSKAAVSDL--SSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eEEEEeCCccchhhhhcCCCCCceecc--ccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999999999999999999 6666655 8889999999988 78999999753
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=218.44 Aligned_cols=285 Identities=21% Similarity=0.390 Sum_probs=230.4
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCc------------------ceeeEecCcccceeEEEEecCC
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN------------------LLLKTYGGHAHEVNDATAACDS 67 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~ 67 (341)
...+..|++++.+.+|+|||.++|||+.|..|+|.|++.. -.++++-.|..+|+++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 3467889999999999999999999999999999997611 2456777899999999999999
Q ss_pred CEEEEecCCCcEEEEECCCCceeeeec--ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC-----------cCe
Q psy17863 68 SQIASGASDKSVILWEVTTGQPVRRWR--EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH-----------HPI 134 (341)
Q Consensus 68 ~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-----------~~~ 134 (341)
..|++++.|++|+++|+......+.++ ....+|.++.|+|.|.+|+.|..-..+++||+++-+. ..+
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 999999999999999997654333332 2467899999999999999999999999999987541 222
Q ss_pred EE-eecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEE
Q psy17863 135 QC-CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVD 213 (341)
Q Consensus 135 ~~-~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 213 (341)
.. -..+.+...++++.||.|++||--..+++..+...++ ...|.+
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~----------------------------------gsevcS 310 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG----------------------------------GSEVCS 310 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC----------------------------------Cceeee
Confidence 22 3345556778999999999999888888877754433 356777
Q ss_pred EEEccCCCEEEEeecCCeEEEEeccccceeeeecCcc---cceeEEEEEeCCCCCEEEEec-CCCcEEEEeeeCCCceEE
Q psy17863 214 ACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK---SGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLVDSSQIST 289 (341)
Q Consensus 214 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~ 289 (341)
..|..+|+++++.+.|..+++|.+.+++++.++.|-. .........|.....+++.-. ..+.+.-||.+++..+..
T Consensus 311 a~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l 390 (430)
T KOG0640|consen 311 AVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL 390 (430)
T ss_pred EEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh
Confidence 8888899999999999999999999999999987642 122222335666666766654 357899999999887766
Q ss_pred EEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 290 LIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 290 ~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
+.. +|.+.++.+.-||.+..+.+++ |-.+++|--.
T Consensus 391 ~sl-gHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 391 LSL-GHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ccc-CCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 654 8999999999999999999999 9999999743
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=220.51 Aligned_cols=246 Identities=20% Similarity=0.356 Sum_probs=213.2
Q ss_pred ceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEE
Q psy17863 46 LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125 (341)
Q Consensus 46 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 125 (341)
++.+.+++|.+.|.|+++.|.+.++++|+.|++++|||+.+|++..++.+|...|..+++++-..++++++.|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC--------CcCeEEeec-CCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCc
Q psy17863 126 VKSRS--------HHPIQCCLD-SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN 196 (341)
Q Consensus 126 ~~~~~--------~~~~~~~~~-~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (341)
++..+ ...+.++.. +..+.+++|+.|.++++||+++...+..+..+
T Consensus 222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH------------------------- 276 (460)
T KOG0285|consen 222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH------------------------- 276 (460)
T ss_pred chhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC-------------------------
Confidence 98865 234444444 44678999999999999999998777666543
Q ss_pred eEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcE
Q psy17863 197 VKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKI 276 (341)
Q Consensus 197 i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 276 (341)
..+|.++.+.|-...+++|+.|++|++||+..|+....+..|...+.++ +.+|....+|+++.| .|
T Consensus 277 -----------~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral--~lhP~e~~fASas~d-ni 342 (460)
T KOG0285|consen 277 -----------TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRAL--CLHPKENLFASASPD-NI 342 (460)
T ss_pred -----------CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEE--ecCCchhhhhccCCc-cc
Confidence 4567777777766779999999999999999999999999999888877 899999889998877 59
Q ss_pred EEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCccc
Q psy17863 277 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQAGL 333 (341)
Q Consensus 277 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~~~ 333 (341)
+-|++..+..+..+. +|...|++++...|+ ++++|+ .|.+.+||.+++.+-+..
T Consensus 343 k~w~~p~g~f~~nls--gh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 343 KQWKLPEGEFLQNLS--GHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred eeccCCccchhhccc--cccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccc
Confidence 999999999999988 899999999998876 566777 899999999988655443
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=211.85 Aligned_cols=260 Identities=18% Similarity=0.289 Sum_probs=216.9
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCC--EEEEecCCCcEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS--QIASGASDKSVI 80 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~ 80 (341)
+.++..++.|.++|++++. +++++|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.++-. .|++|+.||.|.
T Consensus 33 l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred eeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 3456778999999999998 589999999999999999999999999999999999999998765 899999999999
Q ss_pred EEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEcc
Q psy17863 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLV 160 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~ 160 (341)
+|+....+++..+++|.+.|+.++.+|.+++.++.+.|+.++.||+-.++...+ -++.
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v----------------------~~L~ 168 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV----------------------LNLK 168 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee----------------------eccC
Confidence 999999999999999999999999999999999999999999999887652111 1111
Q ss_pred CCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEEE
Q psy17863 161 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRL 234 (341)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i 234 (341)
.....+.|+|.|.+++....+.|-+|.++... .+..+.++.|.. +..+++|..|+.|++
T Consensus 169 --------------~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~-~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 169 --------------NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLD-GSELLVGGDNEWISL 233 (362)
T ss_pred --------------CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecC-CceEEEecCCceEEE
Confidence 11334889999999999999999999987644 334466666654 456889999999999
Q ss_pred EeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCC-----CceEEEEeeeeccceEEEEE
Q psy17863 235 FDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS-----SQISTLIHSVGKAVVNSLCS 304 (341)
Q Consensus 235 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~ 304 (341)
||..+..+...+.+|...|..+...-.|++.+|+++++||.|+|||++.. +++..+. ....++|+..
T Consensus 234 ~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n---~~~RltCl~~ 305 (362)
T KOG0294|consen 234 KDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELN---TNVRLTCLRV 305 (362)
T ss_pred eccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEee---cCCccceeee
Confidence 99999999999999999999997777888999999999999999998765 2333332 2455666554
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=229.91 Aligned_cols=244 Identities=19% Similarity=0.299 Sum_probs=204.5
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCC-CEEEEecCCCcEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDS-SQIASGASDKSVIL 81 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i 81 (341)
.++++++.+|..+|.+++|+++|..+++++.|+.|++||+++|+++..+. ....++|+.|+|++ +.+++|+.|+.|+.
T Consensus 248 ~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~ 326 (503)
T KOG0282|consen 248 RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQ 326 (503)
T ss_pred cceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEE
Confidence 57899999999999999999999999999999999999999999999987 55678999999988 88999999999999
Q ss_pred EECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC----------cCeEEeecCCCceEEEeecc
Q psy17863 82 WEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH----------HPIQCCLDSKDSQIFCGSSD 151 (341)
Q Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 151 (341)
||+++++.++.+..|-+.|..+.|-++|+++++.+.|+++++|+.+.+.. ....+...+.+..+++-+.|
T Consensus 327 wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~d 406 (503)
T KOG0282|consen 327 WDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMD 406 (503)
T ss_pred EeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccC
Confidence 99999999999999999999999999999999999999999999876532 22233445666778888888
Q ss_pred CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCe
Q psy17863 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDEC 231 (341)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 231 (341)
+.+.+|.+...-.........+. .-.+--..+.|||||.+|++|+.||.
T Consensus 407 N~i~ifs~~~~~r~nkkK~feGh-------------------------------~vaGys~~v~fSpDG~~l~SGdsdG~ 455 (503)
T KOG0282|consen 407 NYIAIFSTVPPFRLNKKKRFEGH-------------------------------SVAGYSCQVDFSPDGRTLCSGDSDGK 455 (503)
T ss_pred ceEEEEecccccccCHhhhhcce-------------------------------eccCceeeEEEcCCCCeEEeecCCcc
Confidence 88888876543222111100000 01234567889999999999999999
Q ss_pred EEEEeccccceeeeecCcccceeEEEEEeCCCC-CEEEEecCCCcEEEEe
Q psy17863 232 LRLFDKATGELLEEYKGHKSGDFRIECCLDSKD-SQIFCGSSDGKIYKWQ 280 (341)
Q Consensus 232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd 280 (341)
+.+||.++-+.+..+++|..++..+ .|+|.. ..+|+++.||.|++|+
T Consensus 456 v~~wdwkt~kl~~~lkah~~~ci~v--~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 456 VNFWDWKTTKLVSKLKAHDQPCIGV--DWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEeechhhhhhhccccCCcceEEE--EecCCCcceeEecccCceeEecC
Confidence 9999999999999999998887776 777754 4699999999999996
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=224.04 Aligned_cols=282 Identities=17% Similarity=0.243 Sum_probs=220.8
Q ss_pred eeeEEeeeCCcEEEEEEccCC-CEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDG-SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
.+..|.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+.+.++..+++.|.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 356789999999999999987 7899999999999999999999999999999999999986 6789999999999999
Q ss_pred CCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------cCeEEeecCC--CceEEEeeccCe
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HPIQCCLDSK--DSQIFCGSSDGK 153 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~--~~~~~~~~~~g~ 153 (341)
++. .+++++.+ .+.+..+.-+..+..++++|. .|.|||.+.... ..+.++.+.+ ...|+++.+|+.
T Consensus 136 ~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 136 IDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred ccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 865 46666653 456777777777778888875 588898764331 1122222222 235556667777
Q ss_pred EEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEE
Q psy17863 154 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLR 233 (341)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 233 (341)
|.+||++...++...... -.-+.++|+|++-.++++++|..++
T Consensus 212 IvLyD~R~~~Pl~KVi~~-------------------------------------mRTN~IswnPeafnF~~a~ED~nlY 254 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVILT-------------------------------------MRTNTICWNPEAFNFVAANEDHNLY 254 (433)
T ss_pred eEEEecccCCccceeeee-------------------------------------ccccceecCccccceeeccccccce
Confidence 777777776666555432 2235677888777789999999999
Q ss_pred EEecccc-ceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEE
Q psy17863 234 LFDKATG-ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 312 (341)
Q Consensus 234 i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 312 (341)
.||++.. +++..+.+|.+.+..+ .|+|-|+-+++|+.|.+|+||....+........ .....|.++.||.|.++++
T Consensus 255 ~~DmR~l~~p~~v~~dhvsAV~dV--dfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~ 331 (433)
T KOG0268|consen 255 TYDMRNLSRPLNVHKDHVSAVMDV--DFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYII 331 (433)
T ss_pred ehhhhhhcccchhhcccceeEEEe--ccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEE
Confidence 9998865 5688889999988877 8999999999999999999999887765433321 2346799999999999999
Q ss_pred EeC-CCcEEEEEcccccCCcc
Q psy17863 313 SAC-GNNVKLWTAEEDYGQAG 332 (341)
Q Consensus 313 ~~~-d~~i~vw~~~~~~~~~~ 332 (341)
+|+ |++|++|.....+....
T Consensus 332 SGSdd~nvRlWka~Aseklgv 352 (433)
T KOG0268|consen 332 SGSDDGNVRLWKAKASEKLGV 352 (433)
T ss_pred ecCCCcceeeeecchhhhcCC
Confidence 999 99999999876554443
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=230.52 Aligned_cols=322 Identities=18% Similarity=0.290 Sum_probs=272.7
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCE-EEEecCCCcEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQ-IASGASDKSVIL 81 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i 81 (341)
.+.+++++++...|+++.=+|--..+|.|..+|+|.++++..++.+.+|+...++|++++|..||+. +++|+..|.+.+
T Consensus 192 ~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~ 271 (910)
T KOG1539|consen 192 GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAF 271 (910)
T ss_pred CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEE
Confidence 3678899999999999999999999999999999999999999999999955699999999999875 566777799999
Q ss_pred EECCCCceeeeec-ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC------------C-----------------
Q psy17863 82 WEVTTGQPVRRWR-EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS------------H----------------- 131 (341)
Q Consensus 82 w~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------------~----------------- 131 (341)
||++..+.+..++ .|.+.|....|.|....+++++.|+.+++|=..++. .
T Consensus 272 wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~il 351 (910)
T KOG1539|consen 272 WDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFIL 351 (910)
T ss_pred EEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEE
Confidence 9999888776665 688888888888888888888888888877443110 0
Q ss_pred --------------------------------------------------------------------------------
Q psy17863 132 -------------------------------------------------------------------------------- 131 (341)
Q Consensus 132 -------------------------------------------------------------------------------- 131 (341)
T Consensus 352 sa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n 431 (910)
T KOG1539|consen 352 SAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN 431 (910)
T ss_pred ecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence
Q ss_pred ------------------cCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeE-eeecCceEEEEEECCCCceEEEe
Q psy17863 132 ------------------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI-HSVGKAVVNSLCSHPTRKHIMSA 192 (341)
Q Consensus 132 ------------------~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 192 (341)
....++....++..+.|++.|.|-+|++..+-....+. ...+..+|.+++....++.++++
T Consensus 432 ~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa 511 (910)
T KOG1539|consen 432 KTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSA 511 (910)
T ss_pred cccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEc
Confidence 01112223334467788899999999999887776663 34567789999999999888887
Q ss_pred C-CCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCC
Q psy17863 193 C-GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS 265 (341)
Q Consensus 193 ~-~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (341)
+ +|.+.+|++.+.. ....+..+..+.....++++..|-.|+++|..+.+.+++|.+|.+.++.+ +|||||+
T Consensus 512 ~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~--~FS~Dgr 589 (910)
T KOG1539|consen 512 GADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDM--TFSPDGR 589 (910)
T ss_pred cCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeee--EeCCCCc
Confidence 7 5999999998876 56778888888888899999999999999999999999999999999988 9999999
Q ss_pred EEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-C-CcEEEEEcccccC
Q psy17863 266 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G-NNVKLWTAEEDYG 329 (341)
Q Consensus 266 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~~i~vw~~~~~~~ 329 (341)
+|++++.|++|++||+.++.++..+. -..+.+++.|+|+|.+||+.. | .-|++|.-...+.
T Consensus 590 WlisasmD~tIr~wDlpt~~lID~~~---vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF~ 652 (910)
T KOG1539|consen 590 WLISASMDSTIRTWDLPTGTLIDGLL---VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLFK 652 (910)
T ss_pred EEEEeecCCcEEEEeccCcceeeeEe---cCCcceeeEECCCCCEEEEEEecCceEEEEEchhHhe
Confidence 99999999999999999999998886 578899999999999999999 7 6799998665443
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=224.86 Aligned_cols=239 Identities=19% Similarity=0.273 Sum_probs=203.9
Q ss_pred cccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC---
Q psy17863 54 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--- 130 (341)
Q Consensus 54 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--- 130 (341)
-..+|..+.|.|+|+.|++|+..|.+.+|+...-.....++.|.++|+++.|++++.++++|+.+|.|++|+.+...
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 34579999999999999999999999999986555555667899999999999999999999999999999976532
Q ss_pred -----CcCeE-EeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccc
Q psy17863 131 -----HHPIQ-CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 204 (341)
Q Consensus 131 -----~~~~~-~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (341)
...+. ..+.+.+..+++++.||+|++||....+....+..
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G---------------------------------- 220 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG---------------------------------- 220 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheecc----------------------------------
Confidence 12333 34556777899999999999999888776666533
Q ss_pred ccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCC
Q psy17863 205 DYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS 284 (341)
Q Consensus 205 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (341)
|.-.+.++.|+|....+++++.|..|++||.++++++.++.+|...|..+ .|++++++|++++.|..++++|+++-
T Consensus 221 --HgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~--~f~~n~N~Llt~skD~~~kv~DiR~m 296 (464)
T KOG0284|consen 221 --HGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAV--KFNPNGNWLLTGSKDQSCKVFDIRTM 296 (464)
T ss_pred --CCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEE--EEcCCCCeeEEccCCceEEEEehhHh
Confidence 34567888888888889999999999999999999999999999988877 89999999999999999999999988
Q ss_pred CceEEEEeeeeccceEEEEEcCCCc-EEEEeC-CCcEEEEEcccccCCcc
Q psy17863 285 SQISTLIHSVGKAVVNSLCSHPTRK-HIMSAC-GNNVKLWTAEEDYGQAG 332 (341)
Q Consensus 285 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~vw~~~~~~~~~~ 332 (341)
+.+..++ +|...|+++.|+|-.. +|.+|+ ||.|..|.+........
T Consensus 297 kEl~~~r--~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~ 344 (464)
T KOG0284|consen 297 KELFTYR--GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE 344 (464)
T ss_pred HHHHHhh--cchhhheeeccccccccceeeccCCCceEEEeccccccccC
Confidence 8899998 8999999999999754 566667 99999999985444433
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=210.13 Aligned_cols=251 Identities=19% Similarity=0.272 Sum_probs=202.9
Q ss_pred eeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECC-CCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEE
Q psy17863 47 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT-TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125 (341)
Q Consensus 47 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 125 (341)
++..+.+|.+.|+.+.|+|+|.+|++|+.|..|.+|++. .-+....+++|.+.|..+.|.+|++.+++++.|.+++.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 344567999999999999999999999999999999954 3455678889999999999999999999999999999999
Q ss_pred ecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEcc
Q psy17863 126 VKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAE 203 (341)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~ 203 (341)
.++++. ...+ ..+...++++..+.-|..++... ++++++||++
T Consensus 119 ~~tG~~---------------------------------~rk~--k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R 163 (338)
T KOG0265|consen 119 AETGKR---------------------------------IRKH--KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR 163 (338)
T ss_pred ccccee---------------------------------eehh--ccccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence 887651 1111 12334466666555565555544 3778888887
Q ss_pred cc------cCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEE
Q psy17863 204 ED------YGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIY 277 (341)
Q Consensus 204 ~~------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 277 (341)
.. ....+++++.|..++..+.+|+-|+.|++||++.+..+..+.||...|+.+ ..+++|.++.+-+.|.+++
T Consensus 164 ~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~l--sls~~gs~llsnsMd~tvr 241 (338)
T KOG0265|consen 164 KKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGL--SLSRYGSFLLSNSMDNTVR 241 (338)
T ss_pred ccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeE--EeccCCCccccccccceEE
Confidence 43 356789999999999999999999999999999999999999999999988 8999999999999999999
Q ss_pred EEeeeCC----CceEEEEeeeec--cceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCccce
Q psy17863 278 KWQLVDS----SQISTLIHSVGK--AVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQAGLS 334 (341)
Q Consensus 278 iwd~~~~----~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~~~~ 334 (341)
+||++.. +++..+....|. .....++|+|++..+.+++ |..+++||.........++
T Consensus 242 vwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklp 305 (338)
T KOG0265|consen 242 VWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLP 305 (338)
T ss_pred EEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcC
Confidence 9998753 335556532333 3456678999999999999 9999999988754443333
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=200.52 Aligned_cols=244 Identities=22% Similarity=0.385 Sum_probs=198.5
Q ss_pred ceeeeEE-eeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC--cceeeEecCcccceeEEEEecCCCEEEEecCCCcE
Q psy17863 3 YTCVQTI-DCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR--NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 79 (341)
Q Consensus 3 ~~~~~~l-~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 79 (341)
+.|...| .+|+..|++++|+|.|++||+|+.|.++.||.-.. .+++.++.+|...|.|++|+++|++||+++.|+.|
T Consensus 50 ~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSV 129 (312)
T KOG0645|consen 50 WTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSV 129 (312)
T ss_pred EEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeE
Confidence 3445455 46999999999999999999999999999998554 46788999999999999999999999999999999
Q ss_pred EEEECCCC---ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEE
Q psy17863 80 ILWEVTTG---QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYK 156 (341)
Q Consensus 80 ~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 156 (341)
-||.+..+ ++...++.|...|..+.|+|...+|++++.|++|++|+-....
T Consensus 130 WiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd-------------------------- 183 (312)
T KOG0645|consen 130 WIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD-------------------------- 183 (312)
T ss_pred EEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCC--------------------------
Confidence 99999754 5677889999999999999999999999999999999866311
Q ss_pred EEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccc---ccCCCCeEEEEEccCCCEEEEeecCCeE
Q psy17863 157 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEE---DYGQEPIVDACFTRDCQCILTCSTDECL 232 (341)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~i 232 (341)
.-...+.+.. +...+-+++|+|.|..++++++ +++++|.... ..|..++..+.|. ...|++++.|+.|
T Consensus 184 ----dW~c~~tl~g--~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i 255 (312)
T KOG0645|consen 184 ----DWECVQTLDG--HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWD--NGVIASGGGDDAI 255 (312)
T ss_pred ----CeeEEEEecC--ccceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeec--ccceEeccCCCEE
Confidence 1111222222 3346899999999988888775 8999999543 3377899999999 4469999999999
Q ss_pred EEEecccc------cee-eeecCcccceeEEEEEeCCC-CCEEEEecCCCcEEEEeee
Q psy17863 233 RLFDKATG------ELL-EEYKGHKSGDFRIECCLDSK-DSQIFCGSSDGKIYKWQLV 282 (341)
Q Consensus 233 ~i~d~~~~------~~~-~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~ 282 (341)
++|.-... +.+ +.-..|...|..+ .+.|. .++|++|+.||.|++|.+.
T Consensus 256 ~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV--~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 256 RLFKESDSPDEPSWNLLAKKEGAHEVDVNSV--QWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EEEEecCCCCCchHHHHHhhhcccccccceE--EEcCCCCCceeecCCCceEEEEEec
Confidence 99976542 111 2335688888888 78884 6799999999999999874
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=242.20 Aligned_cols=282 Identities=20% Similarity=0.285 Sum_probs=231.4
Q ss_pred eeCCcEEEEEEccCCCEEEEEe--CCCeEEEEcCCC------------cceeeEecCcccceeEEEEecCCCEEEEecCC
Q psy17863 11 CKQGAIRAVRFNVDGSYCLTCG--SDKKIKLWNPYR------------NLLLKTYGGHAHEVNDATAACDSSQIASGASD 76 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~t~~--~dg~i~iw~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 76 (341)
.+...|.++..+|||..+|||+ .||.++||+.+. .+.+.....|.+.|+|+.|+|||++||+|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3457799999999999999999 899999998531 24556677899999999999999999999999
Q ss_pred CcEEEEECCC------------------CceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEee
Q psy17863 77 KSVILWEVTT------------------GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCL 138 (341)
Q Consensus 77 g~i~iw~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 138 (341)
+.|.||.... .+....+.+|...|..++|+|++.+|++++.|++|.+||..+.+
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~-------- 162 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE-------- 162 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce--------
Confidence 9999999762 13567788999999999999999999999999999999877542
Q ss_pred cCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccccc-----------
Q psy17863 139 DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY----------- 206 (341)
Q Consensus 139 ~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~----------- 206 (341)
.+..+.. +...|..+.|.|-|+++++-++ +++++|+...-.
T Consensus 163 -------------------------~~~vl~~--H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~ 215 (942)
T KOG0973|consen 163 -------------------------LLKVLRG--HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE 215 (942)
T ss_pred -------------------------eeeeeec--ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh
Confidence 2222322 4556899999999999999875 889999965411
Q ss_pred --CCCCeEEEEEccCCCEEEEeec----CCeEEEEeccccceeeeecCcccceeEEEEEeCC------C-------CC--
Q psy17863 207 --GQEPIVDACFTRDCQCILTCST----DECLRLFDKATGELLEEYKGHKSGDFRIECCLDS------K-------DS-- 265 (341)
Q Consensus 207 --~~~~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~------~-------~~-- 265 (341)
....+..+.|||||++|++... -.++.|.+-.+.+.-..|-||..++.++ .|+| . ..
T Consensus 216 ~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evv--rFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 216 SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVV--RFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEE--EeChHHhccccccCCccCCCcc
Confidence 3456788999999999987543 3468999988888888999999999888 5654 1 11
Q ss_pred --EEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 266 --QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 266 --~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
.+|+|+.|++|.||.....+++..... -....|.+++|+|||..|.+++ ||+|.+..+++++.-
T Consensus 294 y~i~AvgSqDrSlSVW~T~~~RPl~vi~~-lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 294 YCIAAVGSQDRSLSVWNTALPRPLFVIHN-LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELG 360 (942)
T ss_pred eEEEEEecCCccEEEEecCCCCchhhhhh-hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhC
Confidence 578999999999999877777766543 4567899999999999999999 999999999876533
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=231.42 Aligned_cols=231 Identities=19% Similarity=0.277 Sum_probs=178.2
Q ss_pred EEeeeCCcEEEEEEcc-CCCEEEEEeCCCeEEEEcCCCc-------ceeeEecCcccceeEEEEecCC-CEEEEecCCCc
Q psy17863 8 TIDCKQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRN-------LLLKTYGGHAHEVNDATAACDS-SQIASGASDKS 78 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~ 78 (341)
.+.+|.+.|++++|+| ++++|++|+.|++|++||+.++ +.+..+.+|...|.+++|+|++ ++|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999 8899999999999999998764 3567789999999999999975 68999999999
Q ss_pred EEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 79 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
|++||+++++.+..+..|...|.+++|+|++.+|++++.|+.|++||+++++.
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~--------------------------- 202 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI--------------------------- 202 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE---------------------------
Confidence 99999999999999999999999999999999999999999999999886541
Q ss_pred ccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEee----cCCeEEE
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCS----TDECLRL 234 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~d~~i~i 234 (341)
+..+..+ . ......+.|.+++..+++++ .|+.|++
T Consensus 203 ------v~tl~~H--~---------------------------------~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vkl 241 (493)
T PTZ00421 203 ------VSSVEAH--A---------------------------------SAKSQRCLWAKRKDLIITLGCSKSQQRQIML 241 (493)
T ss_pred ------EEEEecC--C---------------------------------CCcceEEEEcCCCCeEEEEecCCCCCCeEEE
Confidence 1111100 0 01122344555555555443 4789999
Q ss_pred Eeccccc-eeeeecCcccceeEEEEEeCCCCCEEEEec-CCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCC
Q psy17863 235 FDKATGE-LLEEYKGHKSGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR 308 (341)
Q Consensus 235 ~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 308 (341)
||+++.. ++.....+..... ....+++++++|++++ .|+.|++||+.+++....... .+..++..++|.|..
T Consensus 242 WDlr~~~~p~~~~~~d~~~~~-~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~-~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 242 WDTRKMASPYSTVDLDQSSAL-FIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY-SSVEPHKGLCMMPKW 315 (493)
T ss_pred EeCCCCCCceeEeccCCCCce-EEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec-cCCCCCcceEecccc
Confidence 9998654 3333333332222 2236899999999887 599999999999887766542 355678899998853
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=207.15 Aligned_cols=265 Identities=18% Similarity=0.239 Sum_probs=206.8
Q ss_pred eCCcEEEEEEcc-CCCEEEEEeCCCeEEEEcCCC-ccee-eEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCc
Q psy17863 12 KQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYR-NLLL-KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 88 (341)
Q Consensus 12 h~~~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 88 (341)
..+.|.+|+||| ...++++++-||+||+|+++. +... +....|.++|.+++|+.||..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 457899999999 455666888999999999887 3322 3345799999999999999999999999999999999995
Q ss_pred eeeeecccCccEEEEEEcCCCc--EEEEecCCCeEEEEEecCCCCcCeEEee--------cCCCceEEEeeccCeEEEEE
Q psy17863 89 PVRRWREHASKVTCVKFNEDSS--VVISGSQDNTVMMWDVKSRSHHPIQCCL--------DSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~g~i~~~d 158 (341)
+..+..|.++|..+.|-+... .|++|+.|.+|+.||++... ++..+. ......++++..++.|.+|+
T Consensus 106 -~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~--pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 106 -VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN--PVATLQLPERVYAADVLYPMAVVATAERHIAVYN 182 (347)
T ss_pred -eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC--eeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence 566677999999999987544 89999999999999999755 333322 23344778888888888888
Q ss_pred ccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEecc
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 238 (341)
++++..........- .-.+++++..+|....+.|+-+|.+.+..+.
T Consensus 183 L~n~~te~k~~~SpL----------------------------------k~Q~R~va~f~d~~~~alGsiEGrv~iq~id 228 (347)
T KOG0647|consen 183 LENPPTEFKRIESPL----------------------------------KWQTRCVACFQDKDGFALGSIEGRVAIQYID 228 (347)
T ss_pred cCCCcchhhhhcCcc----------------------------------cceeeEEEEEecCCceEeeeecceEEEEecC
Confidence 876544333222211 3346677777777777999999999998887
Q ss_pred cc--ceeeeecCccc------ceeEE-EEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCc
Q psy17863 239 TG--ELLEEYKGHKS------GDFRI-ECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 309 (341)
Q Consensus 239 ~~--~~~~~~~~~~~------~~~~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 309 (341)
.+ +.-..|+.|.. .|+.+ .++|+|.-..|++++.||++.+||-.....+...+ .|..+|++.+|+.+|.
T Consensus 229 ~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~--~~~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 229 DPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSE--THPQPITCCSFNRNGS 306 (347)
T ss_pred CCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccC--cCCCccceeEecCCCC
Confidence 76 34445666652 13332 24899999999999999999999987777777777 7999999999999999
Q ss_pred EEEEeC
Q psy17863 310 HIMSAC 315 (341)
Q Consensus 310 ~l~~~~ 315 (341)
++|-+.
T Consensus 307 ifaYA~ 312 (347)
T KOG0647|consen 307 IFAYAL 312 (347)
T ss_pred EEEEEe
Confidence 998763
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=233.97 Aligned_cols=273 Identities=22% Similarity=0.411 Sum_probs=231.2
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeE-ecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCcee
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKT-YGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV 90 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 90 (341)
|...+.+..|. ..++++++.+++|++||..++..+.. +.+|.+.|.++++..-+.++++|+.|.++++||..+|++.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 56788899988 55899999999999999999998888 9999999999999877889999999999999999999999
Q ss_pred eeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------cCeEEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 91 RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
..+.+|.+.+.++... ..++++|+.|.+|++|++.++.. .++.++... ++.+++|+.|+.|++||+.+.
T Consensus 285 ~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~ 361 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTG 361 (537)
T ss_pred EEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCEEEEEecCceEEEEEhhhc
Confidence 9999999999998876 44788899999999999997542 333444433 889999999999999999998
Q ss_pred cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEecccc-c
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATG-E 241 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~ 241 (341)
+++..+..+ ...|.++.+.+. ..+++|+.|+.|++||+++. +
T Consensus 362 ~cl~sl~gH------------------------------------~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~ 404 (537)
T KOG0274|consen 362 KCLKSLSGH------------------------------------TGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRK 404 (537)
T ss_pred eeeeeecCC------------------------------------cceEEEEEecCc-ceEEeeeeccceEeecCCchhh
Confidence 888887653 344566655554 67999999999999999999 9
Q ss_pred eeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEE
Q psy17863 242 LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVK 320 (341)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~ 320 (341)
++..+.+|..-+..+ ...+++|++++.|++|++||..+++++..+... |...|..+++. ...+++++ |+.++
T Consensus 405 c~~tl~~h~~~v~~l----~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~ 477 (537)
T KOG0274|consen 405 CIHTLQGHTSLVSSL----LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVK 477 (537)
T ss_pred hhhhhcCCccccccc----ccccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeE
Confidence 999999999877544 456789999999999999999999999999832 67889988876 34556666 99999
Q ss_pred EEEcccccCCccc
Q psy17863 321 LWTAEEDYGQAGL 333 (341)
Q Consensus 321 vw~~~~~~~~~~~ 333 (341)
+||++.+...+.+
T Consensus 478 l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 478 LWDLRSGTLIRTL 490 (537)
T ss_pred EEecccCchhhhh
Confidence 9999987665543
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=220.87 Aligned_cols=232 Identities=22% Similarity=0.390 Sum_probs=190.7
Q ss_pred cccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCc-
Q psy17863 54 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH- 132 (341)
Q Consensus 54 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~- 132 (341)
....|+|+.+ |...+++|..|++|++||..+..+.+.+.+|.+.|.|+.|. .+.+++|+.|.+|++||.++++.-
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 3467999988 56689999999999999999999999999999999999995 569999999999999999998731
Q ss_pred ------CeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc
Q psy17863 133 ------PIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 206 (341)
Q Consensus 133 ------~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 206 (341)
....-....++++++++.|.++.+||+.....+....... .
T Consensus 272 tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLv---------------------------------G 318 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLV---------------------------------G 318 (499)
T ss_pred HHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHh---------------------------------h
Confidence 1112233456789999999999999987755322111000 0
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc
Q psy17863 207 GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 286 (341)
Q Consensus 207 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (341)
|...++.+.|+ .+++++++.|.+|++|++.+++.++++.+|...|.++ ...++++++|++|.+|++||++.|.+
T Consensus 319 HrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIACl----QYr~rlvVSGSSDntIRlwdi~~G~c 392 (499)
T KOG0281|consen 319 HRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACL----QYRDRLVVSGSSDNTIRLWDIECGAC 392 (499)
T ss_pred hhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceeh----hccCeEEEecCCCceEEEEeccccHH
Confidence 23445555554 4589999999999999999999999999999887654 45689999999999999999999999
Q ss_pred eEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCcc
Q psy17863 287 ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQAG 332 (341)
Q Consensus 287 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~~ 332 (341)
+..++ +|..-|.++.|. .+.+++|. ||+|++||+.....++.
T Consensus 393 LRvLe--GHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra 435 (499)
T KOG0281|consen 393 LRVLE--GHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRA 435 (499)
T ss_pred HHHHh--chHHhhhheeec--CceeeeccccceEEEEecccccCCcc
Confidence 99999 999999999996 57899999 99999999998776644
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=220.86 Aligned_cols=242 Identities=24% Similarity=0.424 Sum_probs=210.2
Q ss_pred eEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC
Q psy17863 49 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 128 (341)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 128 (341)
.++++|..+|++++|+|++++|++++.||.+++|++.+++....+..|...+..+.|+|+++.+++++.+|.+++|++..
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45678999999999999999999999999999999999888888888999999999999999999999999999999875
Q ss_pred CCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-
Q psy17863 129 RSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY- 206 (341)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~- 206 (341)
.+ ....+. .+...+.++.++|++++++++. ++.+.+|++....
T Consensus 83 ~~---------------------------------~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 127 (289)
T cd00200 83 GE---------------------------------CVRTLT--GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC 127 (289)
T ss_pred cc---------------------------------ceEEEe--ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE
Confidence 42 111111 1334588899999988888888 7999999987432
Q ss_pred ------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEe
Q psy17863 207 ------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 280 (341)
Q Consensus 207 ------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (341)
+...+.+++|+|++.++++++.++.+++||+++++.+..+..|...+..+ .++|+++.+++++.||.|++||
T Consensus 128 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~--~~~~~~~~l~~~~~~~~i~i~d 205 (289)
T cd00200 128 LTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV--AFSPDGEKLLSSSSDGTIKLWD 205 (289)
T ss_pred EEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceE--EECCCcCEEEEecCCCcEEEEE
Confidence 66789999999999999988889999999999999888998888888877 8899999999999999999999
Q ss_pred eeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccC
Q psy17863 281 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~ 329 (341)
+.+++.+..+. .|...+.++.|+|++.++++++ |+.|++|++.++..
T Consensus 206 ~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~ 253 (289)
T cd00200 206 LSTGKCLGTLR--GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC 253 (289)
T ss_pred CCCCceecchh--hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee
Confidence 99988888886 6788999999999999999999 99999999986543
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=205.33 Aligned_cols=275 Identities=18% Similarity=0.257 Sum_probs=230.4
Q ss_pred eEecCcccceeEEEEec---CCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEE
Q psy17863 49 KTYGGHAHEVNDATAAC---DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125 (341)
Q Consensus 49 ~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 125 (341)
.+..+|+.+|..++|+| +|-+|++++.|+.-.+-+-++|..+.++.+|.+.|+....+.+....++++.|-+-++||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 34578999999999986 888999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC-------CcCe-EEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEe-CCCc
Q psy17863 126 VKSRS-------HHPI-QCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA-CGNN 196 (341)
Q Consensus 126 ~~~~~-------~~~~-~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 196 (341)
.-++. ...+ .+.+..+..++++|+.+.-+++||++..+....-. ..+...|..+.|....+.++++ .+++
T Consensus 88 a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~-~ghtg~Ir~v~wc~eD~~iLSSadd~t 166 (334)
T KOG0278|consen 88 AVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEI-SGHTGGIRTVLWCHEDKCILSSADDKT 166 (334)
T ss_pred hhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhh-cCCCCcceeEEEeccCceEEeeccCCc
Confidence 87653 1233 44555667799999999999999998766433222 2244568888888777777774 4699
Q ss_pred eEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEe
Q psy17863 197 VKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 270 (341)
Q Consensus 197 i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (341)
+++||..+.. .+.+++++.++++|++|.++ ..+.|.+||..+..+++.++... .|... .++|+...+++|
T Consensus 167 VRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~-nV~SA--SL~P~k~~fVaG 242 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPC-NVESA--SLHPKKEFFVAG 242 (334)
T ss_pred eEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCcc-ccccc--cccCCCceEEec
Confidence 9999998765 67899999999999976665 45689999999999988877543 34444 789999999999
Q ss_pred cCCCcEEEEeeeCCCceEEE-EeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 271 SSDGKIYKWQLVDSSQISTL-IHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 271 ~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
++|+.++.||..+++.+... . +|.++|.++.|+|||...|+|+ ||+|++|....+...
T Consensus 243 ged~~~~kfDy~TgeEi~~~nk--gh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 243 GEDFKVYKFDYNTGEEIGSYNK--GHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CcceEEEEEeccCCceeeeccc--CCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 99999999999999998886 4 8999999999999999999999 999999998765433
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=216.97 Aligned_cols=244 Identities=21% Similarity=0.407 Sum_probs=199.0
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec-CcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-GHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
+++.+++.+|..+|..+.||||.++|++++.|..+.+||+.+|.....+. ++...+.+++|.|||..+++|+.|+++..
T Consensus 259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~ 338 (519)
T KOG0293|consen 259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIM 338 (519)
T ss_pred eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEE
Confidence 57889999999999999999999999999999999999999999888775 34678999999999999999999999999
Q ss_pred EECCCCceeeeeccc-CccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC-------CcCeEEeecCC-CceEEEeeccC
Q psy17863 82 WEVTTGQPVRRWREH-ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-------HHPIQCCLDSK-DSQIFCGSSDG 152 (341)
Q Consensus 82 w~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~-~~~~~~~~~~g 152 (341)
||++ |+.+..+++- ...|.+++.++||+++++.+.|..|++++.++.. ..++.....+. +.++++.-.+.
T Consensus 339 wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~q 417 (519)
T KOG0293|consen 339 WDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQ 417 (519)
T ss_pred ecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccC
Confidence 9985 5555566553 3569999999999999999999999999987643 33444444444 44566667788
Q ss_pred eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEcc-CCCEEEEeecCCe
Q psy17863 153 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTR-DCQCILTCSTDEC 231 (341)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~ 231 (341)
.+++||+...+.+..+..+... .+ +-.-+|.. +..++++|++|+.
T Consensus 418 ei~LWDl~e~~lv~kY~Ghkq~------------~f----------------------iIrSCFgg~~~~fiaSGSED~k 463 (519)
T KOG0293|consen 418 EIHLWDLEENKLVRKYFGHKQG------------HF----------------------IIRSCFGGGNDKFIASGSEDSK 463 (519)
T ss_pred eeEEeecchhhHHHHhhccccc------------ce----------------------EEEeccCCCCcceEEecCCCce
Confidence 8899998877766666544322 11 22223433 4578999999999
Q ss_pred EEEEeccccceeeeecCcccceeEEEEEeCCCCC-EEEEecCCCcEEEEeeeC
Q psy17863 232 LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS-QIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 283 (341)
|+||+..+++++.++.||...+.++ +++|... ++|+++.||+|+||....
T Consensus 464 vyIWhr~sgkll~~LsGHs~~vNcV--swNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 464 VYIWHRISGKLLAVLSGHSKTVNCV--SWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEEEEccCCceeEeecCCcceeeEE--ecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999999999999999999988 8888654 689999999999998654
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=227.54 Aligned_cols=243 Identities=17% Similarity=0.313 Sum_probs=216.2
Q ss_pred eEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC
Q psy17863 49 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 128 (341)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 128 (341)
+++..++..|.++.++|....++++-.+|.|.|||.++...++.+.-..-+|.+..|-+..+.+++|+.|..|++|+.++
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 44566899999999999999999999999999999999999999998899999999999889999999999888888776
Q ss_pred CCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEcccc--
Q psy17863 129 RSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEED-- 205 (341)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~-- 205 (341)
.+ .+..+. .+..-+++++.+|...++++++| -.|++|+.+..
T Consensus 87 ~e---------------------------------kV~~Fe--AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa 131 (794)
T KOG0276|consen 87 GE---------------------------------KVKTFE--AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWA 131 (794)
T ss_pred ce---------------------------------eeEEee--ccccceeeeeecCCCCeEEecCCccEEEEeeccCcee
Confidence 54 333332 35567999999999999999987 57999998764
Q ss_pred ------cCCCCeEEEEEcc-CCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEE
Q psy17863 206 ------YGQEPIVDACFTR-DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYK 278 (341)
Q Consensus 206 ------~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 278 (341)
.|..-|.+++|.| |.+.+++++-|++|++|.+.+..+..++++|...|.++..-.-+|..+|++|+.|.+|+|
T Consensus 132 ~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKv 211 (794)
T KOG0276|consen 132 CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKV 211 (794)
T ss_pred eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEE
Confidence 3888899999999 578899999999999999999999999999999999996555556679999999999999
Q ss_pred EeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 279 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 279 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
||.++..+++++. +|...|..+.|+|.-.++++|+ ||+++||+..+-.
T Consensus 212 WDyQtk~CV~TLe--GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 212 WDYQTKSCVQTLE--GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred eecchHHHHHHhh--cccccceEEEecCCCcEEEEecCCccEEEecCccee
Confidence 9999999999999 9999999999999999999999 9999999976543
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=227.22 Aligned_cols=246 Identities=15% Similarity=0.250 Sum_probs=189.3
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCccee-------------eEecCcccceeEEEEec-CCCEEEEecCCCc
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLL-------------KTYGGHAHEVNDATAAC-DSSQIASGASDKS 78 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~ 78 (341)
-..|+....++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++++.|++
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dgt 99 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGT 99 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCE
Confidence 345666777778777787777777777875433222 23678999999999999 8899999999999
Q ss_pred EEEEECCCC-------ceeeeecccCccEEEEEEcCCC-cEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeec
Q psy17863 79 VILWEVTTG-------QPVRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSS 150 (341)
Q Consensus 79 i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (341)
|++||+.++ +++..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++
T Consensus 100 IkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-------------------- 159 (493)
T PTZ00421 100 IMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK-------------------- 159 (493)
T ss_pred EEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe--------------------
Confidence 999999765 3567788999999999999975 689999999999999987543
Q ss_pred cCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCC
Q psy17863 151 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDE 230 (341)
Q Consensus 151 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 230 (341)
....+. .|...|.+++|+|+|.+|++++.|+
T Consensus 160 -------------~~~~l~------------------------------------~h~~~V~sla~spdG~lLatgs~Dg 190 (493)
T PTZ00421 160 -------------AVEVIK------------------------------------CHSDQITSLEWNLDGSLLCTTSKDK 190 (493)
T ss_pred -------------EEEEEc------------------------------------CCCCceEEEEEECCCCEEEEecCCC
Confidence 000110 1245688899999999999999999
Q ss_pred eEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEec----CCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcC
Q psy17863 231 CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGS----SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 306 (341)
Q Consensus 231 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 306 (341)
.|++||+++++.+..+.+|...... .+.|.+++..+++++ .|+.|++||+++...............+....|++
T Consensus 191 ~IrIwD~rsg~~v~tl~~H~~~~~~-~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~ 269 (493)
T PTZ00421 191 KLNIIDPRDGTIVSSVEAHASAKSQ-RCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDE 269 (493)
T ss_pred EEEEEECCCCcEEEEEecCCCCcce-EEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcC
Confidence 9999999999999999988765432 236778777777654 47999999998765433332112334566778999
Q ss_pred CCcEEEEeC--CCcEEEEEccccc
Q psy17863 307 TRKHIMSAC--GNNVKLWTAEEDY 328 (341)
Q Consensus 307 ~~~~l~~~~--d~~i~vw~~~~~~ 328 (341)
++.+|++++ |+.|++|++.++.
T Consensus 270 d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 270 DTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred CCCEEEEEEeCCCeEEEEEeeCCc
Confidence 999988876 9999999998754
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=225.27 Aligned_cols=227 Identities=17% Similarity=0.241 Sum_probs=179.1
Q ss_pred EeCCCeEEEEcCCCcceeeEecCcccceeEEEEecC-CCEEEEecCCCcEEEEECCCCc--------eeeeecccCccEE
Q psy17863 31 CGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD-SSQIASGASDKSVILWEVTTGQ--------PVRRWREHASKVT 101 (341)
Q Consensus 31 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~v~ 101 (341)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +++|++|+.||+|++||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 556889999998887888899999999999999996 7899999999999999997642 3446788999999
Q ss_pred EEEEcCCCcE-EEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEE
Q psy17863 102 CVKFNEDSSV-VISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 180 (341)
Q Consensus 102 ~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 180 (341)
+++|+|++.. |++++.|+.|++||+++++. ...+.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~---------------------------------~~~i~----------- 165 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKR---------------------------------AFQIN----------- 165 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcE---------------------------------EEEEe-----------
Confidence 9999998865 56889999999999876430 00000
Q ss_pred EECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEE--
Q psy17863 181 CSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIEC-- 258 (341)
Q Consensus 181 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-- 258 (341)
+...|.+++|+|+|.+|++++.|+.|++||+++++.+.++.+|.+.+....+
T Consensus 166 --------------------------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~ 219 (568)
T PTZ00420 166 --------------------------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWI 219 (568)
T ss_pred --------------------------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEe
Confidence 1235778889999999999999999999999999999999999876543321
Q ss_pred -EeCCCCCEEEEecCCC----cEEEEeeeC-CCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccc
Q psy17863 259 -CLDSKDSQIFCGSSDG----KIYKWQLVD-SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 259 -~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~ 327 (341)
.+++++.+|++++.|+ .|+|||+++ ++++..+....+.+.+......+++.++++|+ |+.|++|++..+
T Consensus 220 ~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 220 DGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred eeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 3568888999887764 799999985 55665554323344444455566689999998 999999999765
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=185.85 Aligned_cols=291 Identities=16% Similarity=0.225 Sum_probs=223.8
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCC------Ccc---------eeeEecCcccceeEEEEecCC
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPY------RNL---------LLKTYGGHAHEVNDATAACDS 67 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~------~~~---------~~~~~~~~~~~v~~~~~~~~~ 67 (341)
|+++.+|+ .+..|.+++|+|.|.+.|+|+...+.+|-... .+. ..+.-+.|.+.|+|.+|+|+|
T Consensus 23 f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 23 FEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred eEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc
Confidence 45566665 56789999999999999999999999887422 111 122335689999999999999
Q ss_pred CEEEEecCCCcEEEEECCCCce-----eeeecccCccEEEEEEcC----CCcEEEEecC-CCeEEEEEecCCC-------
Q psy17863 68 SQIASGASDKSVILWEVTTGQP-----VRRWREHASKVTCVKFNE----DSSVVISGSQ-DNTVMMWDVKSRS------- 130 (341)
Q Consensus 68 ~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-d~~i~iwd~~~~~------- 130 (341)
+++++|+.|.+|++..++...+ -..+.-|.+.|..++|.. .+..|++++. |..|.+-|-..++
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg 181 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG 181 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC
Confidence 9999999999999987765433 235667999999999964 3556666653 4455555544433
Q ss_pred -CcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCC
Q psy17863 131 -HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQE 209 (341)
Q Consensus 131 -~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 209 (341)
...+..+..-++-.+++|+.|.+|++||++-...+..+....+.. +....
T Consensus 182 htghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~-----------------------------gless 232 (350)
T KOG0641|consen 182 HTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDG-----------------------------GLESS 232 (350)
T ss_pred CcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCC-----------------------------Ccccc
Confidence 123344445556688999999999999998877666654322210 11245
Q ss_pred CeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCC--Cce
Q psy17863 210 PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS--SQI 287 (341)
Q Consensus 210 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~ 287 (341)
.+.+++..|.|++|++|-.|....+||++.+++++.+..|...|.++ .|+|...++++++.|..|++-|+... ..+
T Consensus 233 avaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~v--rfsp~a~yllt~syd~~ikltdlqgdla~el 310 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCV--RFSPGAHYLLTCSYDMKIKLTDLQGDLAHEL 310 (350)
T ss_pred eeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEE--EeCCCceEEEEecccceEEEeecccchhhcC
Confidence 68889999999999999999999999999999999999999999988 78999999999999999999998532 222
Q ss_pred EEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 288 STLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 288 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
..+....|...+..+.|+|..--+++.+ |.++.+|.++
T Consensus 311 ~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 311 PIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 2222337889999999999998888888 9999999875
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=219.32 Aligned_cols=325 Identities=16% Similarity=0.251 Sum_probs=235.3
Q ss_pred eEEeeeCCcEEEEEEccCCCEEEEEe--CCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC--CCcEEEE
Q psy17863 7 QTIDCKQGAIRAVRFNVDGSYCLTCG--SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS--DKSVILW 82 (341)
Q Consensus 7 ~~l~~h~~~v~~~~~~~~~~~l~t~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iw 82 (341)
+.+..|..++++++|+++|+|+|+|- ....+++|++.....+.+|..|...|+|++|+|.++++++.+. |=.|.+|
T Consensus 72 hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~ 151 (1080)
T KOG1408|consen 72 HLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVN 151 (1080)
T ss_pred heecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhh
Confidence 45667889999999999999999986 5678999999999999999999999999999999999997765 4457788
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------------------------------
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-------------------------------- 130 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------------------------------- 130 (341)
|.+.+-....- .-...|..++|+.++.++++.+ +..|++|.++..+
T Consensus 152 dWr~N~~~asn-kiss~Vsav~fsEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gi 229 (1080)
T KOG1408|consen 152 DWRVNSSGASN-KISSVVSAVAFSEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGI 229 (1080)
T ss_pred hhhhccccccc-ccceeEEEEEEccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcc
Confidence 77543322221 1345566677777776666655 4566666654321
Q ss_pred --------------------------------------------------------------------------------
Q psy17863 131 -------------------------------------------------------------------------------- 130 (341)
Q Consensus 131 -------------------------------------------------------------------------------- 130 (341)
T Consensus 230 cAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~ 309 (1080)
T KOG1408|consen 230 CAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANL 309 (1080)
T ss_pred cccceEEEecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhc
Confidence
Q ss_pred ---------------CcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeE-eeecCceEEEE------------EE
Q psy17863 131 ---------------HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI-HSVGKAVVNSL------------CS 182 (341)
Q Consensus 131 ---------------~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~~~~~~~------------~~ 182 (341)
...+.+.+.+....+.+...|..+++||++..+.+.... ...+...|..+ +.
T Consensus 310 ~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~ac 389 (1080)
T KOG1408|consen 310 SQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAAC 389 (1080)
T ss_pred ccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCccccc
Confidence 011222333344477778888899999988766543321 11222233333 23
Q ss_pred CCCCceEEEeCCCceEEEEccccc--------------------------------------------CCCCeEEEEEcc
Q psy17863 183 HPTRKHIMSACGNNVKLWTAEEDY--------------------------------------------GQEPIVDACFTR 218 (341)
Q Consensus 183 ~~~~~~~~~~~~~~i~~~~~~~~~--------------------------------------------~~~~i~~~~~~~ 218 (341)
-|.+-++.+..+++|++|++.... ....+.+++++|
T Consensus 390 lp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp 469 (1080)
T KOG1408|consen 390 LPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP 469 (1080)
T ss_pred CCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC
Confidence 345667777778999999987511 234689999999
Q ss_pred CCCEEEEeecCCeEEEEeccccc----------------------------------------------eeeeecCcccc
Q psy17863 219 DCQCILTCSTDECLRLFDKATGE----------------------------------------------LLEEYKGHKSG 252 (341)
Q Consensus 219 ~~~~l~~~~~d~~i~i~d~~~~~----------------------------------------------~~~~~~~~~~~ 252 (341)
+|++|++|..-|++++|++...+ +++++.+|...
T Consensus 470 ~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss 549 (1080)
T KOG1408|consen 470 DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS 549 (1080)
T ss_pred CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc
Confidence 99999999999999999986411 12233445544
Q ss_pred eeEEE-----------------------------------------------EEeCCCCCEEEEecCCCcEEEEeeeCCC
Q psy17863 253 DFRIE-----------------------------------------------CCLDSKDSQIFCGSSDGKIYKWQLVDSS 285 (341)
Q Consensus 253 ~~~~~-----------------------------------------------~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (341)
|+.+. ++..|..+++++++.|..|+||++++++
T Consensus 550 ITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK 629 (1080)
T KOG1408|consen 550 ITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK 629 (1080)
T ss_pred eeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccc
Confidence 44433 3455666889999999999999999999
Q ss_pred ceEEEE-eeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCccc
Q psy17863 286 QISTLI-HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQAGL 333 (341)
Q Consensus 286 ~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~~~ 333 (341)
....++ ...|.+....+...|.|-|||+.+ |.++.++|.-.++..+++
T Consensus 630 q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m 679 (1080)
T KOG1408|consen 630 QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM 679 (1080)
T ss_pred eeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence 999998 335667788899999999999999 999999999888765543
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=222.48 Aligned_cols=309 Identities=14% Similarity=0.195 Sum_probs=240.8
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEcCCCccee---eEecCcccceeEEEEecC-----------CCEEEEecCCCcEEE
Q psy17863 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLL---KTYGGHAHEVNDATAACD-----------SSQIASGASDKSVIL 81 (341)
Q Consensus 16 v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~---~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~dg~i~i 81 (341)
.-++.|++....|...-.|..++|||+.+-..+ ..+--|...|+.+.--|. ...+.+++.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 346789998999999999999999998865433 233458888888776551 135889999999999
Q ss_pred EECCCCceeee-------------------------------------ecccCccEEEEEEcCCCcEEEEecCCCeEEEE
Q psy17863 82 WEVTTGQPVRR-------------------------------------WREHASKVTCVKFNEDSSVVISGSQDNTVMMW 124 (341)
Q Consensus 82 w~~~~~~~~~~-------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 124 (341)
|+++.+..-.. .-.....+.+++.+|++++|++|..-|++++|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 99875311000 00223468999999999999999999999999
Q ss_pred EecCCC--------CcCeEEeecCCC----ceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCC--ceEE
Q psy17863 125 DVKSRS--------HHPIQCCLDSKD----SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR--KHIM 190 (341)
Q Consensus 125 d~~~~~--------~~~~~~~~~~~~----~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 190 (341)
++...+ ...+.++..+.. ..|++++.|.-|.+||....-.+.... ..+...|+++.|--.| ..++
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtl-d~HSssITsvKFa~~gln~~Mi 565 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTL-DGHSSSITSVKFACNGLNRKMI 565 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhh-cccccceeEEEEeecCCceEEE
Confidence 998643 334555554433 378999999999999987654433322 2255679999987776 4455
Q ss_pred EeCCCceEEEEccccc-------------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccc-eeEE
Q psy17863 191 SACGNNVKLWTAEEDY-------------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSG-DFRI 256 (341)
Q Consensus 191 ~~~~~~i~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~ 256 (341)
+++.+....|+..... ....+..++..|..+++++++.|..|+|||+++++..+.|++..+. -..+
T Consensus 566 scGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI 645 (1080)
T KOG1408|consen 566 SCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI 645 (1080)
T ss_pred eccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceE
Confidence 5554444445443311 4567889999999999999999999999999999999999864432 3445
Q ss_pred EEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccc
Q psy17863 257 ECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 257 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~ 327 (341)
.+..+|.|.|+++...|.++.++|+.+++++.++. +|...|+.+.|.+|.+.|++.+ ||.|.||.+...
T Consensus 646 Kv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 646 KVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred EEEECCCccEEEEeecCCceEEEEeccchhhhhhc--CcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 56899999999999999999999999999999999 9999999999999999999999 999999998753
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-32 Score=199.78 Aligned_cols=263 Identities=20% Similarity=0.287 Sum_probs=212.9
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceee
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVR 91 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 91 (341)
..+.|+++.|+|.+..|++++.||++++||.....+...++ |..++.+++|.+ ...+++|+-||.|+.+|+.+++...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCccee
Confidence 36789999999999999999999999999999887777776 999999999986 5679999999999999998877644
Q ss_pred eecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC------CcCeEEeecCCCceEEEeeccCeEEEEEccCCcce
Q psy17863 92 RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS------HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
+..|..+|.|+.+++....+++|+.|++|++||.+... ......+....++.|++|+.+..+.+||+++....
T Consensus 90 -igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~ 168 (323)
T KOG1036|consen 90 -IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEP 168 (323)
T ss_pred -eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccch
Confidence 45599999999999988899999999999999998532 12233455667789999999999999999987655
Q ss_pred eeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEecccc----c
Q psy17863 166 STLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATG----E 241 (341)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----~ 241 (341)
.......- .-.+.++++-|++.-+++++-||.|.+=.++.. +
T Consensus 169 ~q~reS~l----------------------------------kyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 169 FQRRESSL----------------------------------KYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQS 214 (323)
T ss_pred hhhccccc----------------------------------eeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhh
Confidence 43322211 345677777777777888999999887665544 2
Q ss_pred eeeeecCccc---------ceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEE
Q psy17863 242 LLEEYKGHKS---------GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 312 (341)
Q Consensus 242 ~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 312 (341)
....|+.|.. +|..+ +|+|-.+.|+||+.||.|.+||+.+.+.+..+. .....|.+++|+.+|..||
T Consensus 215 kkyaFkCHr~~~~~~~~~yPVNai--~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~--~~~~SI~slsfs~dG~~LA 290 (323)
T KOG1036|consen 215 KKYAFKCHRLSEKDTEIIYPVNAI--AFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA--KYETSISSLSFSMDGSLLA 290 (323)
T ss_pred hceeEEeeecccCCceEEEEecee--EeccccceEEecCCCceEEEccCcchhhhhhcc--CCCCceEEEEeccCCCeEE
Confidence 3344555542 34555 899998899999999999999999999999887 5667899999999999999
Q ss_pred EeC
Q psy17863 313 SAC 315 (341)
Q Consensus 313 ~~~ 315 (341)
+++
T Consensus 291 ia~ 293 (323)
T KOG1036|consen 291 IAS 293 (323)
T ss_pred EEe
Confidence 986
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=220.22 Aligned_cols=280 Identities=20% Similarity=0.371 Sum_probs=226.3
Q ss_pred CCceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceee--EecCcccceeE-EEEec-CCCEEEEecCC
Q psy17863 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLK--TYGGHAHEVND-ATAAC-DSSQIASGASD 76 (341)
Q Consensus 1 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~--~~~~~~~~v~~-~~~~~-~~~~l~~~~~d 76 (341)
+.|++.+++.+|+..|..+++.+.. .+++++.||++++|+-...+.+. .+.+|.+-|.. +++.+ ++-.+++|+.|
T Consensus 2 ~~Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D 80 (745)
T KOG0301|consen 2 PQYKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD 80 (745)
T ss_pred CcceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeeccc
Confidence 4688999999999999999987655 79999999999999975554433 46677777777 77775 55569999999
Q ss_pred CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC------CCCcCeEEeecCCCceEEEeec
Q psy17863 77 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS------RSHHPIQCCLDSKDSQIFCGSS 150 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~ 150 (341)
..+.+|......++..+++|...|.++....++. +++|+.|.++++|.... ++...+......+++.+++|+.
T Consensus 81 ~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~~~vTgsa 159 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPENTYVTGSA 159 (745)
T ss_pred ceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcccCCcchheeeeeecCCCcEEeccC
Confidence 9999999999999999999999999999888776 99999999999998764 3344555666666668888888
Q ss_pred cCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCC
Q psy17863 151 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDE 230 (341)
Q Consensus 151 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 230 (341)
|.+|++|.- ++.++.+.. |..-|+.+++-+++. +++++.||
T Consensus 160 DKtIklWk~--~~~l~tf~g------------------------------------HtD~VRgL~vl~~~~-flScsNDg 200 (745)
T KOG0301|consen 160 DKTIKLWKG--GTLLKTFSG------------------------------------HTDCVRGLAVLDDSH-FLSCSNDG 200 (745)
T ss_pred cceeeeccC--Cchhhhhcc------------------------------------chhheeeeEEecCCC-eEeecCCc
Confidence 888888875 444444443 234455555555543 78899999
Q ss_pred eEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcE
Q psy17863 231 CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKH 310 (341)
Q Consensus 231 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 310 (341)
.|++|++ +++.+.++.+|++-++++ ....++..++++++|++++||+.. ++.+.+. .....|.++.+-++|..
T Consensus 201 ~Ir~w~~-~ge~l~~~~ghtn~vYsi--s~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~--lPttsiWsa~~L~NgDI 273 (745)
T KOG0301|consen 201 SIRLWDL-DGEVLLEMHGHTNFVYSI--SMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT--LPTTSIWSAKVLLNGDI 273 (745)
T ss_pred eEEEEec-cCceeeeeeccceEEEEE--EecCCCCeEEEecCCceEEEeecC--ceEEEEe--cCccceEEEEEeeCCCE
Confidence 9999999 799999999999999999 566777899999999999999965 7777776 34558999999999987
Q ss_pred EEEeCCCcEEEEEccccc
Q psy17863 311 IMSACGNNVKLWTAEEDY 328 (341)
Q Consensus 311 l~~~~d~~i~vw~~~~~~ 328 (341)
++.++||.||||..++..
T Consensus 274 vvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 274 VVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred EEeccCceEEEEEecccc
Confidence 777779999999987543
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=196.14 Aligned_cols=242 Identities=19% Similarity=0.268 Sum_probs=198.0
Q ss_pred eeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEe
Q psy17863 47 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126 (341)
Q Consensus 47 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 126 (341)
....+..+.++|..+.|+-||+|.++++.|.+|++|+...+.+++++.+|...|..++.+.|+..+++++.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC--------cCeEEe-ecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCce
Q psy17863 127 KSRSH--------HPIQCC-LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNV 197 (341)
Q Consensus 127 ~~~~~--------~~~~~~-~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 197 (341)
++++. ..+... +......+++|+.|.++++||.+................|
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V-------------------- 148 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGV-------------------- 148 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCce--------------------
Confidence 99763 233333 3444558899999999999999875443322222222223
Q ss_pred EEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEE
Q psy17863 198 KLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIY 277 (341)
Q Consensus 198 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 277 (341)
.++..+ +..+++|+.||+++.||++.|++...+-+| +|+++ +++++++..++++.|++++
T Consensus 149 --------------~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~v--s~s~d~nc~La~~l~stlr 208 (307)
T KOG0316|consen 149 --------------SSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSV--SFSKDGNCSLASSLDSTLR 208 (307)
T ss_pred --------------eEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeE--EecCCCCEEEEeeccceee
Confidence 333332 345999999999999999999887766655 57777 8999999999999999999
Q ss_pred EEeeeCCCceEEEEeeeecc--ceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 278 KWQLVDSSQISTLIHSVGKA--VVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 278 iwd~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
+.|-.+|+.+.... +|.. .-...+++.....+++|+ ||.|++||+.+....
T Consensus 209 LlDk~tGklL~sYk--Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 209 LLDKETGKLLKSYK--GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQI 262 (307)
T ss_pred ecccchhHHHHHhc--ccccceeeeeeeecccceeEEeccCCceEEEEEeccceee
Confidence 99999999999988 6654 334556777788999999 999999999876543
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=207.10 Aligned_cols=274 Identities=18% Similarity=0.251 Sum_probs=233.0
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeee
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 93 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 93 (341)
..|+++...|..+.++||+.|..+.++|...++.+..+++|...|+.+.++|+...+++++.|..|++|...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 57888888888789999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred cccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeec
Q psy17863 94 REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG 173 (341)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 173 (341)
..|..+|+.+..+|.|.||++++.|++..+.|++++. .+........
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~---------------------------------~lt~vs~~~s 346 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS---------------------------------QLTVVSDETS 346 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCc---------------------------------EEEEEeeccc
Confidence 8999999999999999999999999998888877654 2222222223
Q ss_pred CceEEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeee
Q psy17863 174 KAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEE 245 (341)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 245 (341)
...+.+.+|+|||..+.++. ++.+++||+.... |.++|..++|+.+|-+|++++.|+.|++||++..+..++
T Consensus 347 ~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 347 DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKT 426 (506)
T ss_pred cceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccce
Confidence 34588999999999999887 5899999998754 889999999999999999999999999999998887777
Q ss_pred ecCccc-ceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC--CCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEE
Q psy17863 246 YKGHKS-GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD--SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKL 321 (341)
Q Consensus 246 ~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~v 321 (341)
+.-... ++..+ .|++.|.+|+.++.|=.|++++-.+ ..++..+. .|.+..+.+.|....+++++++ |..+++
T Consensus 427 ~~l~~~~~v~s~--~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~--~~sg~st~v~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 427 IQLDEKKEVNSL--SFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA--DHSGLSTGVRFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred eeccccccceeE--EEcCCCCeEEeecceeEEEEEecccccceeeehhh--hcccccceeeecccceEEeeccchhheEE
Confidence 764432 45555 8999999999998876676666333 33444444 6778999999999999999999 999998
Q ss_pred EEc
Q psy17863 322 WTA 324 (341)
Q Consensus 322 w~~ 324 (341)
+.+
T Consensus 503 ~a~ 505 (506)
T KOG0289|consen 503 YAL 505 (506)
T ss_pred eec
Confidence 865
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-32 Score=211.27 Aligned_cols=264 Identities=21% Similarity=0.362 Sum_probs=221.9
Q ss_pred CCcEEEEEEccCCCE-EEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceee
Q psy17863 13 QGAIRAVRFNVDGSY-CLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVR 91 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~-l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 91 (341)
.++|++++|+|..++ +|+.+ .-.+.||+..+....+++......+.++.|..||+++++|...|.|+++|+.+...++
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence 468999999996553 44444 4579999998888888887788999999999999999999999999999987777889
Q ss_pred eecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCC--------CcCeEEeecCC--CceEEEeeccCeEEEEEcc
Q psy17863 92 RWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCLDSK--DSQIFCGSSDGKIYKWQLV 160 (341)
Q Consensus 92 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~--~~~~~~~~~~g~i~~~d~~ 160 (341)
.+..|..++..+.|+| ++..+++|+.|+.+++||+.+.. ...+.+....+ +..+++|+.||.|++||++
T Consensus 105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR 184 (487)
T ss_pred HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence 9999999999999999 66778888999999999998754 22333433333 3479999999999999999
Q ss_pred CCc-ceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc--------CCCCeEEEEEccCCCEEEEeecCCe
Q psy17863 161 DSS-QISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY--------GQEPIVDACFTRDCQCILTCSTDEC 231 (341)
Q Consensus 161 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~ 231 (341)
... .+..+ .+..+|.++.+-|.|..+++++++.+++||+..+. |...|+|+.+..++..|++++-|+.
T Consensus 185 ~~~~~v~el---nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~ 261 (487)
T KOG0310|consen 185 SLTSRVVEL---NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH 261 (487)
T ss_pred cCCceeEEe---cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc
Confidence 874 33333 35568999999999999999999999999998533 8899999999999999999999999
Q ss_pred EEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 232 LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
+++||..+.+.+..+. ..+++..+ +.+|+++.++.|..||.+.+-+...
T Consensus 262 VKVfd~t~~Kvv~s~~-~~~pvLsi--avs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 262 VKVFDTTNYKVVHSWK-YPGPVLSI--AVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred eEEEEccceEEEEeee-cccceeeE--EecCCCceEEEecccceeeeehhhc
Confidence 9999998888888877 45667666 8999999999999999988775433
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=202.14 Aligned_cols=286 Identities=16% Similarity=0.313 Sum_probs=227.2
Q ss_pred CceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
.+++++.+.||.+.|..++.....+.+.+++.|.+.+||.++++.++.++.+|.+.|++++|++.+.++++++.|++-.|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 35778899999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred EEC------CC------------------------------C----ceeeeecccCccEEEEEEcCCCcEEEEecCCCeE
Q psy17863 82 WEV------TT------------------------------G----QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121 (341)
Q Consensus 82 w~~------~~------------------------------~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 121 (341)
|.. .. + .++..+.+|.+.|.+..|...++.+++++.|.+.
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 972 11 0 1455678899999999999999999999999999
Q ss_pred EEEEecCCCC---------cCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEe
Q psy17863 122 MMWDVKSRSH---------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 192 (341)
Q Consensus 122 ~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (341)
.+||++++.. ....+...+....+++.+.|.+.++||++..-+.....
T Consensus 297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VF----------------------- 353 (481)
T KOG0300|consen 297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVF----------------------- 353 (481)
T ss_pred eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeee-----------------------
Confidence 9999998752 22334444555577788888888999887432211111
Q ss_pred CCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccc-eeeeecCcccceeEEEEEeCCCCCEEEEec
Q psy17863 193 CGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGE-LLEEYKGHKSGDFRIECCLDSKDSQIFCGS 271 (341)
Q Consensus 193 ~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (341)
..|...++++.|..+.+ +++|+.|.+|++||+++.+ ++.+++. .+++..+ +.+..+..++.--
T Consensus 354 ------------QGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRv--avs~g~~iIAiPh 417 (481)
T KOG0300|consen 354 ------------QGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRV--AVSKGHPIIAIPH 417 (481)
T ss_pred ------------cccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeec-CCcccee--EeecCCceEEecc
Confidence 11456677888877765 8999999999999998764 5666663 4556666 6777777888888
Q ss_pred CCCcEEEEeeeCCCceEEEE---eeeeccceEEEEEcCCC--cEEEEeC-CCcEEEEEcccc
Q psy17863 272 SDGKIYKWQLVDSSQISTLI---HSVGKAVVNSLCSHPTR--KHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 272 ~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~--~~l~~~~-d~~i~vw~~~~~ 327 (341)
.+..|++||+. |..+..++ .++|...|+|++|..+. .-|++++ |..+.-|++...
T Consensus 418 DNRqvRlfDln-G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 418 DNRQVRLFDLN-GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CCceEEEEecC-CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 88999999974 55555544 44788999999998654 3577888 999999998754
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=220.28 Aligned_cols=238 Identities=15% Similarity=0.147 Sum_probs=176.6
Q ss_pred eeeEEeeeCCcEEEEEEccC-CCEEEEEeCCCeEEEEcCCCcc--------eeeEecCcccceeEEEEecCCCE-EEEec
Q psy17863 5 CVQTIDCKQGAIRAVRFNVD-GSYCLTCGSDKKIKLWNPYRNL--------LLKTYGGHAHEVNDATAACDSSQ-IASGA 74 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~i~iw~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~-l~~~~ 74 (341)
.+..+.+|.++|.+++|+|+ +++||+|+.||+|+|||+.++. ++..+.+|...|.+++|+|++.. |++++
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence 56788999999999999997 7899999999999999987542 34467889999999999998876 56889
Q ss_pred CCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeE
Q psy17863 75 SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 75 ~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 154 (341)
.|++|++||+++++....+. |...|.+++|+|+|.+|++++.|+.|++||+++++.
T Consensus 146 ~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~----------------------- 201 (568)
T PTZ00420 146 FDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI----------------------- 201 (568)
T ss_pred CCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE-----------------------
Confidence 99999999999998877775 667899999999999999999999999999886541
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCC----
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDE---- 230 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---- 230 (341)
+..+..+ ...+.. ..+....|++++.++++++.|+
T Consensus 202 ----------i~tl~gH--~g~~~s-----------------------------~~v~~~~fs~d~~~IlTtG~d~~~~R 240 (568)
T PTZ00420 202 ----------ASSFHIH--DGGKNT-----------------------------KNIWIDGLGGDDNYILSTGFSKNNMR 240 (568)
T ss_pred ----------EEEEecc--cCCcee-----------------------------EEEEeeeEcCCCCEEEEEEcCCCCcc
Confidence 1111111 000000 0112234567888888877664
Q ss_pred eEEEEeccc-cceeeeecCcccceeEEEEEe-CCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCC
Q psy17863 231 CLRLFDKAT-GELLEEYKGHKSGDFRIECCL-DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR 308 (341)
Q Consensus 231 ~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 308 (341)
.|++||+++ .+++..+..+.. ...+...+ .+++.++++|+.|+.|++|++..+. +..+....+..+..+++|.|+.
T Consensus 241 ~VkLWDlr~~~~pl~~~~ld~~-~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 241 EMKLWDLKNTTSALVTMSIDNA-SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEEECCCCCCceEEEEecCC-ccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 799999985 455555443322 22222233 4558889999999999999997763 4444433466789999999975
Q ss_pred c
Q psy17863 309 K 309 (341)
Q Consensus 309 ~ 309 (341)
.
T Consensus 319 ~ 319 (568)
T PTZ00420 319 I 319 (568)
T ss_pred c
Confidence 3
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-31 Score=216.39 Aligned_cols=241 Identities=23% Similarity=0.385 Sum_probs=203.7
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecC-cccceeEEEEecCCCEEEEecCCCcEEEEECCCCcee
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG-HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV 90 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 90 (341)
+...|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.|+.|..+|++..+..
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence 378999999999999999999999999999999999999998 99999999997 678999999999999999988765
Q ss_pred ee-ecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeE
Q psy17863 91 RR-WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 169 (341)
Q Consensus 91 ~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 169 (341)
.. +.+|...|..++|++|+.++|+|+.|+.+.|||..... +...+
T Consensus 294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~---------------------------------p~~~~- 339 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE---------------------------------PKFTF- 339 (484)
T ss_pred hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc---------------------------------ccEEE-
Confidence 55 88899999999999999999999999999999974322 11122
Q ss_pred eeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEE--eecCCeEEEEeccccceeeeec
Q psy17863 170 HSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILT--CSTDECLRLFDKATGELLEEYK 247 (341)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~ 247 (341)
..+...|..++|+|-..- .||+ |+.|+.|++||..+++.+..+.
T Consensus 340 -~~H~aAVKA~awcP~q~~---------------------------------lLAsGGGs~D~~i~fwn~~~g~~i~~vd 385 (484)
T KOG0305|consen 340 -TEHTAAVKALAWCPWQSG---------------------------------LLATGGGSADRCIKFWNTNTGARIDSVD 385 (484)
T ss_pred -eccceeeeEeeeCCCccC---------------------------------ceEEcCCCcccEEEEEEcCCCcEecccc
Confidence 224455666666665433 3444 4569999999999999988876
Q ss_pred CcccceeEEEEEeCCCCCEEEE--ecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEc
Q psy17863 248 GHKSGDFRIECCLDSKDSQIFC--GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~ 324 (341)
. ...|..+ .|++..+.|++ |..++.|.||++.+.+++..+. +|...|..++++|||..+++|+ |.++++|++
T Consensus 386 t-gsQVcsL--~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~--gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 386 T-GSQVCSL--IWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL--GHTSRVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred c-CCceeeE--EEcCCCCEEEEecCCCCCcEEEEeccccceeeeec--CCcceeEEEEECCCCCEEEEecccCcEEeccc
Confidence 4 3456666 89998877766 4567899999999999999998 9999999999999999999999 999999998
Q ss_pred ccc
Q psy17863 325 EED 327 (341)
Q Consensus 325 ~~~ 327 (341)
-+.
T Consensus 461 f~~ 463 (484)
T KOG0305|consen 461 FDE 463 (484)
T ss_pred cCC
Confidence 774
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=203.45 Aligned_cols=282 Identities=20% Similarity=0.288 Sum_probs=216.2
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCccee----eE-------------e-cCcccceeEEEEecCC
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLL----KT-------------Y-GGHAHEVNDATAACDS 67 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~----~~-------------~-~~~~~~v~~~~~~~~~ 67 (341)
.+.+..|.-+|.+++++|+.++.++++.+|+|.=|++.+++.. .+ - +.|...+.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 4667889999999999999999999999999999998877633 11 1 2688899999999999
Q ss_pred CEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------CcCeEEeec
Q psy17863 68 SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCLD 139 (341)
Q Consensus 68 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~ 139 (341)
++|++|+.|..|.||+.++.+.++.+++|.+.|.+++|-.....|++++.|+.+++|+++... +..+..+..
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA 294 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence 999999999999999999999999999999999999999988899999999999999988643 233333333
Q ss_pred CCCc-eEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEcc
Q psy17863 140 SKDS-QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTR 218 (341)
Q Consensus 140 ~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 218 (341)
.... .+-+|+.|+++++|++....++... . +...+.|++|-.
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~eesqlifr---g----------------------------------~~~sidcv~~In 337 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIPEESQLIFR---G----------------------------------GEGSIDCVAFIN 337 (479)
T ss_pred hcccceEEeccccceeEEEeccccceeeee---C----------------------------------CCCCeeeEEEec
Confidence 3333 4455669999999998543322111 1 134566666665
Q ss_pred CCCEEEEeecCCeEEEEeccccceeeeecC-cc-----------cceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCC-
Q psy17863 219 DCQCILTCSTDECLRLFDKATGELLEEYKG-HK-----------SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS- 285 (341)
Q Consensus 219 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~- 285 (341)
+. .+++|+.+|.|.+|++...+++.+.+. |. ..++.+ +..|...++++|+.+|.|++|.+.++-
T Consensus 338 ~~-HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsl--a~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 338 DE-HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSL--AVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred cc-ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeee--EecccCceEEecCCCCceEEEEecCCcc
Confidence 53 489999999999999988888766531 21 134444 778888999999999999999998872
Q ss_pred ceEEEEeeeeccceEEEEEcCCCcEEEEeC--CCcEEEEEcccc
Q psy17863 286 QISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEED 327 (341)
Q Consensus 286 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~~ 327 (341)
.+..+....-.+-|++++|+++|+.+++|. ...+-=|-....
T Consensus 415 ~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~ 458 (479)
T KOG0299|consen 415 AINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKS 458 (479)
T ss_pred ccceeeecccccEEEEEEEccCCCEEEEecccccccceeeEeec
Confidence 233333224678899999999999776665 555555554433
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=195.63 Aligned_cols=239 Identities=17% Similarity=0.248 Sum_probs=195.9
Q ss_pred CCcEEEEEEccC-CCEEEEEeCCCeEEEEcCCC-cceeeEecCcccceeEEEEec-CCCEEEEecCCCcEEEEECCCCce
Q psy17863 13 QGAIRAVRFNVD-GSYCLTCGSDKKIKLWNPYR-NLLLKTYGGHAHEVNDATAAC-DSSQIASGASDKSVILWEVTTGQP 89 (341)
Q Consensus 13 ~~~v~~~~~~~~-~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~ 89 (341)
.+.+..++|+++ .+.+++++.||++++||+.. ..++..++.|..+|.++.|++ +++.+++++.|++|++|+...++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 567899999986 46788899999999999543 457888999999999999998 456678889999999999999999
Q ss_pred eeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeee
Q psy17863 90 VRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 168 (341)
Q Consensus 90 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 168 (341)
++++.+|...|...+|+| ..+++++++.|+++++||++... +.+. +
T Consensus 140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g--------------------------------k~~~-i 186 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG--------------------------------KFMS-I 186 (311)
T ss_pred eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC--------------------------------ceeE-E
Confidence 999999999999999999 78899999999999999987542 1111 1
Q ss_pred EeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEcc-CCCEEEEeecCCeEEEEecccc-ceeeee
Q psy17863 169 IHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTR-DCQCILTCSTDECLRLFDKATG-ELLEEY 246 (341)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-~~~~~~ 246 (341)
.. |...|.++.|+. +.+.+++|+.|+.|+.||+++- .++.++
T Consensus 187 ~a------------------------------------h~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL 230 (311)
T KOG0277|consen 187 EA------------------------------------HNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL 230 (311)
T ss_pred Ee------------------------------------ccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee
Confidence 11 234566666665 5567899999999999999875 468899
Q ss_pred cCcccceeEEEEEeCCCC-CEEEEecCCCcEEEEeeeCCC-ceEEEEeeeeccceEEEEEcCC-CcEEEEeC-CCcEEEE
Q psy17863 247 KGHKSGDFRIECCLDSKD-SQIFCGSSDGKIYKWQLVDSS-QISTLIHSVGKAVVNSLCSHPT-RKHIMSAC-GNNVKLW 322 (341)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~-d~~i~vw 322 (341)
.+|.-.|..+ .++|.. ..|++++.|-+++|||...+. .+.+.. .|..-+..+.|++- ..++|+++ |+.++||
T Consensus 231 ~gh~~AVRkv--k~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~--~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw 306 (311)
T KOG0277|consen 231 NGHGLAVRKV--KFSPHHASLLASASYDMTVRIWDPERQDSAIETVD--HHTEFVCGLDWSLFDPGQVASTGWDELLYVW 306 (311)
T ss_pred cCCceEEEEE--ecCcchhhHhhhccccceEEecccccchhhhhhhh--ccceEEeccccccccCceeeecccccceeee
Confidence 9999999888 666643 478999999999999987543 445555 68888999999985 56888888 9999999
Q ss_pred Ec
Q psy17863 323 TA 324 (341)
Q Consensus 323 ~~ 324 (341)
+.
T Consensus 307 ~p 308 (311)
T KOG0277|consen 307 NP 308 (311)
T ss_pred cc
Confidence 84
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=197.00 Aligned_cols=283 Identities=16% Similarity=0.244 Sum_probs=205.9
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCccee--eEe--cCcccceeEEEEecCCCEEEEe-cCCCcEE
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLL--KTY--GGHAHEVNDATAACDSSQIASG-ASDKSVI 80 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~--~~~--~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~ 80 (341)
+..|++|.+.|++++|+.||++|||++.|++|++|++.+.+.. +.+ .-.-+--+.+.|.||-+-++.. -...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 3468999999999999999999999999999999998764321 111 1112245788999998765544 4456799
Q ss_pred EEECCCCc---eee---------eecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEe
Q psy17863 81 LWEVTTGQ---PVR---------RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCG 148 (341)
Q Consensus 81 iw~~~~~~---~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 148 (341)
+|.+...+ ... .-+.|.-.+..+-...++.+|++++.|..|.+|+++...
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~------------------ 220 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQL------------------ 220 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCce------------------
Confidence 99875322 111 112356667777777788888888888888888877321
Q ss_pred eccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccc---------------cCCCCeE
Q psy17863 149 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED---------------YGQEPIV 212 (341)
Q Consensus 149 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~---------------~~~~~i~ 212 (341)
+..+.. ....-+..+.+|+|+++++++ ...+++|.+--. .|...+.
T Consensus 221 ----------------L~~idt--nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~ 282 (420)
T KOG2096|consen 221 ----------------LQSIDT--NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVL 282 (420)
T ss_pred ----------------eeeecc--ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhhee
Confidence 111111 112245678899999998876 478999986432 2788999
Q ss_pred EEEEccCCCEEEEeecCCeEEEEeccc-------cceeeee--cCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 213 DACFTRDCQCILTCSTDECLRLFDKAT-------GELLEEY--KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 213 ~~~~~~~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
.++|+++...+++.+.||.+++||..- .+.+++. .-|...-..+++.++|+|+.|+... ...++++..++
T Consensus 283 ~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~ 361 (420)
T KOG2096|consen 283 AAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASED 361 (420)
T ss_pred eeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEccc
Confidence 999999999999999999999999652 1223333 1233333345668999998877653 45799999999
Q ss_pred CCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEccc
Q psy17863 284 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 284 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
++....+.. .|...|.+++|+++|+++++++|..+++..-..
T Consensus 362 g~~~~~~e~-~h~~~Is~is~~~~g~~~atcGdr~vrv~~ntp 403 (420)
T KOG2096|consen 362 GKDYPELED-IHSTTISSISYSSDGKYIATCGDRYVRVIRNTP 403 (420)
T ss_pred CccchhHHH-hhcCceeeEEecCCCcEEeeecceeeeeecCCC
Confidence 988777764 689999999999999999999999999987433
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=221.73 Aligned_cols=289 Identities=22% Similarity=0.399 Sum_probs=227.6
Q ss_pred eCCcEE---EEEEc-cCCCEEEEEeCCCeEEEEcCCCcc------eeeEecCcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 12 KQGAIR---AVRFN-VDGSYCLTCGSDKKIKLWNPYRNL------LLKTYGGHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 12 h~~~v~---~~~~~-~~~~~l~t~~~dg~i~iw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
|...|. .+..+ |.+++|+|||.||.|++|+..... .+..++.|...|+.+....+++.|++++.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 444455 44444 467789999999999999975432 36678899999999999999999999999999999
Q ss_pred EECCCC--ceeeeecccCccEEEEEE-cCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 82 WEVTTG--QPVRRWREHASKVTCVKF-NEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 82 w~~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
|+...+ -+..++..|.+.|.|+++ .++..++|+|+-|+.|.+||++++....+.... .+..-+
T Consensus 100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n--------------~~t~~s 165 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN--------------NVTVNS 165 (735)
T ss_pred eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc--------------cccccc
Confidence 999887 577888999999999999 778999999999999999999976421111000 000000
Q ss_pred ccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCC
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDE 230 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~ 230 (341)
+ .......+++++.++.+..+++++ .+.+++||.+... |...|..+..++||..+++++.||
T Consensus 166 l----------~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDg 235 (735)
T KOG0308|consen 166 L----------GSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDG 235 (735)
T ss_pred C----------CCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCc
Confidence 0 002445678888888887776665 3778888877644 788999999999999999999999
Q ss_pred eEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcE
Q psy17863 231 CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKH 310 (341)
Q Consensus 231 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 310 (341)
+|++||+...+++.++..|...++.+ ..+|+-..+++|+.||.|+.-|+++......+. ....+|..+..+...+-
T Consensus 236 tIrlWdLgqQrCl~T~~vH~e~VWaL--~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic--k~daPv~~l~~~~~~~~ 311 (735)
T KOG0308|consen 236 TIRLWDLGQQRCLATYIVHKEGVWAL--QSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC--KEDAPVLKLHLHEHDNS 311 (735)
T ss_pred eEEeeeccccceeeeEEeccCceEEE--eeCCCcceEEecCCCCcEEecccCCchhheEee--cCCCchhhhhhccccCC
Confidence 99999999999999999999999988 666888899999999999999999865444444 46678888888755544
Q ss_pred EEEeC-CCcEEEEEccccc
Q psy17863 311 IMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 311 l~~~~-d~~i~vw~~~~~~ 328 (341)
+-+++ |+.|+-|..+...
T Consensus 312 ~WvtTtds~I~rW~~~~~~ 330 (735)
T KOG0308|consen 312 VWVTTTDSSIKRWKLEPDI 330 (735)
T ss_pred ceeeeccccceecCCcccc
Confidence 44555 9999999887654
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=234.79 Aligned_cols=237 Identities=19% Similarity=0.277 Sum_probs=188.2
Q ss_pred eCCcEEEEEEcc-CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEec-CCCEEEEecCCCcEEEEECCCCce
Q psy17863 12 KQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC-DSSQIASGASDKSVILWEVTTGQP 89 (341)
Q Consensus 12 h~~~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~ 89 (341)
+...|.+++|+| ++.+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|++||+.+++.
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS 610 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence 346799999987 478999999999999999999999999999999999999997 788999999999999999999988
Q ss_pred eeeecccCccEEEEEEc-CCCcEEEEecCCCeEEEEEecCCCC---------cCeEEeecCCCceEEEeeccCeEEEEEc
Q psy17863 90 VRRWREHASKVTCVKFN-EDSSVVISGSQDNTVMMWDVKSRSH---------HPIQCCLDSKDSQIFCGSSDGKIYKWQL 159 (341)
Q Consensus 90 ~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~i~~~d~ 159 (341)
+..+..+ ..+.++.|+ +++.+|++|+.||.|++||++.... ..+..+.+.++..+++++.|++|++||+
T Consensus 611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeC
Confidence 8888754 679999995 5799999999999999999976431 2444555567778999999999999998
Q ss_pred cCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccc
Q psy17863 160 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKAT 239 (341)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 239 (341)
+....... ...+..+ ..|...+..++|+|++.+|++|+.|+.|++|+...
T Consensus 690 ~~~~~~~~------~~~l~~~------------------------~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 690 SMSISGIN------ETPLHSF------------------------MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred CCCccccC------CcceEEE------------------------cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 75321000 0000000 01345678889999999999999999999999765
Q ss_pred cceeeee-------------cCcccceeEEEEEeCCCCCEEEEecCCCcEEEEee
Q psy17863 240 GELLEEY-------------KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 281 (341)
Q Consensus 240 ~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (341)
..++..+ ..+...+..+ +|++++..|++|+.||.|+||++
T Consensus 740 ~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v--~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 740 PMPVLSYKFKTIDPVSGLEVDDASQFISSV--CWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCceEEEecccCCcccccccCCCCcEEEEE--EEcCCCCeEEEecCCCcEEEEec
Confidence 5433222 2233445555 89999999999999999999986
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=222.12 Aligned_cols=243 Identities=16% Similarity=0.312 Sum_probs=178.4
Q ss_pred eeEec-CcccceeEEEEecCCCEEEEecCCCcEEEEECCCCc--------------------------------------
Q psy17863 48 LKTYG-GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ-------------------------------------- 88 (341)
Q Consensus 48 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------------------------------------- 88 (341)
.+.+. .|.+.|.++.|++||+|||+|+.|+.|+||.+...+
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34455 899999999999999999999999999999986511
Q ss_pred ----------------------eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEE
Q psy17863 89 ----------------------PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIF 146 (341)
Q Consensus 89 ----------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 146 (341)
+++.+.+|.+.|.++.|+.+ ++|++++.|.+|++|
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLW---------------------- 395 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLW---------------------- 395 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEee----------------------
Confidence 22233445555555555542 245555555555555
Q ss_pred EeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECC-CCceEEEeC-CCceEEEEccccc------CCCCeEEEEEcc
Q psy17863 147 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP-TRKHIMSAC-GNNVKLWTAEEDY------GQEPIVDACFTR 218 (341)
Q Consensus 147 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~i~~~~~~~~~------~~~~i~~~~~~~ 218 (341)
++...+++..+. |...|++++|+| |.+++++|+ |+.++||++.... -..-|++++|.|
T Consensus 396 -----------h~~~~~CL~~F~---HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~P 461 (712)
T KOG0283|consen 396 -----------HPGRKECLKVFS---HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSP 461 (712)
T ss_pred -----------cCCCcceeeEEe---cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEecc
Confidence 444555555554 556799999999 456777777 7999999987754 558899999999
Q ss_pred CCCEEEEeecCCeEEEEeccccceeeeecC--c------ccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEE
Q psy17863 219 DCQCILTCSTDECLRLFDKATGELLEEYKG--H------KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 290 (341)
Q Consensus 219 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 290 (341)
||+..++|+.+|..++|+....+....+.- | ...|+.+.+..... ..+++.+.|..|+|+|.++..++.++
T Consensus 462 dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~-~~vLVTSnDSrIRI~d~~~~~lv~Kf 540 (712)
T KOG0283|consen 462 DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDP-DEVLVTSNDSRIRIYDGRDKDLVHKF 540 (712)
T ss_pred CCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCC-CeEEEecCCCceEEEeccchhhhhhh
Confidence 999999999999999999887665444321 1 12688885443322 25777788999999999999999888
Q ss_pred EeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 291 IHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 291 ~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
+.......-....|+.||++|++++ |..|++|+.+...
T Consensus 541 KG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 541 KGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred cccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 8323333445678999999999999 9999999985543
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-30 Score=213.98 Aligned_cols=313 Identities=12% Similarity=0.227 Sum_probs=243.6
Q ss_pred CcEEEEEEccC--CCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceee
Q psy17863 14 GAIRAVRFNVD--GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVR 91 (341)
Q Consensus 14 ~~v~~~~~~~~--~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 91 (341)
+.|+++. +|. -+.++.|+.+|.+.+|++.+++.+.+++++...|+++.=+|--..++.|..+|+|.++++..++.+.
T Consensus 160 ~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~ 238 (910)
T KOG1539|consen 160 DFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILM 238 (910)
T ss_pred CceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEE
Confidence 3377765 443 3678999999999999999999999999999999999999988899999999999999999999999
Q ss_pred eecccCccEEEEEEcCCCc-EEEEecCCCeEEEEEecCCCCcCeE----------EeecCCCceEEEeeccCeEEEE---
Q psy17863 92 RWREHASKVTCVKFNEDSS-VVISGSQDNTVMMWDVKSRSHHPIQ----------CCLDSKDSQIFCGSSDGKIYKW--- 157 (341)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~i~~~--- 157 (341)
+++...+.|+.++|..||. .+++++..|.+.+||++..+...+. ....+....+++.+.|+.+++|
T Consensus 239 sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 239 SFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred EEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEee
Confidence 9995569999999999887 4566777799999999875521111 1111222233333333333333
Q ss_pred --------------------------------------------------------------------------------
Q psy17863 158 -------------------------------------------------------------------------------- 157 (341)
Q Consensus 158 -------------------------------------------------------------------------------- 157 (341)
T Consensus 319 ~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i 398 (910)
T KOG1539|consen 319 SGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI 398 (910)
T ss_pred CCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence
Q ss_pred -----------------------------EccCCcceeeeEeee----cCceEEEEEECCCCceEEEeCC-CceEEEEcc
Q psy17863 158 -----------------------------QLVDSSQISTLIHSV----GKAVVNSLCSHPTRKHIMSACG-NNVKLWTAE 203 (341)
Q Consensus 158 -----------------------------d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~ 203 (341)
+.++...-.....+. ....+.+++.++.|++.+.+.. |.|.+|++.
T Consensus 399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ 478 (910)
T KOG1539|consen 399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ 478 (910)
T ss_pred eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc
Confidence 222211100000000 1134778899999999888875 899999987
Q ss_pred ccc----------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCC
Q psy17863 204 EDY----------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD 273 (341)
Q Consensus 204 ~~~----------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 273 (341)
.+. |..+|+.++...-++.+++++.+|.+.+||.....++..++-. ..+..+ ..+.....++.+..|
T Consensus 479 SGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-~~~~~i--v~hr~s~l~a~~~dd 555 (910)
T KOG1539|consen 479 SGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-SSITGI--VYHRVSDLLAIALDD 555 (910)
T ss_pred cCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-CCccee--eeeehhhhhhhhcCc
Confidence 643 7789999999999999999999999999999988877777633 233444 566667789999999
Q ss_pred CcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCcc
Q psy17863 274 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQAG 332 (341)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~~ 332 (341)
-.|+++|..+.+.++.+. +|.+.|++++|||||++|++++ |++|++||+.++.....
T Consensus 556 f~I~vvD~~t~kvvR~f~--gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~ 613 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVREFW--GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG 613 (910)
T ss_pred eeEEEEEchhhhhhHHhh--ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeee
Confidence 999999999999999999 9999999999999999999999 99999999998865543
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=204.86 Aligned_cols=242 Identities=20% Similarity=0.332 Sum_probs=202.3
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec-CcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-GHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
|+..-.+--|..+|.|+.|+.|...||+|+.||.|++|.+.+|.+++.|. .|+..|+|+.|+.|+..+++++.|.++++
T Consensus 253 YQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRi 332 (508)
T KOG0275|consen 253 YQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRI 332 (508)
T ss_pred hhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEE
Confidence 44445566789999999999999999999999999999999999999996 89999999999999999999999999999
Q ss_pred EECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC----------cCeE-Eeec-CCCceEEEee
Q psy17863 82 WEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH----------HPIQ-CCLD-SKDSQIFCGS 149 (341)
Q Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------~~~~-~~~~-~~~~~~~~~~ 149 (341)
.-+.+|+++..+++|.+.|+...|+++|..+++++.||+|++|+.++.++ .++. .... .+...++++.
T Consensus 333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN 412 (508)
T KOG0275|consen 333 HGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN 412 (508)
T ss_pred eccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc
Confidence 99999999999999999999999999999999999999999999887552 1111 1111 2234666777
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecC
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTD 229 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 229 (341)
..+++++.++.. +.++.+... ....+...+.+++|.|.++.+.++|
T Consensus 413 rsntv~imn~qG-QvVrsfsSG---------------------------------kREgGdFi~~~lSpkGewiYcigED 458 (508)
T KOG0275|consen 413 RSNTVYIMNMQG-QVVRSFSSG---------------------------------KREGGDFINAILSPKGEWIYCIGED 458 (508)
T ss_pred CCCeEEEEeccc-eEEeeeccC---------------------------------CccCCceEEEEecCCCcEEEEEccC
Confidence 777777766543 112222111 1124556677899999999999999
Q ss_pred CeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEe
Q psy17863 230 ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 280 (341)
Q Consensus 230 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (341)
+.++.|...+|++.+.+..|...+..+ +-+|..+.+|+-++||.+++|.
T Consensus 459 ~vlYCF~~~sG~LE~tl~VhEkdvIGl--~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 459 GVLYCFSVLSGKLERTLPVHEKDVIGL--THHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cEEEEEEeecCceeeeeeccccccccc--ccCcccchhhhhcccchhhhcC
Confidence 999999999999999999999888777 7889999999999999999995
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=189.65 Aligned_cols=242 Identities=17% Similarity=0.260 Sum_probs=201.1
Q ss_pred eEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceee--eecccCccEEEEEEcC-CCcEEEEecCCCeEEEEE
Q psy17863 49 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVR--RWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWD 125 (341)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd 125 (341)
+.+++|...+.+++|+.+|..|++|+.|+++.+|+++..+... ..++|.+.|-.++|+| +...+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 4567899999999999999999999999999999998875544 3467999999999988 677899999999999999
Q ss_pred ecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccc
Q psy17863 126 VKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEE 204 (341)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~ 204 (341)
++..+. ...... ...-..+.|+|++.+++++.. +.|...|.++
T Consensus 94 ~r~~k~---------------------------------~~~i~~---~~eni~i~wsp~g~~~~~~~kdD~it~id~r~ 137 (313)
T KOG1407|consen 94 IRSGKC---------------------------------TARIET---KGENINITWSPDGEYIAVGNKDDRITFIDART 137 (313)
T ss_pred eccCcE---------------------------------EEEeec---cCcceEEEEcCCCCEEEEecCcccEEEEEecc
Confidence 887652 111111 112345678888888887774 7777777765
Q ss_pred cc------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEE
Q psy17863 205 DY------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYK 278 (341)
Q Consensus 205 ~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 278 (341)
.. ....+..++|+.++.+++.....|.|.|......+++..+++|.....++ .|+|+|+++|+|+.|..+.+
T Consensus 138 ~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI--~f~p~GryfA~GsADAlvSL 215 (313)
T KOG1407|consen 138 YKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICI--EFDPDGRYFATGSADALVSL 215 (313)
T ss_pred cceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEE--EECCCCceEeeccccceeec
Confidence 43 45667889999888888888888999999999999999999999765555 99999999999999999999
Q ss_pred EeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 279 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 279 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
||+...-+++.+. .+.-+|+.+.||.||++||+++ |..|-|=+++++...
T Consensus 216 WD~~ELiC~R~is--RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 216 WDVDELICERCIS--RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV 266 (313)
T ss_pred cChhHhhhheeec--cccCceEEEEeccCcceeeccCccceEEeEecccCCeE
Confidence 9999999999988 7889999999999999999999 999887777766543
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-31 Score=194.72 Aligned_cols=284 Identities=16% Similarity=0.284 Sum_probs=212.6
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEEC
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 84 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 84 (341)
+-++|+. .. -.|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|++||+.|++++.|..|.+||+
T Consensus 17 l~~tld~-~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl 94 (405)
T KOG1273|consen 17 LTHTLDN-PL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDL 94 (405)
T ss_pred hceeccC-Cc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEec
Confidence 3445552 22 789999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred CCCceeeeecccCccEEEEEEcCCC-cEEEEecCCCeEEEEEecCCCC-------------cCeEEeecCCCceEEEeec
Q psy17863 85 TTGQPVRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSH-------------HPIQCCLDSKDSQIFCGSS 150 (341)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 150 (341)
..|.+++.++ ..++|+.+.|+|.. +..++.-.+..-.+-++..+.+ ..-...+...+.++++|..
T Consensus 95 ~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts 173 (405)
T KOG1273|consen 95 LKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS 173 (405)
T ss_pred cCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC
Confidence 9999998887 67899999999933 2222222233333444432211 1111134455668888888
Q ss_pred cCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCC
Q psy17863 151 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDE 230 (341)
Q Consensus 151 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 230 (341)
.|.+.++|..+.+.+..+.... -..|..+.++..|++|+.-+.|.
T Consensus 174 KGkllv~~a~t~e~vas~rits-----------------------------------~~~IK~I~~s~~g~~liiNtsDR 218 (405)
T KOG1273|consen 174 KGKLLVYDAETLECVASFRITS-----------------------------------VQAIKQIIVSRKGRFLIINTSDR 218 (405)
T ss_pred cceEEEEecchheeeeeeeech-----------------------------------heeeeEEEEeccCcEEEEecCCc
Confidence 8888888887766554443211 13577888899999999999999
Q ss_pred eEEEEecccc---------ceeeeecCcccceeEEEEEeCCCCCEEEEecC-CCcEEEEeeeCCCceEEEEeeeec-cce
Q psy17863 231 CLRLFDKATG---------ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSVGK-AVV 299 (341)
Q Consensus 231 ~i~i~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~-~~v 299 (341)
.||.|+++.- ++.++++.--+...--.|+|+.+|.|+++++. ...++||.-..|.+++.+. +.. ...
T Consensus 219 vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh--G~kgE~l 296 (405)
T KOG1273|consen 219 VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH--GTKGEEL 296 (405)
T ss_pred eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec--CCchhhe
Confidence 9999997621 11223322222222334689999999888764 4679999999999998887 444 678
Q ss_pred EEEEEcCCCcEEEEeCCCcEEEEEccccc
Q psy17863 300 NSLCSHPTRKHIMSACGNNVKLWTAEEDY 328 (341)
Q Consensus 300 ~~~~~~~~~~~l~~~~d~~i~vw~~~~~~ 328 (341)
..+.|+|-...+++-..|.+++|......
T Consensus 297 ~DV~whp~rp~i~si~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 297 LDVNWHPVRPIIASIASGVVYIWAVVQVE 325 (405)
T ss_pred eecccccceeeeeeccCCceEEEEeeccc
Confidence 88999999999988889999999876543
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-31 Score=225.54 Aligned_cols=251 Identities=21% Similarity=0.283 Sum_probs=201.6
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC------------------cceeeEecCcccceeEEEEec
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR------------------NLLLKTYGGHAHEVNDATAAC 65 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~------------------~~~~~~~~~~~~~v~~~~~~~ 65 (341)
+.+.++..|.+.|+|+.|+|||++||+|++|+.|.||.... .+....+.+|...|..++|+|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 45677888999999999999999999999999999998652 135677889999999999999
Q ss_pred CCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceE
Q psy17863 66 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQI 145 (341)
Q Consensus 66 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 145 (341)
++.+|++++.|++|.+||..+.+.+..+++|.+.|..+.|.|-|++|++-+.|++|++|++..-......
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~I---------- 209 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSI---------- 209 (942)
T ss_pred CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEee----------
Confidence 9999999999999999999999999999999999999999999999999999999999996542100000
Q ss_pred EEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-----CceEEEEccc-----c--cCCCCeEE
Q psy17863 146 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-----NNVKLWTAEE-----D--YGQEPIVD 213 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~-----~--~~~~~i~~ 213 (341)
...+........+..+.|+|+|++|++... ..+.|.+-.+ . .|..++.+
T Consensus 210 -------------------t~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~ev 270 (942)
T KOG0973|consen 210 -------------------TKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEV 270 (942)
T ss_pred -------------------ccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEE
Confidence 001111223345789999999999998753 3566654432 2 28899999
Q ss_pred EEEccC-----CC------------EEEEeecCCeEEEEeccccceeeeecC-cccceeEEEEEeCCCCCEEEEecCCCc
Q psy17863 214 ACFTRD-----CQ------------CILTCSTDECLRLFDKATGELLEEYKG-HKSGDFRIECCLDSKDSQIFCGSSDGK 275 (341)
Q Consensus 214 ~~~~~~-----~~------------~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~ 275 (341)
+.|+|. .+ .+++|+.|++|.||.....+++..... ....|..+ +|+|||..|++++.||+
T Consensus 271 vrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~Dm--sWspdG~~LfacS~DGt 348 (942)
T KOG0973|consen 271 VRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDM--SWSPDGFSLFACSLDGT 348 (942)
T ss_pred EEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeee--eEcCCCCeEEEEecCCe
Confidence 999981 11 678999999999999877777654432 23445545 99999999999999999
Q ss_pred EEEEeeeCCC
Q psy17863 276 IYKWQLVDSS 285 (341)
Q Consensus 276 i~iwd~~~~~ 285 (341)
|.+..++..+
T Consensus 349 V~~i~Fee~E 358 (942)
T KOG0973|consen 349 VALIHFEEKE 358 (942)
T ss_pred EEEEEcchHH
Confidence 9999987643
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.5e-30 Score=195.06 Aligned_cols=242 Identities=20% Similarity=0.351 Sum_probs=190.9
Q ss_pred CceeeeEEeeeCCcEEEEEEccC---CCEEEEEeCCCeEEEEcCCCcce----eeEecCcccceeEEEEecCCCEEEEec
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVD---GSYCLTCGSDKKIKLWNPYRNLL----LKTYGGHAHEVNDATAACDSSQIASGA 74 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~---~~~l~t~~~dg~i~iw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~ 74 (341)
..++++++.||.++|.+++|-.. ...|++++.|.++++|.++.++. +..-++|...|.++...+++..+++|+
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS 212 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS 212 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec
Confidence 45788999999999998888543 33699999999999998876643 233459999999999999999999999
Q ss_pred CCCcEEEEECCC-------------------------CceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCC
Q psy17863 75 SDKSVILWEVTT-------------------------GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR 129 (341)
Q Consensus 75 ~dg~i~iw~~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 129 (341)
.|.+|.+|+.++ +.++..+.+|..+|.++.|.+ ...+++++.|.+|+.||+.++
T Consensus 213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecc
Confidence 999999999321 235667789999999999998 678999999999999999987
Q ss_pred CC-------cCeEEee-cCCCceEEEeeccCeEEEEEccCCcce-eeeEeeecCceEEEEEECCCCceEEEeCCCceEEE
Q psy17863 130 SH-------HPIQCCL-DSKDSQIFCGSSDGKIYKWQLVDSSQI-STLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 200 (341)
Q Consensus 130 ~~-------~~~~~~~-~~~~~~~~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 200 (341)
.. ..+.+.. .+....+++|+.|..+++||.+++.-. .......+
T Consensus 292 ~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH--------------------------- 344 (423)
T KOG0313|consen 292 GLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH--------------------------- 344 (423)
T ss_pred cceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc---------------------------
Confidence 63 2333333 344568899999999999999986432 12222222
Q ss_pred EcccccCCCCeEEEEEccCC-CEEEEeecCCeEEEEeccccc-eeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEE
Q psy17863 201 TAEEDYGQEPIVDACFTRDC-QCILTCSTDECLRLFDKATGE-LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYK 278 (341)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 278 (341)
...|.++.|+|.. ..|++++.|+++++||+++.+ ++..+.+|...+.++ .|. ++.++++|+.|.+|+|
T Consensus 345 -------~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~v--dW~-~~~~IvSGGaD~~l~i 414 (423)
T KOG0313|consen 345 -------KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSV--DWN-EGGLIVSGGADNKLRI 414 (423)
T ss_pred -------hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEE--ecc-CCceEEeccCcceEEE
Confidence 3345555566533 348899999999999999887 899999999998887 444 4669999999999999
Q ss_pred Eee
Q psy17863 279 WQL 281 (341)
Q Consensus 279 wd~ 281 (341)
+.-
T Consensus 415 ~~~ 417 (423)
T KOG0313|consen 415 FKG 417 (423)
T ss_pred ecc
Confidence 874
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.7e-30 Score=215.92 Aligned_cols=243 Identities=26% Similarity=0.464 Sum_probs=204.3
Q ss_pred ceeeeE-EeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 3 YTCVQT-IDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 3 ~~~~~~-l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
...+.. +.+|.+.|.+++|..-+.+|++|+.|.++++||..++++...+.+|...|.++... +.++++|+.|.+|++
T Consensus 238 ~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkV 315 (537)
T KOG0274|consen 238 GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKV 315 (537)
T ss_pred ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEE
Confidence 344555 99999999999998778899999999999999999999999999999999998875 557888999999999
Q ss_pred EECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------CcCeEEeecCCCceEEEeeccCe
Q psy17863 82 WEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCLDSKDSQIFCGSSDGK 153 (341)
Q Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~ 153 (341)
|+++++..+..+.+|.++|.++..+ +.++++|+.|+.|++||+.+.+ ...+..+.......+++|+.|+.
T Consensus 316 W~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~ 393 (537)
T KOG0274|consen 316 WDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTT 393 (537)
T ss_pred EeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccc
Confidence 9999999999999999999999998 7799999999999999998654 23344443333389999999999
Q ss_pred EEEEEccCC-cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeE
Q psy17863 154 IYKWQLVDS-SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232 (341)
Q Consensus 154 i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 232 (341)
|++||+++. +++..+..+..- + -.+...+++|++++.|++|
T Consensus 394 IkvWdl~~~~~c~~tl~~h~~~------------------------------------v--~~l~~~~~~Lvs~~aD~~I 435 (537)
T KOG0274|consen 394 IKVWDLRTKRKCIHTLQGHTSL------------------------------------V--SSLLLRDNFLVSSSADGTI 435 (537)
T ss_pred eEeecCCchhhhhhhhcCCccc------------------------------------c--cccccccceeEeccccccE
Confidence 999999998 666666543221 1 1233456789999999999
Q ss_pred EEEeccccceeeeecC-cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 233 RLFDKATGELLEEYKG-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 233 ~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
++||..++++++++.+ |...+..+ +.. ...+++++.||++++||++++++...+.
T Consensus 436 k~WD~~~~~~~~~~~~~~~~~v~~l--~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~ 491 (537)
T KOG0274|consen 436 KLWDAEEGECLRTLEGRHVGGVSAL--ALG--KEEILCSSDDGSVKLWDLRSGTLIRTLL 491 (537)
T ss_pred EEeecccCceeeeeccCCcccEEEe--ecC--cceEEEEecCCeeEEEecccCchhhhhh
Confidence 9999999999999998 56777766 333 4689999999999999999999888774
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-29 Score=205.57 Aligned_cols=322 Identities=15% Similarity=0.221 Sum_probs=248.1
Q ss_pred CceeeeEEeeeCCcEEEEEEccCCC---EEEEEeCCCeEEEEcCCCcc---------------------ee---------
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDGS---YCLTCGSDKKIKLWNPYRNL---------------------LL--------- 48 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~~---~l~t~~~dg~i~iw~~~~~~---------------------~~--------- 48 (341)
.|+.+.+++||.+.|.+++|...+. +||+++.|..||||.+.-+. ..
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 3678889999999999999987554 88999999999999743211 11
Q ss_pred -eEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCce-------eeeecccCccEEEEEEcCCCcEEEEecCCCe
Q psy17863 49 -KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP-------VRRWREHASKVTCVKFNEDSSVVISGSQDNT 120 (341)
Q Consensus 49 -~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 120 (341)
..+.+|...|+++.|+|.+..|++++.|.++.+|...+..- +....+.........|+|+++.+++-+..|.
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 11238999999999999999999999999999999765421 1222334556889999999999999999999
Q ss_pred EEEEEecCC-----------CCcCeE-EeecCCCceEEEeeccCeEEEEEccCCcc-eeee-EeeecCceEEEEEECCCC
Q psy17863 121 VMMWDVKSR-----------SHHPIQ-CCLDSKDSQIFCGSSDGKIYKWQLVDSSQ-ISTL-IHSVGKAVVNSLCSHPTR 186 (341)
Q Consensus 121 i~iwd~~~~-----------~~~~~~-~~~~~~~~~~~~~~~~g~i~~~d~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~ 186 (341)
.++|..+.. ....+. ....+.+.++++.+.|.+-++|-.-..+. -..+ ....+.....++++-+..
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~ 419 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED 419 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence 999983331 112222 33455677999999999999987652221 1111 122234457888888855
Q ss_pred ceEEEeCC-CceEEEEcccc------------------------------------------------------------
Q psy17863 187 KHIMSACG-NNVKLWTAEED------------------------------------------------------------ 205 (341)
Q Consensus 187 ~~~~~~~~-~~i~~~~~~~~------------------------------------------------------------ 205 (341)
..++++.+ ..+++|+....
T Consensus 420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~ 499 (764)
T KOG1063|consen 420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE 499 (764)
T ss_pred ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence 55555554 66788765320
Q ss_pred -----------------------cCCCCeEEEEEccCCCEEEEeecCC-----eEEEEeccccceeeeecCcccceeEEE
Q psy17863 206 -----------------------YGQEPIVDACFTRDCQCILTCSTDE-----CLRLFDKATGELLEEYKGHKSGDFRIE 257 (341)
Q Consensus 206 -----------------------~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~ 257 (341)
.|...|.+++.+|+++++++++... .|++|+..+......+.+|+-.|+.+
T Consensus 500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l- 578 (764)
T KOG1063|consen 500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL- 578 (764)
T ss_pred ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE-
Confidence 0556799999999999999988754 59999999999999999999998888
Q ss_pred EEeCCCCCEEEEecCCCcEEEEeeeCCCc----eEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccc
Q psy17863 258 CCLDSKDSQIFCGSSDGKIYKWQLVDSSQ----ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 258 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~ 327 (341)
+|+|||++|++.+.|.++.+|....... ....+ .|...|.+..|+|++++++|++ |.+|+||..++.
T Consensus 579 -~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k--~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 579 -AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLK--AHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred -EECCCCcEEEEeecCceEEeeeeecccchhhhhcccc--ccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9999999999999999999999755422 12234 7999999999999999999999 999999998876
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-30 Score=187.40 Aligned_cols=263 Identities=21% Similarity=0.278 Sum_probs=197.2
Q ss_pred EeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCc---ceeeEecCcccceeEEEEec--CCCEEEEecCCCcEEEEE
Q psy17863 9 IDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN---LLLKTYGGHAHEVNDATAAC--DSSQIASGASDKSVILWE 83 (341)
Q Consensus 9 l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~ 83 (341)
-..|.+.|..+...--|++|||+++|++|+|+...++ +++.++.+|.++|..++|.. -|.+|++++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 3569999999998888999999999999999998764 46788999999999999965 789999999999999999
Q ss_pred CCCCce--eeeecccCccEEEEEEcC--CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEc
Q psy17863 84 VTTGQP--VRRWREHASKVTCVKFNE--DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQL 159 (341)
Q Consensus 84 ~~~~~~--~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~ 159 (341)
-++++- ......|...|++++|.| -|-.|++++.||.|.+.+.+.... |+.
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~-------------------------w~t 141 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG-------------------------WTT 141 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC-------------------------ccc
Confidence 888743 345567999999999988 567899999999999988876420 110
Q ss_pred cCCcceeeeEeeecCceEEEEEECCC---CceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEe
Q psy17863 160 VDSSQISTLIHSVGKAVVNSLCSHPT---RKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFD 236 (341)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 236 (341)
. .....+...+++++|.|. |..+-.+ + ...-+.|++|+.|..|+||+
T Consensus 142 ~-------ki~~aH~~GvnsVswapa~~~g~~~~~~-----------------~------~~~~krlvSgGcDn~VkiW~ 191 (299)
T KOG1332|consen 142 S-------KIVFAHEIGVNSVSWAPASAPGSLVDQG-----------------P------AAKVKRLVSGGCDNLVKIWK 191 (299)
T ss_pred h-------hhhhccccccceeeecCcCCCccccccC-----------------c------ccccceeeccCCccceeeee
Confidence 0 011113344667777665 2211000 0 00125699999999999999
Q ss_pred cccc--ceeeeecCcccceeEEEEEeCC--CCCEEEEecCCCcEEEEeeeCC-Cc-eEEEEeeeeccceEEEEEcCCCcE
Q psy17863 237 KATG--ELLEEYKGHKSGDFRIECCLDS--KDSQIFCGSSDGKIYKWQLVDS-SQ-ISTLIHSVGKAVVNSLCSHPTRKH 310 (341)
Q Consensus 237 ~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~-~~-~~~~~~~~~~~~v~~~~~~~~~~~ 310 (341)
..++ +.-+.+++|..-+..++++++- ...+||+++.||++.||..... +. ..++.. .....+..+.||+.|..
T Consensus 192 ~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~-~f~~~~w~vSWS~sGn~ 270 (299)
T KOG1332|consen 192 FDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLE-EFPDVVWRVSWSLSGNI 270 (299)
T ss_pred cCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccc-cCCcceEEEEEeccccE
Confidence 8775 3445689999999888444332 1246999999999999987632 11 122221 45678999999999999
Q ss_pred EEEeC-CCcEEEEEcccc
Q psy17863 311 IMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 311 l~~~~-d~~i~vw~~~~~ 327 (341)
|+.++ |+.|.+|.-+.+
T Consensus 271 LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 271 LAVSGGDNKVTLWKENVD 288 (299)
T ss_pred EEEecCCcEEEEEEeCCC
Confidence 99999 999999986544
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-28 Score=191.09 Aligned_cols=314 Identities=13% Similarity=0.225 Sum_probs=240.1
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCC--------eEEEEcCCCcceeeEecCcccceeEEEEec--CCCEEEEe--
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDK--------KIKLWNPYRNLLLKTYGGHAHEVNDATAAC--DSSQIASG-- 73 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg--------~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-- 73 (341)
.+.+.+|+..|.|++.+||.-.+++|-..| .+++||..+...+..+......|.|++|++ .|.+++.-
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~ 176 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDD 176 (626)
T ss_pred cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecC
Confidence 455678999999999999998888765544 599999888888888887888999999998 34555554
Q ss_pred cCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC------------CcCeEEeecCC
Q psy17863 74 ASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS------------HHPIQCCLDSK 141 (341)
Q Consensus 74 ~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------------~~~~~~~~~~~ 141 (341)
+.+..+.+||.+.+......+..+..|....|+|...-++.....+.+.+|+++.+. ...+.++.+.+
T Consensus 177 s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~e 256 (626)
T KOG2106|consen 177 SNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLE 256 (626)
T ss_pred CCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcC
Confidence 445678999999988888888788899999999955555555557899999987643 34567788899
Q ss_pred CceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc---------------
Q psy17863 142 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY--------------- 206 (341)
Q Consensus 142 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------- 206 (341)
++.+++|.++|.|.+|+....+..+... .+...|.+++...+|.++..+-|..|..||-.-..
T Consensus 257 ngdviTgDS~G~i~Iw~~~~~~~~k~~~--aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRt 334 (626)
T KOG2106|consen 257 NGDVITGDSGGNILIWSKGTNRISKQVH--AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRT 334 (626)
T ss_pred CCCEEeecCCceEEEEeCCCceEEeEee--ecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeE
Confidence 9999999999999999997766655554 56677999999999998885556788888732100
Q ss_pred --------------------------------CCCCeEEEEEccCCCEEEEeecCCeEEEEec-----------------
Q psy17863 207 --------------------------------GQEPIVDACFTRDCQCILTCSTDECLRLFDK----------------- 237 (341)
Q Consensus 207 --------------------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~----------------- 237 (341)
|......++.+|+.+.+++++.|+.+++|+-
T Consensus 335 v~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~ 414 (626)
T KOG2106|consen 335 VAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECAD 414 (626)
T ss_pred EecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEee
Confidence 3344556667777777777777777777762
Q ss_pred ---------------------cccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeec
Q psy17863 238 ---------------------ATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK 296 (341)
Q Consensus 238 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 296 (341)
++...+..-. ...++..+ .++|+|.+||.|+.|+.|+||.+.............+.
T Consensus 415 fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v--~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 415 FHPSGVVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVV--RYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred ccCcceEEEeeccceEEEEecccceeEEEEe-cCCceEEE--EEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence 2211221111 24555655 89999999999999999999999876555444433455
Q ss_pred cceEEEEEcCCCcEEEEeC-CCcEEEEEc
Q psy17863 297 AVVNSLCSHPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 297 ~~v~~~~~~~~~~~l~~~~-d~~i~vw~~ 324 (341)
.+|+.+.||+|+++|.+-+ |-.|..|..
T Consensus 492 s~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 492 SPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred ceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 8999999999999999999 999999943
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=193.23 Aligned_cols=310 Identities=15% Similarity=0.233 Sum_probs=240.6
Q ss_pred EEeeeC-CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC
Q psy17863 8 TIDCKQ-GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 8 ~l~~h~-~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 86 (341)
.++.+. .-|.|++|.++|. ++||.++|.|.||+..+.+..+....|.+.|.++....+|.+| +|+.|..|..||-.-
T Consensus 240 ~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y 317 (626)
T KOG2106|consen 240 IFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNY 317 (626)
T ss_pred ccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccc
Confidence 344433 6799999999996 8899999999999998887777777999999999999998654 599999999998321
Q ss_pred Cc----------------------------------------eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEe
Q psy17863 87 GQ----------------------------------------PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126 (341)
Q Consensus 87 ~~----------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 126 (341)
.+ ......+|....+.++.+|+.+++++++.|+.+++|+-
T Consensus 318 ~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~ 397 (626)
T KOG2106|consen 318 RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWND 397 (626)
T ss_pred cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccC
Confidence 00 01112468889999999999999999999999999992
Q ss_pred cCCC-----CcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEE
Q psy17863 127 KSRS-----HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLW 200 (341)
Q Consensus 127 ~~~~-----~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~ 200 (341)
.... ..+..+..+++.+.++.|+..|...+.|.++...+... . ...+++.+.++|+|.+++.++ ++.|++|
T Consensus 398 ~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~-~--d~~~ls~v~ysp~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 398 HKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIH-T--DNEQLSVVRYSPDGAFLAVGSHDNHIYIY 474 (626)
T ss_pred CceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEE-e--cCCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence 2111 34566777788889999999999999999884433322 2 367899999999999999998 5899999
Q ss_pred Eccccc---------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeec------------------Ccccce
Q psy17863 201 TAEEDY---------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK------------------GHKSGD 253 (341)
Q Consensus 201 ~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------------------~~~~~~ 253 (341)
.+..+. +..+|+.+.|++|++++.+-+.|-.|..|....-+.....+ .+...+
T Consensus 475 ~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i 554 (626)
T KOG2106|consen 475 RVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDI 554 (626)
T ss_pred EECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchH
Confidence 988754 55899999999999999999999999999543222211111 122223
Q ss_pred eEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE-eeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEc
Q psy17863 254 FRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI-HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~ 324 (341)
..+ +-+...+++|+|...|+|++|...-.++...+. ..+|...|++++|..+...|++.+ |.+|..|++
T Consensus 555 ~a~--~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 555 NAV--ARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred HHh--hhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 222 556777899999999999999875444332221 228899999999999999999988 999999986
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=182.51 Aligned_cols=225 Identities=19% Similarity=0.309 Sum_probs=198.0
Q ss_pred EecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCC
Q psy17863 50 TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR 129 (341)
Q Consensus 50 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 129 (341)
.+++|..+++.+.++.+|.+|++++.|.+..+|-..+|+.+.++.+|.+.|+|+..+-+.+.+++|+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC------CceEEEEcc
Q psy17863 130 SHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG------NNVKLWTAE 203 (341)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~ 203 (341)
+ .+..|+ ...++..+.|++++.+++...+ ..+.+++++
T Consensus 85 k----------------------~la~~k--------------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~ 128 (327)
T KOG0643|consen 85 K----------------------QLATWK--------------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIR 128 (327)
T ss_pred c----------------------EEEEee--------------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEcc
Confidence 6 233333 2346888999999999888765 358888887
Q ss_pred ccc--------------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccc-eeeeecCcccceeEEEEEeCCCCCEEE
Q psy17863 204 EDY--------------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGE-LLEEYKGHKSGDFRIECCLDSKDSQIF 268 (341)
Q Consensus 204 ~~~--------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (341)
... +...++.+.|.|-+++|++|.+||.|..||+++++ .+..-+.|...|..+ .++++..+++
T Consensus 129 ~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~--q~s~d~T~Fi 206 (327)
T KOG0643|consen 129 DDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDL--QFSRDRTYFI 206 (327)
T ss_pred CChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccc--cccCCcceEE
Confidence 432 55788999999999999999999999999999984 456668899999888 8999999999
Q ss_pred EecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC
Q psy17863 269 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 269 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
+++.|.+-++||..+.+.+.++. ...||++.+++|....++.++
T Consensus 207 T~s~Dttakl~D~~tl~v~Kty~---te~PvN~aaisP~~d~VilgG 250 (327)
T KOG0643|consen 207 TGSKDTTAKLVDVRTLEVLKTYT---TERPVNTAAISPLLDHVILGG 250 (327)
T ss_pred ecccCccceeeeccceeeEEEee---ecccccceecccccceEEecC
Confidence 99999999999999999988886 678999999999888887776
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-29 Score=184.56 Aligned_cols=257 Identities=16% Similarity=0.278 Sum_probs=202.5
Q ss_pred EEEEeCCCeEEEEcCCC------------cceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecc
Q psy17863 28 CLTCGSDKKIKLWNPYR------------NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE 95 (341)
Q Consensus 28 l~t~~~dg~i~iw~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 95 (341)
+++|+....|.-+++.- ..++..+..|.++|++++.+ +.++++|+.|-+|+|||+.+...+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec
Confidence 56666666655554321 12355678899999999985 89999999999999999999999999999
Q ss_pred cCccEEEEEEcCCCc--EEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeec
Q psy17863 96 HASKVTCVKFNEDSS--VVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG 173 (341)
Q Consensus 96 ~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 173 (341)
|.+.|+++.|.++-. .|++|+.||.|.+|+... -..+..+.. +
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~---------------------------------W~~~~slK~--H 126 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS---------------------------------WELLKSLKA--H 126 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCC---------------------------------eEEeeeecc--c
Confidence 999999999998654 788888888888887653 223333333 3
Q ss_pred CceEEEEEECCCCceEEEeC-CCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeee
Q psy17863 174 KAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY 246 (341)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 246 (341)
...|+.++++|.+++.++.+ |+.+++|++-++. -...-+.+.|+|.|.+++.+..+ .|-+|.+.+.....++
T Consensus 127 ~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i 205 (362)
T KOG0294|consen 127 KGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREI 205 (362)
T ss_pred ccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhh
Confidence 44599999999999877665 5899999998765 23344559999999999988876 5899998887776665
Q ss_pred cCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEE--cCCCcEEEEeC-CCcEEEEE
Q psy17863 247 KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS--HPTRKHIMSAC-GNNVKLWT 323 (341)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~-d~~i~vw~ 323 (341)
... ..+.+ +..-++..|++|.+|+.|.+||..+..+...+. +|...|.++.+ .|++.+|++++ ||.|+|||
T Consensus 206 ~~~-~r~l~---~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~--AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 206 ENP-KRILC---ATFLDGSELLVGGDNEWISLKDTDSDTPLTEFL--AHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred hcc-cccee---eeecCCceEEEecCCceEEEeccCCCccceeee--cchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 533 22333 233467799999999999999999888888888 99999999984 56789999999 99999999
Q ss_pred ccccc
Q psy17863 324 AEEDY 328 (341)
Q Consensus 324 ~~~~~ 328 (341)
++...
T Consensus 280 ~~~~~ 284 (362)
T KOG0294|consen 280 IDMET 284 (362)
T ss_pred ccccc
Confidence 98763
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-28 Score=196.17 Aligned_cols=268 Identities=12% Similarity=0.120 Sum_probs=196.9
Q ss_pred CCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEE-EEecCCCcEEEEECCCCceeeeecccCccEEEE
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI-ASGASDKSVILWEVTTGQPVRRWREHASKVTCV 103 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~ 103 (341)
++.+++++.|+.|++||+.+++.+..+..+. .+..++|+|+++.+ ++++.++.|++||..+++....+..+.. +..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 3578899999999999999999888887554 46789999999876 5667889999999999888777765443 5678
Q ss_pred EEcCCCcEEEEe-cCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEE
Q psy17863 104 KFNEDSSVVISG-SQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS 182 (341)
Q Consensus 104 ~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 182 (341)
+|+|+++.++++ +.++.+++||+++.+ .+..+. ....+..+++
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~---------------------------------~~~~~~---~~~~~~~~~~ 122 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRK---------------------------------VLAEIP---VGVEPEGMAV 122 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCe---------------------------------EEeEee---CCCCcceEEE
Confidence 999999877655 457888888876532 111111 1122466888
Q ss_pred CCCCceEEEeCC--CceEEEEccccc------CCCCeEEEEEccCCCEEEEe-ecCCeEEEEeccccceeeeecCcc---
Q psy17863 183 HPTRKHIMSACG--NNVKLWTAEEDY------GQEPIVDACFTRDCQCILTC-STDECLRLFDKATGELLEEYKGHK--- 250 (341)
Q Consensus 183 ~~~~~~~~~~~~--~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~--- 250 (341)
+|+++.++++.. ..+..|+..... .......++|+|++++++++ ..++.|++||+++++.+..+..+.
T Consensus 123 ~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~ 202 (300)
T TIGR03866 123 SPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGV 202 (300)
T ss_pred CCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccc
Confidence 999988887765 346667765432 22345678999999988654 468999999999988776654321
Q ss_pred --cceeEEEEEeCCCCCEEEE-ecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEe-C-CCcEEEEEcc
Q psy17863 251 --SGDFRIECCLDSKDSQIFC-GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA-C-GNNVKLWTAE 325 (341)
Q Consensus 251 --~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-d~~i~vw~~~ 325 (341)
.......++++|++++++. .+.++.+.+||..+++....+. +...+.+++|+|++++|+++ . ++.|++||+.
T Consensus 203 ~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 203 HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred ccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 2222334578999998554 4556789999998887766554 44578999999999999886 4 8999999999
Q ss_pred cccCCccc
Q psy17863 326 EDYGQAGL 333 (341)
Q Consensus 326 ~~~~~~~~ 333 (341)
+....+.+
T Consensus 280 ~~~~~~~~ 287 (300)
T TIGR03866 280 ALKVIKSI 287 (300)
T ss_pred CCcEEEEE
Confidence 87654443
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-30 Score=190.81 Aligned_cols=247 Identities=18% Similarity=0.300 Sum_probs=198.8
Q ss_pred eEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC------------C------ceeeeecccCccEEEEEEcCCCc
Q psy17863 49 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT------------G------QPVRRWREHASKVTCVKFNEDSS 110 (341)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~------------~------~~~~~~~~~~~~v~~~~~~~~~~ 110 (341)
..+..|..++.+.+|+|||.++++|+.|..|+|.|++. + -.++++..|.++|+++.|+|...
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 44567999999999999999999999999999999872 1 24677788999999999999999
Q ss_pred EEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEE
Q psy17863 111 VVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 190 (341)
Q Consensus 111 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (341)
.|++++.|++|++||+..... .+.+..-....++.++.|+|.|.+++
T Consensus 186 ILiS~srD~tvKlFDfsK~sa---------------------------------KrA~K~~qd~~~vrsiSfHPsGefll 232 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSA---------------------------------KRAFKVFQDTEPVRSISFHPSGEFLL 232 (430)
T ss_pred eEEeccCCCeEEEEecccHHH---------------------------------HHHHHHhhccceeeeEeecCCCceEE
Confidence 999999999999999875331 01111111334699999999999999
Q ss_pred EeCC-CceEEEEccccc----------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeec-CcccceeEEEE
Q psy17863 191 SACG-NNVKLWTAEEDY----------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK-GHKSGDFRIEC 258 (341)
Q Consensus 191 ~~~~-~~i~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~ 258 (341)
++.+ ..+++||+.+-. |...|+++.+++.|++.++++.||.|++||--+++++.++. .|.+.. ....
T Consensus 233 vgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gse-vcSa 311 (430)
T KOG0640|consen 233 VGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSE-VCSA 311 (430)
T ss_pred EecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCce-eeeE
Confidence 9998 799999998633 78899999999999999999999999999988889988885 454432 2333
Q ss_pred EeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeee---ccceEEEEEcCCCcEEEEeC--CCcEEEEEcccccC
Q psy17863 259 CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG---KAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDYG 329 (341)
Q Consensus 259 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~~~~ 329 (341)
.|..+++++++.+.|..+++|++.+++++......+. ..--+...|+....|++.-. .+.+.-||.++...
T Consensus 312 ~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr 387 (430)
T KOG0640|consen 312 VFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR 387 (430)
T ss_pred EEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh
Confidence 7999999999999999999999999999988873321 22234456777777777766 67788888776543
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=197.86 Aligned_cols=243 Identities=21% Similarity=0.341 Sum_probs=201.7
Q ss_pred eeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCce
Q psy17863 10 DCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP 89 (341)
Q Consensus 10 ~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 89 (341)
++|...|.+++.++||+|||+|+.|..|.||+..+.+.++.+++|.+.|.+++|-.....|++++.|++|++|+++....
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 58999999999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred eeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC-------CcCeEEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 90 VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-------HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
+.++.+|.+.|..+....-++.+-+|+.|+++++|++.... ...+.++.+.++..+++|+.+|.|.+|++.+.
T Consensus 279 vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred HHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeeccc
Confidence 99999999999999998888777778899999999986532 34677888899999999999999999999998
Q ss_pred cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEecccc--
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATG-- 240 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-- 240 (341)
+++......++-.+.. ..-.++..|++++..|...++++|+.+|.|++|-+..+
T Consensus 359 kplf~~~~AHgv~~~~------------------------~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 359 KPLFTSRLAHGVIPEL------------------------DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred CceeEeeccccccCCc------------------------cccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 8887765443321100 00012357899999999999999999999999998876
Q ss_pred --ceeeeecCcccceeEEEEEeCCCCCEEEEe-cCCCcEEEE
Q psy17863 241 --ELLEEYKGHKSGDFRIECCLDSKDSQIFCG-SSDGKIYKW 279 (341)
Q Consensus 241 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iw 279 (341)
+++..+. -.+-|..+ +|+++|+.+++| +....+-=|
T Consensus 415 ~i~~l~~ls-~~GfVNsl--~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 415 AINLLYSLS-LVGFVNSL--AFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred ccceeeecc-cccEEEEE--EEccCCCEEEEeccccccccee
Confidence 3444444 44556666 789999976665 444444334
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=197.22 Aligned_cols=247 Identities=18% Similarity=0.330 Sum_probs=192.2
Q ss_pred eeCCcEEEEEEccCC-CEEEEEeCCCeEEEEcCCCc----------ceeeEecCcccceeEEEEecC-CCEEEEecCCCc
Q psy17863 11 CKQGAIRAVRFNVDG-SYCLTCGSDKKIKLWNPYRN----------LLLKTYGGHAHEVNDATAACD-SSQIASGASDKS 78 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iw~~~~~----------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 78 (341)
.|.+.|+.+.+-|.. ..+|+.+..+.|.|||..+. .+-.++.+|...-+.++|++. .-.|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 499999999999965 46677788999999996532 122367889988889999984 447999999999
Q ss_pred EEEEECCCCc-------eeeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeec
Q psy17863 79 VILWEVTTGQ-------PVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSS 150 (341)
Q Consensus 79 i~iw~~~~~~-------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (341)
|++||+.... +...+.+|...|..++|++ +..++++++.|+.+.|||+++....+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~----------------- 264 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP----------------- 264 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC-----------------
Confidence 9999997542 3456789999999999998 66788899999999999988531100
Q ss_pred cCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEcc-CCCEEEEeecC
Q psy17863 151 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTR-DCQCILTCSTD 229 (341)
Q Consensus 151 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 229 (341)
.... ..|..++.+++|+| ++..||+|+.|
T Consensus 265 --------------~~~~------------------------------------~ah~~~vn~~~fnp~~~~ilAT~S~D 294 (422)
T KOG0264|consen 265 --------------SHSV------------------------------------KAHSAEVNCVAFNPFNEFILATGSAD 294 (422)
T ss_pred --------------cccc------------------------------------cccCCceeEEEeCCCCCceEEeccCC
Confidence 0000 11355667777777 45668899999
Q ss_pred CeEEEEecccc-ceeeeecCcccceeEEEEEeCCCC-CEEEEecCCCcEEEEeeeCCCc------------eEEEEeeee
Q psy17863 230 ECLRLFDKATG-ELLEEYKGHKSGDFRIECCLDSKD-SQIFCGSSDGKIYKWQLVDSSQ------------ISTLIHSVG 295 (341)
Q Consensus 230 ~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~------------~~~~~~~~~ 295 (341)
++|.+||+++. +++..+.+|...|..+ .|+|.. ..||+++.|+.+.+||+..-.. ...+.+.+|
T Consensus 295 ~tV~LwDlRnL~~~lh~~e~H~dev~~V--~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH 372 (422)
T KOG0264|consen 295 KTVALWDLRNLNKPLHTFEGHEDEVFQV--EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGH 372 (422)
T ss_pred CcEEEeechhcccCceeccCCCcceEEE--EeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCc
Confidence 99999999875 4688999999999988 677754 4788999999999999864322 223566699
Q ss_pred ccceEEEEEcCCCcEE-EEeC-CCcEEEEEccc
Q psy17863 296 KAVVNSLCSHPTRKHI-MSAC-GNNVKLWTAEE 326 (341)
Q Consensus 296 ~~~v~~~~~~~~~~~l-~~~~-d~~i~vw~~~~ 326 (341)
...|..+.|+|...++ ++.+ |+.+.||+...
T Consensus 373 ~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 373 TAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9999999999998765 5555 99999999874
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=198.72 Aligned_cols=283 Identities=15% Similarity=0.250 Sum_probs=214.8
Q ss_pred CceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCE--EEEecCCCcE
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQ--IASGASDKSV 79 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i 79 (341)
|..+-..++||++.|.+|+..|.|.+|++|+.||+|+||.+.++.+++++. ..+.|.|++|+|.+.. ||++-.+ .+
T Consensus 389 Pt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~~ 466 (733)
T KOG0650|consen 389 PTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-CV 466 (733)
T ss_pred cceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-ce
Confidence 556777899999999999999999999999999999999999999999987 5678999999997653 4444433 35
Q ss_pred EEEECCCCceee-------------------------------------eecccCccEEEEEEcCCCcEEEEecCCCeEE
Q psy17863 80 ILWEVTTGQPVR-------------------------------------RWREHASKVTCVKFNEDSSVVISGSQDNTVM 122 (341)
Q Consensus 80 ~iw~~~~~~~~~-------------------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 122 (341)
.+-+..-|..+. ..-.|...|..+.|+..|.+|++...++
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~--- 543 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS--- 543 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC---
Confidence 555543331110 1112444455555555555555443321
Q ss_pred EEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEc
Q psy17863 123 MWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTA 202 (341)
Q Consensus 123 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 202 (341)
....+.+.++...+....+.. ..+.+..+.|+|...++++++...+++||+
T Consensus 544 ---------------------------~~~~VliHQLSK~~sQ~PF~k--skG~vq~v~FHPs~p~lfVaTq~~vRiYdL 594 (733)
T KOG0650|consen 544 ---------------------------GNKSVLIHQLSKRKSQSPFRK--SKGLVQRVKFHPSKPYLFVATQRSVRIYDL 594 (733)
T ss_pred ---------------------------CcceEEEEecccccccCchhh--cCCceeEEEecCCCceEEEEeccceEEEeh
Confidence 123455666655444433332 345699999999999999999999999999
Q ss_pred cccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEecccc-ceeeeecCcccceeEEEEEeCCCCCEEEEecCCC
Q psy17863 203 EEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATG-ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG 274 (341)
Q Consensus 203 ~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 274 (341)
.... ....|..++++|.|..|+.|+.|+.+..||+.-. ++.+.+..|...+..+ ++++.-.++++|+.||
T Consensus 595 ~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~V--a~H~ryPLfas~sdDg 672 (733)
T KOG0650|consen 595 SKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSV--AFHKRYPLFASGSDDG 672 (733)
T ss_pred hHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhh--hhccccceeeeecCCC
Confidence 8743 5678999999999999999999999999998754 5778889999999888 8999999999999999
Q ss_pred cEEEEeee------CCC---ceEEEEeeeeccc----eEEEEEcCCCcEEEEeC-CCcEEEE
Q psy17863 275 KIYKWQLV------DSS---QISTLIHSVGKAV----VNSLCSHPTRKHIMSAC-GNNVKLW 322 (341)
Q Consensus 275 ~i~iwd~~------~~~---~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~-d~~i~vw 322 (341)
++.|+.-. ... ++..+. +|... |..+.|+|...+|++++ ||+|++|
T Consensus 673 tv~Vfhg~VY~Dl~qnpliVPlK~L~--gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 673 TVIVFHGMVYNDLLQNPLIVPLKRLR--GHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cEEEEeeeeehhhhcCCceEeeeecc--CceeecccceEeecccCCCceEEecCCCceEEee
Confidence 99998522 111 234444 66554 88999999999999999 9999998
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-26 Score=189.43 Aligned_cols=227 Identities=13% Similarity=0.226 Sum_probs=182.1
Q ss_pred eeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc-eeeEecC-cccceeEEEEecCCCEEEEecCCCcEEEEECCCCc
Q psy17863 11 CKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL-LLKTYGG-HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 88 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 88 (341)
-...+|.++||+.+.+.||.+-.+|.|.+|++..+= +...+.+ ....|.+++|+ ++..|++.+.+|.|.-||+.+++
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCc
Confidence 345799999999999999999999999999988753 3334444 34679999999 56678999999999999999999
Q ss_pred eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC----------CcCeEEeecCCCc-eEEEeeccCeEEEE
Q psy17863 89 PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS----------HHPIQCCLDSKDS-QIFCGSSDGKIYKW 157 (341)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----------~~~~~~~~~~~~~-~~~~~~~~g~i~~~ 157 (341)
+...+....+.|++++.+|.+..++.|+.||.+..++...+. ...+.++.+.+++ .++.|+.||.|++|
T Consensus 102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw 181 (691)
T KOG2048|consen 102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW 181 (691)
T ss_pred eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence 999999999999999999999999999999977777766543 2344555555555 59999999999999
Q ss_pred EccCCcceeeeE-----eee-cCceEEEEEECCCCceEEEeCCCceEEEEccccc-------CCCCeEEEEEccCCCEEE
Q psy17863 158 QLVDSSQISTLI-----HSV-GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY-------GQEPIVDACFTRDCQCIL 224 (341)
Q Consensus 158 d~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~ 224 (341)
|...+....... ... ....+-++.+-.++..+..-+.|.+.+||..... |...|.+++..+++++++
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVF 261 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEE
Confidence 999988776222 111 3345678888877666665567999999988755 778899999999988888
Q ss_pred EeecCCeEEEEecc
Q psy17863 225 TCSTDECLRLFDKA 238 (341)
Q Consensus 225 ~~~~d~~i~i~d~~ 238 (341)
+++.|+.|..|...
T Consensus 262 saGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 262 SAGVDPKIIQYSLT 275 (691)
T ss_pred EccCCCceEEEEec
Confidence 88888887777543
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-29 Score=200.66 Aligned_cols=288 Identities=18% Similarity=0.289 Sum_probs=218.1
Q ss_pred EEEEcc---CCCEEEEEeCCCeEEEEcCCCcce------eeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCc
Q psy17863 18 AVRFNV---DGSYCLTCGSDKKIKLWNPYRNLL------LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 88 (341)
Q Consensus 18 ~~~~~~---~~~~l~t~~~dg~i~iw~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 88 (341)
+..|++ ....|+.+.+||.|.++|...... +.....|...|..+.|-|....|++++.|.++++||+.+++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 356665 245789999999999999764322 35566899999999999977789999999999999999998
Q ss_pred eeee--ecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCC-----------------------------------
Q psy17863 89 PVRR--WREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRS----------------------------------- 130 (341)
Q Consensus 89 ~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~----------------------------------- 130 (341)
+... +.+|...|.+++|.| |...+++|+.||.|.|||++...
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 8776 889999999999999 66788999999999999987522
Q ss_pred ----CcCeEEeecCCCceEEEeec-cCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccc
Q psy17863 131 ----HHPIQCCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED 205 (341)
Q Consensus 131 ----~~~~~~~~~~~~~~~~~~~~-~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 205 (341)
...+....+.++..|++++. |+.|++||+++............. .+.-. .
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~------~~~t~-------------------s 268 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSD------KYPTH-------------------S 268 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCccc------CccCc-------------------c
Confidence 01234566667777887776 888899988876544332111000 00000 0
Q ss_pred cCCCCeEEEEEccCCCEEEEeecCCeEEEEecccc--ceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 206 YGQEPIVDACFTRDCQCILTCSTDECLRLFDKATG--ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 206 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
.....+.++.....|.+|++.+.|+.|+.|++... .++..+.++...-..+.-..+|++.++++|+.|...++|.+.+
T Consensus 269 krs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 269 KRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS 348 (720)
T ss_pred cceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence 01335677888888899999999999999998754 4567777777666666778999999999999999999999988
Q ss_pred CCceEEEEeeeeccceEEEEEcCCC-cEEEEeC-CCcEEEEEcccccCCc
Q psy17863 284 SSQISTLIHSVGKAVVNSLCSHPTR-KHIMSAC-GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 284 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~vw~~~~~~~~~ 331 (341)
.+....+.. +|...|++++|.|.. .-+++++ |..+++|++..+....
T Consensus 349 ~e~~~~~l~-Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 349 PEAPPALLL-GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred ccCChhhhh-CcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhc
Confidence 765433332 899999999998753 2355558 9999999997665444
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-28 Score=189.87 Aligned_cols=266 Identities=18% Similarity=0.243 Sum_probs=218.0
Q ss_pred cccceeEEEEecCCCE-EEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC----
Q psy17863 54 HAHEVNDATAACDSSQ-IASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS---- 128 (341)
Q Consensus 54 ~~~~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---- 128 (341)
....|.+++|+|...+ +++++. -.+.+|+..+....+++......+.++.|-.||++|++|+..|.|+++|+++
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 3468999999996544 454443 5699999988888888888889999999999999999999999999999665
Q ss_pred ----CCCcCeEEeecCCC--ceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEE
Q psy17863 129 ----RSHHPIQCCLDSKD--SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLW 200 (341)
Q Consensus 129 ----~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~ 200 (341)
....++....+++. ..+++|+.|+.+++||+.+... ......+...|.+.+++|....++.++ |+.|++|
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 23456665555443 4788899999999999998874 444555777899999999887555544 6999999
Q ss_pred Eccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEecccc-ceeeeecCcccceeEEEEEeCCCCCEEEEecC
Q psy17863 201 TAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATG-ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS 272 (341)
Q Consensus 201 ~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (341)
|.+... |..+|.++.+-|.|..+++++.+ .+++||+.+| +.+..+..|...|+++ .+..++..|++|+-
T Consensus 182 DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL--~l~s~~~rLlS~sL 258 (487)
T KOG0310|consen 182 DTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCL--RLASDSTRLLSGSL 258 (487)
T ss_pred EeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEE--EeecCCceEeeccc
Confidence 998762 88999999999999999988754 7999999855 5555666699999999 66678899999999
Q ss_pred CCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 273 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 273 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
|+.+++||+.+-+.+..+. ..++|.+++.+|+++.++.|- +|.+.+-+...+.
T Consensus 259 D~~VKVfd~t~~Kvv~s~~---~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 259 DRHVKVFDTTNYKVVHSWK---YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred ccceEEEEccceEEEEeee---cccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence 9999999988888888886 678999999999999999999 9988777554433
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-30 Score=195.81 Aligned_cols=239 Identities=21% Similarity=0.316 Sum_probs=198.4
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEEC
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 84 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 84 (341)
.+.+|.|-.++|+++.|.++++++++++.|+.+++|++.+.+...++.+|+..|+++.|......+++|+.|.+|++||+
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl 290 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL 290 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence 56678888899999999999999999999999999999999999999999999999999887777999999999999999
Q ss_pred CCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC-------cCeEEe-ecCCCceEEEeeccCeEEE
Q psy17863 85 TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH-------HPIQCC-LDSKDSQIFCGSSDGKIYK 156 (341)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~-~~~~~~~~~~~~~~g~i~~ 156 (341)
....+.+++. ..+.+.+|..+ ...++++-.|++|++||.++... ..+..+ ....+..+++.+.|.++.+
T Consensus 291 ~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~v 367 (459)
T KOG0288|consen 291 QKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKV 367 (459)
T ss_pred hhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceee
Confidence 9988877765 34556667665 45788999999999999887652 122222 3445557888899999999
Q ss_pred EEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEe
Q psy17863 157 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFD 236 (341)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 236 (341)
.|+++.+....+...... .....+.+.|||++.|+++|+.||.|+||+
T Consensus 368 iDlRt~eI~~~~sA~g~k--------------------------------~asDwtrvvfSpd~~YvaAGS~dgsv~iW~ 415 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFK--------------------------------CASDWTRVVFSPDGSYVAAGSADGSVYIWS 415 (459)
T ss_pred eecccccEEEEeeccccc--------------------------------cccccceeEECCCCceeeeccCCCcEEEEE
Confidence 999887665555432111 134478899999999999999999999999
Q ss_pred ccccceeeeecCcccc--eeEEEEEeCCCCCEEEEecCCCcEEEEe
Q psy17863 237 KATGELLEEYKGHKSG--DFRIECCLDSKDSQIFCGSSDGKIYKWQ 280 (341)
Q Consensus 237 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (341)
+.++++...+...... |+++ +|+|.|..+++++.++.+.+|.
T Consensus 416 v~tgKlE~~l~~s~s~~aI~s~--~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 416 VFTGKLEKVLSLSTSNAAITSL--SWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccCceEEEEeccCCCCcceEEE--EEcCCCchhhcccCCcceEecC
Confidence 9999998888766555 6666 8999999999999999999993
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-28 Score=196.45 Aligned_cols=319 Identities=19% Similarity=0.248 Sum_probs=242.4
Q ss_pred EeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc--e-----eeEecCcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 9 IDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL--L-----LKTYGGHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 9 l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~--~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
+.||.+-|.++.|+|.+..|++++.|.++.+|...+.. - +....+.........|+|+++.+++-+..|-.++
T Consensus 263 l~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred hcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 45999999999999999999999999999999876542 1 2223344567899999999999999999999999
Q ss_pred EECCCC---ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC------------CcCeEEeecCC-CceE
Q psy17863 82 WEVTTG---QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS------------HHPIQCCLDSK-DSQI 145 (341)
Q Consensus 82 w~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------------~~~~~~~~~~~-~~~~ 145 (341)
|...+. .+...+.+|.+.|++++|.|.|.+|++++.|.+-+++-.-..+ ...+.++.+.+ +..+
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F 422 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF 422 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee
Confidence 993332 2334567899999999999999999999999999988655221 12345555555 6678
Q ss_pred EEeeccCeEEEEEccCCc--------------------------------cee---------------e--------e--
Q psy17863 146 FCGSSDGKIYKWQLVDSS--------------------------------QIS---------------T--------L-- 168 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~~~--------------------------------~~~---------------~--------~-- 168 (341)
++|..+..+++|+....- ... . +
T Consensus 423 VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e 502 (764)
T KOG1063|consen 423 VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE 502 (764)
T ss_pred eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence 888888888888653210 000 0 0
Q ss_pred -----------------EeeecCceEEEEEECCCCceEEEeCC------CceEEEEcccc-------cCCCCeEEEEEcc
Q psy17863 169 -----------------IHSVGKAVVNSLCSHPTRKHIMSACG------NNVKLWTAEED-------YGQEPIVDACFTR 218 (341)
Q Consensus 169 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~-------~~~~~i~~~~~~~ 218 (341)
....+...+.+++.+|+++++++++. ..|++|+...- .|.-.|+.++|||
T Consensus 503 PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp 582 (764)
T KOG1063|consen 503 PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP 582 (764)
T ss_pred CChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence 00112345999999999999999884 35899987652 3888999999999
Q ss_pred CCCEEEEeecCCeEEEEeccccce----eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCC--CceEEEEe
Q psy17863 219 DCQCILTCSTDECLRLFDKATGEL----LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS--SQISTLIH 292 (341)
Q Consensus 219 ~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~ 292 (341)
||++|++.+.|+++.+|....... ....+.|+.-|+.. .|+|++.+++|++.|.+|++|...+. +.+..+..
T Consensus 583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdc--sW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~ 660 (764)
T KOG1063|consen 583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDC--SWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFAC 660 (764)
T ss_pred CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEc--ccCcccceeEEecCCceEEEEeccCchhhhhhhhch
Confidence 999999999999999998643321 23356788777655 89999999999999999999998887 55554333
Q ss_pred eeeccceEEEEEcCC----C-cEEEEeC-CCcEEEEEcccccC
Q psy17863 293 SVGKAVVNSLCSHPT----R-KHIMSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 293 ~~~~~~v~~~~~~~~----~-~~l~~~~-d~~i~vw~~~~~~~ 329 (341)
..+..+|++++|.|- . ..++.|- .|.|.+|+......
T Consensus 661 ~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~ 703 (764)
T KOG1063|consen 661 LKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHR 703 (764)
T ss_pred hccCCceeeEEeeccccccccceEEEEecccEEEEEecccccc
Confidence 367889999999773 2 2556666 99999999774433
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-27 Score=175.24 Aligned_cols=251 Identities=18% Similarity=0.224 Sum_probs=197.0
Q ss_pred cceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecC--CCeEE
Q psy17863 45 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ--DNTVM 122 (341)
Q Consensus 45 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~ 122 (341)
.++.+.++.....|+++.|+++|.++++++.|.++++||..+++.++++..+.-.+..++|......++.++. |.+|+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 3445566667789999999999999999999999999999999999999888888889999876666666654 44444
Q ss_pred EEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEE
Q psy17863 123 MWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWT 201 (341)
Q Consensus 123 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~ 201 (341)
. .++.+.+.++.+.. +...|.+++.+|.+..+++++ |+++++||
T Consensus 84 y---------------------------------Lsl~dNkylRYF~G--H~~~V~sL~~sP~~d~FlS~S~D~tvrLWD 128 (311)
T KOG1446|consen 84 Y---------------------------------LSLHDNKYLRYFPG--HKKRVNSLSVSPKDDTFLSSSLDKTVRLWD 128 (311)
T ss_pred E---------------------------------EEeecCceEEEcCC--CCceEEEEEecCCCCeEEecccCCeEEeeE
Confidence 4 44445555555554 456699999999988888776 68999999
Q ss_pred cccccC-----CCCeEEEEEccCCCEEEEeecCCeEEEEecccc--ceeeeecCc---ccceeEEEEEeCCCCCEEEEec
Q psy17863 202 AEEDYG-----QEPIVDACFTRDCQCILTCSTDECLRLFDKATG--ELLEEYKGH---KSGDFRIECCLDSKDSQIFCGS 271 (341)
Q Consensus 202 ~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~ 271 (341)
++.... ...-..++|+|+|-++|++.....|++||++.. .+..++.-. ..+...+ .|+|+|++++.++
T Consensus 129 lR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l--~FS~dGK~iLlsT 206 (311)
T KOG1446|consen 129 LRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDL--EFSPDGKSILLST 206 (311)
T ss_pred ecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeee--EEcCCCCEEEEEe
Confidence 996653 334456899999999999998889999999864 233444322 3344444 8999999999999
Q ss_pred CCCcEEEEeeeCCCceEEEEeeeecc-ceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCcc
Q psy17863 272 SDGKIYKWQLVDSSQISTLIHSVGKA-VVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQAG 332 (341)
Q Consensus 272 ~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~~ 332 (341)
..+.+++.|.-+|..+..+....... ---+.+|+||++++++++ ||+|.+|+++++.....
T Consensus 207 ~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 207 NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAV 269 (311)
T ss_pred CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence 99999999999999888887322222 225678999999999999 99999999988765443
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=198.40 Aligned_cols=126 Identities=17% Similarity=0.297 Sum_probs=106.4
Q ss_pred eeeEEeeeCCcEEEEEEcc-CCCEEEEEeCCCeEEEEcCCCccee------eEecCcccceeEEEEecCCCEEEEecCCC
Q psy17863 5 CVQTIDCKQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRNLLL------KTYGGHAHEVNDATAACDSSQIASGASDK 77 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 77 (341)
-+..|.+|.+.|+.+.|+| +..+|||++.|..|+||.+..+... ..+.+..-.|.++.|+|...-|+..+..|
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g 150 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG 150 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence 3456889999999999999 4568999999999999998754321 12334455789999999666566666679
Q ss_pred cEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC
Q psy17863 78 SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 130 (341)
Q Consensus 78 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 130 (341)
.+++||+.+++.+..+.+|.+.|.++.|+.||.+|++++.|..|+|||.+...
T Consensus 151 ~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~ 203 (1012)
T KOG1445|consen 151 SVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASM 203 (1012)
T ss_pred eEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCC
Confidence 99999999999999999999999999999999999999999999999988643
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-28 Score=188.03 Aligned_cols=230 Identities=22% Similarity=0.294 Sum_probs=195.5
Q ss_pred cceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeE
Q psy17863 56 HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ 135 (341)
Q Consensus 56 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 135 (341)
..+.++...|....+++|+.|..+.++|...++.+..+++|...|+.+.++|+...+++++.|..|++|.........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~-- 297 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT-- 297 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc--
Confidence 457788888877889999999999999999999999999999999999999999999999999999999876543111
Q ss_pred EeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccccc--------
Q psy17863 136 CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY-------- 206 (341)
Q Consensus 136 ~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~-------- 206 (341)
....+..+|+.+..+|.|.+++++++ +...+.+.+.+.
T Consensus 298 ---------------------------------~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~ 344 (506)
T KOG0289|consen 298 ---------------------------------SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE 344 (506)
T ss_pred ---------------------------------ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence 11124566888889999998888876 555555655543
Q ss_pred -CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCC
Q psy17863 207 -GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS 285 (341)
Q Consensus 207 -~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (341)
..-.+++.+|+|||.++.+|..|+.+++||+.++..+..|.+|.++|..+ .|+.+|-+|+++++|+.|++||++..+
T Consensus 345 ~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i--~FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 345 TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAI--SFSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEE--EeccCceEEEEEecCCeEEEEEehhhc
Confidence 33568999999999999999999999999999999999999999999998 899999999999999999999999998
Q ss_pred ceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEE
Q psy17863 286 QISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWT 323 (341)
Q Consensus 286 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~ 323 (341)
...++.. ....++.++.|.+.|.+|+.++ |=.|++++
T Consensus 423 n~kt~~l-~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 423 NFKTIQL-DEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred ccceeec-cccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 8888874 2334799999999999999997 66666655
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=177.82 Aligned_cols=249 Identities=19% Similarity=0.295 Sum_probs=192.8
Q ss_pred EeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC----cceeeEecCcccceeEEEEec--CCCEEEEecCCCcEEEE
Q psy17863 9 IDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR----NLLLKTYGGHAHEVNDATAAC--DSSQIASGASDKSVILW 82 (341)
Q Consensus 9 l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~----~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw 82 (341)
-.+|.+-|.++.|.+.|+.+|||+.|++|+|||... ..+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 457999999999999999999999999999999543 345556789999999999965 58899999999999999
Q ss_pred ECCCC---------ceeeeecccCccEEEEEEcC--CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeecc
Q psy17863 83 EVTTG---------QPVRRWREHASKVTCVKFNE--DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSD 151 (341)
Q Consensus 83 ~~~~~---------~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (341)
.-... ....++....+.|+++.|.| -|-.|++++.||.++||+.....
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~--------------------- 147 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM--------------------- 147 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcc---------------------
Confidence 85211 12345566778999999999 57789999999999999876532
Q ss_pred CeEEEEEccCCcceeeeEeeecCceEEEEEECCC---CceEEEeCCC------ceEEEEccccc-----------CCCCe
Q psy17863 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT---RKHIMSACGN------NVKLWTAEEDY-----------GQEPI 211 (341)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~i~~~~~~~~~-----------~~~~i 211 (341)
.+.-|.+...-...............++.|+|. ..+++++++. .+.||....+. +..+|
T Consensus 148 -nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI 226 (361)
T KOG2445|consen 148 -NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPI 226 (361)
T ss_pred -ccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcc
Confidence 233444433222111122223455678888875 4678888765 78888876643 78999
Q ss_pred EEEEEccC----CCEEEEeecCCeEEEEecccc--------------------ceeeeecCcccceeEEEEEeCCCCCEE
Q psy17863 212 VDACFTRD----CQCILTCSTDECLRLFDKATG--------------------ELLEEYKGHKSGDFRIECCLDSKDSQI 267 (341)
Q Consensus 212 ~~~~~~~~----~~~l~~~~~d~~i~i~d~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (341)
+.++|.|+ ...|++++.|| |+||.+... +.+..+..|.++++.+ .|+-.|..|
T Consensus 227 ~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv--~wNmtGtiL 303 (361)
T KOG2445|consen 227 RDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRV--RWNMTGTIL 303 (361)
T ss_pred eeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEE--EEeeeeeEE
Confidence 99999996 35789999999 999998731 2355678899999988 777889999
Q ss_pred EEecCCCcEEEEeee
Q psy17863 268 FCGSSDGKIYKWQLV 282 (341)
Q Consensus 268 ~~~~~dg~i~iwd~~ 282 (341)
++.+.||.|++|...
T Consensus 304 sStGdDG~VRLWkan 318 (361)
T KOG2445|consen 304 SSTGDDGCVRLWKAN 318 (361)
T ss_pred eecCCCceeeehhhh
Confidence 999999999999854
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=181.82 Aligned_cols=212 Identities=21% Similarity=0.354 Sum_probs=172.8
Q ss_pred CCceeeeEEeeeCCcEEEEEEcc-CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEec-CCCEEEEecCCCc
Q psy17863 1 MEYTCVQTIDCKQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC-DSSQIASGASDKS 78 (341)
Q Consensus 1 ~~~~~~~~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~ 78 (341)
||-.+++.++.|..+|.++.|++ +++.+++++-|++|++|+...++.+.++.+|...|...+|+| ..+.+++++.|++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 45678899999999999999998 466788889999999999999999999999999999999999 6789999999999
Q ss_pred EEEEECCCCceeeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 79 VILWEVTTGQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 79 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
+++||++.......+..|...+.++.|+. +...|++|+.|+.|+.||++.-+.
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~-------------------------- 225 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT-------------------------- 225 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc--------------------------
Confidence 99999987544445888999999999998 778899999999999999986441
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC-CCEEEEeecCCeEEEEe
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD-CQCILTCSTDECLRLFD 236 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d 236 (341)
++..+ ..+ .-.|..++|||. ...|++++.|-++++||
T Consensus 226 ------pl~eL--~gh----------------------------------~~AVRkvk~Sph~~~lLaSasYDmT~riw~ 263 (311)
T KOG0277|consen 226 ------PLFEL--NGH----------------------------------GLAVRKVKFSPHHASLLASASYDMTVRIWD 263 (311)
T ss_pred ------cceee--cCC----------------------------------ceEEEEEecCcchhhHhhhccccceEEecc
Confidence 11111 112 334555566663 35688999999999999
Q ss_pred cccc-ceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEee
Q psy17863 237 KATG-ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 281 (341)
Q Consensus 237 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (341)
...+ ..+.+...|+.-+..+.+... +..++|+.+.|+.++||+.
T Consensus 264 ~~~~ds~~e~~~~HtEFv~g~Dws~~-~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 264 PERQDSAIETVDHHTEFVCGLDWSLF-DPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccchhhhhhhhccceEEeccccccc-cCceeeecccccceeeecc
Confidence 8744 456677778887777755544 5679999999999999983
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-27 Score=200.02 Aligned_cols=279 Identities=15% Similarity=0.228 Sum_probs=219.2
Q ss_pred CCceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCc-ceeeEecCcccceeEEEEecCCCEEEEecCCCcE
Q psy17863 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN-LLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 79 (341)
Q Consensus 1 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 79 (341)
|++..+.--.+|+..-+.++|.|+|++|.+++.||.|++|+.... +....+..+...|.+++.. +.+|++++.+++|
T Consensus 1 M~~~r~klRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv 78 (933)
T KOG1274|consen 1 MSSTRLKLRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTV 78 (933)
T ss_pred CCcccccchhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceE
Confidence 444444444579999999999999999999999999999987655 4444454477788887764 5599999999999
Q ss_pred EEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEc
Q psy17863 80 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQL 159 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~ 159 (341)
.+|.+.+++.-..+....-++.+++|+.+|++++.|+.|-.|++.++....
T Consensus 79 ~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s----------------------------- 129 (933)
T KOG1274|consen 79 LRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS----------------------------- 129 (933)
T ss_pred EEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc-----------------------------
Confidence 999999998776776678899999999999999999999999888876543
Q ss_pred cCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc---------------CCCCeEEEEEccCCCEE
Q psy17863 160 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY---------------GQEPIVDACFTRDCQCI 223 (341)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~---------------~~~~i~~~~~~~~~~~l 223 (341)
.... ...+..+|.++.++|++.++++.. +|.+++|++.... ....+..++|+|+|..+
T Consensus 130 ----~~~~--lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~l 203 (933)
T KOG1274|consen 130 ----QEKV--LRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTL 203 (933)
T ss_pred ----hhee--ecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeE
Confidence 1111 222556799999999999988765 6899999987643 24567889999998888
Q ss_pred EEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEE
Q psy17863 224 LTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLC 303 (341)
Q Consensus 224 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 303 (341)
++...|+.|++|+...++....+......-....+.|+|+|+|||+++.||.|.|||.++-+. . .....|.+++
T Consensus 204 a~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~--~~~~~Vc~~a 277 (933)
T KOG1274|consen 204 AVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----H--EFKRAVCCEA 277 (933)
T ss_pred EeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----c--cccceeEEEe
Confidence 888899999999999999888886533222233448999999999999999999999987322 1 3457899999
Q ss_pred EcCCCcEEEEeC-CCcEEEE
Q psy17863 304 SHPTRKHIMSAC-GNNVKLW 322 (341)
Q Consensus 304 ~~~~~~~l~~~~-d~~i~vw 322 (341)
|.|+...+-.-. -|...+|
T Consensus 278 w~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 278 WKPNANAITLITALGTLGVS 297 (933)
T ss_pred cCCCCCeeEEEeeccccccC
Confidence 999987665544 4444433
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-27 Score=186.71 Aligned_cols=276 Identities=12% Similarity=0.205 Sum_probs=219.1
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC--cceeeEecCcccceeEEEEecCCC-EEEEecCCCcEEEEECCCCce
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR--NLLLKTYGGHAHEVNDATAACDSS-QIASGASDKSVILWEVTTGQP 89 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~ 89 (341)
.+.|+++.|+|....|++++.||.++||.+.. ...+..+.-...+|.+..|.|+|. .+++++....++.||+++.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 47899999999999999999999999998653 445666666678999999999999 899999999999999998765
Q ss_pred ee--eecccC-ccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------cCeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 90 VR--RWREHA-SKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HPIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 90 ~~--~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
.. ...++. ..+.....++++++|+..+..|.|.+....+++. ......+.+++..+++.+.+|.|.+||
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~n 372 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWN 372 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEe
Confidence 33 233333 4567788899999999999999999998877652 112234456667888888999999999
Q ss_pred ccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEecc
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 238 (341)
++....+..+..... -.-++++.++++.+|++|+..|.|-|||.+
T Consensus 373 l~~~~~~~rf~D~G~-----------------------------------v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 373 LRQNSCLHRFVDDGS-----------------------------------VHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred cCCcceEEEEeecCc-----------------------------------cceeeeeecCCCceEEeccCcceEEEeccc
Confidence 998877666654321 234667888899999999999999999965
Q ss_pred c------cceeeeecCcccceeEEEEEeCCCCCEEEEec--CCCcEEEEeeeCCCceEEEEe-eeeccceEEEEEcCCCc
Q psy17863 239 T------GELLEEYKGHKSGDFRIECCLDSKDSQIFCGS--SDGKIYKWQLVDSSQISTLIH-SVGKAVVNSLCSHPTRK 309 (341)
Q Consensus 239 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 309 (341)
+ .+++..+..-...|..+ .|+++.+.||.++ .+..+++-.+.+......++. ...-+.|+|++|||.+-
T Consensus 418 s~~~s~~PkPik~~dNLtt~Itsl--~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG 495 (514)
T KOG2055|consen 418 SCFASTNPKPIKTVDNLTTAITSL--QFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSG 495 (514)
T ss_pred hhhccCCCCchhhhhhhheeeeee--eeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCc
Confidence 3 35666666667778877 8999999988776 467899999887766666652 12345799999999999
Q ss_pred EEEEeC-CCcEEEEEcc
Q psy17863 310 HIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 310 ~l~~~~-d~~i~vw~~~ 325 (341)
+||.|. +|.+.+|.+.
T Consensus 496 ~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 496 YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eEEeecCCCceeeEeec
Confidence 999999 9999999974
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-26 Score=184.70 Aligned_cols=313 Identities=18% Similarity=0.224 Sum_probs=231.1
Q ss_pred eeeEEeeeC-CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 5 CVQTIDCKQ-GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 5 ~~~~l~~h~-~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
+...+.++. ..|.+++|++.+ .|.+.+.+|.|.-||+.++++...+....+.|.+++.+|.+..++.|+.||.+..++
T Consensus 60 ~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s 138 (691)
T KOG2048|consen 60 LEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFS 138 (691)
T ss_pred eeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEe
Confidence 455666665 689999999555 678888899999999999999999999999999999999999999999999888888
Q ss_pred CCCCcee--eeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC----------------cCeEEeecCCCceE
Q psy17863 84 VTTGQPV--RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH----------------HPIQCCLDSKDSQI 145 (341)
Q Consensus 84 ~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------------~~~~~~~~~~~~~~ 145 (341)
...++.. +.+...++.|.++.|+|++..+++|+.||.|++||...+.. ..+..+.+-.++.+
T Consensus 139 ~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI 218 (691)
T KOG2048|consen 139 IGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTI 218 (691)
T ss_pred cCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcE
Confidence 8777654 34455678999999999999999999999999999887542 22334455678899
Q ss_pred EEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccc-------------------
Q psy17863 146 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED------------------- 205 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~------------------- 205 (341)
++|.+.|+|.+||...+..++.+..+ ...|.+++..+++..+++++ ++.+..|...+.
T Consensus 219 ~sgDS~G~V~FWd~~~gTLiqS~~~h--~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs 296 (691)
T KOG2048|consen 219 ASGDSAGTVTFWDSIFGTLIQSHSCH--DADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRS 296 (691)
T ss_pred EEecCCceEEEEcccCcchhhhhhhh--hcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCccccee
Confidence 99999999999999988877666543 33477777777765555443 343333222110
Q ss_pred --------------------------------------------------------------------------------
Q psy17863 206 -------------------------------------------------------------------------------- 205 (341)
Q Consensus 206 -------------------------------------------------------------------------------- 205 (341)
T Consensus 297 ~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llk 376 (691)
T KOG2048|consen 297 MAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLK 376 (691)
T ss_pred eeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhhee
Confidence
Q ss_pred ---cCCCCeEEEEEccCCCEEEEeecCCeEEEEeccc-------------------------------------------
Q psy17863 206 ---YGQEPIVDACFTRDCQCILTCSTDECLRLFDKAT------------------------------------------- 239 (341)
Q Consensus 206 ---~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~------------------------------------------- 239 (341)
.....|.+.+.+|+|++++.+.-. .+++|.+..
T Consensus 377 l~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~ 455 (691)
T KOG2048|consen 377 LFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEE 455 (691)
T ss_pred eecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEE
Confidence 023457889999999998887621 233332221
Q ss_pred -------cceeeeec--CcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcC-CCc
Q psy17863 240 -------GELLEEYK--GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP-TRK 309 (341)
Q Consensus 240 -------~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 309 (341)
++.+..+. +....+..+ +.+++|++||+.+..|.|.+|++++.+.-.... .-...++.++++| +..
T Consensus 456 ~el~~ps~kel~~~~~~~~~~~I~~l--~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~--rln~~vTa~~~~~~~~~ 531 (691)
T KOG2048|consen 456 FELETPSFKELKSIQSQAKCPSISRL--VVSSDGNYIAAISTRGQIFVYNLETLESHLLKV--RLNIDVTAAAFSPFVRN 531 (691)
T ss_pred EEecCcchhhhhccccccCCCcceeE--EEcCCCCEEEEEeccceEEEEEcccceeecchh--ccCcceeeeeccccccC
Confidence 01111111 112234444 789999999999999999999998876654443 2347899999994 556
Q ss_pred EEEEeC-CCcEEEEEcc
Q psy17863 310 HIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 310 ~l~~~~-d~~i~vw~~~ 325 (341)
.|+.+. ++.+.-||++
T Consensus 532 ~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 532 RLVVATSNNQVFEFDIE 548 (691)
T ss_pred cEEEEecCCeEEEEecc
Confidence 777777 9999999994
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-28 Score=188.91 Aligned_cols=259 Identities=18% Similarity=0.301 Sum_probs=199.2
Q ss_pred EEEEEeC-CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEE
Q psy17863 27 YCLTCGS-DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKF 105 (341)
Q Consensus 27 ~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 105 (341)
+++++.. ...+.+|.+...........-.++|.+++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-..|+|+.|
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f 131 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF 131 (476)
T ss_pred heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE
Confidence 4555443 457889988766555544446788999999999999999989999999999999999999999999999999
Q ss_pred cCCCcEEEEecCCCeEEEEEecCC-------CC----------cCeEEe---ecCCCceEEEeeccCeEEEEEccCCcce
Q psy17863 106 NEDSSVVISGSQDNTVMMWDVKSR-------SH----------HPIQCC---LDSKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 106 ~~~~~~l~~~~~d~~i~iwd~~~~-------~~----------~~~~~~---~~~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
+.|+.+|++|+.||.|.+|.+..- .. -++..+ ......++++++.|.++++||+..+..+
T Consensus 132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL 211 (476)
T ss_pred eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence 999999999999999999987531 11 112222 2224458889999999999998887666
Q ss_pred eeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccc------
Q psy17863 166 STLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKAT------ 239 (341)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~------ 239 (341)
..+.. +..+.+++++|-++.+++|+++|.|.+.++..
T Consensus 212 lti~f-------------------------------------p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~ 254 (476)
T KOG0646|consen 212 LTITF-------------------------------------PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSA 254 (476)
T ss_pred EEEec-------------------------------------CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccc
Confidence 55543 34567777777777777888888777776542
Q ss_pred ----------cceeeeecCccc--ceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCC
Q psy17863 240 ----------GELLEEYKGHKS--GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 240 ----------~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
+..+..+.+|.+ +|+++ +++.||.+|++|+.||.++|||+.+.++++++. ...++|+.+.+.|-
T Consensus 255 ~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL--ais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~--~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 255 GVNQKGRHEENTQINVLVGHENESAITCL--AISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ--TSKGPVTNLQINPL 330 (476)
T ss_pred cccccccccccceeeeeccccCCcceeEE--EEecCccEEEeeCCCCCEEEEecchHHHHHHHh--hhccccceeEeecc
Confidence 334667788988 88888 888999999999999999999999999999987 46789999999765
Q ss_pred CcEEEEeC--CCcEEEEEccc
Q psy17863 308 RKHIMSAC--GNNVKLWTAEE 326 (341)
Q Consensus 308 ~~~l~~~~--d~~i~vw~~~~ 326 (341)
.+-...+. ...+-.|++..
T Consensus 331 ~~~~~l~~~~~ps~~~~~lkr 351 (476)
T KOG0646|consen 331 ERGIILFEHKQPSLPNPHLKR 351 (476)
T ss_pred ccceecccccCccCCchHhhc
Confidence 44444433 44455555443
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-30 Score=209.37 Aligned_cols=236 Identities=20% Similarity=0.348 Sum_probs=210.2
Q ss_pred eEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC
Q psy17863 7 QTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 7 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 86 (341)
+.+..|...|.++..-..++.+++|+.|..+-+|.......+..+.+|..+|.++.|+++..+|++|+.+|+|++||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 45667899999999877889999999999999999888888888999999999999999999999999999999999999
Q ss_pred CceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCccee
Q psy17863 87 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 166 (341)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~ 166 (341)
.+.++++.+|...+..+.|+|-+.+.++++.|+.+++||++... .++.|+
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G----------------------c~~~~~-------- 151 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG----------------------CSHTYK-------- 151 (825)
T ss_pred hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC----------------------ceeeec--------
Confidence 99999999999999999999999999999999999999987432 111111
Q ss_pred eeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeee
Q psy17863 167 TLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY 246 (341)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 246 (341)
. |...+..+.|+|+|++++.++.|..+++||+..|+...+|
T Consensus 152 ---s------------------------------------~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef 192 (825)
T KOG0267|consen 152 ---S------------------------------------HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEF 192 (825)
T ss_pred ---C------------------------------------CcceeEEEeecCCCceeeccCCcceeeeeccccccccccc
Confidence 0 2344677889999999999999999999999999999999
Q ss_pred cCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC
Q psy17863 247 KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
..|...+..+ .++|..-++++|+.|+++++||+++.+.+.... .....|.+.+|+|+++.+++|.
T Consensus 193 ~~~e~~v~sl--e~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~--~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 193 KSHEGKVQSL--EFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK--PETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred cccccccccc--ccCchhhhhccCCCCceeeeeccceeEEeeccC--CccCCceeeeecCCceeeecCc
Confidence 9999999888 689998899999999999999999888888777 5678899999999999999887
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=179.00 Aligned_cols=245 Identities=20% Similarity=0.370 Sum_probs=199.8
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcC------CC--------------------------------
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNP------YR-------------------------------- 44 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~------~~-------------------------------- 44 (341)
.+|+.++.||.+.|++++|++.+.++++++.|++..||.. ..
T Consensus 180 g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ 259 (481)
T KOG0300|consen 180 GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH 259 (481)
T ss_pred ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence 4688899999999999999999999999999999999961 10
Q ss_pred --cceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEE
Q psy17863 45 --NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVM 122 (341)
Q Consensus 45 --~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 122 (341)
..++..+.+|.+.|.+..|...++.+++++.|.+..+||+++++.+..+.+|....+.++-+|..+++++.+.|.+.+
T Consensus 260 tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFR 339 (481)
T KOG0300|consen 260 TIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFR 339 (481)
T ss_pred eeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeE
Confidence 014566789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecC---------CCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcce-eeeEeeecCceEEEEEECCCCceEEEe
Q psy17863 123 MWDVKS---------RSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQI-STLIHSVGKAVVNSLCSHPTRKHIMSA 192 (341)
Q Consensus 123 iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (341)
+||++. +....+....+..+..+++|+.|.++++||+++.... .++.
T Consensus 340 LWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR----------------------- 396 (481)
T KOG0300|consen 340 LWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR----------------------- 396 (481)
T ss_pred eccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeee-----------------------
Confidence 999884 2234556667777889999999999999999875432 2221
Q ss_pred CCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEecccccee----eeecCcccceeEEEEEeCCCCCEEE
Q psy17863 193 CGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELL----EEYKGHKSGDFRIECCLDSKDSQIF 268 (341)
Q Consensus 193 ~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (341)
...+++.++.+..+..++.-..+..|++||+...+.- ..-++|...+.+..|.-.+.-.-|+
T Consensus 397 --------------tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLf 462 (481)
T KOG0300|consen 397 --------------TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLF 462 (481)
T ss_pred --------------cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccc
Confidence 1356677777777888888888999999999744321 2335788888877443333335688
Q ss_pred EecCCCcEEEEeeeCC
Q psy17863 269 CGSSDGKIYKWQLVDS 284 (341)
Q Consensus 269 ~~~~dg~i~iwd~~~~ 284 (341)
+++.|..+.=|++...
T Consensus 463 tcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 463 TCGFDRMVAGWKINTP 478 (481)
T ss_pred cccccceeeeeEeccc
Confidence 9999999999998654
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-27 Score=191.11 Aligned_cols=238 Identities=22% Similarity=0.293 Sum_probs=195.4
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecc-c
Q psy17863 18 AVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE-H 96 (341)
Q Consensus 18 ~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~ 96 (341)
-+.|+. .+.||+|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |
T Consensus 182 lldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 182 LLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred Hhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 356663 44677765 56899999999886666666689999999999999999999999999999999999999998 9
Q ss_pred CccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCce
Q psy17863 97 ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV 176 (341)
Q Consensus 97 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 176 (341)
...|-+++|. +..+.+|+.|+.|..+|++..+.... .+
T Consensus 260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--------------------------------~~-------- 297 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--------------------------------TL-------- 297 (484)
T ss_pred CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--------------------------------hh--------
Confidence 9999999998 66899999999999999886541000 01
Q ss_pred EEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEE
Q psy17863 177 VNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRI 256 (341)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 256 (341)
..|...|..+.|++|++++++|+.|+.+.|||....+++..+..|...|..+
T Consensus 298 ----------------------------~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~ 349 (484)
T KOG0305|consen 298 ----------------------------QGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKAL 349 (484)
T ss_pred ----------------------------hcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEe
Confidence 1135567778888899999999999999999998888999999999999999
Q ss_pred EEEeCCCCCEEEEe--cCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC---CCcEEEEEcccccCCc
Q psy17863 257 ECCLDSKDSQIFCG--SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC---GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 257 ~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~vw~~~~~~~~~ 331 (341)
.|++... ..||+| +.|+.|++||..+++.+..+. ....|.+|.|++..+-|+++. ++.|.||+..+.....
T Consensus 350 awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd---tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~ 425 (484)
T KOG0305|consen 350 AWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD---TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVA 425 (484)
T ss_pred eeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc---cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceee
Confidence 6555444 478876 479999999999999988886 567899999999986666554 7889999997754433
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=197.28 Aligned_cols=237 Identities=23% Similarity=0.377 Sum_probs=196.1
Q ss_pred EEEEe-cCCCEEEEecCCCcEEEEECCCCc------eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--
Q psy17863 60 DATAA-CDSSQIASGASDKSVILWEVTTGQ------PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-- 130 (341)
Q Consensus 60 ~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-- 130 (341)
.+..+ |.+++|++|+.||.|++|++.... .+..++.|.+.|..++...+++.|++++.|-+|++|+.....
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 33443 366789999999999999986432 367788899999999999999999999999999999987753
Q ss_pred --------CcCeEEee--cCCCceEEEeeccCeEEEEEccCCcc--eeeeEeeecCceEEEEEECCCCceEEEeCCCceE
Q psy17863 131 --------HHPIQCCL--DSKDSQIFCGSSDGKIYKWQLVDSSQ--ISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVK 198 (341)
Q Consensus 131 --------~~~~~~~~--~~~~~~~~~~~~~g~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 198 (341)
...+.++. ......+++|+-|+.|.+||+..+.. +..+ ....+.++..
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~----n~~t~~sl~s---------------- 168 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASF----NNVTVNSLGS---------------- 168 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhc----cccccccCCC----------------
Confidence 12334433 34556889999999999999998643 1111 1111111111
Q ss_pred EEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEE
Q psy17863 199 LWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYK 278 (341)
Q Consensus 199 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 278 (341)
.+..+|.+++..+.|..+++|+.++.+++||.++++.+..++||...|..+ ..++||..++++++||+|++
T Consensus 169 -------G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~l--l~~dDGt~~ls~sSDgtIrl 239 (735)
T KOG0308|consen 169 -------GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVL--LVNDDGTRLLSASSDGTIRL 239 (735)
T ss_pred -------CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEE--EEcCCCCeEeecCCCceEEe
Confidence 246789999999999999999999999999999999999999999999988 78999999999999999999
Q ss_pred EeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccc
Q psy17863 279 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 279 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~ 327 (341)
||+...+++.++. .|...|.++..+|+-..+.+|+ ||.|..=++...
T Consensus 240 WdLgqQrCl~T~~--vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 240 WDLGQQRCLATYI--VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eeccccceeeeEE--eccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 9999999999998 8999999999999999999999 999998888774
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=188.73 Aligned_cols=275 Identities=12% Similarity=0.184 Sum_probs=221.2
Q ss_pred eEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCc---ceeeEec--CcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 7 QTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN---LLLKTYG--GHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 7 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~---~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
++|. |..-|.++..|...+++.||+ .|.|+|||+... .++..+. ....-|.++...|||+.|++|++-.++.|
T Consensus 414 ~tL~-HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsi 491 (705)
T KOG0639|consen 414 NTLA-HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSI 491 (705)
T ss_pred hhhc-cCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeee
Confidence 3443 888999999999999999988 688999998643 2333333 24567899999999999999999999999
Q ss_pred EECCCCcee--eeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEc
Q psy17863 82 WEVTTGQPV--RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQL 159 (341)
Q Consensus 82 w~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~ 159 (341)
||+....+. ..+....-....++.+||.+..++++.||.|.|||+.+..
T Consensus 492 WDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~----------------------------- 542 (705)
T KOG0639|consen 492 WDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT----------------------------- 542 (705)
T ss_pred eeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-----------------------------
Confidence 999876443 3333334556778999999999999999999988887532
Q ss_pred cCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCeE
Q psy17863 160 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECL 232 (341)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i 232 (341)
.++.+.. +...+.++.++++|..|.+++ +++++.||+++.. ....|.++..+|++.++++|-+++.+
T Consensus 543 ----~VrqfqG--htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~v 616 (705)
T KOG0639|consen 543 ----LVRQFQG--HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNV 616 (705)
T ss_pred ----eeecccC--CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcE
Confidence 2233333 344578889999998888877 6899999988754 45689999999999999999999999
Q ss_pred EEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEE
Q psy17863 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 312 (341)
Q Consensus 233 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 312 (341)
.+.... +.....+.-|.+-|..+ .|.+-|+++++.+.|+.+..|...-|..+...+ ....|.++..|.|.++++
T Consensus 617 evlh~s-kp~kyqlhlheScVLSl--KFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---E~SsVlsCDIS~ddkyIV 690 (705)
T KOG0639|consen 617 EVLHTS-KPEKYQLHLHESCVLSL--KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---ESSSVLSCDISFDDKYIV 690 (705)
T ss_pred EEEecC-CccceeecccccEEEEE--EecccCceeeecCchhhhhhccCccccceeecc---ccCcceeeeeccCceEEE
Confidence 998865 33445566677777777 788999999999999999999999998888776 578899999999999999
Q ss_pred EeC-CCcEEEEEc
Q psy17863 313 SAC-GNNVKLWTA 324 (341)
Q Consensus 313 ~~~-d~~i~vw~~ 324 (341)
+|+ |....||.+
T Consensus 691 TGSGdkkATVYeV 703 (705)
T KOG0639|consen 691 TGSGDKKATVYEV 703 (705)
T ss_pred ecCCCcceEEEEE
Confidence 999 988888875
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-26 Score=179.53 Aligned_cols=290 Identities=15% Similarity=0.172 Sum_probs=213.7
Q ss_pred ceeeeEEeeeCCcEEEEEEccCC--CEEEEEeCCCeEEEEcCCCc----ceeeEecCcccceeEEEEec-CCCEEEEecC
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDG--SYCLTCGSDKKIKLWNPYRN----LLLKTYGGHAHEVNDATAAC-DSSQIASGAS 75 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~--~~l~t~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 75 (341)
+......+-|.++|++++|+|.. +++|+|..-|+|-+||+.+. ..+..+..|..+|.++.|+| +...+++.+.
T Consensus 176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc
Confidence 45566788899999999999964 58889999999999999532 34556778999999999999 4567999999
Q ss_pred CCcEEEEECCCCceeeee--cccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC---------cCeEEeecC--CC
Q psy17863 76 DKSVILWEVTTGQPVRRW--REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH---------HPIQCCLDS--KD 142 (341)
Q Consensus 76 dg~i~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---------~~~~~~~~~--~~ 142 (341)
||+|++-|++.+.....+ ......+..+.|+.+...++.+..=|...+||+++... ..+..+... ..
T Consensus 256 DGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 256 DGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP 335 (498)
T ss_pred CceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCc
Confidence 999999999887543333 33556678888988888888888878999999998653 122233332 23
Q ss_pred ceEEEeeccCeEEEEEccCCcceee-eEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCC
Q psy17863 143 SQIFCGSSDGKIYKWQLVDSSQIST-LIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQ 221 (341)
Q Consensus 143 ~~~~~~~~~g~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 221 (341)
..+++++.|++.++||++....... +. ..-.|...|.++.|||.+-
T Consensus 336 ~~laT~s~D~T~kIWD~R~l~~K~sp~l---------------------------------st~~HrrsV~sAyFSPs~g 382 (498)
T KOG4328|consen 336 WFLATASLDQTAKIWDLRQLRGKASPFL---------------------------------STLPHRRSVNSAYFSPSGG 382 (498)
T ss_pred hheeecccCcceeeeehhhhcCCCCcce---------------------------------ecccccceeeeeEEcCCCC
Confidence 4889999999999999987544332 10 0112466788888999877
Q ss_pred EEEEeecCCeEEEEecc----ccceeeeecC---cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeee
Q psy17863 222 CILTCSTDECLRLFDKA----TGELLEEYKG---HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV 294 (341)
Q Consensus 222 ~l~~~~~d~~i~i~d~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 294 (341)
.|++.+.|..|+|||.. ...++..+.. +....+.+...|.|+..++++|-.-..|-|+|-..++.+..+.. .
T Consensus 383 tl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~-P 461 (498)
T KOG4328|consen 383 TLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD-P 461 (498)
T ss_pred ceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccC-c
Confidence 79999999999999973 3334444431 12234555668999999999999999999999777776766542 1
Q ss_pred eccceEE-EEEcCCCcEEEEeC--CCcEEEEEccc
Q psy17863 295 GKAVVNS-LCSHPTRKHIMSAC--GNNVKLWTAEE 326 (341)
Q Consensus 295 ~~~~v~~-~~~~~~~~~l~~~~--d~~i~vw~~~~ 326 (341)
....|.+ ..|+|-+..+++|+ .|.|+||.-++
T Consensus 462 ~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 462 ESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cccccccceeecccccceeccCCccceEEEEecCC
Confidence 2223333 47999998777777 88888887543
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-26 Score=170.39 Aligned_cols=235 Identities=19% Similarity=0.269 Sum_probs=172.4
Q ss_pred CcccceeEEEEec-CCCEEEEecCCCcEEEEECCC-Ccee-eeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCC
Q psy17863 53 GHAHEVNDATAAC-DSSQIASGASDKSVILWEVTT-GQPV-RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR 129 (341)
Q Consensus 53 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 129 (341)
.....|.+++|+| ...++++++.||+||+|+++. |..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4567899999999 555677899999999999987 3332 344569999999999999999999999999999999987
Q ss_pred CC-------cCeEEeec---CCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEE
Q psy17863 130 SH-------HPIQCCLD---SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKL 199 (341)
Q Consensus 130 ~~-------~~~~~~~~---~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 199 (341)
+. .++..+.+ .....|++|+.|.+|+.||++...++..+..... ++++
T Consensus 105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR---vYa~------------------- 162 (347)
T KOG0647|consen 105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER---VYAA------------------- 162 (347)
T ss_pred CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce---eeeh-------------------
Confidence 63 23333322 2334799999999999999998888777654321 1111
Q ss_pred EEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeee-ec-CcccceeEEEEEeCCCCCEEEEecCCCcEE
Q psy17863 200 WTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEE-YK-GHKSGDFRIECCLDSKDSQIFCGSSDGKIY 277 (341)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 277 (341)
+--...++++..++.|.+|+++++..... .. ...-.+.++ +..++....+.|+-+|.+.
T Consensus 163 -----------------Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~v--a~f~d~~~~alGsiEGrv~ 223 (347)
T KOG0647|consen 163 -----------------DVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCV--ACFQDKDGFALGSIEGRVA 223 (347)
T ss_pred -----------------hccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEE--EEEecCCceEeeeecceEE
Confidence 11234578888899999999976543221 11 112234555 4445555569999999999
Q ss_pred EEeeeCCCc--eEEEEeeeec---------cceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 278 KWQLVDSSQ--ISTLIHSVGK---------AVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 278 iwd~~~~~~--~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
|..+..+.+ -..++ -|. -.|++++|+|....|++++ ||++.+||-+.....
T Consensus 224 iq~id~~~~~~nFtFk--CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kL 286 (347)
T KOG0647|consen 224 IQYIDDPNPKDNFTFK--CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKL 286 (347)
T ss_pred EEecCCCCccCceeEE--EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhh
Confidence 999988733 34444 343 3688999999999999999 999999997654433
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=184.12 Aligned_cols=238 Identities=21% Similarity=0.359 Sum_probs=186.6
Q ss_pred eeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceee------------EecCcccceeEEEEecCC-CEEEEecCCC
Q psy17863 11 CKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLK------------TYGGHAHEVNDATAACDS-SQIASGASDK 77 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~------------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg 77 (341)
+....|++++|++.|..|++.+.....+|+|-...+... .-++|...++|.+|+|+. ..+++++.||
T Consensus 212 ~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dg 291 (641)
T KOG0772|consen 212 CETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDG 291 (641)
T ss_pred ccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCC
Confidence 345689999999999999988888999999954333322 235899999999999965 5689999999
Q ss_pred cEEEEECCCCce-eeeec-----ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeecc
Q psy17863 78 SVILWEVTTGQP-VRRWR-----EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSD 151 (341)
Q Consensus 78 ~i~iw~~~~~~~-~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (341)
++++||+.+.+. ...++ +..-+++.++|+++++.+|+|+.||.|.+|+..+....+...
T Consensus 292 tlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~--------------- 356 (641)
T KOG0772|consen 292 TLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMK--------------- 356 (641)
T ss_pred cEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceE---------------
Confidence 999999987543 23332 234578999999999999999999999999986543222111
Q ss_pred CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc----------CCCCeEEEEEccCC
Q psy17863 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY----------GQEPIVDACFTRDC 220 (341)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~----------~~~~i~~~~~~~~~ 220 (341)
.-..+.....|+++.|+++|++|++-+ ++++++||++... ...+-+.++|||+.
T Consensus 357 ---------------vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~ 421 (641)
T KOG0772|consen 357 ---------------VKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD 421 (641)
T ss_pred ---------------eeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc
Confidence 111222334799999999999999876 6999999998754 34567889999999
Q ss_pred CEEEEeec------CCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEe
Q psy17863 221 QCILTCST------DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 280 (341)
Q Consensus 221 ~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (341)
++|++|+. .|.+.+||..+.+.+.++.-.... ++++.|+|.=+.|++|+.||.+++|-
T Consensus 422 kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aS--vv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 422 KLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTAS--VVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred eEEEecccccCCCCCceEEEEeccceeeEEEecCCCce--EEEEeecchhhheeeecCCCceEEEE
Confidence 99999865 578999999998888888766544 45569999999999999999999974
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=181.39 Aligned_cols=228 Identities=19% Similarity=0.322 Sum_probs=182.3
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECC-------
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT------- 85 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~------- 85 (341)
.++|.+++-+|+|.+|+.|+..|.|++|.+.+|.++..+..|-..|+|+.|+-|+.+|++|+.||.|.+|.+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 5789999999999999999899999999999999999999999999999999999999999999999999874
Q ss_pred --CCceeeeecccCccEEEEEEcCC--CcEEEEecCCCeEEEEEecCCCC--------cCeEEeecCCCceEEEeeccCe
Q psy17863 86 --TGQPVRRWREHASKVTCVKFNED--SSVVISGSQDNTVMMWDVKSRSH--------HPIQCCLDSKDSQIFCGSSDGK 153 (341)
Q Consensus 86 --~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~ 153 (341)
+-+++..+..|.-+|+++...+. ..+|++++.|.++++||+..+.. ....+...+.+..+++|+.+|.
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcce
Confidence 23678889999999999998763 46899999999999999988752 2334455667779999999999
Q ss_pred EEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEE
Q psy17863 154 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLR 233 (341)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 233 (341)
|.+.++........ .+..-..++.+..+-+. .....+.+|+|++++-||..|++|+.||.+.
T Consensus 241 I~~~~~~~~~~~~~--------~v~~k~~~~~~t~~~~~----------~Gh~~~~~ITcLais~DgtlLlSGd~dg~Vc 302 (476)
T KOG0646|consen 241 IFQNLLFKLSGQSA--------GVNQKGRHEENTQINVL----------VGHENESAITCLAISTDGTLLLSGDEDGKVC 302 (476)
T ss_pred EEeeehhcCCcccc--------cccccccccccceeeee----------ccccCCcceeEEEEecCccEEEeeCCCCCEE
Confidence 99988765442111 01111112222111111 1111235899999999999999999999999
Q ss_pred EEeccccceeeeecCcccceeEEEE
Q psy17863 234 LFDKATGELLEEYKGHKSGDFRIEC 258 (341)
Q Consensus 234 i~d~~~~~~~~~~~~~~~~~~~~~~ 258 (341)
+||+.+.++++++....++|+.+.+
T Consensus 303 vWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 303 VWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred EEecchHHHHHHHhhhccccceeEe
Confidence 9999999999988877788888744
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-25 Score=157.84 Aligned_cols=245 Identities=20% Similarity=0.279 Sum_probs=186.2
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc-----eeeEecCcccceeEEEEecC----CCEEEEec-C
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL-----LLKTYGGHAHEVNDATAACD----SSQIASGA-S 75 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~-----~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~ 75 (341)
.++-+.|.+.|.|.+|+|+|+++|+|+.|.+|++.-++... .-.++..|.+.|..++|..+ +..|++++ .
T Consensus 82 ~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 82 CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence 34556799999999999999999999999999997654322 22357789999999999653 45666654 4
Q ss_pred CCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEE
Q psy17863 76 DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIY 155 (341)
Q Consensus 76 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 155 (341)
|..|++-|...|+..+.+.+|.+-|.++- +=++-.+++|+.|.+|++||++-.... .
T Consensus 162 dc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v----------------------~ 218 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCV----------------------N 218 (350)
T ss_pred cceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeecccee----------------------e
Confidence 77888889999999999999999988762 335889999999999999999865411 1
Q ss_pred EEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccccc-------CCCCeEEEEEccCCCEEEEee
Q psy17863 156 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCS 227 (341)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~ 227 (341)
..|..- .........+.++++.|.|++++++.. ....+||++.+. |...|.++.|+|...++++++
T Consensus 219 ~l~~~~------~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~s 292 (350)
T KOG0641|consen 219 TLDNDF------HDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCS 292 (350)
T ss_pred eccCcc------cCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEec
Confidence 111000 000113456788888888888888764 667788887654 778899999999999999999
Q ss_pred cCCeEEEEeccccce-----eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeee
Q psy17863 228 TDECLRLFDKATGEL-----LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 282 (341)
Q Consensus 228 ~d~~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (341)
.|..|++-|+. |.+ +.....|...+. .+.|+|+.--+++.+.|.++.+|-+.
T Consensus 293 yd~~ikltdlq-gdla~el~~~vv~ehkdk~i--~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 293 YDMKIKLTDLQ-GDLAHELPIMVVAEHKDKAI--QCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccceEEEeecc-cchhhcCceEEEEeccCceE--EEEecCccceeeeccCcceEEEeccC
Confidence 99999999986 332 233345666544 44899999889999999999999753
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-24 Score=176.93 Aligned_cols=258 Identities=11% Similarity=0.128 Sum_probs=186.5
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEE-EEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEe-cCCCcEEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYC-LTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG-ASDKSVIL 81 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i 81 (341)
++++.+..|.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|+|+++.++++ ..++.+++
T Consensus 22 ~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 22 EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEE
Confidence 45666765544 6789999999876 5667789999999999888777765443 5678999999977655 56899999
Q ss_pred EECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCC-eEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEcc
Q psy17863 82 WEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN-TVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLV 160 (341)
Q Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~ 160 (341)
||+.+++.+..+.. ...+.+++|+|++++++++..++ .+..||.++.+
T Consensus 100 ~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~------------------------------ 148 (300)
T TIGR03866 100 IDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE------------------------------ 148 (300)
T ss_pred EECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe------------------------------
Confidence 99998887777653 34468899999999999887764 35566665432
Q ss_pred CCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEcccccC--------------CCCeEEEEEccCCCEEE
Q psy17863 161 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDYG--------------QEPIVDACFTRDCQCIL 224 (341)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~--------------~~~i~~~~~~~~~~~l~ 224 (341)
...... ....+..++++|+++.++++. ++.+.+||+..... ......++|+|++++++
T Consensus 149 ---~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~ 222 (300)
T TIGR03866 149 ---IVDNVL---VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAF 222 (300)
T ss_pred ---EEEEEE---cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEE
Confidence 111110 011245678888888775543 57788888875431 01224688999999865
Q ss_pred E-eecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEe-cCCCcEEEEeeeCCCceEEEEeeeeccceEEE
Q psy17863 225 T-CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG-SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 302 (341)
Q Consensus 225 ~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 302 (341)
+ ...++.+.+||.++++.+..+. +...+..+ +|+|++++|+++ ..+|.|++||+.+++.+..++ .. ...+.+
T Consensus 223 ~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~--~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~--~~-~~~~~~ 296 (300)
T TIGR03866 223 VALGPANRVAVVDAKTYEVLDYLL-VGQRVWQL--AFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK--VG-RLPWGV 296 (300)
T ss_pred EEcCCCCeEEEEECCCCcEEEEEE-eCCCcceE--EECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--cc-ccccee
Confidence 4 4556789999999888766553 33355666 899999999876 568999999999999999987 33 455888
Q ss_pred EEcC
Q psy17863 303 CSHP 306 (341)
Q Consensus 303 ~~~~ 306 (341)
+++|
T Consensus 297 ~~~~ 300 (300)
T TIGR03866 297 VVRP 300 (300)
T ss_pred EeCC
Confidence 8775
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=180.21 Aligned_cols=236 Identities=17% Similarity=0.313 Sum_probs=181.6
Q ss_pred eeEecCcccceeEEEEecCC-CEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEe
Q psy17863 48 LKTYGGHAHEVNDATAACDS-SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126 (341)
Q Consensus 48 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 126 (341)
+..+.+|...|.|++=+|.. ..+++|+.||.|++||+.+.++..+++.|.+.|..+++.. ..+++++.|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 44568999999999999976 7799999999999999999999999999999999999986 57899999999999998
Q ss_pred cCCCCcCeEE------e-ecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEE
Q psy17863 127 KSRSHHPIQC------C-LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKL 199 (341)
Q Consensus 127 ~~~~~~~~~~------~-~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 199 (341)
+......+.+ + ....++.+++++ -.|.+||.....++..+...
T Consensus 137 ~~~p~~tilg~s~~~gIdh~~~~~~FaTcG--e~i~IWD~~R~~Pv~smswG---------------------------- 186 (433)
T KOG0268|consen 137 DGPPLHTILGKSVYLGIDHHRKNSVFATCG--EQIDIWDEQRDNPVSSMSWG---------------------------- 186 (433)
T ss_pred cCCcceeeeccccccccccccccccccccC--ceeeecccccCCccceeecC----------------------------
Confidence 7742111110 0 001122333333 35778887766665555432
Q ss_pred EEcccccCCCCeEEEEEccCC-CEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEE
Q psy17863 200 WTAEEDYGQEPIVDACFTRDC-QCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYK 278 (341)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 278 (341)
...|.++.|+|.. ..|+++..|+.|.+||++++.+++.+.-. ..-..+ +|+|++-.+++|++|..++.
T Consensus 187 --------~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-mRTN~I--swnPeafnF~~a~ED~nlY~ 255 (433)
T KOG0268|consen 187 --------ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT-MRTNTI--CWNPEAFNFVAANEDHNLYT 255 (433)
T ss_pred --------CCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee-ccccce--ecCccccceeecccccccee
Confidence 3346666677643 44677779999999999999988766422 122334 89998777899999999999
Q ss_pred EeeeCCC-ceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 279 WQLVDSS-QISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 279 wd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
+|++..+ ++.... +|...|.++.|||.|+-+++|+ |.+|+||.+..+.
T Consensus 256 ~DmR~l~~p~~v~~--dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 256 YDMRNLSRPLNVHK--DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred hhhhhhcccchhhc--ccceeEEEeccCCCcchhccccccceEEEeecCCCc
Confidence 9998754 445555 8999999999999999999999 9999999998764
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=166.60 Aligned_cols=257 Identities=18% Similarity=0.299 Sum_probs=199.9
Q ss_pred eeeCCcEEEEEEcc-CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecC---CCEEEEecCCCcEEEEECC
Q psy17863 10 DCKQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD---SSQIASGASDKSVILWEVT 85 (341)
Q Consensus 10 ~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iw~~~ 85 (341)
.+|+-.|..+.|-| |...+.+++.|.++++||..+.+....|+ ..+.|++-+++|- ..++|+|..|-.|++-|+.
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 46888999999998 66688899999999999999988888887 6778999999983 4468888889999999999
Q ss_pred CCceeeeecccCccEEEEEEcCCCc-EEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcc
Q psy17863 86 TGQPVRRWREHASKVTCVKFNEDSS-VVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 164 (341)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~ 164 (341)
+|..-.++.+|.+.|.++.|+|... .|++|+.||.|++||++... |..++.|..+.+.
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras---------------------gcf~~lD~hn~k~ 235 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS---------------------GCFRVLDQHNTKR 235 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc---------------------ceeEEeecccCcc
Confidence 9999999999999999999999555 57899999999999998643 3445555544333
Q ss_pred eeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceee
Q psy17863 165 ISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLE 244 (341)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 244 (341)
...+.. +..|.+.+..++|+.++.++++++.|..+++|+..+|+...
T Consensus 236 ~p~~~~---------------------------------n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 236 PPILKT---------------------------------NTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTL 282 (397)
T ss_pred Cccccc---------------------------------cccccceeeeeeecccchhhhhccCccceEEeecccCcccc
Confidence 222221 11246778889999999999999999999999998876422
Q ss_pred -eec--Ccccce-eEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcE
Q psy17863 245 -EYK--GHKSGD-FRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNV 319 (341)
Q Consensus 245 -~~~--~~~~~~-~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i 319 (341)
.+- .|.... ..+... +.+...++---.++.+.++++-++..+..+. .|...|.+.++-|+=+.+.++. |+.|
T Consensus 283 ~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~--~h~k~i~c~~~~~~fq~~~tg~~d~ni 359 (397)
T KOG4283|consen 283 REFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS--THLKRINCAAYRPDFEQCFTGDMNGNI 359 (397)
T ss_pred cccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee--cccceeeEEeecCchhhhhccccCCcc
Confidence 211 111111 011111 2233344444456899999999999999999 7888999999999999999999 9999
Q ss_pred EEEEc
Q psy17863 320 KLWTA 324 (341)
Q Consensus 320 ~vw~~ 324 (341)
..|-.
T Consensus 360 ~~w~p 364 (397)
T KOG4283|consen 360 YMWSP 364 (397)
T ss_pred ccccc
Confidence 99987
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=196.09 Aligned_cols=242 Identities=15% Similarity=0.252 Sum_probs=189.5
Q ss_pred cEEEEEEcc-CCCEEEEEeCCCeEEEEcCCC---cceeeEecCcccceeEEEEec-CCCEEEEecCCCcEEEEECCCCce
Q psy17863 15 AIRAVRFNV-DGSYCLTCGSDKKIKLWNPYR---NLLLKTYGGHAHEVNDATAAC-DSSQIASGASDKSVILWEVTTGQP 89 (341)
Q Consensus 15 ~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~ 89 (341)
.+..+.|+. +.++|||++..|.|.+||+.. .+++..|..|...++++.|++ ...+|++|+.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 345667764 467999999999999999987 677778999999999999998 567899999999999999999999
Q ss_pred eeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeee
Q psy17863 90 VRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 168 (341)
Q Consensus 90 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 168 (341)
..++.+....|.+++|+| .+..++++...|.+.+||++.... ....+
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r--------------------------------~~~k~ 216 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR--------------------------------CEKKL 216 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh--------------------------------HHHHh
Confidence 999999999999999999 677888888888888888876431 11111
Q ss_pred EeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecC
Q psy17863 169 IHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG 248 (341)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 248 (341)
..|.+++.++.|+|++.+||+|++|+.|+|||+.+.+.-....-
T Consensus 217 ------------------------------------~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI 260 (839)
T KOG0269|consen 217 ------------------------------------TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI 260 (839)
T ss_pred ------------------------------------hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEE
Confidence 12578899999999999999999999999999886654332222
Q ss_pred -cccceeEEEEEeCCCCCE-EEEec--CCCcEEEEeeeCCCce-EEEEeeeeccceEEEEEcC-CCcEEEEeC-CCcEEE
Q psy17863 249 -HKSGDFRIECCLDSKDSQ-IFCGS--SDGKIYKWQLVDSSQI-STLIHSVGKAVVNSLCSHP-TRKHIMSAC-GNNVKL 321 (341)
Q Consensus 249 -~~~~~~~~~~~~~~~~~~-l~~~~--~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~v 321 (341)
...++..+ .|-|...+ |++++ .|-.|+|||++..-.. .++. .|...++.++|.. |...|.+++ |+.|..
T Consensus 261 nTiapv~rV--kWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~--eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 261 NTIAPVGRV--KWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL--EHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred eecceeeee--eeccCccchhhhhhccccceEEEEeeccccccceeee--ccCccccceeccCCCceeeEeecCccHHHH
Confidence 23456666 67776655 66654 4788999999876554 4455 7999999999965 456788888 998765
Q ss_pred EEccccc
Q psy17863 322 WTAEEDY 328 (341)
Q Consensus 322 w~~~~~~ 328 (341)
-.++...
T Consensus 337 h~~knat 343 (839)
T KOG0269|consen 337 HLFKNAT 343 (839)
T ss_pred hhhhccc
Confidence 5554443
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.7e-27 Score=184.24 Aligned_cols=230 Identities=19% Similarity=0.311 Sum_probs=194.2
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCccee--eEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCcee
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLL--KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV 90 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 90 (341)
...|+++.+.|||+.|++|+.-.++.|||+....+. .++.......++++.+||.+..+++..||.|.|||+.+...+
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 467899999999999999999999999998765433 344444466888999999999999999999999999999999
Q ss_pred eeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEe
Q psy17863 91 RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH 170 (341)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~ 170 (341)
+.|++|.+.+.||.+++||..|.+|+-|++|+.||++++.. +..
T Consensus 545 rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq------------------------------------lqq 588 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ------------------------------------LQQ 588 (705)
T ss_pred ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh------------------------------------hhh
Confidence 99999999999999999999999999999999999887541 111
Q ss_pred eecCceEEEEEECCCCceEEEeCC-CceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEEEEecccccee
Q psy17863 171 SVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELL 243 (341)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 243 (341)
+.-...|.++..+|.+.+++++-. +.+.+....... |+.-|.++.|.+.|+++++.+.|+.+-.|...-|..+
T Consensus 589 hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasi 668 (705)
T KOG0639|consen 589 HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 668 (705)
T ss_pred hhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccce
Confidence 223456888999999999999876 677777766543 7888999999999999999999999999999888877
Q ss_pred eeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEee
Q psy17863 244 EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 281 (341)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (341)
...+. .+.|. .|.++.|++++++|+.|....+|.+
T Consensus 669 FqskE-~SsVl--sCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 669 FQSKE-SSSVL--SCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeccc-cCcce--eeeeccCceEEEecCCCcceEEEEE
Confidence 66653 33344 4588999999999999998888875
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-26 Score=177.68 Aligned_cols=210 Identities=20% Similarity=0.351 Sum_probs=166.4
Q ss_pred ceeeeEEeeeCCcEEEEEEccCC-CEEEEEeCCCeEEEEcCCCcc-------eeeEecCcccceeEEEEec-CCCEEEEe
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDG-SYCLTCGSDKKIKLWNPYRNL-------LLKTYGGHAHEVNDATAAC-DSSQIASG 73 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iw~~~~~~-------~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 73 (341)
..+-.+|.+|++.=..++|++.. -.|++++.|++|++||+.... +...+.+|...|..++|++ +..+++++
T Consensus 167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv 246 (422)
T KOG0264|consen 167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV 246 (422)
T ss_pred CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee
Confidence 34556899999988899999954 479999999999999986432 3456789999999999999 55678899
Q ss_pred cCCCcEEEEECC--CCceeeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeec
Q psy17863 74 ASDKSVILWEVT--TGQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSS 150 (341)
Q Consensus 74 ~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (341)
+.|+.+.|||++ +.++.....+|.++|.|++|+| ++..||+|+.|++|.+||+++...
T Consensus 247 ~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~------------------- 307 (422)
T KOG0264|consen 247 GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK------------------- 307 (422)
T ss_pred cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-------------------
Confidence 999999999999 5566777889999999999999 778899999999999999987542
Q ss_pred cCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC-CCEEEEeecC
Q psy17863 151 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD-CQCILTCSTD 229 (341)
Q Consensus 151 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d 229 (341)
++..+.. |...|.++.|+|. ...|++++.|
T Consensus 308 -------------~lh~~e~------------------------------------H~dev~~V~WSPh~etvLASSg~D 338 (422)
T KOG0264|consen 308 -------------PLHTFEG------------------------------------HEDEVFQVEWSPHNETVLASSGTD 338 (422)
T ss_pred -------------CceeccC------------------------------------CCcceEEEEeCCCCCceeEecccC
Confidence 1111111 3455666666664 4567888899
Q ss_pred CeEEEEecccc--------------ceeeeecCcccceeEEEEEeCCCCCE-EEEecCCCcEEEEeee
Q psy17863 230 ECLRLFDKATG--------------ELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLV 282 (341)
Q Consensus 230 ~~i~i~d~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~ 282 (341)
+.+.+||+..- +++..-.||...|..+ .|+|+..+ +++.++|+.+.||+..
T Consensus 339 ~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Df--sWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 339 RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDF--SWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CcEEEEeccccccccChhhhccCCcceeEEecCcccccccc--cCCCCCCeEEEEecCCceEEEeecc
Confidence 99999997642 2345567898888766 88898876 6788999999999975
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=190.11 Aligned_cols=246 Identities=19% Similarity=0.287 Sum_probs=187.7
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc----eeeEecC---cccceeEEEEec-CCCEEEEecCCCcEEEEECC
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL----LLKTYGG---HAHEVNDATAAC-DSSQIASGASDKSVILWEVT 85 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~----~~~~~~~---~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~ 85 (341)
...++|+.+++-..++.++. ..++||.+.... +...++. -...+..+.|.. +.++||+++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 45677888899888988884 467888755332 2112211 112455677865 56789999999999999998
Q ss_pred C---CceeeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccC
Q psy17863 86 T---GQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVD 161 (341)
Q Consensus 86 ~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~ 161 (341)
. .+.+..|..|...+.++.|++ ...+|++|+.||.|++||++..+....
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t--------------------------- 171 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST--------------------------- 171 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc---------------------------
Confidence 7 567778899999999999998 677899999999999999987552111
Q ss_pred CcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEcc-CCCEEEEeecCCeEEEEecccc
Q psy17863 162 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTR-DCQCILTCSTDECLRLFDKATG 240 (341)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~ 240 (341)
+.. . ...|..+.|+| .+..++++...|.+++||++..
T Consensus 172 ------~~~--n----------------------------------SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp 209 (839)
T KOG0269|consen 172 ------FRS--N----------------------------------SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP 209 (839)
T ss_pred ------ccc--c----------------------------------chhhhceeeccCCCceEEEecCCceEEEeeccCc
Confidence 000 1 24566677777 4678999999999999999865
Q ss_pred -ceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcE-EEEeC---
Q psy17863 241 -ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKH-IMSAC--- 315 (341)
Q Consensus 241 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~--- 315 (341)
++...+.+|.+++.++ .|+|++.+||+|+.|+.|+|||..+++....... ....+|..+.|-|+.++ ||+++
T Consensus 210 ~r~~~k~~AH~GpV~c~--nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~ 286 (839)
T KOG0269|consen 210 DRCEKKLTAHNGPVLCL--NWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI-NTIAPVGRVKWRPARSYHLATCSMVV 286 (839)
T ss_pred hhHHHHhhcccCceEEE--eecCCCceeeecCCCccEEEEeccCCCccceeEE-eecceeeeeeeccCccchhhhhhccc
Confidence 4577889999999988 8999999999999999999999876554333321 35678999999998764 56665
Q ss_pred CCcEEEEEcccccCCcc
Q psy17863 316 GNNVKLWTAEEDYGQAG 332 (341)
Q Consensus 316 d~~i~vw~~~~~~~~~~ 332 (341)
|-.|+|||+...+.+..
T Consensus 287 dtsV~VWDvrRPYIP~~ 303 (839)
T KOG0269|consen 287 DTSVHVWDVRRPYIPYA 303 (839)
T ss_pred cceEEEEeeccccccce
Confidence 78899999998876654
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-25 Score=185.80 Aligned_cols=237 Identities=15% Similarity=0.236 Sum_probs=193.7
Q ss_pred CcccceeEEEEecCCCEEEEecCCCcEEEEECCCC-ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC
Q psy17863 53 GHAHEVNDATAACDSSQIASGASDKSVILWEVTTG-QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH 131 (341)
Q Consensus 53 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 131 (341)
.|....+.++|.|+|+.|++++.||.|++|+..+. +....+..+...|.+++.. +.+|++++.+++|..|.+..+..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCc
Confidence 58888999999999999999999999999998766 4445555577888888775 44899999999999998887652
Q ss_pred cCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccccc----
Q psy17863 132 HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY---- 206 (341)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~---- 206 (341)
..+ +..+ .-+++.++++.+|++++.+++ -.|++.+.....
T Consensus 89 ~~i------------------------------L~Rf-----tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~ 133 (933)
T KOG1274|consen 89 DTI------------------------------LARF-----TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKV 133 (933)
T ss_pred cce------------------------------eeee-----eccceEEEEecCCcEEEeecCceeEEEEeccccchhee
Confidence 211 1111 134788999999999999887 467777766533
Q ss_pred ---CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcc------cceeEEEEEeCCCCCEEEEecCCCcEE
Q psy17863 207 ---GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK------SGDFRIECCLDSKDSQIFCGSSDGKIY 277 (341)
Q Consensus 207 ---~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~dg~i~ 277 (341)
|..+|.++.|+|++++|++.+-||.|++||+.++.+...+.+-. ..-.+...+|+|++..++..+.|+.|+
T Consensus 134 lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vk 213 (933)
T KOG1274|consen 134 LRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVK 213 (933)
T ss_pred ecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEE
Confidence 88999999999999999999999999999999988766664321 112334558999999999999999999
Q ss_pred EEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 278 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 278 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
+|+....+....+....+...+..+.|+|.|+|||+++ +|.|.||++++
T Consensus 214 vy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 214 VYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 99999999999888656666799999999999999999 99999999996
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=183.99 Aligned_cols=231 Identities=20% Similarity=0.318 Sum_probs=188.2
Q ss_pred eeEEeeeCCcEEE-EEEcc-CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 6 VQTIDCKQGAIRA-VRFNV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 6 ~~~l~~h~~~v~~-~~~~~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
.+.+.+|.+-|.+ ++|-+ ++-.+++|+.|.+|.+|...+..++..+++|...|.++....++. +++|+.|.++++|.
T Consensus 50 ~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~ 128 (745)
T KOG0301|consen 50 THAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR 128 (745)
T ss_pred ceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEec
Confidence 3567788888888 88875 555799999999999999999999999999999999999887776 99999999999997
Q ss_pred CCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC------CCCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS------RSHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
. +++...+++|...|++++..|++ .+++|+.|.+|++|.-.+ ++...+..+..-++..+++++.||.|+.|
T Consensus 129 ~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w 205 (745)
T KOG0301|consen 129 I--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLW 205 (745)
T ss_pred c--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCchhhhhccchhheeeeEEecCCCeEeecCCceEEEE
Confidence 5 56777799999999999999987 799999999999998543 33456666777778888999999999999
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEec
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDK 237 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 237 (341)
++ +++.+..... |..-+.+++..+++..++++++|+++++|+.
T Consensus 206 ~~-~ge~l~~~~g------------------------------------htn~vYsis~~~~~~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 206 DL-DGEVLLEMHG------------------------------------HTNFVYSISMALSDGLIVSTGEDRTLRIWKK 248 (745)
T ss_pred ec-cCceeeeeec------------------------------------cceEEEEEEecCCCCeEEEecCCceEEEeec
Confidence 98 4455444432 2344666676777788999999999999997
Q ss_pred cccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeee
Q psy17863 238 ATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 282 (341)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (341)
. ++.+.+.-....+++.. .-++| -+++|++||.||||...
T Consensus 249 ~--e~~q~I~lPttsiWsa~--~L~Ng-DIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 249 D--ECVQVITLPTTSIWSAK--VLLNG-DIVVGGSDGRVRVFTVD 288 (745)
T ss_pred C--ceEEEEecCccceEEEE--EeeCC-CEEEeccCceEEEEEec
Confidence 6 77778876666777773 33444 48889999999999875
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-24 Score=160.43 Aligned_cols=245 Identities=17% Similarity=0.270 Sum_probs=182.0
Q ss_pred cCcccceeEEEEecCCCEEEEecCCCcEEEEECCCC----ceeeeecccCccEEEEEEcC--CCcEEEEecCCCeEEEEE
Q psy17863 52 GGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG----QPVRRWREHASKVTCVKFNE--DSSVVISGSQDNTVMMWD 125 (341)
Q Consensus 52 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd 125 (341)
.+|..-|.++.|.+.|+++++|+.|++++|||.++. .+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 468889999999999999999999999999997544 45667788999999999965 789999999999999998
Q ss_pred ecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCC--ceEEE-eCCCceEEEEc
Q psy17863 126 VKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR--KHIMS-ACGNNVKLWTA 202 (341)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~i~~~~~ 202 (341)
-..... +.. ..+-............+..+.|.|.. -.+++ ..+|.++||+.
T Consensus 90 E~~~~~-------------------~~~-------~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA 143 (361)
T KOG2445|consen 90 EQEKSE-------------------EAH-------GRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEA 143 (361)
T ss_pred eccccc-------------------ccc-------cceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEec
Confidence 642210 000 01111122223355679999999974 33444 34799999987
Q ss_pred cccc--------------------CCCCeEEEEEccC---CCEEEEeecC-----CeEEEEecccc----ceeeeecCcc
Q psy17863 203 EEDY--------------------GQEPIVDACFTRD---CQCILTCSTD-----ECLRLFDKATG----ELLEEYKGHK 250 (341)
Q Consensus 203 ~~~~--------------------~~~~i~~~~~~~~---~~~l~~~~~d-----~~i~i~d~~~~----~~~~~~~~~~ 250 (341)
.... +..+..|+.|+|. ..+|++|+.+ +.++||....+ ..+.++.+|.
T Consensus 144 ~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~ 223 (361)
T KOG2445|consen 144 PDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT 223 (361)
T ss_pred CCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC
Confidence 6522 4567788999874 4578887766 47888875433 3467788999
Q ss_pred cceeEEEEEeCCC--CCEEEEecCCCcEEEEeeeCCC--------------------ceEEEEeeeeccceEEEEEcCCC
Q psy17863 251 SGDFRIECCLDSK--DSQIFCGSSDGKIYKWQLVDSS--------------------QISTLIHSVGKAVVNSLCSHPTR 308 (341)
Q Consensus 251 ~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~ 308 (341)
.+|+.+.++.+.. -..||+++.|| |+||.+.... .+..+. .|++.|..+.|+-.|
T Consensus 224 dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~--~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 224 DPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD--DHNGEVWRVRWNMTG 300 (361)
T ss_pred CcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc--CCCCceEEEEEeeee
Confidence 9999994443322 24699999999 9999987311 122233 789999999999999
Q ss_pred cEEEEeC-CCcEEEEEcc
Q psy17863 309 KHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 309 ~~l~~~~-d~~i~vw~~~ 325 (341)
..|++.+ ||+||+|...
T Consensus 301 tiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eEEeecCCCceeeehhhh
Confidence 9999999 9999999854
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=171.54 Aligned_cols=267 Identities=18% Similarity=0.290 Sum_probs=199.5
Q ss_pred eCCcEEEEEEccC----CCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCC-CEEEEecCCCcEEEEECCC
Q psy17863 12 KQGAIRAVRFNVD----GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDS-SQIASGASDKSVILWEVTT 86 (341)
Q Consensus 12 h~~~v~~~~~~~~----~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~ 86 (341)
|...-..++|+-+ ..++|+|+.-|.|+|.|+.+++....+.+|...|+.+.++|+. +++++++.|..|++|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 6667778888754 4589999999999999999999999999999999999999964 7899999999999999999
Q ss_pred Cceeeee---cccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcC-eEE-eecCCCceEEEeeccCeEEEEEccC
Q psy17863 87 GQPVRRW---REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP-IQC-CLDSKDSQIFCGSSDGKIYKWQLVD 161 (341)
Q Consensus 87 ~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~-~~~~~~~~~~~~~~~g~i~~~d~~~ 161 (341)
..++..+ .+|.+.|.++.|++++.++++++.|.++++|++...+... +.. ....+ +++
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~---------~~t-------- 230 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSP---------NKT-------- 230 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCC---------CCc--------
Confidence 9998877 5699999999999999999999999999999998543110 000 00000 000
Q ss_pred CcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEc-ccccCCCCeEEEEEccCCCEEEEeecCCeEEEEec-cc
Q psy17863 162 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTA-EEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDK-AT 239 (341)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~-~~ 239 (341)
..+..+. ...+.++ .+..|...|.|+.|-. +++++-+-++.|..|.. +-
T Consensus 231 ~~pfpt~---------------------------~~~fp~fst~diHrnyVDCvrw~g--d~ilSkscenaI~~w~pgkl 281 (385)
T KOG1034|consen 231 TRPFPTP---------------------------KTHFPDFSTTDIHRNYVDCVRWFG--DFILSKSCENAIVCWKPGKL 281 (385)
T ss_pred cCcCCcc---------------------------ccccccccccccccchHHHHHHHh--hheeecccCceEEEEecchh
Confidence 0000000 0011111 1122445555555543 66777777888888876 11
Q ss_pred c-------------ceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCce--EEEEeeeeccceEEEEE
Q psy17863 240 G-------------ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQI--STLIHSVGKAVVNSLCS 304 (341)
Q Consensus 240 ~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~ 304 (341)
+ ..+.++.-....++.+.+++++-++.||.|...|.|++||++..++. .++........|+..+|
T Consensus 282 ~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sf 361 (385)
T KOG1034|consen 282 EESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSF 361 (385)
T ss_pred hhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeee
Confidence 1 22445566677788999999999999999999999999999887663 33333344578999999
Q ss_pred cCCCcEEEEeC-CCcEEEEEc
Q psy17863 305 HPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 305 ~~~~~~l~~~~-d~~i~vw~~ 324 (341)
+.|+..|+..+ |++|--||.
T Consensus 362 S~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 362 SRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cccCcEEEEEeCCCcEEEEEe
Confidence 99999999998 999988875
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=182.34 Aligned_cols=246 Identities=19% Similarity=0.310 Sum_probs=185.8
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeE--ecCcccceeEEEEecCC-CEEEEecCCCcEEEE
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKT--YGGHAHEVNDATAACDS-SQIASGASDKSVILW 82 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw 82 (341)
++....|.+.|..+.|-|....|++++.|.++++||+++.++... +.+|.+.|.+++|.|.+ ..+++|+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 456678999999999999777899999999999999999888777 88999999999999955 568899999999999
Q ss_pred ECCCCc---------------------------eeeeecccCccEEE---EEEcCCCcEEEEecC-CCeEEEEEecCCCC
Q psy17863 83 EVTTGQ---------------------------PVRRWREHASKVTC---VKFNEDSSVVISGSQ-DNTVMMWDVKSRSH 131 (341)
Q Consensus 83 ~~~~~~---------------------------~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~ 131 (341)
|++-.. .+...+.+...|.+ +.+..|...|++++. |+.|++||++....
T Consensus 173 D~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 986321 11122334455555 556668888999888 99999999987431
Q ss_pred --------------------cCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEE
Q psy17863 132 --------------------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS 191 (341)
Q Consensus 132 --------------------~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (341)
.....+....+.++++.+.|+.|+.|++.....-.........
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~----------------- 315 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL----------------- 315 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcc-----------------
Confidence 1233445556678888888999999998765432222111100
Q ss_pred eCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccc-eeeeecCcccceeEEEEEeCCCCCEEEEe
Q psy17863 192 ACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGE-LLEEYKGHKSGDFRIECCLDSKDSQIFCG 270 (341)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (341)
.......-..+|++.++++|+.|...++|.+.+.+ ....+.+|...++.++++.++... ++++
T Consensus 316 ---------------~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~-v~Tc 379 (720)
T KOG0321|consen 316 ---------------NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTP-VATC 379 (720)
T ss_pred ---------------cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCC-ceee
Confidence 01112234578999999999999999999988765 466778999999999888787775 5555
Q ss_pred cCCCcEEEEeeeCC
Q psy17863 271 SSDGKIYKWQLVDS 284 (341)
Q Consensus 271 ~~dg~i~iwd~~~~ 284 (341)
++|..+++|++.++
T Consensus 380 SdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 380 SDDFRVKIWRLSNG 393 (720)
T ss_pred ccCcceEEEeccCc
Confidence 99999999999665
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=180.92 Aligned_cols=268 Identities=18% Similarity=0.339 Sum_probs=204.9
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeec
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 94 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 94 (341)
.|..++|-|||..|+.+. +..+.+||+..|.++.++++|...|+|++|+.||+.+++|+.|..|.+|+..- +-+-.+
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkY- 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKY- 90 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeee-
Confidence 899999999999888766 45799999999999999999999999999999999999999999999998532 223333
Q ss_pred ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC------Cc-CeEEeecCCCceEEEeeccCeEEEEEccCCcceee
Q psy17863 95 EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS------HH-PIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST 167 (341)
Q Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~------~~-~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~ 167 (341)
.|.+.|.|+.|+|-...|++++-. ..-+|...... .. ...+....++.+++.|-.+|+|.+-+-...+.. .
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~-~ 168 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV-K 168 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce-E
Confidence 499999999999988889988754 56788766532 12 233445556668888999999988754333222 2
Q ss_pred eEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC-----CCEEEEeecCCeEEEEeccccce
Q psy17863 168 LIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD-----CQCILTCSTDECLRLFDKATGEL 242 (341)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~d~~i~i~d~~~~~~ 242 (341)
+..+.+ .+.+|.+++|+|. ...+++.....++.+|.+. |+.
T Consensus 169 I~Rpgg---------------------------------~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~ 214 (1081)
T KOG1538|consen 169 IERPGG---------------------------------SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQ 214 (1081)
T ss_pred EeCCCC---------------------------------CCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-cee
Confidence 222111 2455666666664 2467788888888888875 555
Q ss_pred eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEE
Q psy17863 243 LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKL 321 (341)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~v 321 (341)
+..-+.-.-...++ .+.++|.+++.|+.|+.+.+|. +.|-.+.++. .....|..++..|++++++.|+ ||+|.-
T Consensus 215 Igk~r~L~FdP~Ci--sYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg--~~D~WIWtV~~~PNsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 215 IGKDRALNFDPCCI--SYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVG--EQDSWIWTVQAKPNSQYVVVGCQDGTIAC 289 (1081)
T ss_pred ecccccCCCCchhh--eeccCCcEEEEccCCCceEEEe-ecCeEEeecc--ccceeEEEEEEccCCceEEEEEccCeeeh
Confidence 54333222223344 7889999999999999999997 7788888877 5778999999999999999999 999999
Q ss_pred EEccc
Q psy17863 322 WTAEE 326 (341)
Q Consensus 322 w~~~~ 326 (341)
|++-.
T Consensus 290 yNl~f 294 (1081)
T KOG1538|consen 290 YNLIF 294 (1081)
T ss_pred hhhHH
Confidence 88754
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=161.54 Aligned_cols=274 Identities=17% Similarity=0.310 Sum_probs=201.7
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEcCCCc------------ceeeEec-CcccceeEEEEe-------cCCCEEEEecC
Q psy17863 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRN------------LLLKTYG-GHAHEVNDATAA-------CDSSQIASGAS 75 (341)
Q Consensus 16 v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~------------~~~~~~~-~~~~~v~~~~~~-------~~~~~l~~~~~ 75 (341)
...+.|+|||..|++-+.|..+.+|++... +...+++ .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 457889999999999999999999986421 0111111 134567777775 56788999999
Q ss_pred CCcEEEEECCCCceeeeecc--cCc---cEEEEEEcCCCcEEEEecCCCeEEEEEe-cCCCCcCeEEeecCCCceEEEee
Q psy17863 76 DKSVILWEVTTGQPVRRWRE--HAS---KVTCVKFNEDSSVVISGSQDNTVMMWDV-KSRSHHPIQCCLDSKDSQIFCGS 149 (341)
Q Consensus 76 dg~i~iw~~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~ 149 (341)
+.-|++||.-+|+....++. |.. ...+++|+|||.+|++|. ...|+++|+ +.+...+.......
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~--------- 201 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTK--------- 201 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhc---------
Confidence 99999999999998877764 333 346899999999998875 678999998 33331111110000
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCc-eEEEeC-CCceEEEEcccc-------cCCCCeEEEEEccCC
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK-HIMSAC-GNNVKLWTAEED-------YGQEPIVDACFTRDC 220 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~i~~~~~~~~-------~~~~~i~~~~~~~~~ 220 (341)
+ .....+.+.+++++|... .++.++ ...+-||.-... .|.+.|+.+.|.++|
T Consensus 202 ------------~-------k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 202 ------------G-------KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred ------------c-------cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc
Confidence 0 011235688999999776 555555 355555554432 388999999999999
Q ss_pred CEEEEeec-CCeEEEEecccc-ceeeeecCccc-ceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC-CCceEEEEeeeec
Q psy17863 221 QCILTCST-DECLRLFDKATG-ELLEEYKGHKS-GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD-SSQISTLIHSVGK 296 (341)
Q Consensus 221 ~~l~~~~~-d~~i~i~d~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~ 296 (341)
+.|++|.+ |-.|..||++.. .++..+..|.. .-..+-+...|.+++|++|+.||.|++||+++ +..+..+. .+.
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~--~~s 340 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG--NYS 340 (406)
T ss_pred CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc--ccc
Confidence 99999886 568999999854 56677777765 33456667889999999999999999999998 67677777 788
Q ss_pred cceEEEEEcCCCcEEEEeCCCcEE
Q psy17863 297 AVVNSLCSHPTRKHIMSACGNNVK 320 (341)
Q Consensus 297 ~~v~~~~~~~~~~~l~~~~d~~i~ 320 (341)
..++.++++|--.++|+++...+.
T Consensus 341 d~vNgvslnP~mpilatssGqr~f 364 (406)
T KOG2919|consen 341 DTVNGVSLNPIMPILATSSGQRIF 364 (406)
T ss_pred ccccceecCcccceeeeccCceee
Confidence 999999999998888888744433
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=166.00 Aligned_cols=202 Identities=17% Similarity=0.304 Sum_probs=159.0
Q ss_pred eeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEe
Q psy17863 91 RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH 170 (341)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~ 170 (341)
..+++|.+.|++++|+.||++|++++.|+.|++|+++...... -+.+ ..
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e----------------------------Hr~~---R~ 128 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE----------------------------HRCI---RQ 128 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh----------------------------hhHh---hc
Confidence 4568999999999999999999999999999999988632111 0111 11
Q ss_pred eecCceEEEEEECCCCceEEEeC--CCceEEEEccccc-------------------CCCCeEEEEEccCCCEEEEeecC
Q psy17863 171 SVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY-------------------GQEPIVDACFTRDCQCILTCSTD 229 (341)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~-------------------~~~~i~~~~~~~~~~~l~~~~~d 229 (341)
.......+.+.|.||-+.++... ++++++|.+.... |..++..+-...++++|++++.|
T Consensus 129 nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~d 208 (420)
T KOG2096|consen 129 NVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLD 208 (420)
T ss_pred cccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCC
Confidence 11223467888999888776654 5788888775432 55677788888899999999999
Q ss_pred CeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCC--------CceEEEEeeeeccceEE
Q psy17863 230 ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS--------SQISTLIHSVGKAVVNS 301 (341)
Q Consensus 230 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~v~~ 301 (341)
..|.+|+++ |+.+..+......-+.. +.+|+|+++++++..-.|++|++--+ ..+..+. +|...|..
T Consensus 209 t~i~lw~lk-Gq~L~~idtnq~~n~~a--avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk--GH~saV~~ 283 (420)
T KOG2096|consen 209 TKICLWDLK-GQLLQSIDTNQSSNYDA--AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK--GHQSAVLA 283 (420)
T ss_pred CcEEEEecC-Cceeeeeccccccccce--eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec--cchhheee
Confidence 999999998 88888887655544433 89999999999999999999987422 2344555 99999999
Q ss_pred EEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 302 LCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 302 ~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
++|+|+.+.+++.+ ||+++|||.+-.+
T Consensus 284 ~aFsn~S~r~vtvSkDG~wriwdtdVrY 311 (420)
T KOG2096|consen 284 AAFSNSSTRAVTVSKDGKWRIWDTDVRY 311 (420)
T ss_pred eeeCCCcceeEEEecCCcEEEeeccceE
Confidence 99999999999999 9999999987543
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-24 Score=158.99 Aligned_cols=234 Identities=15% Similarity=0.207 Sum_probs=174.6
Q ss_pred cccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--
Q psy17863 54 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH-- 131 (341)
Q Consensus 54 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-- 131 (341)
....|.++.|+|.+..|++++.||++++||+........++ |..++.+++|.+ ...+++|+.||.|+.+|++++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCccee
Confidence 35789999999999999999999999999999887666665 899999999987 45799999999999999998653
Q ss_pred -----cCeEEeec-CCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccc
Q psy17863 132 -----HPIQCCLD-SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED 205 (341)
Q Consensus 132 -----~~~~~~~~-~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 205 (341)
.++.++.. ...+.+++|+.|++|++||.+.......+..
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~----------------------------------- 134 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ----------------------------------- 134 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-----------------------------------
Confidence 33444333 4467889999999999999886333222211
Q ss_pred cCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecC--cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 206 YGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG--HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 206 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
...|.++ +-.|+.|++|+.+..+.+||+++.......+. ..-.+.++ +..|++.-.++++-||.|.+=.++.
T Consensus 135 --~kkVy~~--~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v--~~~pn~eGy~~sSieGRVavE~~d~ 208 (323)
T KOG1036|consen 135 --GKKVYCM--DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCV--ALVPNGEGYVVSSIEGRVAVEYFDD 208 (323)
T ss_pred --CceEEEE--eccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEE--EEecCCCceEEEeecceEEEEccCC
Confidence 1123333 33466799999999999999997665432222 22334555 5667777789999999998876665
Q ss_pred C----CceEEEEeeeec---------cceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCcc
Q psy17863 284 S----SQISTLIHSVGK---------AVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQAG 332 (341)
Q Consensus 284 ~----~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~~ 332 (341)
. +....++ -|. -+|++++|+|-...||||+ ||.|.+||+.......+
T Consensus 209 s~~~~skkyaFk--CHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q 269 (323)
T KOG1036|consen 209 SEEAQSKKYAFK--CHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQ 269 (323)
T ss_pred chHHhhhceeEE--eeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhh
Confidence 5 3333444 232 4899999999999999999 99999999987654443
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=197.47 Aligned_cols=274 Identities=16% Similarity=0.314 Sum_probs=207.1
Q ss_pred EEEEEccCCC-EEEEEe----------CCCeEEEEcCCC--c----ceeeEecCcccceeEEEEecCCCE----EEEecC
Q psy17863 17 RAVRFNVDGS-YCLTCG----------SDKKIKLWNPYR--N----LLLKTYGGHAHEVNDATAACDSSQ----IASGAS 75 (341)
Q Consensus 17 ~~~~~~~~~~-~l~t~~----------~dg~i~iw~~~~--~----~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~ 75 (341)
..++|+|++. ++|+|. .+.++.||.+.. . +.+..+. -....+.++|.+.+.. |+.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 4678999986 566542 355666665432 2 2333333 4567899999987765 888899
Q ss_pred CCcEEEEECCC---C---ceeeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCC----------cCeEEee
Q psy17863 76 DKSVILWEVTT---G---QPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSH----------HPIQCCL 138 (341)
Q Consensus 76 dg~i~iw~~~~---~---~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~ 138 (341)
||.|.+||... + ..+.++..|.+.|..+.|++ .+++|++|+.||.|.|||+++.+. ..+.++.
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 99999999865 2 34566778999999999999 455999999999999999987542 1222333
Q ss_pred cCC--CceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEE
Q psy17863 139 DSK--DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACF 216 (341)
Q Consensus 139 ~~~--~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 216 (341)
+.. ...|++++.+|...+||++..+++..+........+..++|+|+..
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a----------------------------- 219 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA----------------------------- 219 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc-----------------------------
Confidence 322 2368889999999999999998887776665555566666666542
Q ss_pred ccCCCEEEEeecC---CeEEEEecccc-ceeeeecCcccceeEEEEEeCCCC-CEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 217 TRDCQCILTCSTD---ECLRLFDKATG-ELLEEYKGHKSGDFRIECCLDSKD-SQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 217 ~~~~~~l~~~~~d---~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
..+++++.| -.|.+||++.- .+++++++|...+..+ .|.+.+ .+|++++.|+.|.+|+.++++.+..+.
T Consensus 220 ----Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~Gilsl--sWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 220 ----TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSL--SWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred ----eeeeeecCCCCCceeEeecccccCCchhhhcccccceeee--ccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 234444444 35999998754 5688899999999988 555655 789999999999999999999999999
Q ss_pred eeeeccceEEEEEcCCCc-EEEEeC-CCcEEEEEccccc
Q psy17863 292 HSVGKAVVNSLCSHPTRK-HIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 292 ~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~vw~~~~~~ 328 (341)
.....+..+.|+|... .+++++ ||.|.|+.+.+..
T Consensus 294 --~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 294 --AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred --CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 6788999999999887 666777 9999999988654
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=162.95 Aligned_cols=235 Identities=15% Similarity=0.202 Sum_probs=169.7
Q ss_pred eeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEe
Q psy17863 58 VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCC 137 (341)
Q Consensus 58 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 137 (341)
..|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|+++|+.|++++.|..|.+||+..+.. ....
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~--l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP--LKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc--eeEE
Confidence 78999999999999999999999999999998899999999999999999999999999999999999987762 1111
Q ss_pred ecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceE--EEeCCCceEEEEccccc---------
Q psy17863 138 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHI--MSACGNNVKLWTAEEDY--------- 206 (341)
Q Consensus 138 ~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~--------- 206 (341)
.+ .++|....|+|..... ++--+..-.+.++....
T Consensus 104 rf----------------------------------~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d 149 (405)
T KOG1273|consen 104 RF----------------------------------DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDD 149 (405)
T ss_pred Ec----------------------------------cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCc
Confidence 11 1123333333322111 11111111111111110
Q ss_pred --CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcc-cceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 207 --GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK-SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 207 --~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
....-.+..|.+.|+++++|...|.+.++|..+.+++..++-.. ..|..+ .++..|++|+.-+.|..|+.|+++.
T Consensus 150 ~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I--~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 150 GDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQI--IVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred cccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEE--EEeccCcEEEEecCCceEEEEehhh
Confidence 11222334688999999999999999999999999998887655 566666 6788899999999999999999863
Q ss_pred C-------C--ceEEEEeeeeccceEEEEEcCCCcEEEEeC--CCcEEEEEcccccCC
Q psy17863 284 S-------S--QISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 284 ~-------~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~~~~~ 330 (341)
- + +.++++..-....=.+++|+.+|.|+++++ ...++||.-..+...
T Consensus 228 i~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLV 285 (405)
T KOG1273|consen 228 IDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLV 285 (405)
T ss_pred hcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCccee
Confidence 1 1 112222111234556789999999999998 678999998766433
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=169.10 Aligned_cols=241 Identities=20% Similarity=0.335 Sum_probs=178.7
Q ss_pred EEEEEcc-------CCCEEEEEeCCCeEEEEcCCCc---ceee------------------EecCcccceeEEEEecC-C
Q psy17863 17 RAVRFNV-------DGSYCLTCGSDKKIKLWNPYRN---LLLK------------------TYGGHAHEVNDATAACD-S 67 (341)
Q Consensus 17 ~~~~~~~-------~~~~l~t~~~dg~i~iw~~~~~---~~~~------------------~~~~~~~~v~~~~~~~~-~ 67 (341)
.|++|.. -|+++|.|+.|..|.|||+.=. .+.. .-.+|+..|..++|+.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4666633 2679999999999999996411 0111 12368888999999874 4
Q ss_pred CEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEE
Q psy17863 68 SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIF 146 (341)
Q Consensus 68 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 146 (341)
+.||+|+.|.+|++||+.++++..++..|.+.|.++.|+| ....|++|+.|++|.+.|.+......
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~------------- 323 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG------------- 323 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC-------------
Confidence 5789999999999999999999999999999999999999 67899999999999999988532110
Q ss_pred EeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCC-CEEEE
Q psy17863 147 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDC-QCILT 225 (341)
Q Consensus 147 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~l~~ 225 (341)
+-|.+ .+.|..++|.|.. ..+++
T Consensus 324 --------~~wk~------------------------------------------------~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 324 --------KEWKF------------------------------------------------DGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred --------ceEEe------------------------------------------------ccceEEEEecCCCceeEEE
Confidence 01111 2334555555543 34778
Q ss_pred eecCCeEEEEecccc-ceeeeecCcccceeEEEEEeCCC-CCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEE
Q psy17863 226 CSTDECLRLFDKATG-ELLEEYKGHKSGDFRIECCLDSK-DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLC 303 (341)
Q Consensus 226 ~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 303 (341)
++.||+++-+|++.. +++.+++.|..+|..+ ++++. -.++++++.|+.|++|++..............-+...|.+
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl--~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~ 425 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGL--SVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFA 425 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCCcceE--EecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecc
Confidence 889999999999875 8999999999999999 44443 3478999999999999987654433222112234577788
Q ss_pred EcCCCc-EEEEeC-CCcEEEEEccccc
Q psy17863 304 SHPTRK-HIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 304 ~~~~~~-~l~~~~-d~~i~vw~~~~~~ 328 (341)
+.|+-. .||.|+ .+.++|||+.+..
T Consensus 426 ~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 426 LDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred cCCCcceEEEecCccceEEEeecccCh
Confidence 888765 455566 6779999987654
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=163.31 Aligned_cols=207 Identities=18% Similarity=0.318 Sum_probs=158.2
Q ss_pred cCcccceeEEEEec-CCCEEEEecCCCcEEEEECCCCc------------ee---eeecccCccEEEEEEcC-CCcEEEE
Q psy17863 52 GGHAHEVNDATAAC-DSSQIASGASDKSVILWEVTTGQ------------PV---RRWREHASKVTCVKFNE-DSSVVIS 114 (341)
Q Consensus 52 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~------------~~---~~~~~~~~~v~~~~~~~-~~~~l~~ 114 (341)
+.|.+.|+++...+ .|+++++|+.||.|.+||+++.. ++ ..-.+|.-.|..+.|.| |...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45889999999987 78999999999999999997643 10 11135777889999988 6667888
Q ss_pred ecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC
Q psy17863 115 GSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG 194 (341)
Q Consensus 115 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (341)
++.|.++++||.++.+. ...+. .
T Consensus 120 sSFDhtlKVWDtnTlQ~---------------------------------a~~F~---m--------------------- 142 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQE---------------------------------AVDFK---M--------------------- 142 (397)
T ss_pred ccccceEEEeeccccee---------------------------------eEEee---c---------------------
Confidence 88888888888876541 11111 1
Q ss_pred CceEEEEcccccCCCCeEEEEEcc---CCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCE-EEEe
Q psy17863 195 NNVKLWTAEEDYGQEPIVDACFTR---DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCG 270 (341)
Q Consensus 195 ~~i~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~ 270 (341)
++.|.+-+++| ..-++++|..+-.|++-|+.+|...+.+.+|...|..+ .|+|...+ |++|
T Consensus 143 -------------e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV--~Wsp~~e~vLatg 207 (397)
T KOG4283|consen 143 -------------EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAV--EWSPSSEWVLATG 207 (397)
T ss_pred -------------CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEE--EeccCceeEEEec
Confidence 12233333333 23458889999999999999999999999999999888 67777665 7899
Q ss_pred cCCCcEEEEeeeCC-CceEEEE------------eeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 271 SSDGKIYKWQLVDS-SQISTLI------------HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 271 ~~dg~i~iwd~~~~-~~~~~~~------------~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
+.||.|++||++.. .+...+. ...|.+.|..++|+.++.++++.+ |..+++|+...+...
T Consensus 208 saDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 208 SADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNT 281 (397)
T ss_pred CCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccc
Confidence 99999999999764 2322221 336788999999999999999999 999999999877543
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=160.82 Aligned_cols=289 Identities=15% Similarity=0.211 Sum_probs=201.2
Q ss_pred CCceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec-CcccceeEEEEecCCCEEEEecCCCcE
Q psy17863 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-GHAHEVNDATAACDSSQIASGASDKSV 79 (341)
Q Consensus 1 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i 79 (341)
+|..+...|++|.+.|+++.|..+++ |.+|..-|.|++|++.+......++ .+...|+.+.--|+ ..+.+-+.|+.+
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL 79 (323)
T ss_pred CCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence 35678889999999999999988775 9999999999999999998888888 67788999998887 568888999999
Q ss_pred EEEECCCCceeeeecccCccEEEEEEcC-----CC----cEEEEec------------CCCeEEEEEecCC-CCcCeEEe
Q psy17863 80 ILWEVTTGQPVRRWREHASKVTCVKFNE-----DS----SVVISGS------------QDNTVMMWDVKSR-SHHPIQCC 137 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~-----~~----~~l~~~~------------~d~~i~iwd~~~~-~~~~~~~~ 137 (341)
.+|++.-+..+.. |.-.+.++.|.+ ++ ..++.-+ .--.+.+-|-... +.....+.
T Consensus 80 ~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 80 ILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred EEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence 9999976544322 222333333322 11 1111111 1112222221111 11112222
Q ss_pred e----cCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEE
Q psy17863 138 L----DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVD 213 (341)
Q Consensus 138 ~----~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~ 213 (341)
. ....-.+++|.++|.+.+||+.++..+..+...... + .....|..++.+
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv--~------------------------~~~ash~qpvls 210 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKV--E------------------------SPNASHKQPVLS 210 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeecccccccc--c------------------------cchhhccCccee
Confidence 1 111226788899999999999887444333211000 0 011125788999
Q ss_pred EEEccCCCEEEEeecCCeEEEEecccc--ce--eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEE
Q psy17863 214 ACFTRDCQCILTCSTDECLRLFDKATG--EL--LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST 289 (341)
Q Consensus 214 ~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 289 (341)
+.+.+....=++|+.+..+..|++... .+ ..++.-....+..+ .+-||++.+|+++.|+.|+||..++.+++..
T Consensus 211 ldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gv--rIRpD~KIlATAGWD~RiRVyswrtl~pLAV 288 (323)
T KOG0322|consen 211 LDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGV--RIRPDGKILATAGWDHRIRVYSWRTLNPLAV 288 (323)
T ss_pred eeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccce--EEccCCcEEeecccCCcEEEEEeccCCchhh
Confidence 999887666778888888999987643 21 12222223334455 6779999999999999999999999999999
Q ss_pred EEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEc
Q psy17863 290 LIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 290 ~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~ 324 (341)
+. -|.+.|++++|+|+...+|+++ |++|.+|++
T Consensus 289 Lk--yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 289 LK--YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hh--hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99 8999999999999999999999 999999986
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-24 Score=164.73 Aligned_cols=289 Identities=16% Similarity=0.199 Sum_probs=189.1
Q ss_pred CceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCC--------C--------cceeeEecCcccceeEEEEec
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPY--------R--------NLLLKTYGGHAHEVNDATAAC 65 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~--------~--------~~~~~~~~~~~~~v~~~~~~~ 65 (341)
..+.+..|..|..+|+++.|+|+|++||+|+.+|.|.+|... + ....+.+.+|...|..++|+|
T Consensus 54 ~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~ 133 (434)
T KOG1009|consen 54 KVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP 133 (434)
T ss_pred eEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC
Confidence 345677899999999999999999999999999999999755 2 223456778999999999999
Q ss_pred CCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceE
Q psy17863 66 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQI 145 (341)
Q Consensus 66 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 145 (341)
++.++++++.|..+++||+..|+....+..|...+..++|.|-++++++-+.|...+.+.+...+.. ..... ....
T Consensus 134 d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~--~~~~~--~~m~ 209 (434)
T KOG1009|consen 134 DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVI--KRHGL--DIMP 209 (434)
T ss_pred CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeee--eeeee--eEee
Confidence 9999999999999999999999999999999999999999999999999999987777766543311 11000 0000
Q ss_pred EEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEE
Q psy17863 146 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILT 225 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 225 (341)
+-....+. ++..+.+.....+.-...++|+|+|.+++...+- +...+...
T Consensus 210 ~~~~~~~e--------~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~--------------------~~~g~~~~-- 259 (434)
T KOG1009|consen 210 AKAFNERE--------GKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL--------------------FKVGGGVF-- 259 (434)
T ss_pred ecccCCCC--------cceeeeeecCchhhhhhhcccCCCCcEEEcccce--------------------eeeCCcee--
Confidence 00111111 1111111111122334556666777666554320 00000000
Q ss_pred eecCCeEEEEeccc-cceeeeecCcccceeEEEEE---------------eCCCCCEEEEecCCCcEEEEeeeCCCceEE
Q psy17863 226 CSTDECLRLFDKAT-GELLEEYKGHKSGDFRIECC---------------LDSKDSQIFCGSSDGKIYKWQLVDSSQIST 289 (341)
Q Consensus 226 ~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 289 (341)
-+..++|+-.. .++...+.+...+...++++ +.-.-+.+++-.....|++||.++..++..
T Consensus 260 ---~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~ 336 (434)
T KOG1009|consen 260 ---RNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAV 336 (434)
T ss_pred ---eceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEE
Confidence 01122232111 12222233222222222111 111123344444556899999999888887
Q ss_pred EEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 290 LIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 290 ~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
... -|-..++.++|++||.+|+..+ ||...+-.+++.+
T Consensus 337 v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 337 VDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred Eee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 775 6889999999999999999999 9988877776554
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-25 Score=176.42 Aligned_cols=257 Identities=19% Similarity=0.284 Sum_probs=192.2
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC--------cceeeEecCcccceeEEEEecCCCEEEEecC
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR--------NLLLKTYGGHAHEVNDATAACDSSQIASGAS 75 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 75 (341)
.+..++..|.+.|+.++|.|....|++++.||.+++|+++. -+++.+|++|.++|.|++..++++.+++|+.
T Consensus 285 ~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 285 NIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred ceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence 34458889999999999999999999999999999999832 2577889999999999999999999999999
Q ss_pred CCcEEEEECCCC----------ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCc--------CeEEe
Q psy17863 76 DKSVILWEVTTG----------QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH--------PIQCC 137 (341)
Q Consensus 76 dg~i~iw~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--------~~~~~ 137 (341)
||+|+.|++... .....+.+|.+.|+.+++++....|++++.||+++.|+....... .....
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLS 444 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcce
Confidence 999999976422 234567899999999999999899999999999999998765530 00000
Q ss_pred ecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc---CCCCeEEE
Q psy17863 138 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY---GQEPIVDA 214 (341)
Q Consensus 138 ~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~i~~~ 214 (341)
........+-...+.....+++.+.+....+ .++...... ....+..+
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~-----------------------------~~~~s~~~~~~~~~~~in~v 495 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDL-----------------------------LIFESSASPGPRRYPQINKV 495 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhhe-----------------------------eeccccCCCcccccCccceE
Confidence 0000001111111222222222222111111 111111111 23457778
Q ss_pred EEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 215 CFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 215 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
...|.+.+.+++..|+.|+++|..+++++.....|...++++ ++.|+|.+|++++.|+.+++|.+....++....
T Consensus 496 Vs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtsl--ai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 496 VSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSL--AIDPNGPYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred EecCCCCeeEecccCCceecccccccccchheeeccceecce--eecCCCceEEeecCCceeehhhccchheeeccc
Confidence 889999999999999999999999999999999999999988 899999999999999999999987776665544
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-26 Score=186.77 Aligned_cols=200 Identities=18% Similarity=0.328 Sum_probs=175.7
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
.++..|.+|..+|.++.|+++..+|++|+.+|+|++||++..+.++++.+|...+.++.|+|-+.+.+.|+.|+.+++||
T Consensus 61 ~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD 140 (825)
T KOG0267|consen 61 NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWD 140 (825)
T ss_pred chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehh
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCc
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSS 163 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~ 163 (341)
++...+...+.+|...+..+.|+|+|+++++++.|..+++||...++
T Consensus 141 ~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk--------------------------------- 187 (825)
T KOG0267|consen 141 IRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK--------------------------------- 187 (825)
T ss_pred hhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc---------------------------------
Confidence 99889999999999999999999999999999999999999987654
Q ss_pred ceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEecccccee
Q psy17863 164 QISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELL 243 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 243 (341)
....+.. |...+..+.|+|..-+++.|+.|+++++||+++.+.+
T Consensus 188 ~~~ef~~------------------------------------~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I 231 (825)
T KOG0267|consen 188 LSKEFKS------------------------------------HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVI 231 (825)
T ss_pred ccccccc------------------------------------ccccccccccCchhhhhccCCCCceeeeeccceeEEe
Confidence 1111211 3455667778888888999999999999999999988
Q ss_pred eeecCcccceeEEEEEeCCCCCEEEEecCCC
Q psy17863 244 EEYKGHKSGDFRIECCLDSKDSQIFCGSSDG 274 (341)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 274 (341)
.........+.+. .|+|++..+++|....
T Consensus 232 ~s~~~~~~~v~~~--~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 232 SSGKPETDGVRSL--AFNPDGKIVLSGEQIS 260 (825)
T ss_pred eccCCccCCceee--eecCCceeeecCchhh
Confidence 8887777778777 8999999998886553
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-24 Score=171.72 Aligned_cols=266 Identities=17% Similarity=0.234 Sum_probs=205.0
Q ss_pred eeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCc--EEEEecCCCeEEEEE
Q psy17863 48 LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS--VVISGSQDNTVMMWD 125 (341)
Q Consensus 48 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd 125 (341)
-..+++|++.|.++...|.|.+|++|+.||+|+||.+.+|.+++++. ..+.|.|++|+|.+. .||++-.+ .+.+.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-ceEEeC
Confidence 34568999999999999999999999999999999999999999987 567899999999544 45554433 466666
Q ss_pred ecCCCCcCeEEeecCCCceEEEe----eccCeEEEEEccCCccee--eeEeeecCceEEEEEECCCCceEEEeCC----C
Q psy17863 126 VKSRSHHPIQCCLDSKDSQIFCG----SSDGKIYKWQLVDSSQIS--TLIHSVGKAVVNSLCSHPTRKHIMSACG----N 195 (341)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 195 (341)
..-+... ........++.+ ..++.+..|.-....... ....-.+...+..+.|+..|.++++... .
T Consensus 471 p~~G~~~----e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 471 PIFGDRL----EVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred ccccchh----hhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 4433110 011111222222 235677788765333222 1112224567999999999999998764 5
Q ss_pred ceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEE
Q psy17863 196 NVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIF 268 (341)
Q Consensus 196 ~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (341)
.+.|.++.... ..+.+.++.|+|...+|++++.. .|++||+...+.++++......+..+ +++|.|..|+
T Consensus 547 ~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~m--sihp~GDnli 623 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSM--SIHPNGDNLI 623 (733)
T ss_pred eEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeee--eecCCCCeEE
Confidence 78899887754 45678999999999999988764 79999999988888887777777777 8999999999
Q ss_pred EecCCCcEEEEeeeCC-CceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEc
Q psy17863 269 CGSSDGKIYKWQLVDS-SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 269 ~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~ 324 (341)
.|+.|+.+..+|+.-. ++.+++. .|...+++++|++.-.++++|+ ||++.|+.-
T Consensus 624 ~gs~d~k~~WfDldlsskPyk~lr--~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSSKPYKTLR--LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred EecCCCeeEEEEcccCcchhHHhh--hhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 9999999999998755 5666777 7999999999999999999999 899999863
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-25 Score=188.25 Aligned_cols=274 Identities=18% Similarity=0.330 Sum_probs=213.4
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEEC
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 84 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 84 (341)
.++.|.+|..+|.|..|...|.++++|+.|..++||..++..++...++|.+.|+.++.+.++.++++++.|..|++|.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC-C------------cCeEEeecCCCceEEEeecc
Q psy17863 85 TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-H------------HPIQCCLDSKDSQIFCGSSD 151 (341)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~------------~~~~~~~~~~~~~~~~~~~~ 151 (341)
.++.++..+.+|.+.|++++|+|-. +.+.||++++||.+-.. . .............+++++.+
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence 9999999999999999999999943 77889999999987211 0 01111222333455666666
Q ss_pred CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC-CCEEEEeecCC
Q psy17863 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD-CQCILTCSTDE 230 (341)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~ 230 (341)
+.-..|.+... ++....-.++. .+.+ ..+.+++-.+-
T Consensus 338 ~ea~n~e~~~l------------------~~~~~~lif~t------------------------~ssd~~~~~~~ar~~~ 375 (1113)
T KOG0644|consen 338 GEARNHEFEQL------------------AWRSNLLIFVT------------------------RSSDLSSIVVTARNDH 375 (1113)
T ss_pred cccccchhhHh------------------hhhccceEEEe------------------------ccccccccceeeeeee
Confidence 66555543221 11111111110 1111 13456666778
Q ss_pred eEEEEeccccceeeeecCcccceeEEEEEeCCCCCE-EEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCc
Q psy17863 231 CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 309 (341)
Q Consensus 231 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 309 (341)
.+.+|++.+|.+++.+.+|...++.+ .++|-+.. ..+++.||+..|||+-.|.+++.... + ...+..-.||+||.
T Consensus 376 ~~~vwnl~~g~l~H~l~ghsd~~yvL--d~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~-g-h~kl~d~kFSqdgt 451 (1113)
T KOG0644|consen 376 RLCVWNLYTGQLLHNLMGHSDEVYVL--DVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI-G-HGKLVDGKFSQDGT 451 (1113)
T ss_pred Eeeeeecccchhhhhhcccccceeee--eecCCCcHhhhhccCCCceEeeecccCCcceeeec-c-cceeeccccCCCCc
Confidence 89999999999999999999999988 67776554 45789999999999999988887772 3 56677789999999
Q ss_pred EEEEeC-CCcEEEEEccccc
Q psy17863 310 HIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 310 ~l~~~~-d~~i~vw~~~~~~ 328 (341)
.++... -|.++|.....+.
T Consensus 452 s~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 452 SIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred eEecCCCCCceEEeccCCCc
Confidence 999888 7889988766543
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-23 Score=170.07 Aligned_cols=177 Identities=16% Similarity=0.223 Sum_probs=136.0
Q ss_pred eeccCeEEEEEccCCcceee--eEeeecCceEEEEEECCC-CceEEEeC-CCceEEEEccccc--------------CCC
Q psy17863 148 GSSDGKIYKWQLVDSSQIST--LIHSVGKAVVNSLCSHPT-RKHIMSAC-GNNVKLWTAEEDY--------------GQE 209 (341)
Q Consensus 148 ~~~~g~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~i~~~~~~~~~--------------~~~ 209 (341)
.+..|.|.+|+++....+.. +....+...|..+.|.|- ...+++++ ++.|++|.+..+. |..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 45567888888877654432 223335567899999994 44555555 5999999987643 778
Q ss_pred CeEEEEEcc-CCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceE
Q psy17863 210 PIVDACFTR-DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 288 (341)
Q Consensus 210 ~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 288 (341)
.|+++.|+| -.+.|++++.|.+|++||+.+++....+.+|+..|..+ +|+|+|+.+++.+.||+|++|+.++++...
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~--AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv 756 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGI--AWSPDGRRIATVCKDGTLRVYEPRSREQPV 756 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEE--EECCCCcceeeeecCceEEEeCCCCCCCcc
Confidence 899999999 46778999999999999999999999999999999988 999999999999999999999988765432
Q ss_pred EEEeeeeccceEEEEEcCCCcEEEEeC-CC----cEEEEEccc
Q psy17863 289 TLIHSVGKAVVNSLCSHPTRKHIMSAC-GN----NVKLWTAEE 326 (341)
Q Consensus 289 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~----~i~vw~~~~ 326 (341)
.-....-...--.+.|.-||+++++.+ |. .|.+|+.++
T Consensus 757 ~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 757 YEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred ccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 222111223345577888999998887 64 588888665
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-24 Score=169.45 Aligned_cols=200 Identities=19% Similarity=0.373 Sum_probs=154.4
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEe-cCcccceeEEEEec--CCCEEEEecCCCcEEE
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTY-GGHAHEVNDATAAC--DSSQIASGASDKSVIL 81 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i 81 (341)
+.++|.||++-|+|++|+.+|.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|-| +++.+++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 45689999999999999999999999999999999999888888776 58999999999998 5678999999999999
Q ss_pred EECCCC----------ceeeeecccCccEEEEEEcCCC-cEEEEecCCCeEEEEEecCCCC------------------c
Q psy17863 82 WEVTTG----------QPVRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSH------------------H 132 (341)
Q Consensus 82 w~~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~------------------~ 132 (341)
+|+... +..+.+..|...|..++-.|++ ..+.++++||+++-+|++.... .
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 999742 3455667899999999999987 7899999999999999998431 1
Q ss_pred CeEEee--cCCCceEEEeeccCeEEEEEccCCcc------------------eeeeEee-e----c-----CceEEEEEE
Q psy17863 133 PIQCCL--DSKDSQIFCGSSDGKIYKWQLVDSSQ------------------ISTLIHS-V----G-----KAVVNSLCS 182 (341)
Q Consensus 133 ~~~~~~--~~~~~~~~~~~~~g~i~~~d~~~~~~------------------~~~~~~~-~----~-----~~~~~~~~~ 182 (341)
...++. .....++++|+.+--.++||.+...+ +..+... . + ...++-+.|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 112222 23345899999999999999432111 1111100 0 0 012567889
Q ss_pred CCCCceEEEeC-CCceEEEEccc
Q psy17863 183 HPTRKHIMSAC-GNNVKLWTAEE 204 (341)
Q Consensus 183 ~~~~~~~~~~~-~~~i~~~~~~~ 204 (341)
+|+|.-+++.- +..++++++..
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecC
Confidence 99987666554 57899998754
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=164.30 Aligned_cols=233 Identities=11% Similarity=0.155 Sum_probs=180.3
Q ss_pred ccceeEEEEecCCCEEEEecCCCcEEEEECCC--CceeeeecccCccEEEEEEcCCCc-EEEEecCCCeEEEEEecCCCC
Q psy17863 55 AHEVNDATAACDSSQIASGASDKSVILWEVTT--GQPVRRWREHASKVTCVKFNEDSS-VVISGSQDNTVMMWDVKSRSH 131 (341)
Q Consensus 55 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~ 131 (341)
.+.|+++.|+|....|++++.|+++++|.++. ...++.+.-...+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 46899999999999999999999999999864 345666666788999999999998 899999999999999988663
Q ss_pred cCeEE------------eecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEE
Q psy17863 132 HPIQC------------CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKL 199 (341)
Q Consensus 132 ~~~~~------------~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 199 (341)
..+.. ...+.++.++..+..|.|.+....+++.+..+.
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K------------------------------ 342 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK------------------------------ 342 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee------------------------------
Confidence 22221 112333345555555555555444444433332
Q ss_pred EEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEE
Q psy17863 200 WTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKW 279 (341)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 279 (341)
.++.+..++|+.+++.|++++.+|.|.+||++...+++.+.. .+.+....+|.++++.+||+|+..|.|.||
T Consensus 343 -------ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIY 414 (514)
T KOG2055|consen 343 -------IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIY 414 (514)
T ss_pred -------eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEe
Confidence 356788899999999999999999999999999988888873 445666667999999999999999999999
Q ss_pred eeeC------CCceEEEEeeeeccceEEEEEcCCCcEEEEeC---CCcEEEEEcccc
Q psy17863 280 QLVD------SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC---GNNVKLWTAEED 327 (341)
Q Consensus 280 d~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~vw~~~~~ 327 (341)
|..+ .+++..+. .-...|+++.|+||.++||.++ ...+++-.++..
T Consensus 415 d~~s~~~s~~PkPik~~d--NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~ 469 (514)
T KOG2055|consen 415 DGNSCFASTNPKPIKTVD--NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC 469 (514)
T ss_pred ccchhhccCCCCchhhhh--hhheeeeeeeeCcchhhhhhhhhccccceEEEeccce
Confidence 9654 34555555 4456899999999999999988 678888887754
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-23 Score=159.37 Aligned_cols=285 Identities=15% Similarity=0.202 Sum_probs=212.2
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC------cceeeEec-CcccceeEEEEecCCCEEEEecCCCc
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR------NLLLKTYG-GHAHEVNDATAACDSSQIASGASDKS 78 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~ 78 (341)
.+-+.+|.+-|+++.|+.++++|++|+.|..+++|+++. .+++.... .|...|.|++|...++.+++|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 445778999999999999999999999999999999753 34444433 35689999999999999999999999
Q ss_pred EEEEECCCCceeeeecc--cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEE
Q psy17863 79 VILWEVTTGQPVRRWRE--HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYK 156 (341)
Q Consensus 79 i~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 156 (341)
|...|+++.+.+..+.. ..+.|..+..+|-.+.|++.+.++.|.+||.+......-..
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~-------------------- 188 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLV-------------------- 188 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCcee--------------------
Confidence 99999999988877652 23589999999988899999999999999988755211111
Q ss_pred EEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc--------------CCCCeEEEEEccCC
Q psy17863 157 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY--------------GQEPIVDACFTRDC 220 (341)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~--------------~~~~i~~~~~~~~~ 220 (341)
...........+.|+|....|+... .+.+.+||.+... .......+.|+|+|
T Consensus 189 ------------~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G 256 (609)
T KOG4227|consen 189 ------------LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG 256 (609)
T ss_pred ------------eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC
Confidence 1111223467778888776655544 3789999987654 12234678899999
Q ss_pred CEEEEeecCCeEEEEeccccce-eeeecCcccc----eeEE-EEEeCCCCCEEEEecCCCcEEEEeeeCC----------
Q psy17863 221 QCILTCSTDECLRLFDKATGEL-LEEYKGHKSG----DFRI-ECCLDSKDSQIFCGSSDGKIYKWQLVDS---------- 284 (341)
Q Consensus 221 ~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~----~~~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------- 284 (341)
+.+.+--....-.+||+.+.++ +..+. |... +..+ .++|-. ...+++|+.+-.|++|.+...
T Consensus 257 ~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~-D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG 334 (609)
T KOG4227|consen 257 NQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFID-DYTVATGSDHWGIHIWKLPRANDSYGFTQIG 334 (609)
T ss_pred CeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeec-ceeeeccCcccceEEEecCCCccccCccccC
Confidence 9998887777788899876544 33332 2221 1111 234444 445999999999999987531
Q ss_pred -------------CceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 285 -------------SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 285 -------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
+.+..++ +|...++.+.|+|...+|++.+ ...+++|.--.
T Consensus 335 ~~~~~~~~~~~i~~~~~VLr--GHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 335 HDEEEMPSEIFIEKELTVLR--GHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred cchhhCchhheecceeEEEe--cccccccceeecCCcceEeccchhhheecccccc
Confidence 1233445 8999999999999999999999 99999997543
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-24 Score=152.64 Aligned_cols=202 Identities=17% Similarity=0.228 Sum_probs=142.7
Q ss_pred eeeeEEeeeCCcEEEEEEcc--CCCEEEEEeCCCeEEEEcCCCcc--eeeEecCcccceeEEEEecC--CCEEEEecCCC
Q psy17863 4 TCVQTIDCKQGAIRAVRFNV--DGSYCLTCGSDKKIKLWNPYRNL--LLKTYGGHAHEVNDATAACD--SSQIASGASDK 77 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~--~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg 77 (341)
+++.+|.||.++|..++|.. -|.+||+++.||.|.||.-++++ .......|...|++++|.|. |-.|++++.||
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG 126 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG 126 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCC
Confidence 67889999999999999976 79999999999999999977764 34556789999999999985 56799999999
Q ss_pred cEEEEECCCC---ceeeeecccCccEEEEEEcCC---C-----------cEEEEecCCCeEEEEEecCCCCcC-------
Q psy17863 78 SVILWEVTTG---QPVRRWREHASKVTCVKFNED---S-----------SVVISGSQDNTVMMWDVKSRSHHP------- 133 (341)
Q Consensus 78 ~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~~~~~d~~i~iwd~~~~~~~~------- 133 (341)
.|.|.+.++. ...+....|.-.|++++|.|- | +.|++|+.|..|+||+.....-..
T Consensus 127 ~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H 206 (299)
T KOG1332|consen 127 KVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH 206 (299)
T ss_pred cEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhc
Confidence 9999998764 223445679999999999984 4 457777777777777766532100
Q ss_pred ---eEEe-----ecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccc
Q psy17863 134 ---IQCC-----LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED 205 (341)
Q Consensus 134 ---~~~~-----~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 205 (341)
+.-. ...+...+++++.||++.+|..+........... .
T Consensus 207 ~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll---------------------------------~ 253 (299)
T KOG1332|consen 207 KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLL---------------------------------E 253 (299)
T ss_pred chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccc---------------------------------c
Confidence 0000 0112235555566666665554422111110000 0
Q ss_pred cCCCCeEEEEEccCCCEEEEeecCCeEEEEecc
Q psy17863 206 YGQEPIVDACFTRDCQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 206 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 238 (341)
.....+..+.||+.|+.|++++.|+.+.+|.-.
T Consensus 254 ~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 254 EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 024567888888889999998889999998643
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-23 Score=157.97 Aligned_cols=246 Identities=20% Similarity=0.309 Sum_probs=182.8
Q ss_pred EEeeeCCcEEEEEEccCC--CEEEEEeCCCeEEEEcCCC----------------cceeeEecCcccceeEEEEecC-CC
Q psy17863 8 TIDCKQGAIRAVRFNVDG--SYCLTCGSDKKIKLWNPYR----------------NLLLKTYGGHAHEVNDATAACD-SS 68 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~--~~l~t~~~dg~i~iw~~~~----------------~~~~~~~~~~~~~v~~~~~~~~-~~ 68 (341)
....|.+.++.+.-++-+ .+.|+-+..|.|+||++.. .+++.++.+|...=+.+.|+|- ..
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 345688888888887754 4666778899999999542 3567788899999999999993 23
Q ss_pred EEEEecCCCcEEEEECCCCce---eeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCce
Q psy17863 69 QIASGASDKSVILWEVTTGQP---VRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQ 144 (341)
Q Consensus 69 ~l~~~~~dg~i~iw~~~~~~~---~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 144 (341)
.|++|..-+.|++|...++.- ...+.+|...|-.++|+| ....|++|+.||+|+|||++.+...+..+.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~------- 298 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST------- 298 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-------
Confidence 588888888999999988754 245667999999999999 566899999999999999997652211110
Q ss_pred EEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEE
Q psy17863 145 IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCIL 224 (341)
Q Consensus 145 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~ 224 (341)
..|...|+.+.|+.+-.+|+
T Consensus 299 ------------------------------------------------------------kAh~sDVNVISWnr~~~lLa 318 (440)
T KOG0302|consen 299 ------------------------------------------------------------KAHNSDVNVISWNRREPLLA 318 (440)
T ss_pred ------------------------------------------------------------eccCCceeeEEccCCcceee
Confidence 11345677777887777899
Q ss_pred EeecCCeEEEEeccc---cceeeeecCcccceeEEEEEeCCCC-CEEEEecCCCcEEEEeeeCCCc--------------
Q psy17863 225 TCSTDECLRLFDKAT---GELLEEYKGHKSGDFRIECCLDSKD-SQIFCGSSDGKIYKWQLVDSSQ-------------- 286 (341)
Q Consensus 225 ~~~~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-------------- 286 (341)
+|+.||+++|||+++ ++++..|+-|..+|+++ .|+|.. ..|++++.|..|.+||+.--.-
T Consensus 319 sG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsi--eW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~d 396 (440)
T KOG0302|consen 319 SGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSI--EWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQD 396 (440)
T ss_pred ecCCCceEEEEEhhhccCCCcceeEEeccCCeeEE--EeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhc
Confidence 999999999999875 46789999999999999 566643 4688888999999999853211
Q ss_pred --eEEEEeeeeccceEEEEEcCCCc-EEEEeC-CCcEEEEE
Q psy17863 287 --ISTLIHSVGKAVVNSLCSHPTRK-HIMSAC-GNNVKLWT 323 (341)
Q Consensus 287 --~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~vw~ 323 (341)
.+.+-.......+..+.|++.-. +|++.+ || +.||.
T Consensus 397 lPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 397 LPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 11122112345788999998754 455555 76 55554
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-23 Score=160.04 Aligned_cols=254 Identities=13% Similarity=0.144 Sum_probs=182.7
Q ss_pred cCCCcceeeEecCcccceeEEEEecCC--CEEEEecCCCcEEEEECCCC----ceeeeecccCccEEEEEEcC-CCcEEE
Q psy17863 41 NPYRNLLLKTYGGHAHEVNDATAACDS--SQIASGASDKSVILWEVTTG----QPVRRWREHASKVTCVKFNE-DSSVVI 113 (341)
Q Consensus 41 ~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~ 113 (341)
|+.+-......+-+.++|++++|+|.. +++++|..-|+|-+||+.+. .-+..+..|..+|.++.|+| +...++
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence 344444555667789999999999954 57889999999999999532 23556678999999999999 667899
Q ss_pred EecCCCeEEEEEecCCCCcC----------eEEee-cCCCceEEEeeccCeEEEEEccCCccee-eeEeeecCceEEEEE
Q psy17863 114 SGSQDNTVMMWDVKSRSHHP----------IQCCL-DSKDSQIFCGSSDGKIYKWQLVDSSQIS-TLIHSVGKAVVNSLC 181 (341)
Q Consensus 114 ~~~~d~~i~iwd~~~~~~~~----------~~~~~-~~~~~~~~~~~~~g~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~ 181 (341)
+.+.||+|++-|++...... +..+. ...+..++.+..-|...+||.++.+... .+..
T Consensus 252 ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l----------- 320 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL----------- 320 (498)
T ss_pred eeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh-----------
Confidence 99999999999998754221 11222 2334466777777788999988765422 2221
Q ss_pred ECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC-CCEEEEeecCCeEEEEeccccceee----eecCcccceeEE
Q psy17863 182 SHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD-CQCILTCSTDECLRLFDKATGELLE----EYKGHKSGDFRI 256 (341)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~~~~~ 256 (341)
|...|..++++|. ..++++++.|++.+|||++.-.... ....|...|...
T Consensus 321 -------------------------h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sA 375 (498)
T KOG4328|consen 321 -------------------------HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSA 375 (498)
T ss_pred -------------------------hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeee
Confidence 2334566666663 3458899999999999988643322 234588888777
Q ss_pred EEEeCCCCCEEEEecCCCcEEEEee----eCCCceEEEEeeeec---cceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 257 ECCLDSKDSQIFCGSSDGKIYKWQL----VDSSQISTLIHSVGK---AVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 257 ~~~~~~~~~~l~~~~~dg~i~iwd~----~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
.|+|.+..|++.+.|..|+|||. ....+...+.+.... -......|.|+..++++|. -..|-|++-..+.
T Consensus 376 --yFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 376 --YFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred --EEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 89999989999999999999997 344555555521111 1344568999999999999 8889999987766
Q ss_pred CCcc
Q psy17863 329 GQAG 332 (341)
Q Consensus 329 ~~~~ 332 (341)
...+
T Consensus 454 ~v~e 457 (498)
T KOG4328|consen 454 MVCE 457 (498)
T ss_pred Eeee
Confidence 3333
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-23 Score=156.25 Aligned_cols=205 Identities=19% Similarity=0.361 Sum_probs=152.7
Q ss_pred CcccceeEEEEecCC--CEEEEecCCCcEEEEECCC----------------CceeeeecccCccEEEEEEcC-CCcEEE
Q psy17863 53 GHAHEVNDATAACDS--SQIASGASDKSVILWEVTT----------------GQPVRRWREHASKVTCVKFNE-DSSVVI 113 (341)
Q Consensus 53 ~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iw~~~~----------------~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 113 (341)
.|.+.++.+.-.+-+ .+.++-+..|.|.||++.. .+++.++.+|...=..++|+| ....|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 577778877777654 4555667789999999852 256778888998889999998 233477
Q ss_pred EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC
Q psy17863 114 SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 193 (341)
Q Consensus 114 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (341)
+|..-+.|++|...++. |.+.... +..
T Consensus 229 sGDc~~~I~lw~~~~g~--------------------------W~vd~~P----f~g----------------------- 255 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGS--------------------------WKVDQRP----FTG----------------------- 255 (440)
T ss_pred cCccccceEeeeeccCc--------------------------eeecCcc----ccc-----------------------
Confidence 77777788888876643 2111100 000
Q ss_pred CCceEEEEcccccCCCCeEEEEEccC-CCEEEEeecCCeEEEEeccccce--eeeecCcccceeEEEEEeCCCCCEEEEe
Q psy17863 194 GNNVKLWTAEEDYGQEPIVDACFTRD-CQCILTCSTDECLRLFDKATGEL--LEEYKGHKSGDFRIECCLDSKDSQIFCG 270 (341)
Q Consensus 194 ~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (341)
|...|..++|||. ...|++|+-||+|+|||++.+.. ....+.|.+.|..+ .|+....+||+|
T Consensus 256 -------------H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVI--SWnr~~~lLasG 320 (440)
T KOG0302|consen 256 -------------HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVI--SWNRREPLLASG 320 (440)
T ss_pred -------------cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeE--EccCCcceeeec
Confidence 3445666666664 35688999999999999998832 22337899999988 788888899999
Q ss_pred cCCCcEEEEeeeC---CCceEEEEeeeeccceEEEEEcCCC-cEEEEeC-CCcEEEEEcccc
Q psy17863 271 SSDGKIYKWQLVD---SSQISTLIHSVGKAVVNSLCSHPTR-KHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 271 ~~dg~i~iwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~vw~~~~~ 327 (341)
+.||+++|||++. ++++..+. .|..+|+++.|+|.. ..+++++ |.+|.+||+.-+
T Consensus 321 ~DdGt~~iwDLR~~~~~~pVA~fk--~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 321 GDDGTLSIWDLRQFKSGQPVATFK--YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred CCCceEEEEEhhhccCCCcceeEE--eccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 9999999999975 56788888 899999999999864 4555556 999999998743
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=161.12 Aligned_cols=253 Identities=14% Similarity=0.216 Sum_probs=187.7
Q ss_pred cEEEEEEccCCCEEEEE--eCCCeEEEEcCCCc--ceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCcee
Q psy17863 15 AIRAVRFNVDGSYCLTC--GSDKKIKLWNPYRN--LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV 90 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~--~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 90 (341)
.+.++.|+.... |+++ +.|..+++|.-... +....-+.....-.|++......++++|+..+.|+|||++...+.
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence 488999988664 4443 45888999973221 121111112223445555555689999999999999999987888
Q ss_pred eeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC---------cCeEEeecCC--CceEEEeeccCeEEEEEc
Q psy17863 91 RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH---------HPIQCCLDSK--DSQIFCGSSDGKIYKWQL 159 (341)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---------~~~~~~~~~~--~~~~~~~~~~g~i~~~d~ 159 (341)
+.++.|.+.|+++.++-...+||+++..|.|.+..+.++.. ..+..+..++ ...|.+++.+|.+.+||+
T Consensus 115 r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 115 RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 88999999999999999899999999999999999887642 1222333333 346788899999999999
Q ss_pred cCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC-CCEEEEeecCCeEEEEecc
Q psy17863 160 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD-CQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~ 238 (341)
....+....... |..|...++|+|. ..+|++.+.|..|.+||..
T Consensus 195 ~g~sp~~~~~~~-----------------------------------HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~ 239 (673)
T KOG4378|consen 195 QGMSPIFHASEA-----------------------------------HSAPCRGICFSPSNEALLVSVGYDKKINIYDIR 239 (673)
T ss_pred cCCCcccchhhh-----------------------------------ccCCcCcceecCCccceEEEecccceEEEeecc
Confidence 877665544322 3455666666663 4567889999999999998
Q ss_pred ccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCC-ceEEEEeeeeccceEEEEEcCCC
Q psy17863 239 TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS-QISTLIHSVGKAVVNSLCSHPTR 308 (341)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 308 (341)
..+....+. ...+...+ +|.++|.+|++|...|.|..||++..+ ++..+. .|...|++++|-|.-
T Consensus 240 s~~s~~~l~-y~~Plstv--af~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~s--ah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 240 SQASTDRLT-YSHPLSTV--AFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRS--AHDASVTRVAFQPSP 305 (673)
T ss_pred cccccceee-ecCCccee--eecCCceEEEeecCCceEEEEecccCCCCceEee--ecccceeEEEeeecc
Confidence 777666654 33445556 899999999999999999999998754 555565 899999999998764
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-21 Score=162.90 Aligned_cols=289 Identities=17% Similarity=0.228 Sum_probs=207.3
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC----cceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCC
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR----NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 87 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 87 (341)
|...++|.++||+++++|+|..||.|.+|.--. ......+..|...|.+++|+++|.+|++|+..|.+.+|.++++
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence 667799999999999999999999999996322 2234567789999999999999999999999999999999999
Q ss_pred ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------------------cCeEEeecCCCceEEE
Q psy17863 88 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------------------HPIQCCLDSKDSQIFC 147 (341)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------------------~~~~~~~~~~~~~~~~ 147 (341)
+ .+-++.-.++|..+.++||+.+.+....|+.|.+....+... -.......+..+.++.
T Consensus 284 ~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl 362 (792)
T KOG1963|consen 284 K-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL 362 (792)
T ss_pred C-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceee
Confidence 8 555677889999999999999999999999999987643210 1112233444667788
Q ss_pred eeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEee
Q psy17863 148 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCS 227 (341)
Q Consensus 148 ~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 227 (341)
.+..|.|.+||+-+.+.+..+...... .+++.. .....++.++.+..|.++++.-
T Consensus 363 n~~~g~vQ~ydl~td~~i~~~~v~~~n-------~~~~~~------------------n~~v~itav~~~~~gs~maT~E 417 (792)
T KOG1963|consen 363 NGHPGHVQFYDLYTDSTIYKLQVCDEN-------YSDGDV------------------NIQVGITAVARSRFGSWMATLE 417 (792)
T ss_pred cCCCceEEEEeccccceeeeEEEEeec-------ccCCcc------------------eeEEeeeeehhhccceEEEEee
Confidence 888999999999887777655422111 111110 1233466666666677776643
Q ss_pred --------cC--CeEEEEeccccc----eeee-ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCC------c
Q psy17863 228 --------TD--ECLRLFDKATGE----LLEE-YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS------Q 286 (341)
Q Consensus 228 --------~d--~~i~i~d~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~ 286 (341)
.| -.+++|-..... +..+ ...|........+...+.....++++.||.+++|-+.+.+ .
T Consensus 418 ~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s 497 (792)
T KOG1963|consen 418 ARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSS 497 (792)
T ss_pred eeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCcc
Confidence 22 347788654332 2222 2456655554433333333389999999999999984322 2
Q ss_pred eEEE--EeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEccc
Q psy17863 287 ISTL--IHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 287 ~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
.... ...-|..++++++|+.||..|+.+.|+.|.+||..+
T Consensus 498 ~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 498 NWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred ceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 1121 222468899999999999888888899999999987
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-22 Score=149.37 Aligned_cols=242 Identities=14% Similarity=0.175 Sum_probs=170.2
Q ss_pred eeEEEEecCCCEEEEecCCCcEEEEECCCCceee------------eec-ccCccEEEEEEcCCCcEEEEecCCCeEEEE
Q psy17863 58 VNDATAACDSSQIASGASDKSVILWEVTTGQPVR------------RWR-EHASKVTCVKFNEDSSVVISGSQDNTVMMW 124 (341)
Q Consensus 58 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~------------~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 124 (341)
...+.|+|||..|++-+.|..+++|++...-.-. .++ .....|...+|.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs----------------- 114 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYS----------------- 114 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeee-----------------
Confidence 4567899999999999999999999985321100 000 0122333333321
Q ss_pred EecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeec---CceEEEEEECCCCceEEEeCCCceEEEE
Q psy17863 125 DVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG---KAVVNSLCSHPTRKHIMSACGNNVKLWT 201 (341)
Q Consensus 125 d~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 201 (341)
......+...++++.+.+.-|++||.-+++....+..-.+ -....+++|+|+|..|+++....|++||
T Consensus 115 ---------~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFd 185 (406)
T KOG2919|consen 115 ---------RMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFD 185 (406)
T ss_pred ---------ccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEee
Confidence 0011122233444445555555555555554443332222 2345789999999999999999999999
Q ss_pred ccccc---------------CCCCeEEEEEccC-CCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCC
Q psy17863 202 AEEDY---------------GQEPIVDACFTRD-CQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS 265 (341)
Q Consensus 202 ~~~~~---------------~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (341)
+.... ..+-|.+++|+|- .+.+++|+....+-||.-..+.++..+-+|.+.|+.+ .|.++|+
T Consensus 186 t~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL--~~~edGn 263 (406)
T KOG2919|consen 186 TSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHL--QWCEDGN 263 (406)
T ss_pred ccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeE--EeccCcC
Confidence 95432 2456889999995 5589999999999999988899999999999999998 7889999
Q ss_pred EEEEecC-CCcEEEEeeeCC-CceEEEEeeeecc-ce--EEEEEcCCCcEEEEeC-CCcEEEEEcccccC
Q psy17863 266 QIFCGSS-DGKIYKWQLVDS-SQISTLIHSVGKA-VV--NSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 266 ~l~~~~~-dg~i~iwd~~~~-~~~~~~~~~~~~~-~v--~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~ 329 (341)
.|++|+. |-.|..||++.. .++..+. .|.. .= .-....|++++|++|+ ||.|++||+.+...
T Consensus 264 ~lfsGaRk~dkIl~WDiR~~~~pv~~L~--rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 264 KLFSGARKDDKILCWDIRYSRDPVYALE--RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred eecccccCCCeEEEEeehhccchhhhhh--hhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 9999974 778999999864 4556665 3433 22 2245578999999999 99999999987443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-20 Score=152.93 Aligned_cols=266 Identities=12% Similarity=0.222 Sum_probs=177.6
Q ss_pred EEEEeCCCeEEEEcCCC-cc--eeeEecCcccceeEEEEecCCCEEEEec-CCCcEEEEECCC-Cce--eeeecccCccE
Q psy17863 28 CLTCGSDKKIKLWNPYR-NL--LLKTYGGHAHEVNDATAACDSSQIASGA-SDKSVILWEVTT-GQP--VRRWREHASKV 100 (341)
Q Consensus 28 l~t~~~dg~i~iw~~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~-~~~--~~~~~~~~~~v 100 (341)
+++...++.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|+++. ++. +.... .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 33446689999999964 33 444554 345677899999999987764 478899999973 332 22222 23456
Q ss_pred EEEEEcCCCcEEEEecC-CCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEE
Q psy17863 101 TCVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNS 179 (341)
Q Consensus 101 ~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 179 (341)
..++++|+++++++++. ++.|.+|++++..... +....+ .+......
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~-----------------------------~~~~~~---~~~~~~~~ 130 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPV-----------------------------APIQII---EGLEGCHS 130 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC-----------------------------Cceeec---cCCCcccE
Confidence 78999999998888764 7788888886321000 000000 01123567
Q ss_pred EEECCCCceEEEeC--CCceEEEEccccc-------------CCCCeEEEEEccCCCEEEEeec-CCeEEEEeccc--c-
Q psy17863 180 LCSHPTRKHIMSAC--GNNVKLWTAEEDY-------------GQEPIVDACFTRDCQCILTCST-DECLRLFDKAT--G- 240 (341)
Q Consensus 180 ~~~~~~~~~~~~~~--~~~i~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~--~- 240 (341)
++++|++++++++. ++.|.+|++.... .......++|+|+|++++++.. ++.|.+|++.. +
T Consensus 131 ~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~ 210 (330)
T PRK11028 131 ANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE 210 (330)
T ss_pred eEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC
Confidence 88999999887665 4889999997532 1223467899999999988876 89999999873 2
Q ss_pred -ceeeeecCcc----cceeEEEEEeCCCCCEEEEec-CCCcEEEEeeeCCCceEEEE-eeeeccceEEEEEcCCCcEEEE
Q psy17863 241 -ELLEEYKGHK----SGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLVDSSQISTLI-HSVGKAVVNSLCSHPTRKHIMS 313 (341)
Q Consensus 241 -~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~ 313 (341)
+.+..+.... .+.....+.++|++++++++. .++.|.+|++.......++. ...-......+.++|+|++|++
T Consensus 211 ~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 211 IECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIA 290 (330)
T ss_pred EEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEE
Confidence 2233332211 112233457899999999885 47899999997644322222 1111234568899999999998
Q ss_pred eC--CCcEEEEEcccc
Q psy17863 314 AC--GNNVKLWTAEED 327 (341)
Q Consensus 314 ~~--d~~i~vw~~~~~ 327 (341)
+. +++|.+|+++..
T Consensus 291 a~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 291 AGQKSHHISVYEIDGE 306 (330)
T ss_pred EEccCCcEEEEEEcCC
Confidence 77 889999998643
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=154.21 Aligned_cols=179 Identities=18% Similarity=0.236 Sum_probs=137.5
Q ss_pred EEeeeCCcEEEEEEcc-CCCEEEEEeCCCeEEEEcCCCc-------ceeeEecCcccceeEEEEecC-CCEEEEecCCCc
Q psy17863 8 TIDCKQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRN-------LLLKTYGGHAHEVNDATAACD-SSQIASGASDKS 78 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 78 (341)
.+.||+++|..++|+| +...+|+|+.|.+|.||.+..+ +++..+.+|...|--++|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4678999999999999 5678999999999999997654 456778899999999999995 567899999999
Q ss_pred EEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC----------cCeEEeecCCCceEEEe
Q psy17863 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH----------HPIQCCLDSKDSQIFCG 148 (341)
Q Consensus 79 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~~~~~~~~~ 148 (341)
|.+||+.+|+.+.++. |.+.|.++.|+.||.+|++.+.|..|++||.++++. .+....+..++..+-+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999988888 999999999999999999999999999999988652 22333344444433333
Q ss_pred e---ccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCc
Q psy17863 149 S---SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 187 (341)
Q Consensus 149 ~---~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (341)
. ++.++.+||..+.+....+........|.---+.++.+
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ 276 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTS 276 (472)
T ss_pred cccccccceeccCcccccCcceeEEeccCCceEEeeecCCCC
Confidence 2 46788999987765544443333333333333344433
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=149.73 Aligned_cols=208 Identities=21% Similarity=0.312 Sum_probs=166.6
Q ss_pred EecCcccceeEEEEec-CCCEEEEecCCCcEEEEECCCC-------ceeeeecccCccEEEEEEcC-CCcEEEEecCCCe
Q psy17863 50 TYGGHAHEVNDATAAC-DSSQIASGASDKSVILWEVTTG-------QPVRRWREHASKVTCVKFNE-DSSVVISGSQDNT 120 (341)
Q Consensus 50 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~ 120 (341)
.+.+|.++|..++|+| +...||+|++|.+|.||++..+ +++..+.+|...|--++|+| -.+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3568999999999999 6678999999999999998764 45677889999999999999 5668899999999
Q ss_pred EEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEE
Q psy17863 121 VMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 200 (341)
Q Consensus 121 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 200 (341)
|.+||+.+++. +..+
T Consensus 156 v~iWnv~tgea---------------------------------li~l-------------------------------- 170 (472)
T KOG0303|consen 156 VSIWNVGTGEA---------------------------------LITL-------------------------------- 170 (472)
T ss_pred EEEEeccCCce---------------------------------eeec--------------------------------
Confidence 99999887651 1111
Q ss_pred EcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEec---CCCcEE
Q psy17863 201 TAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGS---SDGKIY 277 (341)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~ 277 (341)
.|...|.++.|+.||.++++.+.|..|+|||.++++.+.+-.+|.+.-. .+..|-.++..+-+|. ++..+-
T Consensus 171 -----~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~-~Raifl~~g~i~tTGfsr~seRq~a 244 (472)
T KOG0303|consen 171 -----DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKP-ARAIFLASGKIFTTGFSRMSERQIA 244 (472)
T ss_pred -----CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCc-ceeEEeccCceeeecccccccccee
Confidence 1356788899999999999999999999999999999999888876432 3345777887555553 578899
Q ss_pred EEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC--CCcEEEEEccccc
Q psy17863 278 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY 328 (341)
Q Consensus 278 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~~~ 328 (341)
+||..+.+....+........|.---|.||..++..++ |+.||-|.+..+.
T Consensus 245 Lwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 245 LWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 99987766554444334566777788899999888887 9999999998765
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-19 Score=152.79 Aligned_cols=314 Identities=27% Similarity=0.481 Sum_probs=234.5
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc-eeeEecCccc-ceeEEEE-ecCCC-EEEEecC-CCcEEEE
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL-LLKTYGGHAH-EVNDATA-ACDSS-QIASGAS-DKSVILW 82 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~-~l~~~~~-dg~i~iw 82 (341)
.+..|...+.++.+.+.+..++.++.|+.+.+|+...+. ....+..+.. .+..+.+ .+++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 467899999999999999999999999999999988876 6666766443 6777777 77777 5555444 9999999
Q ss_pred ECCC-CceeeeecccCccEEEEEEcCCCcEEEEecC-CCeEEEEEecCCC--------CcCeEEeecCCCc--eEEEeec
Q psy17863 83 EVTT-GQPVRRWREHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSRS--------HHPIQCCLDSKDS--QIFCGSS 150 (341)
Q Consensus 83 ~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~--------~~~~~~~~~~~~~--~~~~~~~ 150 (341)
+... ......+..|...|..++|+|++..+++++. |+.+++|++.... ...+......+.+ .+++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 219 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence 9988 7888888999999999999999998888886 9999999988632 2234444444444 3444489
Q ss_pred cCeEEEEEccCCccee-eeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc--------CCCCeEEEEEccCC
Q psy17863 151 DGKIYKWQLVDSSQIS-TLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY--------GQEPIVDACFTRDC 220 (341)
Q Consensus 151 ~g~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~--------~~~~i~~~~~~~~~ 220 (341)
|+.+.+||...+.... .+..+.... +. .++|++..++.+. ++.+++|+..... +...+.++.|.|++
T Consensus 220 d~~i~~wd~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 296 (466)
T COG2319 220 DGTIRLWDLSTGKLLRSTLSGHSDSV-VS--SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG 296 (466)
T ss_pred CCcEEEEECCCCcEEeeecCCCCcce-eE--eECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCC
Confidence 9999999888655555 233332222 22 8999986666444 6899999987544 47899999999988
Q ss_pred CEEEEeecCCeEEEEeccccceeeeec--CcccceeEEEEEeCCCCCEEEEe-cCCCcEEEEeeeCCCceEEEEeeeecc
Q psy17863 221 QCILTCSTDECLRLFDKATGELLEEYK--GHKSGDFRIECCLDSKDSQIFCG-SSDGKIYKWQLVDSSQISTLIHSVGKA 297 (341)
Q Consensus 221 ~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (341)
..+++++.|+.+.+|+..+........ .|...+..+.+ .+++..++.+ ..|+.+.+|+........... ...
T Consensus 297 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~ 371 (466)
T COG2319 297 KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF--SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE---GHS 371 (466)
T ss_pred CEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE--CCCCCEEEEeecCCCcEEeeecCCCceeEEec---CCc
Confidence 888889999889999988877666665 77776777744 3443455555 688999999988877222222 222
Q ss_pred ceEEEEEcCCCcEEEE-eC-CCcEEEEEcccccCC
Q psy17863 298 VVNSLCSHPTRKHIMS-AC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 298 ~v~~~~~~~~~~~l~~-~~-d~~i~vw~~~~~~~~ 330 (341)
.+..+.+++ ...... +. ++.+.+|+.......
T Consensus 372 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (466)
T COG2319 372 NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLL 405 (466)
T ss_pred eEEEEEECC-CCCEEEEecCCCceEEEecccCeee
Confidence 388999998 544444 45 999999999876544
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=154.45 Aligned_cols=258 Identities=15% Similarity=0.130 Sum_probs=183.7
Q ss_pred CCeEEEEcCCCcceeeEecCcc--cceeEEEEecCCCE-EEEecCCCcEEEEECCCC--ceeeeecccCccEEEEEEcCC
Q psy17863 34 DKKIKLWNPYRNLLLKTYGGHA--HEVNDATAACDSSQ-IASGASDKSVILWEVTTG--QPVRRWREHASKVTCVKFNED 108 (341)
Q Consensus 34 dg~i~iw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~ 108 (341)
...+++||....+....+..|+ ..+.++.|.....+ +++.+.|..+++|.-... +....-+.....-.|++....
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~ 90 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQ 90 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhc
Confidence 3479999988766555554333 34889999876542 234456888999974322 121111222234456666566
Q ss_pred CcEEEEecCCCeEEEEEecCCC---------CcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEE
Q psy17863 109 SSVVISGSQDNTVMMWDVKSRS---------HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNS 179 (341)
Q Consensus 109 ~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 179 (341)
..++++|+..+.|+|||++... ...........+.++++++..|.|.+..+.++.....+....+ ..+.
T Consensus 91 S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sg-qsvR- 168 (673)
T KOG4378|consen 91 SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSG-QSVR- 168 (673)
T ss_pred ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCC-CeEE-
Confidence 6899999999999999987521 1223334556778999999999999999988776666654322 2233
Q ss_pred EEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCE-EEEeecCCeEEEEeccccceeeee-cCcccceeEEE
Q psy17863 180 LCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQC-ILTCSTDECLRLFDKATGELLEEY-KGHKSGDFRIE 257 (341)
Q Consensus 180 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~ 257 (341)
-+.++|..++ |.+++.+|.|.+||.....+...+ ..|..+...+
T Consensus 169 ---------------------------------ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gi- 214 (673)
T KOG4378|consen 169 ---------------------------------LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGI- 214 (673)
T ss_pred ---------------------------------EeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcc-
Confidence 3445554333 567889999999999876665544 6788887777
Q ss_pred EEeCCCC-CEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCc
Q psy17863 258 CCLDSKD-SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 258 ~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~ 331 (341)
||+|.. .+|++.+.|..|.+||+...+....+. ...+.+.++|+++|.+|++|. .|.|..||++....+-
T Consensus 215 -cfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~---y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 215 -CFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT---YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred -eecCCccceEEEecccceEEEeecccccccceee---ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCc
Confidence 777754 467889999999999999877777775 567899999999999999999 9999999998765443
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-19 Score=149.96 Aligned_cols=314 Identities=28% Similarity=0.519 Sum_probs=235.7
Q ss_pred eeeEEeeeCC-cEEEEEE-ccCCC-EEEEEeC-CCeEEEEcCCC-cceeeEecCcccceeEEEEecCCCEEEEecC-CCc
Q psy17863 5 CVQTIDCKQG-AIRAVRF-NVDGS-YCLTCGS-DKKIKLWNPYR-NLLLKTYGGHAHEVNDATAACDSSQIASGAS-DKS 78 (341)
Q Consensus 5 ~~~~l~~h~~-~v~~~~~-~~~~~-~l~t~~~-dg~i~iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~ 78 (341)
....+.++.. .+..+.+ ++++. +++..+. |+.+.+|+... ......+..|...|..++|+|++..+++++. |+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 179 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179 (466)
T ss_pred eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCc
Confidence 4455665443 7888888 88887 5555445 99999999987 7888888999999999999999998888886 999
Q ss_pred EEEEECCCCceeeeecccCccEEEEEEcCCCc-EEEEecCCCeEEEEEecCCCCc---------CeEEeecCCCceEEEe
Q psy17863 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSS-VVISGSQDNTVMMWDVKSRSHH---------PIQCCLDSKDSQIFCG 148 (341)
Q Consensus 79 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~---------~~~~~~~~~~~~~~~~ 148 (341)
+++|+...++.+..+..|...+.+++|+|++. .+++++.|+.+.+||...+... .......+.+..++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (466)
T COG2319 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASG 259 (466)
T ss_pred eEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEe
Confidence 99999999888999999999999999999987 5555599999999987643211 1111233334588889
Q ss_pred eccCeEEEEEccCCcc-eeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc---------CCCCeEEEEEc
Q psy17863 149 SSDGKIYKWQLVDSSQ-ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY---------GQEPIVDACFT 217 (341)
Q Consensus 149 ~~~g~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~---------~~~~i~~~~~~ 217 (341)
+.++.+++|+...... .... ..+...+.++.+.|++..++++. ++.+.+|+..... +...+..+.+.
T Consensus 260 ~~d~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (466)
T COG2319 260 SSDGTIRLWDLRSSSSLLRTL--SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFS 337 (466)
T ss_pred cCCCcEEEeeecCCCcEEEEE--ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEEC
Confidence 9999999999987776 3333 33467799999999777777644 4668999776432 44458888884
Q ss_pred cCCCEEEEe-ecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEE-ecCCCcEEEEeeeCCCceEEEEeeee
Q psy17863 218 RDCQCILTC-STDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFC-GSSDGKIYKWQLVDSSQISTLIHSVG 295 (341)
Q Consensus 218 ~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~ 295 (341)
+++..++.+ ..|+.+.+|+............... +..+ .+.+ ...+.. +..++.+.+|+........... .+
T Consensus 338 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 411 (466)
T COG2319 338 PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSV--SFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLD--GH 411 (466)
T ss_pred CCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEE--EECC-CCCEEEEecCCCceEEEecccCeeeeecc--CC
Confidence 332455555 6788999999887763333332222 4444 5555 334444 7899999999998887776665 22
Q ss_pred ccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 296 KAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 296 ~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
...+....+++++..+++++ ++.+++|+...
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 412 TSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 27899999999999999988 99999999887
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=160.44 Aligned_cols=291 Identities=20% Similarity=0.338 Sum_probs=221.1
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEe-cCcccceeEEEEec--CCCEEEEecCCCcEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTY-GGHAHEVNDATAAC--DSSQIASGASDKSVI 80 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 80 (341)
.+...|..|.+-|+.+.|+..|..|++|+.|..|.+||+..+.....+ .+|...|....|-| +...+++++.||.++
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 455678999999999999999999999999999999999988877666 57999999889988 456799999999999
Q ss_pred EEECCCCce---eeeecccCccEEEEEEcCC-CcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEE
Q psy17863 81 LWEVTTGQP---VRRWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYK 156 (341)
Q Consensus 81 iw~~~~~~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 156 (341)
+=.+..... ...+..|.++|..++.-|+ ...|.+++.|+.+.-+|++.........+... +..
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~----------~~~--- 279 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREA----------DEK--- 279 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeecc----------CCc---
Confidence 887654322 3345569999999999984 45688999999999999887653222111100 000
Q ss_pred EEccCCcceeeeEeeecCceEEEEEECCCCc-eEEEeC-CCceEEEEccccc-------------------CCCCeEEEE
Q psy17863 157 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRK-HIMSAC-GNNVKLWTAEEDY-------------------GQEPIVDAC 215 (341)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~i~~~~~~~~~-------------------~~~~i~~~~ 215 (341)
..-....++..|... .+++++ +.-+++||...-. ....|++++
T Consensus 280 ----------------~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~ 343 (559)
T KOG1334|consen 280 ----------------ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLV 343 (559)
T ss_pred ----------------cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEE
Confidence 012356777777765 333333 4667888765421 345799999
Q ss_pred EccCCCEEEEeecCCeEEEEeccc--c----------ceeee-ecCccccee--EEEEEeCCCCCEEEEecCCCcEEEEe
Q psy17863 216 FTRDCQCILTCSTDECLRLFDKAT--G----------ELLEE-YKGHKSGDF--RIECCLDSKDSQIFCGSSDGKIYKWQ 280 (341)
Q Consensus 216 ~~~~~~~l~~~~~d~~i~i~d~~~--~----------~~~~~-~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (341)
++.++.-+++.-.|-.|+++.... | ..++. +++|.+.-+ .+. -|-|...|+++|+.-|.|.||+
T Consensus 344 Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVN-FfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 344 YSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVN-FFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred ecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceee-eccCccceEEecCccceEEEEe
Confidence 998887788888888899996432 2 22333 788876544 332 2678889999999999999999
Q ss_pred eeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 281 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
-.+++.+..+. +....|+||.-+|--..||+++ |.-|+||...+
T Consensus 423 K~t~eii~~Me--gDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 423 KKTGEIIRFME--GDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred cchhHHHHHhh--cccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 99999998888 5566999999999999999999 99999999744
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-21 Score=145.31 Aligned_cols=271 Identities=15% Similarity=0.274 Sum_probs=189.9
Q ss_pred CEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEec--CCCEEEEecCCCcEEEEECCCCceeee--ecccC-ccE
Q psy17863 26 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC--DSSQIASGASDKSVILWEVTTGQPVRR--WREHA-SKV 100 (341)
Q Consensus 26 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~-~~v 100 (341)
..+|++.+.|.|++||..+++.+..++++...++.+.|.. ....+.+++.||+|++||++....... +..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4688999999999999999999999999999999999987 467799999999999999988755443 33444 456
Q ss_pred EEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEE
Q psy17863 101 TCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 180 (341)
Q Consensus 101 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 180 (341)
.+++.+-+++.+++|..- ...+-.+.+||.+..++........+...|+++
T Consensus 121 ~~ld~nck~~ii~~GtE~-----------------------------~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~l 171 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTEL-----------------------------TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQL 171 (376)
T ss_pred eEeeccCcCCeEEecccc-----------------------------ccCceEEEEEEeccccchhhhhhhhccCcceeE
Confidence 667666566667666421 012334566666665553222333466779999
Q ss_pred EECCCCceE-EEeC-CCceEEEEccccc----------CCCCeEEEEEccCC-CEEEEeecCCeEEEEeccccceeeeec
Q psy17863 181 CSHPTRKHI-MSAC-GNNVKLWTAEEDY----------GQEPIVDACFTRDC-QCILTCSTDECLRLFDKATGELLEEYK 247 (341)
Q Consensus 181 ~~~~~~~~~-~~~~-~~~i~~~~~~~~~----------~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~ 247 (341)
.|+|...-+ ++++ +|-+.+||+..+. +...|.++.|..++ +.+.+-+......+|+++.+.....+.
T Consensus 172 rFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 172 RFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred EecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 999987544 4444 6999999998765 56679999999887 458888888999999999887554443
Q ss_pred Ccc----------cceeEEEEEeCCCCCEEEEecC-CCcEEEEeee---CC---CceEEEEeeeeccceEEEEEcCCCcE
Q psy17863 248 GHK----------SGDFRIECCLDSKDSQIFCGSS-DGKIYKWQLV---DS---SQISTLIHSVGKAVVNSLCSHPTRKH 310 (341)
Q Consensus 248 ~~~----------~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~---~~---~~~~~~~~~~~~~~v~~~~~~~~~~~ 310 (341)
... .--+.+......+....+.++. -|...++-+. ++ +.+..+. .+|...|+++.|...+.+
T Consensus 252 ~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~-g~~~eiVR~i~~~~~~~~ 330 (376)
T KOG1188|consen 252 NPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQ-GGHEEIVRDILFDVKNDV 330 (376)
T ss_pred CccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCcccccc-CCcHHHHHHHhhhcccce
Confidence 221 1112222122223344444443 5666665544 22 2333333 257889999999999999
Q ss_pred EEEeC-CCcEEEEEccc
Q psy17863 311 IMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 311 l~~~~-d~~i~vw~~~~ 326 (341)
+.+|+ ||.+.+|..+.
T Consensus 331 l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 331 LYTGGEDGLLQAWKVED 347 (376)
T ss_pred eeccCCCceEEEEecCC
Confidence 99999 99999999643
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=151.80 Aligned_cols=201 Identities=17% Similarity=0.197 Sum_probs=149.7
Q ss_pred EeeeCCcEEEEEEccC-CCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEec-CCCEEEEecCCCcEEEEECCC
Q psy17863 9 IDCKQGAIRAVRFNVD-GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC-DSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 9 l~~h~~~v~~~~~~~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~ 86 (341)
-.+|++.|.+++|+.. .+.||+||.|.+|++||+.++++..++..|...|.++.|+| ....|++|+.|++|.+.|.+.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 3479999999999886 46899999999999999999999999999999999999999 567899999999999999985
Q ss_pred CceeeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCC---------cCeEE--eecCCCceEEEeeccCeE
Q psy17863 87 GQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSH---------HPIQC--CLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~---------~~~~~--~~~~~~~~~~~~~~~g~i 154 (341)
.......-...+.|-.++|.| ....++++..||+|+-+|++.... .++.. ......+.+++++.++.+
T Consensus 319 ~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~V 398 (463)
T KOG0270|consen 319 PSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVV 398 (463)
T ss_pred ccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceE
Confidence 332222222467899999998 455778888999999999998742 12222 223344588999999999
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCC-CEEEEeecCCeEE
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDC-QCILTCSTDECLR 233 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~ 233 (341)
++|++..............-... .|+++.|+- -.++.|+..+.++
T Consensus 399 klw~~~~~~~~~v~~~~~~~~rl----------------------------------~c~~~~~~~a~~la~GG~k~~~~ 444 (463)
T KOG0270|consen 399 KLWKFDVDSPKSVKEHSFKLGRL----------------------------------HCFALDPDVAFTLAFGGEKAVLR 444 (463)
T ss_pred EEEeecCCCCcccccccccccce----------------------------------eecccCCCcceEEEecCccceEE
Confidence 99998876554333322222223 333444432 2367778888899
Q ss_pred EEecccccee
Q psy17863 234 LFDKATGELL 243 (341)
Q Consensus 234 i~d~~~~~~~ 243 (341)
+||+.+...+
T Consensus 445 vwd~~~~~~V 454 (463)
T KOG0270|consen 445 VWDIFTNSPV 454 (463)
T ss_pred EeecccChhH
Confidence 9998776554
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-20 Score=152.40 Aligned_cols=228 Identities=14% Similarity=0.182 Sum_probs=169.3
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
..++++|++|.+.|.|++|+.||+.+|+|+.|..|.+|+..-.. +-.+ .|...|.|+.|+|-...|++++-. ..-+|
T Consensus 43 G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglW 119 (1081)
T KOG1538|consen 43 GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLW 119 (1081)
T ss_pred cccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeee-ccCCeeeEeecCchHHHhhhcchh-hcccc
Confidence 45788999999999999999999999999999999999854322 2334 499999999999999999998764 47789
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC----------CcCeEEeecCC------CceEE
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS----------HHPIQCCLDSK------DSQIF 146 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----------~~~~~~~~~~~------~~~~~ 146 (341)
..+... +...+ ....+.+.+|..||++++.|-.+|+|.+-+-...+ ..++....+.+ .+.++
T Consensus 120 S~~qK~-V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 120 SPEQKS-VSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred Chhhhh-HHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence 865433 22222 35678899999999999999999999987644322 23333333222 23667
Q ss_pred EeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccc------cCCCCeEEEEEccC
Q psy17863 147 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED------YGQEPIVDACFTRD 219 (341)
Q Consensus 147 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~------~~~~~i~~~~~~~~ 219 (341)
+.....++.++.+.....-.... -.....++...++|.+++.++ ++.+.+|..+.- .....|..++..|+
T Consensus 198 V~DW~qTLSFy~LsG~~Igk~r~---L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PN 274 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLSGKQIGKDRA---LNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPN 274 (1081)
T ss_pred EEeccceeEEEEecceeeccccc---CCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccC
Confidence 77777777777765422111111 122356888999999887776 588888876542 25678999999999
Q ss_pred CCEEEEeecCCeEEEEecc
Q psy17863 220 CQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 220 ~~~l~~~~~d~~i~i~d~~ 238 (341)
++.++.|+.||+|-.|++-
T Consensus 275 sQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 275 SQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred CceEEEEEccCeeehhhhH
Confidence 9999999999999999753
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-20 Score=135.83 Aligned_cols=272 Identities=19% Similarity=0.267 Sum_probs=192.5
Q ss_pred CCEEEEEeC----CCeEEEEcCCCc--ce-eeEecCcccceeEEEEecCCC-EEEEecCC-------CcEEEEECCCC--
Q psy17863 25 GSYCLTCGS----DKKIKLWNPYRN--LL-LKTYGGHAHEVNDATAACDSS-QIASGASD-------KSVILWEVTTG-- 87 (341)
Q Consensus 25 ~~~l~t~~~----dg~i~iw~~~~~--~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d-------g~i~iw~~~~~-- 87 (341)
.-.|++|.. |+.|.+.++..+ .. -+.|..|.+.|..++-+|-.+ .|+++..+ ..+.||.+...
T Consensus 26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~ 105 (370)
T KOG1007|consen 26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG 105 (370)
T ss_pred ceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccC
Confidence 334555543 677777765543 22 345667889999999999554 55555432 23789998643
Q ss_pred -------ceeeeec-ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEc
Q psy17863 88 -------QPVRRWR-EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQL 159 (341)
Q Consensus 88 -------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~ 159 (341)
+++..+. .+-+.|.|+.|.|++..+++.. |..|.+|++...... ...+. ..++..
T Consensus 106 ~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~-vaev~-------ss~s~e-------- 168 (370)
T KOG1007|consen 106 QSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI-VAEVL-------SSESAE-------- 168 (370)
T ss_pred ccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcch-heeec-------cccccc--------
Confidence 2333343 3456899999999999999887 788999999876521 10000 000000
Q ss_pred cCCcceeeeEeeecCceEEEEEECC--CCceEEEeCCCceEEEEccccc--------CCCCeEEEEEccCCC-EEEEeec
Q psy17863 160 VDSSQISTLIHSVGKAVVNSLCSHP--TRKHIMSACGNNVKLWTAEEDY--------GQEPIVDACFTRDCQ-CILTCST 228 (341)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~--------~~~~i~~~~~~~~~~-~l~~~~~ 228 (341)
+.....+-+|+| ++..+++..++++..||.++.. |...+..+.|+|+.+ +|++|+.
T Consensus 169 -------------~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gD 235 (370)
T KOG1007|consen 169 -------------MRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGD 235 (370)
T ss_pred -------------ccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCC
Confidence 223356667887 7899999999999999998744 777899999999865 5788999
Q ss_pred CCeEEEEecccc-ceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCC----------------------
Q psy17863 229 DECLRLFDKATG-ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS---------------------- 285 (341)
Q Consensus 229 d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------------- 285 (341)
||.|++||.+.- .++.++.+|...++++++.... .+++++|+.|..|.+|...+-.
T Consensus 236 dgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h-dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer 314 (370)
T KOG1007|consen 236 DGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH-DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEER 314 (370)
T ss_pred CccEEEEeccCCCccccccCCCceEEEEEEecCcc-ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHh
Confidence 999999998754 5789999999999999543333 4588999999999999653211
Q ss_pred -------ceEEEEeeeeccceEEEEEcCCCcEE-EEeC-CCcEEEEEcccccC
Q psy17863 286 -------QISTLIHSVGKAVVNSLCSHPTRKHI-MSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 286 -------~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~-d~~i~vw~~~~~~~ 329 (341)
.+.++. .|...|.+++||....++ |+-+ ||++.|=.++...+
T Consensus 315 ~kpL~dg~l~tyd--ehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~~k 365 (370)
T KOG1007|consen 315 VKPLQDGQLETYD--EHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRFLK 365 (370)
T ss_pred ccccccccccccc--ccccceEEEeeccCCCeeEEEeccCceEEeecCChhhh
Confidence 122344 688999999999877765 5556 99999887766543
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-22 Score=170.31 Aligned_cols=236 Identities=21% Similarity=0.311 Sum_probs=177.6
Q ss_pred CCcEEEEEEccCCCE----EEEEeCCCeEEEEcCCC------cceeeEecCcccceeEEEEecCCC-EEEEecCCCcEEE
Q psy17863 13 QGAIRAVRFNVDGSY----CLTCGSDKKIKLWNPYR------NLLLKTYGGHAHEVNDATAACDSS-QIASGASDKSVIL 81 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~----l~t~~~dg~i~iw~~~~------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i 81 (341)
..+-+.++|.+.|.. ||.|..||.|.+||... ...+.+...|.+.|..+.|++... .|++|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 356788999987765 88899999999999765 235566788999999999999654 9999999999999
Q ss_pred EECCCCceeeee--cccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCC----------cCeEEeecCCCc--eEE
Q psy17863 82 WEVTTGQPVRRW--REHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSH----------HPIQCCLDSKDS--QIF 146 (341)
Q Consensus 82 w~~~~~~~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~~~~--~~~ 146 (341)
||+.+.+.-..+ ....+.|.+++|+. ....|++++.+|.+.|||++..+. .....+.++++. .++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999876544444 22567899999997 556788999999999999998742 112234444443 455
Q ss_pred EeeccC---eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCC-CE
Q psy17863 147 CGSSDG---KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDC-QC 222 (341)
Q Consensus 147 ~~~~~g---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~ 222 (341)
+++.|. .|.+||++......... ..|...|.++.|++.+ .+
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~-----------------------------------~~H~~GilslsWc~~D~~l 268 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKIL-----------------------------------EGHQRGILSLSWCPQDPRL 268 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhh-----------------------------------cccccceeeeccCCCCchh
Confidence 555443 47777766533222111 1145667788888755 78
Q ss_pred EEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCC-EEEEecCCCcEEEEeeeCCC
Q psy17863 223 ILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS-QIFCGSSDGKIYKWQLVDSS 285 (341)
Q Consensus 223 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 285 (341)
+++++.|+.|.+|+.++++.+.++....+.++.+ .|.|... .+++++-||.|.|+.+....
T Consensus 269 llSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv--~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 269 LLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDV--QWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred hhcccCCCCeeEecCCCceEeeecCCCCcceeee--eecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999999999999999999998866666666 6777665 78888999999999987654
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-19 Score=137.28 Aligned_cols=232 Identities=13% Similarity=0.163 Sum_probs=166.1
Q ss_pred cceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCC--CeEEEEEecCCCC--
Q psy17863 56 HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD--NTVMMWDVKSRSH-- 131 (341)
Q Consensus 56 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~-- 131 (341)
..+..+.|..+...|..|+.|| .++|+.+.-............|..+-|+. .+++..+.+ +.+++.+++.+..
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEE
Confidence 4566777998998999999998 78888766544333233344566666764 456555544 4588888776541
Q ss_pred -----cCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEee-ecCceEEEEEECCCCceEEEeCCCceEEEEcccc
Q psy17863 132 -----HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS-VGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED 205 (341)
Q Consensus 132 -----~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 205 (341)
.++..... +..+++++-.+ .|++||+++.+.+.++... .+...+..+++++
T Consensus 83 e~~fpt~IL~Vrm-Nr~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~--------------------- 139 (391)
T KOG2110|consen 83 EIFFPTSILAVRM-NRKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN--------------------- 139 (391)
T ss_pred EEecCCceEEEEE-ccceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC---------------------
Confidence 11111222 22244444333 3889998888877777544 2222233333333
Q ss_pred cCCCCeEEEEEccCCCEEEE--eecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCc-EEEEeee
Q psy17863 206 YGQEPIVDACFTRDCQCILT--CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGK-IYKWQLV 282 (341)
Q Consensus 206 ~~~~~i~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~ 282 (341)
.+.+++. ....|.|.+||..+-+++..+..|.+.+.++ +|+++|.+||++++.|+ |||+.+.
T Consensus 140 -------------~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAal--afs~~G~llATASeKGTVIRVf~v~ 204 (391)
T KOG2110|consen 140 -------------ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAAL--AFSPDGTLLATASEKGTVIRVFSVP 204 (391)
T ss_pred -------------CCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEE--EECCCCCEEEEeccCceEEEEEEcC
Confidence 3334443 2336889999999999999999999999988 99999999999999997 8999999
Q ss_pred CCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 283 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 283 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
+|+.+..++.......|.+++|+|++++|++.+ .++|++|++++..
T Consensus 205 ~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 205 EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 999999999655567899999999999999999 9999999998755
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=146.77 Aligned_cols=250 Identities=16% Similarity=0.267 Sum_probs=149.8
Q ss_pred ceeeeEEeeeCCcEEEEEEccCC-CEEEEEeCCCeEEEEcCCCcceeeEe---cCcccceeEEEEecCCCEEEEecCCCc
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDG-SYCLTCGSDKKIKLWNPYRNLLLKTY---GGHAHEVNDATAACDSSQIASGASDKS 78 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~ 78 (341)
.++...+.+|.++|+.+.|.|+. +++++++.|..|++|++++..++..+ .+|...|.++.|++++.++++++.|.+
T Consensus 125 ~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhs 204 (385)
T KOG1034|consen 125 GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHS 204 (385)
T ss_pred hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcce
Confidence 35677899999999999999975 68889999999999999999998887 579999999999999999999999999
Q ss_pred EEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEE--ecCCCCcCeEEeecCCCceEEEeeccCeEEE
Q psy17863 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD--VKSRSHHPIQCCLDSKDSQIFCGSSDGKIYK 156 (341)
Q Consensus 79 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 156 (341)
+++|++...+....++ .++.|+|++...-.-. -...+.+ ........+.|..+.. +++++-+-++.|..
T Consensus 205 lk~W~l~~~~f~~~lE------~s~~~~~~~t~~pfpt--~~~~fp~fst~diHrnyVDCvrw~g-d~ilSkscenaI~~ 275 (385)
T KOG1034|consen 205 LKLWRLNVKEFKNKLE------LSITYSPNKTTRPFPT--PKTHFPDFSTTDIHRNYVDCVRWFG-DFILSKSCENAIVC 275 (385)
T ss_pred EEEEecChhHHhhhhh------hhcccCCCCccCcCCc--cccccccccccccccchHHHHHHHh-hheeecccCceEEE
Confidence 9999998543222221 0122333222100000 0011111 1111111111111111 34444444445555
Q ss_pred EEccC-CcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEE
Q psy17863 157 WQLVD-SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLF 235 (341)
Q Consensus 157 ~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 235 (341)
|...+ .+.+......... . .++.. ++-..........+|.|-++.|+.|...|.+.+|
T Consensus 276 w~pgkl~e~~~~vkp~es~--~----------Ti~~~---------~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 276 WKPGKLEESIHNVKPPESA--T----------TILGE---------FDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW 334 (385)
T ss_pred EecchhhhhhhccCCCccc--e----------eeeeE---------eccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence 54411 1111101000000 0 00000 0000001112345677778999999999999999
Q ss_pred ecccccee--eeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeee
Q psy17863 236 DKATGELL--EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 282 (341)
Q Consensus 236 d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (341)
|++..++. .++..+...-..-..+|+.|+..|+...+|++|.-||..
T Consensus 335 dL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 335 DLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99877652 233323332233344899999999999999999999854
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-20 Score=160.43 Aligned_cols=283 Identities=16% Similarity=0.267 Sum_probs=207.4
Q ss_pred EcCCCcceeeEecCcccceeEEEEecCC-CEEEEecCCCcEEEEECCCC-------ceeeeecccCccEEEEEEcCCCcE
Q psy17863 40 WNPYRNLLLKTYGGHAHEVNDATAACDS-SQIASGASDKSVILWEVTTG-------QPVRRWREHASKVTCVKFNEDSSV 111 (341)
Q Consensus 40 w~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~ 111 (341)
|++ .|..+..+..|...+..++.+++. .++++|+.||+|++|+...- +...++......+.++.+.++++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 664 578888888999999999988765 89999999999999998642 223344445778999999999999
Q ss_pred EEEecCCCeEEEEEecCCCC----------------cCeEEe---ecCCCc-eEEEeeccCeEEEEEccCCcceeeeEee
Q psy17863 112 VISGSQDNTVMMWDVKSRSH----------------HPIQCC---LDSKDS-QIFCGSSDGKIYKWQLVDSSQISTLIHS 171 (341)
Q Consensus 112 l~~~~~d~~i~iwd~~~~~~----------------~~~~~~---~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 171 (341)
+|.++.||.|.+.+++.... ..+..+ ...... .++.++..+.+..||+++......+...
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 99999999999999876211 111111 111222 7888899999999999999998888888
Q ss_pred ecCceEEEEEECCCCceEEEeCC-CceEEEEccccc--------CCCCeEEEEEccCC---CEEE-Eee-cCCeEEEEec
Q psy17863 172 VGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY--------GQEPIVDACFTRDC---QCIL-TCS-TDECLRLFDK 237 (341)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~--------~~~~i~~~~~~~~~---~~l~-~~~-~d~~i~i~d~ 237 (341)
...+.+++++.+|.+.+++.|+. |.+.+||++-.. +..+++.+..+|-. ...+ ++. ..+.|.+|++
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 88889999999999999999986 889999998644 45778888777632 3444 444 5778999999
Q ss_pred cccceeeeecCc-----------------ccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCce-------------
Q psy17863 238 ATGELLEEYKGH-----------------KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQI------------- 287 (341)
Q Consensus 238 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------------- 287 (341)
.+|.....+... ...+..+.+++...+.++.+|+.|..|+.||....+..
T Consensus 1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~ 1352 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYST 1352 (1431)
T ss_pred ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccc
Confidence 988655554322 11122233345555678999999999999997433211
Q ss_pred ----------------E-------------------E------EEeeeeccceEEEEEcCCC-cEEEEeC-CCcEEEEE
Q psy17863 288 ----------------S-------------------T------LIHSVGKAVVNSLCSHPTR-KHIMSAC-GNNVKLWT 323 (341)
Q Consensus 288 ----------------~-------------------~------~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~vw~ 323 (341)
. . .....|..+|+++++.... .+|++++ ||.|+||.
T Consensus 1353 ~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1353 NSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 0 0 0111356788888876543 5778888 99999994
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-21 Score=154.66 Aligned_cols=242 Identities=18% Similarity=0.270 Sum_probs=173.3
Q ss_pred EecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC--------CceeeeecccCccEEEEEEcCCCcEEEEecCCCeE
Q psy17863 50 TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT--------GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121 (341)
Q Consensus 50 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 121 (341)
++..|...|..++|+|....|++++.||++.+|+++. -+++.++++|.++|.|+++.+++..+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 5567889999999999999999999999999999943 15678899999999999999999999999999999
Q ss_pred EEEEecCCC------------------CcCe-EEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEE
Q psy17863 122 MMWDVKSRS------------------HHPI-QCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS 182 (341)
Q Consensus 122 ~iwd~~~~~------------------~~~~-~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 182 (341)
+.|++.... ...+ ..........|++++.||+++.|+.....+ ..+..........++.+
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence 999765321 1122 223344556799999999999999877655 22222111111122221
Q ss_pred CCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcc-------cceeE
Q psy17863 183 HPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK-------SGDFR 255 (341)
Q Consensus 183 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~~~~~ 255 (341)
-... -...++...-+.-.+++++....+..+.... ..+..
T Consensus 448 ~ss~---------------------------------~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~ 494 (577)
T KOG0642|consen 448 TSSR---------------------------------PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINK 494 (577)
T ss_pred ccch---------------------------------hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccce
Confidence 1110 0112222222333333444433333332211 11223
Q ss_pred EEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccC
Q psy17863 256 IECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 256 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~ 329 (341)
+ ...|...+.+++..|+.|+++|..+++.+.... .|...++++++.|+|.+|++++ |+.+++|.+.....
T Consensus 495 v--Vs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~--a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 495 V--VSHPTADITFTAHEDRSIRFFDNKTGKILHSMV--AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred E--EecCCCCeeEecccCCceecccccccccchhee--eccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 3 677888899999999999999999999999998 8999999999999999999999 99999999976543
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=152.10 Aligned_cols=261 Identities=14% Similarity=0.162 Sum_probs=185.3
Q ss_pred CeEEEEcCCCc-ceeeEecCcccceeEEEEec-CCCEEEEecCCCcEEEEECCCCce--eee----ecccCccEEEEEEc
Q psy17863 35 KKIKLWNPYRN-LLLKTYGGHAHEVNDATAAC-DSSQIASGASDKSVILWEVTTGQP--VRR----WREHASKVTCVKFN 106 (341)
Q Consensus 35 g~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~--~~~----~~~~~~~v~~~~~~ 106 (341)
+.+.+|++... .+...+. ....|.++.|+| +..+++.|..+|.|.+||+..+.. ... ...|..+++.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 57999998876 3444444 667899999999 567788889999999999987755 222 23588999999997
Q ss_pred CCC--cEEEEecCCCeEEEEEecCCCC--------------------cCeEEeecC--CCceEEEeeccCeEEEEEccCC
Q psy17863 107 EDS--SVVISGSQDNTVMMWDVKSRSH--------------------HPIQCCLDS--KDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 107 ~~~--~~l~~~~~d~~i~iwd~~~~~~--------------------~~~~~~~~~--~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
.+. .-+++++.||.|..|+++.-.. .....+.++ ....+++|+.+|.|..-.....
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 643 4599999999999998775321 122222222 3347888999998876433322
Q ss_pred cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEecc-ccc
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKA-TGE 241 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~ 241 (341)
+...... +.+.. .-..|.+++.++.++|=+..++..+.|.++++|... ...
T Consensus 381 ~~~~~~~------------~~~~~----------------~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~ 432 (555)
T KOG1587|consen 381 TPAPEVS------------YKGHS----------------TFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIAS 432 (555)
T ss_pred ccccccc------------ccccc----------------cccccCcceEeeecCCCccceeeeeccceeEeccccCCCC
Confidence 2111000 00000 001156788888888876666655559999999987 667
Q ss_pred eeeeecCcccceeEEEEEeCCCCC-EEEEecCCCcEEEEeeeCCC--ceEEEEeeeeccceEEEEEcCCCcEEEEeC-CC
Q psy17863 242 LLEEYKGHKSGDFRIECCLDSKDS-QIFCGSSDGKIYKWQLVDSS--QISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GN 317 (341)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~ 317 (341)
++..+..+...++.+ +|||-.. .++++..||.+.+||+.... ++.+.. .+....+.+.|++.|+.|+.|. .|
T Consensus 433 Pl~~~~~~~~~v~~v--aWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~--~~~~~l~~~~~s~~g~~lavGd~~G 508 (555)
T KOG1587|consen 433 PLLSLDSSPDYVTDV--AWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK--VCSPALTRVRWSPNGKLLAVGDANG 508 (555)
T ss_pred cchhhhhccceeeee--EEcCcCceEEEEEcCCCceehhhhhccccCCccccc--ccccccceeecCCCCcEEEEecCCC
Confidence 777777777777777 7887654 57788889999999997654 444444 4567788889999999999999 99
Q ss_pred cEEEEEccccc
Q psy17863 318 NVKLWTAEEDY 328 (341)
Q Consensus 318 ~i~vw~~~~~~ 328 (341)
++.+|++....
T Consensus 509 ~~~~~~l~~~l 519 (555)
T KOG1587|consen 509 TTHILKLSESL 519 (555)
T ss_pred cEEEEEcCchh
Confidence 99999997543
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=141.14 Aligned_cols=296 Identities=13% Similarity=0.158 Sum_probs=204.7
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEE-ecCCCcEEEEECCCCceeeeeccc
Q psy17863 18 AVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIAS-GASDKSVILWEVTTGQPVRRWREH 96 (341)
Q Consensus 18 ~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~ 96 (341)
-.+|||+|+++|+.+.- .+.|-|.++.+..+.+. .-..|.-+.|..|..+++. ...++.|.+|++...+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 46799999999998855 78899988877665554 3456788999988877554 567889999999998888888888
Q ss_pred CccEEEEEEcCCCcE-EEEecCCCeEEEEEecCCCC-------cCeEEeecCCCceEEEeeccCeE-EEEEcc---CCcc
Q psy17863 97 ASKVTCVKFNEDSSV-VISGSQDNTVMMWDVKSRSH-------HPIQCCLDSKDSQIFCGSSDGKI-YKWQLV---DSSQ 164 (341)
Q Consensus 97 ~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~i-~~~d~~---~~~~ 164 (341)
..++..++|+|||+. |.+...+-.|.+|.+.+.+. .......+.+++.+.+....... ..+++. .-..
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l 170 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL 170 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence 899999999999954 55666789999999988652 22334444455444433322110 000000 0001
Q ss_pred eeeeEeeecCceEEEEEECCCCceEEEeCC---CceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccc
Q psy17863 165 ISTLIHSVGKAVVNSLCSHPTRKHIMSACG---NNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGE 241 (341)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 241 (341)
+..+.. ..-....+.|+|+|..+++-.. -.+..|.- .-.+..++|+|.++++++|+.|+.+|+.+--+.+
T Consensus 171 l~~f~~--dT~DltgieWsPdg~~laVwd~~Leykv~aYe~-----~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk 243 (447)
T KOG4497|consen 171 LKEFKL--DTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER-----GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK 243 (447)
T ss_pred HHhcCC--CcccccCceECCCCcEEEEecchhhheeeeeee-----ccceeEEEeccccceEEeeccchhhhhhceeeee
Confidence 111111 1223678899999999987654 23333332 3568889999999999999999999987643211
Q ss_pred ee------------------------------------------------------------eeec------CcccceeE
Q psy17863 242 LL------------------------------------------------------------EEYK------GHKSGDFR 255 (341)
Q Consensus 242 ~~------------------------------------------------------------~~~~------~~~~~~~~ 255 (341)
+. ..++ .....+..
T Consensus 244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~ 323 (447)
T KOG4497|consen 244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK 323 (447)
T ss_pred ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence 10 0011 01111222
Q ss_pred EEEEeCCCCCEEEEecC--CCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccc
Q psy17863 256 IECCLDSKDSQIFCGSS--DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 256 ~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~ 327 (341)
.+|++|..++++-.+ -+.+.+||++..+.-..+. ...+|....|+|....|+.+. ...+++|.....
T Consensus 324 --lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi---Qk~piraf~WdP~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 324 --LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI---QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred --eeecCCceEEeeecCCCCceEEEEechhhhhhhhhh---hccceeEEEeCCCCceEEEEcCCceEEEEcCCCc
Confidence 489999988888754 4679999998887766665 567899999999999999888 778999988764
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=146.45 Aligned_cols=205 Identities=20% Similarity=0.246 Sum_probs=147.6
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecc-
Q psy17863 17 RAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE- 95 (341)
Q Consensus 17 ~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~- 95 (341)
.+++|+++|..+++|+.||++|+|++.+...+.....|...|.++.|+||++.|++.+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 689999999999999999999999988888888888899999999999999999999999 899999999966655432
Q ss_pred -cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecC
Q psy17863 96 -HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK 174 (341)
Q Consensus 96 -~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 174 (341)
.+.....+.|+.++. . -.+++.....+
T Consensus 227 ~k~~~~~~cRF~~d~~------~-~~l~laa~~~~--------------------------------------------- 254 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNA------Q-ETLRLAASQFP--------------------------------------------- 254 (398)
T ss_pred ccchhhhhceecccCC------C-ceEEEEEecCC---------------------------------------------
Confidence 122233444443320 0 01111111100
Q ss_pred ceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccc-cceeeeecCcccce
Q psy17863 175 AVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKAT-GELLEEYKGHKSGD 253 (341)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~ 253 (341)
+..+.. -.+.+|+-.. .+..+.+. ....+
T Consensus 255 ---------------------------------------------~~~v~~----~~~~~w~~~~~l~~~~~~~-~~~si 284 (398)
T KOG0771|consen 255 ---------------------------------------------GGGVRL----CDISLWSGSNFLRLRKKIK-RFKSI 284 (398)
T ss_pred ---------------------------------------------CCceeE----EEeeeeccccccchhhhhh-ccCcc
Confidence 000100 0133343211 11112222 22346
Q ss_pred eEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccc
Q psy17863 254 FRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~ 327 (341)
.++ +.+++|++++.|+.||.|.|++..+.+.++-.+. .|...|+.+.|+||.+++++.+ |....|..+.-+
T Consensus 285 Ssl--~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~-aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 285 SSL--AVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKE-AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred eeE--EEcCCCcEEEEeccCCcEEEEEeceeeeeEeehh-hheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 666 8999999999999999999999988888777765 7889999999999999999988 999999888763
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-18 Score=140.54 Aligned_cols=303 Identities=9% Similarity=0.074 Sum_probs=195.8
Q ss_pred CEEE-EEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEE
Q psy17863 26 SYCL-TCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVK 104 (341)
Q Consensus 26 ~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 104 (341)
++++ +-..++.|.+.|..+.+.+.++......-..+.|+||++++++++.||.|.++|+.+++.+.+++.. .....++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEE
Confidence 3443 4556899999999999999999865554455789999999999999999999999999999998754 4568899
Q ss_pred EcCCCcEEEEec-CCCeEEEEEecCCCCc---------------CeEEe-ecCCCc-eEEEeeccCeEEEEEccCCccee
Q psy17863 105 FNEDSSVVISGS-QDNTVMMWDVKSRSHH---------------PIQCC-LDSKDS-QIFCGSSDGKIYKWQLVDSSQIS 166 (341)
Q Consensus 105 ~~~~~~~l~~~~-~d~~i~iwd~~~~~~~---------------~~~~~-~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~ 166 (341)
+++||++++++. .++.+.++|.++.+.. ....+ ..+... .+++.-+.+.|.+.|....+.+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 999999998775 5899999998875421 11122 223333 34444455888888877765543
Q ss_pred eeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc-----------CCCCeEEEE-------E--ccCCCEEE
Q psy17863 167 TLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY-----------GQEPIVDAC-------F--TRDCQCIL 224 (341)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~-----------~~~~i~~~~-------~--~~~~~~l~ 224 (341)
..... .........++|++++++++. .+.+.++|..+.. +..+...+- | ...+...+
T Consensus 165 ~~~i~-~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~ 243 (369)
T PF02239_consen 165 VTTIK-VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAI 243 (369)
T ss_dssp EEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEE
T ss_pred eeeec-ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceec
Confidence 33222 334577899999999887754 3677777766532 222333221 1 11223332
Q ss_pred EeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEe----cCCCcEEEEeeeCCCceEEEEeeeeccceE
Q psy17863 225 TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG----SSDGKIYKWQLVDSSQISTLIHSVGKAVVN 300 (341)
Q Consensus 225 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 300 (341)
+.-....+.+||..+.+.++++.....+ ..+ ..+|+++++++. ...+.|.++|.++.+....+.. .....+.
T Consensus 244 ~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi--~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~-~~~~~~~ 319 (369)
T PF02239_consen 244 PLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFI--KTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP-GPGKRVV 319 (369)
T ss_dssp EEEE--TTT-STTTBTSEEEEEE-SSSS---E--E--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH-HHT--EE
T ss_pred ccccCCccccchhhcCeEEEEEECCCCc-cee--ecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec-cCCCcEe
Confidence 2233345667898999999999876666 444 679999999987 4568999999999877777652 1223589
Q ss_pred EEEEcCCCcEEEEeC---CCcEEEEEcccccCCccce
Q psy17863 301 SLCSHPTRKHIMSAC---GNNVKLWTAEEDYGQAGLS 334 (341)
Q Consensus 301 ~~~~~~~~~~l~~~~---d~~i~vw~~~~~~~~~~~~ 334 (341)
.+.|++||+.+..+. ++.|.+||..+....+.+.
T Consensus 320 h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 320 HMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 999999999777666 3379999998877665544
|
... |
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-19 Score=149.83 Aligned_cols=286 Identities=11% Similarity=0.154 Sum_probs=203.4
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCC---CEEEEecCCCcEEEEECCCCceeee
Q psy17863 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDS---SQIASGASDKSVILWEVTTGQPVRR 92 (341)
Q Consensus 16 v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iw~~~~~~~~~~ 92 (341)
-..-.|++|+++++... +..|.||...+++++..+.+|..+++.+.+.|.. .++++++.||.|++||...++.+++
T Consensus 19 ~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt 97 (792)
T KOG1963|consen 19 KSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKT 97 (792)
T ss_pred ecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEE
Confidence 33456899999888766 5689999999999999999999999999998854 4678999999999999999999988
Q ss_pred ecccCccEEEEEEcC---CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcce-eee
Q psy17863 93 WREHASKVTCVKFNE---DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQI-STL 168 (341)
Q Consensus 93 ~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~-~~~ 168 (341)
+..+ .++..+.+.| +....+..+.+. ..+....+ ....++.+-+.+.+.... ..+
T Consensus 98 ~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~-~~~~~~~s-------------------~~~~~q~~~~~~~t~~~~~~d~ 156 (792)
T KOG1963|consen 98 FDNN-LPVHALVYKPAQADISANVYVSVED-YSILTTFS-------------------KKLSKQSSRFVLATFDSAKGDF 156 (792)
T ss_pred EecC-CceeEEEechhHhCccceeEeeccc-ceeeeecc-------------------cccccceeeeEeeeccccchhh
Confidence 8643 3445554433 111122111111 01111000 011111222222111100 000
Q ss_pred EeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc-----------CCCCeEEEEEccCCCEEEEeecCCeEEEEec
Q psy17863 169 IHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY-----------GQEPIVDACFTRDCQCILTCSTDECLRLFDK 237 (341)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 237 (341)
... . .....+..++.+.+........+.+|...... |...+++.+++|++++++++..||.|.+|.-
T Consensus 157 ~~~-~-~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d 234 (792)
T KOG1963|consen 157 LKE-H-QEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRD 234 (792)
T ss_pred hhh-h-cCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEec
Confidence 000 1 11467788888888888888888888877632 5667899999999999999999999999973
Q ss_pred cc----cceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEE
Q psy17863 238 AT----GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS 313 (341)
Q Consensus 238 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 313 (341)
.. ......+.-|..++.++ +|+++|.+|++|+.+|.+.+|.+.+++ .+-++ .-.++|..+.+|||+.+.+.
T Consensus 235 ~~~~~~~~t~t~lHWH~~~V~~L--~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLP--RLgs~I~~i~vS~ds~~~sl 309 (792)
T KOG1963|consen 235 FGSSDDSETCTLLHWHHDEVNSL--SFSSDGAYLLSGGREGVLVLWQLETGK-KQFLP--RLGSPILHIVVSPDSDLYSL 309 (792)
T ss_pred cccccccccceEEEeccccccee--EEecCCceEeecccceEEEEEeecCCC-ccccc--ccCCeeEEEEEcCCCCeEEE
Confidence 32 12345667788889888 899999999999999999999999988 33444 46789999999999999998
Q ss_pred eC-CCcEEEEEcccccCC
Q psy17863 314 AC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 314 ~~-d~~i~vw~~~~~~~~ 330 (341)
.. |+.|.+-...+....
T Consensus 310 ~~~DNqI~li~~~dl~~k 327 (792)
T KOG1963|consen 310 VLEDNQIHLIKASDLEIK 327 (792)
T ss_pred EecCceEEEEeccchhhh
Confidence 88 999999988654433
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.7e-19 Score=131.44 Aligned_cols=241 Identities=13% Similarity=0.176 Sum_probs=179.8
Q ss_pred eEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCc---ceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 7 QTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN---LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 7 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
+.+..-..+|+|.+|++|+..+|.+-....|.||..... +..++++.|...|+.+.|+|..+.|++++.|..-++|.
T Consensus 4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence 344445689999999999999999999999999986654 46788999999999999999999999999999999999
Q ss_pred CCC-C--ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEcc
Q psy17863 84 VTT-G--QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLV 160 (341)
Q Consensus 84 ~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~ 160 (341)
... + ++.-.+..++...+++.|+|.++.+++|+....|.+|-++....- |= .
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW------------------------WV-s 138 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDW------------------------WV-S 138 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccce------------------------eh-h
Confidence 843 3 344455668999999999999999999999988888877654310 00 0
Q ss_pred CCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEecc--
Q psy17863 161 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKA-- 238 (341)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-- 238 (341)
.... ......|+++.|+|++-++++|+.|+..++|..-
T Consensus 139 ------Khik----------------------------------kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK 178 (361)
T KOG1523|consen 139 ------KHIK----------------------------------KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIK 178 (361)
T ss_pred ------hhhC----------------------------------CccccceeeeeccCCcceecccccCcceeEEEEeee
Confidence 0000 0124557778888888888888889888888632
Q ss_pred ----------------ccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCC-ceEEEEeeeeccceEE
Q psy17863 239 ----------------TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS-QISTLIHSVGKAVVNS 301 (341)
Q Consensus 239 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~ 301 (341)
-|+++.++....+.+..+ .|+|+|+.|+-.+.|..+.+-|..... .+..+. ...-+..+
T Consensus 179 ~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v--~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~--~~~lP~ls 254 (361)
T KOG1523|consen 179 GVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGV--LFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVA--TAQLPLLS 254 (361)
T ss_pred ccccCCCCCCCccCCcHHHHHHhhccCCCceeee--EeCCCCCEeeEecCCCceEEeecCCCchhccchh--hccCCcee
Confidence 133444554444555555 899999999999999999999976654 344443 23367788
Q ss_pred EEEcCCCcEEEEeCC
Q psy17863 302 LCSHPTRKHIMSACG 316 (341)
Q Consensus 302 ~~~~~~~~~l~~~~d 316 (341)
+.|-.+...+++|-|
T Consensus 255 ~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 255 VSWISENSVVAAGYD 269 (361)
T ss_pred eEeecCCceeecCCC
Confidence 888766554444434
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-19 Score=153.23 Aligned_cols=289 Identities=16% Similarity=0.244 Sum_probs=192.1
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcc---cceeEEEEec--CCCEEEEecCCCcEEEEECCCCc
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA---HEVNDATAAC--DSSQIASGASDKSVILWEVTTGQ 88 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~---~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~ 88 (341)
++-..+.|+|-...++++...-.|++||.+.++.+..|..+. ..|+.+.+-. |..++++|+.||.|+||+--...
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 355678899988899999888899999999999888886443 4688888865 45689999999999999743221
Q ss_pred eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeee
Q psy17863 89 PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 168 (341)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 168 (341)
. ....-|+ +|++=...+.+...-|.+.-|.-.+ +++++++.-..|++||.........+
T Consensus 1145 ~-----~~~eLVT--aw~~Ls~~~~~~r~~~~v~dWqQ~~--------------G~Ll~tGd~r~IRIWDa~~E~~~~di 1203 (1387)
T KOG1517|consen 1145 W-----KKPELVT--AWSSLSDQLPGARGTGLVVDWQQQS--------------GHLLVTGDVRSIRIWDAHKEQVVADI 1203 (1387)
T ss_pred c-----CCceeEE--eeccccccCccCCCCCeeeehhhhC--------------CeEEecCCeeEEEEEecccceeEeec
Confidence 0 0000111 2222111222222222333333222 23444444556666666665555544
Q ss_pred EeeecCceEEEEEECC-CCceEEEeC-CCceEEEEccccc----------CCCC--eEEEEEccCCCE-EEEeecCCeEE
Q psy17863 169 IHSVGKAVVNSLCSHP-TRKHIMSAC-GNNVKLWTAEEDY----------GQEP--IVDACFTRDCQC-ILTCSTDECLR 233 (341)
Q Consensus 169 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~i~~~~~~~~~----------~~~~--i~~~~~~~~~~~-l~~~~~d~~i~ 233 (341)
... ....++++.-+. .|..++++. ||.+++||.+... |... |..+.+.++|-. |++|+.||.|+
T Consensus 1204 P~~-s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~ 1282 (1387)
T KOG1517|consen 1204 PYG-SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQ 1282 (1387)
T ss_pred ccC-CCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEE
Confidence 433 334456665443 357777776 6999999987643 4444 899999987655 99999999999
Q ss_pred EEeccccceee--eecCcc--c-ceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEee-----eeccceEEEE
Q psy17863 234 LFDKATGELLE--EYKGHK--S-GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS-----VGKAVVNSLC 303 (341)
Q Consensus 234 i~d~~~~~~~~--~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~ 303 (341)
+||++...... .+..|. + ..+.+ ..++....+|+|+. +.|+||++ .|+.+..++.. ...+.+.+++
T Consensus 1283 ~~DlR~~~~e~~~~iv~~~~yGs~lTal--~VH~hapiiAsGs~-q~ikIy~~-~G~~l~~~k~n~~F~~q~~gs~scL~ 1358 (1387)
T KOG1517|consen 1283 LLDLRMSSKETFLTIVAHWEYGSALTAL--TVHEHAPIIASGSA-QLIKIYSL-SGEQLNIIKYNPGFMGQRIGSVSCLA 1358 (1387)
T ss_pred EEecccCcccccceeeeccccCccceee--eeccCCCeeeecCc-ceEEEEec-ChhhhcccccCcccccCcCCCcceee
Confidence 99998742211 222222 2 25555 77888889999998 99999996 55555554411 2345789999
Q ss_pred EcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 304 SHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 304 ~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
|+|-...||+|. |..|.||..++..
T Consensus 1359 FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1359 FHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ecchhHhhhhccCCceEEEeecCCcC
Confidence 999999999999 9999999987654
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=145.21 Aligned_cols=256 Identities=10% Similarity=0.143 Sum_probs=187.7
Q ss_pred eeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEE-ec-------CCCEEEEecCCCcEEEE
Q psy17863 11 CKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATA-AC-------DSSQIASGASDKSVILW 82 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~-~~-------~~~~l~~~~~dg~i~iw 82 (341)
.|...|.|+.|+.+...+.+++ |..+.+|.-.+......+.-...-+....+ -+ ....++.++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4777888999998887666655 555555543333222222211111111111 11 23468888999999998
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
+ ..++..+....|.+.+.+-.|+|||.-|+++++||.|++|.-...-
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML-------------------------------- 137 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML-------------------------------- 137 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH--------------------------------
Confidence 8 5778888889999999999999999999999999999999844311
Q ss_pred cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEE
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLF 235 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 235 (341)
...+ ......|++++|.|+...++.+.++.+.+-.+..+. |.+-|.++.|++..+.+++|++|-..++|
T Consensus 138 --RStl--~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvW 213 (737)
T KOG1524|consen 138 --RSTV--VQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIW 213 (737)
T ss_pred --HHHH--hhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEee
Confidence 0000 012356999999999999999888887776555432 88999999999999999999999999999
Q ss_pred eccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC
Q psy17863 236 DKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 236 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
|.. |+.+..-..|.-+++++ +|.|+ ..++.++.+ +++ +.. +..+.|..++||+||..++.|+
T Consensus 214 D~~-G~~Lf~S~~~ey~ITSv--a~npd-~~~~v~S~n-t~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 214 DAQ-GANLFTSAAEEYAITSV--AFNPE-KDYLLWSYN-TAR------------FSS-PRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred ccc-CcccccCChhccceeee--eeccc-cceeeeeee-eee------------ecC-CCccceEEEEEcCCCceeeccc
Confidence 965 77888888899999998 88998 556655532 333 221 4567899999999999999998
Q ss_pred -CCcEEEE
Q psy17863 316 -GNNVKLW 322 (341)
Q Consensus 316 -d~~i~vw 322 (341)
.|.+.+=
T Consensus 276 ~~G~v~~A 283 (737)
T KOG1524|consen 276 STGQLIVA 283 (737)
T ss_pred cCceEEEe
Confidence 7765543
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-19 Score=133.20 Aligned_cols=244 Identities=16% Similarity=0.255 Sum_probs=171.0
Q ss_pred eeCCcEEEEEEccCC-----CEEEEEeCCCeEEEEcCCCcc--e--eeEe-----cCcccceeEEEEec-CCCEEEEecC
Q psy17863 11 CKQGAIRAVRFNVDG-----SYCLTCGSDKKIKLWNPYRNL--L--LKTY-----GGHAHEVNDATAAC-DSSQIASGAS 75 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~-----~~l~t~~~dg~i~iw~~~~~~--~--~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~ 75 (341)
.|.-+++.+.|.|+. ++|||.+ ..+|+|.+...+ . ...+ ..+..++++..|+. +.+++.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 378899999999986 3566654 379999876321 1 1111 24667899999987 7788999999
Q ss_pred CCcEEEEECCCCce---eeeecccCccEEEEEEcCCC-cEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeecc
Q psy17863 76 DKSVILWEVTTGQP---VRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSD 151 (341)
Q Consensus 76 dg~i~iw~~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (341)
|-+..|||++++.. ...+-.|..+|..++|...+ +.+++.+.||.+++||++..++..+.
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII---------------- 235 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII---------------- 235 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE----------------
Confidence 99999999998733 55677899999999999843 57889999999999999876532221
Q ss_pred CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEcc-CCCEEEEeecC-
Q psy17863 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTR-DCQCILTCSTD- 229 (341)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d- 229 (341)
|.-.. ...+...++|++ |-+++++-..|
T Consensus 236 -----YE~p~---------------------------------------------~~~pLlRLswnkqDpnymATf~~dS 265 (364)
T KOG0290|consen 236 -----YEDPS---------------------------------------------PSTPLLRLSWNKQDPNYMATFAMDS 265 (364)
T ss_pred -----ecCCC---------------------------------------------CCCcceeeccCcCCchHHhhhhcCC
Confidence 11000 022344444544 33455554444
Q ss_pred CeEEEEecccc-ceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc---eEEEEeeeeccceEEEEEc
Q psy17863 230 ECLRLFDKATG-ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ---ISTLIHSVGKAVVNSLCSH 305 (341)
Q Consensus 230 ~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~ 305 (341)
..|.+.|++.. .++.++++|.+.|..++|+... ...|++++.|..+.+||+...-. ...+......+.|+.+.|+
T Consensus 266 ~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS-~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws 344 (364)
T KOG0290|consen 266 NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHS-SSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWS 344 (364)
T ss_pred ceEEEEEecCCCcceehhhcCcccccceEecCCC-CceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeec
Confidence 45899998754 5788999999999999554333 45899999999999999976322 0011111346789999999
Q ss_pred CC-CcEEEEeCCCcEEEEE
Q psy17863 306 PT-RKHIMSACGNNVKLWT 323 (341)
Q Consensus 306 ~~-~~~l~~~~d~~i~vw~ 323 (341)
+. ...++.+.+.++.+-+
T Consensus 345 ~~~~Dwiai~~~kkleiLR 363 (364)
T KOG0290|consen 345 SSQPDWIAICFGKKLEILR 363 (364)
T ss_pred ccCCCEEEEEecCeeeEEe
Confidence 64 5677777777776644
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=137.75 Aligned_cols=252 Identities=21% Similarity=0.309 Sum_probs=169.0
Q ss_pred eeeeEEeeeCCcEEEEEEcc--CCCEEEEEeCCCeEEEEcCCCcceeeEe--cCcc-cceeEEEEecCCCEEEEecC---
Q psy17863 4 TCVQTIDCKQGAIRAVRFNV--DGSYCLTCGSDKKIKLWNPYRNLLLKTY--GGHA-HEVNDATAACDSSQIASGAS--- 75 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~--~~~~l~t~~~dg~i~iw~~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~--- 75 (341)
+.+..+++|...++.++|.. ....+.+++.||+|++||+........+ ..+. .+..+++....++.+++|..
T Consensus 61 ~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~ 140 (376)
T KOG1188|consen 61 QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTR 140 (376)
T ss_pred hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccccc
Confidence 46778999999999999977 4567889999999999999876555444 4444 46777777767778888754
Q ss_pred -CCcEEEEECCCCce-eeee-cccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCC-----------cCeEEeecC
Q psy17863 76 -DKSVILWEVTTGQP-VRRW-REHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSH-----------HPIQCCLDS 140 (341)
Q Consensus 76 -dg~i~iw~~~~~~~-~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~ 140 (341)
+-.|.+||++..+. ++.+ ..|.+.|+++.|+| +.++|++|+.||.|.+||++.... ..+..+.+.
T Consensus 141 s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~ 220 (376)
T KOG1188|consen 141 SDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWL 220 (376)
T ss_pred CceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeee
Confidence 67799999998766 5555 56999999999999 778999999999999999987542 235555555
Q ss_pred CCc--eEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEcc
Q psy17863 141 KDS--QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTR 218 (341)
Q Consensus 141 ~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 218 (341)
... ++.+-+...+..+|+++.+.....+....-.... ..+...-..+...-...
T Consensus 221 ~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d------------------------~r~~~~~dY~I~~~~~~ 276 (376)
T KOG1188|consen 221 SKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADD------------------------LRKEDNCDYVINEHSPG 276 (376)
T ss_pred cCCcceEEEEEccCceeEEEccCCChhhcccCccchhhh------------------------HHhhhhhhheeecccCC
Confidence 555 7888888999999998887654433221100000 00000000011111111
Q ss_pred CCCEEEEeec-CCeEEEEecc---c---cceeeeecC-cccceeEEEEEeCCCCCEEEEecCCCcEEEEee
Q psy17863 219 DCQCILTCST-DECLRLFDKA---T---GELLEEYKG-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 281 (341)
Q Consensus 219 ~~~~l~~~~~-d~~i~i~d~~---~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (341)
+....+.++. -+...++-+. + .+.+..+.+ |..-+..+ .|...+.++++|++||.+.+|..
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i--~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDI--LFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred CcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHH--hhhcccceeeccCCCceEEEEec
Confidence 2233333333 4444444332 2 344566666 44444444 67778889999999999999985
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-19 Score=137.33 Aligned_cols=273 Identities=19% Similarity=0.247 Sum_probs=169.8
Q ss_pred CCcEEEEEEccCCC-EEEEEeCCCeEEEEcCCCcc---------eeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 13 QGAIRAVRFNVDGS-YCLTCGSDKKIKLWNPYRNL---------LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 13 ~~~v~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
..+|..+.|.++.. .+|||+.|..|++|.+..+. .+..+..|...|+++.|+|+|+.|++|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 47899999999776 99999999999999865432 234567899999999999999999999999999999
Q ss_pred ECC--------C--------CceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEE
Q psy17863 83 EVT--------T--------GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIF 146 (341)
Q Consensus 83 ~~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 146 (341)
... + ......+.+|...|..++|+|++.++++++.|..+++||+..+..
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l--------------- 157 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL--------------- 157 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee---------------
Confidence 865 2 112345678999999999999999999999999999999887651
Q ss_pred EeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEcccccCCCCeEEEEEccCCCEEEE
Q psy17863 147 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDYGQEPIVDACFTRDCQCILT 225 (341)
Q Consensus 147 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 225 (341)
...+. .+...+..++|.|-++++++-+. ...+.+...... .+..+.. ...++-
T Consensus 158 ------------------~~~~~--dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~---~~~~~~~---~~m~~~ 211 (434)
T KOG1009|consen 158 ------------------LAILD--DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQ---VIKRHGL---DIMPAK 211 (434)
T ss_pred ------------------Eeecc--ccccccceeecchhhhhhhhhccCcccceeeeeeee---eeeeeee---eEeeec
Confidence 11111 13344677777777777766543 223333322211 1111110 000000
Q ss_pred eecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecC----C-----CcEEEEeeeCC-CceEEEEeeee
Q psy17863 226 CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS----D-----GKIYKWQLVDS-SQISTLIHSVG 295 (341)
Q Consensus 226 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d-----g~i~iwd~~~~-~~~~~~~~~~~ 295 (341)
....+ .++..+-+...+..-..-+++|+|+|.++++.+. . +..++++-... ++...++ ..
T Consensus 212 ~~~~~--------e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp--~~ 281 (434)
T KOG1009|consen 212 AFNER--------EGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLP--SP 281 (434)
T ss_pred ccCCC--------CcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecC--CC
Confidence 01111 1111111211112222234478899998887532 2 23455553322 2333333 33
Q ss_pred ccceEEEEEcC------------------CCcEEEEeCCCcEEEEEcccccCCccceee
Q psy17863 296 KAVVNSLCSHP------------------TRKHIMSACGNNVKLWTAEEDYGQAGLSSL 336 (341)
Q Consensus 296 ~~~v~~~~~~~------------------~~~~l~~~~d~~i~vw~~~~~~~~~~~~~~ 336 (341)
..+...+.|+| -+..+|.++...|+|||.+.......+.++
T Consensus 282 ~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~ni 340 (434)
T KOG1009|consen 282 KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNI 340 (434)
T ss_pred CcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeee
Confidence 44445555544 344567777788999999886665555443
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-18 Score=127.40 Aligned_cols=242 Identities=14% Similarity=0.192 Sum_probs=164.9
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCccc--ceeEEEEecCCCEEE-EecCC------CcEEEEECC
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH--EVNDATAACDSSQIA-SGASD------KSVILWEVT 85 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~-~~~~d------g~i~iw~~~ 85 (341)
...+++|+.|...+++|..+| .+||+.+--+.....+.+.+ .+..+-| ..++|+ +|+.+ ..+.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 345699999999999988776 89999765433222222222 2333333 234444 44433 569999966
Q ss_pred CCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcce
Q psy17863 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
..+++.++. ...+|.++.+.++ .+++.- .+.|.+|.....- ..++.+|...
T Consensus 84 k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~---------------------k~l~~~et~~---- 134 (346)
T KOG2111|consen 84 KERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNP---------------------KLLHVIETRS---- 134 (346)
T ss_pred cCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCCh---------------------hheeeeeccc----
Confidence 667777766 5788999999865 455544 4577777765321 0111222111
Q ss_pred eeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEE-eecCCeEEEEeccccce--
Q psy17863 166 STLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILT-CSTDECLRLFDKATGEL-- 242 (341)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~-- 242 (341)
+|.| .-+++-..+..+|+. |..-|.|++-|+...+.
T Consensus 135 -----------------NPkG------------------------lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~ 173 (346)
T KOG2111|consen 135 -----------------NPKG------------------------LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNA 173 (346)
T ss_pred -----------------CCCc------------------------eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCC
Confidence 1111 000111111122332 34458899999876555
Q ss_pred eeeecCcccceeEEEEEeCCCCCEEEEecCCCc-EEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEE
Q psy17863 243 LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGK-IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVK 320 (341)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~ 320 (341)
...+.+|.+.|.++ +++.+|..+|+++..|+ |||||..+|+++..++.......|.+++|||+..+||+++ -|+++
T Consensus 174 p~~I~AH~s~Iacv--~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlH 251 (346)
T KOG2111|consen 174 PSIINAHDSDIACV--ALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLH 251 (346)
T ss_pred ceEEEcccCceeEE--EEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEE
Confidence 47789999999998 89999999999999998 8999999999999999766778999999999999999999 89999
Q ss_pred EEEcccccCCc
Q psy17863 321 LWTAEEDYGQA 331 (341)
Q Consensus 321 vw~~~~~~~~~ 331 (341)
|+.+.......
T Consensus 252 iF~l~~~~~~~ 262 (346)
T KOG2111|consen 252 IFSLRDTENTE 262 (346)
T ss_pred EEEeecCCCCc
Confidence 99998755433
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=5e-17 Score=124.65 Aligned_cols=231 Identities=13% Similarity=0.156 Sum_probs=162.2
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCC--CcEEEEECCCCcee
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD--KSVILWEVTTGQPV 90 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~ 90 (341)
...+..+.|+.+...|..|+.|| -++|+.+..............|..+-|+ ..++|..+.+ ..+++.++..+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence 45677888999999999999888 6888876655433333344456666666 3455555444 45899999888877
Q ss_pred eeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecC---CCceEEE-eeccCeEEEEEccCCccee
Q psy17863 91 RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDS---KDSQIFC-GSSDGKIYKWQLVDSSQIS 166 (341)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~-~~~~g~i~~~d~~~~~~~~ 166 (341)
..+. ...+|.++.++. ++|+++-.+ .|.|||++..+. +..+... +.+..+- -..++.-..|
T Consensus 82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~Mkl--LhTI~t~~~n~~gl~AlS~n~~n~ylAy--------- 146 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKL--LHTIETTPPNPKGLCALSPNNANCYLAY--------- 146 (391)
T ss_pred EEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEeccccee--ehhhhccCCCccceEeeccCCCCceEEe---------
Confidence 7765 467899999975 356666554 499999998652 1111111 1111111 1111111111
Q ss_pred eeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCe-EEEEecc
Q psy17863 167 TLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDEC-LRLFDKA 238 (341)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~-i~i~d~~ 238 (341)
| .....|.+.+||..+-. |.+++.+++|+++|.+||+++..|+ ||++.+.
T Consensus 147 -----------------p-----~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~ 204 (391)
T KOG2110|consen 147 -----------------P-----GSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP 204 (391)
T ss_pred -----------------c-----CCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcC
Confidence 1 01124778888877633 9999999999999999999999997 8999999
Q ss_pred ccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 239 TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
+|+.+.+|+.....+....++|++++++|++.+..++|++|.++.
T Consensus 205 ~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 205 EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 999999998666666666669999999999999999999998864
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-18 Score=122.79 Aligned_cols=260 Identities=12% Similarity=0.169 Sum_probs=182.0
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCC----------cceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR----------NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
..|.+-+++|.+++|++|..+|.|-+..+.+ ...+...++|.++|+.++|. ..+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3466678999999999999999999998643 12445568999999999998 44677765 49999998
Q ss_pred CCCCce------eeee--ccc-----CccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------cCeEEeec-CC
Q psy17863 84 VTTGQP------VRRW--REH-----ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HPIQCCLD-SK 141 (341)
Q Consensus 84 ~~~~~~------~~~~--~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~-~~ 141 (341)
.+.... +... ..| -..|+++...|..+-++.++.|+.++-||+++++. ..+.+... ..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 764321 1111 112 24688999999777778888999999999998752 23344443 66
Q ss_pred CceEEEeeccCeEEEEEccCCcceeeeEeeecCceEE------EEEECCCCceEEEeCCCceEEEEccccc------CCC
Q psy17863 142 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN------SLCSHPTRKHIMSACGNNVKLWTAEEDY------GQE 209 (341)
Q Consensus 142 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~ 209 (341)
.+.+++|++||++++||.++.+.+..+....++...+ -.+..-+..+++++++..+.+|.++... -..
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa 247 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPA 247 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEeccc
Confidence 7799999999999999999999988876443332211 1445566779999999999999998754 345
Q ss_pred CeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEe
Q psy17863 210 PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 280 (341)
Q Consensus 210 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (341)
++..+.|..+ .+++++..+.+.-|.+. |......+......+...+..+| -+++-.++....+.|+.
T Consensus 248 ~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p-~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 248 RVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSP-IKFISIAGFSNKLHILK 314 (325)
T ss_pred ceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCc-eEEEEecccceeeeeee
Confidence 5666666554 47778878888888875 55544444444444444333444 34555566666666653
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-19 Score=128.77 Aligned_cols=213 Identities=15% Similarity=0.265 Sum_probs=154.6
Q ss_pred cceeEEEEecCCCEEEEecCCCcEEEEECCCC----------ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEE
Q psy17863 56 HEVNDATAACDSSQIASGASDKSVILWEVTTG----------QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125 (341)
Q Consensus 56 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 125 (341)
..|.+-+|+|.+++|++|+.+|.|.+..+.+- ..+...++|.+++..++|. ..+|++++ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 35667789999999999999999999998531 2344557899999999998 34666665 59999998
Q ss_pred ecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccc
Q psy17863 126 VKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED 205 (341)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 205 (341)
.+..... .+.-.+|...........
T Consensus 88 W~E~~es------------------~~~K~lwe~~~P~~~~~~------------------------------------- 112 (325)
T KOG0649|consen 88 WNEEEES------------------LATKRLWEVKIPMQVDAV------------------------------------- 112 (325)
T ss_pred ehhhhhh------------------ccchhhhhhcCccccCcc-------------------------------------
Confidence 7754311 111223332221111000
Q ss_pred cCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCC
Q psy17863 206 YGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS 285 (341)
Q Consensus 206 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (341)
.-..|+++-+.|..+-++.++.|+.++-||+++|+..+++++|+..+.++ +--.....+++|++||++++||.++++
T Consensus 113 -evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~v--v~R~~~~qilsG~EDGtvRvWd~kt~k 189 (325)
T KOG0649|consen 113 -EVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSV--VGRNANGQILSGAEDGTVRVWDTKTQK 189 (325)
T ss_pred -cCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeee--eecccCcceeecCCCccEEEEeccccc
Confidence 12356777777776667777799999999999999999999999988887 443445579999999999999999999
Q ss_pred ceEEEEeeeec--------cceEEEEEcCCCcEEEEeCCCcEEEEEcccccCCc
Q psy17863 286 QISTLIHSVGK--------AVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQA 331 (341)
Q Consensus 286 ~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~~~~~ 331 (341)
.+..+....+. ..|-+++ -+..+|+.|+...+.+|.++..+...
T Consensus 190 ~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrsse~t~ 241 (325)
T KOG0649|consen 190 HVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSSESTC 241 (325)
T ss_pred eeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCCCceE
Confidence 99888743333 2345555 45668888888899999998765443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-17 Score=134.60 Aligned_cols=246 Identities=10% Similarity=0.176 Sum_probs=158.8
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEe-CCCeEEEEcCCC-cce--eeEecCcccceeEEEEecCCCEEEEecC-CCcE
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCG-SDKKIKLWNPYR-NLL--LKTYGGHAHEVNDATAACDSSQIASGAS-DKSV 79 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~-~dg~i~iw~~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i 79 (341)
.+++++ +.+....++++|++++|++++ .++.|.+|++.. ++. ..... .......++|+|+++++++++. ++.|
T Consensus 27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v 104 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCV 104 (330)
T ss_pred eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeE
Confidence 445554 346678899999999887664 478899999863 332 22222 2335678999999999888764 7899
Q ss_pred EEEECCCC-c---eeeeecccCccEEEEEEcCCCcEEEEec-CCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeE
Q psy17863 80 ILWEVTTG-Q---PVRRWREHASKVTCVKFNEDSSVVISGS-QDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 80 ~iw~~~~~-~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 154 (341)
.+|++++. . .+..+. +......++++|+++++++++ .++.|.+||+++... +.
T Consensus 105 ~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~--l~------------------- 162 (330)
T PRK11028 105 SVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH--LV------------------- 162 (330)
T ss_pred EEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc--cc-------------------
Confidence 99999643 2 222222 233457788999998886554 568899998875220 00
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc-----------------CCCCeEEEE
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY-----------------GQEPIVDAC 215 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~-----------------~~~~i~~~~ 215 (341)
.......... .......+.++|+++++++.. ++.+.+|++.... .......+.
T Consensus 163 -------~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~ 234 (330)
T PRK11028 163 -------AQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH 234 (330)
T ss_pred -------ccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence 0000000000 112356789999999987776 4899999987321 001122588
Q ss_pred EccCCCEEEEeec-CCeEEEEeccccceeeeecCccc-ceeEEEEEeCCCCCEEEEecC-CCcEEEEeee
Q psy17863 216 FTRDCQCILTCST-DECLRLFDKATGELLEEYKGHKS-GDFRIECCLDSKDSQIFCGSS-DGKIYKWQLV 282 (341)
Q Consensus 216 ~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 282 (341)
++|++++++++.. ++.|.+|++.......++.++.. ......+.++|+|++|+++.. +++|.+|++.
T Consensus 235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 9999999998865 68899999864432222222211 011123489999999998765 8999999875
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-18 Score=145.49 Aligned_cols=228 Identities=15% Similarity=0.125 Sum_probs=158.3
Q ss_pred CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCC---CcEEEEECCCCce--eeeecccCccEEEEEEcCC
Q psy17863 34 DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD---KSVILWEVTTGQP--VRRWREHASKVTCVKFNED 108 (341)
Q Consensus 34 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~--~~~~~~~~~~v~~~~~~~~ 108 (341)
+..|.+||..... ...+..|...+....|+|||+.|+..+.+ ..|++||+.+++. +..+.++ ...++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4689999976544 55667788889999999999999887643 4699999988754 3333333 346899999
Q ss_pred CcEEEEec-CCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCc
Q psy17863 109 SSVVISGS-QDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 187 (341)
Q Consensus 109 ~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (341)
|+.|+.+. .+|.+.+|.++ +.+++ ...+.. +...+....|+|+++
T Consensus 259 G~~La~~~~~~g~~~Iy~~d-------------------------------~~~~~-~~~lt~--~~~~~~~~~wSpDG~ 304 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMG-------------------------------ANGGT-PSQLTS--GAGNNTEPSWSPDGQ 304 (429)
T ss_pred CCEEEEEEecCCcEEEEEEE-------------------------------CCCCC-eEeecc--CCCCcCCEEECCCCC
Confidence 99888764 56765555432 11111 111111 223466789999999
Q ss_pred eEEEeC--CCceEEEEcccccC------CCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEE
Q psy17863 188 HIMSAC--GNNVKLWTAEEDYG------QEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECC 259 (341)
Q Consensus 188 ~~~~~~--~~~i~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 259 (341)
.++... ++...+|++..... ... ....|+|||+.++..+.++ +.+||+.+++.......+. ... ..
T Consensus 305 ~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~--~~~--~~ 378 (429)
T PRK01742 305 SILFTSDRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFL--DES--PS 378 (429)
T ss_pred EEEEEECCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCC--CCC--ce
Confidence 877654 36778887654321 111 4578999999998887765 5569998876543222221 122 37
Q ss_pred eCCCCCEEEEecCCCcEEEEeee--CCCceEEEEeeeeccceEEEEEcCC
Q psy17863 260 LDSKDSQIFCGSSDGKIYKWQLV--DSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 260 ~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
|+|+|++|+.++.+|...+|++. +++....+. .|.+.+...+|+|-
T Consensus 379 ~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~--~~~g~~~~p~wsp~ 426 (429)
T PRK01742 379 ISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP--GSDGQVKFPAWSPY 426 (429)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc--CCCCCCCCcccCCC
Confidence 99999999999999999888864 577888887 67788899999985
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-18 Score=136.51 Aligned_cols=241 Identities=17% Similarity=0.187 Sum_probs=155.4
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEcCCCcceee------EecCcccceeEEEE-----ecCCCEEEEecCCCcEEEEEC
Q psy17863 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLK------TYGGHAHEVNDATA-----ACDSSQIASGASDKSVILWEV 84 (341)
Q Consensus 16 v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~------~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~iw~~ 84 (341)
++...++-.|++|+-.- ...+.+|+...+..+. .+++ ....|-+| .|.+--++.|-.-|.+.+.|.
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp 202 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP 202 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccC--CCCceecccccccCCCCcceEEeeccCceEEecc
Confidence 33444444566665433 3357888765332211 1221 12233344 345666888888899999987
Q ss_pred CCCceeeeec----ccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEE-eecCCCceEEEeeccCeEEEEE
Q psy17863 85 TTGQPVRRWR----EHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQC-CLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 85 ~~~~~~~~~~----~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~g~i~~~d 158 (341)
...+..+.+. ..+..|+++.|-| +...++.+-.+|.+.++|.+-........ ........+.... |.
T Consensus 203 ~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t-------~k 275 (636)
T KOG2394|consen 203 INFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILT-------SK 275 (636)
T ss_pred hhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEee-------ee
Confidence 6633222221 1357899999998 44566677788999999874321100000 0011111111100 00
Q ss_pred ccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEecc
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 238 (341)
-.. ...++...++ ....|..++|+|||++|++.+.||.+||||..
T Consensus 276 sk~-----------~rNPv~~w~~------------------------~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd 320 (636)
T KOG2394|consen 276 SKK-----------TRNPVARWHI------------------------GEGSINEFAFSPDGKYLATVSQDGFLRIFDFD 320 (636)
T ss_pred ccc-----------cCCccceeEe------------------------ccccccceeEcCCCceEEEEecCceEEEeecc
Confidence 000 0011111111 14578899999999999999999999999999
Q ss_pred ccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEc
Q psy17863 239 TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH 305 (341)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 305 (341)
+.+++..++..-+...++ +|+|||+||++|++|--|.||.+...+.+..-. +|+..|+.++|.
T Consensus 321 t~eLlg~mkSYFGGLLCv--cWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq--GHkSWVs~VaFD 383 (636)
T KOG2394|consen 321 TQELLGVMKSYFGGLLCV--CWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ--GHKSWVSVVAFD 383 (636)
T ss_pred HHHHHHHHHhhccceEEE--EEcCCccEEEecCCcceEEEEEeccceEEEecc--ccccceeeEeec
Confidence 998888877776776666 999999999999999999999999999988888 999999999998
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-19 Score=141.33 Aligned_cols=186 Identities=20% Similarity=0.310 Sum_probs=145.8
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECC
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 85 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 85 (341)
.+.+.+|.+.|.+-.|+|||.-|+|++.||.|++|. .+|-+..++.....+|.|++|.|+.+.++-+.. +.+.|=.+.
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~ 174 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLA 174 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecc
Confidence 345678999999999999999999999999999999 466666666667889999999998887776554 557777777
Q ss_pred CCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcce
Q psy17863 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
....+-.++.|.+-|.++.|++.++.+++|++|-..++||-....
T Consensus 175 ~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~----------------------------------- 219 (737)
T KOG1524|consen 175 ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN----------------------------------- 219 (737)
T ss_pred cccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc-----------------------------------
Confidence 777778889999999999999999999999999999999965432
Q ss_pred eeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEE
Q psy17863 166 STLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRL 234 (341)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 234 (341)
.+....+..++++++|+|+ +.++.++-+.+++= ....+.|..++||+||..+++|+..|.+.+
T Consensus 220 -Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~----~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 220 -LFTSAAEEYAITSVAFNPE-KDYLLWSYNTARFS----SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred -cccCChhccceeeeeeccc-cceeeeeeeeeeec----CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 0111224556888888888 66666666666622 223567888888888888888887776554
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-17 Score=123.58 Aligned_cols=237 Identities=19% Similarity=0.282 Sum_probs=170.2
Q ss_pred EEeeeCCcEEEEEEccC-CCEEEEEeCC-------CeEEEEcCCCc---------ceeeEec-CcccceeEEEEecCCCE
Q psy17863 8 TIDCKQGAIRAVRFNVD-GSYCLTCGSD-------KKIKLWNPYRN---------LLLKTYG-GHAHEVNDATAACDSSQ 69 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~-~~~l~t~~~d-------g~i~iw~~~~~---------~~~~~~~-~~~~~v~~~~~~~~~~~ 69 (341)
.|..|.+.|..++-+|- .+.|+|+..+ ..+-||.+... +++..+. .+-+.|.|+.|.|++..
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 46668899999999995 5566665442 35789986543 3344443 45568999999999999
Q ss_pred EEEecCCCcEEEEECCCCce-eeeec-----ccCccEEEEEEcC--CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCC
Q psy17863 70 IASGASDKSVILWEVTTGQP-VRRWR-----EHASKVTCVKFNE--DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSK 141 (341)
Q Consensus 70 l~~~~~dg~i~iw~~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 141 (341)
+++-. |..|.+|+++.+.. +..+. .+....++-+|+| +++.+++.+ |+++..||+++.+
T Consensus 138 lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~----------- 204 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMK----------- 204 (370)
T ss_pred eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchh-----------
Confidence 88876 78899999988765 33332 2456677888988 777777654 6777777777543
Q ss_pred CceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc--------CCCCe
Q psy17863 142 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY--------GQEPI 211 (341)
Q Consensus 142 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~--------~~~~i 211 (341)
+...+.. .+...+..+.++|+.+.+++.+ ++.+++||.+... |...+
T Consensus 205 ----------------------~~~sI~d-AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWv 261 (370)
T KOG1007|consen 205 ----------------------KNNSIED-AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWV 261 (370)
T ss_pred ----------------------hhcchhh-hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEE
Confidence 2212211 1345689999999988776655 3899999998754 77789
Q ss_pred EEEEEccC-CCEEEEeecCCeEEEEeccc-----------------------------cceeeeecCcccceeEEEEEeC
Q psy17863 212 VDACFTRD-CQCILTCSTDECLRLFDKAT-----------------------------GELLEEYKGHKSGDFRIECCLD 261 (341)
Q Consensus 212 ~~~~~~~~-~~~l~~~~~d~~i~i~d~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 261 (341)
.++.|+|. .+++++|+.|..|.+|.... ...+.++..|...|+++ +|+
T Consensus 262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~--aWS 339 (370)
T KOG1007|consen 262 WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYAL--AWS 339 (370)
T ss_pred EEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEE--eec
Confidence 99999996 56778999999999996431 11245677788999888 677
Q ss_pred CCCCE-EEEecCCCcEEEEeee
Q psy17863 262 SKDSQ-IFCGSSDGKIYKWQLV 282 (341)
Q Consensus 262 ~~~~~-l~~~~~dg~i~iwd~~ 282 (341)
.-..+ +|+-+.||.+.|=.+.
T Consensus 340 sadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 340 SADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cCCCeeEEEeccCceEEeecCC
Confidence 65555 6677999999886653
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-17 Score=142.58 Aligned_cols=236 Identities=20% Similarity=0.257 Sum_probs=167.3
Q ss_pred CceeeeEEeeeCCcEEEEEEccCC-CEEEEEeCCCeEEEEcCCCc-------ceeeEecCcccceeEEEEecCCCEEEEe
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDG-SYCLTCGSDKKIKLWNPYRN-------LLLKTYGGHAHEVNDATAACDSSQIASG 73 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 73 (341)
....+..|..|...|..++.+++. .+++||+.||+|++||.... +...++.-...++.++...+.++.+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 356778889999999999988755 99999999999999996532 1222333356789999999999999999
Q ss_pred cCCCcEEEEECCCCc-------eeeeeccc--CccEEEEEEcC-CC-cEEEEecCCCeEEEEEecCCC----------Cc
Q psy17863 74 ASDKSVILWEVTTGQ-------PVRRWREH--ASKVTCVKFNE-DS-SVVISGSQDNTVMMWDVKSRS----------HH 132 (341)
Q Consensus 74 ~~dg~i~iw~~~~~~-------~~~~~~~~--~~~v~~~~~~~-~~-~~l~~~~~d~~i~iwd~~~~~----------~~ 132 (341)
+.||.|++.+++..+ +.+....+ ...|..-+|.. .+ ..++.+...+.|..||++... +.
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 999999999987621 11222222 22233334433 23 378888888999999988643 23
Q ss_pred Ce-EEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCc---eEEEeC---CCceEEEEcccc
Q psy17863 133 PI-QCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK---HIMSAC---GNNVKLWTAEED 205 (341)
Q Consensus 133 ~~-~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~i~~~~~~~~ 205 (341)
.+ ..+..+..+.++.|+..|.+.+||++-..++........ .++..+..+|-.+ ..++++ .+.+.+|++.++
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 33 345566677999999999999999998888877765543 6788888777544 444433 378999998875
Q ss_pred cC--------------------------CCCeEEEEEccCCCEEEEeecCCeEEEEecc
Q psy17863 206 YG--------------------------QEPIVDACFTRDCQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 206 ~~--------------------------~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 238 (341)
.. ........+...+.++++|+.|..|+.||..
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 41 0111223333445678999999999999964
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.4e-18 Score=141.65 Aligned_cols=215 Identities=13% Similarity=0.122 Sum_probs=149.8
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCC---CeEEEEcCCCcce--eeEecCcccceeEEEEecCCCEEEEec-CCCcE
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSD---KKIKLWNPYRNLL--LKTYGGHAHEVNDATAACDSSQIASGA-SDKSV 79 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~d---g~i~iw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i 79 (341)
.+.+..|...+.+.+|+|||+.|+.++.+ ..|++||+.+++. +..+.+| ...++|+|||+.|+.+. .+|.+
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~ 272 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVL 272 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcE
Confidence 45667788899999999999999987653 4799999987753 3333333 44689999999888764 67766
Q ss_pred EEE--ECCCCceeeeecccCccEEEEEEcCCCcEEEEec-CCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEE
Q psy17863 80 ILW--EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS-QDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYK 156 (341)
Q Consensus 80 ~iw--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 156 (341)
.|| |+.+++ ...+..+...+....|+|||+.|+.++ .+|...+|+++.....
T Consensus 273 ~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~------------------------ 327 (429)
T PRK01742 273 NIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG------------------------ 327 (429)
T ss_pred EEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC------------------------
Confidence 555 665554 445556777788999999999776554 5677778776532200
Q ss_pred EEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc-----CCCCeEEEEEccCCCEEEEeecCCe
Q psy17863 157 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY-----GQEPIVDACFTRDCQCILTCSTDEC 231 (341)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~ 231 (341)
...+ . ... ....|+|+++.++......+..||+.+.. .......+.|+|+|+.|+.++.++.
T Consensus 328 --------~~~l-~--~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~ 394 (429)
T PRK01742 328 --------ASLV-G--GRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGL 394 (429)
T ss_pred --------eEEe-c--CCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCC
Confidence 0000 0 111 23568888888877776667778876542 1123356789999999999999998
Q ss_pred EEEEec--cccceeeeecCcccceeEEEEEeCCC
Q psy17863 232 LRLFDK--ATGELLEEYKGHKSGDFRIECCLDSK 263 (341)
Q Consensus 232 i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (341)
..+|++ .+++..+.+..|.+.+... +|+|-
T Consensus 395 ~~~l~~~~~~G~~~~~l~~~~g~~~~p--~wsp~ 426 (429)
T PRK01742 395 GKVLQLVSADGRFKARLPGSDGQVKFP--AWSPY 426 (429)
T ss_pred ceEEEEEECCCCceEEccCCCCCCCCc--ccCCC
Confidence 888875 3577788888777766655 67763
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.3e-19 Score=139.69 Aligned_cols=231 Identities=15% Similarity=0.187 Sum_probs=186.5
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeec
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 94 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 94 (341)
.-..+.|+.+|+.|+.|+..|.|-.+|+.++++..++. -...|.++.|..+.+++|++-. ..+.||| ..|..+..++
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK-~y~yvYD-~~GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQK-KYVYVYD-NNGTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhhh-ceEEEec-CCCcEEeehh
Confidence 34578899999999999999999999999999998887 4567999999888888877654 6699999 5788888888
Q ss_pred ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecC
Q psy17863 95 EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK 174 (341)
Q Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 174 (341)
.| ..|..+.|.|..-+|++++..|.++.-|+..++ .+..+..
T Consensus 208 ~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk---------------------------------lVa~~~t---- 249 (545)
T KOG1272|consen 208 RH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK---------------------------------LVASIRT---- 249 (545)
T ss_pred hc-CchhhhcccchhheeeecccCCceEEEeechhh---------------------------------hhHHHHc----
Confidence 65 568999999999899999999988888887655 1111111
Q ss_pred ceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCccccee
Q psy17863 175 AVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDF 254 (341)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 254 (341)
..+.+..++-+|-...+-+|..+|+|.+|.....+++..+..|.+++.
T Consensus 250 --------------------------------~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~ 297 (545)
T KOG1272|consen 250 --------------------------------GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVS 297 (545)
T ss_pred --------------------------------cCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcc
Confidence 123344445555556688899999999999999999999999999999
Q ss_pred EEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEc
Q psy17863 255 RIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTA 324 (341)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~ 324 (341)
.+ ++.++|+|+++.+.|..++|||++....+.++. . ..+...+++|..| .||.+-...|.||.=
T Consensus 298 si--Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~--t-p~~a~~ls~Sqkg-lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 298 SI--AVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR--T-PHPASNLSLSQKG-LLALSYGDHVQIWKD 361 (545)
T ss_pred eE--EECCCCcEEeecccccceeEeeeccccccceee--c-CCCcccccccccc-ceeeecCCeeeeehh
Confidence 99 899999999999999999999999988877776 2 4567888888765 344444778999963
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-16 Score=120.31 Aligned_cols=293 Identities=15% Similarity=0.220 Sum_probs=189.7
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec-CcccceeEEEEecC-CCEEEEecCCCcEEEEECCCC----
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-GHAHEVNDATAACD-SSQIASGASDKSVILWEVTTG---- 87 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~---- 87 (341)
-.+..++|++.-..+|++..|-.|++|+-.. +....++ .....|+|++|-|. +..|+.|+..| |.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 4577899999877889999999999999766 5455554 34567999999995 45677777766 999986531
Q ss_pred ce----------eeeecccCccEEEEEEcCCCcEEEEecC-CCeEEEEEecCCCCcCeE--------Ee-ecCCCceEEE
Q psy17863 88 QP----------VRRWREHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQ--------CC-LDSKDSQIFC 147 (341)
Q Consensus 88 ~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~--------~~-~~~~~~~~~~ 147 (341)
+. +...++| .+|++++|++||..+++++. |..|.+||..++...++. .+ ..++++.+++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 11 1122344 68999999999999999875 578999999987754443 33 4455669999
Q ss_pred eeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEE-Ee
Q psy17863 148 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCIL-TC 226 (341)
Q Consensus 148 ~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~ 226 (341)
++-|+..++|+............ ....+...+|+|.|.+++....+.-++|. +.|......+. .+
T Consensus 256 At~davfrlw~e~q~wt~erw~l--gsgrvqtacWspcGsfLLf~~sgsp~lys------------l~f~~~~~~~~~~~ 321 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWIL--GSGRVQTACWSPCGSFLLFACSGSPRLYS------------LTFDGEDSVFLRPQ 321 (445)
T ss_pred ecccceeeeehhcccceecceec--cCCceeeeeecCCCCEEEEEEcCCceEEE------------EeecCCCccccCcc
Confidence 99999999996554433322222 33478999999999998887766555544 34433222221 33
Q ss_pred ecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCC--------CcEEEEeeeCCCceEEEE-eeeecc
Q psy17863 227 STDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD--------GKIYKWQLVDSSQISTLI-HSVGKA 297 (341)
Q Consensus 227 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~-~~~~~~ 297 (341)
+....+-+-|+..-....--+--.++..++ +++|.|.+||+.-.. +.|.+||.+..-.+.... ......
T Consensus 322 ~~k~~lliaDL~e~ti~ag~~l~cgeaq~l--awDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge 399 (445)
T KOG2139|consen 322 SIKRVLLIADLQEVTICAGQRLCCGEAQCL--AWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGE 399 (445)
T ss_pred cceeeeeeccchhhhhhcCcccccCcccee--eECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCC
Confidence 333344444543211111101112445566 899999999986543 347778876554443332 001122
Q ss_pred ceEEEEEcC---CCcEEEEeC-CCcEEEEEcc
Q psy17863 298 VVNSLCSHP---TRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 298 ~v~~~~~~~---~~~~l~~~~-d~~i~vw~~~ 325 (341)
....++|+| ++.+|..+- .|.+.-|.+.
T Consensus 400 ~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 400 YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 244556665 466776666 8888887764
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.7e-17 Score=135.32 Aligned_cols=243 Identities=16% Similarity=0.210 Sum_probs=170.2
Q ss_pred eCCcEEEEEEcc-CCCEEEEEeCCCeEEEEcCCCcce--eeEe----cCcccceeEEEEecCC--CEEEEecCCCcEEEE
Q psy17863 12 KQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRNLL--LKTY----GGHAHEVNDATAACDS--SQIASGASDKSVILW 82 (341)
Q Consensus 12 h~~~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~~~~--~~~~----~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iw 82 (341)
-..+|+|+.|+| +..++|.|..+|+|.+||+..+.. ...+ ..|..+++.+.|..+. .-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 457899999999 566788888999999999887654 2222 3688999999997654 449999999999999
Q ss_pred ECCCCce------eeeec------ccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEee
Q psy17863 83 EVTTGQP------VRRWR------EHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGS 149 (341)
Q Consensus 83 ~~~~~~~------~~~~~------~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 149 (341)
+++.-.. ..... .....+++++|.+ +...++.|+.+|.|.--+-........
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~--------------- 385 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE--------------- 385 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc---------------
Confidence 8764322 11111 1234688999988 667889999999876633332221110
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCc-eEEEeCCCceEEEEcc-ccc-------CCCCeEEEEEccCC
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK-HIMSACGNNVKLWTAE-EDY-------GQEPIVDACFTRDC 220 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~-~~~-------~~~~i~~~~~~~~~ 220 (341)
.++ +.... ...+...++.+.++|-+. .++++++..+++|... ... +...+++++|||-.
T Consensus 386 -----~~~-----~~~~~--~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptr 453 (555)
T KOG1587|consen 386 -----VSY-----KGHST--FITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTR 453 (555)
T ss_pred -----ccc-----ccccc--ccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcC
Confidence 000 11111 122556799999999764 5566668999999987 322 45669999999965
Q ss_pred -CEEEEeecCCeEEEEecccc--ceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 221 -QCILTCSTDECLRLFDKATG--ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 221 -~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
..++++..||.+.+||+... .++.+...+......+ .++++|+.|++|...|.+.+|++..
T Consensus 454 pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~--~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 454 PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRV--RWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ceEEEEEcCCCceehhhhhccccCCccccccccccccee--ecCCCCcEEEEecCCCcEEEEEcCc
Confidence 56778888999999998654 3444444443333333 6778899999999999999999854
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.8e-17 Score=140.46 Aligned_cols=245 Identities=15% Similarity=0.254 Sum_probs=171.0
Q ss_pred ceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeeccc---CccEEEEEEcC--CCcEEEEecCCCeEEEEEecCCC-
Q psy17863 57 EVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREH---ASKVTCVKFNE--DSSVVISGSQDNTVMMWDVKSRS- 130 (341)
Q Consensus 57 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~- 130 (341)
+-..+.|+|-...++++...-.|++||.+.++.+..|..+ ...|+.+.+-. |..++++++.||.|+||+--...
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 4566788888888999887888999999999998877643 45688888865 66789999999999999854332
Q ss_pred -CcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccccc--
Q psy17863 131 -HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY-- 206 (341)
Q Consensus 131 -~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~-- 206 (341)
...+.....+-.+.+.....- -.-+.|.....+++++++ ..|++||...+.
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~-------------------------~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~ 1200 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGT-------------------------GLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVV 1200 (1387)
T ss_pred CCceeEEeeccccccCccCCCC-------------------------CeeeehhhhCCeEEecCCeeEEEEEecccceeE
Confidence 111111111111111111111 133455555556666665 899999998865
Q ss_pred ------CCCCeEEEEEc-cCCCEEEEeecCCeEEEEeccccc---eeeeecCcccc--eeEEEEEeCCCCC-EEEEecCC
Q psy17863 207 ------GQEPIVDACFT-RDCQCILTCSTDECLRLFDKATGE---LLEEYKGHKSG--DFRIECCLDSKDS-QIFCGSSD 273 (341)
Q Consensus 207 ------~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~-~l~~~~~d 273 (341)
....++++.-+ +.|+.+++|..||.|++||.+... .+...+.|... |..+ .+.++|- .|++|+.|
T Consensus 1201 ~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~--slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1201 ADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHL--SLQRQGLGELVSGSQD 1278 (1387)
T ss_pred eecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeE--EeecCCCcceeeeccC
Confidence 33445555433 247999999999999999987543 46677888877 5555 5666554 59999999
Q ss_pred CcEEEEeeeCCCceEEEEeeee---ccceEEEEEcCCCcEEEEeCCCcEEEEEccccc
Q psy17863 274 GKIYKWQLVDSSQISTLIHSVG---KAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 328 (341)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~~ 328 (341)
|.|++||++.......+....| .+..+++..+++...+|+|+.+.|+||++..+.
T Consensus 1279 G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1279 GDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQ 1336 (1387)
T ss_pred CeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhh
Confidence 9999999987533333321122 235999999999999999998999999998754
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-17 Score=125.80 Aligned_cols=248 Identities=15% Similarity=0.218 Sum_probs=168.6
Q ss_pred eEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC------Cceeeeec-ccCccEEEEEEcCCCcEEEEecCCCeE
Q psy17863 49 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT------GQPVRRWR-EHASKVTCVKFNEDSSVVISGSQDNTV 121 (341)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i 121 (341)
+-+.+|.+.|+++.|+.++++|++|+.|..+++|+++. .+++.... .|.+.|.|++|...+..+++|+.+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 34568999999999999999999999999999999863 35555443 366899999999999999999999999
Q ss_pred EEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEE
Q psy17863 122 MMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLW 200 (341)
Q Consensus 122 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~ 200 (341)
...|+++.+. |.++. .....+.|+.+..+|..+.+++.++ +.+.+|
T Consensus 130 I~HDiEt~qs----------------------i~V~~-----------~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~ 176 (609)
T KOG4227|consen 130 IKHDIETKQS----------------------IYVAN-----------ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFI 176 (609)
T ss_pred Eeeeccccee----------------------eeeec-----------ccCcccceeecccCCCCceEEEEecCceEEEE
Confidence 9999987651 22211 1112334666666665555554443 566666
Q ss_pred Eccccc----------CCCCeEEEEEccC-CCEEEEeecCCeEEEEeccccce-eeee---cCccc-ceeEEEEEeCCCC
Q psy17863 201 TAEEDY----------GQEPIVDACFTRD-CQCILTCSTDECLRLFDKATGEL-LEEY---KGHKS-GDFRIECCLDSKD 264 (341)
Q Consensus 201 ~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~-~~~~---~~~~~-~~~~~~~~~~~~~ 264 (341)
|.+... .......+.|+|. ..+|++.+..+-+-+||.+..+. +... .+... ....+...|+|+|
T Consensus 177 D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G 256 (609)
T KOG4227|consen 177 DNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG 256 (609)
T ss_pred eccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC
Confidence 665544 2234566778885 45677888888899999875432 2111 11111 1112334799999
Q ss_pred CEEEEecCCCcEEEEeeeCCCce-EEEEee----eeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 265 SQIFCGSSDGKIYKWQLVDSSQI-STLIHS----VGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 265 ~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~----~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
+.+.+--....-.+||+.+.++. .++.+. -....+.+++|..|.. +++|+ +=.|++|.+......
T Consensus 257 ~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds 327 (609)
T KOG4227|consen 257 NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDS 327 (609)
T ss_pred CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccc
Confidence 99888776667778888775442 233210 1124678888876654 88999 888999999865433
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.9e-15 Score=120.43 Aligned_cols=284 Identities=10% Similarity=0.107 Sum_probs=174.9
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEec-CCCcEEEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA-SDKSVILW 82 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw 82 (341)
+.+.++......-..+.|+|||+++++++.||.|.++|+.+++.+.+++... ....+++++||++++++. ..+.+.++
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~ 105 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVI 105 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEe
Confidence 5667777655554567899999999999999999999999999999998544 467899999999998775 58999999
Q ss_pred ECCCCceeeeeccc-------CccEEEEEEcCCCcEEE-EecCCCeEEEEEecCCCCc----------CeEEeecCCCce
Q psy17863 83 EVTTGQPVRRWREH-------ASKVTCVKFNEDSSVVI-SGSQDNTVMMWDVKSRSHH----------PIQCCLDSKDSQ 144 (341)
Q Consensus 83 ~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~----------~~~~~~~~~~~~ 144 (341)
|.++.+.++.+... ...+..+..+|....++ +.-..+.|.+.|....+.. +......+.+.+
T Consensus 106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry 185 (369)
T PF02239_consen 106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY 185 (369)
T ss_dssp ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred ccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence 99999998877532 34677888888777554 4455588888887665321 112233344455
Q ss_pred EEE-eeccCeEEEEEccCCcceeeeEeee--cCceEEEEEECCCC-ceEEEeC----------CCceEEEEccccc----
Q psy17863 145 IFC-GSSDGKIYKWQLVDSSQISTLIHSV--GKAVVNSLCSHPTR-KHIMSAC----------GNNVKLWTAEEDY---- 206 (341)
Q Consensus 145 ~~~-~~~~g~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~----------~~~i~~~~~~~~~---- 206 (341)
+++ ...++.+.++|..+.+....+.... +......+ .+|.. ....... .+.+.+|+...-.
T Consensus 186 ~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~ 264 (369)
T PF02239_consen 186 FLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKT 264 (369)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEE
T ss_pred eeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEE
Confidence 544 5667899999999887766543211 11122222 23332 1122221 1222233322211
Q ss_pred ---CCCCeEEEEEccCCCEEEEe----ecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecC--CCcEE
Q psy17863 207 ---GQEPIVDACFTRDCQCILTC----STDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS--DGKIY 277 (341)
Q Consensus 207 ---~~~~i~~~~~~~~~~~l~~~----~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~ 277 (341)
...+ .-+..+|+++++.+. ...+.|.++|.++.+.+..+..... ...+.+.|+++|+++..+.. ++.|.
T Consensus 265 I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~-~~~~h~ef~~dG~~v~vS~~~~~~~i~ 342 (369)
T PF02239_consen 265 IPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPG-KRVVHMEFNPDGKEVWVSVWDGNGAIV 342 (369)
T ss_dssp EE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT---EEEEEE-TTSSEEEEEEE--TTEEE
T ss_pred EECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCC-CcEeccEECCCCCEEEEEEecCCCEEE
Confidence 2333 677889999999987 4457899999999887777753222 11344589999998766544 34699
Q ss_pred EEeeeCCCceEEEE
Q psy17863 278 KWQLVDSSQISTLI 291 (341)
Q Consensus 278 iwd~~~~~~~~~~~ 291 (341)
+||..+.+.+..++
T Consensus 343 v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 343 VYDAKTLKEKKRIP 356 (369)
T ss_dssp EEETTTTEEEEEEE
T ss_pred EEECCCcEEEEEEE
Confidence 99999998888876
|
... |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.6e-16 Score=130.61 Aligned_cols=224 Identities=13% Similarity=0.102 Sum_probs=143.6
Q ss_pred eEEeeeCCcEEEEEEccCCCEEEEEeC---CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEe-cCCC--cEE
Q psy17863 7 QTIDCKQGAIRAVRFNVDGSYCLTCGS---DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG-ASDK--SVI 80 (341)
Q Consensus 7 ~~l~~h~~~v~~~~~~~~~~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~ 80 (341)
+.+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++... +....+.+....|+|||+.|+.. +.+| .|.
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 445556778999999999999986542 4579999998775432 22233445578999999988764 4444 588
Q ss_pred EEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCC-CeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEc
Q psy17863 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD-NTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQL 159 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~ 159 (341)
+||+++++..+. ..+...+....|+|||+.|+..+.+ +...+|.+ |+
T Consensus 271 ~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~-------------------------------d~ 318 (429)
T PRK03629 271 VMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKV-------------------------------NI 318 (429)
T ss_pred EEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEE-------------------------------EC
Confidence 999988766443 3344567889999999988766643 33333322 22
Q ss_pred cCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecC---CeEEEEe
Q psy17863 160 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTD---ECLRLFD 236 (341)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d 236 (341)
.+++. ..+.. . ........|+|||++++..+.+ ..|.+||
T Consensus 319 ~~g~~-~~lt~--~----------------------------------~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~d 361 (429)
T PRK03629 319 NGGAP-QRITW--E----------------------------------GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQD 361 (429)
T ss_pred CCCCe-EEeec--C----------------------------------CCCccCEEECCCCCEEEEEEccCCCceEEEEE
Confidence 22111 11100 0 1112345567777766654433 3588899
Q ss_pred ccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCc---EEEEeeeCCCceEEEEeeeeccceEEEEEcCC
Q psy17863 237 KATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGK---IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
+.+++.. .+.... ... ...|+|||++|+.++.++. +.++++ +++....+. .+.+.+...+|+|-
T Consensus 362 l~~g~~~-~Lt~~~-~~~--~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~--~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 362 LATGGVQ-VLTDTF-LDE--TPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLP--ATDGQVKFPAWSPY 428 (429)
T ss_pred CCCCCeE-EeCCCC-CCC--CceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECc--cCCCCcCCcccCCC
Confidence 8877643 333211 112 2379999999998887764 666675 566777777 67788899999873
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-16 Score=122.56 Aligned_cols=247 Identities=15% Similarity=0.226 Sum_probs=173.2
Q ss_pred CCcEEEEEEccCCC--EEEEEeCCCeEEEEcCCCcceeeEe------cCcccceeEEEEecCCCEEEEecCCCcEEEEEC
Q psy17863 13 QGAIRAVRFNVDGS--YCLTCGSDKKIKLWNPYRNLLLKTY------GGHAHEVNDATAACDSSQIASGASDKSVILWEV 84 (341)
Q Consensus 13 ~~~v~~~~~~~~~~--~l~t~~~dg~i~iw~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 84 (341)
...|+.++|..+++ .+...+.+..+..+.+........+ .....+|..++.. +..|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 45677888876553 4555546667777776665544432 3345566666654 346888888999999998
Q ss_pred CCCc----eeeeecccCccEEEEEEcCCC-cEEEEecCC--CeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 85 TTGQ----PVRRWREHASKVTCVKFNEDS-SVVISGSQD--NTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 85 ~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
..+. .+..+..+ ..+..+.-++.. ..+++|+.. ..+++||++..+ .+|
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~------------------------qiw 187 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK------------------------QIW 187 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccce------------------------eee
Confidence 7543 22233322 345555555533 345557777 677788777542 233
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC--CCEEEEeecCCeEEEE
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD--CQCILTCSTDECLRLF 235 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~ 235 (341)
...+... ..+ +=.+. -.++.+.|-+. ...|++++.-+.+++|
T Consensus 188 ~aKNvpn---------------------D~L-----~LrVP----------vW~tdi~Fl~g~~~~~fat~T~~hqvR~Y 231 (412)
T KOG3881|consen 188 SAKNVPN---------------------DRL-----GLRVP----------VWITDIRFLEGSPNYKFATITRYHQVRLY 231 (412)
T ss_pred eccCCCC---------------------ccc-----cceee----------eeeccceecCCCCCceEEEEecceeEEEe
Confidence 2221110 000 00111 23455667766 7789999999999999
Q ss_pred ecccc-ceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEE-EEeeeeccceEEEEEcCCCcEEEE
Q psy17863 236 DKATG-ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST-LIHSVGKAVVNSLCSHPTRKHIMS 313 (341)
Q Consensus 236 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~ 313 (341)
|.+.+ +++..+.....++.++ ...|.++++++|..-|.+..||++.++.+.. +. +..+.|+++..+|.+++||+
T Consensus 232 Dt~~qRRPV~~fd~~E~~is~~--~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~k--g~tGsirsih~hp~~~~las 307 (412)
T KOG3881|consen 232 DTRHQRRPVAQFDFLENPISST--GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLK--GITGSIRSIHCHPTHPVLAS 307 (412)
T ss_pred cCcccCcceeEeccccCcceee--eecCCCcEEEEecccchhheecccCceeeccccC--CccCCcceEEEcCCCceEEe
Confidence 98866 5788888888888888 7889999999999999999999999988776 55 77899999999999999999
Q ss_pred eC-CCcEEEEEccc
Q psy17863 314 AC-GNNVKLWTAEE 326 (341)
Q Consensus 314 ~~-d~~i~vw~~~~ 326 (341)
++ |..+||+|+.+
T Consensus 308 ~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 308 CGLDRYVRIHDIKT 321 (412)
T ss_pred eccceeEEEeeccc
Confidence 99 99999999988
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.6e-16 Score=115.77 Aligned_cols=246 Identities=18% Similarity=0.255 Sum_probs=165.3
Q ss_pred CcEEEEEEcc--C-CCEEEEEeC----CCeEEEEcC--CCcceeeEe-cCcccceeEEEEecCCC-----EEEEecCCCc
Q psy17863 14 GAIRAVRFNV--D-GSYCLTCGS----DKKIKLWNP--YRNLLLKTY-GGHAHEVNDATAACDSS-----QIASGASDKS 78 (341)
Q Consensus 14 ~~v~~~~~~~--~-~~~l~t~~~----dg~i~iw~~--~~~~~~~~~-~~~~~~v~~~~~~~~~~-----~l~~~~~dg~ 78 (341)
-++.++.|+. + +.+||.|+. .+.|.|-.+ ++++.+..- -.|.-+++.+.|.|+.. +||++ . -.
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs-~-D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS-S-DF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc-c-Ce
Confidence 3577888883 2 447888874 455666543 344433322 25889999999999763 45544 3 35
Q ss_pred EEEEECCCCc--e--eeee-----cccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEe
Q psy17863 79 VILWEVTTGQ--P--VRRW-----REHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCG 148 (341)
Q Consensus 79 i~iw~~~~~~--~--~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 148 (341)
+++|.+...+ . ...+ ..+..++++..|+. +.+++.+.+-|-+..+||++++..
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~----------------- 185 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS----------------- 185 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-----------------
Confidence 9999987421 1 1111 23667899999987 788999999999999999987521
Q ss_pred eccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCC-CEEEEee
Q psy17863 149 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDC-QCILTCS 227 (341)
Q Consensus 149 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~ 227 (341)
|++ ...+.. |..+|..++|...+ +.+++.+
T Consensus 186 ---~~v----------kTQLIA------------------------------------HDKEV~DIaf~~~s~~~FASvg 216 (364)
T KOG0290|consen 186 ---GTV----------KTQLIA------------------------------------HDKEVYDIAFLKGSRDVFASVG 216 (364)
T ss_pred ---cce----------eeEEEe------------------------------------cCcceeEEEeccCccceEEEec
Confidence 111 011111 24455666666543 4588999
Q ss_pred cCCeEEEEeccccceeeee-cCcccceeEEEEEeCCCC-CEEEEecCC-CcEEEEeeeCC-CceEEEEeeeeccceEEEE
Q psy17863 228 TDECLRLFDKATGELLEEY-KGHKSGDFRIECCLDSKD-SQIFCGSSD-GKIYKWQLVDS-SQISTLIHSVGKAVVNSLC 303 (341)
Q Consensus 228 ~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~l~~~~~d-g~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~ 303 (341)
.||.+|+||++..+.-..+ +.....-.-++.+++++. +++|+-..| ..|.|.|++.. .++..+. .|.+.|+.++
T Consensus 217 aDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~--~H~a~VNgIa 294 (364)
T KOG0290|consen 217 ADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLR--NHQASVNGIA 294 (364)
T ss_pred CCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhh--cCcccccceE
Confidence 9999999999876543332 222212223444776644 567765544 56999999875 5677788 8999999999
Q ss_pred EcCCC-cEEEEeC-CCcEEEEEcccccC
Q psy17863 304 SHPTR-KHIMSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 304 ~~~~~-~~l~~~~-d~~i~vw~~~~~~~ 329 (341)
|.|.. ..|++++ |..+.+||+.....
T Consensus 295 WaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 295 WAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred ecCCCCceeeecCCcceEEEEecccccc
Confidence 99975 5888888 99999999987655
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.4e-15 Score=118.24 Aligned_cols=302 Identities=12% Similarity=0.153 Sum_probs=202.1
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEe-----cC-----CCcEEEE
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG-----AS-----DKSVILW 82 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~-----dg~i~iw 82 (341)
..+++..+++++|+++|.+. +..++|++..++..+.+... ..++++.|+|-+.+|.+- .. .-.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 34577889999999888765 67899999888864444332 278999999999988752 11 2447799
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC-------cCeEEeecCCC---ceEEE-----
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH-------HPIQCCLDSKD---SQIFC----- 147 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~---~~~~~----- 147 (341)
+++++.....+......-++..|++|..+.+ --..+.+.+|++...+. ..+..+..+++ ..+++
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCC
Confidence 9999666555544333336889998775433 33456899999877431 22233333333 12222
Q ss_pred eeccCeEEEEEccCCcceeeeEe-eecCceEEEEEECCCCceEEEe--C-----------CCceEEEEccccc------C
Q psy17863 148 GSSDGKIYKWQLVDSSQISTLIH-SVGKAVVNSLCSHPTRKHIMSA--C-----------GNNVKLWTAEEDY------G 207 (341)
Q Consensus 148 ~~~~g~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~i~~~~~~~~~------~ 207 (341)
.+.-+.+++|.......-..... ..-...-..+.|++.+.-|++- + ..+++++++.... .
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k 269 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK 269 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC
Confidence 34445788887763322221110 0012224567788777654432 1 1357777777432 6
Q ss_pred CCCeEEEEEccCCCEEEE--eecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecC---CCcEEEEeee
Q psy17863 208 QEPIVDACFTRDCQCILT--CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS---DGKIYKWQLV 282 (341)
Q Consensus 208 ~~~i~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~ 282 (341)
.++|.++.|+|+++-+++ |-.-..+.+||++ +.++..+. .++-..+ -|+|.|++++.++- .|.+-|||+.
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~--~fnp~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTA--FFNPHGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccce--EECCCCCEEEEeecCCCCCceEEEecc
Confidence 899999999999976654 5567789999987 66666553 3333444 79999999887764 5899999999
Q ss_pred CCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-------CCcEEEEEcccc
Q psy17863 283 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-------GNNVKLWTAEED 327 (341)
Q Consensus 283 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------d~~i~vw~~~~~ 327 (341)
+.+++..+. . ..-+-+.|+|||++++|++ |+.++||+..+.
T Consensus 345 n~K~i~~~~--a--~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 345 NRKLIAKFK--A--ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred chhhccccc--c--CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 988888877 2 3345679999999999886 467999998764
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-15 Score=115.37 Aligned_cols=297 Identities=16% Similarity=0.225 Sum_probs=195.8
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc-----eeeEecCcc------------cceeEEEEecCCC--EEEEe
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL-----LLKTYGGHA------------HEVNDATAACDSS--QIASG 73 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~~ 73 (341)
.+-|.++.|...|.+||||..+|.|.++.-.... ....++.|. ..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4678999999999999999999999999643322 233344443 4688999998654 46677
Q ss_pred cCCCcEEEEECCCCc-----------------------------------eeeee-cccCccEEEEEEcCCCcEEEEecC
Q psy17863 74 ASDKSVILWEVTTGQ-----------------------------------PVRRW-REHASKVTCVKFNEDSSVVISGSQ 117 (341)
Q Consensus 74 ~~dg~i~iw~~~~~~-----------------------------------~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~ 117 (341)
+.|.+|++|.+.... +.+.+ ..|.--|.++.++.|...++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 889999999985421 11111 25777899999999999888875
Q ss_pred CCeEEEEEecCCCC----------------cCeEEeecCCC--ceEEEeeccCeEEEEEccCCcceee----eEee----
Q psy17863 118 DNTVMMWDVKSRSH----------------HPIQCCLDSKD--SQIFCGSSDGKIYKWQLVDSSQIST----LIHS---- 171 (341)
Q Consensus 118 d~~i~iwd~~~~~~----------------~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~~~~----~~~~---- 171 (341)
|-.|.+|+++-... ..+....+++. +.++-.++.|+|++.|++....... +...
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 77899999875331 11223333332 3778889999999999984322111 1100
Q ss_pred ------ecCceEEEEEECCCCceEEEeCCCceEEEEcccccC--------------------CC---CeEEEEEccCCCE
Q psy17863 172 ------VGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYG--------------------QE---PIVDACFTRDCQC 222 (341)
Q Consensus 172 ------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------------------~~---~i~~~~~~~~~~~ 222 (341)
.--..|..+.|+++|+++++-.--++++||+..+.. .. .-..++|+.++.+
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~ 343 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY 343 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcce
Confidence 012457889999999999999889999999965431 11 1245789999999
Q ss_pred EEEeecCCeEEEEeccccce-eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEE
Q psy17863 223 ILTCSTDECLRLFDKATGEL-LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNS 301 (341)
Q Consensus 223 l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 301 (341)
+++|+.....++|+...|.. ..++.........- .. ..-+.+.+++......++ ...+ .....+..
T Consensus 344 v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~--~~-~k~~~V~~~g~r~~~~~~-------vd~l---df~kkilh 410 (433)
T KOG1354|consen 344 VMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPR--KV-LKLRLVSSSGKRKRDEIS-------VDAL---DFRKKILH 410 (433)
T ss_pred EecccccceEEEecCCCCcceeecccccccCCccc--cc-ccceeeecCCCccccccc-------cchh---hhhhHHHh
Confidence 99999999999999765543 22232222111000 00 112244455544332111 1111 23345677
Q ss_pred EEEcCCCcEEEEeCCCcEEEEE
Q psy17863 302 LCSHPTRKHIMSACGNNVKLWT 323 (341)
Q Consensus 302 ~~~~~~~~~l~~~~d~~i~vw~ 323 (341)
.+|+|....+|.+..+.+++|.
T Consensus 411 ~aWhp~en~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 411 TAWHPKENSIAVAATNNLYIFQ 432 (433)
T ss_pred hccCCccceeeeeecCceEEec
Confidence 8999999999998866777763
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-13 Score=110.96 Aligned_cols=279 Identities=9% Similarity=0.123 Sum_probs=173.6
Q ss_pred EEEEeCC----CeEEEEcC--CCccee--eEecCcccceeEEEEecCCCEEEEecC----CCcEEEEECCCC--c--eee
Q psy17863 28 CLTCGSD----KKIKLWNP--YRNLLL--KTYGGHAHEVNDATAACDSSQIASGAS----DKSVILWEVTTG--Q--PVR 91 (341)
Q Consensus 28 l~t~~~d----g~i~iw~~--~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~--~--~~~ 91 (341)
++.|+.. +.|.+|++ .++++. .... .......++++|++++|.+... ++.|..|++... + .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4455554 68888887 444432 2222 3345677899999999998866 578999998764 2 333
Q ss_pred eecccCccEEEEEEcCCCcEEEEec-CCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEe
Q psy17863 92 RWREHASKVTCVKFNEDSSVVISGS-QDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH 170 (341)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~ 170 (341)
...........++++|++++|+++. .+|.|.++++..... +.. ...++...... ....
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~--l~~----------------~~~~~~~~g~g---~~~~ 139 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS--LGE----------------VVQTVRHEGSG---PNPD 139 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE--EEE----------------EEEEEESEEEE---SSTT
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc--cce----------------eeeecccCCCC---Cccc
Confidence 3333455667899999999988886 478899988876320 000 00000000000 0000
Q ss_pred eecCceEEEEEECCCCceEEEeC--CCceEEEEccccc------------CCCCeEEEEEccCCCEEEEee-cCCeEEEE
Q psy17863 171 SVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY------------GQEPIVDACFTRDCQCILTCS-TDECLRLF 235 (341)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~ 235 (341)
........++.++|+++++++.. .+.|.+|++.... .......++|+|+++++++.. .++.|.++
T Consensus 140 rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~ 219 (345)
T PF10282_consen 140 RQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVF 219 (345)
T ss_dssp TTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred ccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEE
Confidence 01234578899999999888875 3788888886543 345567899999999886655 46789999
Q ss_pred ecc--ccc--eeeeecC----cccceeEEEEEeCCCCCEEEEec-CCCcEEEEeeeC-CCceEEEEee-eeccceEEEEE
Q psy17863 236 DKA--TGE--LLEEYKG----HKSGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLVD-SSQISTLIHS-VGKAVVNSLCS 304 (341)
Q Consensus 236 d~~--~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~-~~~~~v~~~~~ 304 (341)
++. +++ .+..+.. .......-.++++|+|++|+++. ..+.|.+|++.. ...+..+... ......+.+++
T Consensus 220 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~ 299 (345)
T PF10282_consen 220 DYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF 299 (345)
T ss_dssp EEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE
T ss_pred eecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE
Confidence 987 332 2222221 11111334458999999987765 567899999942 2233333211 23445899999
Q ss_pred cCCCcEEEEeC--CCcEEEEEccccc
Q psy17863 305 HPTRKHIMSAC--GNNVKLWTAEEDY 328 (341)
Q Consensus 305 ~~~~~~l~~~~--d~~i~vw~~~~~~ 328 (341)
+|+|++|+++. ++.|.+|+++...
T Consensus 300 s~~g~~l~Va~~~s~~v~vf~~d~~t 325 (345)
T PF10282_consen 300 SPDGRYLYVANQDSNTVSVFDIDPDT 325 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred eCCCCEEEEEecCCCeEEEEEEeCCC
Confidence 99999999887 7899999986443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=6e-16 Score=116.64 Aligned_cols=208 Identities=15% Similarity=0.164 Sum_probs=157.9
Q ss_pred ecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCc---eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEec
Q psy17863 51 YGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ---PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 127 (341)
Q Consensus 51 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 127 (341)
+.-...+|+|.+|++|...++++.....|.||.....+ ..++++.|...|+.+.|+|..+.|++++.|..-++|...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 33345789999999999999999999999999987654 577889999999999999999999999999999999874
Q ss_pred CCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccC
Q psy17863 128 SRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYG 207 (341)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 207 (341)
.+.. | ++...+.. +
T Consensus 86 ~~~~-------------------------W-----kptlvLlR------------------------------------i 99 (361)
T KOG1523|consen 86 SGGT-------------------------W-----KPTLVLLR------------------------------------I 99 (361)
T ss_pred CCCe-------------------------e-----ccceeEEE------------------------------------e
Confidence 3220 0 01111110 1
Q ss_pred CCCeEEEEEccCCCEEEEeecCCeEEEEecccccee----eeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 208 QEPIVDACFTRDCQCILTCSTDECLRLFDKATGELL----EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 208 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
+...+++.|+|.++.+++|+....|.+|-++...-- +.-+.+.+.|.++ .|+|++-+|++|+.|+..+++...-
T Consensus 100 NrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sl--dWhpnnVLlaaGs~D~k~rVfSayI 177 (361)
T KOG1523|consen 100 NRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSL--DWHPNNVLLAAGSTDGKCRVFSAYI 177 (361)
T ss_pred ccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeee--eccCCcceecccccCcceeEEEEee
Confidence 445778888888888999999988888877644321 1223345556666 8999999999999999999997521
Q ss_pred ------------------CCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 284 ------------------SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 284 ------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
|+++..+. ...+.+..+.|+|+|..|+-.+ |+.+.+=|...+.
T Consensus 178 K~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 178 KGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred eccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 11222232 3567899999999999999999 9999998877664
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-18 Score=144.05 Aligned_cols=238 Identities=19% Similarity=0.276 Sum_probs=175.7
Q ss_pred ceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEE
Q psy17863 46 LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125 (341)
Q Consensus 46 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 125 (341)
+.++.+.+|...|+|+.|...|.++++|+.|..++||..+++.++...++|.+.|+.++.+.++.++++++.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 34556678999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccc
Q psy17863 126 VKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED 205 (341)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 205 (341)
+..+. ++..+.. +.+.|++++|+|.. .++.+|++++||.+-.
T Consensus 261 l~~~~---------------------------------pvsvLrg--htgavtaiafsP~~---sss~dgt~~~wd~r~~ 302 (1113)
T KOG0644|consen 261 LPDGA---------------------------------PVSVLRG--HTGAVTAIAFSPRA---SSSDDGTCRIWDARLE 302 (1113)
T ss_pred cCCCc---------------------------------hHHHHhc--cccceeeeccCccc---cCCCCCceEecccccc
Confidence 87654 1112211 22335555555544 2333455555555411
Q ss_pred c-----------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCC-CCEEEEecCC
Q psy17863 206 Y-----------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSK-DSQIFCGSSD 273 (341)
Q Consensus 206 ~-----------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d 273 (341)
. ....+.++.|..++..+++++.|+.-..|.+..... +....... ..+.+ ..+.+++-.+
T Consensus 303 ~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~--t~ssd~~~~~~~ar~~ 374 (1113)
T KOG0644|consen 303 PRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFV--TRSSDLSSIVVTARND 374 (1113)
T ss_pred ccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh------hccceEEE--eccccccccceeeeee
Confidence 0 234456677777888899999999888887653221 11111111 11111 2466777788
Q ss_pred CcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEE-EeC-CCcEEEEEcccccCCc
Q psy17863 274 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM-SAC-GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~vw~~~~~~~~~ 331 (341)
-.+++|++.+|...+.+. +|...+..+.++|-...++ +++ ||...|||+-++...+
T Consensus 375 ~~~~vwnl~~g~l~H~l~--ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 375 HRLCVWNLYTGQLLHNLM--GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred eEeeeeecccchhhhhhc--ccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcce
Confidence 899999999999999988 8999999999999766554 566 9999999998776544
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-15 Score=127.60 Aligned_cols=225 Identities=15% Similarity=0.095 Sum_probs=142.9
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeC---CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEE-EecCCC--c
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGS---DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDK--S 78 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~ 78 (341)
..+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+....+...+..|+|||+.|+ +.+.+| .
T Consensus 195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 195 NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 34556677888999999999999998764 347999999877653 3333445556789999999775 445555 5
Q ss_pred EEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecC-CCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 79 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
|.+||+.+++.. .+..+.......+|+||++.|+..+. +|...+ +++
T Consensus 274 Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~i-------------------------------y~~ 321 (433)
T PRK04922 274 IYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQI-------------------------------YRV 321 (433)
T ss_pred EEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceE-------------------------------EEE
Confidence 999999887653 44445555677899999998887653 333222 222
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCC---eEEE
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDE---CLRL 234 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~i 234 (341)
++.+++. ..+... .......+|+|+|++++..+.++ .|.+
T Consensus 322 dl~~g~~-~~lt~~------------------------------------g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v 364 (433)
T PRK04922 322 AASGGSA-ERLTFQ------------------------------------GNYNARASVSPDGKKIAMVHGSGGQYRIAV 364 (433)
T ss_pred ECCCCCe-EEeecC------------------------------------CCCccCEEECCCCCEEEEEECCCCceeEEE
Confidence 2222111 011000 01122356777777776654332 6899
Q ss_pred EeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCC---CcEEEEeeeCCCceEEEEeeeeccceEEEEEcC
Q psy17863 235 FDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD---GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 306 (341)
Q Consensus 235 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 306 (341)
||+.+++.. .+... ..... ..|+|+|++++..+.+ +.|+++++ ++.....+. .+.+.+...+|+|
T Consensus 365 ~d~~~g~~~-~Lt~~-~~~~~--p~~spdG~~i~~~s~~~g~~~L~~~~~-~g~~~~~l~--~~~g~~~~p~wsp 432 (433)
T PRK04922 365 MDLSTGSVR-TLTPG-SLDES--PSFAPNGSMVLYATREGGRGVLAAVST-DGRVRQRLV--SADGEVREPAWSP 432 (433)
T ss_pred EECCCCCeE-ECCCC-CCCCC--ceECCCCCEEEEEEecCCceEEEEEEC-CCCceEEcc--cCCCCCCCCccCC
Confidence 998877654 33321 12222 3799999988766543 45777876 455556665 4556677888887
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-15 Score=113.97 Aligned_cols=286 Identities=12% Similarity=0.107 Sum_probs=192.3
Q ss_pred CcEEEEEEccCCCEEEEE-eCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEE-EecCCCcEEEEECCCCceee
Q psy17863 14 GAIRAVRFNVDGSYCLTC-GSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKSVILWEVTTGQPVR 91 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~ 91 (341)
+.|..+.|..|..+++.+ ..++.|.+|++...+-...+.....++..+.|+|||+.++ +...+-.|.+|.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 567788999888776654 5688999999999998899998999999999999996655 55668899999998766543
Q ss_pred eecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC-----------CcCeEEeecCCCceEEEeeccCeEEEEEcc
Q psy17863 92 RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-----------HHPIQCCLDSKDSQIFCGSSDGKIYKWQLV 160 (341)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~ 160 (341)
++-.+..+..++|+|||++.+..+.-......++...+ ......+..+++ +..+.+||..
T Consensus 129 -~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd--------g~~laVwd~~ 199 (447)
T KOG4497|consen 129 -LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD--------GNWLAVWDNV 199 (447)
T ss_pred -ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC--------CcEEEEecch
Confidence 23334556889999999998887753221111111100 001111222222 3345666643
Q ss_pred CCcceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccc-----cc----------------------------
Q psy17863 161 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEE-----DY---------------------------- 206 (341)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~-----~~---------------------------- 206 (341)
-.-.+.... ..-.+..+.|+|.++++++++- +.+++.+--+ +.
T Consensus 200 Leykv~aYe---~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~c 276 (447)
T KOG4497|consen 200 LEYKVYAYE---RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHC 276 (447)
T ss_pred hhheeeeee---eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccc
Confidence 322222221 2234788999999999999874 5555533111 00
Q ss_pred ----------------------------------------CCCCeEEEEEccCCCEEEEeecC--CeEEEEeccccceee
Q psy17863 207 ----------------------------------------GQEPIVDACFTRDCQCILTCSTD--ECLRLFDKATGELLE 244 (341)
Q Consensus 207 ----------------------------------------~~~~i~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~ 244 (341)
....+.-++|++|..++++-... +.+.+||++..+.-.
T Consensus 277 Lsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~a 356 (447)
T KOG4497|consen 277 LSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHA 356 (447)
T ss_pred cccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhh
Confidence 11235668999999998886543 569999998776655
Q ss_pred eecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CC
Q psy17863 245 EYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GN 317 (341)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~ 317 (341)
.+. ...+|... .|+|....|+.+.....+++|...-...+ ..+ ...-.|..+.|..+|..++..+ |.
T Consensus 357 vLi-Qk~piraf--~WdP~~prL~vctg~srLY~W~psg~~~V-~vP--~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 357 VLI-QKHPIRAF--EWDPGRPRLVVCTGKSRLYFWAPSGPRVV-GVP--KKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred hhh-hccceeEE--EeCCCCceEEEEcCCceEEEEcCCCceEE-ecC--CCCceeeeEEecCCCcEEEEEcCCc
Confidence 443 33455544 78999888888887888999986443332 333 3446899999999999999998 65
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-15 Score=126.43 Aligned_cols=230 Identities=12% Similarity=0.111 Sum_probs=148.1
Q ss_pred CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCC---CcEEEEECCCCceeeeecccCccEEEEEEcCCCcE
Q psy17863 35 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD---KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSV 111 (341)
Q Consensus 35 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 111 (341)
..|.++|. ++.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 46788886 444445565677889999999999998876643 459999998887543 3333455678999999988
Q ss_pred EE-EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEE
Q psy17863 112 VI-SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 190 (341)
Q Consensus 112 l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (341)
|+ +.+.+|...+|.++.. .+. ...+.. +........|+|+|+.++
T Consensus 254 la~~~~~~g~~~Iy~~d~~-------------------------------~~~-~~~lt~--~~~~~~~~~wSpDG~~l~ 299 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNAD-------------------------------GSG-LRRLTQ--SSGIDTEPFFSPDGRSIY 299 (427)
T ss_pred EEEEEccCCCceEEEEECC-------------------------------CCC-cEECCC--CCCCCcCeEEcCCCCEEE
Confidence 76 4566776666654321 111 111111 112234567999999887
Q ss_pred EeCC--CceEEEEccc--cc------CCCCeEEEEEccCCCEEEEeecCC---eEEEEeccccceeeeecCcccceeEEE
Q psy17863 191 SACG--NNVKLWTAEE--DY------GQEPIVDACFTRDCQCILTCSTDE---CLRLFDKATGELLEEYKGHKSGDFRIE 257 (341)
Q Consensus 191 ~~~~--~~i~~~~~~~--~~------~~~~i~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~ 257 (341)
..++ +...+|.+.. .. .........|+|||++++..+.++ .|.+||+.+++... +... ......
T Consensus 300 f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p- 376 (427)
T PRK02889 300 FTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESP- 376 (427)
T ss_pred EEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCc-
Confidence 6553 4556665432 11 122234578999999998776654 69999998876543 3222 122233
Q ss_pred EEeCCCCCEEEEecCCC---cEEEEeeeCCCceEEEEeeeeccceEEEEEcCC
Q psy17863 258 CCLDSKDSQIFCGSSDG---KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 258 ~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
.|+|+|+.|+..+.++ .+++.++ +++....+. .+.+.+...+|+|-
T Consensus 377 -~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~--~~~g~~~~p~wsp~ 425 (427)
T PRK02889 377 -SFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLS--VQGGDVREPSWGPF 425 (427)
T ss_pred -eECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEee--cCCCCCCCCccCCC
Confidence 7999999988776544 3555555 466666665 45667888888874
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-15 Score=119.89 Aligned_cols=267 Identities=10% Similarity=0.139 Sum_probs=194.4
Q ss_pred CcccceeEEEEecCCCEE-EEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC-
Q psy17863 53 GHAHEVNDATAACDSSQI-ASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS- 130 (341)
Q Consensus 53 ~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~- 130 (341)
.+...-+.|..+|||+|+ ++|...-.|++||+.+......-......|.-.-.+.|-..++.-..|.+|.+...-...
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 367778999999999985 567778899999997654433222223445555555566666666677777765432211
Q ss_pred -----CcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccc
Q psy17863 131 -----HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 204 (341)
Q Consensus 131 -----~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~ 204 (341)
..........+..-++.++....|+-+++..+..+..+.... ..++++..++...++++++ ++.+..||.+.
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~--~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS--GELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccccc--ccceeeeecCccceEEecccCceEEEecchh
Confidence 111222334455567778888889999999999888776543 5599999999999999998 69999999876
Q ss_pred cc------------------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCC--C
Q psy17863 205 DY------------------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSK--D 264 (341)
Q Consensus 205 ~~------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 264 (341)
.. ....|+++.|+.+|-.+++|+.+|.+.+||+++.+++..- .|........+.|.+. +
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeeecccccCCC
Confidence 32 2235999999999999999999999999999988876543 3554444443355443 4
Q ss_pred CEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 265 SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 265 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
+.+++. ....++|||-.+|+....+. ....++.+|+-|++-+++++. +..+..|-++.
T Consensus 286 ~~v~S~-Dk~~~kiWd~~~Gk~~asiE---pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 286 NKVVSM-DKRILKIWDECTGKPMASIE---PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ceEEec-chHHhhhcccccCCceeecc---ccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 455554 45689999999999998887 345599999999999999998 77777766554
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-17 Score=131.69 Aligned_cols=188 Identities=13% Similarity=0.188 Sum_probs=152.1
Q ss_pred ecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc-----CCCCeE
Q psy17863 138 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY-----GQEPIV 212 (341)
Q Consensus 138 ~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~i~ 212 (341)
...++..++.|+..|.+..+|..+.+....+.. ...|..+.|-.+.++++++..+.+.+||-.... ....+.
T Consensus 137 ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v---~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v~ 213 (545)
T KOG1272|consen 137 YTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV---METVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRVA 213 (545)
T ss_pred ecCCccEEEecCCccceeeeecccceeeeeeeh---hhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCchh
Confidence 333344445555555555555555554444432 234788888888999999998999999876543 457788
Q ss_pred EEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEe
Q psy17863 213 DACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH 292 (341)
Q Consensus 213 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 292 (341)
.+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..+ +-+|-+..+-+|...|+|.+|.....+++..+.
T Consensus 214 rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm--~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL- 290 (545)
T KOG1272|consen 214 RLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVM--KQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL- 290 (545)
T ss_pred hhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchh--hcCCccceEEEcCCCceEEecCCCCcchHHHHH-
Confidence 99999999999999999999999999999999998877777777 778888889999999999999999999998888
Q ss_pred eeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCcc
Q psy17863 293 SVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQAG 332 (341)
Q Consensus 293 ~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~~ 332 (341)
.|.++|.++++.++|+|+||++ |..++|||+..-.....
T Consensus 291 -cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t 330 (545)
T KOG1272|consen 291 -CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHT 330 (545)
T ss_pred -hcCCCcceEEECCCCcEEeecccccceeEeeeccccccce
Confidence 8999999999999999999999 99999999987654443
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.6e-16 Score=113.07 Aligned_cols=263 Identities=13% Similarity=0.132 Sum_probs=167.0
Q ss_pred ceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeec-ccCccEEEEEEcCCCcEEEEecCCCeEEEE
Q psy17863 46 LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR-EHASKVTCVKFNEDSSVVISGSQDNTVMMW 124 (341)
Q Consensus 46 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 124 (341)
.+...++.|.+.++++.|..++ +|.+|..-|.|++|++++.+....++ .+...|+.+.-.|+ ..+.+-+.|+.+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 3556778899999999998766 49999999999999999998888888 57788999999887 568899999999999
Q ss_pred EecCCCCcCeEEeecCCCc----eEEEeeccC-eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEE
Q psy17863 125 DVKSRSHHPIQCCLDSKDS----QIFCGSSDG-KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKL 199 (341)
Q Consensus 125 d~~~~~~~~~~~~~~~~~~----~~~~~~~~g-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 199 (341)
++.......+..+....-+ .+...+... .+..++-+........ . .+..-.+++
T Consensus 83 ~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~----D-----------------~g~~tqv~i 141 (323)
T KOG0322|consen 83 TIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQ----D-----------------GGDTTQVQI 141 (323)
T ss_pred EccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhh----c-----------------cCccceeEc
Confidence 9987442222211110000 000000000 0001110000000000 0 000012333
Q ss_pred EEcccccCCCCeEEEEEcc-CC--CEEEEeecCCeEEEEeccccc----------eeeeecCcccceeEEEEEeCCCCCE
Q psy17863 200 WTAEEDYGQEPIVDACFTR-DC--QCILTCSTDECLRLFDKATGE----------LLEEYKGHKSGDFRIECCLDSKDSQ 266 (341)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~-~~--~~l~~~~~d~~i~i~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (341)
-+-......+.+.+..+.. ++ -++++|-++|.+.+||+.++. .......|..++..+ .+.+.-..
T Consensus 142 ~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsl--dyas~~~r 219 (323)
T KOG0322|consen 142 ADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSL--DYASSCDR 219 (323)
T ss_pred cCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceee--eechhhcC
Confidence 3333333445566655433 22 346788899999999999873 333445688888888 44455455
Q ss_pred EEEecCCCcEEEEeeeCC--CceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCccc
Q psy17863 267 IFCGSSDGKIYKWQLVDS--SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQAGL 333 (341)
Q Consensus 267 l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~~~ 333 (341)
=++|+.+..+..|++... .+............|..+..-||++.+|+++ |++||||..++....+.+
T Consensus 220 Gisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL 289 (323)
T KOG0322|consen 220 GISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL 289 (323)
T ss_pred CcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh
Confidence 677888888999988653 2221111113455788899999999999999 999999999987666544
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=5e-16 Score=125.31 Aligned_cols=244 Identities=16% Similarity=0.240 Sum_probs=145.7
Q ss_pred ceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeee-cccCccEEEEEEcC--CCcEEEEecCCCeEE
Q psy17863 46 LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW-REHASKVTCVKFNE--DSSVVISGSQDNTVM 122 (341)
Q Consensus 46 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~ 122 (341)
.+..++.+|++.|+|+.|+.+|.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|-| +...+++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 345678899999999999999999999999999999999888887766 57999999999998 677899999999999
Q ss_pred EEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCC-ceEE-EeCCCceEEE
Q psy17863 123 MWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR-KHIM-SACGNNVKLW 200 (341)
Q Consensus 123 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~i~~~ 200 (341)
++|+...+.....- +..-+++.|.. +...|..++..|++ ..+. ++.+|.++-+
T Consensus 121 lfdl~~~~~~~~d~------------~~~~~~~~~~c-------------ht~rVKria~~p~~PhtfwsasEDGtirQy 175 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDH------------GMEETTRCWSC-------------HTDRVKRIATAPNGPHTFWSASEDGTIRQY 175 (758)
T ss_pred EEeccccccccccc------------Cccchhhhhhh-------------hhhhhhheecCCCCCceEEEecCCcceeee
Confidence 99998643211000 00001111211 22345566666666 2233 3335677777
Q ss_pred Eccccc-----------------CCCCeEEEEEccC-CCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCC
Q psy17863 201 TAEEDY-----------------GQEPIVDACFTRD-CQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDS 262 (341)
Q Consensus 201 ~~~~~~-----------------~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (341)
|+++.. ..-...++.++|. ..+|++|+.|-..++||.+. .+..+..... . .+.|
T Consensus 176 DiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr--~lks~~s~~~----~--~~~p 247 (758)
T KOG1310|consen 176 DIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR--VLKSFRSDGT----M--NTCP 247 (758)
T ss_pred cccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh--hccCCCCCcc----c--cCCC
Confidence 776632 1123456666764 44566777777777777431 1122211100 0 0001
Q ss_pred CCCEEEEecCCCcEEEEeeeCCCceEE-EEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCc
Q psy17863 263 KDSQIFCGSSDGKIYKWQLVDSSQIST-LIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 263 ~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~ 331 (341)
. -.++.++-|-....+.... +. .....++-+.|+|+|.-|+..- ...|+++++..+....
T Consensus 248 p-------~~~~cv~yf~p~hlkn~~gn~~--~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 248 P-------KDCRCVRYFSPGHLKNSQGNLD--RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred C-------cccchhheecCccccCcccccc--cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 0 0011111111000000000 00 0112367789999997666655 7889999998776543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-14 Score=122.79 Aligned_cols=227 Identities=13% Similarity=0.093 Sum_probs=146.5
Q ss_pred CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC---CCcEEEEECCCCceeeeecccCccEEEEEEcCCCcE
Q psy17863 35 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS---DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSV 111 (341)
Q Consensus 35 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 111 (341)
..|.++|.. +...+.+..+...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+...+|+|||+.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 478899974 4445667678889999999999999887653 468999999887653 34445667788999999987
Q ss_pred EE-EecCCCe--EEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCce
Q psy17863 112 VI-SGSQDNT--VMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKH 188 (341)
Q Consensus 112 l~-~~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (341)
|+ +.+.++. |.+||+.++. . ..+.. .........|+|+++.
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~---------------------------------~-~~Lt~--~~~~~~~~~~spDG~~ 303 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGT---------------------------------T-TRLTD--SPAIDTSPSYSPDGSQ 303 (435)
T ss_pred EEEEEecCCCceEEEEECCCCc---------------------------------e-EEccC--CCCccCceeEcCCCCE
Confidence 75 4444443 4444444322 1 11111 1123456789999998
Q ss_pred EEEeCC----CceEEEEccccc------CCCCeEEEEEccCCCEEEEeecC---CeEEEEeccccceeeeecCcccceeE
Q psy17863 189 IMSACG----NNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTD---ECLRLFDKATGELLEEYKGHKSGDFR 255 (341)
Q Consensus 189 ~~~~~~----~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~ 255 (341)
++..++ ..+.+++..... ....+....|+|+|+.|+....+ ..|.+||+..+.. ..+.. ...+..
T Consensus 304 i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~ 381 (435)
T PRK05137 304 IVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEG 381 (435)
T ss_pred EEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCC
Confidence 877653 257777765432 23445668899999999876643 3688888765443 33322 122333
Q ss_pred EEEEeCCCCCEEEEecCC------CcEEEEeeeCCCceEEEEeeeeccceEEEEEcCC
Q psy17863 256 IECCLDSKDSQIFCGSSD------GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 256 ~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
. .|+|||+.|+..+.+ ..++++|+..+.. ..+. ....+...+|+|-
T Consensus 382 p--~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~---~~~~~~~p~Wsp~ 433 (435)
T PRK05137 382 P--TWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP---TPGDASDPAWSPL 433 (435)
T ss_pred C--eECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc---CCCCccCcccCCC
Confidence 3 799999988765432 2577778755433 4443 2344677788773
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.2e-14 Score=112.78 Aligned_cols=302 Identities=13% Similarity=0.141 Sum_probs=207.2
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCC---------------
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD--------------- 76 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------- 76 (341)
..-++..++|||.|.+|++.... .|.+|.-.....+..+. | ..|..+.|+|.+++|.+=+..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 45688899999999999987755 49999988777666665 3 468999999999999986543
Q ss_pred CcEEEEECCCCceeeeecccCcc--EE-EEEEcCCCcEEEEecCCCeEEEEEecCC-CC--------cCeEEeecCCC--
Q psy17863 77 KSVILWEVTTGQPVRRWREHASK--VT-CVKFNEDSSVVISGSQDNTVMMWDVKSR-SH--------HPIQCCLDSKD-- 142 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~--------~~~~~~~~~~~-- 142 (341)
..+.+||+.+|..+..+.....+ .+ -+.|+-+.+++|-. ....+.++++... .. ..+......+.
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n 186 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGN 186 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEecCCCC
Confidence 34999999999999998876655 45 67888887777655 3457899986221 11 11222222222
Q ss_pred -ceEEE-----eeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC------------CCceEEEEccc
Q psy17863 143 -SQIFC-----GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC------------GNNVKLWTAEE 204 (341)
Q Consensus 143 -~~~~~-----~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~i~~~~~~~ 204 (341)
..++. ....+.+++|.+.....+...... +..-..+.|++.|+++++-. ...++++++..
T Consensus 187 ~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf--k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 187 HDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF--KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred CceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE--eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 12222 345667788887755544433221 12235688899998876532 24578888775
Q ss_pred cc------CCCCeEEEEEccCCCEEEEe--ecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCC---
Q psy17863 205 DY------GQEPIVDACFTRDCQCILTC--STDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD--- 273 (341)
Q Consensus 205 ~~------~~~~i~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--- 273 (341)
.. ..++|...+|.|.++.+++. -.+..+.++|++.. ....+ ....-..+ .|+|.+++++.++-|
T Consensus 265 ~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~--~fsp~~r~il~agF~nl~ 339 (561)
T COG5354 265 RSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTI--FFSPHERYILFAGFDNLQ 339 (561)
T ss_pred cccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccc--cccCcccEEEEecCCccc
Confidence 43 47899999999998877654 46788999998854 43333 23333344 799999999887654
Q ss_pred CcEEEEeeeCCCceE-EEEeeeeccceEEEEEcCCCcEEEEeC-------CCcEEEEEccccc
Q psy17863 274 GKIYKWQLVDSSQIS-TLIHSVGKAVVNSLCSHPTRKHIMSAC-------GNNVKLWTAEEDY 328 (341)
Q Consensus 274 g~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-------d~~i~vw~~~~~~ 328 (341)
|.+-+||........ .+. ....+-+.|+||++++.+.. |..|+||++....
T Consensus 340 gni~i~~~~~rf~~~~~~~----~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 340 GNIEIFDPAGRFKVAGAFN----GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred cceEEeccCCceEEEEEee----cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 789999976544433 333 33455568999999988764 5679999987653
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=128.77 Aligned_cols=100 Identities=23% Similarity=0.307 Sum_probs=93.4
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCC
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 87 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 87 (341)
.+.--.+.|+..+|+|||++||+.+.||.++|||..+.+++..++..-+...|++|+|||++|++|++|--|.||.+..+
T Consensus 285 ~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er 364 (636)
T KOG2394|consen 285 RWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER 364 (636)
T ss_pred eeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc
Confidence 33444568999999999999999999999999999999999888888899999999999999999999999999999999
Q ss_pred ceeeeecccCccEEEEEEcC
Q psy17863 88 QPVRRWREHASKVTCVKFNE 107 (341)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~ 107 (341)
+.+..-++|++.|..++|.|
T Consensus 365 RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 365 RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred eEEEeccccccceeeEeecc
Confidence 99999999999999999987
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.2e-15 Score=115.68 Aligned_cols=232 Identities=14% Similarity=0.171 Sum_probs=152.9
Q ss_pred eeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc----eeeEecCcccceeEEEEecCCC-EEEEecCC--CcEEEEE
Q psy17863 11 CKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL----LLKTYGGHAHEVNDATAACDSS-QIASGASD--KSVILWE 83 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d--g~i~iw~ 83 (341)
...++|..++.. || .|++|-.+|.+.+|....+. .+..+..+ .++..+.-++... .+++|+.. ..+.+||
T Consensus 103 l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 103 LGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWD 179 (412)
T ss_pred cccccccchhhc-CC-EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeee
Confidence 344556555553 33 68888889999999987432 33344433 4566666666544 45568888 8899999
Q ss_pred CCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCc
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSS 163 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~ 163 (341)
++..+.+.+-+.-.. . +| +=.|.+|+.. +..+...+...+++++.-+.+++||.+.++
T Consensus 180 le~~~qiw~aKNvpn----------D-~L-----~LrVPvW~td------i~Fl~g~~~~~fat~T~~hqvR~YDt~~qR 237 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPN----------D-RL-----GLRVPVWITD------IRFLEGSPNYKFATITRYHQVRLYDTRHQR 237 (412)
T ss_pred cccceeeeeccCCCC----------c-cc-----cceeeeeecc------ceecCCCCCceEEEEecceeEEEecCcccC
Confidence 998765554432111 1 01 1223334322 111111223345555555555555554322
Q ss_pred ceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEecccccee
Q psy17863 164 QISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELL 243 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 243 (341)
.+|.++.+. +.+++++...|+++++++|..-+.+..||++.++.+
T Consensus 238 -----------RPV~~fd~~------------------------E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 238 -----------RPVAQFDFL------------------------ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred -----------cceeEeccc------------------------cCcceeeeecCCCcEEEEecccchhheecccCceee
Confidence 122222222 457888999999999999999999999999999987
Q ss_pred ee-ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCC
Q psy17863 244 EE-YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 244 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
.. +.+..+.+..+ ..+|..+++++++-|..++|+|+.+.+++.... -...++++.+.++
T Consensus 283 g~~~kg~tGsirsi--h~hp~~~~las~GLDRyvRIhD~ktrkll~kvY---vKs~lt~il~~~~ 342 (412)
T KOG3881|consen 283 GCGLKGITGSIRSI--HCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY---VKSRLTFILLRDD 342 (412)
T ss_pred ccccCCccCCcceE--EEcCCCceEEeeccceeEEEeecccchhhhhhh---hhccccEEEecCC
Confidence 76 88889999988 678999999999999999999999977776665 3455677777554
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.3e-13 Score=105.83 Aligned_cols=250 Identities=12% Similarity=0.087 Sum_probs=169.7
Q ss_pred CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC----------CCcEEEEECCCCceeeeecccCc------
Q psy17863 35 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS----------DKSVILWEVTTGQPVRRWREHAS------ 98 (341)
Q Consensus 35 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~------ 98 (341)
+.|.+.|..+++.+..+.....+-. + ++||++.|+++.. +..|.+||..+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8999999999999888875444333 4 9999998887755 78899999999999988764222
Q ss_pred -cEEEEEEcCCCcEEEEec-C-CCeEEEEEecCCCCcCeEEeecCCCceEE--------EeeccCeEEEEEccCCcceee
Q psy17863 99 -KVTCVKFNEDSSVVISGS-Q-DNTVMMWDVKSRSHHPIQCCLDSKDSQIF--------CGSSDGKIYKWQLVDSSQIST 167 (341)
Q Consensus 99 -~v~~~~~~~~~~~l~~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~g~i~~~d~~~~~~~~~ 167 (341)
....++++|||++|+... . +..|.+.|+.+++. +.....+....++ +-+.||......+.+......
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv--v~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~ 182 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF--VRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKI 182 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE--EEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEE
Confidence 234789999999998766 3 68999999998762 2222222222222 234555555444433222111
Q ss_pred eEeee--c-CceE-EEEEECC-CCceEEEeCCCceEEEEccccc-------------------CCCCeEEEEEccCCCEE
Q psy17863 168 LIHSV--G-KAVV-NSLCSHP-TRKHIMSACGNNVKLWTAEEDY-------------------GQEPIVDACFTRDCQCI 223 (341)
Q Consensus 168 ~~~~~--~-~~~~-~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~-------------------~~~~i~~~~~~~~~~~l 223 (341)
..... . ...+ ..-.+.+ +++++..+..|.+.+.|+.... ....+.-++++|+++.+
T Consensus 183 ~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 183 KPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 11110 0 0000 0002344 8888888888999999854321 22334459999999988
Q ss_pred EEee----------cCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCC-EEEEec-CCCcEEEEeeeCCCceEEEE
Q psy17863 224 LTCS----------TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS-QIFCGS-SDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 224 ~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~ 291 (341)
++.. ..+.|.++|..+++.+..+..- .....+ +++||++ +|++.. .++.|.++|..+++.+..+.
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~i--avS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSI--NVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeE--EECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 8742 2257999999999998888743 344555 8999999 777665 67889999999999998884
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.5e-15 Score=111.35 Aligned_cols=237 Identities=12% Similarity=0.191 Sum_probs=180.0
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcC-CCcceeeEec-CcccceeEEEEecCCCEEEEecCCCcEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNP-YRNLLLKTYG-GHAHEVNDATAACDSSQIASGASDKSVI 80 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 80 (341)
+.+++.++||.+.|+....-|-.+-+++.+.|.+++||-- +.++.-..+. ....+++++.+.++...|++|-.+|++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 4567889999999999999898888999999999999953 3344333332 2456789999999999999999999999
Q ss_pred EEECC----CCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcC--eEEeecCC----CceEEEeec
Q psy17863 81 LWEVT----TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP--IQCCLDSK----DSQIFCGSS 150 (341)
Q Consensus 81 iw~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~----~~~~~~~~~ 150 (341)
-+.+. .....+.+..|...+..+-|+.....+++.+.|..+.---.+.+..-. .......+ -.+.+.|..
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~ 173 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH 173 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence 88764 345567777899999999999988999999999877655555443211 11111111 115667777
Q ss_pred cCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc--------CCCCeEEEEEccCCC
Q psy17863 151 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY--------GQEPIVDACFTRDCQ 221 (341)
Q Consensus 151 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~--------~~~~i~~~~~~~~~~ 221 (341)
.|.+....+.............+...+.+++|.|....+.++. +..+.+||+.... +...+..+...+--+
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~ 253 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR 253 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe
Confidence 8888777766655555555566778899999999999988887 4789999987644 667777777777788
Q ss_pred EEEEeecCCeEEEEeccc
Q psy17863 222 CILTCSTDECLRLFDKAT 239 (341)
Q Consensus 222 ~l~~~~~d~~i~i~d~~~ 239 (341)
.+++++.||.|.+|+++.
T Consensus 254 ~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 254 QLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eeeeccCCCeEEEEeccc
Confidence 899999999999999763
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.7e-14 Score=116.62 Aligned_cols=284 Identities=12% Similarity=0.088 Sum_probs=178.9
Q ss_pred CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEE-
Q psy17863 24 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTC- 102 (341)
Q Consensus 24 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~- 102 (341)
.+..+++++.+|.|..+|..+|+.+..++........... ++..+++++.+|.+..+|.++|+.+....... .+.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~ 140 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSP 140 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecC
Confidence 3567888888999999999999988776644332222222 56788888999999999999999887765332 2221
Q ss_pred EEEcCCCcEEEEecCCCeEEEEEecCCCCcCeE------------EeecCCCceEEEeeccCeEEEEEccCCcceeeeEe
Q psy17863 103 VKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ------------CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH 170 (341)
Q Consensus 103 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~ 170 (341)
... .+..++.++.++.+..+|.++++..-.. ......++.++.+..+|.+..+|.++++.......
T Consensus 141 p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 141 PLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred CEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 111 3446777788999999999876521100 00011234678888899999999988876654322
Q ss_pred eecC--ce------E-EEEEECCCCceEEEeCCCceEEEEcccccC-----CCCeEEEEEccCCCEEEEeecCCeEEEEe
Q psy17863 171 SVGK--AV------V-NSLCSHPTRKHIMSACGNNVKLWTAEEDYG-----QEPIVDACFTRDCQCILTCSTDECLRLFD 236 (341)
Q Consensus 171 ~~~~--~~------~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 236 (341)
.... .. + ....+ .++..++...++.+..+|..+... ..... .....+..+++++.+|.+..+|
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~--~p~~~~~~vyv~~~~G~l~~~d 295 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQ--GPAVDDNRLYVTDADGVVVALD 295 (377)
T ss_pred ccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEeeccCCcc--CceEeCCEEEEECCCCeEEEEE
Confidence 1100 00 0 01111 134455555568888888765430 00111 1122456788888999999999
Q ss_pred ccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccce-EEEEEcCCCcEEEEeC
Q psy17863 237 KATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVV-NSLCSHPTRKHIMSAC 315 (341)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~ 315 (341)
..+++.+.+.......... .+...+..+++++.+|.++++|..+++.+.++. .+...+ .+..+ .+++ |+.++
T Consensus 296 ~~tG~~~W~~~~~~~~~~s---sp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~--~~~~~~~~sp~~-~~~~-l~v~~ 368 (377)
T TIGR03300 296 RRSGSELWKNDELKYRQLT---APAVVGGYLVVGDFEGYLHWLSREDGSFVARLK--TDGSGIASPPVV-VGDG-LLVQT 368 (377)
T ss_pred CCCCcEEEccccccCCccc---cCEEECCEEEEEeCCCEEEEEECCCCCEEEEEE--cCCCccccCCEE-ECCE-EEEEe
Confidence 9999887655322211111 111135689999999999999999999998887 344333 22233 3444 55555
Q ss_pred -CCcEEEE
Q psy17863 316 -GNNVKLW 322 (341)
Q Consensus 316 -d~~i~vw 322 (341)
||.|+.|
T Consensus 369 ~dG~l~~~ 376 (377)
T TIGR03300 369 RDGDLYAF 376 (377)
T ss_pred CCceEEEe
Confidence 9998765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.9e-14 Score=112.97 Aligned_cols=300 Identities=13% Similarity=0.179 Sum_probs=195.0
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC-----------CCcEEEEECC
Q psy17863 17 RAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS-----------DKSVILWEVT 85 (341)
Q Consensus 17 ~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iw~~~ 85 (341)
+-+.|||.|.||+|--..| |.+|--.+...++.|. |. .|.-+.|||+.+||++-+. ...++|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 5689999999999988766 8999877777777776 54 4888999999999998653 2569999999
Q ss_pred CCceeeeeccc--CccE-EEEEEcCCCcEEEEecCCCeEEEEEecCC--------CCcCeEEeecCCCceEEEe-ec---
Q psy17863 86 TGQPVRRWREH--ASKV-TCVKFNEDSSVVISGSQDNTVMMWDVKSR--------SHHPIQCCLDSKDSQIFCG-SS--- 150 (341)
Q Consensus 86 ~~~~~~~~~~~--~~~v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~-~~--- 150 (341)
+|...+.+... ...+ .-..||.|++++|....+ .|.||+..+. +...+.-..+++.+.+++- +.
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~ 369 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN 369 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence 99998888652 2222 346899999999988764 6888876542 2233344444444333221 11
Q ss_pred --cCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-----------CceEEEEccccc-------CCCC
Q psy17863 151 --DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-----------NNVKLWTAEEDY-------GQEP 210 (341)
Q Consensus 151 --~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~i~~~~~~~~~-------~~~~ 210 (341)
-..+.+-.+.+.+.++..... .-.-..+-|..+|.+|..-.+ ..+.|+.++... ....
T Consensus 370 ~~parvtL~evPs~~~iRt~nlf--nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~ 447 (698)
T KOG2314|consen 370 NIPARVTLMEVPSKREIRTKNLF--NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKES 447 (698)
T ss_pred CCcceEEEEecCccceeeeccce--eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchh
Confidence 112333333333333322111 111124567778888876532 236667666544 4577
Q ss_pred eEEEEEccCCCEEEEeec---CCeEEEEecccc----ceeeeecCcccceeEEEEEeCCCCCEEEEe---cCCCcEEEEe
Q psy17863 211 IVDACFTRDCQCILTCST---DECLRLFDKATG----ELLEEYKGHKSGDFRIECCLDSKDSQIFCG---SSDGKIYKWQ 280 (341)
Q Consensus 211 i~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~iwd 280 (341)
+...+|-|.|+.+++-+. ..++.+|.+++. +++..+.. ..+..+.|+|.|++++.+ +..|.+.++|
T Consensus 448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred eeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 889999999988876543 356888887732 23444432 233344899999998865 4678999999
Q ss_pred eeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-C------CcEEEEEccccc
Q psy17863 281 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G------NNVKLWTAEEDY 328 (341)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d------~~i~vw~~~~~~ 328 (341)
.........-. ......+.+.|.|.|+|+++++ . ..-++|++.+..
T Consensus 524 ~~~a~~k~~~~--~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 524 TDYADLKDTAS--PEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred cchhhhhhccC--ccccccccceECCCCCEEEEeeehhhhccccceEEEEeecHH
Confidence 87433222211 1223567889999999999986 3 345677776543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-15 Score=110.63 Aligned_cols=142 Identities=15% Similarity=0.268 Sum_probs=106.2
Q ss_pred EEEEECCCCceEEEeCC-----------CceEEEEccccc---------CCCCeEEEEEccCCCEEEEe--ecCCeEEEE
Q psy17863 178 NSLCSHPTRKHIMSACG-----------NNVKLWTAEEDY---------GQEPIVDACFTRDCQCILTC--STDECLRLF 235 (341)
Q Consensus 178 ~~~~~~~~~~~~~~~~~-----------~~i~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~--~~d~~i~i~ 235 (341)
..+.|+|+|..|++... +...+|.++... ...+|.+++|+|+|+.+++. ..++.+.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46778888887766432 235555553322 34579999999999987654 467799999
Q ss_pred eccccceeeeecCcccceeEEEEEeCCCCCEEEEecC---CCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEE
Q psy17863 236 DKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS---DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 312 (341)
Q Consensus 236 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 312 (341)
|++ ++.+..+. ......+ .|+|+|++|++++. .|.|.+||.++.+.+.... |. .++.++|+|||++|+
T Consensus 89 d~~-~~~i~~~~--~~~~n~i--~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---~~-~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTI--SWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---HS-DATDVEWSPDGRYLA 159 (194)
T ss_pred cCc-ccEeEeec--CCCceEE--EECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---cC-cEEEEEEcCCCCEEE
Confidence 997 66666665 3344555 89999999998864 4679999999888877765 33 478999999999999
Q ss_pred EeC-------CCcEEEEEccccc
Q psy17863 313 SAC-------GNNVKLWTAEEDY 328 (341)
Q Consensus 313 ~~~-------d~~i~vw~~~~~~ 328 (341)
++. |+.++||+..+..
T Consensus 160 ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred EEEeccceeccccEEEEEecCeE
Confidence 885 5678999997654
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.9e-14 Score=118.42 Aligned_cols=214 Identities=12% Similarity=0.091 Sum_probs=130.3
Q ss_pred CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEec---CCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcE
Q psy17863 35 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA---SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSV 111 (341)
Q Consensus 35 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 111 (341)
..|.+||...... +.+..+...+...+|+|||+.|+..+ .+..+.+|++.+++.... ......+....|+|||+.
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence 3799999765443 44445677899999999999988654 245799999988764332 222333456899999998
Q ss_pred EEEe-cCCC--eEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCce
Q psy17863 112 VISG-SQDN--TVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKH 188 (341)
Q Consensus 112 l~~~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (341)
|+.. +.+| .|.+||+++ ++... +.. .
T Consensus 257 La~~~~~~g~~~I~~~d~~t---------------------------------g~~~~-lt~--~--------------- 285 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLAS---------------------------------GQIRQ-VTD--G--------------- 285 (429)
T ss_pred EEEEEcCCCCcEEEEEECCC---------------------------------CCEEE-ccC--C---------------
Confidence 8765 3333 244444433 22111 100 0
Q ss_pred EEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecC-C--eEEEEeccccceeeeecCcccceeEEEEEeCCCCC
Q psy17863 189 IMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTD-E--CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS 265 (341)
Q Consensus 189 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (341)
...+....|+|||+.|+..+.+ + .|+++|+.+++. ..+.......... .++|+|+
T Consensus 286 -------------------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~--~~SpDG~ 343 (429)
T PRK03629 286 -------------------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDA--DVSSDGK 343 (429)
T ss_pred -------------------CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCE--EECCCCC
Confidence 1123455677777766655543 3 355556665543 2333222222233 7899999
Q ss_pred EEEEecCC---CcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCc---EEEEEcccc
Q psy17863 266 QIFCGSSD---GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNN---VKLWTAEED 327 (341)
Q Consensus 266 ~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~---i~vw~~~~~ 327 (341)
+++..+.+ ..|++||+.+++. ..+.. ........|+|||+.|+.++ ++. +.+++++..
T Consensus 344 ~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~---~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 344 FMVMVSSNGGQQHIAKQDLATGGV-QVLTD---TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred EEEEEEccCCCceEEEEECCCCCe-EEeCC---CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 98776543 3588899877764 33331 12234678999999999888 654 667777543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-14 Score=120.99 Aligned_cols=200 Identities=10% Similarity=0.079 Sum_probs=133.3
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeC---CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEE-EecCCCc--
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGS---DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKS-- 78 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~-- 78 (341)
..+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++. ..+..+.+.+...+|+|||+.|+ +.+.++.
T Consensus 193 ~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 271 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTD 271 (435)
T ss_pred CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCce
Confidence 34567778889999999999999987764 46899999988765 34555666788899999999875 4455554
Q ss_pred EEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecC-CC--eEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEE
Q psy17863 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ-DN--TVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIY 155 (341)
Q Consensus 79 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 155 (341)
|.+||+.+++. ..+..+........|+|||+.|+..+. +| .|.++|+.++
T Consensus 272 Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~-------------------------- 324 (435)
T PRK05137 272 IYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS-------------------------- 324 (435)
T ss_pred EEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC--------------------------
Confidence 77789887765 445556666778999999998887653 22 3444443322
Q ss_pred EEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC----CceEEEEccccc-----CCCCeEEEEEccCCCEEEEe
Q psy17863 156 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG----NNVKLWTAEEDY-----GQEPIVDACFTRDCQCILTC 226 (341)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~ 226 (341)
+. ..+.. .........|+|+++.++.... ..+.+|+..... ....+....|+|||+.|+..
T Consensus 325 -------~~-~~lt~--~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~ 394 (435)
T PRK05137 325 -------NP-RRISF--GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFF 394 (435)
T ss_pred -------Ce-EEeec--CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEE
Confidence 11 11111 1122455678899988876542 246677764322 22245678999999988765
Q ss_pred ecC------CeEEEEeccccce
Q psy17863 227 STD------ECLRLFDKATGEL 242 (341)
Q Consensus 227 ~~d------~~i~i~d~~~~~~ 242 (341)
+.+ ..+.++|+..+..
T Consensus 395 ~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 395 RQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EccCCCCCcceEEEEECCCCce
Confidence 443 3577888765443
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-14 Score=109.84 Aligned_cols=232 Identities=13% Similarity=0.214 Sum_probs=153.2
Q ss_pred cceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecc-cCccEEEEEEcCC-CcEEEEecCCCeEEEEEecCCCCcC
Q psy17863 56 HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE-HASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSHHP 133 (341)
Q Consensus 56 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~ 133 (341)
-.+..++|++.-..++++..|-.|++|+-.. ++...++. ....|++++|-|. +..|+.|+. +-|.+|.........
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 3567789998767788999999999999665 55555543 4568999999994 456666665 458899865422100
Q ss_pred eEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc-----
Q psy17863 134 IQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY----- 206 (341)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~----- 206 (341)
. .++ .-+......+ ...+...|+++.|.++|..++.++ +..+.+||.+.+.
T Consensus 177 r------------------~~~---~~s~~~~qvl-~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~ 234 (445)
T KOG2139|consen 177 R------------------NIR---MMSTHHLQVL-QDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI 234 (445)
T ss_pred c------------------ccc---cccccchhhe-eCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc
Confidence 0 000 0011111122 223447899999999999998887 4789999998865
Q ss_pred --CCCCeEEEEEccCCCEEEEeecCCeEEEEecc-ccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 207 --GQEPIVDACFTRDCQCILTCSTDECLRLFDKA-TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 207 --~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
..+.+.-+.|||||.+|++++-|+..++|+.. +....+-.- ..+.+... +|+|+|++|+.... |.-++|.+.-
T Consensus 235 ~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqta--cWspcGsfLLf~~s-gsp~lysl~f 310 (445)
T KOG2139|consen 235 PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTA--CWSPCGSFLLFACS-GSPRLYSLTF 310 (445)
T ss_pred ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeee--eecCCCCEEEEEEc-CCceEEEEee
Confidence 45678899999999999999999999999543 333322222 23355555 89999998654432 2334444321
Q ss_pred CCc---------------eEEEE-------eeeeccceEEEEEcCCCcEEEEeC
Q psy17863 284 SSQ---------------ISTLI-------HSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 284 ~~~---------------~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
.+. +..+. ...-.+++.+++|.|.|.+||+.-
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 110 00000 001146789999999999999987
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-14 Score=121.94 Aligned_cols=218 Identities=10% Similarity=0.066 Sum_probs=137.4
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCC---CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEE-EecCCCcEEE
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSD---KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKSVIL 81 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i 81 (341)
.+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+.|+ +.+.+|...+
T Consensus 188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 266 (427)
T PRK02889 188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQI 266 (427)
T ss_pred ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceE
Confidence 34556678889999999999999877643 469999998886543 333445567899999999886 4567777666
Q ss_pred EEC--CCCceeeeecccCccEEEEEEcCCCcEEEEecC-CCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 82 WEV--TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 82 w~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
|.+ ..++ ...+..+........|+|||+.|+..+. +|...+|.+....
T Consensus 267 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~---------------------------- 317 (427)
T PRK02889 267 YTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG---------------------------- 317 (427)
T ss_pred EEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC----------------------------
Confidence 654 4443 4455555555677899999998876553 4555555543211
Q ss_pred ccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-C---ceEEEEccccc-----CCCCeEEEEEccCCCEEEEeecC
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-N---NVKLWTAEEDY-----GQEPIVDACFTRDCQCILTCSTD 229 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~i~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d 229 (341)
++ ...+... ........|+|+|+.++.... + .+.+|++.... .........|+|||+.|+..+.+
T Consensus 318 ---g~-~~~lt~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 318 ---GA-AQRVTFT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred ---Cc-eEEEecC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEec
Confidence 10 0001000 111234678888888876543 2 57888876543 12234567899999988877654
Q ss_pred C---eEEEEeccccceeeeecCcccceeEEEEEeCC
Q psy17863 230 E---CLRLFDKATGELLEEYKGHKSGDFRIECCLDS 262 (341)
Q Consensus 230 ~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (341)
+ .+.+.+. +++....+..+.+.+... +|+|
T Consensus 392 ~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p--~wsp 424 (427)
T PRK02889 392 GGRSVLAAVSS-DGRIKQRLSVQGGDVREP--SWGP 424 (427)
T ss_pred CCCEEEEEEEC-CCCceEEeecCCCCCCCC--ccCC
Confidence 4 3555566 355555555454444444 4554
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.7e-15 Score=118.56 Aligned_cols=252 Identities=16% Similarity=0.234 Sum_probs=176.4
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEE-EEeCCCeEEEEcCCCcceeeE----------------------------ecCcc-
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCL-TCGSDKKIKLWNPYRNLLLKT----------------------------YGGHA- 55 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~-t~~~dg~i~iw~~~~~~~~~~----------------------------~~~~~- 55 (341)
++.|. |...-+.|..+|||+|++ ||.....|++||+.+..+... +.-|.
T Consensus 45 iQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 45 IQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred HHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 34444 778889999999999765 666788999999765432111 00010
Q ss_pred ----------cceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEE
Q psy17863 56 ----------HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125 (341)
Q Consensus 56 ----------~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 125 (341)
..-..++++.-..-|+.++....|+-++++.|+.+..+....+.++++..++...+|++|+.+|.|..||
T Consensus 124 ~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 124 YGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred cCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 0012223322122244444456688899999999999988889999999999888999999999999999
Q ss_pred ecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccc
Q psy17863 126 VKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEE 204 (341)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~ 204 (341)
.+...... ..+.... +...........|+++.|+.+|-.+++++. |.+.+||++.
T Consensus 204 pR~ksrv~----------------------~l~~~~~--v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 204 PRDKSRVG----------------------TLDAASS--VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred chhhhhhe----------------------eeecccc--cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEccc
Confidence 98765211 1111111 111112223345899999999999988875 9999999987
Q ss_pred cc--------CCCCeEEEEEccC--CCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCC
Q psy17863 205 DY--------GQEPIVDACFTRD--CQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG 274 (341)
Q Consensus 205 ~~--------~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 274 (341)
.. ...+|..+.|.+. ++.+++. ....++|||-.+|+....+... ..+..+ |+-|++.+++++-.++
T Consensus 260 ~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt-~~lND~--C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 260 SKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT-SDLNDF--CFVPGSGMFFTANESS 335 (703)
T ss_pred CCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc-CCcCce--eeecCCceEEEecCCC
Confidence 54 5678999999775 4445544 4568999999999998887743 346655 7889999999999998
Q ss_pred cEEEEeeeCCCc
Q psy17863 275 KIYKWQLVDSSQ 286 (341)
Q Consensus 275 ~i~iwd~~~~~~ 286 (341)
.+..|=+....+
T Consensus 336 ~m~~yyiP~LGP 347 (703)
T KOG2321|consen 336 KMHTYYIPSLGP 347 (703)
T ss_pred cceeEEccccCC
Confidence 888877665433
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-14 Score=120.86 Aligned_cols=326 Identities=11% Similarity=0.138 Sum_probs=216.9
Q ss_pred CCceeeeEEeeeCCcEEEEEEccCC------------CEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEec---
Q psy17863 1 MEYTCVQTIDCKQGAIRAVRFNVDG------------SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC--- 65 (341)
Q Consensus 1 ~~~~~~~~l~~h~~~v~~~~~~~~~------------~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~--- 65 (341)
|.+|.++.++.|+..|+.+.|.|-. -+||++...|.|.+||...+..+..+..|..++..+.|-+
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 4578899999999999999998731 2577788899999999999999999999999999999976
Q ss_pred CC-CEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecC---------------
Q psy17863 66 DS-SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKS--------------- 128 (341)
Q Consensus 66 ~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~--------------- 128 (341)
+. ..|++-.....+.+|+..+|+....+........|+.+.| |.+.+..-+..|.+.+-+.-.
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~s 202 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITS 202 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEec
Confidence 33 4566767778999999999999888877667778888888 666666555566655544221
Q ss_pred CC----------------------------------------------------------------------CcCeEEee
Q psy17863 129 RS----------------------------------------------------------------------HHPIQCCL 138 (341)
Q Consensus 129 ~~----------------------------------------------------------------------~~~~~~~~ 138 (341)
.. ...+..+.
T Consensus 203 d~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP 282 (1062)
T KOG1912|consen 203 DHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLP 282 (1062)
T ss_pred CccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEecc
Confidence 10 00112223
Q ss_pred cCCCceEEEeeccCeEEEEEccCCcceeee-----E----------eeecCceEEEEEECCCCc-eE-EEeCCCceEEEE
Q psy17863 139 DSKDSQIFCGSSDGKIYKWQLVDSSQISTL-----I----------HSVGKAVVNSLCSHPTRK-HI-MSACGNNVKLWT 201 (341)
Q Consensus 139 ~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~-----~----------~~~~~~~~~~~~~~~~~~-~~-~~~~~~~i~~~~ 201 (341)
.+..+.+++...+|.+.+|-.+........ . .......+......|... .+ +..+++...+|.
T Consensus 283 ~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~ 362 (1062)
T KOG1912|consen 283 DPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQ 362 (1062)
T ss_pred CCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHh
Confidence 344457889999999999876542211111 0 000111122223333311 11 112234555555
Q ss_pred ccccc--------------------------------------CCCCeEEEEEc-----------cCC-------CEEEE
Q psy17863 202 AEEDY--------------------------------------GQEPIVDACFT-----------RDC-------QCILT 225 (341)
Q Consensus 202 ~~~~~--------------------------------------~~~~i~~~~~~-----------~~~-------~~l~~ 225 (341)
+..+. |....++.... |.+ .+++.
T Consensus 363 l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAv 442 (1062)
T KOG1912|consen 363 LSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAV 442 (1062)
T ss_pred hhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEe
Confidence 54211 22222222222 222 35788
Q ss_pred eecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEE---------EecCCCcEEEEeeeCCCceEEE-Eeeee
Q psy17863 226 CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIF---------CGSSDGKIYKWQLVDSSQISTL-IHSVG 295 (341)
Q Consensus 226 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~dg~i~iwd~~~~~~~~~~-~~~~~ 295 (341)
|+..|+|.++|+.++..-+.+..|...|.++. |-...+++- +|+.-+.+.+-|+++|....-- .....
T Consensus 443 GT~sGTV~vvdvst~~v~~~fsvht~~Vkgle--W~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~d 520 (1062)
T KOG1912|consen 443 GTNSGTVDVVDVSTNAVAASFSVHTSLVKGLE--WLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPD 520 (1062)
T ss_pred ecCCceEEEEEecchhhhhhhcccccceeeee--eccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCC
Confidence 99999999999999999999999999998884 444333322 3333456888899988543211 12256
Q ss_pred ccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 296 KAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 296 ~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
..+|+.+..|.-++||+..- +.-+.+||+.+..
T Consensus 521 espI~~irvS~~~~yLai~Fr~~plEiwd~kt~~ 554 (1062)
T KOG1912|consen 521 ESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLR 554 (1062)
T ss_pred cCcceeeeecccCceEEEEecccchHHHhhccch
Confidence 78999999999999999999 9999999996543
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-12 Score=98.83 Aligned_cols=277 Identities=10% Similarity=0.163 Sum_probs=181.0
Q ss_pred CCeEEEEcCCCcce-e--eEecCcccceeEEEEecCCCEEEEecC---CCcEEEEECCC--Ccee--eeecccCccEEEE
Q psy17863 34 DKKIKLWNPYRNLL-L--KTYGGHAHEVNDATAACDSSQIASGAS---DKSVILWEVTT--GQPV--RRWREHASKVTCV 103 (341)
Q Consensus 34 dg~i~iw~~~~~~~-~--~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~--~~~~--~~~~~~~~~v~~~ 103 (341)
+.-|++|++.+..- + ..+-...+..+-++|+|++++|.++.. +|.|..|.++. |+.. ........+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 45699999873221 1 112246678899999999999988755 47788888765 4432 2222233444889
Q ss_pred EEcCCCcEEEEecC-CCeEEEEEecCC-CCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEE
Q psy17863 104 KFNEDSSVVISGSQ-DNTVMMWDVKSR-SHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLC 181 (341)
Q Consensus 104 ~~~~~~~~l~~~~~-d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 181 (341)
++++++++++++.. .|.|.++-++.. .......... + .+.-... ......+....
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~------------------h--~g~~p~~---rQ~~~h~H~a~ 151 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK------------------H--TGSGPHE---RQESPHVHSAN 151 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeee------------------c--CCCCCCc---cccCCccceee
Confidence 99999999988865 477888877652 2111100000 0 0000000 01123377888
Q ss_pred ECCCCceEEEeCC--CceEEEEccccc----------CCCCeEEEEEccCCCEEEEeec-CCeEEEEecccc-ceeeeec
Q psy17863 182 SHPTRKHIMSACG--NNVKLWTAEEDY----------GQEPIVDACFTRDCQCILTCST-DECLRLFDKATG-ELLEEYK 247 (341)
Q Consensus 182 ~~~~~~~~~~~~~--~~i~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~-~~~~~~~ 247 (341)
+.|+++++++..- +.+.+|++..+. ....-+.+.|+|++++..+.++ +++|.+|..... ..+.+++
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee
Confidence 9999999998873 789999998543 3455688999999999876665 889999988763 2222222
Q ss_pred -------CcccceeEEEEEeCCCCCEEEEecC-CCcEEEEeeeCC-CceEEEE-eeeeccceEEEEEcCCCcEEEEeC--
Q psy17863 248 -------GHKSGDFRIECCLDSKDSQIFCGSS-DGKIYKWQLVDS-SQISTLI-HSVGKAVVNSLCSHPTRKHIMSAC-- 315 (341)
Q Consensus 248 -------~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~-- 315 (341)
...+....-++.++++|++|.++.. ...|.+|.+... ..+.... ...+....+...|+|.+++|+++.
T Consensus 232 ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~ 311 (346)
T COG2706 232 TIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQK 311 (346)
T ss_pred eeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccC
Confidence 2233344555689999999998743 347888887653 3333332 223444578999999999999998
Q ss_pred CCcEEEEEcccccCCccc
Q psy17863 316 GNNVKLWTAEEDYGQAGL 333 (341)
Q Consensus 316 d~~i~vw~~~~~~~~~~~ 333 (341)
+..|.+|..+.....-.+
T Consensus 312 sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 312 SDNITVFERDKETGRLTL 329 (346)
T ss_pred CCcEEEEEEcCCCceEEe
Confidence 678999999876655443
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.8e-12 Score=102.44 Aligned_cols=259 Identities=11% Similarity=0.148 Sum_probs=161.4
Q ss_pred CCcEEEEEEccCCCEEEEEeC----CCeEEEEcCCCc--c--eeeEecCcccceeEEEEecCCCEEEEecC-CCcEEEEE
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGS----DKKIKLWNPYRN--L--LLKTYGGHAHEVNDATAACDSSQIASGAS-DKSVILWE 83 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~----dg~i~iw~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~ 83 (341)
......++++|++++|.+... ++.|..|.+... + .+.+..........++++|++++|+++.. +|.|.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 345677899999999998876 578999987653 2 33333323345567899999999998864 89999999
Q ss_pred CCC-Cceeee---ec----------ccCccEEEEEEcCCCcEEEEecC-CCeEEEEEecCCCCcCeEEeecCCCceEEEe
Q psy17863 84 VTT-GQPVRR---WR----------EHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCG 148 (341)
Q Consensus 84 ~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 148 (341)
+.. +..... +. .......++.++|+++++++... ...|.+|++......
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~---------------- 179 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK---------------- 179 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T----------------
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce----------------
Confidence 987 333221 11 12345678999999998877643 346777776543310
Q ss_pred eccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC--CceEEEEccccc-----------------CCC
Q psy17863 149 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEEDY-----------------GQE 209 (341)
Q Consensus 149 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~-----------------~~~ 209 (341)
+ .....+ ........+.+.|+|+++++.+... +.|.++++.... ...
T Consensus 180 -----l--------~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 245 (345)
T PF10282_consen 180 -----L--------TPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN 245 (345)
T ss_dssp -----E--------EEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred -----E--------EEeecc-ccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence 0 001111 1123345789999999998877764 778888877211 122
Q ss_pred CeEEEEEccCCCEEEEeec-CCeEEEEecc--ccce--eeeecCcccceeEEEEEeCCCCCEEEEec-CCCcEEEEeee-
Q psy17863 210 PIVDACFTRDCQCILTCST-DECLRLFDKA--TGEL--LEEYKGHKSGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLV- 282 (341)
Q Consensus 210 ~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~- 282 (341)
....+.++|||++|+++.. .+.|.+|++. ++++ +..+..... ....++++|+|++|+++. .++.|.+|++.
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 5778999999999887664 5679999983 2333 333332222 233448999999988776 56789999875
Q ss_pred -CCCceEEEEeeeeccceEEEEE
Q psy17863 283 -DSSQISTLIHSVGKAVVNSLCS 304 (341)
Q Consensus 283 -~~~~~~~~~~~~~~~~v~~~~~ 304 (341)
+|.+...-.. ..-....|+.|
T Consensus 324 ~tG~l~~~~~~-~~~~~p~ci~f 345 (345)
T PF10282_consen 324 DTGKLTPVGSS-VPIPSPVCIVF 345 (345)
T ss_dssp TTTEEEEEEEE-EESSSEEEEEE
T ss_pred CCCcEEEeccc-ccCCCCEEEeC
Confidence 4443333221 23345566655
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.4e-13 Score=100.90 Aligned_cols=220 Identities=13% Similarity=0.222 Sum_probs=141.5
Q ss_pred CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECC-CCceeeeeccc--CccEEEEEEcCCCcE
Q psy17863 35 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT-TGQPVRRWREH--ASKVTCVKFNEDSSV 111 (341)
Q Consensus 35 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~--~~~v~~~~~~~~~~~ 111 (341)
..|.|||-...+++.++. ...+|.++.+.++ .|++.- .+.|.||... +.+.++.+... .....+++-+.+..+
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 579999977778888887 7789999999865 555554 4679999987 44555554321 222333322223333
Q ss_pred EEEec-CCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEE
Q psy17863 112 VISGS-QDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 190 (341)
Q Consensus 112 l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (341)
|+.-+ .-|.|.+-|+. ..+.-.....
T Consensus 151 LafPg~k~GqvQi~dL~---------------------------------~~~~~~p~~I-------------------- 177 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLA---------------------------------STKPNAPSII-------------------- 177 (346)
T ss_pred EEcCCCccceEEEEEhh---------------------------------hcCcCCceEE--------------------
Confidence 33322 23444444443 3222100000
Q ss_pred EeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCe-EEEEeccccceeeeecCcc--cceeEEEEEeCCCCCEE
Q psy17863 191 SACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDEC-LRLFDKATGELLEEYKGHK--SGDFRIECCLDSKDSQI 267 (341)
Q Consensus 191 ~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l 267 (341)
..|...|.+++++-+|..+|+++..|+ |||||..+|+.+.+++... ..++++ +|+|+..+|
T Consensus 178 --------------~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i--aFSp~~s~L 241 (346)
T KOG2111|consen 178 --------------NAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI--AFSPNSSWL 241 (346)
T ss_pred --------------EcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE--EeCCCccEE
Confidence 115678999999999999999999998 8999999999999997544 345666 999999999
Q ss_pred EEecCCCcEEEEeeeCCCceEE-----------EE-----------eeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEc
Q psy17863 268 FCGSSDGKIYKWQLVDSSQIST-----------LI-----------HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 268 ~~~~~dg~i~iwd~~~~~~~~~-----------~~-----------~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~ 324 (341)
+++++.|++.|+.++....-.. ++ -+-..++..-++|..+.+.++..+ ||.-+=+.+
T Consensus 242 avsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f 321 (346)
T KOG2111|consen 242 AVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKF 321 (346)
T ss_pred EEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEe
Confidence 9999999999999876331111 00 001234555667777744455555 887665554
Q ss_pred ccc
Q psy17863 325 EED 327 (341)
Q Consensus 325 ~~~ 327 (341)
...
T Consensus 322 ~~~ 324 (346)
T KOG2111|consen 322 DPK 324 (346)
T ss_pred ccc
Confidence 433
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-14 Score=109.11 Aligned_cols=266 Identities=14% Similarity=0.197 Sum_probs=175.3
Q ss_pred cccceeEEEEecCCCEEEEecCCCcEEEEECCCCc-----eeeeecccC------------ccEEEEEEcCC--CcEEEE
Q psy17863 54 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ-----PVRRWREHA------------SKVTCVKFNED--SSVVIS 114 (341)
Q Consensus 54 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~--~~~l~~ 114 (341)
...-|.++.|...|.+|++|..+|.|.++.-+... ....++.|. ..|..+.|.++ ...++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34568999999999999999999999999744322 122333332 46788999874 446777
Q ss_pred ecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCC-----cceeeeEeeecCceEEEEEECCCCceE
Q psy17863 115 GSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS-----SQISTLIHSVGKAVVNSLCSHPTRKHI 189 (341)
Q Consensus 115 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (341)
.+.|.+|++|.+.......-... .+... ..+.-..+++--+... ...+......+...++++.++.++..+
T Consensus 104 stNdktiKlWKi~er~~k~~~~~-~~~~~---~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~ 179 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYN-LPEEG---PPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF 179 (433)
T ss_pred ecCCcceeeeeeecccccccccc-ccccC---CCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence 78899999999876543220000 00000 0000011111111100 011122234456679999999999999
Q ss_pred EEeCCCceEEEEcccccC---------------CCCeEEEEEccC-CCEEEEeecCCeEEEEecccccee----eeec--
Q psy17863 190 MSACGNNVKLWTAEEDYG---------------QEPIVDACFTRD-CQCILTCSTDECLRLFDKATGELL----EEYK-- 247 (341)
Q Consensus 190 ~~~~~~~i~~~~~~~~~~---------------~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~----~~~~-- 247 (341)
+++.+=.|.+|+++...+ ..-|++..|+|. .+.++-.+..|+|++-|++...+. +.+.
T Consensus 180 lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 180 LSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred eeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence 999999999999876442 234677889995 677888889999999999853221 1111
Q ss_pred ----------CcccceeEEEEEeCCCCCEEEEecCCCcEEEEee-eCCCceEEEEeeeec------------c---ceEE
Q psy17863 248 ----------GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL-VDSSQISTLIHSVGK------------A---VVNS 301 (341)
Q Consensus 248 ----------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~------------~---~v~~ 301 (341)
.--..|..+ .|+++|+++++-.. -+|++||+ ...+++.+.+ .|. . .-..
T Consensus 260 edp~~rsffseiIsSISDv--KFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~--vh~~lr~kLc~lYEnD~IfdKFe 334 (433)
T KOG1354|consen 260 EDPSSRSFFSEIISSISDV--KFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYP--VHEYLRSKLCSLYENDAIFDKFE 334 (433)
T ss_pred cCCcchhhHHHHhhhhhce--EEccCCcEEEEecc-ceeEEEeccccCCcceEEe--ehHhHHHHHHHHhhccchhheeE
Confidence 111234444 79999999998754 47999999 5567777666 332 1 2245
Q ss_pred EEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 302 LCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 302 ~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
++|+.++.++++|+ .+.++++++..+.
T Consensus 335 c~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 335 CSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EEEcCCcceEecccccceEEEecCCCCc
Confidence 78999999999999 9999999976553
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.5e-14 Score=117.42 Aligned_cols=286 Identities=13% Similarity=0.143 Sum_probs=190.9
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCc---------------ceeeEecCcccceeEEEEecCCCEEEEecCCC
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN---------------LLLKTYGGHAHEVNDATAACDSSQIASGASDK 77 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 77 (341)
.....|++|+.+..++|.|+.||.+++-.+.+. ..-+++.+|.+.|..+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 456789999999999999999999999976532 12345789999999999999999999999999
Q ss_pred cEEEEECCCCceeeee--cccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------CcCeEEeecCCCceEEE
Q psy17863 78 SVILWEVTTGQPVRRW--REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCLDSKDSQIFC 147 (341)
Q Consensus 78 ~i~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~~~~~~ 147 (341)
.|.+|-+-.|.....+ ....+-|.+++|+.+|..+.....||.|.+=.++... .....+....+...++.
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf 173 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALF 173 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHh
Confidence 9999999888655443 2356789999999999999999999987765554432 01111222222233344
Q ss_pred eeccCeEEEEEccCCcceeeeEeeecCceEEEE-EECCCCceEEEeCCCceEEEEcccccCCCCeEEEEE--------cc
Q psy17863 148 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL-CSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACF--------TR 218 (341)
Q Consensus 148 ~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~--------~~ 218 (341)
+-.+|.+.++|....-... +.. ...|+.- .++.- +..|..+.| -|
T Consensus 174 ~~ange~hlydnqgnF~~K-l~~---~c~Vn~tg~~s~~----------------------~~kia~i~w~~g~~~~v~p 227 (1189)
T KOG2041|consen 174 KKANGETHLYDNQGNFERK-LEK---DCEVNGTGIFSNF----------------------PTKIAEIEWNTGPYQPVPP 227 (1189)
T ss_pred hhcCCcEEEecccccHHHh-hhh---ceEEeeeeeecCC----------------------CccccceeeccCccccCCC
Confidence 4445555555543221111 000 0001100 01111 111223332 35
Q ss_pred CCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCC---------CcEEEEeeeCCCceEE
Q psy17863 219 DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD---------GKIYKWQLVDSSQIST 289 (341)
Q Consensus 219 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~ 289 (341)
+...++++-.+|.+.+..-.+......+... ...+...|+++|..|+.++.+ +.|.++. .-|+.+.+
T Consensus 228 drP~lavcy~nGr~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gt 303 (1189)
T KOG2041|consen 228 DRPRLAVCYANGRMQIMRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGT 303 (1189)
T ss_pred CCCEEEEEEcCceehhhhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEE
Confidence 7888999999999988865544333333221 223344799999999988754 3566665 46778888
Q ss_pred EEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEcccccCC
Q psy17863 290 LIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQ 330 (341)
Q Consensus 290 ~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~~~~ 330 (341)
++ .....|++++|-..|-.+|.+-|+.|++=++++++.-
T Consensus 304 lk--vpg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ykW 342 (1189)
T KOG2041|consen 304 LK--VPGSCITGLSWEGTGLRIAIAVDSFIYFANIRPEYKW 342 (1189)
T ss_pred Ee--cCCceeeeeEEcCCceEEEEEecceEEEEeecccceE
Confidence 88 6678899999998888888887888888777776543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.8e-14 Score=119.02 Aligned_cols=216 Identities=14% Similarity=0.078 Sum_probs=131.5
Q ss_pred CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC---CCcEEEEECCCCceeeeecccCccEEEEEEcCCCcE
Q psy17863 35 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS---DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSV 111 (341)
Q Consensus 35 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 111 (341)
..|.+||... ...+.+..+...+.+.+|+||++.|+..+. +..|.+||+.+++... +....+......|+|||+.
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 4699999754 444556667788999999999999988764 3469999998876533 3333445567899999987
Q ss_pred EEE-ecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEE
Q psy17863 112 VIS-GSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 190 (341)
Q Consensus 112 l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (341)
|+. .+.+|. ..|++||+.+++.. .+.. +
T Consensus 262 l~~~~s~~g~-------------------------------~~Iy~~d~~~g~~~-~lt~--~----------------- 290 (433)
T PRK04922 262 LALTLSRDGN-------------------------------PEIYVMDLGSRQLT-RLTN--H----------------- 290 (433)
T ss_pred EEEEEeCCCC-------------------------------ceEEEEECCCCCeE-ECcc--C-----------------
Confidence 764 344432 12334444332211 1110 0
Q ss_pred EeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeec-CC--eEEEEeccccceeeeecCcccceeEEEEEeCCCCCEE
Q psy17863 191 SACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCST-DE--CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQI 267 (341)
Q Consensus 191 ~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (341)
.......+|+|||+.++..+. +| .|+++|+.+++... +..+...... .+|+|+|+++
T Consensus 291 -----------------~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~--~~~SpDG~~I 350 (433)
T PRK04922 291 -----------------FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNAR--ASVSPDGKKI 350 (433)
T ss_pred -----------------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccC--EEECCCCCEE
Confidence 111234567777776665543 33 36666776655422 2222222222 3899999998
Q ss_pred EEecCCC---cEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-C-C--cEEEEEcccc
Q psy17863 268 FCGSSDG---KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G-N--NVKLWTAEED 327 (341)
Q Consensus 268 ~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~--~i~vw~~~~~ 327 (341)
+..+.++ .|.+||+.+++.. .+. +........|+|||++++..+ + + .|.+++++..
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~~-~Lt---~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSVR-TLT---PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEEECCCCceeEEEEECCCCCeE-ECC---CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 8765433 6999998777654 343 222345679999999887766 2 3 4677777543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-14 Score=107.23 Aligned_cols=111 Identities=16% Similarity=0.362 Sum_probs=89.2
Q ss_pred CCcEEEEEEccCCCEEEEE--eCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC---CCcEEEEECCCC
Q psy17863 13 QGAIRAVRFNVDGSYCLTC--GSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS---DKSVILWEVTTG 87 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~--~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~ 87 (341)
.++|.+++|+|+|+.||+. ..++.|.+||++ ++.+..+. ...++.+.|+|+|++|++++. .|.+.+||.++.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK 135 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 4579999999999987654 457899999986 66666664 467789999999999999864 467999999988
Q ss_pred ceeeeecccCccEEEEEEcCCCcEEEEecC------CCeEEEEEecC
Q psy17863 88 QPVRRWREHASKVTCVKFNEDSSVVISGSQ------DNTVMMWDVKS 128 (341)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~ 128 (341)
+.+.... |. .++.++|+|+|++++++.. |+.++||+...
T Consensus 136 ~~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 136 KKISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 8887765 33 4789999999999999874 56667777653
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.3e-14 Score=121.32 Aligned_cols=268 Identities=17% Similarity=0.201 Sum_probs=178.1
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec------CcccceeEEEEecCCCEEEEecCCCcEEEEECCC
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG------GHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 86 (341)
-+++++.++-. ++|++|. ...|.+||..++..+..+. .|... ... .-.+.+++++..-+.+..=+..
T Consensus 7 ~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e--~~~-~l~~~~~v~~~~~~~v~~~~~~- 79 (967)
T KOG0974|consen 7 LGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGE--GKV-KLLSGKIVTCAKSDEVYVKEAS- 79 (967)
T ss_pred cccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhccccccccc--ccc-eeccceEEEEEeecceeecchh-
Confidence 34555555544 5677655 5579999998887655443 33000 000 0123345555443333332211
Q ss_pred CceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC-------------cCeEEeecCCCceEEEeeccCe
Q psy17863 87 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH-------------HPIQCCLDSKDSQIFCGSSDGK 153 (341)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~g~ 153 (341)
.+. +..-...+....+..+.+.++.++.++.+.+||...... ...........-++++|+.-+.
T Consensus 80 ~~~---~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~ 156 (967)
T KOG0974|consen 80 NQI---IERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGE 156 (967)
T ss_pred hhh---hhhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccccc
Confidence 111 122233444455666778889999999999999876431 0011112233346777777788
Q ss_pred EEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEE
Q psy17863 154 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLR 233 (341)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 233 (341)
|.+|+....+....+ ..|++.|.++.++.||+++++.+.|.++|
T Consensus 157 iivW~~~~dn~p~~l------------------------------------~GHeG~iF~i~~s~dg~~i~s~SdDRsiR 200 (967)
T KOG0974|consen 157 IIVWKPHEDNKPIRL------------------------------------KGHEGSIFSIVTSLDGRYIASVSDDRSIR 200 (967)
T ss_pred EEEEeccccCCccee------------------------------------cccCCceEEEEEccCCcEEEEEecCccee
Confidence 888876522211111 12577899999999999999999999999
Q ss_pred EEeccccceee-eecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeee-ccceEEEEEcCCCcEE
Q psy17863 234 LFDKATGELLE-EYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG-KAVVNSLCSHPTRKHI 311 (341)
Q Consensus 234 i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l 311 (341)
+|++.+.+... ..-+|+..++.+ ++.|+ .+++++.|-+.++|+. ++..+..+. .| ...+..++..++...+
T Consensus 201 lW~i~s~~~~~~~~fgHsaRvw~~--~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~--~h~g~~iw~~~~~~~~~~~ 273 (967)
T KOG0974|consen 201 LWPIDSREVLGCTGFGHSARVWAC--CFLPN--RIITVGEDCTCRVWGV-NGTQLEVYD--EHSGKGIWKIAVPIGVIIK 273 (967)
T ss_pred eeecccccccCcccccccceeEEE--Eeccc--eeEEeccceEEEEEec-ccceehhhh--hhhhcceeEEEEcCCceEE
Confidence 99999988766 667899988877 88887 9999999999999974 555555665 34 4579999999999999
Q ss_pred EEeC-CCcEEEEEcccccCCccc
Q psy17863 312 MSAC-GNNVKLWTAEEDYGQAGL 333 (341)
Q Consensus 312 ~~~~-d~~i~vw~~~~~~~~~~~ 333 (341)
+|++ |+.+++|++........+
T Consensus 274 vT~g~Ds~lk~~~l~~r~~e~~~ 296 (967)
T KOG0974|consen 274 VTGGNDSTLKLWDLNGRGLEGHV 296 (967)
T ss_pred EeeccCcchhhhhhhccccccce
Confidence 9999 999999998876544433
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.4e-13 Score=113.03 Aligned_cols=225 Identities=13% Similarity=0.081 Sum_probs=136.0
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCC---CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEE-ecCCC--cE
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSD---KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIAS-GASDK--SV 79 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i 79 (341)
.+.+..+...+...+|+|||+.|+..+.+ ..|.+|++.+++... +....+.+....|+|||+.|+. ...+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 34566677889999999999999876643 469999998876533 3333445567899999998874 44444 58
Q ss_pred EEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecC-CCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 80 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
.+||+.+++.. .+..+........|+||++.++..+. +|.. .|++++
T Consensus 270 y~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~-------------------------------~iy~~d 317 (430)
T PRK00178 270 YVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKP-------------------------------QIYKVN 317 (430)
T ss_pred EEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCc-------------------------------eEEEEE
Confidence 88899877654 34445555667889999988776543 2221 222333
Q ss_pred ccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecC-C--eEEEE
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTD-E--CLRLF 235 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~i~i~ 235 (341)
+.+++.. .+... ........|+|+|+.++..+.+ + .|.++
T Consensus 318 ~~~g~~~-~lt~~------------------------------------~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~ 360 (430)
T PRK00178 318 VNGGRAE-RVTFV------------------------------------GNYNARPRLSADGKTLVMVHRQDGNFHVAAQ 360 (430)
T ss_pred CCCCCEE-EeecC------------------------------------CCCccceEECCCCCEEEEEEccCCceEEEEE
Confidence 3222211 01000 0001124567777766655433 2 58888
Q ss_pred eccccceeeeecCcccceeEEEEEeCCCCCEEEEecCC---CcEEEEeeeCCCceEEEEeeeeccceEEEEEcCC
Q psy17863 236 DKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD---GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 236 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
|+.+++.. .+.. ...... ..|+|+|+.++..+.+ ..++++++ ++.....+. .+.+.+...+|+|-
T Consensus 361 dl~tg~~~-~lt~-~~~~~~--p~~spdg~~i~~~~~~~g~~~l~~~~~-~g~~~~~l~--~~~g~~~~p~ws~~ 428 (430)
T PRK00178 361 DLQRGSVR-ILTD-TSLDES--PSVAPNGTMLIYATRQQGRGVLMLVSI-NGRVRLPLP--TAQGEVREPSWSPY 428 (430)
T ss_pred ECCCCCEE-EccC-CCCCCC--ceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECc--CCCCCcCCCccCCC
Confidence 98877543 2321 111112 2789999998766543 34666675 344444555 34556777788873
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-13 Score=109.30 Aligned_cols=280 Identities=13% Similarity=0.191 Sum_probs=189.0
Q ss_pred cEEEEEEccCCCEEEEEe-----C-----CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEEC
Q psy17863 15 AIRAVRFNVDGSYCLTCG-----S-----DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 84 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~-----~-----dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 84 (341)
.+.++.|+|-|.+|.|-- . .-.+.+|+++++.....+......-.+..|++|..+. +--..+.+.+|++
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~-arlv~nev~f~~~ 153 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLA-ARLVSNEVQFYDL 153 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhh-hhhhcceEEEEec
Confidence 688999999999988621 1 2457899999866655554333333688999887543 3333467999998
Q ss_pred CCCceeeeecccCccEEEEEEcCC--CcEEEE-----ecCCCeEEEEEecCCCC------------cCeEEeecCCCc-e
Q psy17863 85 TTGQPVRRWREHASKVTCVKFNED--SSVVIS-----GSQDNTVMMWDVKSRSH------------HPIQCCLDSKDS-Q 144 (341)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~-----~~~d~~i~iwd~~~~~~------------~~~~~~~~~~~~-~ 144 (341)
.+.+.+.. +-|...|+.+.++|. ...+++ .+.-+.+++|....... ..++......+. .
T Consensus 154 ~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~L 232 (566)
T KOG2315|consen 154 GSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTAL 232 (566)
T ss_pred CCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceE
Confidence 77433222 336788999999985 234443 35567899998763221 112222222222 2
Q ss_pred EEEee--cc---------CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC---CceEEEEccccc----
Q psy17863 145 IFCGS--SD---------GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG---NNVKLWTAEEDY---- 206 (341)
Q Consensus 145 ~~~~~--~~---------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~---- 206 (341)
|+.++ -| .++++.++........+ ...++|.++.|+|+++-+++..+ ..+.+||++...
T Consensus 233 LvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L---~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df 309 (566)
T KOG2315|consen 233 LVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL---LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDF 309 (566)
T ss_pred EEEEEEeecCCCccccccceEEEEEecCceEEEec---CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeC
Confidence 32222 22 35777777733333222 24678999999999988887765 689999988754
Q ss_pred CCCCeEEEEEccCCCEEEEeecC---CeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecC------CCcEE
Q psy17863 207 GQEPIVDACFTRDCQCILTCSTD---ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS------DGKIY 277 (341)
Q Consensus 207 ~~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~ 277 (341)
.+++-+++-|+|.|++++.++-+ |.+.+||..+.+++..+..... .-+.|+|||+++++++. |+.++
T Consensus 310 ~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t----t~~eW~PdGe~flTATTaPRlrvdNg~K 385 (566)
T KOG2315|consen 310 PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT----TVFEWSPDGEYFLTATTAPRLRVDNGIK 385 (566)
T ss_pred CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc----eEEEEcCCCcEEEEEeccccEEecCCeE
Confidence 77888999999999999887654 7899999999888888875543 33489999999998864 78899
Q ss_pred EEeeeCCCceEEEEeeeeccceEEEEEcCC
Q psy17863 278 KWQLVDSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 278 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
||++ +|..+..-. .......+.|-|-
T Consensus 386 iwhy-tG~~l~~~~---f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 386 IWHY-TGSLLHEKM---FKSELLQVEWRPF 411 (566)
T ss_pred EEEe-cCceeehhh---hhHhHhheeeeec
Confidence 9995 666655443 1114666677653
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.8e-12 Score=110.59 Aligned_cols=118 Identities=22% Similarity=0.418 Sum_probs=105.8
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceee-EecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLK-TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 86 (341)
.+.+|.+.|.++.|+.||+++++.+.|.++++|++++.+... ..-+|+.+|..+.|.|+ ++++++.|-+.++|+. +
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~ 246 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-N 246 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec-c
Confidence 688999999999999999999999999999999999988766 56689999999999988 9999999999999975 4
Q ss_pred CceeeeecccC-ccEEEEEEcCCCcEEEEecCCCeEEEEEecC
Q psy17863 87 GQPVRRWREHA-SKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 128 (341)
Q Consensus 87 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 128 (341)
++.+..+..|. ..++.++..++...+++++.|+.+++|++..
T Consensus 247 ~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 247 GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 56666787774 5699999999999999999999999998654
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-13 Score=106.73 Aligned_cols=151 Identities=11% Similarity=0.137 Sum_probs=110.2
Q ss_pred EEEEECCCCceEEEeC-CCceEEEEccc-------ccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCc
Q psy17863 178 NSLCSHPTRKHIMSAC-GNNVKLWTAEE-------DYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGH 249 (341)
Q Consensus 178 ~~~~~~~~~~~~~~~~-~~~i~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 249 (341)
..++++++|..+++++ ++.+|+|+... ..|...|.++.|+|||++|++-+.| ..+||+.+++..+......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 7899999998888875 69999999543 2388999999999999999999999 8999999999777766533
Q ss_pred ccceeEEEEEeCCCC-----CEEEEecCCCcEEEEeeeCCCc---eEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEE
Q psy17863 250 KSGDFRIECCLDSKD-----SQIFCGSSDGKIYKWQLVDSSQ---ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVK 320 (341)
Q Consensus 250 ~~~~~~~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~ 320 (341)
...-..-.|.|+.++ ..++....-+.|+.|++..... +...+.......|++++.+++|+++|.|+ ||.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 332222234566665 2333344556677777654322 11111112345899999999999999999 99999
Q ss_pred EEEcccccC
Q psy17863 321 LWTAEEDYG 329 (341)
Q Consensus 321 vw~~~~~~~ 329 (341)
|++..+-..
T Consensus 307 i~~~~~lq~ 315 (398)
T KOG0771|consen 307 IYDAKSLQR 315 (398)
T ss_pred EEEeceeee
Confidence 999877543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.6e-13 Score=112.23 Aligned_cols=222 Identities=15% Similarity=0.170 Sum_probs=132.6
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEeCC---CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEE-ecCCCc--EEE
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCGSD---KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIAS-GASDKS--VIL 81 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~i 81 (341)
.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|||+.|+. .+.+|. |.+
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 344456677899999999999876542 368889988776432 3222334457899999998765 455664 778
Q ss_pred EECCCCceeeeecccCccEEEEEEcCCCcEEEEecC-CCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEcc
Q psy17863 82 WEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLV 160 (341)
Q Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~ 160 (341)
+|+++++.. .+..+........|+||++.|+..+. ++... |.++|+.
T Consensus 291 ~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~-------------------------------Iy~~dl~ 338 (448)
T PRK04792 291 VDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQ-------------------------------IYRVNLA 338 (448)
T ss_pred EECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCce-------------------------------EEEEECC
Confidence 888877643 34445556677899999998876543 23222 2333333
Q ss_pred CCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeec-CC--eEEEEec
Q psy17863 161 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCST-DE--CLRLFDK 237 (341)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~ 237 (341)
+++.. .+... . ......+|+|||++++..+. ++ .|.++|+
T Consensus 339 ~g~~~-~Lt~~-g-----------------------------------~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl 381 (448)
T PRK04792 339 SGKVS-RLTFE-G-----------------------------------EQNLGGSITPDGRSMIMVNRTNGKFNIARQDL 381 (448)
T ss_pred CCCEE-EEecC-C-----------------------------------CCCcCeeECCCCCEEEEEEecCCceEEEEEEC
Confidence 22211 11000 0 01122356777776665444 23 4666777
Q ss_pred cccceeeeecCcccceeEEEEEeCCCCCEEEEecC-CC--cEEEEeeeCCCceEEEEeeeeccceEEEEEcC
Q psy17863 238 ATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS-DG--KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 306 (341)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 306 (341)
.+++.. .+..... .. ...|+|+|+.|+.... +| .+++++. +++....+. .+.+.+...+|+|
T Consensus 382 ~~g~~~-~lt~~~~-d~--~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~--~~~g~~~~p~Wsp 446 (448)
T PRK04792 382 ETGAMQ-VLTSTRL-DE--SPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLP--AGQGEVKSPAWSP 446 (448)
T ss_pred CCCCeE-EccCCCC-CC--CceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECc--CCCCCcCCCccCC
Confidence 776543 2222211 11 2268999998776543 33 3677775 666666666 4556677888887
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.2e-13 Score=111.96 Aligned_cols=222 Identities=14% Similarity=0.085 Sum_probs=134.3
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCC---CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEE-ecCCC--cE
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSD---KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIAS-GASDK--SV 79 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i 79 (341)
.+.+..+...+...+|+|||++|+.+..+ ..|++||+.+++... +..+.+.+.+++|+||++.|+. .+.++ .|
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDI 260 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccE
Confidence 34556677789999999999999987653 479999998876543 3345566778999999987764 44443 58
Q ss_pred EEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCC-CeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 80 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD-NTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
.+|++.+++.. .+..+........|+|+++.|+..+.. +.. .|+++|
T Consensus 261 ~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~-------------------------------~iy~~d 308 (417)
T TIGR02800 261 YVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSP-------------------------------QIYMMD 308 (417)
T ss_pred EEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCc-------------------------------eEEEEE
Confidence 88998877543 333344445567899999888765532 221 223333
Q ss_pred ccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCC---eEEEE
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDE---CLRLF 235 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~i~ 235 (341)
+.+.+. ..+... ........|+|+|++++.++.++ .|.+|
T Consensus 309 ~~~~~~-~~l~~~------------------------------------~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~ 351 (417)
T TIGR02800 309 ADGGEV-RRLTFR------------------------------------GGYNASPSWSPDGDLIAFVHREGGGFNIAVM 351 (417)
T ss_pred CCCCCE-EEeecC------------------------------------CCCccCeEECCCCCEEEEEEccCCceEEEEE
Confidence 322211 011000 11234456778888777777665 78888
Q ss_pred eccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCC---cEEEEeeeCCCceEEEEeeeeccceEEEEE
Q psy17863 236 DKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG---KIYKWQLVDSSQISTLIHSVGKAVVNSLCS 304 (341)
Q Consensus 236 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 304 (341)
|+.++.. ..+.... .... ..|+|++++|+..+.++ .+++.+ .+++....+. ...+.+..+.|
T Consensus 352 d~~~~~~-~~l~~~~-~~~~--p~~spdg~~l~~~~~~~~~~~l~~~~-~~g~~~~~~~--~~~g~~~~~~w 416 (417)
T TIGR02800 352 DLDGGGE-RVLTDTG-LDES--PSFAPNGRMILYATTRGGRGVLGLVS-TDGRFRARLP--LGNGDVREPAW 416 (417)
T ss_pred eCCCCCe-EEccCCC-CCCC--ceECCCCCEEEEEEeCCCcEEEEEEE-CCCceeeECC--CCCCCcCCCCC
Confidence 8877543 2232221 1122 27899999888776654 345544 3455454444 23344444444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.9e-13 Score=107.97 Aligned_cols=214 Identities=12% Similarity=0.189 Sum_probs=156.9
Q ss_pred cCCCEEEEecCCCcEEEEECCCCceeeeecc---cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCC
Q psy17863 65 CDSSQIASGASDKSVILWEVTTGQPVRRWRE---HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSK 141 (341)
Q Consensus 65 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 141 (341)
|...++|....||.+++|+...++....+.. -.+..++..|. |..... ..+.-.+ .-......+
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-----L~~~~s--~~k~~~~------~~~~~~s~~ 69 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG-----LSADYS--PMKWLSL------EKAKKASLD 69 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE-----EEeccc--hHHHHhH------HHHhhccCC
Confidence 4567899999999999999999887766642 12333344443 111110 0000000 000112233
Q ss_pred CceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCC
Q psy17863 142 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQ 221 (341)
Q Consensus 142 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~ 221 (341)
...++-|...|.|.+|+...++....+.. +.|.+++.++.++.+-.
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st----------------------------------~~h~~~v~~~~~~~~~~ 115 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLST----------------------------------DKHYGNVNEILDAQRLG 115 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEec----------------------------------CCCCCcceeeecccccC
Confidence 45778888889999998887766555543 33566777777788888
Q ss_pred EEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEE
Q psy17863 222 CILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNS 301 (341)
Q Consensus 222 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 301 (341)
.|.+++.|..+..|+....+..+.+......+..+ +++||+..+++++ +.|++||+++++.+..+. +|.++|++
T Consensus 116 ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl--~is~D~~~l~~as--~~ik~~~~~~kevv~~ft--gh~s~v~t 189 (541)
T KOG4547|consen 116 CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL--CISPDGKILLTAS--RQIKVLDIETKEVVITFT--GHGSPVRT 189 (541)
T ss_pred ceEecCCceeEEEEecccceeeeeeccCCCccceE--EEcCCCCEEEecc--ceEEEEEccCceEEEEec--CCCcceEE
Confidence 89999999999999999999999999888777777 8999999999886 479999999999999999 99999999
Q ss_pred EEEcCC-----CcEEEEeC--CCcEEEEEcccccCCc
Q psy17863 302 LCSHPT-----RKHIMSAC--GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 302 ~~~~~~-----~~~l~~~~--d~~i~vw~~~~~~~~~ 331 (341)
+.|..+ |.++.++. +.-+.+|-++.....+
T Consensus 190 ~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkk 226 (541)
T KOG4547|consen 190 LSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKK 226 (541)
T ss_pred EEEEEeccccccceeeeccccccceeEEEEEcccccc
Confidence 999887 67776665 7789999988754443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-12 Score=110.02 Aligned_cols=213 Identities=14% Similarity=0.140 Sum_probs=130.3
Q ss_pred CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCC---CcEEEEECCCCceeeeecccCccEEEEEEcCCCcE
Q psy17863 35 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD---KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSV 111 (341)
Q Consensus 35 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 111 (341)
..|.++|... ...+.+..+...+....|+||+++|+.+..+ ..|++||+.+++.... ..+...+.+++|+||++.
T Consensus 170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 3688888754 3345555577778999999999999877643 4799999988765433 335556677899999987
Q ss_pred EEEe-cCCC--eEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCce
Q psy17863 112 VISG-SQDN--TVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKH 188 (341)
Q Consensus 112 l~~~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (341)
|+.. +.++ .|.+||+.++. .. .+.. .
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~---------------------------------~~-~l~~--~--------------- 276 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQ---------------------------------LT-RLTN--G--------------- 276 (417)
T ss_pred EEEEECCCCCccEEEEECCCCC---------------------------------EE-ECCC--C---------------
Confidence 7643 3333 34444443321 11 0100 0
Q ss_pred EEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeec-CC--eEEEEeccccceeeeecCcccceeEEEEEeCCCCC
Q psy17863 189 IMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCST-DE--CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS 265 (341)
Q Consensus 189 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (341)
........|+|+|+.|+..+. ++ .|+++|+.+++.. .+..+....... .++|+++
T Consensus 277 -------------------~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~--~~spdg~ 334 (417)
T TIGR02800 277 -------------------PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASP--SWSPDGD 334 (417)
T ss_pred -------------------CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCe--EECCCCC
Confidence 011123356667666654443 22 5777787766543 333233333333 7899999
Q ss_pred EEEEecCCC---cEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CC---cEEEEEccc
Q psy17863 266 QIFCGSSDG---KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GN---NVKLWTAEE 326 (341)
Q Consensus 266 ~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~---~i~vw~~~~ 326 (341)
+++.++.++ .|.+||+.++.. ..+. .........|+||++.|+..+ ++ .+.+.+...
T Consensus 335 ~i~~~~~~~~~~~i~~~d~~~~~~-~~l~---~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 335 LIAFVHREGGGFNIAVMDLDGGGE-RVLT---DTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred EEEEEEccCCceEEEEEeCCCCCe-EEcc---CCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCC
Confidence 998887765 788999877543 3333 122345568999999888877 43 355555443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-12 Score=105.60 Aligned_cols=191 Identities=18% Similarity=0.279 Sum_probs=145.5
Q ss_pred ccCCCEEEEEeCCCeEEEEcCCCcceeeEecC---cccceeEEEEe------c--------------CCCEEEEecCCCc
Q psy17863 22 NVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG---HAHEVNDATAA------C--------------DSSQIASGASDKS 78 (341)
Q Consensus 22 ~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~---~~~~v~~~~~~------~--------------~~~~l~~~~~dg~ 78 (341)
.|-+.++|....||.+++|+...+++...|.. -++..++..|. | +-..++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 35567999999999999999999988777742 23344455542 1 2345777888999
Q ss_pred EEEEECCCCceeeeec--ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEE
Q psy17863 79 VILWEVTTGQPVRRWR--EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYK 156 (341)
Q Consensus 79 i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 156 (341)
|.+|++..|+....+. .|.+.|.++.++.+-..|.+++.|+.+..|+..... .+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~----------------------~~~~ 139 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV----------------------IIRI 139 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce----------------------eeee
Confidence 9999999999888776 589999999999999999999999999999987644 2333
Q ss_pred EEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEe
Q psy17863 157 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFD 236 (341)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 236 (341)
|... ...+.+++.+|||+.+++++ +.|++||
T Consensus 140 ~~~~-----------------------------------------------~~~~~sl~is~D~~~l~~as--~~ik~~~ 170 (541)
T KOG4547|consen 140 WKEQ-----------------------------------------------KPLVSSLCISPDGKILLTAS--RQIKVLD 170 (541)
T ss_pred eccC-----------------------------------------------CCccceEEEcCCCCEEEecc--ceEEEEE
Confidence 3322 23466778888888888876 4799999
Q ss_pred ccccceeeeecCcccceeEEEEEeCCC---CCEEEE-ecCCCcEEEEeeeC
Q psy17863 237 KATGELLEEYKGHKSGDFRIECCLDSK---DSQIFC-GSSDGKIYKWQLVD 283 (341)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~-~~~dg~i~iwd~~~ 283 (341)
+++++.+..|.+|.+++.++.+...-+ |.++++ ...+.-+.+|-+..
T Consensus 171 ~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 171 IETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999999999999999985543322 455554 45566688887655
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.4e-12 Score=106.77 Aligned_cols=227 Identities=13% Similarity=0.042 Sum_probs=129.8
Q ss_pred EEeeeCCcEEEEEEccCCCEEE---EEeCC--CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC-CC----
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCL---TCGSD--KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS-DK---- 77 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~---t~~~d--g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg---- 77 (341)
.|......+..-+|+|||+.++ +...+ ..|.+.++.+++... +....+.....+|+|||+.|+..+. +|
T Consensus 179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di 257 (428)
T PRK01029 179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDL 257 (428)
T ss_pred EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcce
Confidence 3444556677889999997532 33333 357777887765433 3334455567899999998886543 22
Q ss_pred cEEEEECCCC---ceeeeecccCccEEEEEEcCCCcEEEEec-CCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCe
Q psy17863 78 SVILWEVTTG---QPVRRWREHASKVTCVKFNEDSSVVISGS-QDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGK 153 (341)
Q Consensus 78 ~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 153 (341)
.+..|++..+ +..+............+|+|||+.|+..+ .+|...+|.+.
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~-------------------------- 311 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ-------------------------- 311 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE--------------------------
Confidence 3444776653 33333332333446789999999877655 34544444322
Q ss_pred EEEEEccC-CcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecC---
Q psy17863 154 IYKWQLVD-SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTD--- 229 (341)
Q Consensus 154 i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--- 229 (341)
+.. +.....+.. . ...+....|+|||+.|+..+.+
T Consensus 312 -----~~~~g~~~~~lt~--~----------------------------------~~~~~~p~wSPDG~~Laf~~~~~g~ 350 (428)
T PRK01029 312 -----IDPEGQSPRLLTK--K----------------------------------YRNSSCPAWSPDGKKIAFCSVIKGV 350 (428)
T ss_pred -----CcccccceEEecc--C----------------------------------CCCccceeECCCCCEEEEEEcCCCC
Confidence 110 000000100 0 1123345667777766654432
Q ss_pred CeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecC---CCcEEEEeeeCCCceEEEEeeeeccceEEEEEcC
Q psy17863 230 ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS---DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 306 (341)
Q Consensus 230 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 306 (341)
..|.+||+.+++...... ....+... .|+|||+.|+.... ...|+++|+..++.. .+. ...+.+...+|+|
T Consensus 351 ~~I~v~dl~~g~~~~Lt~-~~~~~~~p--~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~-~Lt--~~~g~~~~p~Ws~ 424 (428)
T PRK01029 351 RQICVYDLATGRDYQLTT-SPENKESP--SWAIDSLHLVYSAGNSNESELYLISLITKKTR-KIV--IGSGEKRFPSWGA 424 (428)
T ss_pred cEEEEEECCCCCeEEccC-CCCCccce--EECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eee--cCCCcccCceecC
Confidence 469999998876643322 22233334 78999998774332 356888898776543 333 2445577788887
Q ss_pred CC
Q psy17863 307 TR 308 (341)
Q Consensus 307 ~~ 308 (341)
-.
T Consensus 425 ~~ 426 (428)
T PRK01029 425 FP 426 (428)
T ss_pred CC
Confidence 53
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-10 Score=93.43 Aligned_cols=245 Identities=11% Similarity=0.106 Sum_probs=157.3
Q ss_pred CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecC----------CCeEEEEEecCCCCc--------------
Q psy17863 77 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ----------DNTVMMWDVKSRSHH-------------- 132 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~iwd~~~~~~~-------------- 132 (341)
++|.+.|..+++.+..+..-..+- .+ ++||++.|+.+.. +..|.+||..+.+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 889999999999888887543332 34 9999998887765 789999999886521
Q ss_pred --CeEEeecCCCceEEEee-c-cCeEEEEEccCCcceeeeEeeecCce-----EEEEEECCCCceEEEeCC--CceE---
Q psy17863 133 --PIQCCLDSKDSQIFCGS-S-DGKIYKWQLVDSSQISTLIHSVGKAV-----VNSLCSHPTRKHIMSACG--NNVK--- 198 (341)
Q Consensus 133 --~~~~~~~~~~~~~~~~~-~-~g~i~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~i~--- 198 (341)
+......+++..+++.. . +..+.+.|+.+.+.+..+........ -..+..+.|+..+....+ |...
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence 11333444455565544 3 78899999999888877764321110 111233344444433222 2211
Q ss_pred --EEEccccc-CCCCeEEEEEcc-CCCEEEEeecCCeEEEEeccc-----cceeeeecC-------cccceeEEEEEeCC
Q psy17863 199 --LWTAEEDY-GQEPIVDACFTR-DCQCILTCSTDECLRLFDKAT-----GELLEEYKG-------HKSGDFRIECCLDS 262 (341)
Q Consensus 199 --~~~~~~~~-~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~-------~~~~~~~~~~~~~~ 262 (341)
+++.+... ...+ .+.+ +|+++++..+ |.|.+.|+.. .+....+.. .......+ ++++
T Consensus 185 ~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i--a~~~ 257 (352)
T TIGR02658 185 TEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV--AYHR 257 (352)
T ss_pred eeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeE--EEcC
Confidence 11111000 1122 3455 8888877776 9999999543 222222221 11222234 8999
Q ss_pred CCCEEEEec----------CCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCc-EEEEeC--CCcEEEEEcccccC
Q psy17863 263 KDSQIFCGS----------SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK-HIMSAC--GNNVKLWTAEEDYG 329 (341)
Q Consensus 263 ~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--d~~i~vw~~~~~~~ 329 (341)
+++.++... ..+.|.++|..+++.+..+. -...+..++++||++ +|++.. ++.|.+.|..+...
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~---vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE---LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe---CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 999888743 22579999999999999887 345799999999999 777666 78899999988766
Q ss_pred Cccc
Q psy17863 330 QAGL 333 (341)
Q Consensus 330 ~~~~ 333 (341)
.+.+
T Consensus 335 i~~i 338 (352)
T TIGR02658 335 LSSV 338 (352)
T ss_pred Eeee
Confidence 5554
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-13 Score=110.47 Aligned_cols=250 Identities=15% Similarity=0.252 Sum_probs=168.7
Q ss_pred eeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeee-cccCccEEEEEEcC--CCcEEEEecCCCeEEE
Q psy17863 47 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW-REHASKVTCVKFNE--DSSVVISGSQDNTVMM 123 (341)
Q Consensus 47 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i 123 (341)
+...+..|.+.|..+.|...|..|++|+.|..|.+||...++....+ .+|...|....|-| +...+++.+.||.+++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 44567789999999999999999999999999999999998877666 46888888888988 4567899999999988
Q ss_pred EEecCCC-----------CcCeEEeecC--CCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEE
Q psy17863 124 WDVKSRS-----------HHPIQCCLDS--KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 190 (341)
Q Consensus 124 wd~~~~~-----------~~~~~~~~~~--~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (341)
=.+.... ..++..+... ....+.+++.|+.+.-+|++...+...+...... .+
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~-----------~~--- 279 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREAD-----------EK--- 279 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccC-----------Cc---
Confidence 7654322 1112222221 2235677777777777777665544333211111 00
Q ss_pred EeCCCceEEEEcccccCCCCeEEEEEccCCC-EEEEeecCCeEEEEeccccc------eeeeecCc----cc--ceeEEE
Q psy17863 191 SACGNNVKLWTAEEDYGQEPIVDACFTRDCQ-CILTCSTDECLRLFDKATGE------LLEEYKGH----KS--GDFRIE 257 (341)
Q Consensus 191 ~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~------~~~~~~~~----~~--~~~~~~ 257 (341)
..-....++..|... .+++++.|..+++||.+.-. .+..+..| .. .|+++
T Consensus 280 ----------------~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl- 342 (559)
T KOG1334|consen 280 ----------------ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGL- 342 (559)
T ss_pred ----------------cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeE-
Confidence 012456778888544 78999999999999976432 12233221 22 34444
Q ss_pred EEeCCCCCEEEEecCCCcEEEEeeeC--C----------CceEE-EEeeeec--cceEEEE-EcCCCcEEEEeC-CCcEE
Q psy17863 258 CCLDSKDSQIFCGSSDGKIYKWQLVD--S----------SQIST-LIHSVGK--AVVNSLC-SHPTRKHIMSAC-GNNVK 320 (341)
Q Consensus 258 ~~~~~~~~~l~~~~~dg~i~iwd~~~--~----------~~~~~-~~~~~~~--~~v~~~~-~~~~~~~l~~~~-d~~i~ 320 (341)
+++.++.-|.+.-.|-.|+++.-.- | ..+.. ++ +|. ..|..+- |-|...|+++|+ =|.|.
T Consensus 343 -~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYK--GHrN~~TVKgVNFfGPrsEyVvSGSDCGhIF 419 (559)
T KOG1334|consen 343 -VYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYK--GHRNSRTVKGVNFFGPRSEYVVSGSDCGHIF 419 (559)
T ss_pred -EecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhc--ccccccccceeeeccCccceEEecCccceEE
Confidence 8887777777777888899995322 2 11112 33 443 3566664 568899999999 79999
Q ss_pred EEEcccccCC
Q psy17863 321 LWTAEEDYGQ 330 (341)
Q Consensus 321 vw~~~~~~~~ 330 (341)
||+-.++...
T Consensus 420 iW~K~t~eii 429 (559)
T KOG1334|consen 420 IWDKKTGEII 429 (559)
T ss_pred EEecchhHHH
Confidence 9998776533
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-13 Score=124.02 Aligned_cols=200 Identities=17% Similarity=0.319 Sum_probs=158.9
Q ss_pred EeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec-CcccceeEEEEecCCCEEEEecCCCcEEEEECCCC
Q psy17863 9 IDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-GHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 87 (341)
Q Consensus 9 l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 87 (341)
++.|-..|.++.=+|...+.+||+.||.|++|....++.+..++ .....|+.+.|+.+|+.+..+..||.+.+|... .
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 34455778888889999999999999999999999888887775 234789999999999999999999999999976 6
Q ss_pred ceeeeecccCccEEEEEEcCCCcEEEEecC---CCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcc
Q psy17863 88 QPVRRWREHASKVTCVKFNEDSSVVISGSQ---DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 164 (341)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~ 164 (341)
++....+.|.....+..|-. ..+++++. ++.+.+||..... .
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~---------------------------------~ 2327 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPP---------------------------------M 2327 (2439)
T ss_pred cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCc---------------------------------c
Confidence 77788888999999998875 56666653 4556666643221 0
Q ss_pred eeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceee
Q psy17863 165 ISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLE 244 (341)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 244 (341)
. ..|. . -|....+++++.|..+.|++|+.+|.|++||++..++++
T Consensus 2328 ~---------s~v~--~------------------------~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h 2372 (2439)
T KOG1064|consen 2328 N---------SLVH--T------------------------CHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH 2372 (2439)
T ss_pred c---------ceee--e------------------------ecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH
Confidence 0 0000 0 145668889999999999999999999999999888887
Q ss_pred eecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 245 EYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
.++. ++ ...++++|+..|.++||++.....+..++
T Consensus 2373 ~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2373 TFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred Hhhh-----------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 7764 33 45689999999999999999888888776
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.9e-10 Score=90.48 Aligned_cols=181 Identities=13% Similarity=0.122 Sum_probs=130.0
Q ss_pred CceEEEeeccCeEEEEEccCCcceeeeEe-eec-----CceEEEEE----EC-CCCceEEEeCCCceEEEEccccc----
Q psy17863 142 DSQIFCGSSDGKIYKWQLVDSSQISTLIH-SVG-----KAVVNSLC----SH-PTRKHIMSACGNNVKLWTAEEDY---- 206 (341)
Q Consensus 142 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~-~~~-----~~~~~~~~----~~-~~~~~~~~~~~~~i~~~~~~~~~---- 206 (341)
++.-++-...|.|.+||..+.+....-.. ... ...+.-.. ++ .+|.+++..+.|...+.+.....
T Consensus 277 DGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv 356 (668)
T COG4946 277 DGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQV 356 (668)
T ss_pred CCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEc
Confidence 34455556778899999877654322211 000 00011111 11 24667777777777776655433
Q ss_pred -CCCCeEEEEEccCCCEEEEeecCC-eEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCC
Q psy17863 207 -GQEPIVDACFTRDCQCILTCSTDE-CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS 284 (341)
Q Consensus 207 -~~~~i~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (341)
+...|.-..+..+++-++.|..|| .+-+||..+++. +.+...-+.|..+ ..+++|++++.+.....+.+.|+.++
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av--~vs~dGK~~vvaNdr~el~vididng 433 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAV--KVSPDGKKVVVANDRFELWVIDIDNG 433 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEE--EEcCCCcEEEEEcCceEEEEEEecCC
Confidence 556677778888888899999999 899999987764 5555566777777 88999999999999999999999999
Q ss_pred CceEEEEeeeeccceEEEEEcCCCcEEEEeC-CC----cEEEEEcccc
Q psy17863 285 SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GN----NVKLWTAEED 327 (341)
Q Consensus 285 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~----~i~vw~~~~~ 327 (341)
.....-+ ...+-|+.+.|||+++++|-+- +| .|+++|+.++
T Consensus 434 nv~~idk--S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 434 NVRLIDK--SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred CeeEecc--cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 7655444 5678899999999999999987 66 6899998874
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-11 Score=103.78 Aligned_cols=212 Identities=11% Similarity=0.050 Sum_probs=125.1
Q ss_pred eEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCC---CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEE
Q psy17863 36 KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD---KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVV 112 (341)
Q Consensus 36 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 112 (341)
.|.++|...+. ...+..+...+....|+|||+.|+..+.+ ..|.+|++.+++... +....+.+....|+|||+.|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 47788876544 44555577789999999999998876543 468999998886543 22233445578999999888
Q ss_pred EE-ecCCC--eEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceE
Q psy17863 113 IS-GSQDN--TVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHI 189 (341)
Q Consensus 113 ~~-~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (341)
+. ...+| .|.++|+. +++.. .+.. .
T Consensus 258 a~~~~~~g~~~Iy~~d~~---------------------------------~~~~~-~lt~--~---------------- 285 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLA---------------------------------SRQLS-RVTN--H---------------- 285 (430)
T ss_pred EEEEccCCCceEEEEECC---------------------------------CCCeE-Eccc--C----------------
Confidence 74 43333 34444443 32211 1100 0
Q ss_pred EEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeec-C--CeEEEEeccccceeeeecCcccceeEEEEEeCCCCCE
Q psy17863 190 MSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCST-D--ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ 266 (341)
Q Consensus 190 ~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (341)
........|+|||+.++..+. + ..|+++|+.+++...... ...... ...++|+|+.
T Consensus 286 ------------------~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~--~~~~Spdg~~ 344 (430)
T PRK00178 286 ------------------PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNA--RPRLSADGKT 344 (430)
T ss_pred ------------------CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCcc--ceEECCCCCE
Confidence 011223456666665554432 2 257777777665432211 111111 2378999999
Q ss_pred EEEecCC-C--cEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC--CC--cEEEEEccc
Q psy17863 267 IFCGSSD-G--KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GN--NVKLWTAEE 326 (341)
Q Consensus 267 l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~--~i~vw~~~~ 326 (341)
++....+ + .|.++|+.+++. ..+.. ........|+|||+.++..+ ++ .+.+++++.
T Consensus 345 i~~~~~~~~~~~l~~~dl~tg~~-~~lt~---~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 345 LVMVHRQDGNFHVAAQDLQRGSV-RILTD---TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred EEEEEccCCceEEEEEECCCCCE-EEccC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 8876543 3 588889887754 33331 12223568999999988776 33 356666644
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.3e-11 Score=95.95 Aligned_cols=283 Identities=12% Similarity=0.188 Sum_probs=184.0
Q ss_pred CcEEEEEEccCCCEEEEEeCCC---------------eEEEEcCCCcceeeEecCcccc--ee-EEEEecCCCEEEEecC
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDK---------------KIKLWNPYRNLLLKTYGGHAHE--VN-DATAACDSSQIASGAS 75 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg---------------~i~iw~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~~ 75 (341)
..|..+.|+|.++||.|-+..+ .+.+||..++..+..+..-..+ .. -+.|+.+.+++|=-.
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv- 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV- 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-
Confidence 4588999999999999876433 5999999999999998876655 44 678998888766543
Q ss_pred CCcEEEEECCCCce-eeeecc-cCccEEEEEEcCC--CcEEEE-----ecCCCeEEEEEecCCCCcCe---------EEe
Q psy17863 76 DKSVILWEVTTGQP-VRRWRE-HASKVTCVKFNED--SSVVIS-----GSQDNTVMMWDVKSRSHHPI---------QCC 137 (341)
Q Consensus 76 dg~i~iw~~~~~~~-~~~~~~-~~~~v~~~~~~~~--~~~l~~-----~~~d~~i~iwd~~~~~~~~~---------~~~ 137 (341)
...++|+++ ++.. ...+.. ....|....|+|. +..|+. .+.++.+++|.+........ +.-
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk 229 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK 229 (561)
T ss_pred cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence 345999997 3322 111111 1356888889984 334443 45678889998875442111 111
Q ss_pred ecCCCceEEEe--e---------ccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC---CceEEEEcc
Q psy17863 138 LDSKDSQIFCG--S---------SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG---NNVKLWTAE 203 (341)
Q Consensus 138 ~~~~~~~~~~~--~---------~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~ 203 (341)
....+.++++- . .+..++++++......... ...++|...+|.|.++.+++..+ ..+.+++++
T Consensus 230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~---~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK---DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred EecCCceEEEEEEEeeecccceeccceEEEEeecccccceec---cccccceeeeecccCCceeEEecccccceeecccc
Confidence 22223322211 1 1346777777643322221 24577999999999988877663 577888877
Q ss_pred ccc----CCCCeEEEEEccCCCEEEEeecC---CeEEEEeccccceee-eecCcccceeEEEEEeCCCCCEEEEec----
Q psy17863 204 EDY----GQEPIVDACFTRDCQCILTCSTD---ECLRLFDKATGELLE-EYKGHKSGDFRIECCLDSKDSQIFCGS---- 271 (341)
Q Consensus 204 ~~~----~~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~---- 271 (341)
.+. .+..=..+.|+|.+++++.++-| |.+.+||......+. .+.+... -.|.|+|+++++.+..
T Consensus 307 ~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~----s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 307 GNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT----SYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred cceEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc----eEeeccCCceEEEecCCCcc
Confidence 654 45556778899999999987665 679999977554433 5555432 2347999999987764
Q ss_pred --CCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC
Q psy17863 272 --SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 272 --~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
.|..|.|||+.... .. ..+.+.|.|.+++..+.+
T Consensus 383 ~~~Dn~i~l~~v~g~~-~f---------el~~~~W~p~~~~~ttsS 418 (561)
T COG5354 383 LRVDNSIKLWDVYGAK-VF---------ELTNITWDPSGQYVTTSS 418 (561)
T ss_pred cccCcceEEEEecCch-hh---------hhhhccccCCcccceeec
Confidence 37889999975432 22 234455666555555444
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-13 Score=111.50 Aligned_cols=236 Identities=14% Similarity=0.245 Sum_probs=168.2
Q ss_pred eeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC-------CceeeeecccCccEEEEEEcCCCcEEEEecCCCe
Q psy17863 48 LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT-------GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120 (341)
Q Consensus 48 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 120 (341)
+..+.+|...|..++--.+.+-+++++.|++|++|.++. ..+..++..|+.+|.++.|..+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 455778999999888777888899999999999999863 24677889999999999999988877765 789
Q ss_pred EEEEEecCCC-------------CcCeEEeecCCCceEEEe-eccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCC
Q psy17863 121 VMMWDVKSRS-------------HHPIQCCLDSKDSQIFCG-SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR 186 (341)
Q Consensus 121 i~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (341)
|.+||.--+. ...+.++...+...+++| +...+++++|.+..+....+......
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~------------ 873 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP------------ 873 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCC------------
Confidence 9999954322 233444444444555555 77889999998887665554322110
Q ss_pred ceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCE
Q psy17863 187 KHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ 266 (341)
Q Consensus 187 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (341)
..+..+.+++..+.|+.++++-.+|.|.+.|.++|+.+..++........+ -.|..+.
T Consensus 874 -------------------~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllql---aapsdq~ 931 (1034)
T KOG4190|consen 874 -------------------GPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQL---AAPSDQA 931 (1034)
T ss_pred -------------------CCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhh---cCchhHH
Confidence 123557888999999999999999999999999999888877655444433 2456678
Q ss_pred EEEecCCCcEEE-EeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEE
Q psy17863 267 IFCGSSDGKIYK-WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWT 323 (341)
Q Consensus 267 l~~~~~dg~i~i-wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~ 323 (341)
++....|.++.+ |...++....+.. ....+..-+. .-|.-|+++. ...+.+|.
T Consensus 932 L~~saldHslaVnWhaldgimh~q~k--pppepahflq--svgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 932 LAQSALDHSLAVNWHALDGIMHLQDK--PPPEPAHFLQ--SVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred HHhhcccceeEeeehhcCCeeeeccC--CCCcchhhhh--ccCceeEEeccCcEEEEEe
Confidence 888888999999 9877776555544 2222222111 2355666666 55566664
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.4e-10 Score=86.71 Aligned_cols=263 Identities=11% Similarity=0.101 Sum_probs=162.6
Q ss_pred eeCCcEEEEEEccCCCEEEEEeCC---CeEEEEcCCC--ccee--eEecCcccceeEEEEecCCCEEEEecC-CCcEEEE
Q psy17863 11 CKQGAIRAVRFNVDGSYCLTCGSD---KKIKLWNPYR--NLLL--KTYGGHAHEVNDATAACDSSQIASGAS-DKSVILW 82 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~t~~~d---g~i~iw~~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw 82 (341)
.+.+..+-|+|+|+++.|.++..+ |.|.-|.++. |++. ........+-..+++++++++++++.. -|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 356678899999999999988654 6677776654 4432 222222233478999999999998875 5889999
Q ss_pred ECCC-Cceee--eecccCcc----------EEEEEEcCCCcEEEEecC-CCeEEEEEecCCCCcCeEEeecCCCceEEEe
Q psy17863 83 EVTT-GQPVR--RWREHASK----------VTCVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCG 148 (341)
Q Consensus 83 ~~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 148 (341)
-++. |.... ....|.+. +....+.|++++|++.+- --.|.+|++..+...+.....
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~---------- 186 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE---------- 186 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccc----------
Confidence 9865 43221 11224444 788899999999888753 235777777654421111100
Q ss_pred eccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC--CceEEEEccccc-----------------CCC
Q psy17863 149 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEEDY-----------------GQE 209 (341)
Q Consensus 149 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~-----------------~~~ 209 (341)
+ ......+.+.|+|++++....++ ++|.+|..+... ...
T Consensus 187 -------------------v---~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~ 244 (346)
T COG2706 187 -------------------V---KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN 244 (346)
T ss_pred -------------------c---CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCC
Confidence 0 12334677888888888777764 778888776631 345
Q ss_pred CeEEEEEccCCCEEEEeecC-CeEEEEecccc-ceeeeec-CcccceeEEEEEeCCCCCEEEEecCC-CcEEEEeeeCCC
Q psy17863 210 PIVDACFTRDCQCILTCSTD-ECLRLFDKATG-ELLEEYK-GHKSGDFRIECCLDSKDSQIFCGSSD-GKIYKWQLVDSS 285 (341)
Q Consensus 210 ~i~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~ 285 (341)
....+.++|||++|.++.+. ..|.+|.+... ..+.... ........-.+.+++.+++|+++..+ ..|.+|......
T Consensus 245 ~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 245 WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 56788899999999887653 35777765432 1122111 11222223345889999999888765 458888765322
Q ss_pred -ceEEEEeeeeccceEEEEEc
Q psy17863 286 -QISTLIHSVGKAVVNSLCSH 305 (341)
Q Consensus 286 -~~~~~~~~~~~~~v~~~~~~ 305 (341)
.+..+..........|+.|.
T Consensus 325 G~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 325 GRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred ceEEecccccCCCCcEEEEEc
Confidence 22222211233445566553
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-10 Score=96.67 Aligned_cols=287 Identities=9% Similarity=0.023 Sum_probs=172.9
Q ss_pred CCCEEEEEeCCCeEEEEcCCCcceeeEecCccc----------cee-EEEEecCCCEEEEecCCCcEEEEECCCCceeee
Q psy17863 24 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH----------EVN-DATAACDSSQIASGASDKSVILWEVTTGQPVRR 92 (341)
Q Consensus 24 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~----------~v~-~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 92 (341)
.+..+++++.+|.+.-+|..+|+.+.+.+.... .+. .+.. ++..++.++.+|.+..+|.++|+.+.+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 355777888899999999999998877653220 000 1111 355778888899999999999999887
Q ss_pred ecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEE------------eecCCCceEEEeeccCeEEEEEcc
Q psy17863 93 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQC------------CLDSKDSQIFCGSSDGKIYKWQLV 160 (341)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~i~~~d~~ 160 (341)
.+........... .+..++.+..++.+..+|.++++..-... .....++.++.++.+|.+..+|..
T Consensus 146 ~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 146 TKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred ccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence 7643321111112 23456677788999999988766211100 001113467778889999999998
Q ss_pred CCcceeeeEeeecC--ce---EEEEEECC---CCceEEEeCCCceEEEEcccccC-----CCCeEEEEEccCCCEEEEee
Q psy17863 161 DSSQISTLIHSVGK--AV---VNSLCSHP---TRKHIMSACGNNVKLWTAEEDYG-----QEPIVDACFTRDCQCILTCS 227 (341)
Q Consensus 161 ~~~~~~~~~~~~~~--~~---~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~ 227 (341)
+++........... .. ...+..+| ++..++...++.+..+|..+... ...... ....+..++.++
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~--~~~~~~~vy~~~ 301 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVND--FAVDGGRIYLVD 301 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCccC--cEEECCEEEEEc
Confidence 88776554321110 00 00111112 34445555567777777655430 011111 122456678888
Q ss_pred cCCeEEEEeccccceeeeecCcccce-eEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceE-EEEEc
Q psy17863 228 TDECLRLFDKATGELLEEYKGHKSGD-FRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN-SLCSH 305 (341)
Q Consensus 228 ~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~ 305 (341)
.+|.+..+|..+++.+.......... ... .. .+.+++.++.+|.++..|..+|+.+.+... ....+. ...+
T Consensus 302 ~~g~l~ald~~tG~~~W~~~~~~~~~~~sp--~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~--~~~~~~s~P~~- 374 (394)
T PRK11138 302 QNDRVYALDTRGGVELWSQSDLLHRLLTAP--VL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV--DSSGFLSEPVV- 374 (394)
T ss_pred CCCeEEEEECCCCcEEEcccccCCCcccCC--EE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc--CCCcceeCCEE-
Confidence 99999999999998765443211111 111 11 255788899999999999999998887762 222222 2222
Q ss_pred CCCcEEEEeC-CCcEEEEEc
Q psy17863 306 PTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 306 ~~~~~l~~~~-d~~i~vw~~ 324 (341)
.++ .|+.++ ||.|+.+++
T Consensus 375 ~~~-~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 375 ADD-KLLIQARDGTVYAITR 393 (394)
T ss_pred ECC-EEEEEeCCceEEEEeC
Confidence 234 566666 999988765
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-10 Score=98.36 Aligned_cols=223 Identities=10% Similarity=0.004 Sum_probs=125.0
Q ss_pred CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEE---EEecCC--CcEEEEECCCCceeeeecccCccEEEEEEcCCC
Q psy17863 35 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI---ASGASD--KSVILWEVTTGQPVRRWREHASKVTCVKFNEDS 109 (341)
Q Consensus 35 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 109 (341)
..|.+.|...+. .+.+.........-.|+|||+.+ ++...+ ..|.+.++..++..+. ....+.....+|+|||
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCC
Confidence 467777865444 34455455667788999999752 244333 4588888887764333 2234445568999999
Q ss_pred cEEEEecC-CCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCC--cceeeeEeeecCceEEEEEECCCC
Q psy17863 110 SVVISGSQ-DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS--SQISTLIHSVGKAVVNSLCSHPTR 186 (341)
Q Consensus 110 ~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 186 (341)
+.|+..+. +|...+ .+..|++..+ .....+... .
T Consensus 243 ~~Laf~s~~~g~~di-----------------------------~~~~~~~~~g~~g~~~~lt~~-~------------- 279 (428)
T PRK01029 243 KLLAFISDRYGNPDL-----------------------------FIQSFSLETGAIGKPRRLLNE-A------------- 279 (428)
T ss_pred CEEEEEECCCCCcce-----------------------------eEEEeecccCCCCcceEeecC-C-------------
Confidence 88876553 221111 1111222211 000011000 0
Q ss_pred ceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEee-cCCeEEEE--eccc-cceeeeecCcccceeEEEEEeCC
Q psy17863 187 KHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCS-TDECLRLF--DKAT-GELLEEYKGHKSGDFRIECCLDS 262 (341)
Q Consensus 187 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~--d~~~-~~~~~~~~~~~~~~~~~~~~~~~ 262 (341)
.......+|+|||+.|+..+ .+|...+| ++.. +.....+..+...+... .|+|
T Consensus 280 ---------------------~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p--~wSP 336 (428)
T PRK01029 280 ---------------------FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP--AWSP 336 (428)
T ss_pred ---------------------CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce--eECC
Confidence 01123456777777665544 35544444 4432 22233343333333334 7999
Q ss_pred CCCEEEEecCC---CcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC----CCcEEEEEccccc
Q psy17863 263 KDSQIFCGSSD---GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC----GNNVKLWTAEEDY 328 (341)
Q Consensus 263 ~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----d~~i~vw~~~~~~ 328 (341)
||+.|+..+.+ ..|++||+.+++.. .+. .....+....|+|||+.|+... ...|.++++.++.
T Consensus 337 DG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt--~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 337 DGKKIAFCSVIKGVRQICVYDLATGRDY-QLT--TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCeE-Ecc--CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 99988866443 46999999887654 333 2234567899999999887543 3468888887653
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-10 Score=96.92 Aligned_cols=242 Identities=11% Similarity=0.116 Sum_probs=152.7
Q ss_pred CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEE--
Q psy17863 24 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVT-- 101 (341)
Q Consensus 24 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~-- 101 (341)
++..++.++.+|.+..+|..+|+.+....... .+.+.... .+..++.++.+|.+..||.++|+.+..++.......
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 45678888889999999999999887765332 22221111 345677788899999999999998877654322211
Q ss_pred ---EEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeE------------------EeecCCCceEEEeeccCeEEEEEcc
Q psy17863 102 ---CVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ------------------CCLDSKDSQIFCGSSDGKIYKWQLV 160 (341)
Q Consensus 102 ---~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------------~~~~~~~~~~~~~~~~g~i~~~d~~ 160 (341)
.... .+..++.+..++.+..+|.++++..-.. ......++.+++++.+|.+..+|..
T Consensus 182 ~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~ 259 (377)
T TIGR03300 182 GSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLR 259 (377)
T ss_pred CCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECC
Confidence 1111 1246777888899999998776521100 0011135678888899999999999
Q ss_pred CCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccC--------CCCeEEEEEccCCCEEEEeecCCeE
Q psy17863 161 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYG--------QEPIVDACFTRDCQCILTCSTDECL 232 (341)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~~i~~~~~~~~~~~l~~~~~d~~i 232 (341)
+++......... ...... .++..++...++.+..+|..+... ......... .+..+++++.+|.+
T Consensus 260 tG~~~W~~~~~~----~~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l 332 (377)
T TIGR03300 260 SGRVLWKRDASS----YQGPAV-DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYL 332 (377)
T ss_pred CCcEEEeeccCC----ccCceE-eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEE
Confidence 887665543211 111111 133344444457788887755430 011111111 45688899999999
Q ss_pred EEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEE
Q psy17863 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKW 279 (341)
Q Consensus 233 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 279 (341)
+++|..+++.+.+++.+...+...- ++. ++.|+.++.||.|+.+
T Consensus 333 ~~~d~~tG~~~~~~~~~~~~~~~sp-~~~--~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 333 HWLSREDGSFVARLKTDGSGIASPP-VVV--GDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEECCCCCEEEEEEcCCCccccCC-EEE--CCEEEEEeCCceEEEe
Confidence 9999999999988876554332221 122 3468888999998875
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-09 Score=99.90 Aligned_cols=297 Identities=10% Similarity=0.081 Sum_probs=185.1
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEE----cCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECC---
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLW----NPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT--- 85 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~--- 85 (341)
.+.|.++.|-++...++.+..+|.|.+. +..+.. +.....-...|.+++||||+..|+..+.++++.+.+-.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~ 153 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP 153 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence 4689999999999999999999999999 544432 23333456789999999999999999999988876521
Q ss_pred ------------C--------Cceeeeecc------------------------cCccEEEEEEcCCCcEEEEecC---C
Q psy17863 86 ------------T--------GQPVRRWRE------------------------HASKVTCVKFNEDSSVVISGSQ---D 118 (341)
Q Consensus 86 ------------~--------~~~~~~~~~------------------------~~~~v~~~~~~~~~~~l~~~~~---d 118 (341)
. |+....|++ ..+.-..++|-.||.++|+.+. .
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~ 233 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPET 233 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCC
Confidence 0 111111110 2234467889999999998764 2
Q ss_pred ---CeEEEEEecCC-----C--CcCeEEeecCCCceEEEeecc----CeEEEEEccCCcceeeeEee--ecCceEEEEEE
Q psy17863 119 ---NTVMMWDVKSR-----S--HHPIQCCLDSKDSQIFCGSSD----GKIYKWQLVDSSQISTLIHS--VGKAVVNSLCS 182 (341)
Q Consensus 119 ---~~i~iwd~~~~-----~--~~~~~~~~~~~~~~~~~~~~~----g~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~ 182 (341)
..+++|+-+.. + ...-..+.+.|.+.++++... ..|.+|.-+. -....+... .....+..+.|
T Consensus 234 ~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG-LrhgeF~l~~~~~~~~v~~l~W 312 (928)
T PF04762_consen 234 GSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG-LRHGEFTLRFDPEEEKVIELAW 312 (928)
T ss_pred CceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC-cEeeeEecCCCCCCceeeEEEE
Confidence 57899986531 0 111223344444444444332 4566666433 333333322 34567899999
Q ss_pred CCCCceEEEeCCCceEEEEccccc----------CCCCeEEEEEccC-CCEEEEeecCCeEEEEeccccceeeeecCccc
Q psy17863 183 HPTRKHIMSACGNNVKLWTAEEDY----------GQEPIVDACFTRD-CQCILTCSTDECLRLFDKATGELLEEYKGHKS 251 (341)
Q Consensus 183 ~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 251 (341)
++++..|+....+.|.+|...+-. ....+..+.|+|. ...|...+.+|.+..++..-.... +.
T Consensus 313 n~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~----s~-- 386 (928)
T PF04762_consen 313 NSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR----SP-- 386 (928)
T ss_pred CCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe----cC--
Confidence 999999999988889999877633 2334455888885 445666666677776664311110 00
Q ss_pred ceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc-----eEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 252 GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ-----ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
...|++.-++..-+...+.+-.++.... ...+ .-..+|.+++|++++..+++-. ||.|.+|...
T Consensus 387 -------~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l---~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 387 -------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL---ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred -------CCCccCceEEEEEeCCeEEEecccccCCCchHhceEE---cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 0111111122111223455555544322 2223 3467899999999998777777 9999999965
Q ss_pred cc
Q psy17863 326 ED 327 (341)
Q Consensus 326 ~~ 327 (341)
..
T Consensus 457 ~~ 458 (928)
T PF04762_consen 457 LK 458 (928)
T ss_pred CC
Confidence 43
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-10 Score=91.26 Aligned_cols=119 Identities=12% Similarity=0.181 Sum_probs=100.6
Q ss_pred eeCCcEEEEEEccCCCEEEEEeCCC-eEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCce
Q psy17863 11 CKQGAIRAVRFNVDGSYCLTCGSDK-KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP 89 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~t~~~dg-~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 89 (341)
+|.+.|.-..+..+++-++.|..|| .+-|+|..+++ ++.+...-+.|.++..+|+|++++++.....+.+.|+++++.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv 435 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV 435 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence 5788899999998988999999999 99999987766 455666778999999999999999999999999999999987
Q ss_pred eeeecccCccEEEEEEcCCCcEEEEecCCC----eEEEEEecCCC
Q psy17863 90 VRRWREHASKVTCVKFNEDSSVVISGSQDN----TVMMWDVKSRS 130 (341)
Q Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~ 130 (341)
...=+...+-|+.+.|+|+++++|-+--+| .|+++|+.+++
T Consensus 436 ~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 436 RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 666566778899999999999999887665 46667766544
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.8e-11 Score=100.44 Aligned_cols=213 Identities=9% Similarity=0.121 Sum_probs=121.3
Q ss_pred eEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC-C--CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEE
Q psy17863 36 KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS-D--KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVV 112 (341)
Q Consensus 36 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 112 (341)
.|.++|..... .+.+..+...+....|+|||+.|+..+. + ..|.+||+.+++.... ..........+|+|||+.|
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence 67777865443 3445556778899999999999887654 2 3588999988765322 2222334568999999987
Q ss_pred EEe-cCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEE
Q psy17863 113 ISG-SQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS 191 (341)
Q Consensus 113 ~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (341)
+.. +.+|.. .|+++|+.+++.. .+.. +
T Consensus 277 a~~~~~~g~~-------------------------------~Iy~~dl~tg~~~-~lt~--~------------------ 304 (448)
T PRK04792 277 ALVLSKDGQP-------------------------------EIYVVDIATKALT-RITR--H------------------ 304 (448)
T ss_pred EEEEeCCCCe-------------------------------EEEEEECCCCCeE-ECcc--C------------------
Confidence 754 444431 2333333332211 1110 0
Q ss_pred eCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeec-C--CeEEEEeccccceeee-ecCcccceeEEEEEeCCCCCEE
Q psy17863 192 ACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCST-D--ECLRLFDKATGELLEE-YKGHKSGDFRIECCLDSKDSQI 267 (341)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 267 (341)
.......+|+|||+.++..+. + ..|+++|+.+++.... +.+.. ... .+++|+|++|
T Consensus 305 ----------------~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~--~~~--~~~SpDG~~l 364 (448)
T PRK04792 305 ----------------RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQ--NLG--GSITPDGRSM 364 (448)
T ss_pred ----------------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCC--CcC--eeECCCCCEE
Confidence 111233456666666554432 2 3467777776654332 22222 122 3789999998
Q ss_pred EEecC-CC--cEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC--CCc--EEEEEccc
Q psy17863 268 FCGSS-DG--KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNN--VKLWTAEE 326 (341)
Q Consensus 268 ~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~--i~vw~~~~ 326 (341)
+..+. ++ .|.++|+.+++. ..+.. . .......|+|||+.|+... ++. +.+++.+.
T Consensus 365 ~~~~~~~g~~~I~~~dl~~g~~-~~lt~--~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 365 IMVNRTNGKFNIARQDLETGAM-QVLTS--T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred EEEEecCCceEEEEEECCCCCe-EEccC--C-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 77654 34 455667766654 33331 1 1223457999999887766 443 66666643
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.4e-11 Score=88.34 Aligned_cols=248 Identities=17% Similarity=0.227 Sum_probs=159.9
Q ss_pred CCcEEEEEEcc---CCC-EEEEEeCCCeEEEEcCCCcceeeEecCcc------cceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 13 QGAIRAVRFNV---DGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGHA------HEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 13 ~~~v~~~~~~~---~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
+..+..+.|.. +|. .++-+-.+|.|.++..........+++-. ....++.|++.+..++++..+|.+.+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 34566677753 454 55666778999999765544444443221 124578899999999999999999976
Q ss_pred ECCCCce--eeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEc
Q psy17863 83 EVTTGQP--VRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQL 159 (341)
Q Consensus 83 ~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~ 159 (341)
+...... ++.++.|.-+.+...|+. +.+.+++|+.|+.+..||++.++. .+|.-
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-----------------------~i~~n 205 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-----------------------FIWHN 205 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-----------------------eeeec
Confidence 6555544 448899999999999986 567899999999999999884320 11110
Q ss_pred cCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEcc-CCCEEEEeecCCeEEEEecc
Q psy17863 160 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTR-DCQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~ 238 (341)
. . .|...|.++.-+| .+.++++|+.|-.|++||.+
T Consensus 206 ~----------k----------------------------------vH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 206 S----------K----------------------------------VHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTR 241 (339)
T ss_pred c----------e----------------------------------eeecceEEEecCCCCCceEEEeccccceeeeehh
Confidence 0 0 0122344444433 46789999999999999988
Q ss_pred -ccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceE--EEE-eeeeccceEEEEEcCCCcEEEEe
Q psy17863 239 -TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS--TLI-HSVGKAVVNSLCSHPTRKHIMSA 314 (341)
Q Consensus 239 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~-~~~~~~~v~~~~~~~~~~~l~~~ 314 (341)
-++++..-. -.+.|+.+.......++.++++-.+| .+|-+.+.+.... .++ ...|.+-+..-.|.....+||++
T Consensus 242 nm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC 319 (339)
T KOG0280|consen 242 NMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC 319 (339)
T ss_pred cccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeee
Confidence 456665443 34678877433333344455555544 6677766543321 111 22555666666665555789998
Q ss_pred C--CCcEE-EEEcccccC
Q psy17863 315 C--GNNVK-LWTAEEDYG 329 (341)
Q Consensus 315 ~--d~~i~-vw~~~~~~~ 329 (341)
+ |..++ +|-.-+++.
T Consensus 320 sFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 320 SFYDKKIRQLWLHITGEP 337 (339)
T ss_pred eccccceeeeeeeccCCc
Confidence 8 88866 887665543
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-10 Score=98.06 Aligned_cols=184 Identities=11% Similarity=0.113 Sum_probs=127.8
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec--CcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG--GHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
.-++|+||++.|.-+.|+.+.+.|-|...+|.|.+|-+-.+....++. ...+.|.+++|..||..++....||.|.+=
T Consensus 63 mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVG 142 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVG 142 (1189)
T ss_pred hhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEE
Confidence 346899999999999999999999999999999999988776544432 245679999999999999999999999888
Q ss_pred ECCCCcee-eeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC-------------------cCeEE------
Q psy17863 83 EVTTGQPV-RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH-------------------HPIQC------ 136 (341)
Q Consensus 83 ~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------------------~~~~~------ 136 (341)
.++.++.- +.++ ......+.|++|.+.++.+-.+|.+.++|....-. ..+..
T Consensus 143 svdGNRIwgKeLk--g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g 220 (1189)
T KOG2041|consen 143 SVDGNRIWGKELK--GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTG 220 (1189)
T ss_pred eeccceecchhcc--hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccC
Confidence 77644321 1222 22345789999999988888899999999664210 00000
Q ss_pred ---eecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC
Q psy17863 137 ---CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 193 (341)
Q Consensus 137 ---~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (341)
...++...++++..+|.+.+-.-.+......+... -.+....|+++|..+++++
T Consensus 221 ~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG 277 (1189)
T KOG2041|consen 221 PYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCG 277 (1189)
T ss_pred ccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc---cEeecceecCCCcEEEEcc
Confidence 11123347888888888776544433332222211 3466667777777666654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.4e-09 Score=94.64 Aligned_cols=294 Identities=15% Similarity=0.159 Sum_probs=178.8
Q ss_pred eCCcEEEEEEccCCCEEEEEeC------CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC---CCcEEEE
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGS------DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS---DKSVILW 82 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~------dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw 82 (341)
+.+.-..|+|-.||.++|+.+- -..++||+-+ |++..+-..-.+--.+++|.|.|+++|+... ...|.+|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 5556678999999999998764 2589999954 6655555444445567899999999998754 3456677
Q ss_pred ECCCCceeeee----cccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEE-----------eecCC--CceE
Q psy17863 83 EVTTGQPVRRW----REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQC-----------CLDSK--DSQI 145 (341)
Q Consensus 83 ~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----------~~~~~--~~~~ 145 (341)
. ++|-....| ......|..+.|++|+..|+....|. |.+|-..+-+-...+. +.+++ ...+
T Consensus 287 E-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L 364 (928)
T PF04762_consen 287 E-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRL 364 (928)
T ss_pred e-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEE
Confidence 6 455443333 23467899999999999999987665 9999887654222221 22222 1134
Q ss_pred EEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEEC----C-CCceEEEeCCCceEEEEccccc-----------CCC
Q psy17863 146 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH----P-TRKHIMSACGNNVKLWTAEEDY-----------GQE 209 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~i~~~~~~~~~-----------~~~ 209 (341)
...+.+|.+..++.. ..+..+ | +...+++..+..+.+-.++... ...
T Consensus 365 ~v~t~~g~~~~~~~~-----------------~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~ 427 (928)
T PF04762_consen 365 HVLTSNGQYEIYDFA-----------------WDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPS 427 (928)
T ss_pred EEEecCCcEEEEEEE-----------------EEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCC
Confidence 444444444333321 111112 2 2334555556677777666533 467
Q ss_pred CeEEEEEccCCCEEEEeecCCeEEEEecccccee--------eeecC----------cccceeEEEEEeCCCCCEEEEec
Q psy17863 210 PIVDACFTRDCQCILTCSTDECLRLFDKATGELL--------EEYKG----------HKSGDFRIECCLDSKDSQIFCGS 271 (341)
Q Consensus 210 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--------~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~ 271 (341)
+|..++|++++..+++-..||.+.+|........ ..+.. ....... ++|..+...++...
T Consensus 428 ~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 505 (928)
T PF04762_consen 428 PVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQ--LAWLNDDTLLVLSD 505 (928)
T ss_pred CcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEE--EEEeCCCEEEEEEe
Confidence 8999999999988999999999999985432211 11111 1111222 35555565555544
Q ss_pred CC---CcEEEEeeeCCCceEEEE-eeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccc
Q psy17863 272 SD---GKIYKWQLVDSSQISTLI-HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 272 ~d---g~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~ 327 (341)
.+ ..+.++++...+...... .......+..+...++...++.-. +|.+...+....
T Consensus 506 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~ 566 (928)
T PF04762_consen 506 SDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGE 566 (928)
T ss_pred cCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCC
Confidence 43 678888875443222222 113345666666666655455555 888886665544
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.2e-09 Score=97.94 Aligned_cols=269 Identities=10% Similarity=0.077 Sum_probs=144.1
Q ss_pred EEEEEccC-CCEEEEEeCCCeEEEEcCCCcceeeEecC-c-------------ccceeEEEEecCCCEEEEec-CCCcEE
Q psy17863 17 RAVRFNVD-GSYCLTCGSDKKIKLWNPYRNLLLKTYGG-H-------------AHEVNDATAACDSSQIASGA-SDKSVI 80 (341)
Q Consensus 17 ~~~~~~~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-~-------------~~~v~~~~~~~~~~~l~~~~-~dg~i~ 80 (341)
..++++++ ++++++-..++.|+++|.. ++.+..+.. . -.....+++.++++.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 36788874 5667776778899999975 444443332 1 12357889999888666554 457799
Q ss_pred EEECCCCceeeeeccc-----------------CccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCC
Q psy17863 81 LWEVTTGQPVRRWREH-----------------ASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKD 142 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 142 (341)
++|..++. +.++.+- -.....++++| ++..+++...++.|++||..++.. ..
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v---~~------ 719 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT---RV------ 719 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE---EE------
Confidence 99987654 3322110 11235788888 566666667778888888765431 00
Q ss_pred ceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEcccccCCCCeEEEEEccCC
Q psy17863 143 SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDYGQEPIVDACFTRDC 220 (341)
Q Consensus 143 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~i~~~~~~~~~ 220 (341)
+. .+|.....+ +.. ...........++++|+++.++++. ++.|++||+.... +
T Consensus 720 ---~~--G~G~~~~~~---g~~----~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~----~--------- 774 (1057)
T PLN02919 720 ---FS--GDGYERNLN---GSS----GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG----S--------- 774 (1057)
T ss_pred ---Ee--cCCccccCC---CCc----cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc----E---------
Confidence 00 011100000 000 0000011234455555554332222 2445555443211 0
Q ss_pred CEEEEeec----CCeEEEEeccccc-eeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEee--
Q psy17863 221 QCILTCST----DECLRLFDKATGE-LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS-- 293 (341)
Q Consensus 221 ~~l~~~~~----d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-- 293 (341)
.+++++. +....+.+.. +. ....+. ....+ +++++|+.+++-..++.|++||..++.........
T Consensus 775 -~~~~gg~~~~~~~l~~fG~~d-G~g~~~~l~----~P~Gv--avd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~ 846 (1057)
T PLN02919 775 -RLLAGGDPTFSDNLFKFGDHD-GVGSEVLLQ----HPLGV--LCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKA 846 (1057)
T ss_pred -EEEEecccccCcccccccCCC-Cchhhhhcc----CCcee--eEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCc
Confidence 0111100 0000000000 00 000010 11233 78899998888899999999998776544322110
Q ss_pred ---------eeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccC
Q psy17863 294 ---------VGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 294 ---------~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~ 329 (341)
..-.....++++++|+++++-+ ++.|++|++.++..
T Consensus 847 G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 847 GFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1123577899999999888888 99999999987643
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.8e-10 Score=90.07 Aligned_cols=240 Identities=9% Similarity=0.106 Sum_probs=168.4
Q ss_pred eeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEe
Q psy17863 58 VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCC 137 (341)
Q Consensus 58 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 137 (341)
-+-+.|||.|.||++--.-| |.+|--++-..++.+. |. .|.-+.|||+.++|++-+..-...-|+-
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d----------- 278 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDD----------- 278 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCccc-----------
Confidence 46689999999999988777 9999876666666665 54 4788999999999999876544333331
Q ss_pred ecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecC-ceEEEEEECCCCceEEEeCCCceEEEEccccc-------CCC
Q psy17863 138 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK-AVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY-------GQE 209 (341)
Q Consensus 138 ~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~ 209 (341)
.....+.+||++++...+.+...... ..-.-+.|+.++++++.-..++|.+|+...-. .-.
T Consensus 279 -----------~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~ 347 (698)
T KOG2314|consen 279 -----------NEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKIS 347 (698)
T ss_pred -----------CCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCc
Confidence 12246788888888877776543222 23456789999999999999999999876532 456
Q ss_pred CeEEEEEccCCCEEEEeecC-----CeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEec----------CCC
Q psy17863 210 PIVDACFTRDCQCILTCSTD-----ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGS----------SDG 274 (341)
Q Consensus 210 ~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~dg 274 (341)
.|....|+|.++.||-=+.. -.+.+..+.+++.+++-.-+. |....+.|..+|.+|+.-- .=.
T Consensus 348 gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~ 425 (698)
T KOG2314|consen 348 GIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFS 425 (698)
T ss_pred cccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEe
Confidence 78899999999888743322 346677777777666655444 3334446778888887431 122
Q ss_pred cEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC----CCcEEEEEccc
Q psy17863 275 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC----GNNVKLWTAEE 326 (341)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----d~~i~vw~~~~ 326 (341)
.+.|+.++......... .-...|...+|-|.|..+++-+ ..++.+|.++.
T Consensus 426 n~eIfrireKdIpve~v--elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 426 NLEIFRIREKDIPVEVV--ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred eEEEEEeeccCCCceee--ecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 35666666554333222 3567899999999998777655 45799999884
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.2e-11 Score=90.04 Aligned_cols=249 Identities=15% Similarity=0.218 Sum_probs=168.2
Q ss_pred cceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC-Cceeeee-cccCccEEEEEEcCCCcEEEEecCCCeEE
Q psy17863 45 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT-GQPVRRW-REHASKVTCVKFNEDSSVVISGSQDNTVM 122 (341)
Q Consensus 45 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 122 (341)
...+..+++|...++....-|...-+++.+.|.++++|--.+ ++.-..+ .....+++++.+.++...|+.+-.+|++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 345667889999999998889888899999999999996443 3332222 23467889999999999999999899887
Q ss_pred EEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEc
Q psy17863 123 MWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTA 202 (341)
Q Consensus 123 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 202 (341)
-+.+...- ++....+.. ..+...+..+.++....++++.+.++-..|.-
T Consensus 94 efs~sedf-----------------------------nkm~~~r~~--~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc 142 (404)
T KOG1409|consen 94 EFALSEDF-----------------------------NKMTFLKDY--LAHQARVSAIVFSLTHEWVLSTGKDKQFAWHC 142 (404)
T ss_pred EEEhhhhh-----------------------------hhcchhhhh--hhhhcceeeEEecCCceeEEEeccccceEEEe
Confidence 77654311 111111111 11334466666666666666665544444433
Q ss_pred cccc-CCCC--eEEEEEcc--CCCEEEEeecCCeEEEEecc--ccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCc
Q psy17863 203 EEDY-GQEP--IVDACFTR--DCQCILTCSTDECLRLFDKA--TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGK 275 (341)
Q Consensus 203 ~~~~-~~~~--i~~~~~~~--~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 275 (341)
.+.. .-+. ..+.+..+ |-.+...|...|.+..-.+. .-.++..+.+|...+.++ +|.+..+.+++|..|..
T Consensus 143 ~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l--~Wd~~~~~LfSg~~d~~ 220 (404)
T KOG1409|consen 143 TESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCL--KWDPGQRLLFSGASDHS 220 (404)
T ss_pred eccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEE--EEcCCCcEEEeccccCc
Confidence 2221 0000 11111111 11145566666666665543 345678899999999988 88999999999999999
Q ss_pred EEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccc
Q psy17863 276 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~ 327 (341)
+.+||+.-.+-+ .....+|...|..+..-+--+.|.+++ ||.|.+|+.+-.
T Consensus 221 vi~wdigg~~g~-~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 221 VIMWDIGGRKGT-AYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred eEEEeccCCcce-eeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 999998654433 333338999999999999899999999 999999998754
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-10 Score=96.52 Aligned_cols=299 Identities=14% Similarity=0.153 Sum_probs=182.5
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCC------------CEEEEecCCCcEEEE
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDS------------SQIASGASDKSVILW 82 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~dg~i~iw 82 (341)
.-.++.|+|.| ++|-|+ ...|.+-|..+.+.+..+.-|...|+.+.|.|.. -+|+++...|.|.+|
T Consensus 17 N~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 35688899988 677766 5679999999999999999999999999998731 246777888999999
Q ss_pred ECCCCceeeeecccCccEEEEEEcC---CC-cEEEEecCCCeEEEEEecCCCC--------cCeEEeecCC--CceEEEe
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNE---DS-SVVISGSQDNTVMMWDVKSRSH--------HPIQCCLDSK--DSQIFCG 148 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~--~~~~~~~ 148 (341)
|...+..+..++.|.+++..++|-+ +. ..|+.-.....+.+|+..+++. .+..++...+ ...+..-
T Consensus 95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l 174 (1062)
T KOG1912|consen 95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL 174 (1062)
T ss_pred EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence 9999988888999999999999976 33 4666667778999999888762 1222221111 1233333
Q ss_pred eccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCc-----eEEEeCCCceEEEEcccccC---CCCeEEEEEccCC
Q psy17863 149 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK-----HIMSACGNNVKLWTAEEDYG---QEPIVDACFTRDC 220 (341)
Q Consensus 149 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~---~~~i~~~~~~~~~ 220 (341)
+..|.+.+-+.-..++ ...+...+.+..+.. ...++.++.. ...+.. ......++|+|.-
T Consensus 175 ~s~g~vl~~~~l~~se--------p~~pgk~~qI~sd~Sdl~~lere~at~ns~----ts~~~sa~fity~a~faf~p~~ 242 (1062)
T KOG1912|consen 175 GSKGFVLSCKDLGLSE--------PDVPGKEFQITSDHSDLAHLERETATGNST----TSTPASAYFITYCAQFAFSPHW 242 (1062)
T ss_pred ccCceEEEEeccCCCC--------CCCCceeEEEecCccchhhhhhhhhccccc----cCCCcchhHHHHHHhhhcChhh
Confidence 3344443333211100 111111111111100 0000000000 000000 0012346778876
Q ss_pred CEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC----------------C
Q psy17863 221 QCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD----------------S 284 (341)
Q Consensus 221 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------~ 284 (341)
+.++.......+.++|++-..++....-..+.+..+.+...|+...|++.-.||.+.+|-.+. +
T Consensus 243 rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~ 322 (1062)
T KOG1912|consen 243 RNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLG 322 (1062)
T ss_pred hceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccc
Confidence 666666667789999999888888777666666667656777777899999999999997654 2
Q ss_pred CceEEEEeeeeccceEEEEEcCCC-cEEEEeC-CCcEEEEEccccc
Q psy17863 285 SQISTLIHSVGKAVVNSLCSHPTR-KHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 285 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~vw~~~~~~ 328 (341)
++...+.. ...-.+......|.. ..++.-- +|.+.+|.+..+.
T Consensus 323 ~Q~~~vr~-m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r 367 (1062)
T KOG1912|consen 323 EQVHVVRP-MEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR 367 (1062)
T ss_pred cceEEEee-chhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence 22222221 111222333344553 3333333 8889999998654
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.1e-12 Score=101.92 Aligned_cols=279 Identities=16% Similarity=0.225 Sum_probs=177.6
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC-------cceeeEecCcccceeEEEEecCCCEEEEecCCC
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR-------NLLLKTYGGHAHEVNDATAACDSSQIASGASDK 77 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 77 (341)
.++.+.||+..|+.++--.+.+-+++++.|.+|++|.+.. ..+..+++.|..+|.++.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 3567889999999998877888899999999999998653 34677889999999999999988887764 68
Q ss_pred cEEEEECCCCceeeeecc--cCccEEEEEEcC--CCcEEEEe-cCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccC
Q psy17863 78 SVILWEVTTGQPVRRWRE--HASKVTCVKFNE--DSSVVISG-SQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDG 152 (341)
Q Consensus 78 ~i~iw~~~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g 152 (341)
.|++||.--++++..+.. ..+.+..+...+ +...+..+ +...+|+++|.+..+...
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~------------------- 865 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTC------------------- 865 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccccee-------------------
Confidence 899999888877664421 223333344434 34444444 678899999988754211
Q ss_pred eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccccCCC---C----eEEEEEccCCCEEE
Q psy17863 153 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQE---P----IVDACFTRDCQCIL 224 (341)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~---~----i~~~~~~~~~~~l~ 224 (341)
.+++-+... ....+.++++.+.|+.++++- .|.+.+.|.+++.--. + ...+ -.|..+.++
T Consensus 866 E~kVcna~~-----------Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllql-aapsdq~L~ 933 (1034)
T KOG4190|consen 866 ELKVCNAPG-----------PNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQL-AAPSDQALA 933 (1034)
T ss_pred eEEeccCCC-----------CchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhh-cCchhHHHH
Confidence 111111111 223355666666666665553 3566666655543110 1 1111 134556677
Q ss_pred EeecCCeEEE-EeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCC-----CceEEEEeeeeccc
Q psy17863 225 TCSTDECLRL-FDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS-----SQISTLIHSVGKAV 298 (341)
Q Consensus 225 ~~~~d~~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~ 298 (341)
....|.++.+ |...++......+....+...+ ..-|.-++++.....+.+|. ..+ ..+.+++.....+.
T Consensus 934 ~saldHslaVnWhaldgimh~q~kpppepahfl----qsvgpSLV~a~~Gn~lgVYa-d~a~~ha~stitKiR~d~f~G~ 1008 (1034)
T KOG4190|consen 934 QSALDHSLAVNWHALDGIMHLQDKPPPEPAHFL----QSVGPSLVTAQNGNILGVYA-DSAELHAESTITKIRPDEFPGT 1008 (1034)
T ss_pred hhcccceeEeeehhcCCeeeeccCCCCcchhhh----hccCceeEEeccCcEEEEEe-cchhhhhhhhhccccccccCCc
Confidence 7777888888 8877666555544433332222 22355677777777778875 222 22334444355677
Q ss_pred eEEEEEcCCCcEEEEeC-CCcEEE
Q psy17863 299 VNSLCSHPTRKHIMSAC-GNNVKL 321 (341)
Q Consensus 299 v~~~~~~~~~~~l~~~~-d~~i~v 321 (341)
.++++--|-..-+..|. .|.|.+
T Consensus 1009 lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1009 LTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred cceeeeccccchhhccCCCCceee
Confidence 88888888877777777 888875
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-10 Score=87.16 Aligned_cols=225 Identities=19% Similarity=0.317 Sum_probs=155.6
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCc-----ceeeEecCcc------------cceeEEEEecCCC--EEEE
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN-----LLLKTYGGHA------------HEVNDATAACDSS--QIAS 72 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~-----~~~~~~~~~~------------~~v~~~~~~~~~~--~l~~ 72 (341)
..+.|+++.|...|.||++|...|.|.+|.-+.. +...++++|. ..|..+.|..++. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3467999999999999999999999999975432 2233455554 4578888876543 4666
Q ss_pred ecCCCcEEEEECCCCc------------------------------------------eeeee-cccCccEEEEEEcCCC
Q psy17863 73 GASDKSVILWEVTTGQ------------------------------------------PVRRW-REHASKVTCVKFNEDS 109 (341)
Q Consensus 73 ~~~dg~i~iw~~~~~~------------------------------------------~~~~~-~~~~~~v~~~~~~~~~ 109 (341)
.+.|.+|++|.+.... +.+.+ ..|.--+.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7889999999875320 01111 3577778899999988
Q ss_pred cEEEEecCCCeEEEEEecCCCCc----------------CeEEeecCCC--ceEEEeeccCeEEEEEccCCcce------
Q psy17863 110 SVVISGSQDNTVMMWDVKSRSHH----------------PIQCCLDSKD--SQIFCGSSDGKIYKWQLVDSSQI------ 165 (341)
Q Consensus 110 ~~l~~~~~d~~i~iwd~~~~~~~----------------~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~~------ 165 (341)
..++++. |-.|.+|+++-.... .+....+++. ..+.-.++.|.|++-|++.....
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 8888764 678899987754321 1222333332 25677788999999999843221
Q ss_pred eeeEe--------eecCceEEEEEECCCCceEEEeCCCceEEEEccccc--------------------CCCCe---EEE
Q psy17863 166 STLIH--------SVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY--------------------GQEPI---VDA 214 (341)
Q Consensus 166 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------~~~~i---~~~ 214 (341)
..... ..-...|..+.|+++|+++++-.-.++++||..... ....| ..+
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 11110 111245788999999999999999999999987644 11222 357
Q ss_pred EEccCCCEEEEeecCCeEEEEec
Q psy17863 215 CFTRDCQCILTCSTDECLRLFDK 237 (341)
Q Consensus 215 ~~~~~~~~l~~~~~d~~i~i~d~ 237 (341)
.|+.|.+.+++|+..+..-+|-.
T Consensus 344 sfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 344 SFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EecCCcccccccccccceeeecc
Confidence 88889999999988887777753
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-08 Score=76.67 Aligned_cols=75 Identities=9% Similarity=0.100 Sum_probs=52.9
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEcCCCc--ceeeE---ecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeee
Q psy17863 18 AVRFNVDGSYCLTCGSDKKIKLWNPYRN--LLLKT---YGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 92 (341)
Q Consensus 18 ~~~~~~~~~~l~t~~~dg~i~iw~~~~~--~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 92 (341)
.++.+.+|+.||..- |..|.|-...+. ..+.+ -+.....-..++|+||+.+||.+...|+|+++|+.. ..+..
T Consensus 2 ~~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV 79 (282)
T ss_pred ceeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence 366788999888754 778888765432 12222 233344567899999999999999999999999864 44444
Q ss_pred ec
Q psy17863 93 WR 94 (341)
Q Consensus 93 ~~ 94 (341)
+.
T Consensus 80 I~ 81 (282)
T PF15492_consen 80 IP 81 (282)
T ss_pred cC
Confidence 43
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-11 Score=110.99 Aligned_cols=209 Identities=18% Similarity=0.222 Sum_probs=146.8
Q ss_pred EeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecc-cCccEEEEEEcCCC
Q psy17863 31 CGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE-HASKVTCVKFNEDS 109 (341)
Q Consensus 31 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~ 109 (341)
...++...-|..+.+.. .++.+-..|.++.-+|...+.++|+.||.+++|....++.+..++. ....|+.+.|+.+|
T Consensus 2186 ~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG 2263 (2439)
T KOG1064|consen 2186 SNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG 2263 (2439)
T ss_pred ccCCccccceeccccee--EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC
Confidence 33344444454332222 2333556788888899999999999999999999999888877653 34789999999999
Q ss_pred cEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceE
Q psy17863 110 SVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHI 189 (341)
Q Consensus 110 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (341)
+.+..+..||.+.+|...... . ++...+
T Consensus 2264 nk~~i~d~dg~l~l~q~~pk~---~------------~s~qch------------------------------------- 2291 (2439)
T KOG1064|consen 2264 NKFGIVDGDGDLSLWQASPKP---Y------------TSWQCH------------------------------------- 2291 (2439)
T ss_pred CceeeeccCCceeecccCCcc---e------------eccccC-------------------------------------
Confidence 999999999999999876211 1 000000
Q ss_pred EEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEe---ecCCeEEEEecccc---ceeeeecCcccceeEEEEEeCCC
Q psy17863 190 MSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTC---STDECLRLFDKATG---ELLEEYKGHKSGDFRIECCLDSK 263 (341)
Q Consensus 190 ~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 263 (341)
......+.|-. ..+++. +.++.+.+||..-. ..+. ..|.+..+++ ++-|.
T Consensus 2292 ------------------nk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l--~~~P~ 2347 (2439)
T KOG1064|consen 2292 ------------------NKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVL--AYAPK 2347 (2439)
T ss_pred ------------------Cccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEE--EEcCc
Confidence 11111111111 113332 34678999995322 2233 7788888888 88899
Q ss_pred CCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccC
Q psy17863 264 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 264 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~ 329 (341)
.+.|++|+.+|.|++||++..++++.++ . ++ ...++++++ .|.++||++.+...
T Consensus 2348 ~qllisggr~G~v~l~D~rqrql~h~~~--~---------~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2348 HQLLISGGRKGEVCLFDIRQRQLRHTFQ--A---------LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred ceEEEecCCcCcEEEeehHHHHHHHHhh--h---------hh-hhheeeccCcccceEEEEccccch
Confidence 9999999999999999999888877776 2 44 677899999 99999999987543
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-10 Score=98.61 Aligned_cols=275 Identities=17% Similarity=0.263 Sum_probs=171.2
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC-cceeeEecCcc--cceeEEEEecCC--CEEEEecCCCcEEEEECCC
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR-NLLLKTYGGHA--HEVNDATAACDS--SQIASGASDKSVILWEVTT 86 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~~--~~v~~~~~~~~~--~~l~~~~~dg~i~iw~~~~ 86 (341)
-.+++.++..+|.|+-+|.++.-| +.+-|+.. +.+..-+. |. -.|-.+.|+|.. .+-++......-.+|++..
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 356788999999999999999877 44555543 33333332 32 346777888743 3444444445567899864
Q ss_pred C---ceeeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCCc----------CeEEeecCCCceEEEeeccC
Q psy17863 87 G---QPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHH----------PIQCCLDSKDSQIFCGSSDG 152 (341)
Q Consensus 87 ~---~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~----------~~~~~~~~~~~~~~~~~~~g 152 (341)
. .....+.+|...|+.+.|+| ....+++++.|-.+..||+++.... ..++.....+..+++.+...
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~ 180 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN 180 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC
Confidence 3 33455678999999999998 4568899999999999999986532 23344445566777788888
Q ss_pred eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEcc-CCCEEEEeecCCe
Q psy17863 153 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTR-DCQCILTCSTDEC 231 (341)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~ 231 (341)
.+.+||.+.+......... +...+ ..+.|.. ....+.+++.|++
T Consensus 181 ~i~vwd~r~gs~pl~s~K~-~vs~v----------------------------------n~~~fnr~~~s~~~s~~~d~t 225 (1081)
T KOG0309|consen 181 DIFVWDLRKGSTPLCSLKG-HVSSV----------------------------------NSIDFNRFKYSEIMSSSNDGT 225 (1081)
T ss_pred ceEEEeccCCCcceEEecc-cceee----------------------------------ehHHHhhhhhhhhcccCCCCc
Confidence 8999999876544332211 22222 2233322 1234778889999
Q ss_pred EEEEeccccceeee-ecCcccceeEEEEEeCCCCC--EEEE--e-------cCCCcEEEEeeeC-CCceEEEEeeeeccc
Q psy17863 232 LRLFDKATGELLEE-YKGHKSGDFRIECCLDSKDS--QIFC--G-------SSDGKIYKWQLVD-SSQISTLIHSVGKAV 298 (341)
Q Consensus 232 i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~l~~--~-------~~dg~i~iwd~~~-~~~~~~~~~~~~~~~ 298 (341)
|+.||......... ......+++.- .+-|-|. .+.- | --+..-..|+..+ .+++.++. +|.+.
T Consensus 226 vkfw~y~kSt~e~~~~vtt~~piw~~--r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~--GH~D~ 301 (1081)
T KOG0309|consen 226 VKFWDYSKSTTESKRTVTTNFPIWRG--RYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV--GHDDV 301 (1081)
T ss_pred eeeecccccccccceeccccCcceec--cccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeec--CcchH
Confidence 99999764432111 11122333333 2333222 2111 1 1122223344333 35678888 89998
Q ss_pred eEEEEEcCCCc----------EEEEeC-CCcEEEEEcccc
Q psy17863 299 VNSLCSHPTRK----------HIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 299 v~~~~~~~~~~----------~l~~~~-d~~i~vw~~~~~ 327 (341)
|....|-..+. .|++-+ |..+++|.+..+
T Consensus 302 V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 302 VLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred HHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 88887754332 689999 999999998764
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.5e-10 Score=83.68 Aligned_cols=114 Identities=17% Similarity=0.235 Sum_probs=92.3
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEcCCCccee--eEecCcccceeEEEEec-CCCEEEEecCCCcEEEEECC-CCceee
Q psy17863 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLL--KTYGGHAHEVNDATAAC-DSSQIASGASDKSVILWEVT-TGQPVR 91 (341)
Q Consensus 16 v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~-~~~~~~ 91 (341)
-.++.|++.+..++++..+|.+.+-+....... ++.+.|.-+.....|+. +.+.+.+|+.|+.+..||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 346778888989999999999996665544443 37889999999999976 45688999999999999998 344444
Q ss_pred e-ecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCC
Q psy17863 92 R-WREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSR 129 (341)
Q Consensus 92 ~-~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~ 129 (341)
. .+.|...|.+|.-+| .+.++++|+.|-.|++||.++.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence 3 456889999999887 6889999999999999998854
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-08 Score=86.01 Aligned_cols=102 Identities=13% Similarity=0.066 Sum_probs=69.3
Q ss_pred CcEEEEEEccCCCE-EEEEeC---CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEe-cC--CCcEEEEECCC
Q psy17863 14 GAIRAVRFNVDGSY-CLTCGS---DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG-AS--DKSVILWEVTT 86 (341)
Q Consensus 14 ~~v~~~~~~~~~~~-l~t~~~---dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~--dg~i~iw~~~~ 86 (341)
+.+....|+|||+. ++..+. +..|.++|+.+++...... ..+......|+|||+.++.. +. +..|.++|+.+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 36788999999985 554333 3579999998876544333 45556678899999877643 32 35688888877
Q ss_pred CceeeeecccCccEEEEEEcCCCcEEEEecC
Q psy17863 87 GQPVRRWREHASKVTCVKFNEDSSVVISGSQ 117 (341)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 117 (341)
++. ..+..+........|+|||+.|+..+.
T Consensus 267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sd 296 (419)
T PRK04043 267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSD 296 (419)
T ss_pred CcE-EEcccCCCccCccEECCCCCEEEEEEC
Confidence 764 334434433345689999987776653
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.6e-10 Score=84.45 Aligned_cols=264 Identities=16% Similarity=0.274 Sum_probs=166.0
Q ss_pred cccceeEEEEecCCCEEEEecCCCcEEEEECCCCc-----eeeeecccC------------ccEEEEEEcCCC--cEEEE
Q psy17863 54 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ-----PVRRWREHA------------SKVTCVKFNEDS--SVVIS 114 (341)
Q Consensus 54 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~~ 114 (341)
....|+++.|...|.+|++|...|.|.+|.-+... ....+++|. ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34578999999999999999999999999754432 223344443 357778886533 35666
Q ss_pred ecCCCeEEEEEecCCCCcCeE------EeecCCCceEEEeeccCeEEEEEccCCc-----ceeeeEeeecCceEEEEEEC
Q psy17863 115 GSQDNTVMMWDVKSRSHHPIQ------CCLDSKDSQIFCGSSDGKIYKWQLVDSS-----QISTLIHSVGKAVVNSLCSH 183 (341)
Q Consensus 115 ~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~~~~g~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~ 183 (341)
.+.|.+|++|.+.......+. ....+.++.+.+. ..+++=.+.... .........+...++++.++
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~---~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTST---KELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCH---HHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 778999999998765321110 0111111100000 000000000000 00111123355679999999
Q ss_pred CCCceEEEeCCCceEEEEcccccCC---------------CCeEEEEEccC-CCEEEEeecCCeEEEEeccccce-----
Q psy17863 184 PTRKHIMSACGNNVKLWTAEEDYGQ---------------EPIVDACFTRD-CQCILTCSTDECLRLFDKATGEL----- 242 (341)
Q Consensus 184 ~~~~~~~~~~~~~i~~~~~~~~~~~---------------~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~----- 242 (341)
.+...++++.+-.|.+|+++...+. .-|++..|+|. ...+.-.+..|.|++-|++...+
T Consensus 182 sD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 182 SDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred CchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 9999999999999999998765422 34677888885 55666778899999999984321
Q ss_pred -eee----------ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCC-CceEEEEeeeec------------cc
Q psy17863 243 -LEE----------YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS-SQISTLIHSVGK------------AV 298 (341)
Q Consensus 243 -~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~------------~~ 298 (341)
+.+ +.+-...|..+ .|+++|+++++-+. -++++||.+.. .++.+++ .|. ..
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~--kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~--~h~~l~~~l~d~YEnDa 336 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDF--KFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIP--MHCDLMDELNDVYENDA 336 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcce--EEcCCCcEEEEecc-ceEEEEecccccCCceeec--hHHHHHHHHHhhhhccc
Confidence 111 11122334444 79999999988754 47999998754 4566654 221 12
Q ss_pred e---EEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 299 V---NSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 299 v---~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
| ..+.||.|.+.+.+|+ .+..-++-..
T Consensus 337 ifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 337 IFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeeEEEEecCCcccccccccccceeeeccc
Confidence 2 3467899999999998 8887777644
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-08 Score=75.60 Aligned_cols=242 Identities=9% Similarity=0.009 Sum_probs=158.6
Q ss_pred cCCCcEEEEECCCCc--eeeeecccCccEEEEEEcC-----CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCC-----
Q psy17863 74 ASDKSVILWEVTTGQ--PVRRWREHASKVTCVKFNE-----DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSK----- 141 (341)
Q Consensus 74 ~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----- 141 (341)
+....+.+|++-+.. .+..+ +.+.|.| .-.+|+.|+..|...+|...+.+.....+-....
T Consensus 49 ~~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~ 121 (344)
T KOG4532|consen 49 SKTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV 121 (344)
T ss_pred cceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhh
Confidence 334557777775543 22222 3345544 3458999999999999999876654444433322
Q ss_pred ------CceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccccc--------
Q psy17863 142 ------DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY-------- 206 (341)
Q Consensus 142 ------~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~-------- 206 (341)
...+..++.|.++++.++............ .-...++..++++++.++.++ ..+..|.++.+.
T Consensus 122 ~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~--~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~ 199 (344)
T KOG4532|consen 122 KRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ--NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYE 199 (344)
T ss_pred hhhcccccceeeccCCcceeEEEEecCcccceeecc--ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEe
Confidence 125677788888888877654433332211 123789999999999998887 778888776543
Q ss_pred --CCCCeEEEEEccCCCEEEEeecCCeEEEEecccccee-----eeecCcccceeEEEEEeCCCCC--EEEEecCCCcEE
Q psy17863 207 --GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELL-----EEYKGHKSGDFRIECCLDSKDS--QIFCGSSDGKIY 277 (341)
Q Consensus 207 --~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~dg~i~ 277 (341)
....-.+..|+.....+|++..||++.|||++..... ..-..|.+.+... .|++.|. +|+..-.-+.+.
T Consensus 200 a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c--~Fsl~g~lDLLf~sEhfs~~h 277 (344)
T KOG4532|consen 200 APTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVC--RFSLYGLLDLLFISEHFSRVH 277 (344)
T ss_pred cccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEE--EecCCCcceEEEEecCcceEE
Confidence 2334456788888899999999999999998865322 2224567777666 5666443 455555667899
Q ss_pred EEeeeCCCceEEEEeee-----ec-cceEEEEEcCCCcEEEEeCCCcEEEEEccc
Q psy17863 278 KWQLVDSSQISTLIHSV-----GK-AVVNSLCSHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 278 iwd~~~~~~~~~~~~~~-----~~-~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
+.|+++++..+.+.... |. ..|..-.|+.++.-+.+.+.-.+.=|++.+
T Consensus 278 v~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~s 332 (344)
T KOG4532|consen 278 VVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILS 332 (344)
T ss_pred EEEcccCceeeEEecCccccccccccccccccccCCCcccccccchhhheeeccc
Confidence 99999987766655211 11 337777788777776666644455566554
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-07 Score=74.33 Aligned_cols=240 Identities=10% Similarity=0.056 Sum_probs=156.9
Q ss_pred EEEEEEcc-CCCEEEEEeCCC-eEEEEcCCCcceeeEecCcccce--eEEEEecCCCEEEEec-----CCCcEEEEECC-
Q psy17863 16 IRAVRFNV-DGSYCLTCGSDK-KIKLWNPYRNLLLKTYGGHAHEV--NDATAACDSSQIASGA-----SDKSVILWEVT- 85 (341)
Q Consensus 16 v~~~~~~~-~~~~l~t~~~dg-~i~iw~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~-----~dg~i~iw~~~- 85 (341)
...++.+| .+..++.+-..| ...+||..+++....+....+.- -.-.|++||++|++.- ..|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34678888 455666666655 47889999998887765433322 1357999999999863 35889999998
Q ss_pred CCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcce
Q psy17863 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
+.+.+..+..|.-.-..+.+.||++.|+.+- |-|.- . .......+-..+.+..+.+.|..+++.+
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN--GGI~T-----h--------pd~GR~kLNl~tM~psL~~ld~~sG~ll 151 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVAN--GGIET-----H--------PDSGRAKLNLDTMQPSLVYLDARSGALL 151 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEc--CCCcc-----C--------cccCceecChhhcCCceEEEecCCCcee
Confidence 5677888888877778899999998787763 22211 0 0000112222334455666677777777
Q ss_pred eeeEe--eecCceEEEEEECCCCceEEEeCC-C-------ceEEEEccc---------c---cCCCCeEEEEEccCCCEE
Q psy17863 166 STLIH--SVGKAVVNSLCSHPTRKHIMSACG-N-------NVKLWTAEE---------D---YGQEPIVDACFTRDCQCI 223 (341)
Q Consensus 166 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~-------~i~~~~~~~---------~---~~~~~i~~~~~~~~~~~l 223 (341)
.+... ..+...+..+++.++|..++.... + -+-+++... . .....+-++++++++..+
T Consensus 152 ~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~i 231 (305)
T PF07433_consen 152 EQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLI 231 (305)
T ss_pred eeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEE
Confidence 66544 446667999999999887776542 1 133333322 1 145778999999999877
Q ss_pred E-EeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcE
Q psy17863 224 L-TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKI 276 (341)
Q Consensus 224 ~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 276 (341)
+ ++-..+.+.+||..+++.+....-.. +..+ +..+++ ++++.+ .|.+
T Consensus 232 a~tsPrGg~~~~~d~~tg~~~~~~~l~D--~cGv--a~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 232 AVTSPRGGRVAVWDAATGRLLGSVPLPD--ACGV--APTDDG-FLVSSG-QGQL 279 (305)
T ss_pred EEECCCCCEEEEEECCCCCEeeccccCc--eeee--eecCCc-eEEeCC-CccE
Confidence 5 55567789999999999887765433 2223 445555 555544 4443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-07 Score=73.15 Aligned_cols=223 Identities=12% Similarity=0.090 Sum_probs=128.0
Q ss_pred EEEEcc-CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEe-cCCCEEEEecCCCcEEEEECCCCceeeeecc
Q psy17863 18 AVRFNV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAA-CDSSQIASGASDKSVILWEVTTGQPVRRWRE 95 (341)
Q Consensus 18 ~~~~~~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 95 (341)
++.|.+ ++.++++--..+.|..|+..+++... +.... ...+++. +++ .++.+...+ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeec
Confidence 578888 67777777678999999988765433 32222 6677777 565 555555544 56669988865443332
Q ss_pred -----cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEe
Q psy17863 96 -----HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH 170 (341)
Q Consensus 96 -----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~ 170 (341)
.....+.+++.++|++.++....... ... ..|.+..++.. ++ ......
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~------~~~-------------------~~g~v~~~~~~-~~-~~~~~~ 131 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGA------SGI-------------------DPGSVYRIDPD-GK-VTVVAD 131 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCT------TCG-------------------GSEEEEEEETT-SE-EEEEEE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCcc------ccc-------------------cccceEEECCC-Ce-EEEEec
Confidence 34567889999998866554432110 000 00334444433 11 111111
Q ss_pred eecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEE-EeecCCeEEEEeccccce-------
Q psy17863 171 SVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCIL-TCSTDECLRLFDKATGEL------- 242 (341)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~------- 242 (341)
. .. ..+.++|+|+++.|+ +-+..+.|..|++.....
T Consensus 132 ~--~~----------------------------------~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~ 175 (246)
T PF08450_consen 132 G--LG----------------------------------FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRV 175 (246)
T ss_dssp E--ES----------------------------------SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEE
T ss_pred C--cc----------------------------------cccceEECCcchheeecccccceeEEEeccccccceeeeee
Confidence 1 11 234455566655443 445566777777652211
Q ss_pred eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEc-CCCcEEEE
Q psy17863 243 LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH-PTRKHIMS 313 (341)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~ 313 (341)
...+.......-.+ +++.+|++.++....+.|.+++.+ |+.+..+.. ....+++++|. ++.+.|..
T Consensus 176 ~~~~~~~~g~pDG~--~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~--p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 176 FIDFPGGPGYPDGL--AVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL--PVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEE-SSSSCEEEEE--EEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE---SSSSEEEEEEESTTSSEEEE
T ss_pred EEEcCCCCcCCCcc--eEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC--CCCCEEEEEEECCCCCEEEE
Confidence 11222222223344 789999988888889999999965 888888873 34589999994 66555543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.1e-11 Score=63.87 Aligned_cols=39 Identities=26% Similarity=0.615 Sum_probs=37.3
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEc
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWN 41 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~ 41 (341)
.++++++++|.++|++++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 368999999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-08 Score=76.86 Aligned_cols=207 Identities=11% Similarity=0.163 Sum_probs=118.2
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecC-------cccceeEEEEecCC------CEEEEecCCCcEEEE
Q psy17863 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG-------HAHEVNDATAACDS------SQIASGASDKSVILW 82 (341)
Q Consensus 16 v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-------~~~~v~~~~~~~~~------~~l~~~~~dg~i~iw 82 (341)
=+.++||||+.+||.+...|+|++||+... .+..+.. -...|..+.|.+.. ..|++-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 357899999999999999999999998643 3333321 23456677775421 246677788888877
Q ss_pred ECCCC-----ceeeeec---ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeE
Q psy17863 83 EVTTG-----QPVRRWR---EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 83 ~~~~~-----~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 154 (341)
-+..+ +....+. .+...|.++.++|..++|+.|+.... +.+. ....+--+
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----------------s~a~~~GL 182 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----------------SKASSCGL 182 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----------------ccccccCc
Confidence 76332 2233332 24678999999999888888775422 0000 00011112
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEE
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRL 234 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 234 (341)
..|.+-+..+.......... .+. ..+....+.- -..++++. ........|..+.+||||..|++...+|.|.+
T Consensus 183 taWRiL~~~Pyyk~v~~~~~-~~~---~~~~~~~~~~--~~~~~~fs-~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsL 255 (282)
T PF15492_consen 183 TAWRILSDSPYYKQVTSSED-DIT---ASSKRRGLLR--IPSFKFFS-RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSL 255 (282)
T ss_pred eEEEEcCCCCcEEEccccCc-ccc---ccccccceee--ccceeeee-ccccCCCceEEEEECCCCCEEEEEEcCCeEEE
Confidence 23333222221111100000 000 0000000000 00111111 11224677899999999999999999999999
Q ss_pred EeccccceeeeecCcccc
Q psy17863 235 FDKATGELLEEYKGHKSG 252 (341)
Q Consensus 235 ~d~~~~~~~~~~~~~~~~ 252 (341)
|++.+-++.+++.-++.+
T Consensus 256 W~iPsL~~~~~W~~~eqP 273 (282)
T PF15492_consen 256 WEIPSLRLQRSWKQDEQP 273 (282)
T ss_pred EecCcchhhcccchhhCC
Confidence 999988877777655444
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-09 Score=87.20 Aligned_cols=235 Identities=18% Similarity=0.227 Sum_probs=173.4
Q ss_pred cccceeEEEEecCCCEEEEecCCCcEEEEECCC--C-ceeeeecccCccEEEEEEcCCCcEEEEecC-CCeEEEEEecCC
Q psy17863 54 HAHEVNDATAACDSSQIASGASDKSVILWEVTT--G-QPVRRWREHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSR 129 (341)
Q Consensus 54 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~ 129 (341)
|...|+.+... -.+++.+++.||.++.|.-.. + +.+..+..|...|.+++.+-++.++.+.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 77777776544 567999999999999998543 1 445566788999999999999999999777 999999998874
Q ss_pred CCc---------CeEEeecCCCc---eE-EEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CC
Q psy17863 130 SHH---------PIQCCLDSKDS---QI-FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GN 195 (341)
Q Consensus 130 ~~~---------~~~~~~~~~~~---~~-~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 195 (341)
... ........++. .+ +..-.+|.+.++|-....+........+..+|..+.+.+.+..+++.. .|
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g 166 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG 166 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence 421 11222223331 33 334567899999988777666666666778899999999999888877 48
Q ss_pred ceEEEEccccc----------------------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCc----
Q psy17863 196 NVKLWTAEEDY----------------------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGH---- 249 (341)
Q Consensus 196 ~i~~~~~~~~~----------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---- 249 (341)
.|.-|..+... ......++.|+|++..+.+-+.|..|++++.++++.++++...
T Consensus 167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~ 246 (558)
T KOG0882|consen 167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDA 246 (558)
T ss_pred eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhh
Confidence 89999887411 3356789999999999999999999999999988766554311
Q ss_pred ---------------------------ccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEE
Q psy17863 250 ---------------------------KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 290 (341)
Q Consensus 250 ---------------------------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 290 (341)
.+.......+|+..+++|+-|+-=| |++.++.++...+.+
T Consensus 247 ~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 247 QYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 0111122347888999998887655 888998888766654
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.6e-08 Score=80.75 Aligned_cols=245 Identities=9% Similarity=0.058 Sum_probs=147.6
Q ss_pred CCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEE-E
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTC-V 103 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~-~ 103 (341)
+..++.++.+|.+..+|.++|+.+.+.+........... .+..++.+..++.+..+|.++|+.+..+......... .
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 446677788999999999999988877643322111122 2446777888999999999999988777532111100 0
Q ss_pred EEcC--CCcEEEEecCCCeEEEEEecCCCCcCeE------------------EeecCCCceEEEeeccCeEEEEEccCCc
Q psy17863 104 KFNE--DSSVVISGSQDNTVMMWDVKSRSHHPIQ------------------CCLDSKDSQIFCGSSDGKIYKWQLVDSS 163 (341)
Q Consensus 104 ~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------------~~~~~~~~~~~~~~~~g~i~~~d~~~~~ 163 (341)
.-+| .+..++.++.+|.+..+|..+++..-.. ......++.++.++.+|.+..+|..+++
T Consensus 198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 0112 1235666777888888887766521110 0011125677888889999999999987
Q ss_pred ceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc--------CCCCeEEEEEccCCCEEEEeecCCeEEEE
Q psy17863 164 QISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY--------GQEPIVDACFTRDCQCILTCSTDECLRLF 235 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 235 (341)
.+....... ...+.. .++..++...++.+..+|..+.. ......+..+ .+..++.++.+|.+..+
T Consensus 278 ~~W~~~~~~----~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~l 350 (394)
T PRK11138 278 IVWKREYGS----VNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWI 350 (394)
T ss_pred EEEeecCCC----ccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEE
Confidence 765543211 111111 12334444445666666654432 0011111111 24567888999999999
Q ss_pred eccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEee
Q psy17863 236 DKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 281 (341)
Q Consensus 236 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (341)
|..+|+.+...+.....+..- ..+ .+..|+.++.||.++.++.
T Consensus 351 d~~tG~~~~~~~~~~~~~~s~-P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 351 NREDGRFVAQQKVDSSGFLSE-PVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ECCCCCEEEEEEcCCCcceeC-CEE--ECCEEEEEeCCceEEEEeC
Confidence 999999887775433322221 112 2457888899999988764
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.8e-08 Score=81.19 Aligned_cols=212 Identities=12% Similarity=0.037 Sum_probs=119.2
Q ss_pred CeEEEEcCCCcceeeEecCcccceeEEEEecCCCE-EEEecC---CCcEEEEECCCCceeeeecccCccEEEEEEcCCCc
Q psy17863 35 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQ-IASGAS---DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS 110 (341)
Q Consensus 35 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 110 (341)
..|.+-|..... .+.+.... ......|+|||+. ++..+. +..|.++|+.+++...... ..+......|+|||+
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 355555553333 33333233 6778999999985 554333 3569999998887654433 455566788999998
Q ss_pred EEEEec-CCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceE
Q psy17863 111 VVISGS-QDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHI 189 (341)
Q Consensus 111 ~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (341)
.++... .++ +..|.++|+..++. ..+.....
T Consensus 246 ~la~~~~~~g-------------------------------~~~Iy~~dl~~g~~-~~LT~~~~---------------- 277 (419)
T PRK04043 246 KLLLTMAPKG-------------------------------QPDIYLYDTNTKTL-TQITNYPG---------------- 277 (419)
T ss_pred EEEEEEccCC-------------------------------CcEEEEEECCCCcE-EEcccCCC----------------
Confidence 776443 222 12344444433321 11111100
Q ss_pred EEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeec-CC--eEEEEeccccceeeeecCcccceeEEEEEeCCCCCE
Q psy17863 190 MSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCST-DE--CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ 266 (341)
Q Consensus 190 ~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (341)
......|+|||+.|+..+. .+ .|.+.|+.+++..+.... .. ... .++|+|++
T Consensus 278 --------------------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~--~~SPDG~~ 332 (419)
T PRK04043 278 --------------------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNS--SVSTYKNY 332 (419)
T ss_pred --------------------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCc--eECCCCCE
Confidence 0112246666655544332 22 577888877765333221 11 112 78999998
Q ss_pred EEEecCC---------CcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC--CCc--EEEEEccc
Q psy17863 267 IFCGSSD---------GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNN--VKLWTAEE 326 (341)
Q Consensus 267 l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~--i~vw~~~~ 326 (341)
++..... ..|.+.|+.+++. ..+.. . .......|+|||+.++... .+. +.+.+++.
T Consensus 333 Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~--~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 333 IVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTA--N-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCC--C-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 8766543 3688888877754 44442 1 2334588999999887766 333 55555544
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.6e-10 Score=86.26 Aligned_cols=153 Identities=13% Similarity=0.135 Sum_probs=108.5
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcce----eeEecCcccceeEEEEecCCCEEEEe---cCCCcEEEEECCCC
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLL----LKTYGGHAHEVNDATAACDSSQIASG---ASDKSVILWEVTTG 87 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~iw~~~~~ 87 (341)
....+..++.++++|.+..+....+++...... ...+. -...-+++.|..+......+ +....+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 344566788899999998888877776554332 22222 23344556666555555544 34455666666554
Q ss_pred ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC---------CCCcCeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 88 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS---------RSHHPIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
.+ ..+-+|-+.+++++++||+++++++..|..|++-.... ++..-+..+...++..|++++.|+++++||
T Consensus 143 ~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 143 RC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWD 221 (390)
T ss_pred Cc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEe
Confidence 43 44557999999999999999999999999999977654 233445556666777899999999999999
Q ss_pred ccCCcceeeeE
Q psy17863 159 LVDSSQISTLI 169 (341)
Q Consensus 159 ~~~~~~~~~~~ 169 (341)
+.+++.+..+.
T Consensus 222 ~~sgk~L~t~d 232 (390)
T KOG3914|consen 222 ITSGKLLDTCD 232 (390)
T ss_pred cccCCcccccc
Confidence 99999886654
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-08 Score=74.85 Aligned_cols=198 Identities=12% Similarity=0.051 Sum_probs=126.2
Q ss_pred EEEEcc-----CCCEEEEEeCCCeEEEEcCCCcce-eeEecCcccceeEEEEecC-CCEEEEecCCCcEEEEECCCCcee
Q psy17863 18 AVRFNV-----DGSYCLTCGSDKKIKLWNPYRNLL-LKTYGGHAHEVNDATAACD-SSQIASGASDKSVILWEVTTGQPV 90 (341)
Q Consensus 18 ~~~~~~-----~~~~l~t~~~dg~i~iw~~~~~~~-~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~ 90 (341)
.+.|-| .-.+||.|+..|...+|...+.+. +.....|...|+-+.=..+ ...+..++.|.++++.+++-+...
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 355655 234899999999999999886543 3333444444432221112 234667788889998888655433
Q ss_pred eeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcC------------eEEeecCCCceEEEeeccCeEEEEE
Q psy17863 91 RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP------------IQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------------~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
.......-.+.++.++++++++++.+....|..|.+....... ........+..++++..||.+.+||
T Consensus 152 ~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~D 231 (344)
T KOG4532|consen 152 FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYD 231 (344)
T ss_pred ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEE
Confidence 3322222337889999999999999999999999887654322 2233344556899999999999999
Q ss_pred ccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCC--EEEEeecCCeEEEEe
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQ--CILTCSTDECLRLFD 236 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~i~d 236 (341)
++............ .+.|.+.+..+.|++.|. +|+..-.=+.+.+.|
T Consensus 232 VR~~~tpm~~~sst-------------------------------rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 232 VRNMATPMAEISST-------------------------------RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred ecccccchhhhccc-------------------------------CCCCCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence 98765443332111 112455666666776442 344444456788888
Q ss_pred ccccceeeee
Q psy17863 237 KATGELLEEY 246 (341)
Q Consensus 237 ~~~~~~~~~~ 246 (341)
+++++..+.+
T Consensus 281 ~R~~~~~q~I 290 (344)
T KOG4532|consen 281 TRNYVNHQVI 290 (344)
T ss_pred cccCceeeEE
Confidence 8887654443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.2e-08 Score=76.76 Aligned_cols=220 Identities=15% Similarity=0.190 Sum_probs=131.8
Q ss_pred CCeEEEEcCCCcceeeEecCcccceeEEE--EecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcE
Q psy17863 34 DKKIKLWNPYRNLLLKTYGGHAHEVNDAT--AACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSV 111 (341)
Q Consensus 34 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 111 (341)
+|+|..||..+++.+....- ........ ..+++..+++++.++.+..||..+|+.+..+.. ...+...... ++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV-DGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE-ETTE
T ss_pred CCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee-cccc
Confidence 68999999999999888753 11122222 333567788888999999999999998877664 2221111111 2344
Q ss_pred EEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEc-cCCcceeeeEeeecCceEEEEEECCCCceEE
Q psy17863 112 VISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQL-VDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 190 (341)
Q Consensus 112 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (341)
++.++.++.+..+|.++++ .+|.. ......
T Consensus 79 v~v~~~~~~l~~~d~~tG~------------------------~~W~~~~~~~~~------------------------- 109 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGK------------------------VLWSIYLTSSPP------------------------- 109 (238)
T ss_dssp EEEEETTSEEEEEETTTSC------------------------EEEEEEE-SSCT-------------------------
T ss_pred cccccceeeeEecccCCcc------------------------eeeeeccccccc-------------------------
Confidence 5555566677777766554 12221 110000
Q ss_pred EeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCccccee---------EEEEEeC
Q psy17863 191 SACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDF---------RIECCLD 261 (341)
Q Consensus 191 ~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---------~~~~~~~ 261 (341)
...........++..++++..++.|..+|+++|+.+........... ... ...
T Consensus 110 -----------------~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~-~~~ 171 (238)
T PF13360_consen 110 -----------------AGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGS-PVI 171 (238)
T ss_dssp -----------------CSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEE-EEC
T ss_pred -----------------cccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccc-eEE
Confidence 00011111222266788888899999999999999887765442210 111 122
Q ss_pred CCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccC
Q psy17863 262 SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 262 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~ 329 (341)
.++ .++.++.++.+.-+|+.+++.+.... ...+..+ ..+++..|+.++ ++.|..||+.++..
T Consensus 172 ~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~----~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 172 SDG-RVYVSSGDGRVVAVDLATGEKLWSKP----ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp CTT-EEEEECCTSSEEEEETTTTEEEEEEC----SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred ECC-EEEEEcCCCeEEEEECCCCCEEEEec----CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 344 77777777754444999998664222 2223321 346777888887 99999999988753
|
... |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.4e-08 Score=90.28 Aligned_cols=215 Identities=11% Similarity=0.132 Sum_probs=126.5
Q ss_pred EEEEEEccCCCEEEEEe-CCCeEEEEcCCCcceeeEecCc-----------------ccceeEEEEec-CCCEEEEecCC
Q psy17863 16 IRAVRFNVDGSYCLTCG-SDKKIKLWNPYRNLLLKTYGGH-----------------AHEVNDATAAC-DSSQIASGASD 76 (341)
Q Consensus 16 v~~~~~~~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~d 76 (341)
...++++++++.|+.+. ..+.|+++|..++. +.++.+- -..-..++++| ++..+++.+.+
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 57889999888666554 45789999987654 3333210 01235789999 55666777788
Q ss_pred CcEEEEECCCCceeeeecc---------------cCccEEEEEEcCCCcEE-EEecCCCeEEEEEecCCCCcCeEEeecC
Q psy17863 77 KSVILWEVTTGQPVRRWRE---------------HASKVTCVKFNEDSSVV-ISGSQDNTVMMWDVKSRSHHPIQCCLDS 140 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 140 (341)
+.|++||..++... .+.+ .-.....++++|+++.| ++-+.++.|++||+.++..
T Consensus 705 ~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~--------- 774 (1057)
T PLN02919 705 HQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS--------- 774 (1057)
T ss_pred CeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE---------
Confidence 99999998776432 1111 01234568888887744 4445567888888765431
Q ss_pred CCceEEEeec----cCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEE
Q psy17863 141 KDSQIFCGSS----DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACF 216 (341)
Q Consensus 141 ~~~~~~~~~~----~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 216 (341)
.+++++. +......+. ++ . ...........+++
T Consensus 775 ---~~~~gg~~~~~~~l~~fG~~-------------------------dG---------~------g~~~~l~~P~Gvav 811 (1057)
T PLN02919 775 ---RLLAGGDPTFSDNLFKFGDH-------------------------DG---------V------GSEVLLQHPLGVLC 811 (1057)
T ss_pred ---EEEEecccccCcccccccCC-------------------------CC---------c------hhhhhccCCceeeE
Confidence 0111100 000000000 00 0 00000112346777
Q ss_pred ccCCCEEEEeecCCeEEEEeccccceeeeec-------------CcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 217 TRDCQCILTCSTDECLRLFDKATGELLEEYK-------------GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 217 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
+++|+.+++-..++.|++||..++....... +.-.....+ +++++|+.+++-+.++.|++||+.+
T Consensus 812 d~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GI--avd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 812 AKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGL--ALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred eCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEE--EEeCCCCEEEEECCCCEEEEEECCC
Confidence 8888877777788888888887665432211 011123344 7889999888889999999999988
Q ss_pred CCc
Q psy17863 284 SSQ 286 (341)
Q Consensus 284 ~~~ 286 (341)
++.
T Consensus 890 ~~~ 892 (1057)
T PLN02919 890 GEA 892 (1057)
T ss_pred Ccc
Confidence 765
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.3e-09 Score=82.30 Aligned_cols=93 Identities=10% Similarity=0.157 Sum_probs=77.3
Q ss_pred EEEEcCCCcceeeEecCcccceeEEEEecCCC-EEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcC-CCcEEEE
Q psy17863 37 IKLWNPYRNLLLKTYGGHAHEVNDATAACDSS-QIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNE-DSSVVIS 114 (341)
Q Consensus 37 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 114 (341)
++..+..+.+....+..+...|..++|+|..+ ++..++.+..|+|.|+++...+..+..+ ..+++++|.- +.++++.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 55555555555556677888999999999777 7888899999999999999998888877 7899999986 4567888
Q ss_pred ecCCCeEEEEEecCCC
Q psy17863 115 GSQDNTVMMWDVKSRS 130 (341)
Q Consensus 115 ~~~d~~i~iwd~~~~~ 130 (341)
|..+|.|.+||++..+
T Consensus 254 Gl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPE 269 (463)
T ss_pred eccCceEEEEEccCCC
Confidence 8899999999998765
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=4e-11 Score=103.11 Aligned_cols=124 Identities=16% Similarity=0.295 Sum_probs=97.6
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCC--cEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDK--SVI 80 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~ 80 (341)
|+..++++.|+..-+|++|+-+.+.|+.|+..|.|+++++.+|.......+|..+|+.+.-+.||..+++.+.-. ...
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 567788999999999999999999999999999999999999999999999999999999999999877765432 467
Q ss_pred EEECCC-CceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC
Q psy17863 81 LWEVTT-GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 130 (341)
Q Consensus 81 iw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 130 (341)
+|++.+ +...+++. .-.++.|+...+.-+.|+......+||+.+..
T Consensus 1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred HhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCc
Confidence 899754 34444443 23567887654444555555567777777654
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-07 Score=68.51 Aligned_cols=134 Identities=11% Similarity=0.054 Sum_probs=88.1
Q ss_pred CCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEE
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVK 104 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 104 (341)
|++++.|+..|.+++-+..+|.+...+.....--......+++..+..++.|++.+..|..+..++.+.+...+...+-+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~ 142 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPV 142 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccce
Confidence 56788899999999999999988887764433333345677899999999999999999999998888776555555556
Q ss_pred EcCCCcEEEEecCCCeEEEEEecCCCC---------cCeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 105 FNEDSSVVISGSQDNTVMMWDVKSRSH---------HPIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 105 ~~~~~~~l~~~~~d~~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
..|-...|+.+...|.+.--..+.... .++.....--...+..++-||.+.-++
T Consensus 143 i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~ 205 (354)
T KOG4649|consen 143 IAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFD 205 (354)
T ss_pred ecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEc
Confidence 666333455555556655544444321 111111111233455556666666666
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-10 Score=88.10 Aligned_cols=85 Identities=14% Similarity=0.259 Sum_probs=72.6
Q ss_pred CCCCeEEEEEcc-CCCEEEEeecCCeEEEEeccccce---eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeee
Q psy17863 207 GQEPIVDACFTR-DCQCILTCSTDECLRLFDKATGEL---LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 282 (341)
Q Consensus 207 ~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (341)
|...++++..-. ++++|++.+.+|.|++||.+.-++ +..+.+|.+....+.+...+....+++++.|...+||.++
T Consensus 297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence 355677776666 778899999999999999887666 8899999887766766788888899999999999999999
Q ss_pred CCCceEEEE
Q psy17863 283 DSSQISTLI 291 (341)
Q Consensus 283 ~~~~~~~~~ 291 (341)
++.++.+++
T Consensus 377 ~ghLl~tip 385 (425)
T KOG2695|consen 377 SGHLLCTIP 385 (425)
T ss_pred cCceeeccC
Confidence 999998887
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-09 Score=83.41 Aligned_cols=151 Identities=14% Similarity=0.189 Sum_probs=104.0
Q ss_pred EEEEEECCCCceEEEeCC-CceEEEEcccccC----------CCCeEEEEEccCCCEEEEeecCC---eEEEEeccccce
Q psy17863 177 VNSLCSHPTRKHIMSACG-NNVKLWTAEEDYG----------QEPIVDACFTRDCQCILTCSTDE---CLRLFDKATGEL 242 (341)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~----------~~~i~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~ 242 (341)
......++.+++++++.. ....++++..... ...-+.+.+..+......+..-| .+.+|+...+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~- 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR- 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC-
Confidence 344556777777777765 3444666554432 12223344444444444443333 44555544433
Q ss_pred eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEE
Q psy17863 243 LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKL 321 (341)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~v 321 (341)
...+-||-..++.+ +++||+++++++..|..|++-.+.....+..+.. +|..-|..++.-++. .|++++ |+++++
T Consensus 144 ~~~~lGhvSml~dV--avS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl-GH~eFVS~isl~~~~-~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 144 CEPILGHVSMLLDV--AVSPDDQFIITADRDEKIRVSRYPATFVIESFCL-GHKEFVSTISLTDNY-LLLSGSGDKTLRL 219 (390)
T ss_pred cchhhhhhhhhhee--eecCCCCEEEEecCCceEEEEecCcccchhhhcc-ccHhheeeeeeccCc-eeeecCCCCcEEE
Confidence 34556788888877 8999999999999999999998877777777664 799999999987765 477777 999999
Q ss_pred EEcccccCCcc
Q psy17863 322 WTAEEDYGQAG 332 (341)
Q Consensus 322 w~~~~~~~~~~ 332 (341)
||+.++.....
T Consensus 220 Wd~~sgk~L~t 230 (390)
T KOG3914|consen 220 WDITSGKLLDT 230 (390)
T ss_pred EecccCCcccc
Confidence 99999876643
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-08 Score=87.10 Aligned_cols=114 Identities=7% Similarity=0.077 Sum_probs=92.3
Q ss_pred CCcEEEEEEccCCCEEEEEeC----CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCc
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGS----DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 88 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~----dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 88 (341)
.+.-+-.+|+|..+++|+++. .|+|.||- ++|++.+... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+
T Consensus 15 davsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE 92 (1416)
T ss_pred cccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCce
Confidence 344455679999999998864 68899986 4666544332 22346779999998889999999999999988777
Q ss_pred eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC
Q psy17863 89 PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 128 (341)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 128 (341)
.......|+.+|..+.|+++|..++++..-|.+.+|....
T Consensus 93 ~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 93 THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 6666677999999999999999999999999999998764
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=58.56 Aligned_cols=39 Identities=28% Similarity=0.585 Sum_probs=36.9
Q ss_pred cceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 45 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 45 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
++++.++++|...|++++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-06 Score=79.08 Aligned_cols=228 Identities=10% Similarity=0.109 Sum_probs=141.0
Q ss_pred cccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEec--CCCC
Q psy17863 54 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK--SRSH 131 (341)
Q Consensus 54 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~--~~~~ 131 (341)
....|.++.|..+...++.+..+|.|.+-|.++.... ....-...|.+++|+||++.++..+..+++.+-.-. --..
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 3368999999999999999999999999988775432 222346789999999999999999888877664421 1111
Q ss_pred cCeEEeecCCCceEEEeeccCeEEEEEccCCcceeee--------EeeecCceEEEEEECCCCceEEEe-----CC-Cce
Q psy17863 132 HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL--------IHSVGKAVVNSLCSHPTRKHIMSA-----CG-NNV 197 (341)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~i 197 (341)
.+. .......+..+.++....-.-+.-..++....- ....-...-.++.|.-+|+++++. .+ ..+
T Consensus 146 ~~L-~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 146 KPL-DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccc-ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 111 111222233344443332211211111110000 000011234579999999999983 35 789
Q ss_pred EEEEccccc------CCCCeEEEEEccCCCEEEEee---cCCeEEEEeccc---cceeeeecCcccceeEEEEEeCCCCC
Q psy17863 198 KLWTAEEDY------GQEPIVDACFTRDCQCILTCS---TDECLRLFDKAT---GELLEEYKGHKSGDFRIECCLDSKDS 265 (341)
Q Consensus 198 ~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~---~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (341)
++|+.+... ....-.+++|-|.|..+++-. .|+.|.+|..+. ++..-.+.....++..+ +|+.++.
T Consensus 225 rV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L--~Wns~sd 302 (1265)
T KOG1920|consen 225 RVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL--AWNSNSD 302 (1265)
T ss_pred EEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee--eecCCCC
Confidence 999988322 334457899999999888743 455799998432 22222233233335555 8999998
Q ss_pred EEEE---ecCCCcEEEEeeeCCC
Q psy17863 266 QIFC---GSSDGKIYKWQLVDSS 285 (341)
Q Consensus 266 ~l~~---~~~dg~i~iwd~~~~~ 285 (341)
.|+. ......|++|-+.+-.
T Consensus 303 iLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ceeeeecccccceEEEEEecCeE
Confidence 8887 4555569999876653
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-09 Score=90.81 Aligned_cols=125 Identities=19% Similarity=0.395 Sum_probs=99.9
Q ss_pred eeEEeeeCCcEEEEEEccCC-CEEEEEeCCCeEEEEcCCCcc-eeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 6 VQTIDCKQGAIRAVRFNVDG-SYCLTCGSDKKIKLWNPYRNL-LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
...+.+|...|+.+-|+|.. ..+++++.|-.+..||+.+.. .+..+..-......++|+.....+.+.+..+.|.+||
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd 186 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD 186 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence 34678999999999999965 588999999999999988753 4444544455677889988665666667778899999
Q ss_pred CCCC-ceeeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCC
Q psy17863 84 VTTG-QPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRS 130 (341)
Q Consensus 84 ~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~ 130 (341)
.+.| .++..+++|...|..+.|+. ....+.+.+.|++|+.||.....
T Consensus 187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 9876 56788889999999999976 44568888999999999987643
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-07 Score=75.15 Aligned_cols=86 Identities=14% Similarity=0.205 Sum_probs=73.9
Q ss_pred CceeeeEEeeeCCcEEEEEEccCCC-EEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCC-CEEEEecCCCcE
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDS-SQIASGASDKSV 79 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i 79 (341)
.++..+.+.+|...|..++|||..+ ++..++.+..|+|.|+++...+..+..+ ..+.+++|.-|. +++..|..+|.|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence 4566677888999999999999877 7888899999999999999998888877 789999998765 567788889999
Q ss_pred EEEECCCCc
Q psy17863 80 ILWEVTTGQ 88 (341)
Q Consensus 80 ~iw~~~~~~ 88 (341)
.+||++..+
T Consensus 261 lvyD~R~~~ 269 (463)
T KOG1645|consen 261 LVYDMRQPE 269 (463)
T ss_pred EEEEccCCC
Confidence 999998653
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.8e-08 Score=72.63 Aligned_cols=193 Identities=19% Similarity=0.298 Sum_probs=112.5
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEcCCCcc------------eeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL------------LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 16 v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
|+.+.++.+- .|+++..++.+......++. +.+.+..|.++-.+-+.+-.++.++++..||.+.+.+
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 5666665443 56776666666655533322 2333333444433334444567899999999999999
Q ss_pred CCCCcee-eeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 84 VTTGQPV-RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 84 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
.+.-..+ .........-.+.++...++.+.++. +-.|+.. +..+.|+++..
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~----~g~~n~~------------------------d~~~a~~~~p~ 169 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGG----CGNWNAQ------------------------DNFYANTLDPI 169 (319)
T ss_pred chHHHhhhhhcccccccccccceeecccEEecCC----cceEeec------------------------cceeeeccccc
Confidence 7652111 11111111111222223444444432 2223222 23344544433
Q ss_pred cceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc--------CCCCeEEEEEcc-CCCEEEEeecCCe
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY--------GQEPIVDACFTR-DCQCILTCSTDEC 231 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~--------~~~~i~~~~~~~-~~~~l~~~~~d~~ 231 (341)
+.+..-.. ....+.+++-+|..+.++..+ ++.+-+||.+... |+.++..+-|+| ++..|+++++||.
T Consensus 170 ~t~~~~~~--~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs 247 (319)
T KOG4714|consen 170 KTLIPSKK--ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS 247 (319)
T ss_pred cccccccc--ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc
Confidence 32222221 122388999999877665544 4889999998754 888999999999 5788999999999
Q ss_pred EEEEeccc
Q psy17863 232 LRLFDKAT 239 (341)
Q Consensus 232 i~i~d~~~ 239 (341)
+..||..+
T Consensus 248 lw~wdas~ 255 (319)
T KOG4714|consen 248 LWHWDAST 255 (319)
T ss_pred EEEEcCCC
Confidence 99999763
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.6e-06 Score=66.66 Aligned_cols=252 Identities=10% Similarity=0.076 Sum_probs=149.3
Q ss_pred CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC----------CCcEEEEECCCCceeeeecccCc------
Q psy17863 35 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS----------DKSVILWEVTTGQPVRRWREHAS------ 98 (341)
Q Consensus 35 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~~~~------ 98 (341)
+.+.++|..+++.+..+.. +-.-.+..+|+++.+.++.. .-.|.+||..+.++...+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999888777653 23344667999998887532 33599999998877665432221
Q ss_pred -cEEEEEEcCCCcEEEEe--cCCCeEEEEEecCCCC-------cCeEEeecCCCceEEEeeccCeEEEEEccCCcceeee
Q psy17863 99 -KVTCVKFNEDSSVVISG--SQDNTVMMWDVKSRSH-------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 168 (341)
Q Consensus 99 -~v~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 168 (341)
....++++.|+++++.. +--..|.+.|+..++. .+..... ..+..+.+-+.||.+....+.........
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP-~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYP-SGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEE-EETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEe-cCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 12235677788877664 3345678888777652 1122222 22346888999999999988843333211
Q ss_pred Eee---ecCc-eEEEEEE-CCCCceEEEeCCCceEEEEccccc-------------------CCCCeEEEEEccCCCEEE
Q psy17863 169 IHS---VGKA-VVNSLCS-HPTRKHIMSACGNNVKLWTAEEDY-------------------GQEPIVDACFTRDCQCIL 224 (341)
Q Consensus 169 ~~~---~~~~-~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~-------------------~~~~i~~~~~~~~~~~l~ 224 (341)
... .... .+..-++ ...+.++..+..|.++-.++.... ..+...-+++++..+.|+
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY 253 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence 110 0111 1222222 234456667777777776665432 223445577777655554
Q ss_pred Eeec---C-------CeEEEEeccccceeeeecCcccceeEEEEEeCCCCC-EEEEe-cCCCcEEEEeeeCCCceEEEEe
Q psy17863 225 TCST---D-------ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS-QIFCG-SSDGKIYKWQLVDSSQISTLIH 292 (341)
Q Consensus 225 ~~~~---d-------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~ 292 (341)
+--. + ..|.++|+.+++.+..+... .++.++ ..+.+.+ +|++. ..++.+.+||..+|+.+.++..
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si--~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSI--AVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEE--EEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceE--EEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 4221 1 24888899999998888742 345556 5555554 55544 5689999999999999998874
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.6e-07 Score=71.49 Aligned_cols=199 Identities=18% Similarity=0.224 Sum_probs=113.7
Q ss_pred cCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeee-cccCc---
Q psy17863 23 VDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW-REHAS--- 98 (341)
Q Consensus 23 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~--- 98 (341)
+++..+++++.++.+..||..+|+.+.++.. ...+.... ..++..+++++.++.+..+|..+|+.+... .....
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 3566788878899999999999999888764 22222212 224556677778889999999999988774 32211
Q ss_pred cEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEE
Q psy17863 99 KVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN 178 (341)
Q Consensus 99 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~ 178 (341)
.........+++.++.+..++.|..+|+++++ .+|......... ...+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~------------------------~~w~~~~~~~~~-------~~~~~ 160 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGK------------------------LLWKYPVGEPRG-------SSPIS 160 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTE------------------------EEEEEESSTT-S-------S--EE
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCc------------------------EEEEeecCCCCC-------Cccee
Confidence 11112222235566666667777777766544 122221111000 00000
Q ss_pred EEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCe-EEEEeccccceeeeecCcccceeEEE
Q psy17863 179 SLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDEC-LRLFDKATGELLEEYKGHKSGDFRIE 257 (341)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~ 257 (341)
. ...+..-....++ .++.++.++. +.+ |+.+++.+.... ......
T Consensus 161 --~--------------------------~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~-- 206 (238)
T PF13360_consen 161 --S--------------------------FSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYS-- 206 (238)
T ss_dssp --E--------------------------ETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECE--
T ss_pred --e--------------------------ecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccC--
Confidence 0 0011111122233 5666666665 555 999888654333 222221
Q ss_pred EEeCCCCCEEEEecCCCcEEEEeeeCCCceEE
Q psy17863 258 CCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST 289 (341)
Q Consensus 258 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 289 (341)
.+...+..|+.++.++.+..||+.+++.+.+
T Consensus 207 -~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 207 -LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp -CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred -CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 2446677888888999999999999987653
|
... |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-06 Score=74.89 Aligned_cols=261 Identities=13% Similarity=0.118 Sum_probs=151.4
Q ss_pred CCEEEEEeCCCeEEEEcCCCcceeeEecCccc------cee--EEEEecCCCEEEEecCCCcEEEEECCCCceeeeeccc
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH------EVN--DATAACDSSQIASGASDKSVILWEVTTGQPVRRWREH 96 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 96 (341)
+..+..++.++.+.-.|..+++.+..++.... .+. .+... ++..++.++.++.|..+|.++|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34566777789999999999998877653322 110 01111 2267888889999999999999998777543
Q ss_pred Ccc--EEEEEEcC--CCcEEEEec---------CCCeEEEEEecCCCCcCeEE---------------------------
Q psy17863 97 ASK--VTCVKFNE--DSSVVISGS---------QDNTVMMWDVKSRSHHPIQC--------------------------- 136 (341)
Q Consensus 97 ~~~--v~~~~~~~--~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~--------------------------- 136 (341)
... -..+.-+| .+..++.++ .++.+..+|..+++..-...
T Consensus 140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 221 00111122 123454443 35778888877765211110
Q ss_pred ---eecCCCceEEEeeccC------------------eEEEEEccCCcceeeeEeeecCc---------eEEEEEECCCC
Q psy17863 137 ---CLDSKDSQIFCGSSDG------------------KIYKWQLVDSSQISTLIHSVGKA---------VVNSLCSHPTR 186 (341)
Q Consensus 137 ---~~~~~~~~~~~~~~~g------------------~i~~~d~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 186 (341)
......+.++.++.++ .+.-+|..+++.........+.. .+..+. .-++
T Consensus 220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g 298 (488)
T cd00216 220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDG 298 (488)
T ss_pred CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCC
Confidence 1112346777887665 79999999999887765322110 011110 0122
Q ss_pred c---eEEEeC-CCceEEEEcccccCC----CCeEEEEEccCCCEEEEe------------------ecCCeEEEEecccc
Q psy17863 187 K---HIMSAC-GNNVKLWTAEEDYGQ----EPIVDACFTRDCQCILTC------------------STDECLRLFDKATG 240 (341)
Q Consensus 187 ~---~~~~~~-~~~i~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~------------------~~d~~i~i~d~~~~ 240 (341)
. .++.++ ++.+..+|..+.... .....++.+| ..++.+ ..+|.+.-.|+.+|
T Consensus 299 ~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG 376 (488)
T cd00216 299 KPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG 376 (488)
T ss_pred CeeEEEEEECCCceEEEEECCCCcEeeEeEeeccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence 2 333333 466766666554310 0011233344 333332 24678999999999
Q ss_pred ceeeeecCcc--------cceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 241 ELLEEYKGHK--------SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 241 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
+.+-+..... .+...- .....+..++.++.||.++.+|..+|+.+.+.+
T Consensus 377 ~~~W~~~~~~~~~~~~~g~~~~~~--~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 377 KVVWEKREGTIRDSWNIGFPHWGG--SLATAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred cEeeEeeCCccccccccCCcccCc--ceEecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 8877665331 111100 111245689999999999999999999998877
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.2e-06 Score=70.06 Aligned_cols=283 Identities=15% Similarity=0.137 Sum_probs=150.9
Q ss_pred ccCCCEEEEEe---------CCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeee
Q psy17863 22 NVDGSYCLTCG---------SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 92 (341)
Q Consensus 22 ~~~~~~l~t~~---------~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 92 (341)
|||+++++... ..+.+.+||+++++...... ....+....|+|+|+.++... ++.|.+++..+++..+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 68888877642 24679999998866444333 367889999999999988875 47799999877744332
Q ss_pred ec-c-------c---------CccEEEEEEcCCCcEEEEecCC-CeEEEEEec---CCCC--cCeEEeecCCCceEEEee
Q psy17863 93 WR-E-------H---------ASKVTCVKFNEDSSVVISGSQD-NTVMMWDVK---SRSH--HPIQCCLDSKDSQIFCGS 149 (341)
Q Consensus 93 ~~-~-------~---------~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd~~---~~~~--~~~~~~~~~~~~~~~~~~ 149 (341)
-. + - -+.-..+.|+||+++|+....| ..|..+.+. .... ........+. +|.
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk-----~G~ 153 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPK-----AGD 153 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--B-----TTS
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCC-----CCC
Confidence 11 1 0 1123568899999999877544 334443332 2211 1111111111 122
Q ss_pred cc--CeEEEEEccCCcceeeeEe---eecCceEEEEEECCCCceEEE-eCC---C--ceEEEEccccc--------CCC-
Q psy17863 150 SD--GKIYKWQLVDSSQISTLIH---SVGKAVVNSLCSHPTRKHIMS-ACG---N--NVKLWTAEEDY--------GQE- 209 (341)
Q Consensus 150 ~~--g~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~---~--~i~~~~~~~~~--------~~~- 209 (341)
.+ -.+.++|+.+++....... ......+..+.|.++++.++. ..+ + .+.++|..... ...
T Consensus 154 ~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~W 233 (353)
T PF00930_consen 154 PNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGW 233 (353)
T ss_dssp ---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSS
T ss_pred cCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcc
Confidence 22 2466788877765422211 234566889999999984433 322 2 34455554322 111
Q ss_pred --CeEEEEEc-cCC-CEEEEeecCCe--EEEEeccccceeeeecCcccceeEEEEEeCCCCCEEE-EecCC--CcEEEE-
Q psy17863 210 --PIVDACFT-RDC-QCILTCSTDEC--LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIF-CGSSD--GKIYKW- 279 (341)
Q Consensus 210 --~i~~~~~~-~~~-~~l~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d--g~i~iw- 279 (341)
......+. +++ .++.....+|. |.+++...+. ...+....-.|..+ ..++++++.|+ ++..+ +.-.+|
T Consensus 234 v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i-~~~d~~~~~iyf~a~~~~p~~r~lY~ 311 (353)
T PF00930_consen 234 VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSI-LGWDEDNNRIYFTANGDNPGERHLYR 311 (353)
T ss_dssp SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEE-EEEECTSSEEEEEESSGGTTSBEEEE
T ss_pred eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeeccc-ceEcCCCCEEEEEecCCCCCceEEEE
Confidence 12244444 554 45555556665 5555655444 33444444445443 26777766544 44432 344444
Q ss_pred -eeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC
Q psy17863 280 -QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 280 -d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
++..+..+..+. .....-..+.|||++++++...
T Consensus 312 v~~~~~~~~~~LT--~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 312 VSLDSGGEPKCLT--CEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp EETTETTEEEESS--TTSSTTEEEEE-TTSSEEEEEE
T ss_pred EEeCCCCCeEecc--CCCCCceEEEECCCCCEEEEEE
Confidence 444234455554 1222225899999999887654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.8e-07 Score=76.26 Aligned_cols=117 Identities=15% Similarity=0.233 Sum_probs=91.8
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeE-ecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCcee
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKT-YGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV 90 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 90 (341)
|...|.--+++..+++++.|++-|.+++|+-..++.... ..+..+.+..+..+++..++|.|+..|.|.++-+..+.+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 455666677778899999999999999999766554332 2234556667788888889999999999999988764321
Q ss_pred e-----ee-cccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC
Q psy17863 91 R-----RW-REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 128 (341)
Q Consensus 91 ~-----~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 128 (341)
. .. +.|+..|++++|++++..+++|...|+|..-.+..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1 11 23788999999999999999999999999988877
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.2e-06 Score=66.13 Aligned_cols=221 Identities=15% Similarity=0.192 Sum_probs=140.4
Q ss_pred eeEEEEec-CCCEEEEecCCCc-EEEEECCCCceeeeecccCccE--EEEEEcCCCcEEEEecCCCeEEEEEecCCCCcC
Q psy17863 58 VNDATAAC-DSSQIASGASDKS-VILWEVTTGQPVRRWREHASKV--TCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP 133 (341)
Q Consensus 58 v~~~~~~~-~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 133 (341)
...++.+| ....++.+-.-|+ ..+||..+++....+....+.- -.-.|++||++|++.-.| .+
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd-------~~------ 73 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEND-------YE------ 73 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccc-------cC------
Confidence 44577888 4555666666555 6789999998877665433221 236899999999987543 11
Q ss_pred eEEeecCCCceEEEeeccCeEEEEEcc-CCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeE
Q psy17863 134 IQCCLDSKDSQIFCGSSDGKIYKWQLV-DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIV 212 (341)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~g~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 212 (341)
...|.|-+||.. ..+.+.++.. +.-....+.+.|+++.|+++.+|.-
T Consensus 74 ---------------~g~G~IgVyd~~~~~~ri~E~~s--~GIGPHel~l~pDG~tLvVANGGI~--------------- 121 (305)
T PF07433_consen 74 ---------------TGRGVIGVYDAARGYRRIGEFPS--HGIGPHELLLMPDGETLVVANGGIE--------------- 121 (305)
T ss_pred ---------------CCcEEEEEEECcCCcEEEeEecC--CCcChhhEEEcCCCCEEEEEcCCCc---------------
Confidence 234667777766 3333333332 2233567889999988888866532
Q ss_pred EEEEccCC--CEEEEeecCCeEEEEeccccceeee--e--cCcccceeEEEEEeCCCCCEEEEecCCCc-------EEEE
Q psy17863 213 DACFTRDC--QCILTCSTDECLRLFDKATGELLEE--Y--KGHKSGDFRIECCLDSKDSQIFCGSSDGK-------IYKW 279 (341)
Q Consensus 213 ~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-------i~iw 279 (341)
-+|+. ..|=..+.+..+.+.|..+|+.+.. + ..|...+.-+ ++.++|..++..-..|. +.++
T Consensus 122 ---Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHL--a~~~~G~V~~a~Q~qg~~~~~~PLva~~ 196 (305)
T PF07433_consen 122 ---THPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHL--AVDGDGTVAFAMQYQGDPGDAPPLVALH 196 (305)
T ss_pred ---cCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeE--EecCCCcEEEEEecCCCCCccCCeEEEE
Confidence 22321 2244455677788888888988776 4 2366666666 78888866665533332 3333
Q ss_pred eeeCCCceEEEEe-----eeeccceEEEEEcCCCcEEEEeC--CCcEEEEEcccccCC
Q psy17863 280 QLVDSSQISTLIH-----SVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 280 d~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~~~~~ 330 (341)
+ .++.+..+.. ..-.+.+-++++++++..+++.+ .+.+.+||..++...
T Consensus 197 ~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 197 R--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred c--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence 3 3333333331 12346799999999999888888 889999998887544
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.7e-07 Score=77.57 Aligned_cols=200 Identities=14% Similarity=0.188 Sum_probs=134.8
Q ss_pred EEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccc-eeEEEEecCCCEEEEecCCC-----cEEEEECCCC------
Q psy17863 20 RFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE-VNDATAACDSSQIASGASDK-----SVILWEVTTG------ 87 (341)
Q Consensus 20 ~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~------ 87 (341)
+|++.+..++.|+.+|.|.+.+ ...+.+..++.+... |..+....+..+|++.+.|+ .+++|+++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 4668888999999999998888 344555778877777 55554444446788877664 4899998643
Q ss_pred cee---eeec----ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEcc
Q psy17863 88 QPV---RRWR----EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLV 160 (341)
Q Consensus 88 ~~~---~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~ 160 (341)
+++ +.+. ....++.+++.+.+-+.+++|-.+|.|..+.=+- .
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi-------------------------------~ 157 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDI-------------------------------L 157 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcc-------------------------------h
Confidence 222 1111 1356778888888888888888888877664211 1
Q ss_pred CCcceeeeEeeecCceEEEEEECCCCce-EEEeCCCceEEEEccccc--------CCCCeEEEEEccCCCEEEEeecCCe
Q psy17863 161 DSSQISTLIHSVGKAVVNSLCSHPTRKH-IMSACGNNVKLWTAEEDY--------GQEPIVDACFTRDCQCILTCSTDEC 231 (341)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~ 231 (341)
..+-.+....+.+..+|+.+++..+++. +.+++...|.+|.+.... ++.+..|.++++....+++++ +..
T Consensus 158 RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~ 236 (933)
T KOG2114|consen 158 RDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEF 236 (933)
T ss_pred hccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-Cce
Confidence 1111123333446678999999988887 666677888888877543 456778888888766455544 347
Q ss_pred EEEEeccccceeeeec-Ccccc
Q psy17863 232 LRLFDKATGELLEEYK-GHKSG 252 (341)
Q Consensus 232 i~i~d~~~~~~~~~~~-~~~~~ 252 (341)
+.+|+.....+...|. +|...
T Consensus 237 l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 237 LYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred EEEEcCCCcceeeeecCCCeEE
Confidence 9999988766666776 66644
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.3e-09 Score=80.30 Aligned_cols=148 Identities=11% Similarity=0.113 Sum_probs=108.1
Q ss_pred CceEEEeCCCceEEEEccccc-----CCCCeEEEEEccCCCEEEEeecCCeEEEEecccc-----ceeeeecCcccceeE
Q psy17863 186 RKHIMSACGNNVKLWTAEEDY-----GQEPIVDACFTRDCQCILTCSTDECLRLFDKATG-----ELLEEYKGHKSGDFR 255 (341)
Q Consensus 186 ~~~~~~~~~~~i~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~ 255 (341)
+..+.++.+..+-+-+++++. ....|.++.|...++++..|+.+|.|..+|++.+ .+...+. |.+.+++
T Consensus 225 gyhfs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvts 303 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS 303 (425)
T ss_pred eeeecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence 444556666778888887765 4567788889988999999999999999999865 2333333 7777777
Q ss_pred EEEEeCCCCCEEEEecCCCcEEEEeeeCCCc---eEEEEeeeeccceEE--EEEcCCCcEEEEeC-CCcEEEEEcccccC
Q psy17863 256 IECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ---ISTLIHSVGKAVVNS--LCSHPTRKHIMSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 256 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~-d~~i~vw~~~~~~~ 329 (341)
+.. ..-++++|.+.+.+|+|++||.+--++ +.+.. +|...-.- +-..+....+++++ |-..|||.++.+..
T Consensus 304 lq~-Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe--GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 304 LQI-LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE--GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL 380 (425)
T ss_pred hhh-hccccceEeeccCcCceeEeeehhhhcccceeeee--cccccccccccccccccceEEEccCeeEEEEEecccCce
Confidence 742 333677899999999999999987766 66666 66443222 23455667777888 99999999998876
Q ss_pred Cccceeee
Q psy17863 330 QAGLSSLY 337 (341)
Q Consensus 330 ~~~~~~~~ 337 (341)
..+++..|
T Consensus 381 l~tipf~~ 388 (425)
T KOG2695|consen 381 LCTIPFPY 388 (425)
T ss_pred eeccCCCC
Confidence 66665544
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-07 Score=75.00 Aligned_cols=232 Identities=13% Similarity=0.119 Sum_probs=156.2
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC---cceeeEecCcccceeEEEEecCCCEEEEecC-CCcEEEEECCCC
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR---NLLLKTYGGHAHEVNDATAACDSSQIASGAS-DKSVILWEVTTG 87 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~ 87 (341)
|.+.|+.+.-.. .+++.+++.||.++.|.... -+.+..+..|...|.+++.+.++.++.+.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 778888876544 56999999999999998543 2445566789999999999999999999777 999999999876
Q ss_pred ceeeeecc--cCccEEEEEEcCC-C--cEEEEecCCCeEEEEEecCCCC----------cCeEEee-cCCCceEEEeecc
Q psy17863 88 QPVRRWRE--HASKVTCVKFNED-S--SVVISGSQDNTVMMWDVKSRSH----------HPIQCCL-DSKDSQIFCGSSD 151 (341)
Q Consensus 88 ~~~~~~~~--~~~~v~~~~~~~~-~--~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~-~~~~~~~~~~~~~ 151 (341)
..+.-++. ..+.+. ...++. . ..-++.-.++.+.++|-....+ .++.... .+....+++....
T Consensus 87 DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred chhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 55433321 222221 111221 1 2223334568888888655331 2333333 3345567777788
Q ss_pred CeEEEEEccC-Cc-----ceeee-------EeeecCceEEEEEECCCCceEEEeCC-CceEEEEccccc-----------
Q psy17863 152 GKIYKWQLVD-SS-----QISTL-------IHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY----------- 206 (341)
Q Consensus 152 g~i~~~d~~~-~~-----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~----------- 206 (341)
|.|..|.... .+ ....+ .....+....++.++|++..+..... ..|+++.+.++.
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence 9999998873 11 11111 11223456789999999999887764 788888876532
Q ss_pred -----------------------------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeee
Q psy17863 207 -----------------------------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY 246 (341)
Q Consensus 207 -----------------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 246 (341)
....-+.+.|...|++|+-++.=| |++.++.+++..+.+
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 123456788999999999988765 888998887766554
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-05 Score=60.16 Aligned_cols=104 Identities=12% Similarity=0.106 Sum_probs=78.7
Q ss_pred CCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEE
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVK 104 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 104 (341)
..+++.|+..+.+.--|..+|+...+-. -..+|.+-+.- -|++++.|...|.+++.+..+|.....+.....-=....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4577788889999999999998776543 33344443333 467899999999999999999988877764333223345
Q ss_pred EcCCCcEEEEecCCCeEEEEEecCCC
Q psy17863 105 FNEDSSVVISGSQDNTVMMWDVKSRS 130 (341)
Q Consensus 105 ~~~~~~~l~~~~~d~~i~iwd~~~~~ 130 (341)
..+++..+..++.|++....|.++..
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccc
Confidence 66789999999999999999988754
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.8e-07 Score=68.67 Aligned_cols=154 Identities=13% Similarity=0.182 Sum_probs=90.9
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCccee-eEecCcccceeEEEEecCCCEEEEecC-----CCcEEE
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLL-KTYGGHAHEVNDATAACDSSQIASGAS-----DKSVIL 81 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i 81 (341)
.+..|+++-.+-+.+-.++.++++..||.+.+++.+.-..+ ..+..-...-.+.+....++.+.++.. -+..+.
T Consensus 84 ~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a 163 (319)
T KOG4714|consen 84 VLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYA 163 (319)
T ss_pred eeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceee
Confidence 33344444334444445677999999999999997652111 111111111122233334555554322 234566
Q ss_pred EECCCCceeeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCC---------CcCeEEeecC--CCceEEEee
Q psy17863 82 WEVTTGQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRS---------HHPIQCCLDS--KDSQIFCGS 149 (341)
Q Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~--~~~~~~~~~ 149 (341)
|+++..+.+..-+.....|++++-+| +.+.+++|+.||.+.+||.+... ..++....++ ....|++++
T Consensus 164 ~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s 243 (319)
T KOG4714|consen 164 NTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS 243 (319)
T ss_pred ecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec
Confidence 66654433222222334589999998 56678888999999999998753 1223333333 345899999
Q ss_pred ccCeEEEEEccC
Q psy17863 150 SDGKIYKWQLVD 161 (341)
Q Consensus 150 ~~g~i~~~d~~~ 161 (341)
+||.+-.||..+
T Consensus 244 edGslw~wdas~ 255 (319)
T KOG4714|consen 244 EDGSLWHWDAST 255 (319)
T ss_pred CCCcEEEEcCCC
Confidence 999999999775
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-07 Score=82.68 Aligned_cols=182 Identities=11% Similarity=0.120 Sum_probs=130.3
Q ss_pred CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEE
Q psy17863 24 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV 103 (341)
Q Consensus 24 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~ 103 (341)
++..++.|+....+..+|+.+.+..+...-..+.|+-+. .+++.+++|...|+|.+-|..+.+.+.++..|.+.|.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 345677777777888899888877766654444555544 368899999999999999999999999999999999876
Q ss_pred EEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEEC
Q psy17863 104 KFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH 183 (341)
Q Consensus 104 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (341)
.. .|+.|++++..+..... ..|.-+++||++..+.+..+..+.+. .-+.++
T Consensus 224 Dv--~GNlLitCG~S~R~~~l------------------------~~D~FvkVYDLRmmral~PI~~~~~P---~flrf~ 274 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNL------------------------AMDPFVKVYDLRMMRALSPIQFPYGP---QFLRFH 274 (1118)
T ss_pred ec--cCCeEEEeecccccccc------------------------cccchhhhhhhhhhhccCCcccccCc---hhhhhc
Confidence 66 58899999865432111 12455777777776666555443332 334455
Q ss_pred CC--CceEEEeCCCceEEEE---ccccc--------CCCCeEEEEEccCCCEEEEeecCCeEEEEe
Q psy17863 184 PT--RKHIMSACGNNVKLWT---AEEDY--------GQEPIVDACFTRDCQCILTCSTDECLRLFD 236 (341)
Q Consensus 184 ~~--~~~~~~~~~~~i~~~~---~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 236 (341)
|. .+.+++...|...+.| +.+.. ....+..+.++++++.++.|..+|.|.+|.
T Consensus 275 Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 275 PSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 53 3455555567777766 22221 234589999999999999999999999997
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-06 Score=75.48 Aligned_cols=206 Identities=11% Similarity=0.194 Sum_probs=130.2
Q ss_pred EEecCCCEEEEecCCCcEEEEECCCCceeeeecccCcc-EEEEEEcCCCcEEEEecCCCe-----EEEEEecCCCCcCeE
Q psy17863 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASK-VTCVKFNEDSSVVISGSQDNT-----VMMWDVKSRSHHPIQ 135 (341)
Q Consensus 62 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~-----i~iwd~~~~~~~~~~ 135 (341)
+|++.+..++.|+.+|.|.+.+ +.-+.++.++.+... |..+-...+..+|++.+.|+. +++|+++......
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~-- 106 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN-- 106 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC--
Confidence 4677888999999999988887 344555777777766 554444445578888877754 5666665432100
Q ss_pred EeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEE
Q psy17863 136 CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDAC 215 (341)
Q Consensus 136 ~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 215 (341)
.+... +..+++....+....++.+++
T Consensus 107 -------------------------sP~c~-----------------------------~~~ri~~~~np~~~~p~s~l~ 132 (933)
T KOG2114|consen 107 -------------------------SPQCL-----------------------------YEHRIFTIKNPTNPSPASSLA 132 (933)
T ss_pred -------------------------Cccee-----------------------------eeeeeeccCCCCCCCcceEEE
Confidence 00000 001111112222356788888
Q ss_pred EccCCCEEEEeecCCeEEEEecc---c-cceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc-eEEE
Q psy17863 216 FTRDCQCILTCSTDECLRLFDKA---T-GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ-ISTL 290 (341)
Q Consensus 216 ~~~~~~~l~~~~~d~~i~i~d~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~ 290 (341)
++.+-+.+|+|-.+|.|..+.-. . +....-......+|+.+ ++..++..++-......|.+|.+....+ ...+
T Consensus 133 Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL--~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~l 210 (933)
T KOG2114|consen 133 VSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGL--ALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVL 210 (933)
T ss_pred EEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceee--EEecCCceeEEEEecceeEEEEecCCCcceeee
Confidence 89888999999999999998521 1 11111122334678877 6666666533333345799999874332 2334
Q ss_pred EeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEccccc
Q psy17863 291 IHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 328 (341)
Q Consensus 291 ~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~~ 328 (341)
. .|...+.|-.+++....++.+++..+.+|+.++..
T Consensus 211 d--~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 211 D--NNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRG 246 (933)
T ss_pred c--cCCccceeeecCCCCccEEEecCceEEEEcCCCcc
Confidence 4 67888999999987776777778889999988654
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.5e-05 Score=63.46 Aligned_cols=265 Identities=12% Similarity=0.117 Sum_probs=127.6
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcce-------------------------------------------eeEe
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLL-------------------------------------------LKTY 51 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~-------------------------------------------~~~~ 51 (341)
.|+.+.|+++..-|++|...|.|.||.+...+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 589999999988999999999999996432211 1112
Q ss_pred cCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeee--cc------cCccEEEEEEcC-----CC---cEEEEe
Q psy17863 52 GGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW--RE------HASKVTCVKFNE-----DS---SVVISG 115 (341)
Q Consensus 52 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~------~~~~v~~~~~~~-----~~---~~l~~~ 115 (341)
....++|++++.+ |=-+++.|..+|.+.|.|++....+..- .. ....++++.|.- |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2345789999987 4558999999999999999776655442 11 234577777752 11 234444
Q ss_pred cCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEee--ecCceEEEEE-ECCCCceEEEe
Q psy17863 116 SQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS--VGKAVVNSLC-SHPTRKHIMSA 192 (341)
Q Consensus 116 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~ 192 (341)
...|.+.+|.+.-... +.....+... .....+..+. ++.+...-+.+
T Consensus 162 Tn~G~v~~fkIlp~~~------------------------------g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~A 211 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSN------------------------------GRFSVQFAGATTNHDSPILSIIPINADTGESALA 211 (395)
T ss_dssp ETTSEEEEEEEEE-GG------------------------------G-EEEEEEEEE--SS----EEEEEETTT--B-B-
T ss_pred eCCCCEEEEEEecCCC------------------------------CceEEEEeeccccCCCceEEEEEEECCCCCcccC
Confidence 4445554444321000 0000000000 0111111111 11110000000
Q ss_pred CCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEe-----CCCCCEE
Q psy17863 193 CGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCL-----DSKDSQI 267 (341)
Q Consensus 193 ~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l 267 (341)
....+ ........+ .-+++...+..++++...+.+..++.. .....+-.+++ ...+..|
T Consensus 212 t~~~~-----~~l~~g~~i---------~g~vVvvSe~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~L 275 (395)
T PF08596_consen 212 TISAM-----QGLSKGISI---------PGYVVVVSESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCL 275 (395)
T ss_dssp BHHHH-----HGGGGT-------------EEEEEE-SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEE
T ss_pred chhHh-----hccccCCCc---------CcEEEEEcccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEE
Confidence 00000 000000011 113333446689999988777655444 22222222233 2345678
Q ss_pred EEecCCCcEEEEeeeCCCceEEEEee--eeccceEEEEEcCCCcEEEEeCCCcEEEEEccc
Q psy17863 268 FCGSSDGKIYKWQLVDSSQISTLIHS--VGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 268 ~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
++-..+|.++++.+..-+.+..+... .....+....++++|..++-.+...+.++.+-.
T Consensus 276 v~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~ 336 (395)
T PF08596_consen 276 VCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWG 336 (395)
T ss_dssp EEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES
T ss_pred EEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCcccEEEEEEEc
Confidence 88889999999999998888777621 123456677789999988888755555555433
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-05 Score=67.83 Aligned_cols=266 Identities=7% Similarity=-0.017 Sum_probs=159.1
Q ss_pred EEEEeCCCeEEEEcCCCcceeeEecCcc-------------ccee-------EEEE--------e-----cCCCEEEEec
Q psy17863 28 CLTCGSDKKIKLWNPYRNLLLKTYGGHA-------------HEVN-------DATA--------A-----CDSSQIASGA 74 (341)
Q Consensus 28 l~t~~~dg~i~iw~~~~~~~~~~~~~~~-------------~~v~-------~~~~--------~-----~~~~~l~~~~ 74 (341)
|.+|+..|.++|+-+.+++.++.+...+ ..|. .+.| | .||++|+.-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 6688999999999988888776653111 1111 0111 1 1566676655
Q ss_pred C-CCcEEEEECCCCceeeeecc-cCccEEEEEEc--CCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCc-eE-EEe
Q psy17863 75 S-DKSVILWEVTTGQPVRRWRE-HASKVTCVKFN--EDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDS-QI-FCG 148 (341)
Q Consensus 75 ~-dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~-~~~ 148 (341)
. +..|..-+++..++-+.+.- ....+..+.+. |+..+++.+++.. ...++++ .+ ...
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~-----------------~PlpnDGk~l~~~~ 211 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFR-----------------IPLPNDGKDLDDPK 211 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccc-----------------cccCCCCCEeeccc
Confidence 3 45566666655544333321 23344555554 6777777766421 1111111 11 112
Q ss_pred eccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC---C--CceEEEEcccccCCCCeEEEEE-------
Q psy17863 149 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC---G--NNVKLWTAEEDYGQEPIVDACF------- 216 (341)
Q Consensus 149 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~i~~~~~~~~~~~~~i~~~~~------- 216 (341)
-..+.+.+.|..+.+...++.... ....+.++|+++++.+++ . ..+...+.... . ..+.|
T Consensus 212 ey~~~vSvID~etmeV~~qV~Vdg---npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~---d--~~vvfni~~iea 283 (635)
T PRK02888 212 KYRSLFTAVDAETMEVAWQVMVDG---NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER---D--WVVVFNIARIEE 283 (635)
T ss_pred ceeEEEEEEECccceEEEEEEeCC---CcccceECCCCCEEEEeccCcccCcceeeeccccC---c--eEEEEchHHHHH
Confidence 234566677877766655554432 356788999999998886 2 23333332211 1 23333
Q ss_pred -ccCCCEEEEeecCCeEEEEeccc-----cceeeeecCcccceeEEEEEeCCCCCEEEEec-CCCcEEEEeeeCCCc---
Q psy17863 217 -TRDCQCILTCSTDECLRLFDKAT-----GELLEEYKGHKSGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLVDSSQ--- 286 (341)
Q Consensus 217 -~~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--- 286 (341)
.++|++...+ ++.|.+.|..+ .+.+..+..... ...+ .++|||+++++++ .+.++.|.|+.+.+.
T Consensus 284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKs-PHGV--~vSPDGkylyVanklS~tVSVIDv~k~k~~~~ 358 (635)
T PRK02888 284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKN-PHGV--NTSPDGKYFIANGKLSPTVTVIDVRKLDDLFD 358 (635)
T ss_pred hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCC-ccce--EECCCCCEEEEeCCCCCcEEEEEChhhhhhhh
Confidence 4577776663 67899999887 345555543333 3445 7999999877654 589999999987553
Q ss_pred ---------eEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 287 ---------ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 287 ---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
..+.. . .......+|.++|....+-. |..|..|++.+
T Consensus 359 ~~~~~~~~vvaeve--v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 359 GKIKPRDAVVAEPE--L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccCCccceEEEeec--c-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 23333 2 22344578999998777777 99999999987
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.6e-07 Score=76.33 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=76.8
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeee
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 93 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 93 (341)
+.++|++++ ++.|+-|..+|.|++.+... .. .+...|+.. ..+|.++++|+.||+|.|-.+.+.+...++
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 456666664 67899999999999999643 33 444445544 568999999999999999999988887776
Q ss_pred cccCccEEEEEEcCC-----CcEEEEecCCCeEEEEE
Q psy17863 94 REHASKVTCVKFNED-----SSVVISGSQDNTVMMWD 125 (341)
Q Consensus 94 ~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd 125 (341)
. ...++.+++++|+ .+.+++|+.-| +.++.
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~e 144 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSE 144 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEeh
Confidence 6 4578999999996 56788888777 55543
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-08 Score=87.95 Aligned_cols=201 Identities=15% Similarity=0.193 Sum_probs=130.7
Q ss_pred cceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCC--eEE
Q psy17863 45 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN--TVM 122 (341)
Q Consensus 45 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~ 122 (341)
.+..++|..|....+|++|+-+.++|+.|+..|.|+++++.+|........|.++|+.+.=+.+|..+++.+.-. -..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 345567788999999999999999999999999999999999999999999999999999888888777665432 234
Q ss_pred EEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEc
Q psy17863 123 MWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTA 202 (341)
Q Consensus 123 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 202 (341)
+|++..-- .....+
T Consensus 1171 LW~~~s~~--------------------------------~~~Hsf---------------------------------- 1184 (1516)
T KOG1832|consen 1171 LWDASSTG--------------------------------GPRHSF---------------------------------- 1184 (1516)
T ss_pred Hhcccccc--------------------------------Cccccc----------------------------------
Confidence 56654310 000000
Q ss_pred ccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeee-cCcc---cceeEEEEEeCCCCCEEEEecCCCcEEE
Q psy17863 203 EEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY-KGHK---SGDFRIECCLDSKDSQIFCGSSDGKIYK 278 (341)
Q Consensus 203 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~i 278 (341)
..-.++.|+.....-+.|+......+||++++.++.++ .+.. -.-... .|+|+..+++ .|| .+
T Consensus 1185 ------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a--~FsP~D~LIl---ndG--vL 1251 (1516)
T KOG1832|consen 1185 ------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLA--HFSPCDTLIL---NDG--VL 1251 (1516)
T ss_pred ------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccc--ccCCCcceEe---eCc--ee
Confidence 11223344444333444555566888888888776663 2211 111222 6788877766 344 37
Q ss_pred EeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEcccccCCc
Q psy17863 279 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQA 331 (341)
Q Consensus 279 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~~~~~ 331 (341)
||++..+.++.+. .... --.-.|+|.|.-++.-+ .|||+.+-....
T Consensus 1252 WDvR~~~aIh~FD--~ft~-~~~G~FHP~g~eVIINS----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1252 WDVRIPEAIHRFD--QFTD-YGGGGFHPSGNEVIINS----EIWDMRTFKLLH 1297 (1516)
T ss_pred eeeccHHHHhhhh--hhee-cccccccCCCceEEeec----hhhhhHHHHHHh
Confidence 8888877777665 2221 12235788887776653 466666544333
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.68 E-value=8e-05 Score=58.52 Aligned_cols=185 Identities=12% Similarity=0.102 Sum_probs=110.0
Q ss_pred EEEEEEc-cCCCEEEEEeCCCeEEEEcCCCcceeeEecC-----cccceeEEEEecCCCEEEEecCC--------CcEEE
Q psy17863 16 IRAVRFN-VDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG-----HAHEVNDATAACDSSQIASGASD--------KSVIL 81 (341)
Q Consensus 16 v~~~~~~-~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i 81 (341)
...+++. +++. |+.+...+ +.++|+.+++....... .....+.+++.|+|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 6677777 6655 45445444 56669888754433332 34678899999999977775543 45777
Q ss_pred EECCCCceeeeecccCccEEEEEEcCCCcEEE-EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEcc
Q psy17863 82 WEVTTGQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLV 160 (341)
Q Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~ 160 (341)
++.. ++...... .-.....++|+|+++.|+ +-+..+.|..+++......... .-.+.++.
T Consensus 120 ~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~-----------------~~~~~~~~ 180 (246)
T PF08450_consen 120 IDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN-----------------RRVFIDFP 180 (246)
T ss_dssp EETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE-----------------EEEEEE-S
T ss_pred ECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceee-----------------eeeEEEcC
Confidence 7766 44433333 345568999999998765 5566677777777543210000 00000110
Q ss_pred CCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEecccc
Q psy17863 161 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240 (341)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 240 (341)
.. ....-.+++..+|++.++....+.|.+++.+ |
T Consensus 181 ~~---------------------------------------------~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G 214 (246)
T PF08450_consen 181 GG---------------------------------------------PGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G 214 (246)
T ss_dssp SS---------------------------------------------SCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S
T ss_pred CC---------------------------------------------CcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c
Confidence 00 1124456777888877877788999999987 8
Q ss_pred ceeeeecCcccceeEEEEEe-CCCCCEEEE
Q psy17863 241 ELLEEYKGHKSGDFRIECCL-DSKDSQIFC 269 (341)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 269 (341)
+.+..+......++.+ +| .++.+.|+.
T Consensus 215 ~~~~~i~~p~~~~t~~--~fgg~~~~~L~v 242 (246)
T PF08450_consen 215 KLLREIELPVPRPTNC--AFGGPDGKTLYV 242 (246)
T ss_dssp CEEEEEE-SSSSEEEE--EEESTTSSEEEE
T ss_pred cEEEEEcCCCCCEEEE--EEECCCCCEEEE
Confidence 8888877664455555 67 455555543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.7e-05 Score=62.32 Aligned_cols=285 Identities=12% Similarity=0.115 Sum_probs=135.6
Q ss_pred EEccCCCEEEEEeC-C--CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeeccc
Q psy17863 20 RFNVDGSYCLTCGS-D--KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREH 96 (341)
Q Consensus 20 ~~~~~~~~l~t~~~-d--g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 96 (341)
+|.+||+.|+-++. | ..+.+-|+.+++..+--.+.........++|+++.++-......|+-.|+++.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 56778977666554 4 45677788887755443332233335667788888776656678999999998876666666
Q ss_pred CccEEEEEEc--CCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecC
Q psy17863 97 ASKVTCVKFN--EDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK 174 (341)
Q Consensus 97 ~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 174 (341)
...+-...|. .++..++-.-. .+. ...+.. ....-..+..+-....|...|+.+++....+. ..
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~--------~~~-d~~~l~--~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~---~~ 187 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEI--------SRE-DWKPLT--KWKGFREFYEARPHCRIFTIDLKTGERKVVFE---DT 187 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEE--------EGG-G-------SHHHHHHHHHC---EEEEEEETTT--EEEEEE---ES
T ss_pred cccccccceeeCCCccEEEEEEE--------eeh-hccCcc--ccHHHHHHHhhCCCceEEEEECCCCceeEEEe---cC
Confidence 6666555554 34544432211 000 000000 00000011111223455666777665443333 33
Q ss_pred ceEEEEEECCCCceEEEeC-C---Cc--eEEEEccccc----------CCCCeEEEEEccCCCEEEEe-----ecCCeEE
Q psy17863 175 AVVNSLCSHPTRKHIMSAC-G---NN--VKLWTAEEDY----------GQEPIVDACFTRDCQCILTC-----STDECLR 233 (341)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~-~---~~--i~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~-----~~d~~i~ 233 (341)
..+..+.++|....+++-+ . .. -++|-+.... ....+..=-|.|||..+.-- ..+..|.
T Consensus 188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~ 267 (386)
T PF14583_consen 188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIA 267 (386)
T ss_dssp S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEE
T ss_pred ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEE
Confidence 4577888999876666654 2 22 3677665533 22334445688999876542 2344677
Q ss_pred EEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCC----------------cEEEEeeeCCCceEEEEeeeec-
Q psy17863 234 LFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG----------------KIYKWQLVDSSQISTLIHSVGK- 296 (341)
Q Consensus 234 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----------------~i~iwd~~~~~~~~~~~~~~~~- 296 (341)
-+|+.+++........ .+..+..++||++++-=+.|. -|++++++.++... +. .|.
T Consensus 268 ~~d~~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~--~h~~ 340 (386)
T PF14583_consen 268 GYDPDTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LA--RHDT 340 (386)
T ss_dssp EE-TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEE-EE--E---
T ss_pred eeCCCCCCceEEEeCC----ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee-ee--eccC
Confidence 7888877653322211 234446778888776433332 45667776554432 22 121
Q ss_pred --------c--ceEEEEEcCCCcEEEEeC--CCcEEEEEcc
Q psy17863 297 --------A--VVNSLCSHPTRKHIMSAC--GNNVKLWTAE 325 (341)
Q Consensus 297 --------~--~v~~~~~~~~~~~l~~~~--d~~i~vw~~~ 325 (341)
. .=....|+||+++++-.+ .|...||-++
T Consensus 341 sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 341 SWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp ----BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred cceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 0 124578999999887776 7877777554
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=2e-05 Score=71.42 Aligned_cols=221 Identities=12% Similarity=0.133 Sum_probs=127.1
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeee
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 92 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 92 (341)
.+.|.++.|..+++.++.+...|.|.+-|.++... .....-...|.+++|+||++.++..+..+++.+-.- +-.++..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAE 145 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhc
Confidence 35899999999999999999999999999877543 233335678999999999999999888887766542 1111111
Q ss_pred ecc-----cCccEEEEEEcCCCcEEEEecCCCeEEEEEecC---------CCCcCeEEeecCCCceEEE-----eeccCe
Q psy17863 93 WRE-----HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS---------RSHHPIQCCLDSKDSQIFC-----GSSDGK 153 (341)
Q Consensus 93 ~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~~~~~~-----~~~~g~ 153 (341)
.+- ..+..-.+-|-.....+ -|+ .|.....+... .....+......++.++++ ......
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred cccccccccccccceecccccceee-ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 100 01111122222111110 000 01111110000 0011222233333334443 222267
Q ss_pred EEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC----CCceEEEEcccccC----------CCCeEEEEEccC
Q psy17863 154 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC----GNNVKLWTAEEDYG----------QEPIVDACFTRD 219 (341)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~----------~~~i~~~~~~~~ 219 (341)
+++||.. +.. ... .......-.+++|-|.|..+++.. ++.|.+|......| ..++..++|+.+
T Consensus 224 irV~drE-g~L-ns~-se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 224 IRVYDRE-GAL-NST-SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred EEEeccc-chh-hcc-cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 7777755 111 111 111223356889999999888865 35688887765443 345899999999
Q ss_pred CCEEEE---eecCCeEEEEecccc
Q psy17863 220 CQCILT---CSTDECLRLFDKATG 240 (341)
Q Consensus 220 ~~~l~~---~~~d~~i~i~d~~~~ 240 (341)
+..|++ ......|++|-..+.
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred CCceeeeecccccceEEEEEecCe
Confidence 999987 555556999987654
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=5e-06 Score=71.82 Aligned_cols=118 Identities=18% Similarity=0.333 Sum_probs=89.5
Q ss_pred EEeeeCCcEEEEEEccC-------------CCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecC-----CCE
Q psy17863 8 TIDCKQGAIRAVRFNVD-------------GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD-----SSQ 69 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~-------------~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~ 69 (341)
-|..|.+.|.-..+.-+ |+++++|+.||+|.|-.+.+.+...++. ...++.+++++|+ .+.
T Consensus 53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~ 131 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQ 131 (846)
T ss_pred eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhh
Confidence 35567777766665444 9999999999999999998888777776 5678999999997 567
Q ss_pred EEEecCCCcEEEEECC--CCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC
Q psy17863 70 IASGASDKSVILWEVT--TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 130 (341)
Q Consensus 70 l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 130 (341)
+++|+.-| +.++.-. ..+....+....++|.++.|. |+++|-++.+| |++||+...+
T Consensus 132 fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~ 190 (846)
T KOG2066|consen 132 FVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQ 190 (846)
T ss_pred eeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccc
Confidence 99999888 7666521 111112355567899999996 77888887665 8999988754
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.6e-07 Score=78.14 Aligned_cols=143 Identities=13% Similarity=0.119 Sum_probs=100.9
Q ss_pred CCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC
Q psy17863 140 SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD 219 (341)
Q Consensus 140 ~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~ 219 (341)
.....++.|+....+..+|+++.+..+........ ...+-.+
T Consensus 145 ~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~--------------------------------------v~imR~N 186 (1118)
T KOG1275|consen 145 MGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG--------------------------------------VTIMRYN 186 (1118)
T ss_pred cCCcceeecchhhheeeeecccceeeeeeeccCCc--------------------------------------eEEEEec
Confidence 34556777777777888888876655444322111 1223346
Q ss_pred CCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecC---------CCcEEEEeeeCCCceEE-
Q psy17863 220 CQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS---------DGKIYKWQLVDSSQIST- 289 (341)
Q Consensus 220 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~- 289 (341)
++++.+|...|+|.+-|.++.+.++++..|++.+. .|+-.|+.|++++. |.-|+|||++.-+.+..
T Consensus 187 nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS----DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI 262 (1118)
T KOG1275|consen 187 NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS----DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI 262 (1118)
T ss_pred CcEEEeecccceEEeecCCcCceeeeeecccccee----eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCc
Confidence 67899999999999999999999999999998765 45667888888864 55688898864321110
Q ss_pred -------------------------------------------EEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEc
Q psy17863 290 -------------------------------------------LIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 290 -------------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~ 324 (341)
.........+..+.+|+++..||.+. +|.|.+|.-
T Consensus 263 ~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 263 QFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 00001223488999999999999999 999999983
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00021 Score=62.36 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=64.7
Q ss_pred CCEEEEEeCCCeEEEEcCCCcceeeEecCcc-cceeE----------EEEecCCCEEEEecCCCcEEEEECCCCceeeee
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA-HEVND----------ATAACDSSQIASGASDKSVILWEVTTGQPVRRW 93 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-~~v~~----------~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 93 (341)
+..++.++.++.|.-.|..+|+.+.++.... ..+.. +++ .+..++.++.|+.+...|.++|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777778899999999999888775321 11111 122 2346778888999999999999988765
Q ss_pred cccCcc-EEEEEEcC---CCcEEEEec------CCCeEEEEEecCCC
Q psy17863 94 REHASK-VTCVKFNE---DSSVVISGS------QDNTVMMWDVKSRS 130 (341)
Q Consensus 94 ~~~~~~-v~~~~~~~---~~~~l~~~~------~d~~i~iwd~~~~~ 130 (341)
...... -..+.-+| ++ .++.+. .+|.|..+|.++++
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGK 192 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCc
Confidence 421100 00111122 34 344443 26788888888876
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-06 Score=76.33 Aligned_cols=285 Identities=11% Similarity=0.070 Sum_probs=155.9
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeee--
Q psy17863 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW-- 93 (341)
Q Consensus 16 v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-- 93 (341)
+++++|+|..-.|+.|-.-|.+.+|...+.+.......|..+|..+.|+++|..++++..-|.+.+|....-..++..
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 567999999888999999999999998877766666789999999999999999999999999999998643322221
Q ss_pred ccc--CccE--EEEEEcCCCc------EEEEecCCCeEE-EEEecCCC-CcCeEEeecCCCceEEEeeccCeEEEEEccC
Q psy17863 94 REH--ASKV--TCVKFNEDSS------VVISGSQDNTVM-MWDVKSRS-HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVD 161 (341)
Q Consensus 94 ~~~--~~~v--~~~~~~~~~~------~l~~~~~d~~i~-iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~ 161 (341)
-.| ...+ .|...++++. ..+..+.+..+- .++.+... .......-.+.+..++.++.+|+|+..|-..
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g 221 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNG 221 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCC
Confidence 112 2223 3444455532 223334443333 44433211 1122233345566788889999998877432
Q ss_pred CcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccccCCCCeEEEEEcc-----CCCEEEEeecCCeEEEE
Q psy17863 162 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQEPIVDACFTR-----DCQCILTCSTDECLRLF 235 (341)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~i~i~ 235 (341)
+........ ....+-|.+....+++.. +-.+.++-............+..+. .|. ++++-..|.++
T Consensus 222 -~~~~V~k~d----S~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGg-iA~sEssGvLr-- 293 (1416)
T KOG3617|consen 222 -RQRTVHKLD----SEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGG-IACSESSGVLR-- 293 (1416)
T ss_pred -cEEEEEEcc----chHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCc-ccccccccccc--
Confidence 222211110 001122333222222211 1112222111111111111111111 111 33333333111
Q ss_pred eccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCC-------CceEEEE-eeeeccceEEEEEcCC
Q psy17863 236 DKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS-------SQISTLI-HSVGKAVVNSLCSHPT 307 (341)
Q Consensus 236 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~-~~~~~~~v~~~~~~~~ 307 (341)
..+..-+. ....+.++ ++...+..++.|...|.+.+|.-... .....+. .....+.|+.+.|.|-
T Consensus 294 ----~~eKyg~e-~ge~~~c~--cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~ 366 (1416)
T KOG3617|consen 294 ----KSEKYGLE-LGEGILCM--CYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPI 366 (1416)
T ss_pred ----CCcchhhh-cCCceEEE--EEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccc
Confidence 00101111 22345555 88888999999999999999963322 2223333 1133568999999997
Q ss_pred CcEEEEeC
Q psy17863 308 RKHIMSAC 315 (341)
Q Consensus 308 ~~~l~~~~ 315 (341)
...++.-+
T Consensus 367 k~~~avn~ 374 (1416)
T KOG3617|consen 367 KSTAAVNT 374 (1416)
T ss_pred cchhhhhh
Confidence 66666555
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00015 Score=57.73 Aligned_cols=247 Identities=10% Similarity=0.118 Sum_probs=135.1
Q ss_pred CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEec----------CCCeEEEEEecCCCCcCe-------EEeec
Q psy17863 77 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS----------QDNTVMMWDVKSRSHHPI-------QCCLD 139 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~~~~~~-------~~~~~ 139 (341)
+.+.++|.++++.+-.+.. +..-.+..+|+++.+++++ ..-.|.+||..+.....- .....
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999888777653 2334467899999888753 334689999887542110 01111
Q ss_pred CCCceEEEeec-----------cCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCC
Q psy17863 140 SKDSQIFCGSS-----------DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQ 208 (341)
Q Consensus 140 ~~~~~~~~~~~-----------~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 208 (341)
.....+..... ...|.+.|+...+.+..+... .+..+-..++..+...+.+|.+....+......
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P----GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP----GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT----SEEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC----CEEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 11122222223 334555555555555444322 122233333445666666777777766643322
Q ss_pred C-------------CeEEEEEccCCCEEEEeecCCeEEEEeccccce--eeeecCcc----------cceeEEEEEeCCC
Q psy17863 209 E-------------PIVDACFTRDCQCILTCSTDECLRLFDKATGEL--LEEYKGHK----------SGDFRIECCLDSK 263 (341)
Q Consensus 209 ~-------------~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~----------~~~~~~~~~~~~~ 263 (341)
. .+..-++...+..++-.+.+|.|+-.|+..... ...+.--. +.-..+ ++++.
T Consensus 171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~--A~~~~ 248 (342)
T PF06433_consen 171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLI--AYHAA 248 (342)
T ss_dssp EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-E--EEETT
T ss_pred eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeee--eeccc
Confidence 1 112233333444455567788888888764432 11221100 111122 56665
Q ss_pred CCEEEEec---C-----C--CcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCc-EEEEe-C-CCcEEEEEcccccCC
Q psy17863 264 DSQIFCGS---S-----D--GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK-HIMSA-C-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 264 ~~~l~~~~---~-----d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~-~-d~~i~vw~~~~~~~~ 330 (341)
.+.|+..- . | ..|.++|+.+++.+.++.. ..++.++..+.+.+ +|.+. . ++.+.+||..++...
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 55554421 1 1 2477888899999999873 35688999998876 55444 4 789999999988766
Q ss_pred ccce
Q psy17863 331 AGLS 334 (341)
Q Consensus 331 ~~~~ 334 (341)
+.+.
T Consensus 326 ~~~~ 329 (342)
T PF06433_consen 326 RSIE 329 (342)
T ss_dssp EEE-
T ss_pred eehh
Confidence 5543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.7e-05 Score=64.07 Aligned_cols=221 Identities=13% Similarity=0.167 Sum_probs=127.4
Q ss_pred CEEEEEeCCCeEEEEcCCCcceeeEecCcccc-----ee-EEEEecCCCEEEEec---------CCCcEEEEECCCCcee
Q psy17863 26 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE-----VN-DATAACDSSQIASGA---------SDKSVILWEVTTGQPV 90 (341)
Q Consensus 26 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~-----v~-~~~~~~~~~~l~~~~---------~dg~i~iw~~~~~~~~ 90 (341)
..++.++.+|.|.-+|.++|+.+.++...... +. ...+. +..++.++ .+|.+..+|.++|+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 57777888999999999999998887643321 11 12222 24555554 3678999999999988
Q ss_pred eeecccCc--------------------cE-EEEEEcCCCcEEEEecCCC------------------eEEEEEecCCCC
Q psy17863 91 RRWREHAS--------------------KV-TCVKFNEDSSVVISGSQDN------------------TVMMWDVKSRSH 131 (341)
Q Consensus 91 ~~~~~~~~--------------------~v-~~~~~~~~~~~l~~~~~d~------------------~i~iwd~~~~~~ 131 (341)
..++.... .+ ...++.+.+..++.++.++ .+.-+|.++++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 77653211 01 1234444556777776554 677778777652
Q ss_pred cCeEE----------------eec---CCC---ceEEEeeccCeEEEEEccCCcceeeeEeeecC-----ceEEEEE---
Q psy17863 132 HPIQC----------------CLD---SKD---SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK-----AVVNSLC--- 181 (341)
Q Consensus 132 ~~~~~----------------~~~---~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~--- 181 (341)
.-... +.. ..+ ..+++++.+|.+..+|.++++.+......... ..+..-.
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~~~vyv~~~~~ 348 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDPGLVYLGAFHI 348 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccccccCCceEEEccccc
Confidence 11100 000 111 25778889999999999999988765432110 0011000
Q ss_pred -------------ECCCCceEEEeCCCceEEEEcccccCC------CCeEEEEEccCCCEEEEeecCCeEEEEeccccce
Q psy17863 182 -------------SHPTRKHIMSACGNNVKLWTAEEDYGQ------EPIVDACFTRDCQCILTCSTDECLRLFDKATGEL 242 (341)
Q Consensus 182 -------------~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 242 (341)
-.+++.+.+.-....-.+|........ .+...-.....+..+++++.||.++.+|.++|+.
T Consensus 349 ~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~ 428 (488)
T cd00216 349 PLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKE 428 (488)
T ss_pred cccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCce
Confidence 001222222222222345554433111 1111111122556788889999999999999999
Q ss_pred eeeecC
Q psy17863 243 LEEYKG 248 (341)
Q Consensus 243 ~~~~~~ 248 (341)
+.+++.
T Consensus 429 lW~~~~ 434 (488)
T cd00216 429 LWKFRT 434 (488)
T ss_pred eeEEEC
Confidence 888764
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.7e-05 Score=61.92 Aligned_cols=83 Identities=12% Similarity=0.202 Sum_probs=59.7
Q ss_pred CCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCC----------------CE-EEEec
Q psy17863 209 EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKD----------------SQ-IFCGS 271 (341)
Q Consensus 209 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~-l~~~~ 271 (341)
..+.+++.+|++++.++...=|.|.++|+.++..++.++|....-..--....... .+ ++-+-
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 45788999999999999888899999999999888888876543211111111111 12 33456
Q ss_pred CCCcEEEEeeeCCCceEEEE
Q psy17863 272 SDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 272 ~dg~i~iwd~~~~~~~~~~~ 291 (341)
.-|.|.||.+++|..+..+.
T Consensus 388 rRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 388 RRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred cCCeEEEEecCCCCEEEEEE
Confidence 78899999999998888776
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.4e-05 Score=62.46 Aligned_cols=207 Identities=10% Similarity=0.142 Sum_probs=112.4
Q ss_pred cccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEE-EecCCC--
Q psy17863 54 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW-DVKSRS-- 130 (341)
Q Consensus 54 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw-d~~~~~-- 130 (341)
.......+.++|+++.+++ +.||...++.....+... .+.-...+|.+.++ +|+-...+.|.++ +++...
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccce
Confidence 4445788999999999888 556888888843333222 23345678888554 6666668899996 443322
Q ss_pred --CcC--eEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccc-
Q psy17863 131 --HHP--IQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED- 205 (341)
Q Consensus 131 --~~~--~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 205 (341)
..+ ...++. +.++....++.|.+||..+.+.+..+.. ..+..+.|++++.+++..+...+.+++....
T Consensus 104 ~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v----~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~ 176 (443)
T PF04053_consen 104 SIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDV----SAVKYVIWSDDGELVALVTKDSIYILKYNLEA 176 (443)
T ss_dssp ----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHH
T ss_pred EEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEec----CCCcEEEEECCCCEEEEEeCCeEEEEEecchh
Confidence 111 122222 4444445566899999999988888753 2478999999999999999999999887665
Q ss_pred -----------c-----C-CCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEE
Q psy17863 206 -----------Y-----G-QEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIF 268 (341)
Q Consensus 206 -----------~-----~-~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (341)
. . ...|.+.+|..+ .++-.+.. .++. +-.|+. ..+..-..+++.+ .+.++.+.++
T Consensus 177 ~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~yll--gy~~~~~~ly 248 (443)
T PF04053_consen 177 VAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGET-GIIAHLDKPLYLL--GYLPKENRLY 248 (443)
T ss_dssp HHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEE-EEEEE-SS--EEE--EEETTTTEEE
T ss_pred cccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc-ceEEEcCCceEEE--EEEccCCEEE
Confidence 1 1 456777778776 33333333 5655 233322 2222223445555 4556566777
Q ss_pred EecCCCcEEEEeee
Q psy17863 269 CGSSDGKIYKWQLV 282 (341)
Q Consensus 269 ~~~~dg~i~iwd~~ 282 (341)
....|+.+..+.+.
T Consensus 249 ~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 249 LIDRDGNVISYELD 262 (443)
T ss_dssp EE-TT--EEEEE--
T ss_pred EEECCCCEEEEEEC
Confidence 77788887777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.3e-06 Score=71.52 Aligned_cols=74 Identities=8% Similarity=0.041 Sum_probs=63.2
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCC
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 87 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 87 (341)
....|.|++++|+.+.|+.|+.||+|.+||...+. ..+....-..+.++|+|+|..+++|+..|.+.+||+.-+
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 66789999999999999999999999999976553 233335566889999999999999999999999998643
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00029 Score=59.46 Aligned_cols=201 Identities=13% Similarity=0.138 Sum_probs=103.3
Q ss_pred EEEEccCCCEEEEEeCC----------C-eEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC
Q psy17863 18 AVRFNVDGSYCLTCGSD----------K-KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 18 ~~~~~~~~~~l~t~~~d----------g-~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 86 (341)
.++.+|.|..+|....+ . .|.||+. .|+++.++.-..+.+.++.|+.+. .|++-..||.++++|+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~- 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF- 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-
Confidence 34566766666665433 1 5999995 677777766555899999998755 55566789999999986
Q ss_pred Cceeeee-------cccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCc-CeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 87 GQPVRRW-------REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH-PIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 87 ~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
|+....+ .-....+....+..+|-.++ ..++.+.+. +..... ........+...
T Consensus 110 G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v--~n~~~~~~~~~~~~~p~~~-------------- 171 (410)
T PF04841_consen 110 GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVV--NNIDEPVKLRRLPEIPGLW-------------- 171 (410)
T ss_pred CceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEE--eCccccchhhccccCCCcc--------------
Confidence 3331111 11112222223333453333 334444333 221110 000000000000
Q ss_pred ccCCcceeeeEeeecCceEEEEEECCCCc-eEEEeCCCceEEEEcccc---cCCCCeEEEEEccCCCEEEEeecCCeEEE
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHPTRK-HIMSACGNNVKLWTAEED---YGQEPIVDACFTRDCQCILTCSTDECLRL 234 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 234 (341)
...........+ ..++.+.. .+....++.+.+.+...- ...+++..+++||+|++++.-..+|.+.+
T Consensus 172 -------~~~~~~~~~~~i--~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~~~~~i~~iavSpng~~iAl~t~~g~l~v 242 (410)
T PF04841_consen 172 -------TKFHWWPSWTVI--PLLSSDRVVEILLANGETIYIIDENSFKQIDSDGPIIKIAVSPNGKFIALFTDSGNLWV 242 (410)
T ss_pred -------cccccccccccc--eEeecCcceEEEEecCCEEEEEEccccccccCCCCeEEEEECCCCCEEEEEECCCCEEE
Confidence 000000000001 11222222 222233344443332221 13468999999999999999999999999
Q ss_pred EeccccceeeeecC
Q psy17863 235 FDKATGELLEEYKG 248 (341)
Q Consensus 235 ~d~~~~~~~~~~~~ 248 (341)
.+..-.+.+.++..
T Consensus 243 ~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 243 VSSDFSEKLCEFDT 256 (410)
T ss_pred EECcccceeEEeec
Confidence 88765555555543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00055 Score=61.28 Aligned_cols=311 Identities=14% Similarity=0.126 Sum_probs=166.1
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEe-cCcccceeEEEEecC--C----CEEEEecCCCcEEEEEC-CC
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTY-GGHAHEVNDATAACD--S----SQIASGASDKSVILWEV-TT 86 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~--~----~~l~~~~~dg~i~iw~~-~~ 86 (341)
.++..+.+.+...++.++.++.+...++..+...... ......|.|+.++|- + +.+++|..+..+.+.-. .+
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd 568 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD 568 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC
Confidence 3444444444456666666666666666555422221 234568999999973 2 26888877666554433 33
Q ss_pred Cceeeee----cccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC-------------CcCeEEeecCCCceEEEee
Q psy17863 87 GQPVRRW----REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-------------HHPIQCCLDSKDSQIFCGS 149 (341)
Q Consensus 87 ~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~ 149 (341)
...+... +.-+..|.-..+-.|..+|.++..||.+..+.+.... ..+....+......-+.+.
T Consensus 569 ~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~ 648 (1096)
T KOG1897|consen 569 LILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFAL 648 (1096)
T ss_pred cceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEe
Confidence 3322221 1123445555666678899999999999877654322 1111122222233333333
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc--------CCCCeEEEEEccCCC
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY--------GQEPIVDACFTRDCQ 221 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~i~~~~~~~~~~ 221 (341)
.|.-..+|..+..-....+... ....+..+.-..-...++.+.++.+.+..++.-. .......+++.+...
T Consensus 649 sdrP~viY~~n~kLv~spls~k-ev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl 727 (1096)
T KOG1897|consen 649 SDRPTVIYSSNGKLVYSPLSLK-EVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSL 727 (1096)
T ss_pred CCCCEEEEecCCcEEEeccchH-HhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccce
Confidence 3444444443322111111110 0011112222223456777777777777665432 344556677777444
Q ss_pred EEEEeec-----------C---CeEEEEeccccceeeee--cCcccceeEEEEEeCCC-CCEEEEec----------CCC
Q psy17863 222 CILTCST-----------D---ECLRLFDKATGELLEEY--KGHKSGDFRIECCLDSK-DSQIFCGS----------SDG 274 (341)
Q Consensus 222 ~l~~~~~-----------d---~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~l~~~~----------~dg 274 (341)
.+.+.+. . ..++++|-++.+.+... .........+.+.|..| +.+++.|. ..|
T Consensus 728 ~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~G 807 (1096)
T KOG1897|consen 728 TFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNG 807 (1096)
T ss_pred EEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccc
Confidence 4444332 1 24777777766654432 22222233334456666 66777775 258
Q ss_pred cEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEccccc
Q psy17863 275 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 328 (341)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~~ 328 (341)
.|.++.+.+.+.+.......-.+.+.++.- -+|++||.- ...|++|++.++.
T Consensus 808 RIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~I-n~~vrLye~t~~~ 859 (1096)
T KOG1897|consen 808 RIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGI-NQSVRLYEWTTER 859 (1096)
T ss_pred eEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEec-CcEEEEEEccccc
Confidence 899999988655555543234556666653 246666655 6789999998873
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.9e-06 Score=68.22 Aligned_cols=141 Identities=10% Similarity=0.114 Sum_probs=86.7
Q ss_pred ceEEEEEECCCCceEEEeCCCceEEEEccc--ccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccc
Q psy17863 175 AVVNSLCSHPTRKHIMSACGNNVKLWTAEE--DYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSG 252 (341)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 252 (341)
..+..+..+|+++++++.+++...++.... ....+.-..++|.++++ +++-...+.|.++.--+.+....++... .
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~~-~ 110 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLPF-S 110 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----SS--
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcCCc-c
Confidence 447899999999999999999999998442 22445666788999665 5666668889997433333333443221 2
Q ss_pred eeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEcccc
Q psy17863 253 DFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED 327 (341)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~ 327 (341)
+..+ |. |.+|...+.+ .|.+||+.+++.+..+. -.+|..+.|++++.+++..++..+.|++.+.+
T Consensus 111 ~~~I---f~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~----v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~ 175 (443)
T PF04053_consen 111 VEKI---FG--GNLLGVKSSD-FICFYDWETGKLIRRID----VSAVKYVIWSDDGELVALVTKDSIYILKYNLE 175 (443)
T ss_dssp EEEE---E---SSSEEEEETT-EEEEE-TTT--EEEEES----S-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HH
T ss_pred cceE---Ec--CcEEEEECCC-CEEEEEhhHcceeeEEe----cCCCcEEEEECCCCEEEEEeCCeEEEEEecch
Confidence 2223 22 7777766554 89999999999999887 22489999999999999999778888876654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.6e-05 Score=65.13 Aligned_cols=208 Identities=10% Similarity=-0.002 Sum_probs=111.2
Q ss_pred EecCCCEEEEe-cCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCC----CeEEEEEecCCCCcCeEEe
Q psy17863 63 AACDSSQIASG-ASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD----NTVMMWDVKSRSHHPIQCC 137 (341)
Q Consensus 63 ~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~ 137 (341)
+.|||+.+... -..+.+.+.|.++.+...++.-.. ....++++++++++++.+.+ .++...+..... ....+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d--~~vvf 276 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD--WVVVF 276 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCc--eEEEE
Confidence 34566554332 234667788888777766655322 44667899999999888632 223222222111 11111
Q ss_pred -------ecCCCceEEEeeccCeEEEEEccC-----CcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccc
Q psy17863 138 -------LDSKDSQIFCGSSDGKIYKWQLVD-----SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED 205 (341)
Q Consensus 138 -------~~~~~~~~~~~~~~g~i~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 205 (341)
....+..... .++.|.+.|.++ .+....+..
T Consensus 277 ni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV----------------------------------- 319 (635)
T PRK02888 277 NIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV----------------------------------- 319 (635)
T ss_pred chHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC-----------------------------------
Confidence 0111222222 256677777776 222222211
Q ss_pred cCCCCeEEEEEccCCCEEEEe-ecCCeEEEEeccccce------------eeeecCcccceeEEEEEeCCCCCEEEEecC
Q psy17863 206 YGQEPIVDACFTRDCQCILTC-STDECLRLFDKATGEL------------LEEYKGHKSGDFRIECCLDSKDSQIFCGSS 272 (341)
Q Consensus 206 ~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (341)
......+.++|||++++++ ..+.++.++|+.+.+. ..+.+--.++ +..+|+++|+...+-.-
T Consensus 320 --GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP---LHTaFDg~G~aytslf~ 394 (635)
T PRK02888 320 --PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP---LHTAFDGRGNAYTTLFL 394 (635)
T ss_pred --CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc---ceEEECCCCCEEEeEee
Confidence 2233445566666655543 3467777777765442 3333322222 23378999988888889
Q ss_pred CCcEEEEeeeC----------CCceEEEE---eeeeccceEEEEEcCCCcEEEEeC
Q psy17863 273 DGKIYKWQLVD----------SSQISTLI---HSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 273 dg~i~iwd~~~----------~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
|..|..|++.+ ...+.++. ..+|......=.-.|||++|++..
T Consensus 395 dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 395 DSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred cceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 99999999876 23334443 112222211222367888888765
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00021 Score=55.28 Aligned_cols=201 Identities=12% Similarity=0.187 Sum_probs=105.9
Q ss_pred EecCcccceeEEEEecCCC-EEEEecCCCcEEEEECCCCceeeeeccc-CccEEEEEEcCCCcEEEEecCCCeEEEEEec
Q psy17863 50 TYGGHAHEVNDATAACDSS-QIASGASDKSVILWEVTTGQPVRRWREH-ASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 127 (341)
Q Consensus 50 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 127 (341)
.+.+-...+..++|.|+.+ ++++....+.|..++. +|+.++.+.-. .+..-.+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4555666799999999755 5566677888888886 57888777543 3567889998888888877778999888885
Q ss_pred CCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccc--
Q psy17863 128 SRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEE-- 204 (341)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~-- 204 (341)
......-.. .+.-+.+. ....+...+-.++++|.++.++++.+ .-..+|.+..
T Consensus 95 ~~~~~~~~~----------------~~~~~~l~--------~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~ 150 (248)
T PF06977_consen 95 DDTTSLDRA----------------DVQKISLG--------FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP 150 (248)
T ss_dssp ---TT--EE----------------EEEEEE-----------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT
T ss_pred ccccccchh----------------hceEEecc--------cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc
Confidence 432100000 00001100 00113344678888887665555543 3344554443
Q ss_pred c----------------cCCCCeEEEEEccC-CCEEEEeecCCeEEEEeccccceeeeecCcc---------cceeEEEE
Q psy17863 205 D----------------YGQEPIVDACFTRD-CQCILTCSTDECLRLFDKATGELLEEYKGHK---------SGDFRIEC 258 (341)
Q Consensus 205 ~----------------~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~~~~~~~ 258 (341)
. ..-..+..++++|. +.+++....+..|..+| .+|+.+..+.-.. .....+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGI-- 227 (248)
T PF06977_consen 151 GGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGI-- 227 (248)
T ss_dssp -SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEE--
T ss_pred CccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEE--
Confidence 1 13345788899986 56777777888899999 5577655443211 123344
Q ss_pred EeCCCCCEEEEecCCCcEEEE
Q psy17863 259 CLDSKDSQIFCGSSDGKIYKW 279 (341)
Q Consensus 259 ~~~~~~~~l~~~~~dg~i~iw 279 (341)
+++++|++.++. +-+..+++
T Consensus 228 a~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 228 AFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EE-TT--EEEEE-TTTEEEEE
T ss_pred EECCCCCEEEEc-CCceEEEe
Confidence 788888554444 55555544
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00096 Score=58.30 Aligned_cols=257 Identities=11% Similarity=0.111 Sum_probs=135.9
Q ss_pred CEEEEEeCCCeEEEEcCCCcceeeEecCc--c--cceeEEEEecCCCEEEEec------CCCcEEEEECCCCceeeeecc
Q psy17863 26 SYCLTCGSDKKIKLWNPYRNLLLKTYGGH--A--HEVNDATAACDSSQIASGA------SDKSVILWEVTTGQPVRRWRE 95 (341)
Q Consensus 26 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~--~--~~v~~~~~~~~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~ 95 (341)
..++.++.|+.+.-.|..+|+.+...... . ..+++--.-.++ .++++. .+|.|..+|.++|+.+..+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 45677788999999999999988776521 1 112111111144 455543 268899999999988766532
Q ss_pred cC-------------------------------ccEE-EEEEcCCCcEEEEecCC-----C-----------eEEEEEec
Q psy17863 96 HA-------------------------------SKVT-CVKFNEDSSVVISGSQD-----N-----------TVMMWDVK 127 (341)
Q Consensus 96 ~~-------------------------------~~v~-~~~~~~~~~~l~~~~~d-----~-----------~i~iwd~~ 127 (341)
-. ..++ .+++.|+..+++.+..+ + .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 11 0111 23566656666655422 1 45555666
Q ss_pred CCCC------------------cCeEEeecCCC---ceEEEeeccCeEEEEEccCCcceeeeEeee--------c---Cc
Q psy17863 128 SRSH------------------HPIQCCLDSKD---SQIFCGSSDGKIYKWQLVDSSQISTLIHSV--------G---KA 175 (341)
Q Consensus 128 ~~~~------------------~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~--------~---~~ 175 (341)
+++. .++..-...++ ..++.+..+|.+++.|.++++.+....... . ..
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~ 359 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGR 359 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCC
Confidence 6541 11111111222 267789999999999999988752211000 0 00
Q ss_pred e----------------------------EEEEEECCCCceEEEeCCCceEEEEccccc-CC-CCeEEEEE--ccCCCEE
Q psy17863 176 V----------------------------VNSLCSHPTRKHIMSACGNNVKLWTAEEDY-GQ-EPIVDACF--TRDCQCI 223 (341)
Q Consensus 176 ~----------------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~-~~i~~~~~--~~~~~~l 223 (341)
+ -..++++|+..++.....+.-..+...... .. .......+ .|.
T Consensus 360 p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~---- 435 (527)
T TIGR03075 360 PIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPP---- 435 (527)
T ss_pred CccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCC----
Confidence 0 011344444444444332211111000000 00 00000000 000
Q ss_pred EEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 224 LTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 224 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
....-|.|.-+|+.+++.+-..+......... +...+.+++.++.+|.++.+|.++|+.+...+
T Consensus 436 -~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~---l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 436 -PDDHMGSLIAWDPITGKIVWEHKEDFPLWGGV---LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred -CCCCceeEEEEeCCCCceeeEecCCCCCCCcc---eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 00123678889999998877665322111111 11245577888889999999999999999887
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00065 Score=55.75 Aligned_cols=169 Identities=14% Similarity=0.230 Sum_probs=96.2
Q ss_pred CeEEEEEccCC----cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc-------CCCCeEEEEEccCC
Q psy17863 152 GKIYKWQLVDS----SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY-------GQEPIVDACFTRDC 220 (341)
Q Consensus 152 g~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~i~~~~~~~~~ 220 (341)
|.+.++++.+. ..+.........++|.+++.- +..++++.++.+.+|++.... ...++...+....+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~ 139 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK 139 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccc
Confidence 66777777663 233444344456778888777 334888888999999998766 11222333333346
Q ss_pred CEEEEeecCCeEEEEeccc-cceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC-------CC-ceEEEE
Q psy17863 221 QCILTCSTDECLRLFDKAT-GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD-------SS-QISTLI 291 (341)
Q Consensus 221 ~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~-~~~~~~ 291 (341)
+++++|.....+.++..+. ...+..+.....+....++.+-++++.++.+..+|.+.++.... +. .+....
T Consensus 140 ~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~ 219 (321)
T PF03178_consen 140 NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERIS 219 (321)
T ss_dssp TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEE
T ss_pred cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEE
Confidence 6899999888888875443 22233333223333444445654556999999999999998763 22 333333
Q ss_pred eeeeccceEEE---EEcCC--C------cEEEEeC-CCcEEEE
Q psy17863 292 HSVGKAVVNSL---CSHPT--R------KHIMSAC-GNNVKLW 322 (341)
Q Consensus 292 ~~~~~~~v~~~---~~~~~--~------~~l~~~~-d~~i~vw 322 (341)
.......|+++ .+.|. + ..++.++ +|.|...
T Consensus 220 ~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 220 SFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 22345677777 54552 2 2355666 9988843
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00085 Score=56.76 Aligned_cols=76 Identities=11% Similarity=0.097 Sum_probs=60.3
Q ss_pred cccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 204 EDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 204 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
.-..+..+.+++++|+...++.|+.||.|.+||...+..... ... .....++|+|+|..+++|+..|.+.+||+.-
T Consensus 255 sipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~--~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 255 SIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAE--FIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eec--ccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 334678899999999999999999999999999876533222 122 2233348999999999999999999999853
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00099 Score=55.41 Aligned_cols=65 Identities=14% Similarity=0.082 Sum_probs=42.8
Q ss_pred EeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEe-cC-------c---------ccceeEEEEecCCCEEE
Q psy17863 9 IDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTY-GG-------H---------AHEVNDATAACDSSQIA 71 (341)
Q Consensus 9 l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~-~~-------~---------~~~v~~~~~~~~~~~l~ 71 (341)
+......+....|||+|+.+|... ++.|.+++..+++..+.- .+ - -+.-..+.|+||+++|+
T Consensus 38 l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la 116 (353)
T PF00930_consen 38 LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLA 116 (353)
T ss_dssp SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEE
T ss_pred CcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEE
Confidence 333356788999999999999876 688999998776433221 11 0 11235688999999988
Q ss_pred Eec
Q psy17863 72 SGA 74 (341)
Q Consensus 72 ~~~ 74 (341)
...
T Consensus 117 ~~~ 119 (353)
T PF00930_consen 117 FLR 119 (353)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00062 Score=52.72 Aligned_cols=121 Identities=7% Similarity=0.135 Sum_probs=77.2
Q ss_pred eEEeeeCCcEEEEEEccCCC-EEEEEeCCCeEEEEcCCCcceeeEecCc-ccceeEEEEecCCCEEEEecCCCcEEEEEC
Q psy17863 7 QTIDCKQGAIRAVRFNVDGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGH-AHEVNDATAACDSSQIASGASDKSVILWEV 84 (341)
Q Consensus 7 ~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 84 (341)
+.+.+-...+..++|+|+.+ ++++....+.|...+. +|+.++++.-. .+....+++..++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 34556667799999999755 5666667888888886 57888776533 356788888878877777666899999988
Q ss_pred CCCc------eeeee-----cccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC
Q psy17863 85 TTGQ------PVRRW-----REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 128 (341)
Q Consensus 85 ~~~~------~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 128 (341)
.... ....+ ..++..+-.++|.+.++.|+.+-......++.++.
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 4321 11112 13456789999999888888887777777777765
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.9e-06 Score=71.34 Aligned_cols=93 Identities=14% Similarity=0.094 Sum_probs=80.1
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCccccee-EEEEecCCCEEEEecCCCcEEEEECCCCceeee
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVN-DATAACDSSQIASGASDKSVILWEVTTGQPVRR 92 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 92 (341)
..|.-+.|+|.-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.|++|-.||+|++.|++++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 467889999999999999999999999987 788888887888888 999999999999999999999999999987766
Q ss_pred ec-ccCccEEEEEEcC
Q psy17863 93 WR-EHASKVTCVKFNE 107 (341)
Q Consensus 93 ~~-~~~~~v~~~~~~~ 107 (341)
.. ....+|.++-|.+
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 32 2456677777763
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.5e-06 Score=44.99 Aligned_cols=39 Identities=31% Similarity=0.621 Sum_probs=36.1
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEc
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWN 41 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~ 41 (341)
.++...+..|...|.++.|+++++++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 467888999999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.4e-06 Score=70.18 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=88.6
Q ss_pred CCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCce
Q psy17863 208 QEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 287 (341)
Q Consensus 208 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (341)
...+.--+++..+++++.|+.-|.+++|+-..++....-.+-...+. ..++.+++..++|+|+..|.|.++.+....+.
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~-~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGIT-CVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceE-EEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 34455556777889999999999999999877665433221222232 33478999999999999999999998775433
Q ss_pred EEEE----eeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 288 STLI----HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 288 ~~~~----~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
.... ...|...|++++|+++++.+.+|. .|.|..-.++.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 2221 224678999999999999999999 99999888877
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0003 Score=63.05 Aligned_cols=135 Identities=16% Similarity=0.260 Sum_probs=97.2
Q ss_pred CCEEEEe-cCCCcEEEEECCCCceeeeecccCcc-EEEEEEcC-----CCcEEEEecCCCeEEEEEecCCC---------
Q psy17863 67 SSQIASG-ASDKSVILWEVTTGQPVRRWREHASK-VTCVKFNE-----DSSVVISGSQDNTVMMWDVKSRS--------- 130 (341)
Q Consensus 67 ~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~--------- 130 (341)
.++|+.- .....|+-.|++.|+.+..++.+... |..++=.. +...-+.|-.++.+..||++-..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 34578999999999999999887654 55554321 13345666678889999987643
Q ss_pred ----CcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcc
Q psy17863 131 ----HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 203 (341)
Q Consensus 131 ----~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 203 (341)
.....++....++++++|+.+|.|++||-. ++...+... .-..+|..+..+.+|+++++++...+.+++..
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALP-GLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred ccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcCC-CCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 134456677788899999999999999943 333222222 23468999999999999999999999888863
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.8e-07 Score=75.96 Aligned_cols=116 Identities=16% Similarity=0.239 Sum_probs=80.5
Q ss_pred CCcEEEEEEccC--CCEEEEEeCCCeEEEEcCCCcce--eeEecCcccceeEEEEec-CCCEEEEec----CCCcEEEEE
Q psy17863 13 QGAIRAVRFNVD--GSYCLTCGSDKKIKLWNPYRNLL--LKTYGGHAHEVNDATAAC-DSSQIASGA----SDKSVILWE 83 (341)
Q Consensus 13 ~~~v~~~~~~~~--~~~l~t~~~dg~i~iw~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~dg~i~iw~ 83 (341)
...+.|++++-+ ...++.|..+|.|-+-......- .....++....++++|++ |.+.||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 345777877654 35788999999999987665432 233467888999999998 556677763 356799999
Q ss_pred CCCC--ceee--eecc-cCccEEEEEEcCCCcEEEEecCCCeEEEEEecC
Q psy17863 84 VTTG--QPVR--RWRE-HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 128 (341)
Q Consensus 84 ~~~~--~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 128 (341)
+.++ .+.. .+.. -.....+++|..+.+++.+|.....++++|++.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq 185 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ 185 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhh
Confidence 9876 2221 2222 233455777877888888888777888888774
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00022 Score=46.72 Aligned_cols=100 Identities=17% Similarity=0.280 Sum_probs=69.3
Q ss_pred EEEEEEcc---CC-CEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceee
Q psy17863 16 IRAVRFNV---DG-SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVR 91 (341)
Q Consensus 16 v~~~~~~~---~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 91 (341)
|++|++.. || +.|++|+.|..|++|+ ..+.+.++. ..+.|+++.-... ..++.+..+|+|-+|+- .+.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 67777755 32 5899999999999998 346677776 4566777776655 67899999999999974 34444
Q ss_pred eecccCccEEEEEEcC-CC---cEEEEecCCCeEE
Q psy17863 92 RWREHASKVTCVKFNE-DS---SVVISGSQDNTVM 122 (341)
Q Consensus 92 ~~~~~~~~v~~~~~~~-~~---~~l~~~~~d~~i~ 122 (341)
..+.. ..+.++.+.. ++ ..|++|-.+|.|-
T Consensus 76 RiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 44433 3356665543 32 3677887777764
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0021 Score=53.96 Aligned_cols=206 Identities=14% Similarity=0.111 Sum_probs=131.3
Q ss_pred EEEEEccCCC-EEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC---CCcEEEEECCCCceeee
Q psy17863 17 RAVRFNVDGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS---DKSVILWEVTTGQPVRR 92 (341)
Q Consensus 17 ~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~ 92 (341)
..++.++.++ ..++...++.|.+.|..+.+......-.. .-..++++|+++.+.++.. ++++.+.|-.+++.+..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 4677888877 44455556899999987777666654222 6678999999988777655 68899999988888877
Q ss_pred ecccCccEEEEEEcCCCcEEEEec-CCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEee
Q psy17863 93 WREHASKVTCVKFNEDSSVVISGS-QDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS 171 (341)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 171 (341)
...-..+ ..+++.|+++.++... .++.|.+.|...... +. ..... ...
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v-------------------------~~-~~~~~--~~~-- 204 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV-------------------------VR-GSVGS--LVG-- 204 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce-------------------------ec-ccccc--ccc--
Confidence 5543344 8899999999666655 567777777543320 00 00000 000
Q ss_pred ecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecC---CeEEEEeccccceeee-ec
Q psy17863 172 VGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTD---ECLRLFDKATGELLEE-YK 247 (341)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~-~~ 247 (341)
....-..+.++|+|.++.+.... +.+...|..++..... ..
T Consensus 205 -----------------------------------~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 205 -----------------------------------VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred -----------------------------------cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 01112334556666654443333 5888888887766554 22
Q ss_pred CcccceeEEEEEeCCCCCEEEEec-CCCcEEEEeeeCCCceEEEE
Q psy17863 248 GHKSGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 291 (341)
........+ ...|+|+.+.... ..+.+.+.|..+........
T Consensus 250 ~~~~~~~~v--~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 250 VGSGAPRGV--AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred cccCCCCce--eECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 222112223 7889999988874 44889999988777666554
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0023 Score=53.57 Aligned_cols=236 Identities=14% Similarity=0.134 Sum_probs=110.7
Q ss_pred ceeEEEEecCCCEEEEecCCCcEEEEECCCCceee-ee-c-------------ccCccEEEEEEcCCCcEEEEecCCCe-
Q psy17863 57 EVNDATAACDSSQIASGASDKSVILWEVTTGQPVR-RW-R-------------EHASKVTCVKFNEDSSVVISGSQDNT- 120 (341)
Q Consensus 57 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~-~-------------~~~~~v~~~~~~~~~~~l~~~~~d~~- 120 (341)
.|+.+.|.++...|+++...|.|.+|.....+... .- . ...+.+..+.--.+.. -.+|-
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~-----~~~gf~ 77 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPS-----LKEGFL 77 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT------SEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcc-----cccccC
Confidence 58899999999999999999999999886543322 00 0 0011222211000000 01121
Q ss_pred -EEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeee------cCceEEEEEECCCCceEEEeC
Q psy17863 121 -VMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV------GKAVVNSLCSHPTRKHIMSAC 193 (341)
Q Consensus 121 -i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 193 (341)
+.+.+.. ..++..+..++-+.++.|..+|.+.+.|++....+....... ....+.++.|..
T Consensus 78 P~~l~~~~---~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~v--------- 145 (395)
T PF08596_consen 78 PLTLLDAK---QGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSV--------- 145 (395)
T ss_dssp EEEEE------S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEE---------
T ss_pred chhheecc---CCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEE---------
Confidence 2233333 457788888888899999999999999998766554432211 112233333220
Q ss_pred CCceEEEEcccccCCCCeEEEEEccCC---CEEEEeecCCeEEEEeccc---cce----eeeecCcccceeEEEEEeCCC
Q psy17863 194 GNNVKLWTAEEDYGQEPIVDACFTRDC---QCILTCSTDECLRLFDKAT---GEL----LEEYKGHKSGDFRIECCLDSK 263 (341)
Q Consensus 194 ~~~i~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~d~~i~i~d~~~---~~~----~~~~~~~~~~~~~~~~~~~~~ 263 (341)
+.+..|+ -.+++|+..|.+.+|.+.- +.. ......+.+++..+.. ++.+
T Consensus 146 --------------------m~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~-i~~~ 204 (395)
T PF08596_consen 146 --------------------MTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIP-INAD 204 (395)
T ss_dssp --------------------EE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEE-EETT
T ss_pred --------------------EecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEE-EECC
Confidence 0000111 2355666666666665431 111 1111123333333321 1111
Q ss_pred --------------------CCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEE-----cCCCcEEEEeC-CC
Q psy17863 264 --------------------DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS-----HPTRKHIMSAC-GN 317 (341)
Q Consensus 264 --------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~-d~ 317 (341)
-+-++....+..++++...+.+...+.. ........+.+ ...+..|++-. +|
T Consensus 205 ~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G 282 (395)
T PF08596_consen 205 TGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNG 282 (395)
T ss_dssp T--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTS
T ss_pred CCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCC
Confidence 0123333446789999988877766554 22223333444 23466677777 99
Q ss_pred cEEEEEcccccCCcc
Q psy17863 318 NVKLWTAEEDYGQAG 332 (341)
Q Consensus 318 ~i~vw~~~~~~~~~~ 332 (341)
.|+++.++.-.....
T Consensus 283 ~i~i~SLP~Lkei~~ 297 (395)
T PF08596_consen 283 SIRIYSLPSLKEIKS 297 (395)
T ss_dssp EEEEEETTT--EEEE
T ss_pred cEEEEECCCchHhhc
Confidence 999999987554443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0012 Score=50.79 Aligned_cols=242 Identities=11% Similarity=0.089 Sum_probs=138.9
Q ss_pred EEEEEccCC-CEEEEEeCCCe-EEEEcCCCcceeeEecCcccc--eeEEEEecCCCEEEEecCC-----CcEEEEECCCC
Q psy17863 17 RAVRFNVDG-SYCLTCGSDKK-IKLWNPYRNLLLKTYGGHAHE--VNDATAACDSSQIASGASD-----KSVILWEVTTG 87 (341)
Q Consensus 17 ~~~~~~~~~-~~l~t~~~dg~-i~iw~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~ 87 (341)
..|+|+|.. .-++.+-.-|+ ..++|....+...++...++. --.=.|+|||.+|...-.| |.|-|||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 356677753 34445544443 567888777665554322211 1123689999998876443 78999998754
Q ss_pred -ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEE-EecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcce
Q psy17863 88 -QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW-DVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 88 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
+.+..+..|.-.-..+.+.+||+.++.+. |-|..- |....+ +-.-+..-.+.+.|..++..+
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~--------------lNldsMePSlvlld~atG~li 214 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTE--------------LNLDSMEPSLVLLDAATGNLI 214 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccc--------------cchhhcCccEEEEeccccchh
Confidence 45667788887888899999999988874 444443 211100 011112223444555555554
Q ss_pred eeeEee--ecCceEEEEEECCCCceEEEeCC-----------------CceEEEEccccc---CCCCeEEEEEccCCCEE
Q psy17863 166 STLIHS--VGKAVVNSLCSHPTRKHIMSACG-----------------NNVKLWTAEEDY---GQEPIVDACFTRDCQCI 223 (341)
Q Consensus 166 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-----------------~~i~~~~~~~~~---~~~~i~~~~~~~~~~~l 223 (341)
.+.... ...-.+..+...+++..++.+.- +.+...++..+. ....|-+++.+.+..++
T Consensus 215 ekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV 294 (366)
T COG3490 215 EKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLV 294 (366)
T ss_pred hhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeE
Confidence 443332 34455778888888877665531 123333333222 23446677777655555
Q ss_pred EE-eecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEe
Q psy17863 224 LT-CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 280 (341)
Q Consensus 224 ~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (341)
+. .-..+...+||..+|..+..-.-... ..+ + +...-++..+.+|.+.++.
T Consensus 295 ~lTSP~GN~~vi~da~tG~vv~~a~l~da--aGv--a--~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 295 ALTSPRGNRAVIWDAATGAVVSEAALPDA--AGV--A--AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEecCCCCeEEEEEcCCCcEEeccccccc--ccc--e--eccCceEEecCCceEEecc
Confidence 44 44455688999999987655432221 111 2 2233466666788888774
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00066 Score=57.27 Aligned_cols=189 Identities=13% Similarity=0.100 Sum_probs=107.1
Q ss_pred cceeeEecCcccceeEEEEecCCCEEEEec---CC-CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEe-cCCC
Q psy17863 45 NLLLKTYGGHAHEVNDATAACDSSQIASGA---SD-KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISG-SQDN 119 (341)
Q Consensus 45 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d-g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~ 119 (341)
+.....+......+..-+|+|+++.++... .. ..+.++++++++...... ..+.-..-+|+|||+.|+-. ..||
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC
Confidence 444445554556677788999988765442 22 469999999887655544 23333456899998877654 4455
Q ss_pred eEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC--Cc-
Q psy17863 120 TVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG--NN- 196 (341)
Q Consensus 120 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~- 196 (341)
...+|- +|+...... .+.. ....-..-.|+|+|+.++..++ +.
T Consensus 261 ~~~iy~-------------------------------~dl~~~~~~-~Lt~--~~gi~~~Ps~spdG~~ivf~Sdr~G~p 306 (425)
T COG0823 261 SPDIYL-------------------------------MDLDGKNLP-RLTN--GFGINTSPSWSPDGSKIVFTSDRGGRP 306 (425)
T ss_pred CccEEE-------------------------------EcCCCCcce-eccc--CCccccCccCCCCCCEEEEEeCCCCCc
Confidence 444332 233322211 1111 1112236678999999988875 43
Q ss_pred -eEEEEccccc------CCCCeEEEEEccCCCEEEEeecC-Ce--EEEEeccccceeeeecCcccceeEEEEEeCCCCCE
Q psy17863 197 -VKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTD-EC--LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ 266 (341)
Q Consensus 197 -i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d-~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (341)
|.+++.+... ....-..-.++|||++++..+.. |. |.+.|+.++...+.+..... ...- .+.++++.
T Consensus 307 ~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~-~e~p--s~~~ng~~ 383 (425)
T COG0823 307 QIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYL-NESP--SWAPNGRM 383 (425)
T ss_pred ceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccccc-CCCC--CcCCCCce
Confidence 5555554432 11122266789999999877643 33 66666665554333332111 1112 56777777
Q ss_pred EEEec
Q psy17863 267 IFCGS 271 (341)
Q Consensus 267 l~~~~ 271 (341)
+...+
T Consensus 384 i~~~s 388 (425)
T COG0823 384 IMFSS 388 (425)
T ss_pred EEEec
Confidence 65443
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0062 Score=54.99 Aligned_cols=308 Identities=8% Similarity=0.028 Sum_probs=167.1
Q ss_pred CCcEEEEEEccCC------CEEEEEeCCCeEEEE-cCCCcceeeEe----cCcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 13 QGAIRAVRFNVDG------SYCLTCGSDKKIKLW-NPYRNLLLKTY----GGHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 13 ~~~v~~~~~~~~~------~~l~t~~~dg~i~iw-~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
...|.|+.++|-| ++++.|..+..+.+- -..+...+... +.-...|.-..+-.|..+|.++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 3689999999842 267777765544433 22333333222 122345555666667889999999999886
Q ss_pred EECC--CCceeeee--cccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCC---------CCcCeEEeecCCCceEEEe
Q psy17863 82 WEVT--TGQPVRRW--REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR---------SHHPIQCCLDSKDSQIFCG 148 (341)
Q Consensus 82 w~~~--~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~ 148 (341)
+.+. +++.-..- .-...++.--.|+..++.-+-+..|.-..+|.-+.. +...+.........-.++.
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~ 689 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLAS 689 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEE
Confidence 6554 33321111 112345555556554333333334444444443321 1111111111111223333
Q ss_pred eccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC---------------CceEEEEccccc-------
Q psy17863 149 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG---------------NNVKLWTAEEDY------- 206 (341)
Q Consensus 149 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~i~~~~~~~~~------- 206 (341)
...+.+.+..+..-+.+..... +-......+++.+....+.+.+. ..++++|-.+-.
T Consensus 690 ~~~~~l~i~tid~iqkl~irtv-pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef 768 (1096)
T KOG1897|consen 690 ANGGALTIGTIDEIQKLHIRTV-PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEF 768 (1096)
T ss_pred ecCCceEEEEecchhhcceeee-cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccc
Confidence 4445566655554433332221 12234556666664443333321 124455443321
Q ss_pred ----CCCCeEEEEEccC-CCEEEEeec----------CCeEEEEeccccceeeeecCcc--cceeEEEEEeCCCCCEEEE
Q psy17863 207 ----GQEPIVDACFTRD-CQCILTCST----------DECLRLFDKATGELLEEYKGHK--SGDFRIECCLDSKDSQIFC 269 (341)
Q Consensus 207 ----~~~~i~~~~~~~~-~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~ 269 (341)
....+.++.|..| +.++++|+. .|.|.+|....+..++....+. +.+..+ . --+|+++|.
T Consensus 769 ~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL--~-~fngkllA~ 845 (1096)
T KOG1897|consen 769 ERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYAL--V-EFNGKLLAG 845 (1096)
T ss_pred cccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeeh--h-hhCCeEEEe
Confidence 2234555668877 777777764 4788888877644433332222 233333 1 235666665
Q ss_pred ecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 270 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 270 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
- ...|++|++.+.+.++.-. .+..++..+...-.|..+++|. -+++.+-....++
T Consensus 846 I--n~~vrLye~t~~~eLr~e~--~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 846 I--NQSVRLYEWTTERELRIEC--NISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred c--CcEEEEEEccccceehhhh--cccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 4 4579999998886666655 6778899999999999999998 7777776655544
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.005 Score=52.64 Aligned_cols=114 Identities=12% Similarity=0.115 Sum_probs=70.9
Q ss_pred cEEEEEEccCCCEEEEE-eCC----CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCC-----------c
Q psy17863 15 AIRAVRFNVDGSYCLTC-GSD----KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDK-----------S 78 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~-~~d----g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~ 78 (341)
.+...++||||+++|.+ +.. ..++++|+++++.+...- .......+.|.++++.|+....+. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-cccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34467899999999855 223 469999999997665321 111223399999988876654332 3
Q ss_pred EEEEECCCCcee--eeecccCcc--EEEEEEcCCCcEEEEecCC----CeEEEEEecCC
Q psy17863 79 VILWEVTTGQPV--RRWREHASK--VTCVKFNEDSSVVISGSQD----NTVMMWDVKSR 129 (341)
Q Consensus 79 i~iw~~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~ 129 (341)
|+.|.+.+.... ..+...... ...+..++++++|+..... ..+.+.++...
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 788888776432 333333222 5678889999987754332 34666666654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00021 Score=60.23 Aligned_cols=160 Identities=17% Similarity=0.147 Sum_probs=98.1
Q ss_pred ceEEEEEECCCCceEEEeC---C--CceEEEEcccccC------CCCeEEEEEccCCCEEEEe-ecCCe--EEEEecccc
Q psy17863 175 AVVNSLCSHPTRKHIMSAC---G--NNVKLWTAEEDYG------QEPIVDACFTRDCQCILTC-STDEC--LRLFDKATG 240 (341)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~---~--~~i~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~-~~d~~--i~i~d~~~~ 240 (341)
..+..-.|+|+++.++... . ..+.++++..... ...-...+|+|||+.|+.+ ..||. |+++|+..+
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence 4466778889888766542 2 3577888877653 3334456899999887754 44554 777788766
Q ss_pred ceeeeecCcccceeEEEEEeCCCCCEEEEec-CCCc--EEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC--
Q psy17863 241 ELLEEYKGHKSGDFRIECCLDSKDSQIFCGS-SDGK--IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-- 315 (341)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-- 315 (341)
+.. .+....+ +.. .-.|+|+|++++-.+ ..|. |.+.+.+.+.. ..+.. ....-..-.|+|||++++..+
T Consensus 273 ~~~-~Lt~~~g-i~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~--~~~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 273 NLP-RLTNGFG-INT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF--SGGGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred cce-ecccCCc-ccc-CccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec--cCCCCcCccCCCCCCEEEEEecc
Confidence 633 3432222 222 337999999887654 3444 66666554444 44431 222222778999999999887
Q ss_pred CCc--EEEEEcccccCCccceeeeecc
Q psy17863 316 GNN--VKLWTAEEDYGQAGLSSLYLNM 340 (341)
Q Consensus 316 d~~--i~vw~~~~~~~~~~~~~~~~~~ 340 (341)
+|. |.+.++.++...+.+...+.++
T Consensus 347 ~g~~~i~~~~~~~~~~~~~lt~~~~~e 373 (425)
T COG0823 347 GGQWDIDKNDLASGGKIRILTSTYLNE 373 (425)
T ss_pred CCceeeEEeccCCCCcEEEccccccCC
Confidence 565 6666666555445555544443
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0018 Score=53.13 Aligned_cols=168 Identities=10% Similarity=0.080 Sum_probs=98.9
Q ss_pred eEEEEEccCCcceeeeEeeecCceEE---EEEECC----CCceEEEeCC-----------CceEEEEcccc-----c---
Q psy17863 153 KIYKWQLVDSSQISTLIHSVGKAVVN---SLCSHP----TRKHIMSACG-----------NNVKLWTAEED-----Y--- 206 (341)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~-----------~~i~~~~~~~~-----~--- 206 (341)
.|++.|..+.+.+..+.....+ .+. .+.+.. ...++++++. |.+.++++... .
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E-~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNE-HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTE-EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCc-eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4566666665555544443322 233 233333 2456665531 56888887773 1
Q ss_pred -----CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEee
Q psy17863 207 -----GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 281 (341)
Q Consensus 207 -----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (341)
..++|++++-- +++ ++++. ++.|.+|++...+.+.....+..+.... +....+++++.|.....+.++.+
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~--sl~~~~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYIT--SLSVFKNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEE--EEEEETTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEE--EEeccccEEEEEEcccCEEEEEE
Confidence 45677777666 444 44443 5789999998777222222222323333 23333669999999899999877
Q ss_pred eC-CCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 282 VD-SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 282 ~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
.. ...+..+........++++.|-+++..++.+. +|.+.++..+.
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 65 33344444323456789999987777888888 99999999875
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.3e-05 Score=65.23 Aligned_cols=95 Identities=11% Similarity=0.041 Sum_probs=78.7
Q ss_pred CCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCccccee-EEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc
Q psy17863 208 QEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDF-RIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 286 (341)
Q Consensus 208 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (341)
...+..+.|+|.-..+|.+..+|.+.+..+. .+.+.++.-|..++. ++ +|.|||+.||.|-.||+|++.|++++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL--~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASL--CWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceee--eecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 3457778899999999999999999999987 777888887777776 55 8999999999999999999999999988
Q ss_pred eEEEEeeeeccceEEEEEcC
Q psy17863 287 ISTLIHSVGKAVVNSLCSHP 306 (341)
Q Consensus 287 ~~~~~~~~~~~~v~~~~~~~ 306 (341)
+..... .....|.++.|.|
T Consensus 97 l~~~~~-s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLF-SVETDISKGIWDR 115 (665)
T ss_pred eecccc-ccccchheeeccc
Confidence 877421 3566788888863
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0066 Score=51.43 Aligned_cols=196 Identities=12% Similarity=0.172 Sum_probs=99.0
Q ss_pred cEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC---------cCeEEe-----ecCCCc
Q psy17863 78 SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH---------HPIQCC-----LDSKDS 143 (341)
Q Consensus 78 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---------~~~~~~-----~~~~~~ 143 (341)
.|.+|+. .|+.+.++.-..+.+.++.|+.+. .|+....||.++++|+..... ..+..+ .....+
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 4888884 577777665445899999999865 456667899999999864330 000000 111122
Q ss_pred eEEEeeccCeEEEEEccCCc-ceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCE
Q psy17863 144 QIFCGSSDGKIYKWQLVDSS-QISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQC 222 (341)
Q Consensus 144 ~~~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (341)
++.-+.++.+.+.+-.... ....+..... ......+.+. ...+ ..++.+...
T Consensus 140 -ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~--~~~~~~~~~~----------------------~~~i--~~l~~~~~~ 192 (410)
T PF04841_consen 140 -IVVLTGNNRFYVVNNIDEPVKLRRLPEIPG--LWTKFHWWPS----------------------WTVI--PLLSSDRVV 192 (410)
T ss_pred -EEEECCCCeEEEEeCccccchhhccccCCC--cccccccccc----------------------cccc--eEeecCcce
Confidence 2222333333332211111 0000000000 0000000000 0001 234444444
Q ss_pred EEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEE
Q psy17863 223 ILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 302 (341)
Q Consensus 223 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 302 (341)
.+....++.+.+.+....+. +. ..+++..+ ++||+++++|.-..+|.+.+....-.+....+.. ........+
T Consensus 193 ~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~i--avSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~-~~~~~p~~~ 265 (410)
T PF04841_consen 193 EILLANGETIYIIDENSFKQ---ID-SDGPIIKI--AVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT-DSKSPPKQM 265 (410)
T ss_pred EEEEecCCEEEEEEcccccc---cc-CCCCeEEE--EECCCCCEEEEEECCCCEEEEECcccceeEEeec-CcCCCCcEE
Confidence 55555556666554332211 22 12345555 8999999999999999999987655555555542 123455667
Q ss_pred EEcCCCc
Q psy17863 303 CSHPTRK 309 (341)
Q Consensus 303 ~~~~~~~ 309 (341)
.|.-+..
T Consensus 266 ~WCG~da 272 (410)
T PF04841_consen 266 AWCGNDA 272 (410)
T ss_pred EEECCCc
Confidence 7765543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.4e-05 Score=40.97 Aligned_cols=38 Identities=34% Similarity=0.544 Sum_probs=33.7
Q ss_pred ceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 46 LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 46 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
+....+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45666778889999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0077 Score=48.26 Aligned_cols=220 Identities=10% Similarity=0.093 Sum_probs=118.3
Q ss_pred cCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeee---------
Q psy17863 23 VDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW--------- 93 (341)
Q Consensus 23 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------- 93 (341)
..++.|+.|..+| +.+++........... +...|..+...|+-+.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3578899999888 8999983333333332 233499999999877777665 499999998765433311
Q ss_pred -----cccCccEEEEE--EcCCCcEEEEecCCCeEEEEEecCCC--C-cCeEEeecCC--------CceEEEeeccCeEE
Q psy17863 94 -----REHASKVTCVK--FNEDSSVVISGSQDNTVMMWDVKSRS--H-HPIQCCLDSK--------DSQIFCGSSDGKIY 155 (341)
Q Consensus 94 -----~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~~--~-~~~~~~~~~~--------~~~~~~~~~~g~i~ 155 (341)
......+...+ -...+...+.......|.+|...... . .....+..+. ++.++.|. .....
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~-~~~f~ 160 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGT-SKGFY 160 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEe-CCceE
Confidence 11223344444 11233334444445689998887642 1 1222211111 33455555 44467
Q ss_pred EEEccCCcceeeeEeeec---------CceEEEEEECCCCceEEEeCCCceEEEEcccccCC-------CCeEEEEEccC
Q psy17863 156 KWQLVDSSQISTLIHSVG---------KAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQ-------EPIVDACFTRD 219 (341)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------~~i~~~~~~~~ 219 (341)
+.|+.++.....+..... ......+..-+++.++++. ++.-...+....... .....+++ .
T Consensus 161 ~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~-~~~g~fv~~~G~~~r~~~i~W~~~p~~~~~--~ 237 (275)
T PF00780_consen 161 LIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY-DNIGVFVNKNGEPSRKSTIQWSSAPQSVAY--S 237 (275)
T ss_pred EEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe-cceEEEEcCCCCcCcccEEEcCCchhEEEE--E
Confidence 778886555433321111 1112233333344555543 333333333332211 22333444 2
Q ss_pred CCEEEEeecCCeEEEEeccccceeeeecCcc
Q psy17863 220 CQCILTCSTDECLRLFDKATGELLEEYKGHK 250 (341)
Q Consensus 220 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 250 (341)
..++++... +.|.+|++.+++.++.+....
T Consensus 238 ~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 238 SPYLIAFSS-NSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred CCEEEEECC-CEEEEEECcCCcEEEEEECCC
Confidence 345666554 569999999999988887544
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.008 Score=48.44 Aligned_cols=135 Identities=10% Similarity=0.137 Sum_probs=79.7
Q ss_pred eEEEEEECCCCceEEEeCC----------CceEEEEcccc-c-------CCCCeEEEEEccCCCEEEEeecC-CeEEEEe
Q psy17863 176 VVNSLCSHPTRKHIMSACG----------NNVKLWTAEED-Y-------GQEPIVDACFTRDCQCILTCSTD-ECLRLFD 236 (341)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~----------~~i~~~~~~~~-~-------~~~~i~~~~~~~~~~~l~~~~~d-~~i~i~d 236 (341)
..+.....|+|.+.+.... ..-.+|.+... . +-..-+.++||||++.++..... +.|..|+
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 4556667777766665443 01234444321 1 12334679999999877776554 7788887
Q ss_pred ccc--cce-----eeeecCcccceeEEEEEeCCCCCEEEEecCCC-cEEEEeeeCCCceEEEEeeeeccceEEEEEc-CC
Q psy17863 237 KAT--GEL-----LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG-KIYKWQLVDSSQISTLIHSVGKAVVNSLCSH-PT 307 (341)
Q Consensus 237 ~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~ 307 (341)
+.. +.. ...+....+..-.+ +.+.+|++-+++..+| .|.+|+.. ++++..+. .....+++++|- |+
T Consensus 192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~--~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~--lP~~~~t~~~FgG~~ 266 (307)
T COG3386 192 LDPATGPIGGRRGFVDFDEEPGLPDGM--AVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK--LPVKRPTNPAFGGPD 266 (307)
T ss_pred cCcccCccCCcceEEEccCCCCCCCce--EEeCCCCEEEecccCCceEEEECCC-CcEEEEEE--CCCCCCccceEeCCC
Confidence 752 111 11111112222233 6778887776555554 89999976 99998888 444678888885 44
Q ss_pred CcEEEEeC
Q psy17863 308 RKHIMSAC 315 (341)
Q Consensus 308 ~~~l~~~~ 315 (341)
.+.|...+
T Consensus 267 ~~~L~iTs 274 (307)
T COG3386 267 LNTLYITS 274 (307)
T ss_pred cCEEEEEe
Confidence 45554444
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00061 Score=61.16 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=66.5
Q ss_pred EEEeecCCeEEEEeccccc-eeeeecC----cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeecc
Q psy17863 223 ILTCSTDECLRLFDKATGE-LLEEYKG----HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA 297 (341)
Q Consensus 223 l~~~~~d~~i~i~d~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (341)
.+.|-.+..+..||.+-.. .+..-.. ......++ +-+.+| +||.|+.+|.||+|| +.|..-.+..+ +-..
T Consensus 545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~--aTt~~G-~iavgs~~G~IRLyd-~~g~~AKT~lp-~lG~ 619 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF--ATTEDG-YIAVGSNKGDIRLYD-RLGKRAKTALP-GLGD 619 (794)
T ss_pred eEEEECCCceEEeccCCCCCceeeccccccccCCCceEE--EecCCc-eEEEEeCCCcEEeec-ccchhhhhcCC-CCCC
Confidence 4556667788888877432 1111111 11222333 455555 999999999999999 44444333322 5678
Q ss_pred ceEEEEEcCCCcEEEEeCCCcEEEEEcc
Q psy17863 298 VVNSLCSHPTRKHIMSACGNNVKLWTAE 325 (341)
Q Consensus 298 ~v~~~~~~~~~~~l~~~~d~~i~vw~~~ 325 (341)
+|.+|..+.||+++++.++..+.+++..
T Consensus 620 pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 620 PIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred CeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 9999999999999999998899998864
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.01 Score=54.10 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=49.5
Q ss_pred CCEEEEEeCCCeEEEEcCCCcceeeEecCcccc--------eeEEEEe----------------cCCCEEEEecCCCcEE
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE--------VNDATAA----------------CDSSQIASGASDKSVI 80 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~--------v~~~~~~----------------~~~~~l~~~~~dg~i~ 80 (341)
+..+..++.++.|.-.|..+|+.+.++...... ...+++. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777788899999999999988887532211 1112221 1344788888899999
Q ss_pred EEECCCCceeeeec
Q psy17863 81 LWEVTTGQPVRRWR 94 (341)
Q Consensus 81 iw~~~~~~~~~~~~ 94 (341)
-.|.++|+.+..+.
T Consensus 274 ALDA~TGk~~W~fg 287 (764)
T TIGR03074 274 ALDADTGKLCEDFG 287 (764)
T ss_pred EEECCCCCEEEEec
Confidence 99999998887664
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00085 Score=60.74 Aligned_cols=101 Identities=19% Similarity=0.249 Sum_probs=75.9
Q ss_pred CCCEEEEEeCCCeEEEEcCCCc-ceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEE
Q psy17863 24 DGSYCLTCGSDKKIKLWNPYRN-LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTC 102 (341)
Q Consensus 24 ~~~~l~t~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~ 102 (341)
.+..++.|++.|.+...|.... .+...=..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4556888888899999887543 111222334678999999999999999999999999999999999888777666555
Q ss_pred EEE---cCCCcEEEEecCCCeEEEEEe
Q psy17863 103 VKF---NEDSSVVISGSQDNTVMMWDV 126 (341)
Q Consensus 103 ~~~---~~~~~~l~~~~~d~~i~iwd~ 126 (341)
+-+ ..++..++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 543 445667888877776 5554
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.014 Score=49.15 Aligned_cols=250 Identities=14% Similarity=0.164 Sum_probs=141.4
Q ss_pred EEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC-CCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEe
Q psy17863 37 IKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS-DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISG 115 (341)
Q Consensus 37 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 115 (341)
+.+++..+......+..+. ....+...+++..+..... ...+...+................-..++.++.+..++..
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence 6666666655555554333 4556677787755544432 2234444443111111111111233456666666644433
Q ss_pred c-CCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC
Q psy17863 116 S-QDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG 194 (341)
Q Consensus 116 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (341)
. .++.|.+.|... .+........ .....++++|+++.+.++..
T Consensus 92 ~~~~~~v~vid~~~---------------------------------~~~~~~~~vG---~~P~~~~~~~~~~~vYV~n~ 135 (381)
T COG3391 92 TGDSNTVSVIDTAT---------------------------------NTVLGSIPVG---LGPVGLAVDPDGKYVYVANA 135 (381)
T ss_pred cCCCCeEEEEcCcc---------------------------------cceeeEeeec---cCCceEEECCCCCEEEEEec
Confidence 3 335555555332 2222222211 13566777777766666543
Q ss_pred ----CceEEEEccccc-------CCCCeEEEEEccCCCEEEEee-cCCeEEEEeccccceee-----eecCcccceeEEE
Q psy17863 195 ----NNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCS-TDECLRLFDKATGELLE-----EYKGHKSGDFRIE 257 (341)
Q Consensus 195 ----~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~-----~~~~~~~~~~~~~ 257 (341)
+.+.+.|..+.. ...+ ..++++|+|+.++... .++.|.+.|.......+ .......+ ..+
T Consensus 136 ~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P-~~i- 212 (381)
T COG3391 136 GNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGP-AGI- 212 (381)
T ss_pred ccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCC-ceE-
Confidence 345555544322 2233 7899999999766655 78899999976555442 12222222 223
Q ss_pred EEeCCCCCEEEEecCC---CcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC--CCcEEEEEccccc
Q psy17863 258 CCLDSKDSQIFCGSSD---GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY 328 (341)
Q Consensus 258 ~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~~~ 328 (341)
.++++++++...... +.+...|..++.....-...... ....+..+|+|..+.+.. .+.+.+-|..+..
T Consensus 213 -~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 213 -AVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred -EECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 788999976655433 58999998887766652211222 566788999999998886 5788888876643
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.4e-06 Score=69.94 Aligned_cols=149 Identities=16% Similarity=0.268 Sum_probs=94.3
Q ss_pred cCceEEEEEECCC-CceEEEeC-----CCceEEEEccccc------------CCCCeEEEEEccCCCEEEEeecCCeEEE
Q psy17863 173 GKAVVNSLCSHPT-RKHIMSAC-----GNNVKLWTAEEDY------------GQEPIVDACFTRDCQCILTCSTDECLRL 234 (341)
Q Consensus 173 ~~~~~~~~~~~~~-~~~~~~~~-----~~~i~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i 234 (341)
.....++++|++- ...++++- +..+.+||+.... ......+++|..+.+.+.+|.....+.+
T Consensus 101 ~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~i 180 (783)
T KOG1008|consen 101 YARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHI 180 (783)
T ss_pred ccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhh
Confidence 4456788888875 45555554 3469999987752 2234457888888999999999999999
Q ss_pred Eecccc-ceeeeecCcccceeEEEEEeCC-CCCEEEEecCCCcEEEEe-eeCCC-ceEEEEee--eeccceEEEEEcCCC
Q psy17863 235 FDKATG-ELLEEYKGHKSGDFRIECCLDS-KDSQIFCGSSDGKIYKWQ-LVDSS-QISTLIHS--VGKAVVNSLCSHPTR 308 (341)
Q Consensus 235 ~d~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd-~~~~~-~~~~~~~~--~~~~~v~~~~~~~~~ 308 (341)
+|++.. .....+. +..+..+ ..+| .++++++-. ||.|.+|| ..+-+ ++..+... .....+..++|+|..
T Consensus 181 fdlRqs~~~~~svn--Tk~vqG~--tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 181 FDLRQSLDSVSSVN--TKYVQGI--TVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred hhhhhhhhhhhhhh--hhhcccc--eecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 998832 2222222 1122233 4555 555777665 99999999 33322 22222210 112358999999975
Q ss_pred c-EEEEeC--CCcEEEEEccc
Q psy17863 309 K-HIMSAC--GNNVKLWTAEE 326 (341)
Q Consensus 309 ~-~l~~~~--d~~i~vw~~~~ 326 (341)
. .+++.. .++|+++++..
T Consensus 256 tglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 256 TGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cchhhhhccCcceEEEecccc
Confidence 4 455555 67899998764
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.011 Score=47.36 Aligned_cols=211 Identities=15% Similarity=0.170 Sum_probs=120.8
Q ss_pred cCCCEEEEecCCCcEEEEECCCC-ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcC----------
Q psy17863 65 CDSSQIASGASDKSVILWEVTTG-QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP---------- 133 (341)
Q Consensus 65 ~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---------- 133 (341)
..++.|+.|+.+| +.+++.... +..+.. +...|..+...|+-+.|++-+ |+.+.++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578899999998 999998333 333322 233499999999777776665 5999999976532211
Q ss_pred ------------eEEee---cCCCceEEEeeccCeEEEEEccCCcc-e-eeeEeeecCceEEEEEECCCCceEEEeCCCc
Q psy17863 134 ------------IQCCL---DSKDSQIFCGSSDGKIYKWQLVDSSQ-I-STLIHSVGKAVVNSLCSHPTRKHIMSACGNN 196 (341)
Q Consensus 134 ------------~~~~~---~~~~~~~~~~~~~g~i~~~d~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (341)
..... ...+...++.....+|.+|....... . .....-.-...+..++|. +..++.+..+.
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~ 158 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKG 158 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCc
Confidence 11111 22333445555566888888776421 1 222222234567888888 66777777777
Q ss_pred eEEEEcccccC-------------------CCCeEEEEEccCCCEEEEeecCCeEEEEeccccceee--eecCcccceeE
Q psy17863 197 VKLWTAEEDYG-------------------QEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLE--EYKGHKSGDFR 255 (341)
Q Consensus 197 i~~~~~~~~~~-------------------~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~ 255 (341)
..+.|+.+... ..++..+.. +++.+|++. +..-.+.|. .|+..+ .+.-.. ....
T Consensus 159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~-~p~~ 233 (275)
T PF00780_consen 159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSS-APQS 233 (275)
T ss_pred eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEEcCC-chhE
Confidence 88888774321 112222222 334555543 333333343 344333 222112 2222
Q ss_pred EEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 256 IECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 256 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
+ ++. ..+|++...+ .|.||++.+++.++.+.
T Consensus 234 ~--~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 234 V--AYS--SPYLIAFSSN-SIEVRSLETGELVQTIP 264 (275)
T ss_pred E--EEE--CCEEEEECCC-EEEEEECcCCcEEEEEE
Confidence 3 332 3477776654 59999999999988887
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0088 Score=52.97 Aligned_cols=173 Identities=14% Similarity=0.069 Sum_probs=97.7
Q ss_pred CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEec------CCC--cEEEEECCCCceeeeecccCccEEEEEE
Q psy17863 34 DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA------SDK--SVILWEVTTGQPVRRWREHASKVTCVKF 105 (341)
Q Consensus 34 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg--~i~iw~~~~~~~~~~~~~~~~~v~~~~~ 105 (341)
+|.+.-.+-..-..+.-..+....+...+++|+|+.++... .|+ .|.+++. .+.. ..+.. ....+.-.|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceE
Confidence 66665544322222222223334678899999999887654 244 4555554 2222 33322 223788899
Q ss_pred cCCCcEEEEecCCCeE-EEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECC
Q psy17863 106 NEDSSVVISGSQDNTV-MMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 184 (341)
Q Consensus 106 ~~~~~~l~~~~~d~~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (341)
+|+|+.+++......+ ++.+ ....+.+.+.++..+.... .....|..+.|+|
T Consensus 405 spDG~~lw~v~dg~~~~~v~~----------------------~~~~gql~~~~vd~ge~~~-----~~~g~Issl~wSp 457 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIR----------------------DPATGQLARTPVDASAVAS-----RVPGPISELQLSR 457 (591)
T ss_pred CCCCCceEEEecCcceEEEec----------------------cCCCceEEEEeccCchhhh-----ccCCCcCeEEECC
Confidence 9999888887643222 1111 1123455555655443322 1234599999999
Q ss_pred CCceEEEeCCCceEEEEccc---cc------------CCCCeEEEEEccCCCEEEEeecCCeEEEEec
Q psy17863 185 TRKHIMSACGNNVKLWTAEE---DY------------GQEPIVDACFTRDCQCILTCSTDECLRLFDK 237 (341)
Q Consensus 185 ~~~~~~~~~~~~i~~~~~~~---~~------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 237 (341)
+|..++...++.+.+--+.. +. ....+.++.|.+++.++ ++..++...+|.+
T Consensus 458 DG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 458 DGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred CCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 99998887777776633222 11 11235778899999855 5555544444543
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.007 Score=50.10 Aligned_cols=258 Identities=12% Similarity=0.137 Sum_probs=104.3
Q ss_pred CCCEEEEEe-CCCeEEEEcCCC----cceeeEecC---cc----cceeEEEEecCCCEEEEecC------CCcEEEEECC
Q psy17863 24 DGSYCLTCG-SDKKIKLWNPYR----NLLLKTYGG---HA----HEVNDATAACDSSQIASGAS------DKSVILWEVT 85 (341)
Q Consensus 24 ~~~~l~t~~-~dg~i~iw~~~~----~~~~~~~~~---~~----~~v~~~~~~~~~~~l~~~~~------dg~i~iw~~~ 85 (341)
+.++|+..+ ..+.|.|.|+.+ .+..+.+.. +. ..-..+..-|+|+.++++-. -|-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 678899999873 344444432 11 12223344578888887532 2558888877
Q ss_pred CCceeeeeccc---CccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 86 TGQPVRRWREH---ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 86 ~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
+.+........ ...-..+.|.|..+.++|.....- +.+ ..+ +.+ ..+..+....++.+||+.+.
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P-~~~--~~G---------f~~-~d~~~~~yG~~l~vWD~~~r 232 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAP-SMF--EKG---------FNP-EDLEAGKYGHSLHVWDWSTR 232 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---H-HHH--TT------------T-TTHHHH-S--EEEEEETTTT
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCCh-hhc--ccC---------CCh-hHhhcccccCeEEEEECCCC
Confidence 77776666542 233456778888888888653210 000 000 000 01222233468999999999
Q ss_pred cceeeeEeeecCceEEEEEEC--CCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEE------
Q psy17863 163 SQISTLIHSVGKAVVNSLCSH--PTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRL------ 234 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i------ 234 (341)
+.++.+........+..+.|. |+..+-++++.-+-.||.+-.. .++.+-+ +..|.|
T Consensus 233 ~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~------------~~g~W~a----~kVi~ip~~~v~ 296 (461)
T PF05694_consen 233 KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKD------------DDGEWAA----EKVIDIPAKKVE 296 (461)
T ss_dssp EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-------------ETTEEEE----EEEEEE--EE--
T ss_pred cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEc------------CCCCeee----eEEEECCCcccC
Confidence 888888765443344455543 3333333332111111111100 0010000 000000
Q ss_pred -EeccccceeeeecCcccceeEEEEEeCCCCCEEEEe-cCCCcEEEEeeeCCCceEEE---Eee--------------ee
Q psy17863 235 -FDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG-SSDGKIYKWQLVDSSQISTL---IHS--------------VG 295 (341)
Q Consensus 235 -~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~---~~~--------------~~ 295 (341)
|.+. +.++.+..-..-++.+ .+|.|.++|... -..|.|+.||+.+....... ... .-
T Consensus 297 ~~~lp--~ml~~~~~~P~LitDI--~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l 372 (461)
T PF05694_consen 297 GWILP--EMLKPFGAVPPLITDI--LISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRL 372 (461)
T ss_dssp SS-----GGGGGG-EE------E--EE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-----
T ss_pred ccccc--ccccccccCCCceEeE--EEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccccc
Confidence 1100 0111111112233444 789999998765 46899999999875433222 210 01
Q ss_pred ccceEEEEEcCCCcEEEEe
Q psy17863 296 KAVVNSLCSHPTRKHIMSA 314 (341)
Q Consensus 296 ~~~v~~~~~~~~~~~l~~~ 314 (341)
.+...-+..|.||+.|...
T Consensus 373 ~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 373 RGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -S----EEE-TTSSEEEEE
T ss_pred CCCCCeEEEccCCeEEEEE
Confidence 1234678889999888765
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0039 Score=41.04 Aligned_cols=93 Identities=18% Similarity=0.215 Sum_probs=59.4
Q ss_pred eeEEEEec---CC-CEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEe-------
Q psy17863 58 VNDATAAC---DS-SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV------- 126 (341)
Q Consensus 58 v~~~~~~~---~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~------- 126 (341)
|+++++.. || +.|++|+.|..|++|+- .+.+..+. ..+.|++++-... ..++.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWRi 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWRI 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeeee
Confidence 56666654 22 57999999999999984 36666666 3566777777765 56888888888877653
Q ss_pred cCCCCcCeEEeecCCCc----eEEEeeccCeEE
Q psy17863 127 KSRSHHPIQCCLDSKDS----QIFCGSSDGKIY 155 (341)
Q Consensus 127 ~~~~~~~~~~~~~~~~~----~~~~~~~~g~i~ 155 (341)
++... +.......-++ .|++|-.+|.|-
T Consensus 78 KSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 78 KSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 33332 22222222111 577777777663
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00072 Score=56.45 Aligned_cols=136 Identities=18% Similarity=0.309 Sum_probs=97.0
Q ss_pred CCCEEE-EecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCc-------EEEEecCCCeEEEEEecCCCC------
Q psy17863 66 DSSQIA-SGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSS-------VVISGSQDNTVMMWDVKSRSH------ 131 (341)
Q Consensus 66 ~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~i~iwd~~~~~~------ 131 (341)
+.++|+ ++.....++-.|++.|+.+..++.+.. |.-+.+.|+.+ .-+.|-.|..|.-||++-...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444444 445556688899999999999987766 77777777543 123455678899999875332
Q ss_pred --------cCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcc
Q psy17863 132 --------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 203 (341)
Q Consensus 132 --------~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 203 (341)
....|.....++++++|+.+|.|++||- .+....+.... -..+|..+..+.+|++++++++..+.+.+..
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPg-LG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPG-LGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred eccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccc-cCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 2345666677889999999999999997 33332222222 2356899999999999999999888777654
Q ss_pred c
Q psy17863 204 E 204 (341)
Q Consensus 204 ~ 204 (341)
-
T Consensus 501 ~ 501 (644)
T KOG2395|consen 501 I 501 (644)
T ss_pred c
Confidence 3
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0052 Score=54.34 Aligned_cols=103 Identities=9% Similarity=0.051 Sum_probs=65.6
Q ss_pred CcEEEEEEccCCCEEEEEe------CCC--eEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCC---------
Q psy17863 14 GAIRAVRFNVDGSYCLTCG------SDK--KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD--------- 76 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~------~dg--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------- 76 (341)
..+...+++|||+.+|... .|+ .|.+++. .+.. ..+.. ....+.-.|+|+|+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999887655 243 4555554 2222 33321 2237888999998877766422
Q ss_pred ---CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEE
Q psy17863 77 ---KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMM 123 (341)
Q Consensus 77 ---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 123 (341)
+.+.+.+++.++... .....|..+.|+|||..++... ++.|.+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 234334544443322 2356799999999999888765 467766
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.02 Score=50.78 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=53.4
Q ss_pred cCCCEEEEEeCC------CeEEEEcCCCcceeeEecC-cccceeEEEEecCCCEEEEecCC------CcEEEEECCCCce
Q psy17863 23 VDGSYCLTCGSD------KKIKLWNPYRNLLLKTYGG-HAHEVNDATAACDSSQIASGASD------KSVILWEVTTGQP 89 (341)
Q Consensus 23 ~~~~~l~t~~~d------g~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~ 89 (341)
..+.+++.||.+ ..+..||..+++......- ....-.+++.. ++...++|+.| .++..||...++-
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 346677788876 3688899887643332221 22223444444 56788888888 3467788776653
Q ss_pred ee--eecccCccEEEEEEcCCCcEEEEecCCCe
Q psy17863 90 VR--RWREHASKVTCVKFNEDSSVVISGSQDNT 120 (341)
Q Consensus 90 ~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 120 (341)
.. .+...........+ +|...+.|+.||.
T Consensus 362 ~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~ 392 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGE 392 (571)
T ss_pred eccCCccCccccceeEEE--CCEEEEEeccccc
Confidence 32 22211111111111 5778888888753
|
|
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00024 Score=52.68 Aligned_cols=105 Identities=11% Similarity=0.064 Sum_probs=70.8
Q ss_pred CCEEEEeecCCeEEEEecccc-ceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeec-c
Q psy17863 220 CQCILTCSTDECLRLFDKATG-ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK-A 297 (341)
Q Consensus 220 ~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~ 297 (341)
+..+++|+.+|.|++|..... .....+..-...+.++ +....++.+..++..||.|+.|++.-.+.+.... .|. .
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~-Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g--~h~~~ 146 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG-IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG--QHNFE 146 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceec-cccccccceeEEeccCCceeeeccccCceeeeec--cccCC
Confidence 345899999999999987622 2222222222222222 1233445578899999999999998887776666 555 5
Q ss_pred ceEEEEEcCCCcEEEEe--C-CCcEEEEEcccc
Q psy17863 298 VVNSLCSHPTRKHIMSA--C-GNNVKLWTAEED 327 (341)
Q Consensus 298 ~v~~~~~~~~~~~l~~~--~-d~~i~vw~~~~~ 327 (341)
++..+..+..+++++.+ + |..++.|++..-
T Consensus 147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 147 SGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred CcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 66666667777788877 6 888888888754
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.026 Score=46.85 Aligned_cols=128 Identities=11% Similarity=0.225 Sum_probs=70.5
Q ss_pred eEEEEEccCCCEEEEeec--------------------CCeEEEEeccccceeeeecCcccc--eeEEEEEeCCCCCEEE
Q psy17863 211 IVDACFTRDCQCILTCST--------------------DECLRLFDKATGELLEEYKGHKSG--DFRIECCLDSKDSQIF 268 (341)
Q Consensus 211 i~~~~~~~~~~~l~~~~~--------------------d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~ 268 (341)
-..+-+.|..+.+++... ..++.+||+.+.+.++++.-.... ..-+++...|+..+=+
T Consensus 183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gF 262 (461)
T PF05694_consen 183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGF 262 (461)
T ss_dssp ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEE
T ss_pred CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceE
Confidence 345667777777766532 367999999999999988754433 3456666777776644
Q ss_pred Ee-cCCCcEEEEee-eCCC----ceEEEEeeee---------------ccceEEEEEcCCCcEEEEeC--CCcEEEEEcc
Q psy17863 269 CG-SSDGKIYKWQL-VDSS----QISTLIHSVG---------------KAVVNSLCSHPTRKHIMSAC--GNNVKLWTAE 325 (341)
Q Consensus 269 ~~-~~dg~i~iwd~-~~~~----~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~ 325 (341)
+| .-.++|..|-- ..++ .+..+..... ..-|+.+..|.|.++|..++ +|.|+.||+.
T Consensus 263 vg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 263 VGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp EEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred EEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 33 34455555543 3432 2222221100 24589999999999999888 9999999999
Q ss_pred cccCCccceeeee
Q psy17863 326 EDYGQAGLSSLYL 338 (341)
Q Consensus 326 ~~~~~~~~~~~~~ 338 (341)
....++.....++
T Consensus 343 DP~~Pkl~gqv~l 355 (461)
T PF05694_consen 343 DPFNPKLVGQVFL 355 (461)
T ss_dssp STTS-EEEEEEE-
T ss_pred CCCCCcEEeEEEE
Confidence 9888877766654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0038 Score=51.46 Aligned_cols=218 Identities=10% Similarity=0.080 Sum_probs=128.5
Q ss_pred CCcEEEEecCCCeEEEEEecCCCCcCeE------------------EeecCCCceEEEeeccCeEEEEEccCCcceeeeE
Q psy17863 108 DSSVVISGSQDNTVMMWDVKSRSHHPIQ------------------CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 169 (341)
Q Consensus 108 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------------~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 169 (341)
....++.+..||.+.+....-....+.. ....+.+...++.+.+....+++......+....
T Consensus 126 gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~g~~p~aLd~qgr~leh~~~~lalA~~~~~qf~~~~~t~~~~~L~g~ 205 (733)
T COG4590 126 GQPWFALGLSNGQVAVVQPQLSHTMPTPGREFPPGLEPLALDEQGRLLEHPLQQLALALTAEAQFATYDNTQQIQILRGD 205 (733)
T ss_pred CCceEEEeccCCeEEEEeccccccCCCCCccCCCCCCccccCcccCcccchHHHhhhccchhhHHHHhhhhhhhhhhhcc
Confidence 5567888999999998875432211100 0111112234444555544444443222111110
Q ss_pred ----------eeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCC-------------CeE-EEEEccCCCEEEE
Q psy17863 170 ----------HSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQE-------------PIV-DACFTRDCQCILT 225 (341)
Q Consensus 170 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------------~i~-~~~~~~~~~~l~~ 225 (341)
.......+..+-..|+++.+..-+++.+.++++.+..-+. .++ .+..-..|.-+++
T Consensus 206 ~t~q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv 285 (733)
T COG4590 206 RTTQQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLV 285 (733)
T ss_pred cCchhhhhhhcCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEE
Confidence 1122345778889999999999999999999887654111 111 1112234566888
Q ss_pred eecCCeEEEE-ecccc-c----eeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccce
Q psy17863 226 CSTDECLRLF-DKATG-E----LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVV 299 (341)
Q Consensus 226 ~~~d~~i~i~-d~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 299 (341)
++.||.|.-| |.+.+ . .++.++-...++..+ ....+.+-+++-...|++.++.....+.+ -+. .-...+
T Consensus 286 ~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l--~pe~~rkgF~~l~~~G~L~~f~st~~~~l-L~~--~~~~~~ 360 (733)
T COG4590 286 VHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFL--LPETNRKGFYSLYRNGTLQSFYSTSEKLL-LFE--RAYQAP 360 (733)
T ss_pred EcCCCceeeeeeeecCCCCcceeeeccccCcccceee--ccccccceEEEEcCCCceeeeecccCcce-ehh--hhhcCc
Confidence 8999988887 44322 1 122333223334333 33444556888888999998874433333 222 223467
Q ss_pred EEEEEcCCCcEEEEeCCCcEEEEEcccccCC
Q psy17863 300 NSLCSHPTRKHIMSACGNNVKLWTAEEDYGQ 330 (341)
Q Consensus 300 ~~~~~~~~~~~l~~~~d~~i~vw~~~~~~~~ 330 (341)
.-+++||.+.+|++-..|.++++.+++....
T Consensus 361 ~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 361 QLVAMSPNQAYLLSEDQGKIRLAQLENRNPE 391 (733)
T ss_pred ceeeeCcccchheeecCCceEEEEecCCCCC
Confidence 7789999999999988899999999876544
|
|
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00038 Score=51.64 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=63.2
Q ss_pred CCEEEEEeCCCeEEEEcCCCcc-eeeEecCcccceeEE-EEecCCCEEEEecCCCcEEEEECCCCceeeeecccC-ccEE
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNL-LLKTYGGHAHEVNDA-TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHA-SKVT 101 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~v~ 101 (341)
+..++.|+.+|.|.+|+..... ....+..-...|.++ .-..++.+..+++.||.|+.|++.-++.+.....|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 4568889999999999976221 111112222233332 223355688899999999999998888777766676 4444
Q ss_pred EEEEcCCCcEEEEe--cCCCeEEEEEecC
Q psy17863 102 CVKFNEDSSVVISG--SQDNTVMMWDVKS 128 (341)
Q Consensus 102 ~~~~~~~~~~l~~~--~~d~~i~iwd~~~ 128 (341)
....+..+..++.+ +.|..++.|++..
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchhh
Confidence 44444444444444 5555555555543
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.018 Score=51.12 Aligned_cols=90 Identities=9% Similarity=0.078 Sum_probs=46.7
Q ss_pred CeEEEEeccccc--eeeeecCcccceeEEEEEeCCCCCEEEEecCC------CcEEEEeeeC-CCce--EEEEeeeeccc
Q psy17863 230 ECLRLFDKATGE--LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD------GKIYKWQLVD-SSQI--STLIHSVGKAV 298 (341)
Q Consensus 230 ~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~--~~~~~~~~~~~ 298 (341)
..+..||..+.+ .+..+....... . +..-+++..+.|+.+ ..+..||..+ .+-. ..++ .....
T Consensus 432 ~~ve~YDP~td~W~~v~~m~~~r~~~-~---~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~--~~r~~ 505 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNFWTGTIRP-G---VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE--SRLSA 505 (557)
T ss_pred ceEEEECCCCCeEeecCCCCcccccC-c---EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC--ccccc
Confidence 357788876543 223222111111 1 122346666667654 2467888776 3322 2222 12222
Q ss_pred eEEEEEcCCCcEEEEeC-CC--cEEEEEcccc
Q psy17863 299 VNSLCSHPTRKHIMSAC-GN--NVKLWTAEED 327 (341)
Q Consensus 299 v~~~~~~~~~~~l~~~~-d~--~i~vw~~~~~ 327 (341)
...+. -++++.++|+ ++ .+..||+.++
T Consensus 506 ~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 506 LHTIL--HDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred ceeEE--ECCEEEEEeeecceeehhhcCcccc
Confidence 22222 3688888998 87 6777877765
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00067 Score=61.37 Aligned_cols=96 Identities=18% Similarity=0.262 Sum_probs=69.3
Q ss_pred CCCceEEEeCC-CceEEEEccc--------ccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCccccee
Q psy17863 184 PTRKHIMSACG-NNVKLWTAEE--------DYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDF 254 (341)
Q Consensus 184 ~~~~~~~~~~~-~~i~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 254 (341)
-.+..++.+++ +.+...|... .....++++++|+.+|++++.|-.+|.|.+||...++.++.+..|..+..
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 33444555554 5555555443 22578999999999999999999999999999999999888877766655
Q ss_pred EEE-EEeCCCCCEEEEecCCCcEEEEee
Q psy17863 255 RIE-CCLDSKDSQIFCGSSDGKIYKWQL 281 (341)
Q Consensus 255 ~~~-~~~~~~~~~l~~~~~dg~i~iwd~ 281 (341)
.+- ..+..++..++++...|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 442 235556667888877776 5544
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.032 Score=44.81 Aligned_cols=114 Identities=10% Similarity=0.031 Sum_probs=59.5
Q ss_pred ccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEee-eC
Q psy17863 205 DYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL-VD 283 (341)
Q Consensus 205 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~-~~ 283 (341)
......+..+..+++|++++++.......-||.-...-...-+.....+..+ .|.|++.+.+.+ ..|.|++=+. ..
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~--gf~~~~~lw~~~-~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSM--GFSPDGNLWMLA-RGGQIQFSDDPDD 217 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEE--EE-TTS-EEEEE-TTTEEEEEE-TTE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhc--eecCCCCEEEEe-CCcEEEEccCCCC
Confidence 3355778889999999999888776667777743221111222234566666 788997665544 7888887661 11
Q ss_pred CCceEE--EEeeeeccceEEEEEcCCCcEEEEeCCCcEEE
Q psy17863 284 SSQIST--LIHSVGKAVVNSLCSHPTRKHIMSACGNNVKL 321 (341)
Q Consensus 284 ~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v 321 (341)
.+.... .+.....-.+..++|.++++..|+++.|.+..
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~ 257 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV 257 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE
T ss_pred ccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE
Confidence 111111 11001233589999999999999888775544
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00045 Score=37.80 Aligned_cols=34 Identities=3% Similarity=-0.022 Sum_probs=30.0
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcce
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLL 47 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~ 47 (341)
...|.+++|+|..++||.+..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 357999999999999999999999999998 5544
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0035 Score=52.53 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=65.6
Q ss_pred EEeecCCeEEEEeccccc--eeeeecCcccc-eeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEE-EEeeeeccce
Q psy17863 224 LTCSTDECLRLFDKATGE--LLEEYKGHKSG-DFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST-LIHSVGKAVV 299 (341)
Q Consensus 224 ~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v 299 (341)
+.|-.+..|.-||++-.. .+..-++|.-. -+...|.......++++|+.+|.|++||- .+....+ ++ +-..+|
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlP--gLG~~I 474 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALP--GLGDAI 474 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccc--ccCCce
Confidence 456667788888876322 22222333210 01111122233449999999999999995 5544433 44 678899
Q ss_pred EEEEEcCCCcEEEEeCCCcEEEEEcc
Q psy17863 300 NSLCSHPTRKHIMSACGNNVKLWTAE 325 (341)
Q Consensus 300 ~~~~~~~~~~~l~~~~d~~i~vw~~~ 325 (341)
..+..+.+|++++..++..+.+-++.
T Consensus 475 ~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 475 KHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred eeEEeeccCcEEEEecccEEEEEEEe
Confidence 99999999999998888888887765
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00077 Score=36.89 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=30.5
Q ss_pred cccceeEEEEecCCCEEEEecCCCcEEEEECCCCce
Q psy17863 54 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP 89 (341)
Q Consensus 54 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 89 (341)
....|.+++|+|...+||.++.+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3456999999999999999999999999998 5554
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.013 Score=51.84 Aligned_cols=65 Identities=9% Similarity=0.155 Sum_probs=36.5
Q ss_pred CCCEEEEeecC------CeEEEEeccc-c--ceeeeecCcccceeEEEEEeCCCCCEEEEecCCC--cEEEEeeeCCCce
Q psy17863 219 DCQCILTCSTD------ECLRLFDKAT-G--ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG--KIYKWQLVDSSQI 287 (341)
Q Consensus 219 ~~~~l~~~~~d------~~i~i~d~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~ 287 (341)
++++.+.|+.+ ..+..||..+ . +.+..+........ +..-+++..++|+.+| .+..||..+.+-.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~----~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH----TILHDNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce----eEEECCEEEEEeeecceeehhhcCccccccc
Confidence 34445555543 2467888775 2 33334432222211 1223677888998888 6777887766544
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.048 Score=42.64 Aligned_cols=166 Identities=14% Similarity=0.155 Sum_probs=101.6
Q ss_pred cCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeeccc-CccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC
Q psy17863 52 GGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREH-ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 130 (341)
Q Consensus 52 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 130 (341)
.+-...+.++.|+|+.+.|++......-.++=-.+|+.++++.-. -.....+.+..++++.++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 344556999999999999999888888888877889988877531 2334567888888888888788888888776543
Q ss_pred CcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEe-eecCceEEEEEECCCCceEEEeCC-CceEEEEccccc--
Q psy17863 131 HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH-SVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY-- 206 (341)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~-- 206 (341)
. +. ++... ...+.. .........++|.|..+.+..+-+ +-+.+|......
T Consensus 162 ~----------------------~~--~~~~~--~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~ 215 (316)
T COG3204 162 T----------------------VI--SAKVQ--KIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS 215 (316)
T ss_pred c----------------------EE--eccce--EEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc
Confidence 1 10 00010 000100 011334677888887777666654 445555544322
Q ss_pred ---------------CCCCeEEEEEcc-CCCEEEEeecCCeEEEEeccccceee
Q psy17863 207 ---------------GQEPIVDACFTR-DCQCILTCSTDECLRLFDKATGELLE 244 (341)
Q Consensus 207 ---------------~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~ 244 (341)
.-..+..+.|.+ .+.+++.+.+++.+.-.|.. |+.+.
T Consensus 216 l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~ 268 (316)
T COG3204 216 LSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIE 268 (316)
T ss_pred cccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeee
Confidence 012345566665 35556666666666666654 44333
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.13 Score=46.96 Aligned_cols=111 Identities=12% Similarity=0.039 Sum_probs=67.2
Q ss_pred cEEEEEEccCCCEEEEEeC-----CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCC------CcEEEEE
Q psy17863 15 AIRAVRFNVDGSYCLTCGS-----DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD------KSVILWE 83 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~ 83 (341)
.+..+.++|||++|+.+.. ...|++-|+.+++.+...-.... ..++|.+|++.|+....+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4777889999998886533 34688999988764322211211 458999999877665432 3678888
Q ss_pred CCCC--ceeeeecccCccEE-EEEEcCCCcEEEEecC---CCeEEEEEec
Q psy17863 84 VTTG--QPVRRWREHASKVT-CVKFNEDSSVVISGSQ---DNTVMMWDVK 127 (341)
Q Consensus 84 ~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---d~~i~iwd~~ 127 (341)
+.++ +....+........ .+..+.++++++..+. ++.+.+++..
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 8877 33333443223233 3333447776654433 3467777743
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.043 Score=41.34 Aligned_cols=130 Identities=13% Similarity=0.133 Sum_probs=81.5
Q ss_pred CceEEEEEECCCCceEEEeCC----------CceEEEEccccc-----CCCCeEEEEEccCCCEEE-EeecCCeEEEEe-
Q psy17863 174 KAVVNSLCSHPTRKHIMSACG----------NNVKLWTAEEDY-----GQEPIVDACFTRDCQCIL-TCSTDECLRLFD- 236 (341)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~----------~~i~~~~~~~~~-----~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d- 236 (341)
+...+.-..+|+|++....-. +.++.|-..... .-.--+.++|+.+.+.+. +-+.+-.|.-||
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 345667778899998654421 234444433211 111224567777766554 555666787777
Q ss_pred -ccccce-----eeeecCc---ccc-eeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcC
Q psy17863 237 -KATGEL-----LEEYKGH---KSG-DFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 306 (341)
Q Consensus 237 -~~~~~~-----~~~~~~~---~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 306 (341)
..+|.. +..++.. ... .-.+ +++.+|++.++.-..|+|...|..+|+.+..+. -....|++++|--
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm--~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik--lPt~qitsccFgG 263 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGM--TIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK--LPTPQITSCCFGG 263 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcc--eEccCCcEEEEEecCcEEEEECCCCCcEEEEEE--cCCCceEEEEecC
Confidence 555532 2222211 111 1122 567788888888889999999999999999998 5578899999964
Q ss_pred C
Q psy17863 307 T 307 (341)
Q Consensus 307 ~ 307 (341)
.
T Consensus 264 k 264 (310)
T KOG4499|consen 264 K 264 (310)
T ss_pred C
Confidence 3
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.057 Score=42.01 Aligned_cols=124 Identities=10% Similarity=0.069 Sum_probs=77.4
Q ss_pred ceeeeEEeeeC-CcEEEEEEccCCCEEEEEeCCC--eEEEEcCCCcceeeEecCcc-cceeEEEEecCCCEEEEecCCCc
Q psy17863 3 YTCVQTIDCKQ-GAIRAVRFNVDGSYCLTCGSDK--KIKLWNPYRNLLLKTYGGHA-HEVNDATAACDSSQIASGASDKS 78 (341)
Q Consensus 3 ~~~~~~l~~h~-~~v~~~~~~~~~~~l~t~~~dg--~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~ 78 (341)
++.++++.... .-...+.|..+|.++-+.+.-| .|+.+|+.+++......-.. ---..++.. +++...-.-.++.
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSE
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCe
Confidence 45556655222 3345688878888888877766 79999999998776554221 112233333 3344445567899
Q ss_pred EEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC
Q psy17863 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 130 (341)
Q Consensus 79 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 130 (341)
..+||..+-+.+.++.- .+.=+.++ .+++.|+.......+.++|.++.+
T Consensus 112 ~f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp EEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred EEEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccc
Confidence 99999999888888764 34556777 356677777667789999977654
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.064 Score=41.75 Aligned_cols=172 Identities=13% Similarity=0.172 Sum_probs=99.2
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC------CceEEEEccccc--------CCCCeEEEEEccCC
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG------NNVKLWTAEEDY--------GQEPIVDACFTRDC 220 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~--------~~~~i~~~~~~~~~ 220 (341)
.++|.........+.........-.=.|+|+|.+|.++.+ +.|-+||..... +.-....+.+.+||
T Consensus 94 ~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DG 173 (366)
T COG3490 94 MVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADG 173 (366)
T ss_pred EEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCC
Confidence 4555555555555444333333444578999999998763 568999988644 44455778999999
Q ss_pred CEEEEeec------------------CCeEEEEeccccceeeeec----CcccceeEEEEEeCCCCCEEEEecCCCc---
Q psy17863 221 QCILTCST------------------DECLRLFDKATGELLEEYK----GHKSGDFRIECCLDSKDSQIFCGSSDGK--- 275 (341)
Q Consensus 221 ~~l~~~~~------------------d~~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~dg~--- 275 (341)
+.++.+.. .-.+.+.|..+|+++.+.. .+...+..+ +..+||..++.+-..|.
T Consensus 174 rtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl--d~g~dgtvwfgcQy~G~~~d 251 (366)
T COG3490 174 RTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL--DIGRDGTVWFGCQYRGPRND 251 (366)
T ss_pred cEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee--eeCCCCcEEEEEEeeCCCcc
Confidence 99887643 1234445545555543322 122233333 66677655554432221
Q ss_pred --EEEEeeeCCCceEEEEee-----eeccceEEEEEcCCCcEEEEeC--CCcEEEEEccccc
Q psy17863 276 --IYKWQLVDSSQISTLIHS-----VGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY 328 (341)
Q Consensus 276 --i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~~~ 328 (341)
-.+=-...++++.-+... .....|-+++.+.+..+++..+ .+...+||..++.
T Consensus 252 ~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 252 LPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred CCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence 111122334444443311 1234677888887777777666 5678899998875
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.067 Score=41.85 Aligned_cols=255 Identities=8% Similarity=-0.022 Sum_probs=136.2
Q ss_pred cceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecc--cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcC
Q psy17863 56 HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE--HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP 133 (341)
Q Consensus 56 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 133 (341)
..+..+.++ +++...+..+.-++|.|+.+......... ..+--.++.. .|++...+..|.-+.+.|+.+.+...
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 445566665 55777777777799999987654333322 1133344444 47888888877778899998876544
Q ss_pred eEEeecC----------CCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcc
Q psy17863 134 IQCCLDS----------KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 203 (341)
Q Consensus 134 ~~~~~~~----------~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 203 (341)
+...... .+++...+..++-+.+.|+........+........+.++..+++..+++....+ +.+-|..
T Consensus 163 lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg-vlivd~s 241 (370)
T COG5276 163 LAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG-VLIVDVS 241 (370)
T ss_pred eeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc-eEEEecC
Confidence 3322221 2335566678889999999876655544433333367888888887777665443 3333333
Q ss_pred ccc-----------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccce---eeeecCcccceeEEEEEeCCCCCEEEE
Q psy17863 204 EDY-----------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL---LEEYKGHKSGDFRIECCLDSKDSQIFC 269 (341)
Q Consensus 204 ~~~-----------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~ 269 (341)
... ....++ .+.-.+++......+.-+.+-|.++... ...+......-..+ ..-+.++..
T Consensus 242 ~~ssp~~~gsyet~~p~~~s--~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi----~ay~~y~yi 315 (370)
T COG5276 242 GPSSPTVFGSYETSNPVSIS--TVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGI----RAYGNYNYI 315 (370)
T ss_pred CCCCceEeeccccCCccccc--ceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccce----EEecCeeEe
Confidence 322 222222 2233344455555555556666553321 11111111011111 112334444
Q ss_pred ecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEc
Q psy17863 270 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 270 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~ 324 (341)
+..+ ...+-+....+...... +....+.+...+-+.+.+.+.. ++.+.+|+.
T Consensus 316 adkn-~g~vV~~s~~s~m~~~~--g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 316 ADKN-TGAVVDASPPSMMDKRP--GRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred ccCC-ceEEEeCCChhhccccc--CcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 4433 33344443333222222 2223344444445566777777 888999874
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.024 Score=49.93 Aligned_cols=114 Identities=10% Similarity=0.019 Sum_probs=77.3
Q ss_pred eEEEEEccCCCEEEEeecCCeEEEEeccccceeeeec-CcccceeEEEEEeCCCCCEEEEecCCCcEEEEeee-------
Q psy17863 211 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK-GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV------- 282 (341)
Q Consensus 211 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~------- 282 (341)
..-+.-+.-++..++-+....+.|||.+.+....+-. .....|..+.|...|+++.+++.+....|.++.-.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3334444455555555555679999998776433222 34677889999999999999999999999998531
Q ss_pred --CCCceEEEEeeeec-cceEEEEEcCCCcEEEEeCCCcEEEEEcc
Q psy17863 283 --DSSQISTLIHSVGK-AVVNSLCSHPTRKHIMSACGNNVKLWTAE 325 (341)
Q Consensus 283 --~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~d~~i~vw~~~ 325 (341)
+..++..+....+. .+|.+..|.++|.+++.+ ++.+.|++-.
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKW 156 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence 11234444322333 689999999998766555 6778888743
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.11 Score=42.96 Aligned_cols=254 Identities=10% Similarity=0.075 Sum_probs=103.1
Q ss_pred cCCCcceeeEecCcccc-----eeEEEEecCCCEEEEecC-C--CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEE
Q psy17863 41 NPYRNLLLKTYGGHAHE-----VNDATAACDSSQIASGAS-D--KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVV 112 (341)
Q Consensus 41 ~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~-d--g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 112 (341)
|..+|..+..+...... .+.=+|.+||+.|+.++. | ..+.+.|+.+++..+.-.+.........++|+.+.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 67778777777643332 233356778876655444 4 457777888887655444322223345667877877
Q ss_pred EEecCCCeEEEEEecCCCCcCeEEeecCCCceE----EEeeccCeEEEEEccCCcceeeeE---------eeecCceEEE
Q psy17863 113 ISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQI----FCGSSDGKIYKWQLVDSSQISTLI---------HSVGKAVVNS 179 (341)
Q Consensus 113 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~g~i~~~d~~~~~~~~~~~---------~~~~~~~~~~ 179 (341)
+-...+..|.-.|+++.+...+ ...++... .+...|++..+--....+....+. .......+..
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~v---y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVV---YEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEE---EE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred EEEECCCeEEEEECCcCcEEEE---EECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 6665567888888888763322 22222222 112233333221111100000000 0000011111
Q ss_pred EEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCe-----EEEEeccc-cceeeeecCcccce
Q psy17863 180 LCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDEC-----LRLFDKAT-GELLEEYKGHKSGD 253 (341)
Q Consensus 180 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-----i~i~d~~~-~~~~~~~~~~~~~~ 253 (341)
+.... +..++.-- ....+..+.|+|...-+++=+.+|- -|+|-+++ +...+.+..+....
T Consensus 173 idl~t----------G~~~~v~~----~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e 238 (386)
T PF14583_consen 173 IDLKT----------GERKVVFE----DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGE 238 (386)
T ss_dssp EETTT------------EEEEEE----ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTE
T ss_pred EECCC----------CceeEEEe----cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCc
Confidence 21111 11110000 2345677889996555555443331 25554432 33334444343333
Q ss_pred eEEEEEeCCCCCEEEE-----ecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC
Q psy17863 254 FRIECCLDSKDSQIFC-----GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 254 ~~~~~~~~~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
.+-.=-|.+||..|.- ++.+..|.-+|..+++...... ......+.-++||++++-=+
T Consensus 239 ~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG 301 (386)
T PF14583_consen 239 SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDG 301 (386)
T ss_dssp EEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE
T ss_pred ccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecC
Confidence 3332358899987653 3345567778888776543322 22455677789998876544
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.084 Score=41.35 Aligned_cols=120 Identities=8% Similarity=0.093 Sum_probs=88.7
Q ss_pred eeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecC-cccceeEEEEecCCCEEEEecCCCcEEEEECCCCc
Q psy17863 10 DCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG-HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 88 (341)
Q Consensus 10 ~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 88 (341)
.+-...|.++.|+|+.+.|++......-.|+=..+|+.+.++.- .-.....+.+..++++.++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 34455699999999999999888888888887778998888752 12234557787788877777778888888876653
Q ss_pred eeee----------ecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCC
Q psy17863 89 PVRR----------WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR 129 (341)
Q Consensus 89 ~~~~----------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 129 (341)
.+.. ....+.....++|.|....|+.+-+-.-+.||.+...
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~ 212 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQS 212 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecC
Confidence 2211 1112566789999998888998888888888887743
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.15 Score=43.81 Aligned_cols=300 Identities=14% Similarity=0.159 Sum_probs=152.9
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcc-cceeEEEEecCCCEEEEecCCCcEEEEECCCCceee
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA-HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVR 91 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 91 (341)
..+|..+.+..+|. +..|+.|| +..||..+++.+..-.... .+|..+.-+-.+ .|.+|+.+| +.+.+.+..+...
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 45788888888885 55667676 7788888887766544333 566666655555 577788777 7777765422211
Q ss_pred eec-ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC-----------CcCeEEeecCCCceEEEeeccCeEEEEEc
Q psy17863 92 RWR-EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-----------HHPIQCCLDSKDSQIFCGSSDGKIYKWQL 159 (341)
Q Consensus 92 ~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~g~i~~~d~ 159 (341)
-.. -....|..+.-..+| .+-.|+.+|..+. ...... ...+.......++.+-+++.+|.+++-+.
T Consensus 240 ~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a 317 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQG-ELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTA 317 (671)
T ss_pred cCCCCcchheeeeecccCC-CEEEeecccceeE-ecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEEecc
Confidence 111 123344444433344 3555555553322 111111 11223334445566777777776665433
Q ss_pred cCCcceeeeEeeecCceE-----------EEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeec
Q psy17863 160 VDSSQISTLIHSVGKAVV-----------NSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCST 228 (341)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 228 (341)
.- .....+... ....+ ..+.+......+....+.+-.+|..........|+.+++..+|. +-.++.
T Consensus 318 ~w-~~ma~in~~-dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~-lWlgs~ 394 (671)
T COG3292 318 DW-KRMAVINDS-DGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGR-LWLGSM 394 (671)
T ss_pred hh-hheeeeecC-CCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCc-EEEEec
Confidence 21 111111110 00001 11111111112333333222233333333445677777777555 555555
Q ss_pred CCeEEEEeccc-cceeeeecCc-ccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEee---eeccceEEEE
Q psy17863 229 DECLRLFDKAT-GELLEEYKGH-KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS---VGKAVVNSLC 303 (341)
Q Consensus 229 d~~i~i~d~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~ 303 (341)
..-+..|+.++ +..+.+..+. .+++..+ .-.|+++ |..|+.+|-++. +.+.++....+... ...+.+..+.
T Consensus 395 q~GLsrl~n~n~~avlde~agl~ss~V~ai--ved~dns-LWIGTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg 470 (671)
T COG3292 395 QNGLSRLDNKNEWAVLDEDAGLPSSEVSAI--VEDPDNS-LWIGTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLG 470 (671)
T ss_pred ccchhhhccCCcccccccccCCcccceeee--eecCCCC-EEEeccCCeEec-CccccchhcccccccCcCCcchhhhhc
Confidence 54466677665 4444443332 3444444 6678877 888888887654 33333333333211 2234577888
Q ss_pred EcCCCcEEEEeCCCcEEEEEccc
Q psy17863 304 SHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 304 ~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
..|+|+.-+.+++| |..|+-..
T Consensus 471 ~~~~g~Lw~a~g~g-va~~~sq~ 492 (671)
T COG3292 471 LGPDGRLWLAAGSG-VAAWESQR 492 (671)
T ss_pred cCCCCceEEEecce-eeeecccc
Confidence 99999876665544 46665443
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.22 Score=45.76 Aligned_cols=143 Identities=15% Similarity=0.253 Sum_probs=83.6
Q ss_pred CCEEEEEeCCCeEEEEcCCCcceeeEecCccccee-------------EEEEec--CCCEEEEecC----------CCcE
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVN-------------DATAAC--DSSQIASGAS----------DKSV 79 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------dg~i 79 (341)
+..++.++.|+.+.-.|.++|+....+.. .+.|. .+.-.| .+..+++|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 44788888899999999999998877642 22110 111112 2345666642 6889
Q ss_pred EEEECCCCceeeeeccc---------Cc--------cE-EEEEEcCCCcEEEEecC------------------CCeEEE
Q psy17863 80 ILWEVTTGQPVRRWREH---------AS--------KV-TCVKFNEDSSVVISGSQ------------------DNTVMM 123 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~~---------~~--------~v-~~~~~~~~~~~l~~~~~------------------d~~i~i 123 (341)
+-+|.++|+.+..+..- .+ .+ ..+++.++..+++.+.. .+.|.-
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 99999999988766421 00 11 22344444444443221 234444
Q ss_pred EEecCCCC------------------cCeEEeecC-CC---ceEEEeeccCeEEEEEccCCcceeee
Q psy17863 124 WDVKSRSH------------------HPIQCCLDS-KD---SQIFCGSSDGKIYKWQLVDSSQISTL 168 (341)
Q Consensus 124 wd~~~~~~------------------~~~~~~~~~-~~---~~~~~~~~~g~i~~~d~~~~~~~~~~ 168 (341)
.|.++++. .++..-... .+ ..++.++.+|.++++|.++++.+...
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 55555441 111111111 22 27889999999999999998877654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.14 Score=41.42 Aligned_cols=208 Identities=13% Similarity=0.108 Sum_probs=111.2
Q ss_pred EEEccCCCE-EEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecc--
Q psy17863 19 VRFNVDGSY-CLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE-- 95 (341)
Q Consensus 19 ~~~~~~~~~-l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-- 95 (341)
..|.++... +.+--..+.|.-|+..+++. ..+. +...+.++..-..+..|+++. .| +.+++.+++..+..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~-~g-~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACE-HG-VRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEc-cc-cEEEeccCCceeEEecccc
Confidence 356676664 44545578899998876543 3333 233345554444444555543 33 66777766655332211
Q ss_pred ---cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeee
Q psy17863 96 ---HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV 172 (341)
Q Consensus 96 ---~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~ 172 (341)
.....+.....|+|.+-++.. .. ++..... .-.-|.++.++. .+........
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~-~~----~~~~~~~-----------------~~~~G~lyr~~p-~g~~~~l~~~-- 160 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDM-GY----FDLGKSE-----------------ERPTGSLYRVDP-DGGVVRLLDD-- 160 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCC-Cc----cccCccc-----------------cCCcceEEEEcC-CCCEEEeecC--
Confidence 123445667777776444332 22 2200100 001123444443 2222222211
Q ss_pred cCceEEEEEECCCCceEEEeCC--CceEEEEcccc--c------------CCCCeEEEEEccCCCEEEEeecCC-eEEEE
Q psy17863 173 GKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEED--Y------------GQEPIVDACFTRDCQCILTCSTDE-CLRLF 235 (341)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~--~------------~~~~i~~~~~~~~~~~l~~~~~d~-~i~i~ 235 (341)
+-...+.++|+|+++.+..+.. +.+.-|++... . ..+..-.++...+|.+.+++..+| .|.+|
T Consensus 161 ~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~ 240 (307)
T COG3386 161 DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRF 240 (307)
T ss_pred cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEE
Confidence 1234689999999998888775 56666665521 1 112223355556777765554444 89999
Q ss_pred eccccceeeeecCcccceeEE
Q psy17863 236 DKATGELLEEYKGHKSGDFRI 256 (341)
Q Consensus 236 d~~~~~~~~~~~~~~~~~~~~ 256 (341)
+.. ++++..+..+...++++
T Consensus 241 ~pd-G~l~~~i~lP~~~~t~~ 260 (307)
T COG3386 241 NPD-GKLLGEIKLPVKRPTNP 260 (307)
T ss_pred CCC-CcEEEEEECCCCCCccc
Confidence 988 88888887765555555
|
|
| >KOG1898|consensus | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.31 Score=45.15 Aligned_cols=99 Identities=10% Similarity=0.089 Sum_probs=60.7
Q ss_pred CEEEEEeCCCeEEEEcCCCcceeeEe---cCcccceeEEEEecCC------CEEEEecCCCcEEEEECCCCceeeeec--
Q psy17863 26 SYCLTCGSDKKIKLWNPYRNLLLKTY---GGHAHEVNDATAACDS------SQIASGASDKSVILWEVTTGQPVRRWR-- 94 (341)
Q Consensus 26 ~~l~t~~~dg~i~iw~~~~~~~~~~~---~~~~~~v~~~~~~~~~------~~l~~~~~dg~i~iw~~~~~~~~~~~~-- 94 (341)
+.++.+-+.|.+..+.......+.++ ..-...+.|+++.++. ++++.++.|+++++..+....++..+.
T Consensus 550 ~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q 629 (1205)
T KOG1898|consen 550 RQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQ 629 (1205)
T ss_pred eEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcccc
Confidence 34555555666666654333333333 2345678899988764 579999999999999998766666553
Q ss_pred ccCccEEEEEEcC---CC------cEEEEecCCCeEEEE
Q psy17863 95 EHASKVTCVKFNE---DS------SVVISGSQDNTVMMW 124 (341)
Q Consensus 95 ~~~~~v~~~~~~~---~~------~~l~~~~~d~~i~iw 124 (341)
+-..++.++.+-+ ++ -+|.+|-.+|.+.-+
T Consensus 630 ~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 630 GLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred ccCCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence 3344444444432 22 256677777766544
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.25 Score=42.75 Aligned_cols=115 Identities=11% Similarity=0.194 Sum_probs=72.0
Q ss_pred CcEEEEEEccC----CCEEEEEeCCCeEEEEcCC-----CcceeeEecCcc---c--ceeEEEEecCCCEEEEecCCCcE
Q psy17863 14 GAIRAVRFNVD----GSYCLTCGSDKKIKLWNPY-----RNLLLKTYGGHA---H--EVNDATAACDSSQIASGASDKSV 79 (341)
Q Consensus 14 ~~v~~~~~~~~----~~~l~t~~~dg~i~iw~~~-----~~~~~~~~~~~~---~--~v~~~~~~~~~~~l~~~~~dg~i 79 (341)
..|..+.|.|- -..|++......|.||.+. +++.+..-..+- - --..+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 46889999985 3345555668899999864 233332221111 1 12456899998888776665544
Q ss_pred EEEECCCC--ceeeeecccCccEEEEEEcCCCcEEEEec-CCCeEEEEEecCC
Q psy17863 80 ILWEVTTG--QPVRRWREHASKVTCVKFNEDSSVVISGS-QDNTVMMWDVKSR 129 (341)
Q Consensus 80 ~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~ 129 (341)
.++++... +....++ ..+.|.|.+|.+||++|+.+- ..=.-++||-...
T Consensus 137 V~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 55665433 3333343 567899999999999887654 3335578885543
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.17 Score=40.72 Aligned_cols=145 Identities=10% Similarity=0.081 Sum_probs=79.7
Q ss_pred ceEEEEEECCCCceEEEeCCCceE-EEEccc-------ccCCCCeEEEEEccCCCEEEEeecCCeEEEEe-ccccceeee
Q psy17863 175 AVVNSLCSHPTRKHIMSACGNNVK-LWTAEE-------DYGQEPIVDACFTRDCQCILTCSTDECLRLFD-KATGELLEE 245 (341)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d-~~~~~~~~~ 245 (341)
..+..+..++++++++++..+.+. -|+... ......|..+.|.|++.+.+++ ..|.|+.=+ ....+...+
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~ 223 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSE 223 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE--
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccccc
Confidence 557788889999999999876654 455433 2357889999999998866654 888888877 222222221
Q ss_pred --ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEe-eeeccceEEEEEcCCCcEEEEeCCCcEEEE
Q psy17863 246 --YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH-SVGKAVVNSLCSHPTRKHIMSACGNNVKLW 322 (341)
Q Consensus 246 --~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw 322 (341)
..........+.+++.+++...++|+ .|.+. .....|+.-.+.+. ..-...+..+.|.++.+-++.|.+|.|.-|
T Consensus 224 ~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 224 PIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp -B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred ccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 11112333345558888876666655 45443 34456666555541 122446888899888888888888877544
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.31 Score=43.34 Aligned_cols=64 Identities=11% Similarity=0.124 Sum_probs=32.8
Q ss_pred CCCEEEEEeCCC------eEEEEcCCCcceeeEecCcc-cceeEEEEecCCCEEEEecCC-----CcEEEEECCCCc
Q psy17863 24 DGSYCLTCGSDK------KIKLWNPYRNLLLKTYGGHA-HEVNDATAACDSSQIASGASD-----KSVILWEVTTGQ 88 (341)
Q Consensus 24 ~~~~l~t~~~dg------~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~ 88 (341)
++..++.||.++ .+..||..+.+... +.... .........-+++.++.|+.+ ..+..||..+++
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 455666666532 56778877655422 21111 111111112266777777765 346677776654
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.22 Score=41.07 Aligned_cols=104 Identities=13% Similarity=0.154 Sum_probs=57.9
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcce---eeEe----cCcccceeEEEEecC---CCEEEE-ecCC-------
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLL---LKTY----GGHAHEVNDATAACD---SSQIAS-GASD------- 76 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~l~~-~~~d------- 76 (341)
.-+.|+|.|||+++++ ...|.|++++ .++.. +..+ .........++++|+ ..+|.. .+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999987665 6699999999 33333 2222 234457889999994 233333 3311
Q ss_pred -CcEEEEECCCC-------ce-eeeecc---cCccEEEEEEcCCCcEEEEecCCCe
Q psy17863 77 -KSVILWEVTTG-------QP-VRRWRE---HASKVTCVKFNEDSSVVISGSQDNT 120 (341)
Q Consensus 77 -g~i~iw~~~~~-------~~-~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~ 120 (341)
..|.-|....+ +. +..+.. ....-..|.|.||+.+.++.+..+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 23444544433 11 111121 2334567999999987777765543
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.24 Score=42.68 Aligned_cols=257 Identities=14% Similarity=0.135 Sum_probs=135.8
Q ss_pred cceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccC-ccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC----
Q psy17863 56 HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHA-SKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS---- 130 (341)
Q Consensus 56 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---- 130 (341)
.+|..+.+..+| .+.+|+.|| +..||..+++.++.-.... .+|..+..+-++ .|..|+.+| +.+.+.+...
T Consensus 165 ~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn~ 240 (671)
T COG3292 165 TPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASNW 240 (671)
T ss_pred ccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhcccccc
Confidence 456777777666 567788888 7778888877766544333 556555555555 466666555 6666655421
Q ss_pred -----CcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccc-
Q psy17863 131 -----HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE- 204 (341)
Q Consensus 131 -----~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 204 (341)
...+..+.....+.+-.|+..|..+.--.+.+-.......+...+.+.++....+|..-+...++.+++-+.+-
T Consensus 241 ~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~ 320 (671)
T COG3292 241 GPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWK 320 (671)
T ss_pred CCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEEecchhh
Confidence 12233334444556777777766554433333333444444455677888888888888777776665544321
Q ss_pred ------ccCCCCeEEEEEcc--CCCEEEEeecCCeEEEEeccccceeeeecC-cccceeEEEEEeCCCCCEEEEecCCCc
Q psy17863 205 ------DYGQEPIVDACFTR--DCQCILTCSTDECLRLFDKATGELLEEYKG-HKSGDFRIECCLDSKDSQIFCGSSDGK 275 (341)
Q Consensus 205 ------~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~ 275 (341)
......+...+..| .+..+--...-|.+.+-+-.++..+..... ....++.. ++.. +..+..|+...-
T Consensus 321 ~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~--~~d~-~g~lWlgs~q~G 397 (671)
T COG3292 321 RMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTT--LEDS-RGRLWLGSMQNG 397 (671)
T ss_pred heeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchh--hhcc-CCcEEEEecccc
Confidence 00011111111111 111122222233444445555555443221 12233333 4444 345666666644
Q ss_pred EEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEE
Q psy17863 276 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVK 320 (341)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~ 320 (341)
+..|+.++.............++|..+.=.|+++ |..++ +|-++
T Consensus 398 Lsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 398 LSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred hhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEe
Confidence 5566655511222222223456788888889988 55555 77554
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.084 Score=46.74 Aligned_cols=119 Identities=13% Similarity=0.212 Sum_probs=77.0
Q ss_pred eEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec-CcccceeEEEEe--cCCCEEEEecCCCcEEEEE
Q psy17863 7 QTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-GHAHEVNDATAA--CDSSQIASGASDKSVILWE 83 (341)
Q Consensus 7 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iw~ 83 (341)
.++..--...+-+.-|.-++..++-+....+.|||...+....+-. ...+.|.++.|. |+++.+++.+..+.|.+|.
T Consensus 23 ~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 23 STFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3444444455555555555544454455689999998776443322 357789999995 5888888888889999986
Q ss_pred CCC-----C----ceeeee--cccC-ccEEEEEEcCCCcEEEEecCCCeEEEEEec
Q psy17863 84 VTT-----G----QPVRRW--REHA-SKVTCVKFNEDSSVVISGSQDNTVMMWDVK 127 (341)
Q Consensus 84 ~~~-----~----~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 127 (341)
-.. . .+++.+ ..++ .+|.+..|.++|.+++.++ +.+.++|-.
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 421 1 223322 2333 6789999999997666554 577777643
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.37 Score=41.32 Aligned_cols=247 Identities=11% Similarity=0.101 Sum_probs=111.2
Q ss_pred ceeEEEEecCCCEEEEe-cCC----CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC
Q psy17863 57 EVNDATAACDSSQIASG-ASD----KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH 131 (341)
Q Consensus 57 ~v~~~~~~~~~~~l~~~-~~d----g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 131 (341)
.+....++|++++++.+ +.. ..++++|+++++.+...-. ......+.|.++++.|+....+..- .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~--------~- 194 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQ--------R- 194 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTT--------S-
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCccc--------c-
Confidence 34467889999998854 223 4599999999977653211 1122339999998877665433210 0
Q ss_pred cCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEe-eecCce-EEEEEECCCCceEEEeC----C-CceEEEEccc
Q psy17863 132 HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH-SVGKAV-VNSLCSHPTRKHIMSAC----G-NNVKLWTAEE 204 (341)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~----~-~~i~~~~~~~ 204 (341)
.. .......|+.|.+.+......+.. ...... ...+..++++++++... . ..+.+.+...
T Consensus 195 ~~-------------~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 195 TS-------------DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp S--------------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred cc-------------cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 00 000112233333333222211111 111111 44566666766665432 1 2355555544
Q ss_pred cc-----------CCCCeEEEEEccCCCEEEEee---cCCeEEEEeccccce---eeeecCcccceeEEEEEeCCCCCEE
Q psy17863 205 DY-----------GQEPIVDACFTRDCQCILTCS---TDECLRLFDKATGEL---LEEYKGHKSGDFRIECCLDSKDSQI 267 (341)
Q Consensus 205 ~~-----------~~~~i~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l 267 (341)
.. ....+....-..++.+++... .++.|...++.+... ...+..+...+....+... .+.++
T Consensus 262 ~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~Lv 340 (414)
T PF02897_consen 262 GGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-KDYLV 340 (414)
T ss_dssp TTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-TTEEE
T ss_pred cCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-CCEEE
Confidence 30 111122222222333333322 234566666665442 2244444443322222322 22344
Q ss_pred EEecCCC--cEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEE--EeC---CCcEEEEEccccc
Q psy17863 268 FCGSSDG--KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM--SAC---GNNVKLWTAEEDY 328 (341)
Q Consensus 268 ~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~---d~~i~vw~~~~~~ 328 (341)
+....++ .|+++++..+.....+.. ...+.|..+...+++..+. ..+ -+++.-||+.++.
T Consensus 341 l~~~~~~~~~l~v~~~~~~~~~~~~~~-p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 341 LSYRENGSSRLRVYDLDDGKESREIPL-PEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEEETTEEEEEEEETT-TEEEEEEES-SSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEEEECCccEEEEEECCCCcEEeeecC-CcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 4444444 578888763444444442 2334456665555554332 222 4567777777654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.53 Score=42.03 Aligned_cols=186 Identities=14% Similarity=0.173 Sum_probs=91.8
Q ss_pred CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeee----cccCccEEEEEEcCCCc
Q psy17863 35 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW----REHASKVTCVKFNEDSS 110 (341)
Q Consensus 35 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~~~v~~~~~~~~~~ 110 (341)
..|+||+. +|.++.++....+.+..+.|+.+. .|++...+|++++|++- |+.+... ......|..+.+..+|-
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCce
Confidence 45888885 567776665555588899999655 56666899999999974 3333331 22233455555555553
Q ss_pred EEEEecCCCeEEEE-EecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEEC-CCCce
Q psy17863 111 VVISGSQDNTVMMW-DVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH-PTRKH 188 (341)
Q Consensus 111 ~l~~~~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 188 (341)
.+.+ .+|.+.+- +..... .......+.+.+-. ..|.+......... -+... +.+..
T Consensus 141 avlt--~~g~v~~i~~~~~~~---~~~~~diP~~~~~~-------~~Wt~~~~~~~~~~----------ll~v~~~v~~~ 198 (829)
T KOG2280|consen 141 AVLT--VSGQVILINGVEEPK---LRKMPDIPYNELPK-------SCWTVFQPHRQSTI----------LLDVDVAVGLH 198 (829)
T ss_pred EEEe--cCCcEEEEcCCCcch---hhhCCCCCCccCCC-------cceeEecCCCccee----------EEeechhhhhc
Confidence 3333 33444332 222211 00000000000000 01111110000000 00000 01111
Q ss_pred EEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeec
Q psy17863 189 IMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK 247 (341)
Q Consensus 189 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 247 (341)
+.-.....+..-.+.. ....+..+.+||+.++|+.-...|.|.+-+.+..+.+.++.
T Consensus 199 ~~q~~~~~~q~~~~~~--~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 199 ICQVEESRVQLHALSW--PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ccceecccccccccCC--CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 1111000000000000 13567889999999999999999999999988777766665
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.53 Score=41.19 Aligned_cols=63 Identities=13% Similarity=0.022 Sum_probs=33.4
Q ss_pred CCCEEEEEeCCC-----eEEEEcCCCcceeeE--ecCcccceeEEEEecCCCEEEEecCC--CcEEEEECCCCc
Q psy17863 24 DGSYCLTCGSDK-----KIKLWNPYRNLLLKT--YGGHAHEVNDATAACDSSQIASGASD--KSVILWEVTTGQ 88 (341)
Q Consensus 24 ~~~~l~t~~~dg-----~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~ 88 (341)
++..++.||.++ .+..||+.+++.... +....... +++ .-++...+.|+.+ ..+..||..+++
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~ 342 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAA 342 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCe
Confidence 455667777543 577788776543221 21111111 222 2367777777754 357777765543
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.13 Score=44.37 Aligned_cols=151 Identities=9% Similarity=0.107 Sum_probs=87.7
Q ss_pred eEEEEEECCCCceEEEeC---CCceEEEEcccccCCCCeEEEEEccC----CCEEEEeecCCeEEEEeccc-----ccee
Q psy17863 176 VVNSLCSHPTRKHIMSAC---GNNVKLWTAEEDYGQEPIVDACFTRD----CQCILTCSTDECLRLFDKAT-----GELL 243 (341)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~d~~i~i~d~~~-----~~~~ 243 (341)
++..++|....+.+++.- ++..++=|...-..-..+..+.|.|- ...+++.-....|.+|.+.. .+.+
T Consensus 21 PvhGlaWTDGkqVvLT~L~l~~gE~kfGds~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l 100 (671)
T PF15390_consen 21 PVHGLAWTDGKQVVLTDLQLHNGEPKFGDSKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLL 100 (671)
T ss_pred cccceEecCCCEEEEEeeeeeCCccccCCccEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccce
Confidence 466677765555444432 23333322222223456788889884 33566666778899998652 2222
Q ss_pred eeecC---cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCc--
Q psy17863 244 EEYKG---HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN-- 318 (341)
Q Consensus 244 ~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~-- 318 (341)
..-.. ..-++..--|.|+|....|+.-.....-.++++......-+... ...+.|.|.+|.+||+.|+++-+..
T Consensus 101 ~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLH 179 (671)
T PF15390_consen 101 MSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLH 179 (671)
T ss_pred eeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEE
Confidence 11111 11222333457999988887766555555666655443333322 4567899999999999988876334
Q ss_pred EEEEEcccc
Q psy17863 319 VKLWTAEED 327 (341)
Q Consensus 319 i~vw~~~~~ 327 (341)
-++||-...
T Consensus 180 SyiWd~~qK 188 (671)
T PF15390_consen 180 SYIWDSAQK 188 (671)
T ss_pred EEEecCchh
Confidence 567875443
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.45 Score=42.35 Aligned_cols=63 Identities=6% Similarity=0.039 Sum_probs=32.4
Q ss_pred CCCEEEEecCC--------CcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-C-----CcEEEEEcccc
Q psy17863 263 KDSQIFCGSSD--------GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G-----NNVKLWTAEED 327 (341)
Q Consensus 263 ~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~vw~~~~~ 327 (341)
++...+.|+.+ ..+.+||..+.+....-...........+. .++++++.|+ + ..+.+||+.+.
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 45666666643 237888877654322111001111112222 2677777777 4 35778887654
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.34 Score=38.11 Aligned_cols=258 Identities=8% Similarity=0.010 Sum_probs=125.6
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecC--cccceeEEEEecCCCEEEEecCCCcEEEEECCCCc---e
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG--HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ---P 89 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~ 89 (341)
.+..+.++ +++...+..+.-++|.|+.+......+.. -.+--.++.. .|++..++..|.-+.+.|+.+.. .
T Consensus 88 l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 88 LFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCcee
Confidence 34455554 34556666666799999877654333221 1123334443 58888888756558888987653 3
Q ss_pred eeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEee---------cCCCceEEEeeccCeEEEEEcc
Q psy17863 90 VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCL---------DSKDSQIFCGSSDGKIYKWQLV 160 (341)
Q Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------~~~~~~~~~~~~~g~i~~~d~~ 160 (341)
...+.........++.+ |++-..+..|+-+.+-|+............ ...+++....-.+--+.+-|..
T Consensus 164 agrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s 241 (370)
T COG5276 164 AGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVS 241 (370)
T ss_pred eeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEEecC
Confidence 33444444555677776 667788889999999999886643322211 1222233333333344555666
Q ss_pred CCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccccCCCCeEEEEEcc--------CCCEEEEeecCCe
Q psy17863 161 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQEPIVDACFTR--------DCQCILTCSTDEC 231 (341)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~i~~~~~~~--------~~~~l~~~~~d~~ 231 (341)
..+....+-......+...-.+.-.+++..... +..+.+-|.+......--.++.+.. -+.++..+..+ .
T Consensus 242 ~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay~~y~yiadkn-~ 320 (370)
T COG5276 242 GPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAYGNYNYIADKN-T 320 (370)
T ss_pred CCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEecCeeEeccCC-c
Confidence 555444443222222221112222333333332 3445555555443221111111111 12222222222 2
Q ss_pred EEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEee
Q psy17863 232 LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 281 (341)
Q Consensus 232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (341)
..+.+....+......+....+... +.+-+.+.+.+...++.+.+|+.
T Consensus 321 g~vV~~s~~s~m~~~~g~~ti~~s~--~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 321 GAVVDASPPSMMDKRPGRPTIGQSC--DVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred eEEEeCCChhhcccccCcceEeeec--ceEEEeeEEEEeecCCCEEEEEe
Confidence 2333333222222222222222222 33334557788888888888875
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.29 Score=44.02 Aligned_cols=103 Identities=8% Similarity=0.075 Sum_probs=66.6
Q ss_pred CCCEEEEeecCCeEEEEeccccc--------------------eeeeecCcccceeEEEEEeC--CCCCEEEEecCCCcE
Q psy17863 219 DCQCILTCSTDECLRLFDKATGE--------------------LLEEYKGHKSGDFRIECCLD--SKDSQIFCGSSDGKI 276 (341)
Q Consensus 219 ~~~~l~~~~~d~~i~i~d~~~~~--------------------~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i 276 (341)
+...|+++..||.|.+|..++-. +...+. .....+.+ ++. ...++||+++....|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGL--dIh~~~~~rlIAVSsNs~~V 189 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGL--DIHDYKKSRLIAVSSNSQEV 189 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEE--EEEecCcceEEEEecCCceE
Confidence 45678899999999999753210 111111 12234555 565 777889999888888
Q ss_pred EEEeeeCC-CceEEEEeeeeccceEEEEEcCCC------cEEEEeC-CCcEEEEEc
Q psy17863 277 YKWQLVDS-SQISTLIHSVGKAVVNSLCSHPTR------KHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 277 ~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~-d~~i~vw~~ 324 (341)
.||-.... +.........+...|.+++|-++. ..|++++ .|.+-+|++
T Consensus 190 TVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 190 TVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88876542 111111111356778899997754 2777788 999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.64 Score=41.54 Aligned_cols=95 Identities=17% Similarity=0.179 Sum_probs=50.5
Q ss_pred CCCEEEEEeCC------CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCc-----EEEEECCCCceee-
Q psy17863 24 DGSYCLTCGSD------KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKS-----VILWEVTTGQPVR- 91 (341)
Q Consensus 24 ~~~~l~t~~~d------g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iw~~~~~~~~~- 91 (341)
++...++||.| .++..||..+++-...-.-.......-.-.-+|...++|+.||. +-.||..+.+...
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc
Confidence 45678888888 36788888776633311111111111111226888889988864 6677776654322
Q ss_pred -eecccCccEEEEEEcCCCcEEEEecCCCe
Q psy17863 92 -RWREHASKVTCVKFNEDSSVVISGSQDNT 120 (341)
Q Consensus 92 -~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 120 (341)
.+.......-...+ +|...++||.++.
T Consensus 412 a~m~~~r~~~gv~~~--~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 412 APMLTRRSGHGVAVL--GGKLYIIGGGDGS 439 (571)
T ss_pred CCCCcceeeeEEEEE--CCEEEEEcCcCCC
Confidence 12111111111222 5777777776653
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.47 Score=37.46 Aligned_cols=144 Identities=11% Similarity=0.059 Sum_probs=88.8
Q ss_pred eEEEEEECCCCceEEEeC--CC--ceEEEEccccc----CCCCeEEEEEccCCCEEEEeecCCeEEEEe-cccccee-ee
Q psy17863 176 VVNSLCSHPTRKHIMSAC--GN--NVKLWTAEEDY----GQEPIVDACFTRDCQCILTCSTDECLRLFD-KATGELL-EE 245 (341)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~--~~--~i~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d-~~~~~~~-~~ 245 (341)
.+.+.+++++++.++... ++ .+.++...... ....+..-.|++++...+....+...+++. ..+++.. ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 578899999998877765 44 45554443322 334778889999988777777676667763 2333221 12
Q ss_pred ecCc--ccceeEEEEEeCCCCCEEEEec---CCCcEEEEeeeCCCc--eEEE----Ee-eeeccceEEEEEcCCCcEEEE
Q psy17863 246 YKGH--KSGDFRIECCLDSKDSQIFCGS---SDGKIYKWQLVDSSQ--ISTL----IH-SVGKAVVNSLCSHPTRKHIMS 313 (341)
Q Consensus 246 ~~~~--~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~--~~~~----~~-~~~~~~v~~~~~~~~~~~l~~ 313 (341)
.... ...|..+ .++|||..++.-. .++.|.+--+..... ...+ .. ......++++.|.+++.+++.
T Consensus 105 v~~~~~~~~I~~l--~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 105 VDWPGLRGRITAL--RVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred ecccccCCceEEE--EECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 2211 1156655 8999999877654 457787776542111 1111 10 023468999999999998888
Q ss_pred eC--CCcEEE
Q psy17863 314 AC--GNNVKL 321 (341)
Q Consensus 314 ~~--d~~i~v 321 (341)
+. ++.+..
T Consensus 183 ~~~~~~~~~~ 192 (253)
T PF10647_consen 183 GRSAGGPVVR 192 (253)
T ss_pred eCCCCCceeE
Confidence 87 444444
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.7 Score=39.18 Aligned_cols=286 Identities=12% Similarity=0.119 Sum_probs=136.2
Q ss_pred CCEEEEEeCCCeEEEEcCCCcc-----eeeEecCcccceeEEEEec-----CCCEEEEecCCCcEEEEECCC--Cc----
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNL-----LLKTYGGHAHEVNDATAAC-----DSSQIASGASDKSVILWEVTT--GQ---- 88 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~-----~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iw~~~~--~~---- 88 (341)
...+++|+..|.++||++.... .+-+. .-..+|..+..-+ +...||+ -.-..+.+|.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 4689999999999999986543 12222 2456777776532 2234444 4456688887732 11
Q ss_pred ---eeeeecccC--ccEEEEEEcC-----CCcEEEEecCCCeEEEEEecCCC--------CcCeEEeecCCCceEEEeec
Q psy17863 89 ---PVRRWREHA--SKVTCVKFNE-----DSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCLDSKDSQIFCGSS 150 (341)
Q Consensus 89 ---~~~~~~~~~--~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~~ 150 (341)
.+..+..|. .....++.-| ...++..-+.||.+.+++-+... ..|-.....+..+.+++++.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC
Confidence 112222232 1222333322 24678888999999999865422 11222333445557777777
Q ss_pred cCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCC
Q psy17863 151 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDE 230 (341)
Q Consensus 151 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 230 (341)
+..+..|....-............ ...-......-..-|.+.-+..--.|..+.++.....+++-+ ..
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~-----------~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er 262 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSG-----------TEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ER 262 (418)
T ss_pred ceeEEEecHHHhhhcccccccccc-----------ccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cc
Confidence 777777764321111000000000 000000000111223333222222333344433333333333 33
Q ss_pred eEEEEeccccceeeeecCcccceeEEE---E--EeCCCC-CEEEEecCCCcEEEEeeeCCCceEEEEeeeeccce--EEE
Q psy17863 231 CLRLFDKATGELLEEYKGHKSGDFRIE---C--CLDSKD-SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVV--NSL 302 (341)
Q Consensus 231 ~i~i~d~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v--~~~ 302 (341)
.+.+.+. +|......+ ......++. . ...++. ..++.++.++.+.||. +.+++.... ....+| .-.
T Consensus 263 ~Lf~l~~-~G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~--l~~~PVal~v~ 336 (418)
T PF14727_consen 263 SLFCLKD-NGSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQ--LPHVPVALSVA 336 (418)
T ss_pred eEEEEcC-CCeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecC--CCCCCEEEEec
Confidence 5666654 344322222 111112221 1 112221 2488899999999986 334444333 112222 222
Q ss_pred EEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 303 CSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 303 ~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
.|..-...|++-+ +|.+.+--+.++...
T Consensus 337 ~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~ 365 (418)
T PF14727_consen 337 NFNGLKGLIVSLSDEGQLSVSYLGTDPSL 365 (418)
T ss_pred ccCCCCceEEEEcCCCcEEEEEeCCCCcc
Confidence 2333344666666 999998888776433
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.027 Score=29.87 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=28.2
Q ss_pred cceEEEEEcCCC---cEEEEeC-CCcEEEEEcccccCCcc
Q psy17863 297 AVVNSLCSHPTR---KHIMSAC-GNNVKLWTAEEDYGQAG 332 (341)
Q Consensus 297 ~~v~~~~~~~~~---~~l~~~~-d~~i~vw~~~~~~~~~~ 332 (341)
+.+.++.|+|+. .+|+.+. -+.|.|+|+...+...+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f~~~Q 40 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNFMRRQ 40 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCccceE
Confidence 368999999854 4888888 89999999997654443
|
It contains a characteristic DLL sequence motif. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.25 Score=33.91 Aligned_cols=108 Identities=14% Similarity=0.158 Sum_probs=68.5
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEcCCCcc--------eeeEecCcccceeEEEEec-----CCCEEEEecCCCcEEEEE
Q psy17863 17 RAVRFNVDGSYCLTCGSDKKIKLWNPYRNL--------LLKTYGGHAHEVNDATAAC-----DSSQIASGASDKSVILWE 83 (341)
Q Consensus 17 ~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iw~ 83 (341)
..-.|......|+.++.-|+|.|+++.... .+..+. -...|++++-.+ +...|+.|+. ..+..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence 344576677789999999999999876432 334443 556778876544 3456777665 5599999
Q ss_pred CCCCceeeeecccCccEEEEEEcC----CCcEEEEecCCCeEEEEEecC
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFNE----DSSVVISGSQDNTVMMWDVKS 128 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~iwd~~~ 128 (341)
++....+..- .-.+.|.++.+-. ...+++ .+.+..|.-||.+.
T Consensus 80 V~~N~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~i-vGGncsi~Gfd~~G 126 (136)
T PF14781_consen 80 VENNSDLFYK-EVPDGVNAIVIGKLGDIPSPLVI-VGGNCSIQGFDYEG 126 (136)
T ss_pred cccCchhhhh-hCccceeEEEEEecCCCCCcEEE-ECceEEEEEeCCCC
Confidence 9887655432 2446677777632 233444 44455666666543
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.72 Score=38.17 Aligned_cols=146 Identities=12% Similarity=0.071 Sum_probs=89.5
Q ss_pred CceEEEEEECCCCceEEEeCCCceEE--------EEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeee
Q psy17863 174 KAVVNSLCSHPTRKHIMSACGNNVKL--------WTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEE 245 (341)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 245 (341)
...+..+.+.|++.+++++..+.+.. |..........++.+.+.++++.++++ ..|.+++=....+..-..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSK 250 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccc
Confidence 34678899999998888877765543 322223345678899999999877665 567665433344443222
Q ss_pred ecCc----ccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEe-eeeccceEEEEEcCCCcEEEEeCCCcEE
Q psy17863 246 YKGH----KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH-SVGKAVVNSLCSHPTRKHIMSACGNNVK 320 (341)
Q Consensus 246 ~~~~----~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~d~~i~ 320 (341)
...+ ...+..+ .+.+++..++ ++.+|.+. .....++....... ..-......+.|..+++.+++|..|.|.
T Consensus 251 ~~~~~~~~~~~l~~v--~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il 326 (334)
T PRK13684 251 PIIPEITNGYGYLDL--AYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLL 326 (334)
T ss_pred ccCCccccccceeeE--EEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEE
Confidence 2211 1223334 6777776555 44677665 34455555444431 1222467888888888888888789888
Q ss_pred EEEc
Q psy17863 321 LWTA 324 (341)
Q Consensus 321 vw~~ 324 (341)
-|+-
T Consensus 327 ~~~~ 330 (334)
T PRK13684 327 RYVG 330 (334)
T ss_pred EecC
Confidence 7764
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.15 Score=42.89 Aligned_cols=91 Identities=9% Similarity=0.138 Sum_probs=63.8
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccc-eeEEEEecC-C--------------
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE-VNDATAACD-S-------------- 67 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~-v~~~~~~~~-~-------------- 67 (341)
.+...|......+.+++.+|++++.|+...-|.|.++|+.++..++..++..+. +.-+..... .
T Consensus 298 ~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~ 377 (415)
T PF14655_consen 298 PMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSR 377 (415)
T ss_pred ceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCc
Confidence 445566667788999999999999888888899999999999888877765432 111111111 0
Q ss_pred --C-EEEEecCCCcEEEEECCCCceeeeec
Q psy17863 68 --S-QIASGASDKSVILWEVTTGQPVRRWR 94 (341)
Q Consensus 68 --~-~l~~~~~dg~i~iw~~~~~~~~~~~~ 94 (341)
. +++-+-.-|.|.||.++.|..+..+.
T Consensus 378 ~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 378 FALFLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ceEEEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 1 23345667889999998887766654
|
|
| >KOG2377|consensus | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.27 Score=41.17 Aligned_cols=132 Identities=14% Similarity=0.132 Sum_probs=79.7
Q ss_pred EEEEECCCCceEEEeCCCceEEEEccccc----------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeee--
Q psy17863 178 NSLCSHPTRKHIMSACGNNVKLWTAEEDY----------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEE-- 245 (341)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-- 245 (341)
+.+-+...++.+++...+...-|-..... ..++|.++.|++|.+.+++--.+..|.+++....+....
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 34445555555555555544444443322 456999999999999999999999999999743332221
Q ss_pred --ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC-CCceEEEEeeeeccceEEEEEcCCCcEEEEeC
Q psy17863 246 --YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD-SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 246 --~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
-+.....|. .++|+.+ .-+|.-+..| +-+|.... .+.++..+ .+...|.-..|.++.+.+.-++
T Consensus 106 ~~ck~k~~~Il--GF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVk--s~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 106 QECKTKNANIL--GFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVK--SHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHhccCcceeE--EEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhh--hcccCccEEEEccccceEeeec
Confidence 122223333 3466655 4455554443 56665543 23344444 6777888888998877554443
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.051 Score=28.84 Aligned_cols=31 Identities=13% Similarity=0.299 Sum_probs=26.3
Q ss_pred CcEEEEEEccCC---CEEEEEeCCCeEEEEcCCC
Q psy17863 14 GAIRAVRFNVDG---SYCLTCGSDKKIKLWNPYR 44 (341)
Q Consensus 14 ~~v~~~~~~~~~---~~l~t~~~dg~i~iw~~~~ 44 (341)
++|.++.|+|+. .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 578999999854 5888888889999999875
|
It contains a characteristic DLL sequence motif. |
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.49 Score=42.34 Aligned_cols=94 Identities=13% Similarity=0.199 Sum_probs=58.9
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeee
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 92 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 92 (341)
..-++++.-+|.|+-++.+..||+|++|+.......+... ...+-..+.|...| |+++..|..+.-|. ++|...+.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~-~dgvvqqq 89 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWK-EDGVVQQQ 89 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheee-ccCcchhh
Confidence 4567888889999999999999999999976544322221 22334456665444 66677778788887 45544444
Q ss_pred ecc---cCccEEEEEEcCCCc
Q psy17863 93 WRE---HASKVTCVKFNEDSS 110 (341)
Q Consensus 93 ~~~---~~~~v~~~~~~~~~~ 110 (341)
+.- ......++...|..+
T Consensus 90 fdyndqsekefss~~cdptaq 110 (1636)
T KOG3616|consen 90 FDYNDQSEKEFSSILCDPTAQ 110 (1636)
T ss_pred ccccchhhhhccceecCchhh
Confidence 321 223445555566433
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.27 Score=41.76 Aligned_cols=135 Identities=19% Similarity=0.315 Sum_probs=90.0
Q ss_pred CCCEEE-EecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCC--------cEEEEecCCCeEEEEEecCCC------
Q psy17863 66 DSSQIA-SGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDS--------SVVISGSQDNTVMMWDVKSRS------ 130 (341)
Q Consensus 66 ~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~~~~~d~~i~iwd~~~~~------ 130 (341)
+..+|+ .|.....++-.|++.|+.+..+..|..- -+.|.|+. +.|+ |-.+..|.-.|.+-..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeee
Confidence 444444 4555567888899999999998877664 46777732 2344 3345555555554322
Q ss_pred -------CcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcc
Q psy17863 131 -------HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 203 (341)
Q Consensus 131 -------~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 203 (341)
.....+......+++++++..|.|++||--..+....+... ...|..+....+|+++++++...+.+-|+.
T Consensus 555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~l--G~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGL--GDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCccc--ccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 12233444556779999999999999996544333333222 345888999999999999999988888876
Q ss_pred cc
Q psy17863 204 ED 205 (341)
Q Consensus 204 ~~ 205 (341)
..
T Consensus 633 ik 634 (776)
T COG5167 633 IK 634 (776)
T ss_pred cc
Confidence 43
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.77 E-value=1.6 Score=40.16 Aligned_cols=73 Identities=18% Similarity=0.183 Sum_probs=48.0
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC---------cce--e-eEe--------cCcccceeEEEEecC---CCE
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR---------NLL--L-KTY--------GGHAHEVNDATAACD---SSQ 69 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~---------~~~--~-~~~--------~~~~~~v~~~~~~~~---~~~ 69 (341)
.-.|..|.+||+|++||..|..|...+.=... ++. . +++ ..+...|..+.|+|. +..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 35789999999999999998776544432211 111 1 111 133456778888874 467
Q ss_pred EEEecCCCcEEEEECC
Q psy17863 70 IASGASDKSVILWEVT 85 (341)
Q Consensus 70 l~~~~~dg~i~iw~~~ 85 (341)
|++-..|+++++||+.
T Consensus 164 l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEEecCCEEEEEecC
Confidence 7777888888888874
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.5 Score=43.19 Aligned_cols=66 Identities=15% Similarity=0.150 Sum_probs=52.4
Q ss_pred ceEEEEEECCCCceEEEeCCCceEEEEcccc----------------------------cCCCCeEEEEEccC---CCEE
Q psy17863 175 AVVNSLCSHPTRKHIMSACGNNVKLWTAEED----------------------------YGQEPIVDACFTRD---CQCI 223 (341)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------------------------~~~~~i~~~~~~~~---~~~l 223 (341)
..|..+.++|+|.+++..+...+.+..+... .....|..+.|+|. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4689999999999999998877777665421 02346788999996 5789
Q ss_pred EEeecCCeEEEEecccc
Q psy17863 224 LTCSTDECLRLFDKATG 240 (341)
Q Consensus 224 ~~~~~d~~i~i~d~~~~ 240 (341)
++-+.|+++|+||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 99999999999998653
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.056 Score=41.39 Aligned_cols=66 Identities=15% Similarity=0.298 Sum_probs=51.0
Q ss_pred eCCCCCEEEEecCCCcEEEEeeeCCCceEEE------Eee------eeccceEEEEEcCCCcEEEEeCCCcEEEEEcc
Q psy17863 260 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTL------IHS------VGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 325 (341)
Q Consensus 260 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~------~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~ 325 (341)
+..+++++++-+.+|.+++||+.+++.+..- ... .....|..+.++.+|.-+++-++|..+.|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 4456889999999999999999988654432 110 24567899999999998888888888888765
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=95.72 E-value=1.5 Score=39.45 Aligned_cols=52 Identities=15% Similarity=0.278 Sum_probs=38.3
Q ss_pred CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC
Q psy17863 77 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 130 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 130 (341)
-.|+|+++ +|+.+..+.-....+-.+.|+.+. .|++...+|++.+|++-...
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEF 115 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhh
Confidence 45888885 577666654444478899999766 46677889999999986543
|
|
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.023 Score=51.11 Aligned_cols=115 Identities=12% Similarity=0.149 Sum_probs=70.7
Q ss_pred EeeeCCcEEEEEEcc-CCCEEEEEeCCCeEEEEcCC--CcceeeEe-----cCcccceeEEEEec---CCCEEEEecCCC
Q psy17863 9 IDCKQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPY--RNLLLKTY-----GGHAHEVNDATAAC---DSSQIASGASDK 77 (341)
Q Consensus 9 l~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~--~~~~~~~~-----~~~~~~v~~~~~~~---~~~~l~~~~~dg 77 (341)
+++..+.|-.++|.. +-..++ -.-|.+.||++. .|+....+ ......+.-+.|.| +.-++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 456677888888843 222222 234678889864 34433332 22233445556655 566777888889
Q ss_pred cEEEEECCCCceeeeecccCccEEEEEE-----------cCCCcEEEEecCCCeEEEEEe
Q psy17863 78 SVILWEVTTGQPVRRWREHASKVTCVKF-----------NEDSSVVISGSQDNTVMMWDV 126 (341)
Q Consensus 78 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~-----------~~~~~~l~~~~~d~~i~iwd~ 126 (341)
++++.++.+... ..+.+|...+..++| +|||..++.++.||.++.|.+
T Consensus 206 ~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 206 EIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred ceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 999888765432 444557766666554 667777777777777777764
|
|
| >KOG1898|consensus | Back alignment and domain information |
|---|
Probab=95.64 E-value=1.9 Score=40.31 Aligned_cols=70 Identities=7% Similarity=0.102 Sum_probs=46.6
Q ss_pred CCcEEEEEEccCC------CEEEEEeCCCeEEEEcCCCcceeeEec--CcccceeEEEEec---CC------CEEEEecC
Q psy17863 13 QGAIRAVRFNVDG------SYCLTCGSDKKIKLWNPYRNLLLKTYG--GHAHEVNDATAAC---DS------SQIASGAS 75 (341)
Q Consensus 13 ~~~v~~~~~~~~~------~~l~t~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~---~~------~~l~~~~~ 75 (341)
+..|.|+++.++. ++++.++.|+.+++..+.....+..+. +-..++.++.+-+ ++ -+|.+|-.
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~ 661 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR 661 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Confidence 4678899998865 579999999999999887655555543 3344444444432 22 25667777
Q ss_pred CCcEEEE
Q psy17863 76 DKSVILW 82 (341)
Q Consensus 76 dg~i~iw 82 (341)
+|.+.-.
T Consensus 662 NGvllR~ 668 (1205)
T KOG1898|consen 662 NGVLLRF 668 (1205)
T ss_pred ccEEEEE
Confidence 7765444
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=95.58 E-value=1.5 Score=38.72 Aligned_cols=250 Identities=14% Similarity=0.161 Sum_probs=110.9
Q ss_pred ccCCCEEEEEeCCCeEEEEcCCCcc---eeeEecCc-ccceeEEEEecCC-CEEEEecCCC--cEEEEECCCCceeeeec
Q psy17863 22 NVDGSYCLTCGSDKKIKLWNPYRNL---LLKTYGGH-AHEVNDATAACDS-SQIASGASDK--SVILWEVTTGQPVRRWR 94 (341)
Q Consensus 22 ~~~~~~l~t~~~dg~i~iw~~~~~~---~~~~~~~~-~~~v~~~~~~~~~-~~l~~~~~dg--~i~iw~~~~~~~~~~~~ 94 (341)
..++..++.+..+|.+..-.+.... .+..+ +. ....+++.+..++ .+|+.|+.-| .+.-|....-+.+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc
Confidence 4567788888999999888766533 12222 22 4456677776554 3777777644 44445533334445554
Q ss_pred ccCccEEEEEEcCC----Cc------EEEEec---CCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccC
Q psy17863 95 EHASKVTCVKFNED----SS------VVISGS---QDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVD 161 (341)
Q Consensus 95 ~~~~~v~~~~~~~~----~~------~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~ 161 (341)
.-++|.++++.+. .. .|++++ .+|.+++..-.-+- ..-.+....-.+.-.+|-++.
T Consensus 298 -N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~----------~~~~~~~~~l~~v~~iW~l~~ 366 (504)
T PF10433_consen 298 -NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGI----------EGLELASSELPGVTGIWTLKL 366 (504)
T ss_dssp ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEE----------E--EEEEEEESTEEEEEEE-S
T ss_pred -CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCc----------eeeeeeccCCCCceEEEEeee
Confidence 4567888887531 11 344432 34566555321100 000112222223444454443
Q ss_pred CcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEE---EEccCCCEEEEeec---------C
Q psy17863 162 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDA---CFTRDCQCILTCST---------D 229 (341)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~---~~~~~~~~l~~~~~---------d 229 (341)
... +..+++.+..+.-+++.+.......++..+ .|..+...|+++.. .
T Consensus 367 ~~~--------------------~~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~ 426 (504)
T PF10433_consen 367 SSS--------------------DHSYLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTP 426 (504)
T ss_dssp SSS--------------------SBSEEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEES
T ss_pred cCC--------------------CceEEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEec
Confidence 210 133444444334344444310001111000 22223333333222 2
Q ss_pred CeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEee---eeccceEEEEEcC
Q psy17863 230 ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS---VGKAVVNSLCSHP 306 (341)
Q Consensus 230 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~ 306 (341)
..|++.+...++.........+. ..+..+. ++.+++.+..++.+..+.+............ .....|.|+...|
T Consensus 427 ~~i~l~~~~~~~~~~~w~~~~~~-~I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 427 KGIRLIDLEDGKLTQEWKPPAGS-IIVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp SEEEEEESSSTSEEEEEE-TTS----SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred CeEEEEECCCCeEEEEEeCCCCC-eEEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 34778887766666555333221 1221122 3456777777888999998877664333211 1457788887766
|
... |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.54 E-value=1.2 Score=37.40 Aligned_cols=133 Identities=8% Similarity=0.100 Sum_probs=67.5
Q ss_pred eEEEEEECCCCceEEEeC------------C-CceEEEEccccc-----------CCCCeEEEEEccCCCEEEEeecCCe
Q psy17863 176 VVNSLCSHPTRKHIMSAC------------G-NNVKLWTAEEDY-----------GQEPIVDACFTRDCQCILTCSTDEC 231 (341)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~------------~-~~i~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~d~~ 231 (341)
....+++.++|+++++.. . +.|.+++-.... .......+++.++| |+++.....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCeE
Confidence 356677777777666642 1 244444332111 12234678888888 444444433
Q ss_pred EEEEecccc-----c--e-eeeecCc----ccceeEEEEEeCCCCCEEEEecCC-------------------CcEEEEe
Q psy17863 232 LRLFDKATG-----E--L-LEEYKGH----KSGDFRIECCLDSKDSQIFCGSSD-------------------GKIYKWQ 280 (341)
Q Consensus 232 i~i~d~~~~-----~--~-~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d-------------------g~i~iwd 280 (341)
.++.|.... + . +..+... ......+ .+.|||.+.++-+.. |.|.-++
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l--~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSL--AWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCc--eECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 334344211 1 1 1122221 1122334 788998776654421 3444555
Q ss_pred eeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC
Q psy17863 281 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
...++ ...+. ..-.....++|+|+|+++++-.
T Consensus 171 pdg~~-~e~~a--~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGK-LRVVA--HGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCe-EEEEe--cCcCCCccceECCCCCEEEEcc
Confidence 43332 33333 2234467899999999887755
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.47 E-value=1.6 Score=39.59 Aligned_cols=102 Identities=13% Similarity=0.116 Sum_probs=62.7
Q ss_pred EeecCCCceEEEeeccCeEEEEEccCC-----------c------ceeeeEeeecCceEEEEEEC--CCCceEEEeCC-C
Q psy17863 136 CCLDSKDSQIFCGSSDGKIYKWQLVDS-----------S------QISTLIHSVGKAVVNSLCSH--PTRKHIMSACG-N 195 (341)
Q Consensus 136 ~~~~~~~~~~~~~~~~g~i~~~d~~~~-----------~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~ 195 (341)
.........|+++..||.|.+|.+.+- + .+.......-....-+++++ ...++++++.. .
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 334445556666777777777754210 0 00011111123457788888 77888888776 5
Q ss_pred ceEEEEcccc----------cCCCCeEEEEEccCC---C---EEEEeecCCeEEEEec
Q psy17863 196 NVKLWTAEED----------YGQEPIVDACFTRDC---Q---CILTCSTDECLRLFDK 237 (341)
Q Consensus 196 ~i~~~~~~~~----------~~~~~i~~~~~~~~~---~---~l~~~~~d~~i~i~d~ 237 (341)
.|.+|-+... .+...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 6777665442 144568889987743 2 7888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.46 E-value=1 Score=35.90 Aligned_cols=228 Identities=13% Similarity=0.091 Sum_probs=118.2
Q ss_pred ceeEEEEecCCCEEEEecCCCcEEEEECC------CC-ceeeeecc-----cCccEEEEEEcCCCcEEEEecCCCeEEEE
Q psy17863 57 EVNDATAACDSSQIASGASDKSVILWEVT------TG-QPVRRWRE-----HASKVTCVKFNEDSSVVISGSQDNTVMMW 124 (341)
Q Consensus 57 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 124 (341)
.-..|+++|.+.+-++....+...+||.. .. ..+..+.. .....+.+.|+....+.++....
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~------ 97 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI------ 97 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc------
Confidence 34678999999888887788999999986 11 12223321 12456777777544333332110
Q ss_pred EecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcc-----eeeeEeeecCceEEEEEEC--CCCceEEEeC--CC
Q psy17863 125 DVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQ-----ISTLIHSVGKAVVNSLCSH--PTRKHIMSAC--GN 195 (341)
Q Consensus 125 d~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~ 195 (341)
.....++.++++|+|.-|...-... ...+........-..+++. ..+.+|..+. .+
T Consensus 98 ---------------~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g 162 (336)
T TIGR03118 98 ---------------TGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQG 162 (336)
T ss_pred ---------------ccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCC
Confidence 0112344455555555555322211 0111111111222334433 2244554443 36
Q ss_pred ceEEEEcccccC----------------CC---------CeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeec--C
Q psy17863 196 NVKLWTAEEDYG----------------QE---------PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK--G 248 (341)
Q Consensus 196 ~i~~~~~~~~~~----------------~~---------~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~ 248 (341)
+|.+||-.-... .- -|+-..-.++++.=+.|..-|.|-+||+. +..++.+. +
T Consensus 163 ~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g 241 (336)
T TIGR03118 163 RIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSG 241 (336)
T ss_pred ceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCC
Confidence 666665433210 00 01111122233333344556789999975 77777773 2
Q ss_pred cccceeEEEEEeC----CCCCEEEEecCCCcEEEEeeeCCCceEEEEeee----eccceEEEEEcC
Q psy17863 249 HKSGDFRIECCLD----SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV----GKAVVNSLCSHP 306 (341)
Q Consensus 249 ~~~~~~~~~~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~~ 306 (341)
.-...+.+..+.. ..+.+|+---.||+|..+|..+++.+-.+.... -...++.+.|..
T Consensus 242 ~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 242 RLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred cccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 2334455533221 245566666679999999999998887776211 123567778765
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.97 Score=35.39 Aligned_cols=228 Identities=14% Similarity=0.083 Sum_probs=132.1
Q ss_pred ceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEE
Q psy17863 57 EVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQC 136 (341)
Q Consensus 57 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 136 (341)
.-..++-.|||..-+++...+.|--.|..+|+....--+....-..+..-||+..-++-+.. .|.-.|-++.+
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e------ 135 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE------ 135 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc------
Confidence 34567778888888888888888888888887655444444445566666766554443322 33333333222
Q ss_pred eecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC----------CceEEEEccccc
Q psy17863 137 CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG----------NNVKLWTAEEDY 206 (341)
Q Consensus 137 ~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~~~~~~~ 206 (341)
+.-|- +..+..........|.+.|.+.+++.. +.+++|....
T Consensus 136 -----------------vt~f~---------lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-- 187 (353)
T COG4257 136 -----------------VTRFP---------LPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-- 187 (353)
T ss_pred -----------------eEEee---------cccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC--
Confidence 11111 112223344667778888887777653 3577777663
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcc---cceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 207 GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK---SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 207 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
...-..++..|+|...++.-.+..|-..|..++.. .++.... .....+ ..+|.++.-++-...+.+..+|-.+
T Consensus 188 -G~gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRri--wsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 188 -GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRI--WSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred -CCCCcceEECCCCcEEEEeccccceEEcccccCCc-ceecCCCccccccccc--ccCccCcEEEeccCCceeeEeCccc
Confidence 33455678899999888877777888888776632 2222211 122222 4567888888877788888888655
Q ss_pred CCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEc
Q psy17863 284 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 284 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~ 324 (341)
.. ....+..+.+..-.++.....++...+-- .|.|.-+|.
T Consensus 264 ~s-W~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdp 304 (353)
T COG4257 264 TS-WIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDP 304 (353)
T ss_pred cc-ceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCc
Confidence 43 33333224444455555555555444333 444444443
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.36 E-value=1.3 Score=36.58 Aligned_cols=58 Identities=9% Similarity=0.130 Sum_probs=38.4
Q ss_pred CCCEEEEecCCCcEEEEeeeCCCceEEEEe--eeeccceEEEEEcCCCcEEEEeC-CCcEE
Q psy17863 263 KDSQIFCGSSDGKIYKWQLVDSSQISTLIH--SVGKAVVNSLCSHPTRKHIMSAC-GNNVK 320 (341)
Q Consensus 263 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~-d~~i~ 320 (341)
.+.++++.-..+.|....+..+..+..... ......+..+++.|||.++++.. +|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 455666666677888888875544333321 12334799999999999999888 88764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.94 Score=34.54 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=39.9
Q ss_pred EEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCC
Q psy17863 213 DACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDS 262 (341)
Q Consensus 213 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (341)
.+++..+|++.++.-..++|...|..+|+.+.++.-....+++. ||--
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsc--cFgG 263 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSC--CFGG 263 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEE--EecC
Confidence 35556788988999899999999999999999999888887776 6643
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.1 Score=35.07 Aligned_cols=184 Identities=10% Similarity=0.027 Sum_probs=99.4
Q ss_pred eeeeecc-cCccEEEEEEcCCCcEEEEecCCC--eEEEEEecCCCCcCeEEe---------ecCCCceEEEeeccCeEEE
Q psy17863 89 PVRRWRE-HASKVTCVKFNEDSSVVISGSQDN--TVMMWDVKSRSHHPIQCC---------LDSKDSQIFCGSSDGKIYK 156 (341)
Q Consensus 89 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~i~~ 156 (341)
.+.+++. ...-...+.|..++.++-+.+.-| .|+.+|+.+++......+ ....+......=.++...+
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFV 114 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEE
Confidence 3444442 233456788877888888888776 678888888762111111 1112223333445677888
Q ss_pred EEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEe
Q psy17863 157 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFD 236 (341)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 236 (341)
||..+.+.+..+.... + =..++ .+++.|+.......++.+|
T Consensus 115 yd~~tl~~~~~~~y~~-E------------------------------------GWGLt--~dg~~Li~SDGS~~L~~~d 155 (264)
T PF05096_consen 115 YDPNTLKKIGTFPYPG-E------------------------------------GWGLT--SDGKRLIMSDGSSRLYFLD 155 (264)
T ss_dssp EETTTTEEEEEEE-SS-S--------------------------------------EEE--ECSSCEEEE-SSSEEEEE-
T ss_pred EccccceEEEEEecCC-c------------------------------------ceEEE--cCCCEEEEECCccceEEEC
Confidence 8887776666554321 1 11122 3455566666666788888
Q ss_pred ccccceeeeecCcc--cc---eeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEee-------------eeccc
Q psy17863 237 KATGELLEEYKGHK--SG---DFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS-------------VGKAV 298 (341)
Q Consensus 237 ~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~~~ 298 (341)
..+.+..+.+.... .+ +.-+.+. +|...|=.-....|...|..+|+....+... .....
T Consensus 156 P~~f~~~~~i~V~~~g~pv~~LNELE~i---~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dV 232 (264)
T PF05096_consen 156 PETFKEVRTIQVTDNGRPVSNLNELEYI---NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDV 232 (264)
T ss_dssp TTT-SEEEEEE-EETTEE---EEEEEEE---TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-
T ss_pred CcccceEEEEEEEECCEECCCcEeEEEE---cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCe
Confidence 77766655554322 11 2223222 4544444455667777888888877766411 11356
Q ss_pred eEEEEEcCCCcE-EEEe
Q psy17863 299 VNSLCSHPTRKH-IMSA 314 (341)
Q Consensus 299 v~~~~~~~~~~~-l~~~ 314 (341)
.+.+++.|+... ++||
T Consensus 233 LNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 233 LNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred eEeEeEeCCCCEEEEEe
Confidence 899999887654 4555
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.99 Score=34.02 Aligned_cols=128 Identities=13% Similarity=0.206 Sum_probs=74.9
Q ss_pred CEEEEecCCCcEEEEECCC--CceeeeecccCccEEEEEEcCCCcEEEEecCCC------eEEEE---EecCCCCcCeEE
Q psy17863 68 SQIASGASDKSVILWEVTT--GQPVRRWREHASKVTCVKFNEDSSVVISGSQDN------TVMMW---DVKSRSHHPIQC 136 (341)
Q Consensus 68 ~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~iw---d~~~~~~~~~~~ 136 (341)
+.|+.+...+.|.+|++.. .+....+.. -+.|..+.++..|++|++--.+. .+++| +.......++..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4555556667899999983 344556653 47899999999999999864432 45553 322222222221
Q ss_pred eecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccC
Q psy17863 137 CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYG 207 (341)
Q Consensus 137 ~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 207 (341)
-... .-+.++..+.. ..++..+..+ -...+.+++..|-...+++++++.+.+|.+....+
T Consensus 108 RiaG---~~v~~~~~~~~-------~~qleiiElP-l~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 108 RIAG---HRVTPSFNESS-------KDQLEIIELP-LSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTI 167 (215)
T ss_pred EEcc---cccccCCCCcc-------ccceEEEEec-CCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEE
Confidence 1100 00111111100 1112222222 34568899999999999999999999998876543
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.16 E-value=1.2 Score=35.11 Aligned_cols=140 Identities=16% Similarity=0.177 Sum_probs=83.5
Q ss_pred ceeEEEEecCCCEEEEec---CCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEE-ecCCCCc
Q psy17863 57 EVNDATAACDSSQIASGA---SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD-VKSRSHH 132 (341)
Q Consensus 57 ~v~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~ 132 (341)
.+.+.+++++++.++... ....+.++. .+....... ....+..-.|++++...+....+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999877655 233444544 333333322 233677788999877666655555555543 1111100
Q ss_pred CeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC----CCceEEEEccccc--
Q psy17863 133 PIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC----GNNVKLWTAEEDY-- 206 (341)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~-- 206 (341)
. ...........|..+.++|+|..++... ++.+.+--+..+.
T Consensus 102 ~--------------------------------~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g 149 (253)
T PF10647_consen 102 P--------------------------------VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG 149 (253)
T ss_pred e--------------------------------EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC
Confidence 0 0000000111699999999999887766 5666666544322
Q ss_pred --------------CCCCeEEEEEccCCCEEEEeecCCe
Q psy17863 207 --------------GQEPIVDACFTRDCQCILTCSTDEC 231 (341)
Q Consensus 207 --------------~~~~i~~~~~~~~~~~l~~~~~d~~ 231 (341)
....++.+.|.+++.+++.+...+.
T Consensus 150 ~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 150 VPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred CcceeccceEecccccCcceeeeecCCCEEEEEeCCCCC
Confidence 2357889999999998777665443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=2.2 Score=37.46 Aligned_cols=60 Identities=5% Similarity=0.009 Sum_probs=31.3
Q ss_pred CCCCEEEEecCCCcEEEEeeeCCCceEEEEeeee-ccceEEEEEcCCCcEEEEeC-C-----CcEEEEEcccc
Q psy17863 262 SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG-KAVVNSLCSHPTRKHIMSAC-G-----NNVKLWTAEED 327 (341)
Q Consensus 262 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-d-----~~i~vw~~~~~ 327 (341)
-+++..+.|+ .+.+||..+.+-. .+..... ..... ++ .-++++.+.|+ + ..+..||..++
T Consensus 406 ~~~~IYv~GG---~~e~ydp~~~~W~-~~~~m~~~r~~~~-~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 406 FGRRLFLVGR---NAEFYCESSNTWT-LIDDPIYPRDNPE-LI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ECCEEEEECC---ceEEecCCCCcEe-EcCCCCCCccccE-EE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 3465666664 4678887665432 2221111 11222 22 24678888887 4 24677776654
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.84 Score=39.01 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=50.9
Q ss_pred CCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEccccc
Q psy17863 262 SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 328 (341)
Q Consensus 262 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~~ 328 (341)
....++|+++..|.|++||--..+-...++ +-...|..+..+.+|+++++.+...+.+-|++-..
T Consensus 571 TesGyIa~as~kGDirLyDRig~rAKtalP--~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ik~ 635 (776)
T COG5167 571 TESGYIAAASRKGDIRLYDRIGKRAKTALP--GLGDAIKHIDVTANGKHILATCKNYLLLTDVPIKY 635 (776)
T ss_pred ccCceEEEecCCCceeeehhhcchhhhcCc--ccccceeeeEeecCCcEEEEeecceEEEEeccccc
Confidence 345699999999999999954333334444 66788999999999999988888888888887544
|
|
| >KOG2377|consensus | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.35 Score=40.54 Aligned_cols=103 Identities=13% Similarity=0.228 Sum_probs=73.5
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcce----eeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCC
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLL----LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 87 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 87 (341)
..++|.++.||+|.+.||+--.+.+|.+++....+. ..+.+..+..|....|+.+ .-+|.....| +-+|-....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 357999999999999999999999999999743222 2223344556888888854 5666666666 777766543
Q ss_pred -ceeeeecccCccEEEEEEcCCCcEEEEec
Q psy17863 88 -QPVRRWREHASKVTCVKFNEDSSVVISGS 116 (341)
Q Consensus 88 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 116 (341)
+.++..+.|...|.-..|.++.+.++-++
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeec
Confidence 44566677888888888888777554443
|
|
| >KOG1983|consensus | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.4 Score=42.19 Aligned_cols=222 Identities=14% Similarity=0.095 Sum_probs=101.6
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCccc-ceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeee
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH-EVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 93 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 93 (341)
....++|+|...++|.+...|.|+++-...-+.....+.-.. .+..+.+-...........+..+.+|.......+
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~--- 113 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGV--- 113 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeeccccccee---
Confidence 556789999999999999999999998544333322221111 2222222222222333344455666654322211
Q ss_pred cccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEee-ccCeEEEEEccCCcc-eeeeE--
Q psy17863 94 REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGS-SDGKIYKWQLVDSSQ-ISTLI-- 169 (341)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~g~i~~~d~~~~~~-~~~~~-- 169 (341)
.+...+++..-.+--.. +.+ ..+.+++||..-..................... .-..-..|....... .....
T Consensus 114 -~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 190 (993)
T KOG1983|consen 114 -FLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISLPDA 190 (993)
T ss_pred -ecCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeecccc
Confidence 12233333333222223 344 778888888654332222111111111000000 000000111111100 00000
Q ss_pred ---eeecCceEEEEEECCCCceEEEeCCCceEEEEccccc--CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccce
Q psy17863 170 ---HSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY--GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL 242 (341)
Q Consensus 170 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 242 (341)
.......+.+..+....+.......+.+-.|+..... +.-.+.....++++..++++..||.+..||...++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 191 YLGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccccCccCCceEEEEEecCCEEeeecCCCce
Confidence 0011222333444444444444444555555444332 111122222278899999999999999999988754
|
|
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=94.90 E-value=1.1 Score=42.19 Aligned_cols=137 Identities=11% Similarity=0.060 Sum_probs=82.8
Q ss_pred ceEEEEEECCCCceEEEeC---CCceEEEEccccc------------------CCCCeEEEEEccCC-CEEEEeecCCeE
Q psy17863 175 AVVNSLCSHPTRKHIMSAC---GNNVKLWTAEEDY------------------GQEPIVDACFTRDC-QCILTCSTDECL 232 (341)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~------------------~~~~i~~~~~~~~~-~~l~~~~~d~~i 232 (341)
..+..+...+|....++.. +..|..||++.-. ......++.|.|.- ...+++..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 3455555566655443332 2356667765421 12233456666642 234566778888
Q ss_pred EEEeccccce-eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEee--eeccceEEEEEcCCCc
Q psy17863 233 RLFDKATGEL-LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS--VGKAVVNSLCSHPTRK 309 (341)
Q Consensus 233 ~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~ 309 (341)
++..+..... +..+. .....+++ +|+|.|+.++.|-..|++.-|.. +++....+... .....|.+++|-....
T Consensus 181 ~V~~~~~~~~~v~s~p-~t~~~Tav--~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP-VTNSQTAV--LWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhhhcccC-cccceeeE--EeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEeccee
Confidence 8887653322 22222 22334444 89999999999999999999873 44443333311 1246899999998888
Q ss_pred EEEEeC
Q psy17863 310 HIMSAC 315 (341)
Q Consensus 310 ~l~~~~ 315 (341)
+|++-+
T Consensus 257 flvvy~ 262 (1405)
T KOG3630|consen 257 FLVVYG 262 (1405)
T ss_pred EEEEec
Confidence 887765
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.68 E-value=2.3 Score=35.82 Aligned_cols=162 Identities=9% Similarity=0.091 Sum_probs=82.1
Q ss_pred CcEEEEEEccCCCEEEEEe-----------CCC-eEEEEcCCC--cc--eeeEecCcccceeEEEEecCCCEEEEecCCC
Q psy17863 14 GAIRAVRFNVDGSYCLTCG-----------SDK-KIKLWNPYR--NL--LLKTYGGHAHEVNDATAACDSSQIASGASDK 77 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~-----------~dg-~i~iw~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 77 (341)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+.........+++.+++ +++ +....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 4567899999999777642 223 677776432 32 223443334456889999888 444 44444
Q ss_pred cEEEEECCCC-----ce--e-eeecc----cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceE
Q psy17863 78 SVILWEVTTG-----QP--V-RRWRE----HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQI 145 (341)
Q Consensus 78 ~i~iw~~~~~-----~~--~-~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 145 (341)
..++.+.... +. + ..+.. +......++|.|||.+.++.+..+.-.. ..... ...
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~--~~~~~---------~~~--- 157 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV--TRPGT---------SDE--- 157 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee--ccCCC---------ccC---
Confidence 3333344221 11 1 12222 1234678999999887666553221110 00000 000
Q ss_pred EEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC
Q psy17863 146 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG 194 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (341)
-.....|.+..++....+. ..+. .+......++|+|+++++++-.+
T Consensus 158 ~~~~~~g~i~r~~pdg~~~-e~~a--~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 158 SRQGLGGGLFRYNPDGGKL-RVVA--HGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred cccccCceEEEEecCCCeE-EEEe--cCcCCCccceECCCCCEEEEccC
Confidence 0001224455555544332 1221 12334678999999988776543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1900|consensus | Back alignment and domain information |
|---|
Probab=94.50 E-value=2.4 Score=40.73 Aligned_cols=140 Identities=10% Similarity=0.161 Sum_probs=80.2
Q ss_pred cCCCcEEEEECCCCceeeeecccCccEEEEEEc--------CCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceE
Q psy17863 74 ASDKSVILWEVTTGQPVRRWREHASKVTCVKFN--------EDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQI 145 (341)
Q Consensus 74 ~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 145 (341)
+-|+.+.+|+++++.....+.+-...|..+..- |.=++++....--.|.++-+.-.+....
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~----------- 164 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGE----------- 164 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCc-----------
Confidence 567889999999988777777766667666542 2223344333344455554332110000
Q ss_pred EEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccc---------------------
Q psy17863 146 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE--------------------- 204 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------------------- 204 (341)
..++.. .+........+.++....+|+.++++.++.++-.-...
T Consensus 165 --------~~~f~~-------~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~ 229 (1311)
T KOG1900|consen 165 --------LSIFNT-------SFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSS 229 (1311)
T ss_pred --------cccccc-------ceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHH
Confidence 000000 01111122345555555566666665555322111110
Q ss_pred ---------ccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccc
Q psy17863 205 ---------DYGQEPIVDACFTRDCQCILTCSTDECLRLFDKAT 239 (341)
Q Consensus 205 ---------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 239 (341)
..+..+|..+++......+.+-++.|+|++||+..
T Consensus 230 lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 230 LVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 12467899999999999999999999999999875
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.32 E-value=2.4 Score=38.57 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=24.4
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEc
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWN 41 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~ 41 (341)
-.+.|-..+||.|.+.++....+..|.+++
T Consensus 111 v~nGIvaa~wS~DE~~~cvvt~~r~il~~~ 140 (1243)
T COG5290 111 VSNGIVAASWSADEKTWCVVTSTREILLFD 140 (1243)
T ss_pred ccCceEEEeeccCCceEEEEEcCceEEEEe
Confidence 356788999999999777777788888876
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.49 Score=36.34 Aligned_cols=66 Identities=14% Similarity=0.260 Sum_probs=46.6
Q ss_pred EccCCCEEEEEeCCCeEEEEcCCCcceeeEe-------c-------CcccceeEEEEecCCCEEEEecCCCcEEEEECCC
Q psy17863 21 FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTY-------G-------GHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 21 ~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 86 (341)
+..++++|++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|....|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4457889999999999999999887654322 1 2445677777777776666544 46778887654
Q ss_pred C
Q psy17863 87 G 87 (341)
Q Consensus 87 ~ 87 (341)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 3
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.21 E-value=3 Score=35.28 Aligned_cols=155 Identities=14% Similarity=0.162 Sum_probs=82.8
Q ss_pred CccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCC----------------ceEEEeeccCeEEEE-Ec
Q psy17863 97 ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKD----------------SQIFCGSSDGKIYKW-QL 159 (341)
Q Consensus 97 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----------------~~~~~~~~~g~i~~~-d~ 159 (341)
...+..+-..|||+.++.-+. .++.++++.+............++ -.+++++.||-+.-| |.
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence 345566677788887776654 577788777654322222222222 256667777776655 33
Q ss_pred cCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccc
Q psy17863 160 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKAT 239 (341)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 239 (341)
+.... ..+ ..+....+.|.. +.-+.-..+.+-+++-..+|++.++....
T Consensus 299 r~~~~-p~l------~h~R~f~l~pa~------------------------~~~l~pe~~rkgF~~l~~~G~L~~f~st~ 347 (733)
T COG4590 299 RRDGQ-PHL------NHIRNFKLAPAE------------------------VQFLLPETNRKGFYSLYRNGTLQSFYSTS 347 (733)
T ss_pred ecCCC-Ccc------eeeeccccCccc------------------------ceeeccccccceEEEEcCCCceeeeeccc
Confidence 33222 111 112222222222 22222222334566777788888877544
Q ss_pred cceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCce
Q psy17863 240 GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 287 (341)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (341)
.+.+-.-+..+ .+..+ +++|++.++++- ..|.++++.+++..+.
T Consensus 348 ~~~lL~~~~~~-~~~~~--~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 348 EKLLLFERAYQ-APQLV--AMSPNQAYLLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred Ccceehhhhhc-Cccee--eeCcccchheee-cCCceEEEEecCCCCC
Confidence 44332222222 23334 789999888865 4678999988776543
|
|
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.014 Score=48.69 Aligned_cols=108 Identities=13% Similarity=0.185 Sum_probs=72.9
Q ss_pred cEEEEEEccCCCEEE-EEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeee
Q psy17863 15 AIRAVRFNVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 93 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 93 (341)
....++|..++..++ .+-..+.+.+||+.+......-.+....-.-+.|++....++.+...|.+.+++..+.+.+...
T Consensus 76 ~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~ 155 (615)
T KOG2247|consen 76 KALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM 155 (615)
T ss_pred hHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhh
Confidence 344566766666554 3455788999998764322111111222222789998888999989999999998887776666
Q ss_pred cccCccEEEEEEcCCCcEEEEecCCCeEEE
Q psy17863 94 REHASKVTCVKFNEDSSVVISGSQDNTVMM 123 (341)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 123 (341)
-.|...++++++.+.+. .+.++.|..+.+
T Consensus 156 Gkh~RRgtq~av~lEd~-vil~dcd~~L~v 184 (615)
T KOG2247|consen 156 GKHQRRGTQIAVTLEDY-VILCDCDNTLSV 184 (615)
T ss_pred cccccceeEEEecccce-eeecCcHHHHHH
Confidence 56999999999998764 555555554433
|
|
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.056 Score=48.84 Aligned_cols=113 Identities=19% Similarity=0.281 Sum_probs=69.0
Q ss_pred cEEEEEEcc---CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEE-----------EecCCCEEEEecCCCcEE
Q psy17863 15 AIRAVRFNV---DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT-----------AACDSSQIASGASDKSVI 80 (341)
Q Consensus 15 ~v~~~~~~~---~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~~~~~dg~i~ 80 (341)
.+.-+.|.| +.-++..+-.++.|++-+..+... ..+.+|...++.++ .+|||+.++.+..||.++
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~ 260 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVG 260 (1283)
T ss_pred CcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence 344455544 566777777888888877654332 44555776655543 589999999999999988
Q ss_pred EEECC-----CCceeeeecccC-ccEEEEEEcCCCc---------EEEE-ecCCCeEEEEEecC
Q psy17863 81 LWEVT-----TGQPVRRWREHA-SKVTCVKFNEDSS---------VVIS-GSQDNTVMMWDVKS 128 (341)
Q Consensus 81 iw~~~-----~~~~~~~~~~~~-~~v~~~~~~~~~~---------~l~~-~~~d~~i~iwd~~~ 128 (341)
.|.+. ..+++...+.|. .+-.|.-++.+.. ++++ ...+..+++|.-..
T Consensus 261 f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 261 FYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred eeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 88763 234556666666 3333333443221 2333 33456677777543
|
|
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.28 Score=45.81 Aligned_cols=120 Identities=10% Similarity=0.005 Sum_probs=77.7
Q ss_pred EEeeeC-CcEEEEEEccCCCEEEEEeC--CCeEEEEcCCCcceee-----EecC------cccceeEEEEecCCC-EEEE
Q psy17863 8 TIDCKQ-GAIRAVRFNVDGSYCLTCGS--DKKIKLWNPYRNLLLK-----TYGG------HAHEVNDATAACDSS-QIAS 72 (341)
Q Consensus 8 ~l~~h~-~~v~~~~~~~~~~~l~t~~~--dg~i~iw~~~~~~~~~-----~~~~------~~~~v~~~~~~~~~~-~l~~ 72 (341)
+++-|. -+|..+..++|+...++... +-.|..||+.+-..-. -+.. ...-..++.|.|.-. ..++
T Consensus 94 t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av 173 (1405)
T KOG3630|consen 94 TFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAV 173 (1405)
T ss_pred ceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhh
Confidence 344443 45667777788765554433 4478889976532211 1111 223456778887532 3566
Q ss_pred ecCCCcEEEEECCCCce-eeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC
Q psy17863 73 GASDKSVILWEVTTGQP-VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 128 (341)
Q Consensus 73 ~~~dg~i~iw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 128 (341)
...|+.|++..+..... +..+. .....++++|+|.|+.++.|-..|++.-|...-
T Consensus 174 ~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 174 DLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 77889999887754332 22222 456789999999999999999999999887554
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.92 Score=40.99 Aligned_cols=105 Identities=12% Similarity=0.182 Sum_probs=60.3
Q ss_pred EEEEccCCCEEEEEeCCC-----eEEEEcCCCcceeeEe---cCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCce
Q psy17863 18 AVRFNVDGSYCLTCGSDK-----KIKLWNPYRNLLLKTY---GGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP 89 (341)
Q Consensus 18 ~~~~~~~~~~l~t~~~dg-----~i~iw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 89 (341)
.++|-|+|..++|-+.|| .|+.+..+ |-....+ .+....+..++|+-....++.+ ..+.+.+|-..+-..
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErN-GLrHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhW 328 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERN-GLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHW 328 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccC-CcccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEE
Confidence 488999999999987655 35566532 2111111 1234456667776655555543 446799998665444
Q ss_pred eeeecccCccEEEEEEcCC--CcEEEEecCCCeEEEEEe
Q psy17863 90 VRRWREHASKVTCVKFNED--SSVVISGSQDNTVMMWDV 126 (341)
Q Consensus 90 ~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~ 126 (341)
.-.....-..+.-+.|+|. ..++++.+ +.|..-++
T Consensus 329 YLK~e~~ip~~s~vkwhpe~~nTl~f~d~--~~I~~V~f 365 (1243)
T COG5290 329 YLKVERQIPGISYVKWHPEEKNTLLFRDG--ERILRVFF 365 (1243)
T ss_pred EEEEeecCCCcceeeeccccCcEEEEecC--CeEEEEEe
Confidence 3333334456778899994 33444433 44444333
|
|
| >KOG4460|consensus | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.59 Score=39.99 Aligned_cols=79 Identities=10% Similarity=0.002 Sum_probs=53.9
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEc---------CCCcceeeEe-----------cCcccceeEEEEecCC---CE
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWN---------PYRNLLLKTY-----------GGHAHEVNDATAACDS---SQ 69 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~---------~~~~~~~~~~-----------~~~~~~v~~~~~~~~~---~~ 69 (341)
.-.|..+..++.|..++-.|.+|.+..+= +++|+..... +...-.+...+|+|+. ..
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 34688899999999999999999665543 2233322111 1112245677899965 56
Q ss_pred EEEecCCCcEEEEECCCCceee
Q psy17863 70 IASGASDKSVILWEVTTGQPVR 91 (341)
Q Consensus 70 l~~~~~dg~i~iw~~~~~~~~~ 91 (341)
|..-+.|..|++||+.....+.
T Consensus 183 L~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEEEecCcEEEEEecCCcchhh
Confidence 7778889999999998765553
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=3.8 Score=34.78 Aligned_cols=140 Identities=14% Similarity=0.107 Sum_probs=86.1
Q ss_pred EEEEEECCCCceEEEeCCCceEE--------EEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccc-----ee
Q psy17863 177 VNSLCSHPTRKHIMSACGNNVKL--------WTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGE-----LL 243 (341)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-----~~ 243 (341)
...+...+++.+++.+..+.+.. |..........++.+.+.+++..++++ ..|.+.. ....++ ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccce
Confidence 45566788888888888766543 444444456778999999999977766 5555443 333343 22
Q ss_pred eeecCcc--cceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEe-eeeccceEEEEEcCCCcEEEEeCCCcEE
Q psy17863 244 EEYKGHK--SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH-SVGKAVVNSLCSHPTRKHIMSACGNNVK 320 (341)
Q Consensus 244 ~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~d~~i~ 320 (341)
.+..... ..+..+ .+.+++..+ .++..|.+.... ..|+....... ..-......+.|.++++.+++|.+|.|.
T Consensus 319 ~~~~~~~~~~~l~~v--~~~~d~~~~-a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il 394 (398)
T PLN00033 319 EEADIKSRGFGILDV--GYRSKKEAW-AAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLL 394 (398)
T ss_pred eecccCCCCcceEEE--EEcCCCcEE-EEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEE
Confidence 2222211 124444 677766554 455677766654 45555444331 1234578899998888888888888765
Q ss_pred EE
Q psy17863 321 LW 322 (341)
Q Consensus 321 vw 322 (341)
-|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Confidence 54
|
|
| >KOG1983|consensus | Back alignment and domain information |
|---|
Probab=93.47 E-value=4.4 Score=39.02 Aligned_cols=221 Identities=12% Similarity=0.098 Sum_probs=97.7
Q ss_pred cceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccC-ccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCc--
Q psy17863 56 HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHA-SKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH-- 132 (341)
Q Consensus 56 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-- 132 (341)
.....++|+|...+++.+...|.|+++-...-+.....+... ..+..+.+-...........+..+.+|........
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~ 115 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVFL 115 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceeec
Confidence 355678999999999999999999999754332222211111 01122222211122333334555666665432210
Q ss_pred --CeEEee-cCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCce-EEEEEECCCCceEEEeCCCceEEEEccc----
Q psy17863 133 --PIQCCL-DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV-VNSLCSHPTRKHIMSACGNNVKLWTAEE---- 204 (341)
Q Consensus 133 --~~~~~~-~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~---- 204 (341)
...+.. ..+-.. +.+ ..+.++++|..-............... ......++.-.......+-.-.++.+..
T Consensus 116 ~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (993)
T KOG1983|consen 116 KQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISLPDAYLG 193 (993)
T ss_pred CCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeeccccccc
Confidence 111111 111123 445 777787777643222111111000000 0000111110000000010111111111
Q ss_pred -ccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 205 -DYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 205 -~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
..+..++.+..+...... +.+...+.+-.|+.........+..... ..+.++..++++-.||.+.+||...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~h~Dgs~~fWd~s~ 265 (993)
T KOG1983|consen 194 LSLIEYESLQVLYYSPTKI-LIGFNRGLVVIKDRASKYVQSAYLPNGQ-------LESRDGSHFVSYHTDGSYAFWDVSS 265 (993)
T ss_pred ccccccccceeeeecCCCc-ceeeeeeeeeehhcccccchhhcccccc-------cCccCCceEEEEEecCCEEeeecCC
Confidence 113334444444333332 2333445555565443333333322211 1267889999999999999999988
Q ss_pred CCc
Q psy17863 284 SSQ 286 (341)
Q Consensus 284 ~~~ 286 (341)
++.
T Consensus 266 g~~ 268 (993)
T KOG1983|consen 266 GKL 268 (993)
T ss_pred Cce
Confidence 754
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.48 Score=24.55 Aligned_cols=34 Identities=12% Similarity=0.311 Sum_probs=22.2
Q ss_pred eEEeeeCCcEEEEEEccCCCEEEEEeC-C--CeEEEE
Q psy17863 7 QTIDCKQGAIRAVRFNVDGSYCLTCGS-D--KKIKLW 40 (341)
Q Consensus 7 ~~l~~h~~~v~~~~~~~~~~~l~t~~~-d--g~i~iw 40 (341)
..+....+.-....|+|||++|+-++. + |.-.||
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344556677889999999998886554 4 555554
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.1 Score=33.00 Aligned_cols=31 Identities=6% Similarity=0.204 Sum_probs=23.4
Q ss_pred ccEEEEEEcCCC------cEEEEecCCCeEEEEEecC
Q psy17863 98 SKVTCVKFNEDS------SVVISGSQDNTVMMWDVKS 128 (341)
Q Consensus 98 ~~v~~~~~~~~~------~~l~~~~~d~~i~iwd~~~ 128 (341)
..+..++|+|.| -+|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999943 4677778888888887654
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=93.02 E-value=1.3 Score=38.04 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=24.9
Q ss_pred CCeEEEEEccCCCEEEEeecCCeEEEEeccc
Q psy17863 209 EPIVDACFTRDCQCILTCSTDECLRLFDKAT 239 (341)
Q Consensus 209 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 239 (341)
..|.+++..+..+.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488899999889999999999999999874
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=92.53 E-value=1.2 Score=39.87 Aligned_cols=71 Identities=10% Similarity=0.112 Sum_probs=44.1
Q ss_pred cCCCEEEEEeCCCeEEEEcCCC----cceeeEe--cC--------------------cccceeEEEEec----CCCEEEE
Q psy17863 23 VDGSYCLTCGSDKKIKLWNPYR----NLLLKTY--GG--------------------HAHEVNDATAAC----DSSQIAS 72 (341)
Q Consensus 23 ~~~~~l~t~~~dg~i~iw~~~~----~~~~~~~--~~--------------------~~~~v~~~~~~~----~~~~l~~ 72 (341)
++...++.+..||.+....... +...... .. ....+..+++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3666788888888888876543 1111111 10 123455566666 7789999
Q ss_pred ecCCCcEEEEECCCCceeeee
Q psy17863 73 GASDKSVILWEVTTGQPVRRW 93 (341)
Q Consensus 73 ~~~dg~i~iw~~~~~~~~~~~ 93 (341)
.+.|+++|+||+.+++++...
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999986654
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=92.38 E-value=3.8 Score=31.03 Aligned_cols=104 Identities=10% Similarity=0.171 Sum_probs=62.9
Q ss_pred EEEEeecCCeEEEEecc--ccceeeeecCcccceeEEEEEeCCCCCEEEEecCC---C---cEEEE---eee--CCCceE
Q psy17863 222 CILTCSTDECLRLFDKA--TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSD---G---KIYKW---QLV--DSSQIS 288 (341)
Q Consensus 222 ~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g---~i~iw---d~~--~~~~~~ 288 (341)
.|+.+.....|.+|++. ..+.+..|..- +.+..+ .++..|++|++--.+ . .+|+| +.. ...++.
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l--~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQL--VYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEE--EeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 34444566679999987 33445566543 555555 788888898876332 2 45554 221 111111
Q ss_pred ---------------------EEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEcccccC
Q psy17863 289 ---------------------TLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYG 329 (341)
Q Consensus 289 ---------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~~~ 329 (341)
.++. +-..++.+++..|-.--|+.|+++.+.+|.+.....
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiEl-Pl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIEL-PLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTI 167 (215)
T ss_pred EEEcccccccCCCCccccceEEEEe-cCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEE
Confidence 1111 224567788888877777788889999999876544
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.96 Score=23.73 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=23.9
Q ss_pred cCCCEEEEEe-CCCeEEEEcCCCcceeeEecC
Q psy17863 23 VDGSYCLTCG-SDKKIKLWNPYRNLLLKTYGG 53 (341)
Q Consensus 23 ~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~ 53 (341)
|++++|.++. .+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5777666655 478999999988888777764
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=92.14 E-value=5.3 Score=32.11 Aligned_cols=112 Identities=6% Similarity=0.087 Sum_probs=65.9
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEcCC------Cc-ceeeEecC-----cccceeEEEEecCCC------------EEE
Q psy17863 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPY------RN-LLLKTYGG-----HAHEVNDATAACDSS------------QIA 71 (341)
Q Consensus 16 v~~~~~~~~~~~l~t~~~dg~i~iw~~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~l~ 71 (341)
-..|+++|.+.+-++....+...+||.. .. .++.++.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 3579999999888887778999999975 12 22333331 223567777764322 356
Q ss_pred EecCCCcEEEEECCCCce-----eeeec-ccCccE-EEEEEcC--CCcEEEEec-CCCeEEEEEec
Q psy17863 72 SGASDKSVILWEVTTGQP-----VRRWR-EHASKV-TCVKFNE--DSSVVISGS-QDNTVMMWDVK 127 (341)
Q Consensus 72 ~~~~dg~i~iw~~~~~~~-----~~~~~-~~~~~v-~~~~~~~--~~~~l~~~~-~d~~i~iwd~~ 127 (341)
.+++||+|.-|...-+.. ...+. .....| ..+++-. .+.+|+.+. ..++|.++|-.
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 778999999998543322 11121 111222 3344443 345555543 46778887744
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=92.08 E-value=11 Score=35.54 Aligned_cols=125 Identities=17% Similarity=0.102 Sum_probs=79.3
Q ss_pred ceeeeEEeeeC---CcEEEEEEcc-CCCEEEEEeCCCeEEEEcCCCcc-----eeeEecCccc----------ceeEEEE
Q psy17863 3 YTCVQTIDCKQ---GAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRNL-----LLKTYGGHAH----------EVNDATA 63 (341)
Q Consensus 3 ~~~~~~l~~h~---~~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~~~-----~~~~~~~~~~----------~v~~~~~ 63 (341)
..++.++..+. .+...++|+| +.+.||.....|.-.||++.... .+.....+.+ .-..+.|
T Consensus 132 ~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W 211 (765)
T PF10214_consen 132 PNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILW 211 (765)
T ss_pred cceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEe
Confidence 34555555432 4678999998 45689999999999999992111 1111111122 2347789
Q ss_pred ecCCCEEEEecCCCcEEEEECCCCceee--eecccCccEEEEEEcCC-CcEEEEecCCCeEEEEEecCC
Q psy17863 64 ACDSSQIASGASDKSVILWEVTTGQPVR--RWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSR 129 (341)
Q Consensus 64 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~ 129 (341)
.++.+.|++++. ..+.++|+++..... ........|.++.-++. ..+++.-+ ...|...++...
T Consensus 212 ~~~~~~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 212 VSDSNRLLVCNR-SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS 278 (765)
T ss_pred cCCCCEEEEEcC-CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence 888888888776 458999998876533 12234567888888885 22232222 257777787764
|
These proteins are found in fungi. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=92.08 E-value=2.8 Score=30.86 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=21.7
Q ss_pred CeEEEEEccC------CCEEEEeecCCeEEEEeccc
Q psy17863 210 PIVDACFTRD------CQCILTCSTDECLRLFDKAT 239 (341)
Q Consensus 210 ~i~~~~~~~~------~~~l~~~~~d~~i~i~d~~~ 239 (341)
.+..++|||. +-.|++.+.++.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 5666666663 24688889999999998653
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.07 E-value=4.1 Score=30.68 Aligned_cols=99 Identities=10% Similarity=0.046 Sum_probs=49.9
Q ss_pred ccCCCEEEEeecCCeEEEEeccccceeeeecCcc--cceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEe--
Q psy17863 217 TRDCQCILTCSTDECLRLFDKATGELLEEYKGHK--SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH-- 292 (341)
Q Consensus 217 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-- 292 (341)
..|++.|+.++...+++.-|.++.....+..... .+|..+.=----+|...|-.-.+..|...+..+|+.+..+..
T Consensus 137 t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~ 216 (262)
T COG3823 137 TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSG 216 (262)
T ss_pred ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccC
Confidence 3455556766666677777776654443332111 111111000001343444333444455555566655544431
Q ss_pred --------eeeccceEEEEEcCCC-cEEEEeC
Q psy17863 293 --------SVGKAVVNSLCSHPTR-KHIMSAC 315 (341)
Q Consensus 293 --------~~~~~~v~~~~~~~~~-~~l~~~~ 315 (341)
..+....+.+++.|++ +++++|-
T Consensus 217 L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 217 LLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred CchhcCccccccccccceeecCcCCeEEEecC
Confidence 1344578899999987 5666663
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.64 Score=24.07 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=20.2
Q ss_pred eccceEEEEEcCCCcEEEEeC--C--CcEEEE
Q psy17863 295 GKAVVNSLCSHPTRKHIMSAC--G--NNVKLW 322 (341)
Q Consensus 295 ~~~~v~~~~~~~~~~~l~~~~--d--~~i~vw 322 (341)
....-....|||||+.|+-++ + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567889999999988777 5 666666
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.94 Score=23.77 Aligned_cols=31 Identities=10% Similarity=0.127 Sum_probs=23.5
Q ss_pred cCCCEEEEec-CCCcEEEEECCCCceeeeecc
Q psy17863 65 CDSSQIASGA-SDKSVILWEVTTGQPVRRWRE 95 (341)
Q Consensus 65 ~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~ 95 (341)
|++++|+++. .+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677666654 578999999988887777664
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG1900|consensus | Back alignment and domain information |
|---|
Probab=91.52 E-value=7.5 Score=37.70 Aligned_cols=72 Identities=14% Similarity=0.229 Sum_probs=48.5
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCeEEEEecc----cc---c-e----------------eeeec-CcccceeEEEEEeC
Q psy17863 207 GQEPIVDACFTRDCQCILTCSTDECLRLFDKA----TG---E-L----------------LEEYK-GHKSGDFRIECCLD 261 (341)
Q Consensus 207 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~---~-~----------------~~~~~-~~~~~~~~~~~~~~ 261 (341)
.+..+.++....+|+.+++|- || .+|.+. .+ + + +-.+. .+..+|..+ .++
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi--~ID 251 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQI--TID 251 (1311)
T ss_pred CCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceee--Eec
Confidence 356788888888999777765 44 344421 11 0 0 11222 445677777 777
Q ss_pred CCCCEEEEecCCCcEEEEeeeC
Q psy17863 262 SKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 262 ~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
...+.+.+-++.|+|.+|++..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 7778899999999999999876
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=90.98 E-value=9.8 Score=32.97 Aligned_cols=104 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred EEEEEccCCCEEEEeecCCeEEEEeccccceeeee-------cCcccceeEEEEEeCCCC------CEEEEec-------
Q psy17863 212 VDACFTRDCQCILTCSTDECLRLFDKATGELLEEY-------KGHKSGDFRIECCLDSKD------SQIFCGS------- 271 (341)
Q Consensus 212 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~------~~l~~~~------- 271 (341)
..++|.|||++|++--..|.|++++..++...... .........+ +++|+- ++|+...
T Consensus 33 w~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlgl--al~PdF~~~~~n~~lYvsyt~~~~~~ 110 (454)
T TIGR03606 33 WALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGL--ALHPDFMQEKGNPYVYISYTYKNGDK 110 (454)
T ss_pred eEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeE--EECCCccccCCCcEEEEEEeccCCCC
Q ss_pred ---CCCcEEEEeeeCC-------CceEEEEeeeeccceEEEEEcCCCcEEEEeCCC
Q psy17863 272 ---SDGKIYKWQLVDS-------SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGN 317 (341)
Q Consensus 272 ---~dg~i~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~ 317 (341)
....|.-|.+... +.+..-........-..|+|.|||.++++.+|+
T Consensus 111 ~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 111 ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=90.96 E-value=7.3 Score=31.50 Aligned_cols=146 Identities=11% Similarity=0.128 Sum_probs=80.4
Q ss_pred cEEEEECCCCceeeeecc------cCccEEEEEEcCCC-----cEEEEe-cCCCeEEEEEecCCCCcCeEEeecCCCceE
Q psy17863 78 SVILWEVTTGQPVRRWRE------HASKVTCVKFNEDS-----SVVISG-SQDNTVMMWDVKSRSHHPIQCCLDSKDSQI 145 (341)
Q Consensus 78 ~i~iw~~~~~~~~~~~~~------~~~~v~~~~~~~~~-----~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 145 (341)
.|.+||+.+++.++++.- ..+.+..+.+.... .+++.+ ...+.|.++|+.+++...+..-....+...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 688889988888776643 24567778776521 233333 334678888988876332222222221100
Q ss_pred EEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECC---CCceEEEeCCCceEEEEccccc----------------
Q psy17863 146 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP---TRKHIMSACGNNVKLWTAEEDY---------------- 206 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~---------------- 206 (341)
..-..+|...-| ...+..++.+| +++.+....-...++|.+.+..
T Consensus 115 ~~~~i~g~~~~~----------------~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v 178 (287)
T PF03022_consen 115 GPFTIGGESFQW----------------PDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQV 178 (287)
T ss_dssp EEEEETTEEEEE----------------TTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-
T ss_pred cceeccCceEec----------------CCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccc
Confidence 000011221111 11255666655 6667766654444555443311
Q ss_pred -----CCCCeEEEEEccCCCEEEEeecCCeEEEEeccc
Q psy17863 207 -----GQEPIVDACFTRDCQCILTCSTDECLRLFDKAT 239 (341)
Q Consensus 207 -----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 239 (341)
.......++++++|.++++--..+.|..|+..+
T Consensus 179 ~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 179 QDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred eeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence 123556788899999999988999999999775
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=90.95 E-value=4.8 Score=32.31 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=52.3
Q ss_pred CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEec------CCCcEEEEECCCCceeeeecc-----cCccEEE
Q psy17863 34 DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA------SDKSVILWEVTTGQPVRRWRE-----HASKVTC 102 (341)
Q Consensus 34 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~-----~~~~v~~ 102 (341)
-..|++||..+.+-..--.+-.+.|+.+.|..+.++++.|. ....+..||..+.... .+.. -.++|..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEE
Confidence 34699999877665555556678999999997777777664 3456888998766432 2222 2467887
Q ss_pred EEEcC-CCcEEE
Q psy17863 103 VKFNE-DSSVVI 113 (341)
Q Consensus 103 ~~~~~-~~~~l~ 113 (341)
+.+.. |+..+.
T Consensus 94 ~~~~~~d~~~~~ 105 (281)
T PF12768_consen 94 LTFISNDGSNFW 105 (281)
T ss_pred EEeeccCCceEE
Confidence 77743 343343
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=90.89 E-value=6.8 Score=30.98 Aligned_cols=221 Identities=12% Similarity=0.104 Sum_probs=123.9
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceee-e--
Q psy17863 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVR-R-- 92 (341)
Q Consensus 16 v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~-- 92 (341)
-..++-.|||..-.++...+.|---|..+|+....--+....-..+..-||+..-++-+.. -|.-.|-++.+..+ .
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence 4466777888777777777777778888887655544455556677788888766654433 35555554443221 1
Q ss_pred ecccCccEEEEEEcCCCcEEEEecC---------CCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCc
Q psy17863 93 WREHASKVTCVKFNEDSSVVISGSQ---------DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSS 163 (341)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~ 163 (341)
.+..........|.+.|++-+++.. .+.|++|+...+. .+.-.+..+++..-++.-.+..|...|.....
T Consensus 143 ~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~-gpyGi~atpdGsvwyaslagnaiaridp~~~~ 221 (353)
T COG4257 143 LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGG-GPYGICATPDGSVWYASLAGNAIARIDPFAGH 221 (353)
T ss_pred cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCC-CCcceEECCCCcEEEEeccccceEEcccccCC
Confidence 1223456778889999988888753 2467777766433 23444455555555555555666666665552
Q ss_pred ceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccccc--------CCCCeEEEEEccCCCEEEEeecCCeEEE
Q psy17863 164 QISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY--------GQEPIVDACFTRDCQCILTCSTDECLRL 234 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~i~i 234 (341)
................+..+|.++.-++... +.+..+|..... .+..-.++.....++..++--..|.|.-
T Consensus 222 aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~r 301 (353)
T COG4257 222 AEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGR 301 (353)
T ss_pred cceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceee
Confidence 2222111111333556667777777666543 556655554322 2223334444444443333333344444
Q ss_pred Eecc
Q psy17863 235 FDKA 238 (341)
Q Consensus 235 ~d~~ 238 (341)
+|.+
T Consensus 302 fdpe 305 (353)
T COG4257 302 FDPE 305 (353)
T ss_pred cCcc
Confidence 5544
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=90.85 E-value=9 Score=32.34 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=59.6
Q ss_pred EEEEEeCCCeEEEEcCCCcceeeEecCc--ccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccC-ccEEEE
Q psy17863 27 YCLTCGSDKKIKLWNPYRNLLLKTYGGH--AHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHA-SKVTCV 103 (341)
Q Consensus 27 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~v~~~ 103 (341)
.+.++..+|.|.-.|.+++..+.....- ...+..-.+..+|+ ++.++.++.+..+|..+|+.+...+... -.+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 3445567888888888888866544322 12333333443665 7788889999999988999888776555 111111
Q ss_pred EEcCCCcEEEEecCCCeEEEEEecCCC
Q psy17863 104 KFNEDSSVVISGSQDNTVMMWDVKSRS 130 (341)
Q Consensus 104 ~~~~~~~~l~~~~~d~~i~iwd~~~~~ 130 (341)
....++ .++..+.++.+...|..++.
T Consensus 149 ~v~~~~-~v~~~s~~g~~~al~~~tG~ 174 (370)
T COG1520 149 PVVGDG-TVYVGTDDGHLYALNADTGT 174 (370)
T ss_pred cEEcCc-EEEEecCCCeEEEEEccCCc
Confidence 111233 23333355666655555443
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=90.69 E-value=14 Score=34.27 Aligned_cols=72 Identities=10% Similarity=0.078 Sum_probs=45.1
Q ss_pred cceeEEEEecCCCEEEEecC-----CCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCC------CeEEEE
Q psy17863 56 HEVNDATAACDSSQIASGAS-----DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD------NTVMMW 124 (341)
Q Consensus 56 ~~v~~~~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iw 124 (341)
-.+..+.++||+++|+.+.. ...|++.|+.+++.+...-.... ..++|.+|++.|+....+ ..|..+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 34677889999998886532 34588999988864322211111 458999988877665432 244455
Q ss_pred EecCC
Q psy17863 125 DVKSR 129 (341)
Q Consensus 125 d~~~~ 129 (341)
++.++
T Consensus 205 ~lgt~ 209 (686)
T PRK10115 205 TIGTP 209 (686)
T ss_pred ECCCC
Confidence 55544
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=90.61 E-value=1.9 Score=38.59 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=24.9
Q ss_pred CCCEEEEecCCCcEEEEeeeCCCceEEE
Q psy17863 263 KDSQIFCGSSDGKIYKWQLVDSSQISTL 290 (341)
Q Consensus 263 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 290 (341)
+..++++.+.|+.+|+||+.+++++...
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 6679999999999999999999996655
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=90.54 E-value=21 Score=36.03 Aligned_cols=57 Identities=9% Similarity=0.051 Sum_probs=41.6
Q ss_pred CCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEE
Q psy17863 263 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKL 321 (341)
Q Consensus 263 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~v 321 (341)
+++.+++....|.+..+. ..+.+ ..+...+-.+.|..++...+..+.|...+|.++-
T Consensus 712 ~~~~fvald~qg~lt~h~-k~g~p-~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~ 768 (1774)
T PF11725_consen 712 NDNKFVALDDQGDLTAHQ-KPGRP-VPLSRPGLSGEIKDLALDEKQNLYALTSTGELFR 768 (1774)
T ss_pred cCCceEEeccCCcccccc-CCCCC-ccCCCCCCCcchhheeeccccceeEecCCCceee
Confidence 346778888999999998 66663 3444335578999999998877777766886653
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides | Back alignment and domain information |
|---|
Probab=90.03 E-value=2.3 Score=26.92 Aligned_cols=31 Identities=13% Similarity=0.348 Sum_probs=26.0
Q ss_pred ccceEEEEEcCCCcEEEEeC--CCcEEEEEccc
Q psy17863 296 KAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEE 326 (341)
Q Consensus 296 ~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~ 326 (341)
-...+.+.++|++++|..++ .+.|++|+..+
T Consensus 53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 53 FSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 34567889999999998888 89999998764
|
The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity |
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=89.84 E-value=0.047 Score=45.78 Aligned_cols=135 Identities=13% Similarity=0.162 Sum_probs=87.3
Q ss_pred EEEEECCCCceEEEeCC-CceEEEEccccc-----CCCCeEEEEEccCCCEEE-EeecCCeEEEEecccccee-eeecCc
Q psy17863 178 NSLCSHPTRKHIMSACG-NNVKLWTAEEDY-----GQEPIVDACFTRDCQCIL-TCSTDECLRLFDKATGELL-EEYKGH 249 (341)
Q Consensus 178 ~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~-----~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~-~~~~~~ 249 (341)
-...|.|.+..++.++- ..+..||-.... .......++|.-++..++ .+-..+.+.+||+.+.... -++.+.
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~ 117 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGT 117 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCc
Confidence 34556666665665554 556666654433 334455667777766544 4556788999998754321 122222
Q ss_pred ccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCC
Q psy17863 250 KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGN 317 (341)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~ 317 (341)
... .-. .|++....++.+...|.+.|++..+.+.....- .|...++++++.+.+..+...+|.
T Consensus 118 ~s~-sll--~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G--kh~RRgtq~av~lEd~vil~dcd~ 180 (615)
T KOG2247|consen 118 SSK-SLL--AWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG--KHQRRGTQIAVTLEDYVILCDCDN 180 (615)
T ss_pred chH-HHH--hhccCCccccccccccceEEEeccchhhhhhhc--ccccceeEEEecccceeeecCcHH
Confidence 111 112 688888899999999999999988777766664 588899999999987655433344
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=89.57 E-value=12 Score=31.58 Aligned_cols=114 Identities=13% Similarity=0.207 Sum_probs=66.7
Q ss_pred eEEEEE--cc-CCC-EEEEeecCCeEEEEeccc---c----ceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEE
Q psy17863 211 IVDACF--TR-DCQ-CILTCSTDECLRLFDKAT---G----ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKW 279 (341)
Q Consensus 211 i~~~~~--~~-~~~-~l~~~~~d~~i~i~d~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 279 (341)
+..+|+ +| +|. ++++...+|.+..|.+.. + +++++|.... .+..+ +.+....+|+.+-++--|.-|
T Consensus 158 ~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s-Q~EGC--VVDDe~g~LYvgEE~~GIW~y 234 (381)
T PF02333_consen 158 PYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS-QPEGC--VVDDETGRLYVGEEDVGIWRY 234 (381)
T ss_dssp EEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS--EEEE--EEETTTTEEEEEETTTEEEEE
T ss_pred ceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC-cceEE--EEecccCCEEEecCccEEEEE
Confidence 455665 33 344 566778889888887652 2 4577776544 33333 677878899999988777777
Q ss_pred eeeCC--CceEEE---EeeeeccceEEEEEc--CCC-cEEEEeC--CCcEEEEEcccc
Q psy17863 280 QLVDS--SQISTL---IHSVGKAVVNSLCSH--PTR-KHIMSAC--GNNVKLWTAEED 327 (341)
Q Consensus 280 d~~~~--~~~~~~---~~~~~~~~v~~~~~~--~~~-~~l~~~~--d~~i~vw~~~~~ 327 (341)
+.+.. .....+ ........|-.|+.- +++ .||++++ +++..||+.+..
T Consensus 235 ~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 235 DAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp ESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred ecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 76522 111222 111233567777664 333 3666665 889999998764
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=88.99 E-value=9.5 Score=29.86 Aligned_cols=70 Identities=9% Similarity=0.147 Sum_probs=41.0
Q ss_pred EEEEEECCCCceEEEeCCC--ceEEEEccccc----------------CCCCeEEEEEccCCCEEEEeecCCeEEEEecc
Q psy17863 177 VNSLCSHPTRKHIMSACGN--NVKLWTAEEDY----------------GQEPIVDACFTRDCQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~----------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 238 (341)
-.+...-|+|+.++.++.. ....|...... ...-...+...|+|++++.+..+ -.+||..
T Consensus 120 YpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~ 197 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYK 197 (243)
T ss_pred cccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCC
Confidence 3445566778877777643 33343332110 11122346678899999888765 4566877
Q ss_pred ccceeeeecC
Q psy17863 239 TGELLEEYKG 248 (341)
Q Consensus 239 ~~~~~~~~~~ 248 (341)
+.+.++.+..
T Consensus 198 ~n~v~~~lP~ 207 (243)
T PF07250_consen 198 TNTVVRTLPD 207 (243)
T ss_pred CCeEEeeCCC
Confidence 7766666553
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=88.93 E-value=11 Score=30.51 Aligned_cols=158 Identities=13% Similarity=0.148 Sum_probs=84.0
Q ss_pred eEEEEEccCCcceeeeEeee----cCceEEEEEECCCC-----ceEEEeC--CCceEEEEccccc---------------
Q psy17863 153 KIYKWQLVDSSQISTLIHSV----GKAVVNSLCSHPTR-----KHIMSAC--GNNVKLWTAEEDY--------------- 206 (341)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~--~~~i~~~~~~~~~--------------- 206 (341)
+|..||+.+.+.++.+.... ..+.+..+.+.... .++..+. ...+.++|+.++.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 56677777777666655332 23456677766632 2333332 3578888877643
Q ss_pred -----------CCCCeEEEEEcc---CCCEEEEeecCCeEEEEecccc-----c---------eeeeecCcc-cceeEEE
Q psy17863 207 -----------GQEPIVDACFTR---DCQCILTCSTDECLRLFDKATG-----E---------LLEEYKGHK-SGDFRIE 257 (341)
Q Consensus 207 -----------~~~~i~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~-----~---------~~~~~~~~~-~~~~~~~ 257 (341)
....+..++.+| +++.|.-....+ -++|.+.+. . .++.+ +.. .....
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g-- 190 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDG-- 190 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECE--
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cccCCCCce--
Confidence 112355666655 666666554433 233333221 0 11111 111 12223
Q ss_pred EEeCCCCCEEEEecCCCcEEEEeeeCC---CceEEEEeeee-ccceEEEEEcC--CCcEEEEe
Q psy17863 258 CCLDSKDSQIFCGSSDGKIYKWQLVDS---SQISTLIHSVG-KAVVNSLCSHP--TRKHIMSA 314 (341)
Q Consensus 258 ~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~-~~~v~~~~~~~--~~~~l~~~ 314 (341)
.+++++|.++++--..+.|..|+.... +....+..... -..+.++.+.+ +|.+.+.+
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 378899988889999999999997652 12333332122 45788999999 77766655
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=88.61 E-value=15 Score=31.56 Aligned_cols=259 Identities=10% Similarity=0.003 Sum_probs=125.3
Q ss_pred CcEEEEEEcc-----CCCEEEEEeCCCeEEEEcCCC--cc-------eeeEecCcc--cceeEEEEec----C-CCEEEE
Q psy17863 14 GAIRAVRFNV-----DGSYCLTCGSDKKIKLWNPYR--NL-------LLKTYGGHA--HEVNDATAAC----D-SSQIAS 72 (341)
Q Consensus 14 ~~v~~~~~~~-----~~~~l~t~~~dg~i~iw~~~~--~~-------~~~~~~~~~--~~v~~~~~~~----~-~~~l~~ 72 (341)
.+|..++.-+ +...||. -....+.||.+.. +. .+..+..|. .....+..-| . ..++++
T Consensus 72 ~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcV 150 (418)
T PF14727_consen 72 DPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICV 150 (418)
T ss_pred CcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEE
Confidence 5777777532 2234444 5577888887621 11 112222232 2233333333 2 357888
Q ss_pred ecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccC
Q psy17863 73 GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDG 152 (341)
Q Consensus 73 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g 152 (341)
-+.||.+.+++-+.-...+.+.. .--...+.|.+..+.+++++.+..+..|....-............+.. -..+...
T Consensus 151 QS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~-~~~~~k~ 228 (418)
T PF14727_consen 151 QSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQ-DISSGKK 228 (418)
T ss_pred EecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccc-ccccccc
Confidence 89999999999665443333332 112234678888888999999989988876432110000000000000 0001112
Q ss_pred eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc-----CCCCeEE-EEE----ccCC--
Q psy17863 153 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY-----GQEPIVD-ACF----TRDC-- 220 (341)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~i~~-~~~----~~~~-- 220 (341)
...-|...-++....+.. +..+.....+++-+...+...+..... .+....+ ..+ ..++
T Consensus 229 l~~dWs~nlGE~~l~i~v---------~~~~~~~~~IvvLger~Lf~l~~~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~ 299 (418)
T PF14727_consen 229 LNPDWSFNLGEQALDIQV---------VRFSSSESDIVVLGERSLFCLKDNGSLRFQKRLDYNPSCFCPYRVPWYNEPST 299 (418)
T ss_pred ccceeEEECCceeEEEEE---------EEcCCCCceEEEEecceEEEEcCCCeEEEEEecCCceeeEEEEEeecccCCCC
Confidence 223344444444333322 222222223333333333332222100 0111111 111 1122
Q ss_pred -CEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc
Q psy17863 221 -QCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 286 (341)
Q Consensus 221 -~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (341)
..+++++.++.+.+|.- .+++..-+....++......+..-...|++-+.+|.+.+-=+.+...
T Consensus 300 ~~~llV~t~t~~LlVy~d--~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 300 RLNLLVGTHTGTLLVYED--TTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred ceEEEEEecCCeEEEEeC--CeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCCc
Confidence 24888899999999963 33443333344444333333444455888889999999887765443
|
|
| >KOG0918|consensus | Back alignment and domain information |
|---|
Probab=88.28 E-value=14 Score=30.93 Aligned_cols=109 Identities=9% Similarity=0.149 Sum_probs=70.6
Q ss_pred CeEEEEeccccceeeeecCcccceeEEEEEe----CCCCCEEEEecCCCcEEEEeeeCCCceEE----EE--------ee
Q psy17863 230 ECLRLFDKATGELLEEYKGHKSGDFRIECCL----DSKDSQIFCGSSDGKIYKWQLVDSSQIST----LI--------HS 293 (341)
Q Consensus 230 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~--------~~ 293 (341)
..+.+|...+++..+++.-.+.....+++.| +++..+.-++-.++.++++.....+.-.. .+ ..
T Consensus 229 ~~lhvy~w~~~~~~QtidL~~~gllpleiRfLh~p~~~~~fvg~Al~s~i~~~~k~~~~tws~~~visvp~~kv~~w~~~ 308 (476)
T KOG0918|consen 229 SHLHVYQWSPGELKQTIDLGDTGLLPLEIRFLHNPSKATGFVGCALSSNIFRFFKNSDDTWSAEVVISVPPLKVENWILP 308 (476)
T ss_pred eeeEEEecCCccceeEEecCCCCcceEEeeeccCCCcccceeeeeccCCceeeeeccccccceeEEEecCccccccccCc
Confidence 4688888888888887765444444443333 23333455555667777776544221111 11 11
Q ss_pred eeccceEEEEEcCCCcEEEEeC--CCcEEEEEcccccCCccceeeee
Q psy17863 294 VGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDYGQAGLSSLYL 338 (341)
Q Consensus 294 ~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~~~~~~~~~~~~~ 338 (341)
.-.+-|+.+-.|-|.++|..+. -|-|+-||+++.....--..+|+
T Consensus 309 eMP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi~l 355 (476)
T KOG0918|consen 309 EMPGLITDILISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQIFL 355 (476)
T ss_pred ccchhhheeEEeecCcEEEEEeeeecceeeeccCCCCCcceEEEEEE
Confidence 2245789999999999999988 99999999999887766666655
|
|
| >KOG2727|consensus | Back alignment and domain information |
|---|
Probab=87.51 E-value=11 Score=35.29 Aligned_cols=78 Identities=10% Similarity=0.137 Sum_probs=54.2
Q ss_pred EEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEe-------C-CC-CC---E-EEEecCCCcEEE
Q psy17863 212 VDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCL-------D-SK-DS---Q-IFCGSSDGKIYK 278 (341)
Q Consensus 212 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~-~~---~-l~~~~~dg~i~i 278 (341)
..++.+|+|++.++...=|.|.+.|...+..++.++|....- +.+.- + +. .+ + .+-+-.-|.+-|
T Consensus 325 e~lslSP~gtlAAVTD~lgRVlLlDta~~ivvr~wKGYRDAs--c~fv~vkek~~~s~~~~sRvAlFLvIyAPRrgiLEV 402 (1244)
T KOG2727|consen 325 EKLSLSPSGTLAAVTDSLGRVLLLDTAALIVVRLWKGYRDAS--CVFVEVKEKKGKSEPVKSRVALFLVIYAPRRGILEV 402 (1244)
T ss_pred ceeeeCCCccEEEEecccCcEEEEehhhhhHHHHhcccccce--eEEEEcccccCCCccCcCceeEEEEEecccccHHHH
Confidence 468899999999998888999999998888887777765431 11111 1 11 11 1 233556788889
Q ss_pred EeeeCCCceEEEE
Q psy17863 279 WQLVDSSQISTLI 291 (341)
Q Consensus 279 wd~~~~~~~~~~~ 291 (341)
|.+.+|-.+..+.
T Consensus 403 W~~q~gpRV~Afn 415 (1244)
T KOG2727|consen 403 WQMQTGPRVLAFN 415 (1244)
T ss_pred HHhccCCeEEEEe
Confidence 9998887777665
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=87.50 E-value=26 Score=33.11 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=46.5
Q ss_pred CcccceeEEEEe---c----CCCEEEEecCCCcEEEEECCCC---------------ceeeeecc---cCccEEEEEEcC
Q psy17863 53 GHAHEVNDATAA---C----DSSQIASGASDKSVILWEVTTG---------------QPVRRWRE---HASKVTCVKFNE 107 (341)
Q Consensus 53 ~~~~~v~~~~~~---~----~~~~l~~~~~dg~i~iw~~~~~---------------~~~~~~~~---~~~~v~~~~~~~ 107 (341)
....+|..|+|. . ..++|++-. ...+.|+...-. .++..+.. ...+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456789999997 2 223555544 455777762111 22333321 234677889998
Q ss_pred -CCcEEEEecCCCeEEEEEe
Q psy17863 108 -DSSVVISGSQDNTVMMWDV 126 (341)
Q Consensus 108 -~~~~l~~~~~d~~i~iwd~ 126 (341)
+...||.....|.-.+|++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred CccceEEEEeccCcEEEEEe
Confidence 5668888899999999998
|
These proteins are found in fungi. |
| >KOG2063|consensus | Back alignment and domain information |
|---|
Probab=87.40 E-value=27 Score=33.14 Aligned_cols=69 Identities=12% Similarity=0.118 Sum_probs=43.2
Q ss_pred EEccCCCEEEEEeCCCeEEEEcCCCcceee---E------e--cCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCc
Q psy17863 20 RFNVDGSYCLTCGSDKKIKLWNPYRNLLLK---T------Y--GGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 88 (341)
Q Consensus 20 ~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~---~------~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 88 (341)
++..-|+.+..|+.+|.+.+|.+.+..... . + .-+..+|..+...+.-..+++ -.|+.+.++++.+-+
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~-l~dsqi~~~~l~~~~ 99 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLI-LSDSQIAVHKLPELE 99 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhe-ecCCcceeeecCccc
Confidence 334457899999999999999876542111 0 1 012456666666665544444 345668888877655
Q ss_pred e
Q psy17863 89 P 89 (341)
Q Consensus 89 ~ 89 (341)
.
T Consensus 100 ~ 100 (877)
T KOG2063|consen 100 P 100 (877)
T ss_pred c
Confidence 4
|
|
| >PF14779 BBS1: Ciliary BBSome complex subunit 1 | Back alignment and domain information |
|---|
Probab=87.32 E-value=13 Score=29.34 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=47.0
Q ss_pred CCeEEEEEccC-------CCEEEEeecCCeEEEEeccccceeeeecCcccceeEEE-EEeCCCCCEEEEecCCCcEEEE
Q psy17863 209 EPIVDACFTRD-------CQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIE-CCLDSKDSQIFCGSSDGKIYKW 279 (341)
Q Consensus 209 ~~i~~~~~~~~-------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~dg~i~iw 279 (341)
..|+|++--.. -..|+.|+++|.|.+.|.+....+..+.-..-++.... -.+..-+-.++.++.||.|++.
T Consensus 177 t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 177 TVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 45677665331 24699999999999999988888777765555443221 1233123357777889988864
|
|
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=87.22 E-value=1.8 Score=21.21 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=21.1
Q ss_pred CEEEEecCCCcEEEEECCCCceeeee
Q psy17863 68 SQIASGASDKSVILWEVTTGQPVRRW 93 (341)
Q Consensus 68 ~~l~~~~~dg~i~iw~~~~~~~~~~~ 93 (341)
..++.++.+|.+..+|.++|+.+..+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36778888999999999998876553
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=86.85 E-value=2.1 Score=38.69 Aligned_cols=95 Identities=14% Similarity=0.236 Sum_probs=57.7
Q ss_pred CccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCc------eEEEeeccCeEEEEEccCCcceeeeEe
Q psy17863 97 ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDS------QIFCGSSDGKIYKWQLVDSSQISTLIH 170 (341)
Q Consensus 97 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~------~~~~~~~~g~i~~~d~~~~~~~~~~~~ 170 (341)
...++++.-+|.++.++.+..||.|.+|+........+.....++.+ -+++.++|....-|.-..--+.+.-..
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~~~tsdrr~la~~~dgvvqqqfdyn 93 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHGLVTATSDRRALAWKEDGVVQQQFDYN 93 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccceEEEeccchhheeeccCcchhhcccc
Confidence 45577888889999999999999999999877655444444444443 356667777777775433111111111
Q ss_pred eecCceEEEEEECCCCceEEE
Q psy17863 171 SVGKAVVNSLCSHPTRKHIMS 191 (341)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~ 191 (341)
........++...|..+.++.
T Consensus 94 dqsekefss~~cdptaqnvvg 114 (1636)
T KOG3616|consen 94 DQSEKEFSSILCDPTAQNVVG 114 (1636)
T ss_pred chhhhhccceecCchhhhhhh
Confidence 222334556666666554443
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=86.40 E-value=22 Score=31.28 Aligned_cols=87 Identities=8% Similarity=0.023 Sum_probs=43.4
Q ss_pred EEEEE---eCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCcc---E
Q psy17863 27 YCLTC---GSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASK---V 100 (341)
Q Consensus 27 ~l~t~---~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~---v 100 (341)
++++. ...+...+.|. +|.....+.........+...++|.+++... ..+..+|+. |+.+..+...... =
T Consensus 117 ~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~H 192 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFH 192 (477)
T ss_dssp EEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-
T ss_pred EEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccc
Confidence 44444 24556777774 4555555543322222266778888777655 778888874 6665554422211 2
Q ss_pred EEEEEcCCCcEEEEecC
Q psy17863 101 TCVKFNEDSSVVISGSQ 117 (341)
Q Consensus 101 ~~~~~~~~~~~l~~~~~ 117 (341)
..+...|+|++|+.+..
T Consensus 193 HD~~~l~nGn~L~l~~~ 209 (477)
T PF05935_consen 193 HDIDELPNGNLLILASE 209 (477)
T ss_dssp S-EEE-TTS-EEEEEEE
T ss_pred cccEECCCCCEEEEEee
Confidence 35677789999888774
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=86.16 E-value=21 Score=30.80 Aligned_cols=30 Identities=10% Similarity=0.422 Sum_probs=24.2
Q ss_pred cceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 297 AVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 297 ~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
..|.+++..+..+.|++.+ ++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999999999999 99999999975
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >KOG4659|consensus | Back alignment and domain information |
|---|
Probab=86.10 E-value=37 Score=33.55 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=14.9
Q ss_pred eeccceEEEEEcCCCcEEEEe
Q psy17863 294 VGKAVVNSLCSHPTRKHIMSA 314 (341)
Q Consensus 294 ~~~~~v~~~~~~~~~~~l~~~ 314 (341)
++-..+.+++.+|||...++-
T Consensus 659 A~lnsp~alaVsPdg~v~IAD 679 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIAD 679 (1899)
T ss_pred cccCCcceEEECCCCcEEEec
Confidence 455677888888888766554
|
|
| >KOG4460|consensus | Back alignment and domain information |
|---|
Probab=85.95 E-value=22 Score=31.12 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=20.7
Q ss_pred ceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 57 EVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 57 ~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
.|..+..++.|..++-++.+|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 56778889999999999999955544
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=85.79 E-value=21 Score=30.46 Aligned_cols=134 Identities=13% Similarity=0.089 Sum_probs=75.4
Q ss_pred EEEEEEcCCCcEEEEecCCCeEEEEEe--------cCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCc-----cee
Q psy17863 100 VTCVKFNEDSSVVISGSQDNTVMMWDV--------KSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSS-----QIS 166 (341)
Q Consensus 100 v~~~~~~~~~~~l~~~~~d~~i~iwd~--------~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~-----~~~ 166 (341)
...+..++++.+++.+.....++-||- .......+......+++.++..+..|.+..-+ ..++ ...
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~-d~G~~~~~~~f~ 319 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSK-GTGLTEEDFDFE 319 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEec-CCCCccccccee
Confidence 444566778877766654433333332 12222344444445566666666777765432 2222 122
Q ss_pred eeEeeecCceEEEEEECCCCceEEEeCCCceEEEE-------ccc--ccCCCCeEEEEEccCCCEEEEeecCCeEEEE
Q psy17863 167 TLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWT-------AEE--DYGQEPIVDACFTRDCQCILTCSTDECLRLF 235 (341)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-------~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 235 (341)
..........+..+.+.+++..++++..|.+.... ... ..-..+...+.|.++++.+++| .+|.|..|
T Consensus 320 ~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 320 EADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred ecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 22222122458889999999999998887665543 222 1234567889988887766555 56766544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 341 | ||||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 9e-27 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-26 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 3e-26 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 3e-26 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 3e-26 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 3e-26 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 3e-26 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 4e-26 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 4e-26 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-26 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 4e-26 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 4e-26 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 4e-26 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 4e-26 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 5e-26 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-25 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-25 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-22 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-09 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 2e-14 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 2e-11 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 2e-14 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 3e-11 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 2e-12 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 5e-08 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-12 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 4e-08 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 2e-12 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 4e-08 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-12 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 4e-08 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 3e-12 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 3e-07 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 4e-12 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 5e-08 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 6e-12 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 5e-07 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 3e-11 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 1e-09 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 3e-04 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-10 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 3e-10 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-10 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 4e-10 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 1e-10 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 6e-10 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 4e-04 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 1e-08 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 6e-04 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 3e-08 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 3e-08 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 9e-07 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 2e-07 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 2e-07 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 2e-07 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-07 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-07 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 2e-07 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 3e-07 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 4e-07 | ||
| 1pi6_A | 615 | Yeast Actin Interacting Protein 1 (Aip1), Orthorhom | 1e-06 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-06 | ||
| 1pgu_A | 615 | Yeast Actin Interacting Protein 1 (aip1), Se-met Pr | 9e-06 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 1e-05 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 2e-05 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 2e-05 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 2e-05 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 2e-05 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-05 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-05 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 2e-05 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 4e-05 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 2e-04 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 5e-05 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 5e-05 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 2e-04 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 2e-04 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 2e-04 | ||
| 3zwl_B | 369 | Structure Of Eukaryotic Translation Initiation Fact | 3e-04 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 4e-04 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 4e-04 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 4e-04 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 4e-04 | ||
| 4g56_B | 357 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 8e-04 | ||
| 4g56_B | 357 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 8e-04 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 9e-04 |
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357 | Back alignment and structure |
|
| >pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 341 | |||
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.97 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.97 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.97 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.96 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.96 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.96 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.96 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.96 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.96 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.95 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.95 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.95 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.95 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.94 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.94 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.94 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.94 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.94 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.94 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.94 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.93 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.92 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.92 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.92 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.92 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.92 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.92 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.91 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.91 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.91 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.91 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.9 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.9 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.89 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.89 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.87 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.87 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.87 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.87 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.86 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.86 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.85 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.84 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.84 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.84 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.83 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.83 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.82 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.81 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.81 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.81 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.8 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.8 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.8 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.8 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.79 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.78 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.76 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.76 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.75 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.75 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.74 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.73 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.72 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.72 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.71 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.7 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.69 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.69 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.69 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.68 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.68 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.67 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.67 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.66 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.66 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.66 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.62 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.62 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.6 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.59 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.59 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.58 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.58 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.58 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.57 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.56 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.55 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.54 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.53 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.45 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.44 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.44 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.43 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.43 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.42 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.42 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.41 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.4 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.39 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.38 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.35 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.34 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.32 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.31 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.31 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.29 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.29 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.29 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.28 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.27 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.25 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.24 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.24 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.23 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 99.22 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.21 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.2 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 99.16 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.15 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.15 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.14 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.12 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.11 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 99.1 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.1 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.09 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.03 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 99.03 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 99.03 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 99.0 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.0 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.9 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.85 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.76 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.76 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.74 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.74 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.72 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.7 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.62 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.61 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.59 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.55 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.55 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.5 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.45 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.43 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.42 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.41 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.39 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.37 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.34 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.33 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.31 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.3 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.28 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.21 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.21 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.16 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.15 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.14 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.1 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.1 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.1 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.1 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.04 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.04 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.96 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.95 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.89 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.89 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.88 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.83 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.8 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.78 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.76 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.74 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.68 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.66 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.62 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.61 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.61 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.56 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.55 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.55 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.45 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 97.43 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.38 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.37 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.34 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.32 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.29 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.28 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 97.22 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.03 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.99 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.98 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.89 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.8 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.77 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.76 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.71 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.53 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.52 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.23 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.12 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.9 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.85 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.8 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.46 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.41 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.19 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 94.83 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 93.86 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 92.44 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 91.63 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 89.95 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 89.84 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 86.02 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 83.89 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 83.76 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 83.57 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 83.47 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 80.17 |
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-53 Score=355.90 Aligned_cols=281 Identities=20% Similarity=0.333 Sum_probs=252.5
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECC
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 85 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 85 (341)
...+.+|.++|++++|+|++++|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcce
Q psy17863 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
+++++..+.+|...|.+++|+|++++|++++.|+.|++||++++. .+
T Consensus 181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~---------------------------------~~ 227 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY---------------------------------CV 227 (410)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC---------------------------------EE
T ss_pred CCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---------------------------------EE
Confidence 999999999999999999999999999999999999999987654 11
Q ss_pred eeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccC------------------
Q psy17863 166 STLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRD------------------ 219 (341)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~------------------ 219 (341)
..+. .+...+..+.++|++.++++++ ++.+++|++.... |...+.+++|+|+
T Consensus 228 ~~~~--~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (410)
T 1vyh_C 228 KTFT--GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305 (410)
T ss_dssp EEEE--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred EEEe--CCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccC
Confidence 1111 1344577888888888877765 5788888876542 6778899999886
Q ss_pred --CCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeecc
Q psy17863 220 --CQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA 297 (341)
Q Consensus 220 --~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (341)
+.+|++|+.|+.|++||+++++++..+.+|...+..+ +|+|++++|++|+.||.|++||+.+++++..+. .|..
T Consensus 306 ~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v--~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~--~h~~ 381 (410)
T 1vyh_C 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV--LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--AHEH 381 (410)
T ss_dssp --CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE--EECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--CCSS
T ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEE--EEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc--CCCC
Confidence 6789999999999999999999999999999999888 899999999999999999999999999999998 8999
Q ss_pred ceEEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 298 VVNSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 298 ~v~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
.|++++|+|++++|++++ |+.|++|+++
T Consensus 382 ~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 382 FVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999 9999999863
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-52 Score=337.64 Aligned_cols=288 Identities=21% Similarity=0.316 Sum_probs=249.9
Q ss_pred CCceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEE
Q psy17863 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 80 (341)
Q Consensus 1 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 80 (341)
|+++..++|++|.+.|++++|+|++++|++++.||+|++||+.+++.+..+..|..+|.+++|+|++++|++|+.|++|+
T Consensus 1 ~~l~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp -CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred CcceeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC---------CcCeEEeecCC--CceEEEee
Q psy17863 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS---------HHPIQCCLDSK--DSQIFCGS 149 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~--~~~~~~~~ 149 (341)
+||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++. ...+.++.+.+ +..+++++
T Consensus 81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999987652 23344444443 35777888
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEcc--CCCEEEEee
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTR--DCQCILTCS 227 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~ 227 (341)
.|+.|++||++.......+... +...+..+.++| ++.+|++++
T Consensus 161 ~D~~v~iwd~~~~~~~~~~~~~-----------------------------------~~~~v~~~~~~~~~~~~~l~s~s 205 (304)
T 2ynn_A 161 LDRTVKVWSLGQSTPNFTLTTG-----------------------------------QERGVNYVDYYPLPDKPYMITAS 205 (304)
T ss_dssp TTSEEEEEETTCSSCSEEEECC-----------------------------------CTTCEEEEEECCSTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCccceeccC-----------------------------------CcCcEEEEEEEEcCCCCEEEEEc
Confidence 8888888887665543333211 234566677765 678999999
Q ss_pred cCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCC
Q psy17863 228 TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 228 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
.|+.|++||+++++++..+.+|...+..+ +|+|++++|++|+.||+|++||+.+++.+..+. .|...+.+++|+|+
T Consensus 206 ~D~~i~iWd~~~~~~~~~~~~h~~~v~~~--~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--~~~~~~~~~~~~~~ 281 (304)
T 2ynn_A 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFA--VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN--VGLERSWCIATHPT 281 (304)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEE--EECSSSSEEEEEETTSCEEEEETTTCCEEEEEC--CSSSSEEEEEECTT
T ss_pred CCCeEEEEeCCCCccceeeCCCCCCEEEE--EECCCCCEEEEEcCCCeEEEEECCCCceeeecc--CCCccEEEEEECCC
Confidence 99999999999999999999999999887 899999999999999999999999999999988 78889999999998
Q ss_pred Cc--EEEEeCCCcEEEEEcccc
Q psy17863 308 RK--HIMSACGNNVKLWTAEED 327 (341)
Q Consensus 308 ~~--~l~~~~d~~i~vw~~~~~ 327 (341)
+. ++++++++.+.+|++.++
T Consensus 282 ~~~~~~asg~~~g~~~~~~~~~ 303 (304)
T 2ynn_A 282 GRKNYIASGFDNGFTVLSLGND 303 (304)
T ss_dssp CGGGCEEEEETTEEEEEECC--
T ss_pred CCceEEEEecCCceEEEEeccC
Confidence 75 577777778999988764
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-52 Score=368.12 Aligned_cols=318 Identities=18% Similarity=0.243 Sum_probs=269.2
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec-------CcccceeEEEEecCCCEEEEecC
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-------GHAHEVNDATAACDSSQIASGAS 75 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~ 75 (341)
.++++++.+|.+.|++++|+|+|++||+|+.|++|++||..+++.+..+. +|.+.|.+++|+|++++|++++.
T Consensus 180 ~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~ 259 (611)
T 1nr0_A 180 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 259 (611)
T ss_dssp BEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET
T ss_pred CeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeC
Confidence 56778999999999999999999999999999999999999998888874 79999999999999999999999
Q ss_pred CCcEEEEECCCCceee-------------------------------------------eecccCccEEEEEEcCCCcEE
Q psy17863 76 DKSVILWEVTTGQPVR-------------------------------------------RWREHASKVTCVKFNEDSSVV 112 (341)
Q Consensus 76 dg~i~iw~~~~~~~~~-------------------------------------------~~~~~~~~v~~~~~~~~~~~l 112 (341)
|++|++||+.+++++. .+.+|...|++++|+|++++|
T Consensus 260 D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l 339 (611)
T 1nr0_A 260 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTL 339 (611)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEE
Confidence 9999999998876543 334788999999999999999
Q ss_pred EEecCCCeEEEEEecCCC---------CcCeEEeecCCCceEEEeeccCeEEEEEccCCccee-------------e---
Q psy17863 113 ISGSQDNTVMMWDVKSRS---------HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS-------------T--- 167 (341)
Q Consensus 113 ~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~-------------~--- 167 (341)
++++.|+.|++||+.++. ...+..+.+.+++.+++++.|+.+++|+........ .
T Consensus 340 ~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (611)
T 1nr0_A 340 FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV 419 (611)
T ss_dssp EEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEE
T ss_pred EEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEE
Confidence 999999999999988653 234555566677899999999999999976533210 0
Q ss_pred ----------------------eEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccc--------cCCCCeEEEEE
Q psy17863 168 ----------------------LIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED--------YGQEPIVDACF 216 (341)
Q Consensus 168 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~--------~~~~~i~~~~~ 216 (341)
.........+.+++++|+++++++++ ++.+++|++... .|...|.+++|
T Consensus 420 s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~f 499 (611)
T 1nr0_A 420 SADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAF 499 (611)
T ss_dssp CTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEE
T ss_pred eCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEE
Confidence 00001234578999999999999887 489999998652 37889999999
Q ss_pred ccCCCEEEEeecCCeEEEEeccc-cceeee--ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc-e-EEEE
Q psy17863 217 TRDCQCILTCSTDECLRLFDKAT-GELLEE--YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ-I-STLI 291 (341)
Q Consensus 217 ~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~-~~~~ 291 (341)
+|+|++|++++.|+.|++||+.+ ++.... +.+|...|..+ +|+|++++|++|+.|++|++|++.+++. . ..+.
T Consensus 500 spdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v--~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~ 577 (611)
T 1nr0_A 500 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV--SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG 577 (611)
T ss_dssp CTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEE--EECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT
T ss_pred CCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEE--EECCCCCEEEEEECCCcEEEEECCCcccccchhhc
Confidence 99999999999999999999987 665544 34599999888 8999999999999999999999988753 3 3444
Q ss_pred eeee-ccceEEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 292 HSVG-KAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 292 ~~~~-~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
+| ...|.+++|+|+++ |++++ |++|++|+++
T Consensus 578 --~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 578 --AHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp --SSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred --cCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 68 78999999999999 99999 9999999973
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-52 Score=337.80 Aligned_cols=282 Identities=18% Similarity=0.293 Sum_probs=250.0
Q ss_pred eeeEEeeeCCcEEEEEEccC----CCEEEEEeCCCeEEEEcCCCcc--eeeEecCcccceeEEEEecCCCEEEEecCCCc
Q psy17863 5 CVQTIDCKQGAIRAVRFNVD----GSYCLTCGSDKKIKLWNPYRNL--LLKTYGGHAHEVNDATAACDSSQIASGASDKS 78 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~----~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 78 (341)
+.+.+++|.++|++++|+|+ +++|++|+.|++|++|++.+++ ....+.+|...|.+++|++++.++++++.|++
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 44677899999999999985 6799999999999999987664 34568899999999999999999999999999
Q ss_pred EEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 79 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
|++||+.+++.+..+..|...+.+++|+|++++|++++.||.|++|++++++.
T Consensus 104 i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~--------------------------- 156 (321)
T 3ow8_A 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK--------------------------- 156 (321)
T ss_dssp EEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE---------------------------
T ss_pred EEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce---------------------------
Confidence 99999999999999999999999999999999999999999999999876541
Q ss_pred ccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCC
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDE 230 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~ 230 (341)
...+ ..+...+.+++|+|+++++++++ ++.+++||+.... +..+|.+++|+|++++|++++.|+
T Consensus 157 ------~~~~--~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg 228 (321)
T 3ow8_A 157 ------EYSL--DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 228 (321)
T ss_dssp ------EEEE--ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTS
T ss_pred ------eEEe--cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCC
Confidence 1111 11334588999999999988876 5889999987643 778999999999999999999999
Q ss_pred eEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcE
Q psy17863 231 CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKH 310 (341)
Q Consensus 231 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 310 (341)
.|++||+++++....+.+|...+..+ +|+|++++|++++.|++|++||+.+++++..+. .|...|.+++|+|++++
T Consensus 229 ~i~iwd~~~~~~~~~~~~h~~~v~~~--~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~--~h~~~v~~v~~s~~g~~ 304 (321)
T 3ow8_A 229 YIKIYDVQHANLAGTLSGHASWVLNV--AFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFF--DHQDQVWGVKYNGNGSK 304 (321)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEE--EECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSE
T ss_pred eEEEEECCCcceeEEEcCCCCceEEE--EECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEc--CCCCcEEEEEECCCCCE
Confidence 99999999999999999999999888 899999999999999999999999999999988 89999999999999999
Q ss_pred EEEeC-CCcEEEEEcc
Q psy17863 311 IMSAC-GNNVKLWTAE 325 (341)
Q Consensus 311 l~~~~-d~~i~vw~~~ 325 (341)
|++++ |+.|++||.+
T Consensus 305 l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 305 IVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEETTCCEEEEECC
T ss_pred EEEEeCCCeEEEEeCC
Confidence 99999 9999999964
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=364.01 Aligned_cols=320 Identities=14% Similarity=0.241 Sum_probs=268.2
Q ss_pred eeeEEeeeCCcEEEEEEccCCC-EEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
+..++.+|.+.|++++|+|+++ .|++|+.|++|++||..+++....+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd 218 (611)
T 1nr0_A 139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 218 (611)
T ss_dssp BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEE
Confidence 4567889999999999999987 599999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeec-------ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC-------------------------
Q psy17863 84 VTTGQPVRRWR-------EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH------------------------- 131 (341)
Q Consensus 84 ~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------------------------- 131 (341)
+.+++.+..+. +|.+.|.+++|+|++++|++++.|++|++||+++++.
T Consensus 219 ~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (611)
T 1nr0_A 219 GVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV 298 (611)
T ss_dssp TTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEE
T ss_pred CCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEE
Confidence 99999888774 7999999999999999999999999999999875421
Q ss_pred --------------------------cCeEEe-ecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECC
Q psy17863 132 --------------------------HPIQCC-LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 184 (341)
Q Consensus 132 --------------------------~~~~~~-~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (341)
..+..+ ..+++..+++++.|++|++||+.+++....+. ..+...+.++++++
T Consensus 299 s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~-~~h~~~v~~~~~s~ 377 (611)
T 1nr0_A 299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP-DVHATMITGIKTTS 377 (611)
T ss_dssp EEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS-CSCSSCEEEEEECT
T ss_pred EEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecc-cCCcceEEEEEECC
Confidence 112222 33456689999999999999999876654432 23456688888888
Q ss_pred CCceEEEeCCCceEEEEccccc-----------------------------------------------CCCCeEEEEEc
Q psy17863 185 TRKHIMSACGNNVKLWTAEEDY-----------------------------------------------GQEPIVDACFT 217 (341)
Q Consensus 185 ~~~~~~~~~~~~i~~~~~~~~~-----------------------------------------------~~~~i~~~~~~ 217 (341)
++.++..+.++.+++|+..... +...+.+++|+
T Consensus 378 ~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~s 457 (611)
T 1nr0_A 378 KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALS 457 (611)
T ss_dssp TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEEC
T ss_pred CCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEe
Confidence 8777777777888888754321 23457899999
Q ss_pred cCCCEEEEeecCCeEEEEeccccce--eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC-CCceEEEEeee
Q psy17863 218 RDCQCILTCSTDECLRLFDKATGEL--LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD-SSQISTLIHSV 294 (341)
Q Consensus 218 ~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~ 294 (341)
|+|++|++|+.|+.|++||+.+++. +.. .+|...+..+ +|+|++++|++++.|++|++|++.+ ++.........
T Consensus 458 pdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v--~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~ 534 (611)
T 1nr0_A 458 NDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSV--AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF 534 (611)
T ss_dssp TTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEE--EECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCC
T ss_pred CCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEE--EECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeee
Confidence 9999999999999999999987643 334 6788888888 8999999999999999999999987 54443311224
Q ss_pred eccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 295 GKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 295 ~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
|...|.+++|+||+++||+++ |++|++|+++++.
T Consensus 535 H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred cccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 899999999999999999999 9999999998654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-51 Score=334.59 Aligned_cols=282 Identities=20% Similarity=0.352 Sum_probs=247.3
Q ss_pred CceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
+.+..++|++|.++|++++|+|++++|++|+.||+|++||..+++.+..+..|...|.+++|+|++++|++++.|+.|++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCc----eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 82 WEVTTGQ----PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 82 w~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
|++.+++ ....+.+|...|.++.|++++. +++++.|+.|++||+++++
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~--------------------------- 175 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQ--------------------------- 175 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTE---------------------------
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCc---------------------------
Confidence 9998753 4566788999999999998775 8888899999999987543
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecC
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTD 229 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d 229 (341)
....+ ..+...+.+++++|+++++++++ ++.+++||+.... |...|.+++|+|++++|++++.|
T Consensus 176 ------~~~~~--~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d 247 (340)
T 1got_B 176 ------QTTTF--TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDD 247 (340)
T ss_dssp ------EEEEE--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ------EEEEE--cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCC
Confidence 11111 12445689999999999888776 5899999987643 77899999999999999999999
Q ss_pred CeEEEEeccccceeeeecCc--ccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCC
Q psy17863 230 ECLRLFDKATGELLEEYKGH--KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 230 ~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
+.|++||+++++.+..+..+ ...+..+ +|+|++++|++|+.||.|++||+.+++.+..+. +|..+|.+++|+|+
T Consensus 248 ~~v~iwd~~~~~~~~~~~~~~~~~~v~~~--~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~--~h~~~v~~~~~s~d 323 (340)
T 1got_B 248 ATCRLFDLRADQELMTYSHDNIICGITSV--SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA--GHDNRVSCLGVTDD 323 (340)
T ss_dssp SCEEEEETTTTEEEEEECCTTCCSCEEEE--EECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEECTT
T ss_pred CcEEEEECCCCcEEEEEccCCcccceEEE--EECCCCCEEEEECCCCeEEEEEcccCcEeeEee--cCCCcEEEEEEcCC
Confidence 99999999988877776533 2356666 899999999999999999999999999998888 89999999999999
Q ss_pred CcEEEEeC-CCcEEEEE
Q psy17863 308 RKHIMSAC-GNNVKLWT 323 (341)
Q Consensus 308 ~~~l~~~~-d~~i~vw~ 323 (341)
+++|++++ |+.|++|+
T Consensus 324 g~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 324 GMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSCEEEEETTSCEEEEC
T ss_pred CCEEEEEcCCccEEecC
Confidence 99999999 99999996
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-50 Score=330.96 Aligned_cols=281 Identities=16% Similarity=0.288 Sum_probs=243.6
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
.+..++|++|.++|++++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|++.++++++.|+.+++|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC------ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------cCeEEeecC---CCceE
Q psy17863 83 EVTTG------QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HPIQCCLDS---KDSQI 145 (341)
Q Consensus 83 ~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~---~~~~~ 145 (341)
++... .....+..|...|.+++|+|++..|++++.|++|++||+++++. ..+.++... ++..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 98654 34556678999999999999999999999999999999987652 233333322 34689
Q ss_pred EEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEE
Q psy17863 146 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILT 225 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 225 (341)
++++.||.|++||+++++....+.. |...|.+++|+|++++|++
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~------------------------------------h~~~v~~v~~~p~~~~l~s 257 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFET------------------------------------HESDVNSVRYYPSGDAFAS 257 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECC------------------------------------CSSCEEEEEECTTSSEEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEecC------------------------------------CCCCeEEEEEeCCCCEEEE
Confidence 9999999999999988765544321 3567889999999999999
Q ss_pred eecCCeEEEEeccccceeeeecCcc--cceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEE
Q psy17863 226 CSTDECLRLFDKATGELLEEYKGHK--SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLC 303 (341)
Q Consensus 226 ~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 303 (341)
++.|++|++||++.++.+..+..+. ..+..+ +|+|++++|++|+.|+.|++||+.+++.+..+. +|...|++++
T Consensus 258 ~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~--~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~--~h~~~v~~l~ 333 (354)
T 2pbi_B 258 GSDDATCRLYDLRADREVAIYSKESIIFGASSV--DFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF--GHENRVSTLR 333 (354)
T ss_dssp EETTSCEEEEETTTTEEEEEECCTTCCSCEEEE--EECTTSSEEEEEETTSCEEEEETTTCSEEEEEC--CCSSCEEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEEcCCCcccceeEE--EEeCCCCEEEEEECCCcEEEEECCCCceEEEEE--CCCCcEEEEE
Confidence 9999999999999888777665443 244444 899999999999999999999999999988887 8999999999
Q ss_pred EcCCCcEEEEeC-CCcEEEEE
Q psy17863 304 SHPTRKHIMSAC-GNNVKLWT 323 (341)
Q Consensus 304 ~~~~~~~l~~~~-d~~i~vw~ 323 (341)
|+|++++|++++ |+.|++|+
T Consensus 334 ~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 334 VSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ECTTSSCEEEEETTSEEEEEC
T ss_pred ECCCCCEEEEEcCCCCEEecC
Confidence 999999999999 99999995
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-50 Score=324.52 Aligned_cols=286 Identities=28% Similarity=0.527 Sum_probs=252.8
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
++...++.+|.++|++++|+|++++|++++.||.|++|+..+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
|+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~------------------------------- 141 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC------------------------------- 141 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-------------------------------
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-------------------------------
Confidence 9999999999999999999999999999999999999999999876541
Q ss_pred cceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc--------CCCCeEEEEEccCCCEEEEeecCCeEE
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY--------GQEPIVDACFTRDCQCILTCSTDECLR 233 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~i~ 233 (341)
...+ ..+...+.+++++|+++++++++ ++.+++||+.... +..++..++|+|+++++++++.|+.|+
T Consensus 142 --~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 217 (312)
T 4ery_A 142 --LKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217 (312)
T ss_dssp --EEEE--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEE
T ss_pred --EEEe--cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence 1111 11345688899999998887776 5889999987543 456799999999999999999999999
Q ss_pred EEeccccceeeeecCcccceeEEEEEe-CCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEE
Q psy17863 234 LFDKATGELLEEYKGHKSGDFRIECCL-DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 312 (341)
Q Consensus 234 i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 312 (341)
+||+++++.+..+.+|......+...+ .+++.+|++|+.||.|++||+.+++.+..+. +|...|.+++|+|++++|+
T Consensus 218 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~ 295 (312)
T 4ery_A 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ--GHTDVVISTACHPTENIIA 295 (312)
T ss_dssp EEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECSSSSEEE
T ss_pred EEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhh--ccCCcEEEEeecCcCCceE
Confidence 999999999999998887655443344 3678899999999999999999999998888 8999999999999999999
Q ss_pred EeC---CCcEEEEEcc
Q psy17863 313 SAC---GNNVKLWTAE 325 (341)
Q Consensus 313 ~~~---d~~i~vw~~~ 325 (341)
+++ |+.|++|+.+
T Consensus 296 s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 296 SAALENDKTIKLWKSD 311 (312)
T ss_dssp EEECTTTCCEEEEECC
T ss_pred EEEccCCccEEEecCC
Confidence 884 8999999964
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-50 Score=330.02 Aligned_cols=298 Identities=19% Similarity=0.326 Sum_probs=241.8
Q ss_pred CceeeeEEeeeCC-cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceee---EecCcccceeEEEEecCCCEEEEecCCC
Q psy17863 2 EYTCVQTIDCKQG-AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLK---TYGGHAHEVNDATAACDSSQIASGASDK 77 (341)
Q Consensus 2 ~~~~~~~l~~h~~-~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg 77 (341)
++++++++++|.+ .|.+++|+|+|++||+|+.|++|+|||+.++.... ...+|...|.+++|+|++++|++++.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 4678899999998 99999999999999999999999999988775432 2368999999999999999999999999
Q ss_pred cEEEEECCCC--ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEE
Q psy17863 78 SVILWEVTTG--QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIY 155 (341)
Q Consensus 78 ~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 155 (341)
++++|++..+ +.+..+.+|...|.+++|+|++++|++++.|+.|++||++......
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~---------------------- 141 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE---------------------- 141 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE----------------------
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE----------------------
Confidence 9999998876 4577889999999999999999999999999999999997643100
Q ss_pred EEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccc---------cCCCCeEEEEEccCCCEEEE
Q psy17863 156 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED---------YGQEPIVDACFTRDCQCILT 225 (341)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~ 225 (341)
.... ...+...+.+++|+|+++++++++ ++.+++|+.... .|...|.+++|+|++++|++
T Consensus 142 --------~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s 211 (345)
T 3fm0_A 142 --------CVSV--LNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS 211 (345)
T ss_dssp --------EEEE--ECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred --------EEEE--ecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEE
Confidence 0001 112445689999999999988876 589999998653 27889999999999999999
Q ss_pred eecCCeEEEEecccc---------------ceeeeecC-cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCC----
Q psy17863 226 CSTDECLRLFDKATG---------------ELLEEYKG-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS---- 285 (341)
Q Consensus 226 ~~~d~~i~i~d~~~~---------------~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---- 285 (341)
++.|++|++||.... +++..+.+ |...+..+ +|++++..|++++.|+.|++|+...+.
T Consensus 212 ~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v--~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~ 289 (345)
T 3fm0_A 212 CSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDI--AWCQLTGALATACGDDAIRVFQEDPNSDPQQ 289 (345)
T ss_dssp EETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEE--EECTTTCCEEEEETTSCEEEEEECTTSCTTS
T ss_pred EeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEE--EEecCCCEEEEEeCCCeEEEEEeCCCCCcce
Confidence 999999999996422 23344444 77778877 899999999999999999999987643
Q ss_pred ceEEEE---eeeeccceEEEEEcCCCc-EEEEeC-CCcEEEEEcccccCCccc
Q psy17863 286 QISTLI---HSVGKAVVNSLCSHPTRK-HIMSAC-GNNVKLWTAEEDYGQAGL 333 (341)
Q Consensus 286 ~~~~~~---~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~vw~~~~~~~~~~~ 333 (341)
+...+. ..+|...|++++|+|++. +||+++ ||+|++|++.+.......
T Consensus 290 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 290 PTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp CCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred eeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 122221 126889999999999984 999999 999999999887655443
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-49 Score=349.15 Aligned_cols=313 Identities=27% Similarity=0.450 Sum_probs=270.2
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
.+..++|++|++.|++++|+|||++||+|+.|+.|+|||. +++++.++.+|...|++++|+|++++|++++.|++|++|
T Consensus 6 ~~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vW 84 (577)
T 2ymu_A 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 84 (577)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cEEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 3566789999999999999999999999999999999995 788899999999999999999999999999999999999
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------------------------------
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-------------------------------- 130 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------------------------------- 130 (341)
|. +++.+..+.+|...|.+++|+|++++|++++.|+.+++|+.....
T Consensus 85 d~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 163 (577)
T 2ymu_A 85 NR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 163 (577)
T ss_dssp ET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred EC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccce
Confidence 95 678889999999999999999999999999999999999965321
Q ss_pred ----------------CcCeE-EeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC
Q psy17863 131 ----------------HHPIQ-CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 193 (341)
Q Consensus 131 ----------------~~~~~-~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (341)
...+. ....+.+..+++++.|+.+++||.. .+....+.. +...+.+++++|+++.+++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~~~--~~~~v~~~~~s~dg~~l~~~~ 240 (577)
T 2ymu_A 164 KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTG--HSSSVRGVAFSPDGQTIASAS 240 (577)
T ss_dssp EEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEEEC--CSSCEEEEEECTTSSCEEEEE
T ss_pred eccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC-CcEEEEEec--CCCCEEEEEECCCCCEEEEEe
Confidence 01111 2233445578999999999999953 444444433 456799999999999888776
Q ss_pred -CCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCE
Q psy17863 194 -GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ 266 (341)
Q Consensus 194 -~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (341)
++.+++|+..... +...+.+++|+|+++.+++++.|+.|++||.. ++.+..+.+|...+..+ +++|++++
T Consensus 241 ~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~--~~~~~~~~ 317 (577)
T 2ymu_A 241 DDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGV--AFSPDGQT 317 (577)
T ss_dssp TTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEE--EECTTSSE
T ss_pred CCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEE--EECCCCCE
Confidence 5899999975432 77899999999999999999999999999964 67788899999999887 89999999
Q ss_pred EEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 267 IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 267 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
+++++.||.|++||.. ++.+..+. .|...|.+++|+|++++|++++ |+.|++|+...
T Consensus 318 l~t~~~d~~i~~w~~~-~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~ 375 (577)
T 2ymu_A 318 IASASDDKTVKLWNRN-GQHLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 375 (577)
T ss_dssp EEEEETTSCEEEEETT-SCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC
T ss_pred EEEEeCCCeEEEEeCC-CCeeEEEe--CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC
Confidence 9999999999999964 55566666 7899999999999999999999 99999999654
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-49 Score=346.76 Aligned_cols=311 Identities=27% Similarity=0.443 Sum_probs=272.4
Q ss_pred CceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
+.+++..+.+|...|++++|+|++++|++++.|+.|++|+. +++.+..+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 251 ~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~ 329 (577)
T 2ymu_A 251 NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 329 (577)
T ss_dssp TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEE
Confidence 34677889999999999999999999999999999999996 56778889999999999999999999999999999999
Q ss_pred EECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCC-------CCcCeEEee-cCCCceEEEeeccCe
Q psy17863 82 WEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR-------SHHPIQCCL-DSKDSQIFCGSSDGK 153 (341)
Q Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~-~~~~~~~~~~~~~g~ 153 (341)
||.. ++.+..+..|...+.+++|+|++++|++++.|+.+++||.... ....+..+. .+++..+++++.|+.
T Consensus 330 w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~ 408 (577)
T 2ymu_A 330 WNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 408 (577)
T ss_dssp EETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred EeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCE
Confidence 9975 4556778889999999999999999999999999999996532 123344444 455668999999999
Q ss_pred EEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc------CCCCeEEEEEccCCCEEEEe
Q psy17863 154 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTC 226 (341)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~ 226 (341)
|++||.. .+.+..+.. +...+.+++++|+++++++++ ++.+++|+..... |..++.+++|+|++++|+++
T Consensus 409 v~~~~~~-~~~~~~~~~--~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~ 485 (577)
T 2ymu_A 409 VKLWNRN-GQLLQTLTG--HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 485 (577)
T ss_dssp EEEECTT-CCEEEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEE
T ss_pred EEEEeCC-CCEEEEecC--CCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 9999953 444444433 456799999999999998876 5899999976432 78899999999999999999
Q ss_pred ecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcC
Q psy17863 227 STDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 306 (341)
Q Consensus 227 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 306 (341)
+.|+.|++||. +++.+..+.+|...+..+ +|+|++++|++++.||.|++||. +++++..+. +|...|++++|+|
T Consensus 486 ~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l--~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--~h~~~v~~~~fs~ 559 (577)
T 2ymu_A 486 SDDKTVKLWNR-NGQLLQTLTGHSSSVRGV--AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVWGVAFSP 559 (577)
T ss_dssp ETTSEEEEEET-TSCEEEEEECCSSCEEEE--EECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--CCSSCEEEEEECT
T ss_pred eCCCEEEEEcC-CCCEEEEEeCCCCCEEEE--EEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--CCCCCEEEEEEcC
Confidence 99999999995 688899999999999888 89999999999999999999995 788888888 8999999999999
Q ss_pred CCcEEEEeC-CCcEEEEE
Q psy17863 307 TRKHIMSAC-GNNVKLWT 323 (341)
Q Consensus 307 ~~~~l~~~~-d~~i~vw~ 323 (341)
|+++|++++ |++|++||
T Consensus 560 dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 560 DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEeCCCEEEEeC
Confidence 999999999 99999997
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=323.25 Aligned_cols=285 Identities=19% Similarity=0.322 Sum_probs=238.8
Q ss_pred ceeeeEEeeeCCcEEEEEEccCC-CEEEEEeCCCeEEEEcCCC-----cceeeEecCcccceeEEEEecCCCEEEEecCC
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDG-SYCLTCGSDKKIKLWNPYR-----NLLLKTYGGHAHEVNDATAACDSSQIASGASD 76 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 76 (341)
+.+..+|++|.++|++++|+|++ ++|++|+.|++|++|++.. +.++..+.+|...|.+++|+|++++|++++.|
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 35677999999999999999965 8999999999999999764 34567889999999999999999999999999
Q ss_pred CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC-------CcCeEEeecCC-------C
Q psy17863 77 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-------HHPIQCCLDSK-------D 142 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~~~~~~-------~ 142 (341)
++|++||+++++.+..+.+|...|.+++|+|++.+|++++.|+.|++||++... ...+..+...+ .
T Consensus 87 ~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 87 KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------C
T ss_pred CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999987532 12233333322 2
Q ss_pred ceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCE
Q psy17863 143 SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQC 222 (341)
Q Consensus 143 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (341)
..+++++.|+.|++||+++.+....+. .|..+|.+++|+|++++
T Consensus 167 ~~l~s~~~d~~i~~wd~~~~~~~~~~~------------------------------------~h~~~v~~~~~sp~g~~ 210 (319)
T 3frx_A 167 VTIISAGNDKMVKAWNLNQFQIEADFI------------------------------------GHNSNINTLTASPDGTL 210 (319)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEEC------------------------------------CCCSCEEEEEECTTSSE
T ss_pred cEEEEEeCCCEEEEEECCcchhheeec------------------------------------CCCCcEEEEEEcCCCCE
Confidence 368888889999999887754433322 14677899999999999
Q ss_pred EEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEe------eeec
Q psy17863 223 ILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH------SVGK 296 (341)
Q Consensus 223 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~ 296 (341)
|++++.|+.|++||+.+++.+..+..+ ..+..+ +|+|++.++++++.+ .+++|++.....+..+.. ..+.
T Consensus 211 l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~--~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~ 286 (319)
T 3frx_A 211 IASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSL--AFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAE 286 (319)
T ss_dssp EEEEETTCEEEEEETTTTEEEEEEECC-SCEEEE--EECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEE--EEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcC
Confidence 999999999999999999998888765 456666 899999999988755 599999987766665541 1345
Q ss_pred cceEEEEEcCCCcEEEEeC-CCcEEEEEcccc
Q psy17863 297 AVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 297 ~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~ 327 (341)
..+.+++|+|||++|++++ |+.|++|++.+.
T Consensus 287 ~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 287 PHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred cceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 6799999999999999999 999999998763
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-50 Score=337.35 Aligned_cols=288 Identities=19% Similarity=0.333 Sum_probs=243.4
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
..+.++|++|.+.|++++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|++++|++|+.|+.+++|
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw 135 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF 135 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCc-------eeeeecccCccEEEEEEcCC-CcEEEEecCCCeEEEEEecCCCC-------------cCeEEeec-C
Q psy17863 83 EVTTGQ-------PVRRWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSH-------------HPIQCCLD-S 140 (341)
Q Consensus 83 ~~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~-------------~~~~~~~~-~ 140 (341)
++.+.. ....+.+|.+.|.++.|.|+ +..|++++.|++|++||+++++. ..+..+.. +
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 987532 34567889999999999996 55799999999999999987542 12222222 2
Q ss_pred -CCceEEEeeccCeEEEEEccCC-cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEcc
Q psy17863 141 -KDSQIFCGSSDGKIYKWQLVDS-SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTR 218 (341)
Q Consensus 141 -~~~~~~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 218 (341)
.+..+++|+.|+.|++||++.. +....+. .|...|.+++|+|
T Consensus 216 ~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~------------------------------------~h~~~v~~v~~~p 259 (380)
T 3iz6_a 216 LNANMFISGSCDTTVRLWDLRITSRAVRTYH------------------------------------GHEGDINSVKFFP 259 (380)
T ss_dssp SSCCEEEEEETTSCEEEEETTTTCCCCEEEC------------------------------------CCSSCCCEEEECT
T ss_pred CCCCEEEEEECCCeEEEEECCCCCcceEEEC------------------------------------CcCCCeEEEEEec
Confidence 4567888888889999988743 2222221 1467799999999
Q ss_pred CCCEEEEeecCCeEEEEeccccceeeeecCccc-------ceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 219 DCQCILTCSTDECLRLFDKATGELLEEYKGHKS-------GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 219 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
++++|++++.|++|++||+++++.+..+..+.. .+..+ +|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus 260 ~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~ 337 (380)
T 3iz6_a 260 DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV--AFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLG 337 (380)
T ss_dssp TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEE--EECSSSSEEEEECTTSCEEEEETTTCCEEEEEC
T ss_pred CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEE--EECCCCCEEEEEECCCCEEEEECCCCceEEEEe
Confidence 999999999999999999999988887765432 25555 899999999999999999999999988887773
Q ss_pred --eeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 292 --HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 292 --~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
..+|...|++++|+|++++|++|+ |++|++|++....
T Consensus 338 ~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 338 TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred cccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 127899999999999999999999 9999999998653
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-49 Score=335.49 Aligned_cols=308 Identities=17% Similarity=0.226 Sum_probs=268.1
Q ss_pred eeeCCcEEEEEEccCCC-EEEEEeCCCeEEEEcC----CCcc------eeeEecC----------cccceeEEEEecCCC
Q psy17863 10 DCKQGAIRAVRFNVDGS-YCLTCGSDKKIKLWNP----YRNL------LLKTYGG----------HAHEVNDATAACDSS 68 (341)
Q Consensus 10 ~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iw~~----~~~~------~~~~~~~----------~~~~v~~~~~~~~~~ 68 (341)
..|.++|++++|+|+++ +||+|+.||.|++|++ .+++ ....+.. |...|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34669999999999999 9999999999999999 8877 4555544 678999999999999
Q ss_pred EEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------cC-------
Q psy17863 69 QIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HP------- 133 (341)
Q Consensus 69 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~------- 133 (341)
+|++++.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.|+.|++||+++++. ..
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 200 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE 200 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence 999999999999999 67888889999999999999999999999999999999999977542 11
Q ss_pred --------eEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccc
Q psy17863 134 --------IQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 204 (341)
Q Consensus 134 --------~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~ 204 (341)
+..+.+.+++.+++++.+|.|++||+.+.+....+.. +...+.+++++|+++++++++ ++.+++|++..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 278 (425)
T 1r5m_A 201 NHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIG--HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN 278 (425)
T ss_dssp -----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECC--CSSCEEEEEEETTTTEEEEEETTSCEEEECSSS
T ss_pred cccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeecc--CCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 4444455677899999999999999999877766643 456799999999999888877 58999999876
Q ss_pred cc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEE
Q psy17863 205 DY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIY 277 (341)
Q Consensus 205 ~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 277 (341)
.. +...+.+++|+|++ ++++++.|+.|++||+++++.+..+..|...+..+ +++|++++|++++.||.|+
T Consensus 279 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~--~~s~~~~~l~~~~~dg~i~ 355 (425)
T 1r5m_A 279 GNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAG--RISQDGQKYAVAFMDGQVN 355 (425)
T ss_dssp BSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEE--EECTTSSEEEEEETTSCEE
T ss_pred CccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEE--EEcCCCCEEEEEECCCeEE
Confidence 43 77899999999999 99999999999999999999999999999988887 8999999999999999999
Q ss_pred EEeeeCCC--------------------ceEEEEeeeecc--ceEEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 278 KWQLVDSS--------------------QISTLIHSVGKA--VVNSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 278 iwd~~~~~--------------------~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
+||+.+++ .+..+. .|.. .|++++|+|++++|++++ ||.|++|+++
T Consensus 356 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 356 VYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ--SSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEECHHHHC--------------CEECCEEEEEC--CTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEECCCCccceeeeecccccccCcccchhhhhhc--CcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 99999887 677776 6755 999999999999999999 9999999986
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=321.65 Aligned_cols=285 Identities=18% Similarity=0.276 Sum_probs=231.2
Q ss_pred ceeeeEEeeeCCcEEEEEE-----cc-CCCEEEEEeCCCeEEEEcCCCc-------ceeeEecCcccceeEEEEecCCCE
Q psy17863 3 YTCVQTIDCKQGAIRAVRF-----NV-DGSYCLTCGSDKKIKLWNPYRN-------LLLKTYGGHAHEVNDATAACDSSQ 69 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~-----~~-~~~~l~t~~~dg~i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~ 69 (341)
+++..+|++|.+.|++++| ++ ++++|++|+.|++|++||+.+. .+...+.+|...|.+++|+|++.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 4577899999999999999 77 8999999999999999998643 456778899999999999999999
Q ss_pred EEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCC----------CCcCeEEeec
Q psy17863 70 IASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR----------SHHPIQCCLD 139 (341)
Q Consensus 70 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~----------~~~~~~~~~~ 139 (341)
+++++.|++|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+... ....+.++.+
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeee
Confidence 999999999999999999999999999999999999999999999999999999998632 1223444444
Q ss_pred CCC-----------ceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCC
Q psy17863 140 SKD-----------SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQ 208 (341)
Q Consensus 140 ~~~-----------~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 208 (341)
.+. ..+++++.||.|++||.. .+....+. .|.
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~------------------------------------~h~ 213 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFK------------------------------------AHE 213 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEE------------------------------------CCS
T ss_pred ccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEc------------------------------------Ccc
Confidence 333 478888888888888832 22111111 145
Q ss_pred CCeEEEEEccCCCEEEEeecCCeEEEEeccc-cceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCce
Q psy17863 209 EPIVDACFTRDCQCILTCSTDECLRLFDKAT-GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 287 (341)
Q Consensus 209 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (341)
..|.+++|+|+|++|++++.|+.|++||+.. ......+. +...+..+ +|+|++++++++ .|+.|++|++.+++..
T Consensus 214 ~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v--~~sp~~~~la~~-~d~~v~iw~~~~~~~~ 289 (343)
T 2xzm_R 214 SNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQI--AFNPKLQWVAVG-TDQGVKIFNLMTQSKA 289 (343)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEE--EECSSSCEEEEE-ESSCEEEEESSSCCSC
T ss_pred ccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEE--EECCCCCEEEEE-CCCCEEEEEeCCCCCC
Confidence 6789999999999999999999999999844 34444443 34456666 899999877655 6888999999887665
Q ss_pred E--EEEe---------eeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 288 S--TLIH---------SVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 288 ~--~~~~---------~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
. .+.. .+|...|.+++|+|++++|++|+ ||.|++|+++++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 290 PVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp SEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred ceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 4 3321 14677899999999999999999 9999999987653
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=327.91 Aligned_cols=284 Identities=14% Similarity=0.192 Sum_probs=223.2
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEeC------CCeEEEEcCCCccee----eEecCcccceeEEEEecCCCEEEEecCCC
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCGS------DKKIKLWNPYRNLLL----KTYGGHAHEVNDATAACDSSQIASGASDK 77 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~~------dg~i~iw~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 77 (341)
...+|.+.|++++|+|||++||+|+. |+.|++|+..++... .....|...|++++|+|++. +++++.||
T Consensus 37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg 115 (357)
T 4g56_B 37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSG 115 (357)
T ss_dssp ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTS
T ss_pred CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCC
Confidence 34579999999999999999999997 788999998776533 33456888999999999985 55678899
Q ss_pred cEEEEECCCCceeee----ecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------CcCeEEeecCCC--c
Q psy17863 78 SVILWEVTTGQPVRR----WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCLDSKD--S 143 (341)
Q Consensus 78 ~i~iw~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~--~ 143 (341)
+|++||+.+++.... ..+|...|++++|+|++++|++++.|+.|++||+++++ ...+..+.+.++ .
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 999999988865432 34789999999999999999999999999999998754 234444544433 4
Q ss_pred eEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC-CCE
Q psy17863 144 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD-CQC 222 (341)
Q Consensus 144 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~ 222 (341)
.+++++.||.|++||+++++....+.... +...+.+++|+|+ +.+
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~----------------------------------~~~~v~~v~~sp~~~~~ 241 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRIDFCA----------------------------------SDTIPTSVTWHPEKDDT 241 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCCCTT----------------------------------CCSCEEEEEECTTSTTE
T ss_pred eeeeeccCCceEEEECCCCceeeeeeecc----------------------------------ccccccchhhhhcccce
Confidence 78999999999999999877665443222 2455777888886 467
Q ss_pred EEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCC-CEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEE
Q psy17863 223 ILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKD-SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNS 301 (341)
Q Consensus 223 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 301 (341)
|++|+.|+.|++||+++++.+..+.+|...+..+ +|+|++ ++|++|+.||+|+|||+++++.+..+ +|...|++
T Consensus 242 la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l--~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~ 316 (357)
T 4g56_B 242 FACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL--AYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTG 316 (357)
T ss_dssp EEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE--EECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEE
T ss_pred EEEeecccceeEEECCCCcEeEEEeccceeEEEE--EEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEE
Confidence 8899999999999999999999999999999888 889987 57999999999999999988776554 69999999
Q ss_pred EEEcC-CCcEEEEeC-CCcEEEEEcccccCCc
Q psy17863 302 LCSHP-TRKHIMSAC-GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 302 ~~~~~-~~~~l~~~~-d~~i~vw~~~~~~~~~ 331 (341)
++|+| ++++|++++ |++|++|+++......
T Consensus 317 vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~ 348 (357)
T 4g56_B 317 VAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTE 348 (357)
T ss_dssp EEECSSSTTEEEEEETTSCEEEEECC------
T ss_pred EEEeCCCCCEEEEEcCCCeEEEEECCCCCccc
Confidence 99998 799999999 9999999998765443
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-48 Score=324.85 Aligned_cols=283 Identities=18% Similarity=0.313 Sum_probs=238.2
Q ss_pred eeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCccc------------------ceeEEEEecCCCEEEE
Q psy17863 11 CKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH------------------EVNDATAACDSSQIAS 72 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~ 72 (341)
+|.+.|++++|+|||++||+|+ ++.+++|++.+++.+..+..|.. .|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 5999999999999999999977 78999999999998888765542 3899999999999999
Q ss_pred ecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC-------cCeEEeec-C-CCc
Q psy17863 73 GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH-------HPIQCCLD-S-KDS 143 (341)
Q Consensus 73 ~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~-~-~~~ 143 (341)
|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++. ..+..+.. + .+.
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 220 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 220 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCC
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999987642 22333333 3 456
Q ss_pred eEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEE
Q psy17863 144 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCI 223 (341)
Q Consensus 144 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l 223 (341)
.+++++.|+.|++||+++++....+..... ....|...|.+++|+|++++|
T Consensus 221 ~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~-----------------------------~~~~h~~~v~~v~~~~~g~~l 271 (393)
T 1erj_A 221 YIAAGSLDRAVRVWDSETGFLVERLDSENE-----------------------------SGTGHKDSVYSVVFTRDGQSV 271 (393)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC-----------------------------------CCCSSCEEEEEECTTSSEE
T ss_pred EEEEEcCCCcEEEEECCCCcEEEeeccccc-----------------------------CCCCCCCCEEEEEECCCCCEE
Confidence 899999999999999988765544321100 001256789999999999999
Q ss_pred EEeecCCeEEEEecccc------------ceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 224 LTCSTDECLRLFDKATG------------ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 224 ~~~~~d~~i~i~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
++++.|+.|++||+++. .+...+.+|...+..+ ++++++++|++|+.||.|++||+.+++++..+.
T Consensus 272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~ 349 (393)
T 1erj_A 272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV--ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 349 (393)
T ss_dssp EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEE--EECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEE--EECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC
Confidence 99999999999998753 3456778899888877 899999999999999999999999999998888
Q ss_pred eeeeccceEEEEEcC------CCcEEEEeC-CCcEEEEEcccc
Q psy17863 292 HSVGKAVVNSLCSHP------TRKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 292 ~~~~~~~v~~~~~~~------~~~~l~~~~-d~~i~vw~~~~~ 327 (341)
+|...|.+++|++ ++.+|++++ |+.|++|++.+.
T Consensus 350 --~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 350 --GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp --CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred --CCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 8999999999986 689999999 999999998754
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=312.83 Aligned_cols=287 Identities=17% Similarity=0.259 Sum_probs=227.8
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCc--ceeeEe-cC-cccceeEEEEecCCCEEEEecCCCc
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN--LLLKTY-GG-HAHEVNDATAACDSSQIASGASDKS 78 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~dg~ 78 (341)
++++++|++|.++|.+++|+|+ +||+|+.|++|++||+.++ +....+ .. |...|.+++|+|++++|++++.|++
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 6788999999999999999988 9999999999999999875 445555 44 9999999999999999999999999
Q ss_pred EEEEECCC-------CceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeecc
Q psy17863 79 VILWEVTT-------GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSD 151 (341)
Q Consensus 79 i~iw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (341)
|++||++. .+.+..+.+|...|.+++|+|++++|++++.|+.|++||++.....
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~------------------- 142 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE------------------- 142 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC-------------------
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC-------------------
Confidence 99999853 3456778899999999999999999999999999999998542200
Q ss_pred CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccc---------cCCCCeEEEEEccC--
Q psy17863 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED---------YGQEPIVDACFTRD-- 219 (341)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~---------~~~~~i~~~~~~~~-- 219 (341)
.+.+..+ ..+...+.+++|+|++.++++++ ++.+++|+.... .|...|.+++|+|+
T Consensus 143 ----------~~~~~~~--~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 210 (330)
T 2hes_X 143 ----------YECISVL--QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG 210 (330)
T ss_dssp ----------CEEEEEE--CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS
T ss_pred ----------eEEEEEe--ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC
Confidence 0011111 22456799999999999998887 589999997643 27889999999998
Q ss_pred CCEEEEeecCCeEEEEecccc--------ceeeeecC-cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc--eE
Q psy17863 220 CQCILTCSTDECLRLFDKATG--------ELLEEYKG-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ--IS 288 (341)
Q Consensus 220 ~~~l~~~~~d~~i~i~d~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~ 288 (341)
+.+|++++.|++|++||+..+ .....+.. |...+..+ +|++++ +|++++.||.|++|+..+++. ..
T Consensus 211 ~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v--~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~ 287 (330)
T 2hes_X 211 VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNV--AWGFNG-LIASVGADGVLAVYEEVDGEWKVFA 287 (330)
T ss_dssp SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEE--EECTTS-CEEEEETTSCEEEEEEETTEEEEEE
T ss_pred eeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEE--EEcCCC-EEEEEeCCCEEEEEEcCCCceEEEe
Confidence 778999999999999998765 34455554 88888888 777654 899999999999999987742 22
Q ss_pred EEEeeeecc-ceEEEEEcC--CCcEEEEeC-CCcEEEEEccc
Q psy17863 289 TLIHSVGKA-VVNSLCSHP--TRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 289 ~~~~~~~~~-~v~~~~~~~--~~~~l~~~~-d~~i~vw~~~~ 326 (341)
.. ...|.. .|.+++|+| ++++|++++ ||.|++|++++
T Consensus 288 ~~-~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 288 KR-ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EE-SCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cc-ccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 22 125666 899999999 789999999 99999999865
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-48 Score=319.99 Aligned_cols=280 Identities=15% Similarity=0.174 Sum_probs=222.1
Q ss_pred eeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC-----------cceeeEecCcccceeEEEEecCCCEEEEecCCCc
Q psy17863 10 DCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR-----------NLLLKTYGGHAHEVNDATAACDSSQIASGASDKS 78 (341)
Q Consensus 10 ~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 78 (341)
..|...|.+++|+|||++|++++ |+++++||... .........+...|.+++|+|++ .|++|+.||+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 35778899999999999999887 77788887321 11112222366789999999985 6889999999
Q ss_pred EEEEECCCCceeeee----cccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------CcCeEEeecCCC--ce
Q psy17863 79 VILWEVTTGQPVRRW----REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCLDSKD--SQ 144 (341)
Q Consensus 79 i~iw~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~--~~ 144 (341)
|++||+++++.+..+ .+|...|++++|+|++++|++++.|+.|++||+++++ ...+..+.+.++ ..
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 999999998765443 4799999999999999999999999999999998754 234555554443 36
Q ss_pred EEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC-CCEE
Q psy17863 145 IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD-CQCI 223 (341)
Q Consensus 145 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~l 223 (341)
+++++.|++|++||+++++....+....+ ...+.+++|+|+ ++++
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~p~~~~~l 230 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAP----------------------------------GYLPTSLAWHPQQSEVF 230 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC--------------------------------------CCCEEEEEECSSCTTEE
T ss_pred eeeeccccccccccccccceeeeeeccee----------------------------------eccceeeeecCCCCcce
Confidence 88999999999999999887666543322 345667777774 5678
Q ss_pred EEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCC-CEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEE
Q psy17863 224 LTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKD-SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 302 (341)
Q Consensus 224 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 302 (341)
++|+.|+.|++||+++++++..+.+|...|..+ +|+|++ ++|++|+.|++|+|||+.+++.. .+. +|.+.|+++
T Consensus 231 ~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v--~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~--~H~~~V~~v 305 (344)
T 4gqb_B 231 VFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL--VFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQ--AHRDFVRDA 305 (344)
T ss_dssp EEEETTSEEEEEESCC--CCEEEECCSSCEEEE--EECSSSSCCEEEEETTSCEEEECTTCCEEE-EEC--CCSSCEEEE
T ss_pred EEeccCCcEEEEECCCCcEEEEEcCCCCCEEEE--EEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEc--CCCCCEEEE
Confidence 899999999999999999999999999999988 899987 57999999999999999887654 444 899999999
Q ss_pred EEcCCCc-EEEEeC-CCcEEEEEcccccCC
Q psy17863 303 CSHPTRK-HIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 303 ~~~~~~~-~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
+|+|+++ +|++++ |++|++|+++++..+
T Consensus 306 ~~sp~~~~llas~s~D~~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 306 TWSPLNHSLLTTVGWDHQVVHHVVPTEPLP 335 (344)
T ss_dssp EECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred EEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence 9999986 567888 999999999876544
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-47 Score=313.83 Aligned_cols=298 Identities=17% Similarity=0.282 Sum_probs=260.2
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
....+|.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeecccCccEEEEEEcCCCcEEEEecCC-----CeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD-----NTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
+.+++.+..+. +...+.+++|+|+++++++++.+ +.|.+||++..........
T Consensus 103 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~--------------------- 160 (369)
T 3zwl_B 103 VSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK--------------------- 160 (369)
T ss_dssp TTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE---------------------
T ss_pred CCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecc---------------------
Confidence 99999998888 88999999999999999999998 9999999987653221111
Q ss_pred ccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccc-c-------CCCCeEEEEEccCCCEEEEeecC
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED-Y-------GQEPIVDACFTRDCQCILTCSTD 229 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~-~-------~~~~i~~~~~~~~~~~l~~~~~d 229 (341)
........+..+.....+.+++++|+++.+++++ ++.+++||+... . +...+.+++|+|++++|++++.|
T Consensus 161 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 239 (369)
T 3zwl_B 161 -VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD 239 (369)
T ss_dssp -ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred -cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCC
Confidence 1112222333333334799999999999888876 589999999872 2 78899999999999999999999
Q ss_pred CeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCC--------------cEEEEeeeCCCceEEEEeeee
Q psy17863 230 ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG--------------KIYKWQLVDSSQISTLIHSVG 295 (341)
Q Consensus 230 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~ 295 (341)
+.|++||+++++.+..+. +...+..+ +++|+++++++++.++ .+++||..+++.+..+. .|
T Consensus 240 ~~i~v~d~~~~~~~~~~~-~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~ 314 (369)
T 3zwl_B 240 TNSFLVDVSTLQVLKKYE-TDCPLNTA--VITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ--GH 314 (369)
T ss_dssp SEEEEEETTTCCEEEEEE-CSSCEEEE--EECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE--CC
T ss_pred ceEEEEECCCCceeeeec-CCCCceeE--EecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee--cc
Confidence 999999999999888887 56666666 8999999999999888 89999999999999988 89
Q ss_pred ccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccC
Q psy17863 296 KAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 296 ~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~ 329 (341)
...|++++|+|++++|++++ ||.|++|+++++..
T Consensus 315 ~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 315 FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 99999999999999999999 99999999987653
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-49 Score=331.41 Aligned_cols=313 Identities=16% Similarity=0.243 Sum_probs=264.0
Q ss_pred eCCcEEEEEEccCCC-EEEEE----------eCCCeEEEEcCCCcc---eeeEecCcccceeEEEEecCCCEEEEecCCC
Q psy17863 12 KQGAIRAVRFNVDGS-YCLTC----------GSDKKIKLWNPYRNL---LLKTYGGHAHEVNDATAACDSSQIASGASDK 77 (341)
Q Consensus 12 h~~~v~~~~~~~~~~-~l~t~----------~~dg~i~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 77 (341)
+...|.+++|+|+++ +|++| +.|+.|++||+.+++ .+..+ .|...|.+++|+|++++|++++.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 446789999999987 99999 889999999998876 33344 4889999999999999999999999
Q ss_pred cEEEEECCC----CceeeeecccCccEEEEEEcCC-CcEEEEecCCCeEEEEEecCCC------C-----------cCeE
Q psy17863 78 SVILWEVTT----GQPVRRWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRS------H-----------HPIQ 135 (341)
Q Consensus 78 ~i~iw~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~------~-----------~~~~ 135 (341)
.|++||+.+ .+.+..+..|...|.+++|+|+ +++|++++.|+.|++||+++.+ . ..+.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 999999987 4578888999999999999998 8999999999999999998764 1 1233
Q ss_pred EeecCC--CceEEEeeccCeEEEEEccCCcceeeeEeeec----CceEEEEEECCCC-ceEEEeCC-C---ceEEEEccc
Q psy17863 136 CCLDSK--DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG----KAVVNSLCSHPTR-KHIMSACG-N---NVKLWTAEE 204 (341)
Q Consensus 136 ~~~~~~--~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~-~---~i~~~~~~~ 204 (341)
.+.+.+ +..+++++.||.|++||+++.+....+..... ...+.+++|+|++ .+++++.. + .+++||+..
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 344444 46899999999999999999887776654321 5679999999997 56666654 5 999999986
Q ss_pred c---------cCCCCeEEEEEcc-CCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCC-CEEEEecCC
Q psy17863 205 D---------YGQEPIVDACFTR-DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKD-SQIFCGSSD 273 (341)
Q Consensus 205 ~---------~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d 273 (341)
. .|...+.+++|+| ++++|++++.|+.|++||+++++.+..+.+|...+..+ +|+|++ .+|++++.|
T Consensus 250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~--~~s~~~~~~l~s~~~d 327 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKT--KFAPEAPDLFACASFD 327 (416)
T ss_dssp TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCE--EECTTCTTEEEECCSS
T ss_pred CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEE--EECCCCCCEEEEEecC
Confidence 4 3678899999999 99999999999999999999999999999999999888 899998 899999999
Q ss_pred CcEEEEeeeCCCceEEEE---------------eee------------------eccceEEEEEcCCCcEEEEeC-CCcE
Q psy17863 274 GKIYKWQLVDSSQISTLI---------------HSV------------------GKAVVNSLCSHPTRKHIMSAC-GNNV 319 (341)
Q Consensus 274 g~i~iwd~~~~~~~~~~~---------------~~~------------------~~~~v~~~~~~~~~~~l~~~~-d~~i 319 (341)
|.|++|++.++....... ... +..++.+++|+|+|++|++++ |+.|
T Consensus 328 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v 407 (416)
T 2pm9_A 328 NKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGV 407 (416)
T ss_dssp SEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCB
T ss_pred CcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeE
Confidence 999999998765433221 001 566788999999999999999 9999
Q ss_pred EEEEcccc
Q psy17863 320 KLWTAEED 327 (341)
Q Consensus 320 ~vw~~~~~ 327 (341)
+||++.++
T Consensus 408 ~~w~~~~~ 415 (416)
T 2pm9_A 408 SITNPKIS 415 (416)
T ss_dssp CCBCCCCC
T ss_pred EEEEeccC
Confidence 99999864
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-47 Score=310.99 Aligned_cols=285 Identities=21% Similarity=0.345 Sum_probs=237.1
Q ss_pred eeeeEEeeeCCcEEEEEEccC-CCEEEEEeCCCeEEEEcCCCcc-----eeeEecCcccceeEEEEecCCCEEEEecCCC
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVD-GSYCLTCGSDKKIKLWNPYRNL-----LLKTYGGHAHEVNDATAACDSSQIASGASDK 77 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~i~iw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 77 (341)
++..+|+||++.|++|+|+|+ +++|+||+.|++|+|||+.+.+ +...+.+|...|.+++|+|++++|++++.|+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 456689999999999999997 6899999999999999987543 5667889999999999999999999999999
Q ss_pred cEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC---------CcCeEEeec---CCCceE
Q psy17863 78 SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS---------HHPIQCCLD---SKDSQI 145 (341)
Q Consensus 78 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~---~~~~~~ 145 (341)
.|++|+............+...+....+++++++|++++.|+.+++||+.... ...+..... .....+
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 99999999998888888889999999999999999999999999999986532 122333322 233467
Q ss_pred EEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEE
Q psy17863 146 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILT 225 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 225 (341)
++++.|+.|++||+++.+....+.. |..+|.+++|+|++++|++
T Consensus 189 ~s~~~d~~i~i~d~~~~~~~~~~~~------------------------------------h~~~v~~~~~s~~~~~l~s 232 (340)
T 4aow_A 189 VSCGWDKLVKVWNLANCKLKTNHIG------------------------------------HTGYLNTVTVSPDGSLCAS 232 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECC------------------------------------CSSCEEEEEECTTSSEEEE
T ss_pred EEEcCCCEEEEEECCCCceeeEecC------------------------------------CCCcEEEEEECCCCCEEEE
Confidence 8888999999999887665544422 3567889999999999999
Q ss_pred eecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE-------eeeeccc
Q psy17863 226 CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI-------HSVGKAV 298 (341)
Q Consensus 226 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~ 298 (341)
++.|+.|++||+++.+.+..+..+. .+..+ +++|++. +++++.|+.|++||++++..+..+. ...|...
T Consensus 233 ~s~Dg~i~iwd~~~~~~~~~~~~~~-~v~~~--~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~ 308 (340)
T 4aow_A 233 GGKDGQAMLWDLNEGKHLYTLDGGD-IINAL--CFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ 308 (340)
T ss_dssp EETTCEEEEEETTTTEEEEEEECSS-CEEEE--EECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCC
T ss_pred EeCCCeEEEEEeccCceeeeecCCc-eEEee--ecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC
Confidence 9999999999999999988888654 56655 7888774 5566679999999998877665543 1257889
Q ss_pred eEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 299 VNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 299 v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
|++++|+|++++|++++ ||.|+||++.++.
T Consensus 309 v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 309 CTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999999999999 9999999998864
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-46 Score=330.40 Aligned_cols=317 Identities=15% Similarity=0.182 Sum_probs=265.1
Q ss_pred eeeeEEeeeCCcEEEEEEccCCC-EEEEEeCCCeEEEEcCCCcceeeEecCccc---ceeEEEEecC-CCEEEEecCCCc
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGHAH---EVNDATAACD-SSQIASGASDKS 78 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~ 78 (341)
+.+..+.+|...|++++|+|+++ ++++++.|+.|++||..+++.+..+..|.. .|.+++|+|+ +++|++++.||.
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 230 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK 230 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe
Confidence 45678889999999999999998 899999999999999999999999999999 9999999999 999999999999
Q ss_pred EEEEECCCCceeeee-c---ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC------------cCeEEeecCCC
Q psy17863 79 VILWEVTTGQPVRRW-R---EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH------------HPIQCCLDSKD 142 (341)
Q Consensus 79 i~iw~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------------~~~~~~~~~~~ 142 (341)
|++||+.+++.+..+ . .|...|.+++|+ ++++|++++.|+.|++||+++++. .....+..+.+
T Consensus 231 i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (615)
T 1pgu_A 231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN 309 (615)
T ss_dssp EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET
T ss_pred EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCC
Confidence 999999999999988 6 899999999999 999999999999999999986541 22333334477
Q ss_pred ceEEEeeccCeEEEEEccCCcceeeeEee-------------------------------ecCceEEEEEE---------
Q psy17863 143 SQIFCGSSDGKIYKWQLVDSSQISTLIHS-------------------------------VGKAVVNSLCS--------- 182 (341)
Q Consensus 143 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~--------- 182 (341)
..+++++.+|.+++||+.+.+....+..+ .+...+.++++
T Consensus 310 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~ 389 (615)
T 1pgu_A 310 GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSI 389 (615)
T ss_dssp TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEE
T ss_pred CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEE
Confidence 78999999999999998765544333211 01112222222
Q ss_pred -------------------------CCC--------------------------------------CceEEEeC--CCce
Q psy17863 183 -------------------------HPT--------------------------------------RKHIMSAC--GNNV 197 (341)
Q Consensus 183 -------------------------~~~--------------------------------------~~~~~~~~--~~~i 197 (341)
+|+ +++++++. ++.+
T Consensus 390 ~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i 469 (615)
T 1pgu_A 390 SWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTI 469 (615)
T ss_dssp ETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCE
T ss_pred eCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeE
Confidence 222 23333333 5667
Q ss_pred EEEEcccc--------cCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecC-cccceeEEEEEeCC------
Q psy17863 198 KLWTAEED--------YGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG-HKSGDFRIECCLDS------ 262 (341)
Q Consensus 198 ~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~------ 262 (341)
++|++... .+...+.+++|+|++++|++++.|+.|++||+.+++.+..+.+ |...+..+ +|+|
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~--~~sp~~~~~~ 547 (615)
T 1pgu_A 470 QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAI--SWKPAEKGAN 547 (615)
T ss_dssp EEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEE--EECCCC----
T ss_pred EEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEE--EEcCcccccc
Confidence 77776542 2678899999999999999999999999999999999999988 99999888 8999
Q ss_pred ----CCCEEEEecCCCcEEEEeeeCC-CceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 263 ----KDSQIFCGSSDGKIYKWQLVDS-SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 263 ----~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
++++|++++.||.|++||+.++ +++..+. +|...|++++|+|+++ |++++ |+.|++|+++.
T Consensus 548 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 548 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp --CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--SSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred ccccCCCEEEEEcCCCcEEEEECCCCceechhhh--cCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 9999999999999999999998 6777777 8999999999999999 99999 99999999875
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-46 Score=303.99 Aligned_cols=305 Identities=12% Similarity=0.147 Sum_probs=260.2
Q ss_pred eeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCcee
Q psy17863 11 CKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV 90 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 90 (341)
.|.++|.+++|+|||++++++..++.+..|.............|...|.+++|+|++++|++++ ||.|++||+.+++..
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK 85 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence 3667899999999999999988888888887666555555557999999999999999999998 999999999887643
Q ss_pred eee---c--ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC----------cCeEEe-ecCCCceEEEeeccCeE
Q psy17863 91 RRW---R--EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH----------HPIQCC-LDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 91 ~~~---~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~-~~~~~~~~~~~~~~g~i 154 (341)
..+ . .|...|.+++|+|++++|++++.|+.|++||+++++. ..+..+ ..+.+..+++++.+|.+
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 333 2 6899999999999999999999999999999987652 223333 34456689999999999
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc------CCCCeEEEEEccCCCEEEEee
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCS 227 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~ 227 (341)
++||+++.+....+.. +...+.+++++|+++.+++++ ++.+++||+.... +..++.+++|+|+++++++++
T Consensus 166 ~~~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 243 (337)
T 1gxr_A 166 AVWDLHNQTLVRQFQG--HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM 243 (337)
T ss_dssp EEEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred EEEeCCCCceeeeeec--ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEc
Confidence 9999998877666643 456799999999999888876 5899999987644 678899999999999999999
Q ss_pred cCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCC
Q psy17863 228 TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 228 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
.++.|++||+++++. ..+..|...+..+ +++|++++|++++.||.|++||+.+++.+... .|...|.+++|+|+
T Consensus 244 ~~~~i~~~~~~~~~~-~~~~~~~~~v~~~--~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~---~~~~~v~~~~~s~~ 317 (337)
T 1gxr_A 244 ESSNVEVLHVNKPDK-YQLHLHESCVLSL--KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---KESSSVLSCDISVD 317 (337)
T ss_dssp TTSCEEEEETTSSCE-EEECCCSSCEEEE--EECTTSSEEEEEETTSEEEEEETTTCCEEEEE---ECSSCEEEEEECTT
T ss_pred CCCcEEEEECCCCCe-EEEcCCccceeEE--EECCCCCEEEEecCCCcEEEEECCCCeEEEEe---cCCCcEEEEEECCC
Confidence 999999999988765 4677888888887 89999999999999999999999998887554 47889999999999
Q ss_pred CcEEEEeC-CCcEEEEEc
Q psy17863 308 RKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 308 ~~~l~~~~-d~~i~vw~~ 324 (341)
+++|++++ ||.|++|++
T Consensus 318 ~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 318 DKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SCEEEEEETTSCEEEEEE
T ss_pred CCEEEEecCCCeEEEEEE
Confidence 99999999 999999996
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-46 Score=352.61 Aligned_cols=319 Identities=20% Similarity=0.354 Sum_probs=278.4
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECC
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 85 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 85 (341)
...+.+|.+.|++++|+|+|++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecccCccEEEEEEcC--CCcEEEEecCCCeEEEEEecCCC--------CcCeEEe-ecCCCceEEEeeccCeE
Q psy17863 86 TGQPVRRWREHASKVTCVKFNE--DSSVVISGSQDNTVMMWDVKSRS--------HHPIQCC-LDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~-~~~~~~~~~~~~~~g~i 154 (341)
+++.+..+.+|...|.+++|+| ++.++++++.|+.|++||+++++ ...+..+ ..+.+..+++++.||.|
T Consensus 688 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 9999999999999999999999 56689999999999999998754 2334444 44556689999999999
Q ss_pred EEEEccCCcceeeeEeee-----------cCceEEEEEECCCCceEEEeCCCceEEEEccccc--------CCCCeEEEE
Q psy17863 155 YKWQLVDSSQISTLIHSV-----------GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY--------GQEPIVDAC 215 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~i~~~~ 215 (341)
++||+.+.+....+.... ....+.+++|+|+++.++++.++.+.+|+..... +...+.+++
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~ 847 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 847 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence 999999887665553211 1235778999999999999999999999987643 778999999
Q ss_pred EccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC------------
Q psy17863 216 FTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD------------ 283 (341)
Q Consensus 216 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------ 283 (341)
|+|+++++++++.|+.|++||+.++..+..+.+|...+..+ +|+|+++++++++.||.|++|++.+
T Consensus 848 ~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v--~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~ 925 (1249)
T 3sfz_A 848 FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGV--MFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE 925 (1249)
T ss_dssp ECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEE--EECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEE--EECCCCCEEEEEeCCCeEEEEEccccceeeeecccce
Confidence 99999999999999999999999999999999999998888 8889999999999999888888532
Q ss_pred -------------------------------------------------------------------CCceEEEEeeeec
Q psy17863 284 -------------------------------------------------------------------SSQISTLIHSVGK 296 (341)
Q Consensus 284 -------------------------------------------------------------------~~~~~~~~~~~~~ 296 (341)
++....+. .|.
T Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~--~h~ 1003 (1249)
T 3sfz_A 926 IDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV--GHK 1003 (1249)
T ss_dssp EEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECC--CCS
T ss_pred eeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecc--cCC
Confidence 22222333 577
Q ss_pred cceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 297 AVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 297 ~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
..|++++|+|++++|++++ |+.|++|++.++.
T Consensus 1004 ~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A 1004 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp SCCCCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 8999999999999999999 9999999998754
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-45 Score=334.65 Aligned_cols=192 Identities=11% Similarity=0.165 Sum_probs=158.4
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCC
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 87 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 87 (341)
...+|.+.|++++|+|++++||+|+.||.|+||+..+.+....+. |...|.+++|+| +++|++++.|++|++||++++
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 445899999999999999999999999999999998877666554 788999999999 889999999999999999999
Q ss_pred ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC-------------------cCeEEeecCCC--ceEE
Q psy17863 88 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH-------------------HPIQCCLDSKD--SQIF 146 (341)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------------------~~~~~~~~~~~--~~~~ 146 (341)
+.+..+. |...|++++|+|++++|++|+.||.|++||+++... ..+..+.+.+. ..++
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 9988886 778999999999999999999999999999876542 23444445543 5899
Q ss_pred EeeccCeEEEEEccCCcceeeeEee----------------ecCceEEEEEECCCCceEEEeC-CCceEEEEcc
Q psy17863 147 CGSSDGKIYKWQLVDSSQISTLIHS----------------VGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 203 (341)
Q Consensus 147 ~~~~~g~i~~~d~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 203 (341)
+++.||.+ +||+++.+....+..+ .+...|.+++|+|+++++++++ ++.|++||+.
T Consensus 169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~ 241 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDAN 241 (902)
T ss_dssp EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 99999999 9999988766655432 1124578888888887777765 4677777763
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-45 Score=331.64 Aligned_cols=323 Identities=17% Similarity=0.259 Sum_probs=274.8
Q ss_pred CCceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEE
Q psy17863 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 80 (341)
Q Consensus 1 ~~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 80 (341)
|.++..+.+.+|.+.|++++|+|++++||+++.||.|++||+.+++.+..+..|..+|.+++|+|++++|++++.||.|+
T Consensus 1 m~l~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (814)
T ss_dssp -CCCCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred CCcccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEE
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC---------CcCeEEeecCC--CceEEEee
Q psy17863 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS---------HHPIQCCLDSK--DSQIFCGS 149 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~--~~~~~~~~ 149 (341)
+||+.+++.+..+.+|...|++++|+|++++|++++.||.|++||++++. ...+.++.+.+ +..+++++
T Consensus 81 vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred EEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999998752 23455555554 55899999
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEEECC--CCceEEEeCC-CceEEEEccccc-------CCCCeEEEEEccC
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP--TRKHIMSACG-NNVKLWTAEEDY-------GQEPIVDACFTRD 219 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~i~~~~~~~~~-------~~~~i~~~~~~~~ 219 (341)
.||.|++||+........+... ....+..++++| ++..+++++. +.+++|+..... +...+.+++|+|+
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~ 239 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTG-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECC-CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred CCCeEEEEECCCCcceeEEecC-CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 9999999999887776666543 335688999999 8888888874 899999987643 7789999999999
Q ss_pred CCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCE-EEEecCCCcEEEEeeeCCCceEEEE-------
Q psy17863 220 CQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQISTLI------- 291 (341)
Q Consensus 220 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~------- 291 (341)
++++++++.||.|++||+.+++.+..+..|...+..+ +++|++.. +++.+.++.+.+|++........+.
T Consensus 240 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 317 (814)
T 3mkq_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCI--ATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVW 317 (814)
T ss_dssp SSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEE--EECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEE--EEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEE
Confidence 9999999999999999999999999999998888887 88999873 2444456678888876543222111
Q ss_pred ----------------------------------eeeeccceEEEEEcCCCcEEEEeCCCcEEEEEccc
Q psy17863 292 ----------------------------------HSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 292 ----------------------------------~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
...+...+.+++|+|+|+++++++++.+.+|++..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~ 386 (814)
T 3mkq_A 318 SGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALA 386 (814)
T ss_dssp ECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTT
T ss_pred ECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECcc
Confidence 01233457889999999999888888999998754
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-45 Score=327.53 Aligned_cols=283 Identities=21% Similarity=0.349 Sum_probs=234.6
Q ss_pred eeeeEEeeeCCcEEEEEEccCC-CEEEEEeCCCeEEEEcCCCc-----ceeeEecCcccceeEEEEecCCCEEEEecCCC
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDG-SYCLTCGSDKKIKLWNPYRN-----LLLKTYGGHAHEVNDATAACDSSQIASGASDK 77 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 77 (341)
+....+++|.+.|++++|+|++ ++|+||+.|++|++|++.+. .....+.+|...|.+++|+|++++|++|+.||
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 4556799999999999999875 79999999999999998753 34567889999999999999999999999999
Q ss_pred cEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCC-----------CCcCeEEeecCCC---c
Q psy17863 78 SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR-----------SHHPIQCCLDSKD---S 143 (341)
Q Consensus 78 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----------~~~~~~~~~~~~~---~ 143 (341)
+|++||+.+++....+.+|...|.+++|+|++++|++++.|++|++||+... ....+.++.+.++ .
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 9999999999999999999999999999999999999999999999997542 1223455555443 3
Q ss_pred eEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEE
Q psy17863 144 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCI 223 (341)
Q Consensus 144 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l 223 (341)
.+++++.|+.|++||+++.+....+.. |...|.+++|+|++++|
T Consensus 533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~------------------------------------h~~~v~~v~~spdg~~l 576 (694)
T 3dm0_A 533 TIVSASWDKTVKVWNLSNCKLRSTLAG------------------------------------HTGYVSTVAVSPDGSLC 576 (694)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECC------------------------------------CSSCEEEEEECTTSSEE
T ss_pred eEEEEeCCCeEEEEECCCCcEEEEEcC------------------------------------CCCCEEEEEEeCCCCEE
Confidence 688899999999999887654433321 45678999999999999
Q ss_pred EEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEee----------
Q psy17863 224 LTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS---------- 293 (341)
Q Consensus 224 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------- 293 (341)
++++.|+.|++||+.+++.+..+..+ ..+..+ +|+|++.++++++ ++.|++||+++++.+..+...
T Consensus 577 ~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~--~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 652 (694)
T 3dm0_A 577 ASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHAL--CFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADN 652 (694)
T ss_dssp EEEETTSBCEEEETTTTEEEECCBCS-SCEEEE--EECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--------
T ss_pred EEEeCCCeEEEEECCCCceEEEecCC-CcEEEE--EEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccc
Confidence 99999999999999999988887654 456666 8999998877765 566999999998877766410
Q ss_pred -------eeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 294 -------VGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 294 -------~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
.+...+++++|+|++++|++++ ||.|++|++..
T Consensus 653 ~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 653 SGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp --------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 0112378999999999999999 99999999853
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-45 Score=304.54 Aligned_cols=286 Identities=14% Similarity=0.174 Sum_probs=237.0
Q ss_pred CceeeeEEeeeCCcEEEEEEccCC-CEEEEEeCCCeEEEEcCCCcceeeEec--CcccceeEEEEec-CCCEEEEecCCC
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDG-SYCLTCGSDKKIKLWNPYRNLLLKTYG--GHAHEVNDATAAC-DSSQIASGASDK 77 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg 77 (341)
+++..+.+.+|.+.|++++|+|++ ++|++|+.||.|++||+.+++....+. +|...|.+++|+| ++++|++++.|+
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 356788999999999999999999 999999999999999999888777765 6999999999999 779999999999
Q ss_pred cEEEEECCCCceeeeecc---cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeE
Q psy17863 78 SVILWEVTTGQPVRRWRE---HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 78 ~i~iw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 154 (341)
.|++||+.+ +.+..+.. |...|.+++|+|++++|++++.|+.|++||++...
T Consensus 142 ~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------------------ 196 (383)
T 3ei3_B 142 ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHE------------------------ 196 (383)
T ss_dssp EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCE------------------------
T ss_pred EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCE------------------------
Confidence 999999985 55555543 44889999999999999999999999999984211
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCc-eEEEeC-CCceEEEEcccc----------cCCCCeEEEEEcc-CCC
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK-HIMSAC-GNNVKLWTAEED----------YGQEPIVDACFTR-DCQ 221 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~i~~~~~~~~----------~~~~~i~~~~~~~-~~~ 221 (341)
...+ ..+...+.+++|+|+++ ++++++ ++.+++||+... .+...+.+++|+| +++
T Consensus 197 ----------~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 264 (383)
T 3ei3_B 197 ----------IFKE--KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDST 264 (383)
T ss_dssp ----------EEEE--ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSC
T ss_pred ----------EEEe--ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCC
Confidence 1111 12445689999999998 666655 588999998862 1678999999999 999
Q ss_pred EEEEeecCCeEEEEeccccceeeeecCccc-------ce--------eEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc
Q psy17863 222 CILTCSTDECLRLFDKATGELLEEYKGHKS-------GD--------FRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 286 (341)
Q Consensus 222 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------~~--------~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (341)
+|++++.|+.|++||+++++....+.+|.. .+ ..+.++++|++++ +|+.||.|++||+.+++.
T Consensus 265 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~ 342 (383)
T 3ei3_B 265 KLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL 342 (383)
T ss_dssp EEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCE
T ss_pred EEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCce
Confidence 999999999999999999888777765532 11 1122367777776 888999999999999999
Q ss_pred eEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEccc
Q psy17863 287 ISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 287 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
+..+....+...+..++|+|++++|++++|+.|++|++++
T Consensus 343 ~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 343 VHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNRED 382 (383)
T ss_dssp EEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred eeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence 9988743367788888999999999999999999999875
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-45 Score=307.15 Aligned_cols=287 Identities=13% Similarity=0.181 Sum_probs=244.1
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc------eeeEecCcccceeEEEEecC----C---CEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL------LLKTYGGHAHEVNDATAACD----S---SQI 70 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~l 70 (341)
+..+.+++|.+.|++++|+| ++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|+ + ++|
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 45667889999999999999 799999999999999999887 78888899999999999999 9 999
Q ss_pred EEecCCCcEEEEECCCCce-----eeeeccc-----CccEEEEEEc----CCCcE-EEEecCCCeEEEEEecC------C
Q psy17863 71 ASGASDKSVILWEVTTGQP-----VRRWREH-----ASKVTCVKFN----EDSSV-VISGSQDNTVMMWDVKS------R 129 (341)
Q Consensus 71 ~~~~~dg~i~iw~~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~d~~i~iwd~~~------~ 129 (341)
++++.||.|++||+.+++. ...+..| ...|.+++|+ |++++ |++++.||.|++||++. .
T Consensus 85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS 164 (397)
T ss_dssp EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc
Confidence 9999999999999999887 8888888 5899999999 99999 99999999999999987 3
Q ss_pred CCc--------------------CeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceE
Q psy17863 130 SHH--------------------PIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHI 189 (341)
Q Consensus 130 ~~~--------------------~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (341)
+.. .+..+.+.+++.+++++.+|.|++||+++.+.+..+...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------ 226 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQ------------------ 226 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECC------------------
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEecc------------------
Confidence 321 122333333338999999999999999887655544320
Q ss_pred EEeCCCceEEEEcccccC---CCCeEEEEEccCCCEEEEeecC---CeEEEEeccccceeeeecC-------------cc
Q psy17863 190 MSACGNNVKLWTAEEDYG---QEPIVDACFTRDCQCILTCSTD---ECLRLFDKATGELLEEYKG-------------HK 250 (341)
Q Consensus 190 ~~~~~~~i~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~-------------~~ 250 (341)
..| ..++.+++|+|++++|++++.| +.|++||+++++.+..+.+ |.
T Consensus 227 ---------------~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (397)
T 1sq9_A 227 ---------------HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 291 (397)
T ss_dssp ---------------C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBS
T ss_pred ---------------ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccC
Confidence 002 4578899999999999999999 9999999999999999998 89
Q ss_pred cceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEee----ee---------------ccceEEEEEcCCC---
Q psy17863 251 SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS----VG---------------KAVVNSLCSHPTR--- 308 (341)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~---------------~~~v~~~~~~~~~--- 308 (341)
..+..+ +|+|++++|++++.||.|++||+.+++.+..+... .| ..+|++++|+|++
T Consensus 292 ~~v~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~ 369 (397)
T 1sq9_A 292 SWVMSL--SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS 369 (397)
T ss_dssp SCEEEE--EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB
T ss_pred CcEEEE--EECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccc
Confidence 988888 89999999999999999999999999888887611 24 8899999999998
Q ss_pred -------cEEEEeC-CCcEEEEEcccc
Q psy17863 309 -------KHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 309 -------~~l~~~~-d~~i~vw~~~~~ 327 (341)
++|++++ ||.|++|+++++
T Consensus 370 ~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 370 GMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp STTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cccccccceEEEecCCCcEEEEEcCCC
Confidence 7999999 999999999765
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-44 Score=292.00 Aligned_cols=283 Identities=21% Similarity=0.307 Sum_probs=238.2
Q ss_pred CceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
++++.+++.+|.+.|++++| |++++|++++.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 35788999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCC---ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 82 WEVTTG---QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 82 w~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
|++... +.+..+..|...|.++.| +++++++++.|+.|++||...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~------------------------------ 133 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGS------------------------------ 133 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTE------------------------------
T ss_pred EEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCCc------------------------------
Confidence 998765 557778889999999999 567999999999999998211
Q ss_pred ccCCcceeeeEeeecCceEEEEEECC-CCceEEEeC-CCceEEEEcccc------cCCCCeEEEEEccCCCEEEEeecCC
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHP-TRKHIMSAC-GNNVKLWTAEED------YGQEPIVDACFTRDCQCILTCSTDE 230 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~i~~~~~~~~------~~~~~i~~~~~~~~~~~l~~~~~d~ 230 (341)
....+ ..+...+.++.+.| ++..+++++ ++.+++||.... .+...+.+++|+|++. +++++.|+
T Consensus 134 -----~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg 205 (313)
T 3odt_A 134 -----LVYNL--QAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDG 205 (313)
T ss_dssp -----EEEEE--ECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTS
T ss_pred -----EEEec--ccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCC
Confidence 00011 11234466666655 555555544 467777774332 1678899999999999 99999999
Q ss_pred eEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcE
Q psy17863 231 CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKH 310 (341)
Q Consensus 231 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 310 (341)
.|++||+++++.+..+.+|...+..+ +++|++ .+++++.||.|++||+.+++++..+. .|...|.+++|+|++++
T Consensus 206 ~i~i~d~~~~~~~~~~~~~~~~i~~~--~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~i~~~~~~~~~~~ 280 (313)
T 3odt_A 206 LIKLVDMHTGDVLRTYEGHESFVYCI--KLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT--LPAISIWSVDCMSNGDI 280 (313)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEE--EECTTS-CEEEEETTSEEEEECTTTCCEEEEEE--CSSSCEEEEEECTTSCE
T ss_pred eEEEEECCchhhhhhhhcCCceEEEE--EEecCC-CEEEEecCCEEEEEECCCCceeEEEe--ccCceEEEEEEccCCCE
Confidence 99999999999999999999999888 899998 68999999999999999999999988 78889999999999995
Q ss_pred EEEeC-CCcEEEEEcccccCCc
Q psy17863 311 IMSAC-GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 311 l~~~~-d~~i~vw~~~~~~~~~ 331 (341)
++ ++ ||.|++|+++++....
T Consensus 281 ~~-~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 281 IV-GSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp EE-EETTSCEEEEESCGGGCCC
T ss_pred EE-EeCCCcEEEEeCCCCceee
Confidence 54 55 9999999999875443
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-44 Score=304.39 Aligned_cols=308 Identities=20% Similarity=0.371 Sum_probs=262.4
Q ss_pred eeeeEEeeeCCcE-EEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 4 TCVQTIDCKQGAI-RAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 4 ~~~~~l~~h~~~v-~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
+..+.+.+|.+.| .+ +++++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ ++++++++.||+|++|
T Consensus 109 ~~~~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 109 KSPKVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVW 184 (445)
T ss_dssp CCCEEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred ceeEEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEE
Confidence 4567899999875 55 45578999999999999999999999999999999999999997 6699999999999999
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------CcCeEEeecCCCceEEEeeccCeE
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~i 154 (341)
|+.+++.+..+.+|...|.++.|+ ++.+++++.||.|++||+++++ ...+.++.. .+..+++++.||.|
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i 261 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-DGRRVVSGAYDFMV 261 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-CSSCEEEEETTSCE
T ss_pred ECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-CCCEEEEEcCCCEE
Confidence 999999999999999999999996 5689999999999999998764 233444444 67789999999999
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccCCCEEEEe
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTC 226 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~ 226 (341)
++||+++.+....+.. +...+.++.+ ++..+++++ ++.+++||+.... +...+.++.+ ++++++++
T Consensus 262 ~iwd~~~~~~~~~~~~--~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~ 335 (445)
T 2ovr_B 262 KVWDPETETCLHTLQG--HTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSG 335 (445)
T ss_dssp EEEEGGGTEEEEEECC--CSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEE
T ss_pred EEEECCCCcEeEEecC--CCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEE
Confidence 9999998887766653 4456888888 666666665 6999999997654 5666776665 56799999
Q ss_pred ecCCeEEEEeccccceeeeecC---cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEe---eeeccceE
Q psy17863 227 STDECLRLFDKATGELLEEYKG---HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH---SVGKAVVN 300 (341)
Q Consensus 227 ~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~ 300 (341)
+.||.|++||+++++.+..+.+ |...+.++ +++ ++++++|+.||.|++||+.+++.+..+.. ..+.+.|.
T Consensus 336 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~--~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~ 411 (445)
T 2ovr_B 336 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL--QFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW 411 (445)
T ss_dssp ETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE--EEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEE
T ss_pred eCCCeEEEEECCCCcEEEEEccCCCCCCCEEEE--EEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEE
Confidence 9999999999999999998886 77778777 554 67999999999999999999999888831 25778999
Q ss_pred EEEEcCCCcEEEEeC-CCc----EEEEEccccc
Q psy17863 301 SLCSHPTRKHIMSAC-GNN----VKLWTAEEDY 328 (341)
Q Consensus 301 ~~~~~~~~~~l~~~~-d~~----i~vw~~~~~~ 328 (341)
+++|+|++.++++++ ||+ |.+||++.+.
T Consensus 412 ~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~~ 444 (445)
T 2ovr_B 412 RIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 444 (445)
T ss_dssp EEEECSSEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred EEEecCCEEEEEEcccCCCCccEEEEEECCCCC
Confidence 999999999999999 997 9999998753
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-45 Score=301.03 Aligned_cols=289 Identities=13% Similarity=0.209 Sum_probs=236.6
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEE-EEeC---CCeEEEEcCCCcceeeEe-cCcccceeEEEEecC---CCEEEEecCC
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCL-TCGS---DKKIKLWNPYRNLLLKTY-GGHAHEVNDATAACD---SSQIASGASD 76 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~-t~~~---dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~~~d 76 (341)
..+.+++|.+.|++++|+|+++.++ +|+. ||.|++||+.+++..... .+|...|.+++|+|+ +++|++++.|
T Consensus 10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 4456788999999999999996554 5555 899999999988765443 368999999999998 6999999999
Q ss_pred CcEEEEECCCCc-eeeeecccCccEEEEEE------cCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEee
Q psy17863 77 KSVILWEVTTGQ-PVRRWREHASKVTCVKF------NEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGS 149 (341)
Q Consensus 77 g~i~iw~~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 149 (341)
|.|++||+.+++ .+..+.+|...|.++.| +|++++|++++.||.|++||++++.....
T Consensus 90 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~--------------- 154 (357)
T 3i2n_A 90 GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA--------------- 154 (357)
T ss_dssp SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE---------------
T ss_pred CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce---------------
Confidence 999999999988 88899999999999955 67899999999999999999886541111
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEE----ECCCCceEEEeCC-CceEEEEccccc------CCCCeEEEEEcc
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLC----SHPTRKHIMSACG-NNVKLWTAEEDY------GQEPIVDACFTR 218 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~i~~~~~~~~~------~~~~i~~~~~~~ 218 (341)
.+..... .....+.+++ ++|+++++++++. +.+++||+.... +...+.+++|+|
T Consensus 155 ------~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~ 219 (357)
T 3i2n_A 155 ------NMEPVQG---------ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDR 219 (357)
T ss_dssp ------EECCCTT---------SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESC
T ss_pred ------eccccCC---------CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCC
Confidence 0000000 0122466666 7899999988875 899999998754 788999999999
Q ss_pred ---CCCEEEEeecCCeEEEEeccccceeeeec-----CcccceeEEEEEeCCCCC-EEEEecCCCcEEEEeeeCCC----
Q psy17863 219 ---DCQCILTCSTDECLRLFDKATGELLEEYK-----GHKSGDFRIECCLDSKDS-QIFCGSSDGKIYKWQLVDSS---- 285 (341)
Q Consensus 219 ---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~---- 285 (341)
++.++++++.||.|++||+++++.+..+. +|...+..+ +++|+++ ++++++.||.|++||+.++.
T Consensus 220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 297 (357)
T 3i2n_A 220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQV--RHLPQNRELFLTAGGAGGLHLWKYEYPIQRSK 297 (357)
T ss_dssp SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEE--EEETTEEEEEEEEETTSEEEEEEEECCSCC--
T ss_pred CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEE--EECCCCCcEEEEEeCCCcEEEeecCCCccccc
Confidence 99999999999999999999887766665 899998888 8899998 89999999999999998653
Q ss_pred ---------------ceEEEEeeeeccceEEEEEcCCCcEEE-EeC-CCcEEEEEcccc
Q psy17863 286 ---------------QISTLIHSVGKAVVNSLCSHPTRKHIM-SAC-GNNVKLWTAEED 327 (341)
Q Consensus 286 ---------------~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~vw~~~~~ 327 (341)
.+..+. .|..+|++++|+|++++|+ +++ |+.|++|++.+.
T Consensus 298 ~~~~g~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 298 KDSEGIEMGVAGSVSLLQNVT--LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCTTSCCCCCCCEEEEEEEEE--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred ccCCCCccccccccceeeccc--cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 344455 7899999999999999998 788 999999999764
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-45 Score=311.13 Aligned_cols=306 Identities=16% Similarity=0.130 Sum_probs=251.0
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeec
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 94 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 94 (341)
.+++++|+|++++|++++.||.|++||..+++....+..| ..+....|+|++++|++++.||.|++||+.+++....+.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 3458999999999999999999999999988877777766 455566789999999999999999999999999988888
Q ss_pred ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------cCeEEe-ecCCCceEEEeeccCeEEEEEccCCcce
Q psy17863 95 EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HPIQCC-LDSKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~-~~~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
.|...|.+++|+|++++|++++.|+.|++||+++++. ..+..+ ..+.+..+++++.||.|++||+++++..
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence 9999999999999999999999999999999987542 233433 3445668999999999999999998877
Q ss_pred eeeEeee-cC---------------------ceEEEEEECCCCceEEEeC-CCceEEEEccccc--------CCCCeEEE
Q psy17863 166 STLIHSV-GK---------------------AVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY--------GQEPIVDA 214 (341)
Q Consensus 166 ~~~~~~~-~~---------------------~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~--------~~~~i~~~ 214 (341)
..+.... .. ..+.+++|+|++++++++. ++.+++||+.... +...+.++
T Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 296 (420)
T 3vl1_A 217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL 296 (420)
T ss_dssp EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEE
T ss_pred EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeE
Confidence 7665321 22 3344455688998888876 5899999987643 67889999
Q ss_pred EEccCCC-EEEEeecCCeEEEEeccccce-eeeecC-cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc-----
Q psy17863 215 CFTRDCQ-CILTCSTDECLRLFDKATGEL-LEEYKG-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ----- 286 (341)
Q Consensus 215 ~~~~~~~-~l~~~~~d~~i~i~d~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----- 286 (341)
+|+|+++ +|++++.||.|++||+++++. +..+.. |...+..+ +.+++++|++++.||.|++|++...+.
T Consensus 297 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~ 373 (420)
T 3vl1_A 297 TVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV---YFAAGALFVSSGFDTSIKLDIISDPESERPAI 373 (420)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE---EEETTEEEEEETTTEEEEEEEECCTTCCSCEE
T ss_pred EEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE---EeCCCCEEEEecCCccEEEEeccCCCCCccce
Confidence 9999999 999999999999999998754 677776 55555555 445788999999999999999987422
Q ss_pred ----eEEEEeeeeccceEEEEEcCCCc----EEEEeCCCcEEEEEccc
Q psy17863 287 ----ISTLIHSVGKAVVNSLCSHPTRK----HIMSACGNNVKLWTAEE 326 (341)
Q Consensus 287 ----~~~~~~~~~~~~v~~~~~~~~~~----~l~~~~d~~i~vw~~~~ 326 (341)
...+. .+...|.+++|+|+++ +++++++|.+.+|+++.
T Consensus 374 ~~~~~~~~~--~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 374 EFETPTFLV--SNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CTTSCEEEC--CSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred eccCccEEc--cCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 22333 6788999999999999 55555599999999875
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=290.94 Aligned_cols=266 Identities=19% Similarity=0.236 Sum_probs=210.6
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC--cceeeEecCcccceeEEEEec--CCCEEEEecCCCcEEE
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR--NLLLKTYGGHAHEVNDATAAC--DSSQIASGASDKSVIL 81 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i 81 (341)
+..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+ .+.+.++.+|.++|.+++|+| ++++|++++.|++|++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 456789999999999999999999999999999999874 467889999999999999986 3899999999999999
Q ss_pred EECCCCc--eeeeecccCccEEEEEEcCC--CcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 82 WEVTTGQ--PVRRWREHASKVTCVKFNED--SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 82 w~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
||+++++ .+..+..|...|.+++|+|+ +.+|++++.|+.|++||++......
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~------------------------ 137 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS------------------------ 137 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC------------------------
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee------------------------
Confidence 9998874 55667789999999999997 8899999999999999987642100
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEec
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDK 237 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 237 (341)
......+...+.+++|+|++..-.. .....+++++|++|+.|+.|++||+
T Consensus 138 ---------~~~~~~h~~~v~~~~~~p~~~~~~~---------------------~~~~~~~~~~l~sgs~D~~v~lwd~ 187 (297)
T 2pm7_B 138 ---------PIIIDAHAIGVNSASWAPATIEEDG---------------------EHNGTKESRKFVTGGADNLVKIWKY 187 (297)
T ss_dssp ---------CEEEECCSSCEEEEEECCCC---------------------------------CCEEEEEETTSCEEEEEE
T ss_pred ---------eeeeecccCccceEeecCCcccccc---------------------cCCCCCCcceEEEEcCCCcEEEEEE
Confidence 0011123345667777765421100 0001234678999999999999999
Q ss_pred cccc----eeeeecCcccceeEEEEEeCCCC---CEEEEecCCCcEEEEeeeCCCc--e-EEEEeeeeccceEEEEEcCC
Q psy17863 238 ATGE----LLEEYKGHKSGDFRIECCLDSKD---SQIFCGSSDGKIYKWQLVDSSQ--I-STLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 238 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~--~-~~~~~~~~~~~v~~~~~~~~ 307 (341)
++++ ....+.+|...|..+ +|+|++ ++|++++.|++|++||+.+... . ..+....|...|.+++|+|+
T Consensus 188 ~~~~~~~~~~~~l~~H~~~V~~v--~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 265 (297)
T 2pm7_B 188 NSDAQTYVLESTLEGHSDWVRDV--AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS 265 (297)
T ss_dssp ETTTTEEEEEEEECCCSSCEEEE--EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS
T ss_pred cCCCceEEEEEEecCCCCceEEE--EECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCC
Confidence 8765 567889999999888 889984 8999999999999999987532 1 22211257789999999999
Q ss_pred CcEEEEeC-CCcEEEEEcccc
Q psy17863 308 RKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 308 ~~~l~~~~-d~~i~vw~~~~~ 327 (341)
+++||+++ |+.|++|+....
T Consensus 266 g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 266 GNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp SCCEEEEETTSCEEEEEECTT
T ss_pred CCEEEEEcCCCcEEEEEECCC
Confidence 99999999 999999998643
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=299.64 Aligned_cols=285 Identities=15% Similarity=0.256 Sum_probs=238.1
Q ss_pred CceeeeEEe-eeCCcEEEEEEccC----CCEEEEEeCCCeEEEEcCCCcceeeEecC-----cccceeEEEEecC----C
Q psy17863 2 EYTCVQTID-CKQGAIRAVRFNVD----GSYCLTCGSDKKIKLWNPYRNLLLKTYGG-----HAHEVNDATAACD----S 67 (341)
Q Consensus 2 ~~~~~~~l~-~h~~~v~~~~~~~~----~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-----~~~~v~~~~~~~~----~ 67 (341)
.|++.+.+. +|.++|++++|+|+ ...+++++.++.|++||+.+++.+..+.. |...|++++|+|+ +
T Consensus 6 ~~~~~~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 85 (366)
T 3k26_A 6 SFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH 85 (366)
T ss_dssp CCEEEEEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCC
T ss_pred EEEEEEEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCC
Confidence 344444444 89999999999984 45666777788999999998887777654 5577999999998 6
Q ss_pred CEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEE
Q psy17863 68 SQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIF 146 (341)
Q Consensus 68 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 146 (341)
++|++++.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++++
T Consensus 86 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------------- 149 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT---------------- 149 (366)
T ss_dssp EEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE----------------
T ss_pred CEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe----------------
Confidence 7999999999999999999999999999999999999999 99999999999999999987643
Q ss_pred EeeccCeEEEEEccCCcceeeeE-eeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc------------------
Q psy17863 147 CGSSDGKIYKWQLVDSSQISTLI-HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY------------------ 206 (341)
Q Consensus 147 ~~~~~g~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~------------------ 206 (341)
....+. ...+...+.+++|+|+++.+++++ ++.+++||+....
T Consensus 150 -----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 212 (366)
T 3k26_A 150 -----------------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNR 212 (366)
T ss_dssp -----------------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSS
T ss_pred -----------------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcc
Confidence 111110 012456799999999999888876 5899999987532
Q ss_pred -----------------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccce--------------eeeecCcccceeE
Q psy17863 207 -----------------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL--------------LEEYKGHKSGDFR 255 (341)
Q Consensus 207 -----------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------------~~~~~~~~~~~~~ 255 (341)
+...|.+++|+ ++++++++.|+.|++||+.+++. +..+..|...+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 290 (366)
T 3k26_A 213 PFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWY 290 (366)
T ss_dssp CCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSC
T ss_pred cccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEE
Confidence 77889999999 77999999999999999887644 7778889888888
Q ss_pred EEEEeCCC--CCEEEEecCCCcEEEEeeeCCCceE----EEEeeee--ccceEEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 256 IECCLDSK--DSQIFCGSSDGKIYKWQLVDSSQIS----TLIHSVG--KAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 256 ~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~--~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
+ +++|+ +++|++|+.||.|++||+.++++.. .+. .| ...|++++|+|++++|++++ ||.|++|++.
T Consensus 291 ~--~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 291 M--RFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT--HHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp C--CCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC--CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred E--EEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc--ccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 8 66666 9999999999999999999887543 454 44 78999999999999999999 9999999985
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-44 Score=339.55 Aligned_cols=322 Identities=18% Similarity=0.334 Sum_probs=277.9
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEec--CCCEEEEecCCCcEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC--DSSQIASGASDKSVI 80 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 80 (341)
.+++.++.+|.+.|++++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+| ++.++++++.|+.|+
T Consensus 647 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~ 726 (1249)
T 3sfz_A 647 GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726 (1249)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEE
T ss_pred CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEE
Confidence 356788999999999999999999999999999999999999999999999999999999999 556899999999999
Q ss_pred EEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC-----------------------------
Q psy17863 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH----------------------------- 131 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------------------------- 131 (341)
+||+.+++.+..+.+|...|.+++|+|+++++++++.||.|++||+.++..
T Consensus 727 vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 806 (1249)
T 3sfz_A 727 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW 806 (1249)
T ss_dssp EEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB
T ss_pred EEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE
Confidence 999999999999999999999999999999999999999999999865421
Q ss_pred ----------------------------------cC-eEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCce
Q psy17863 132 ----------------------------------HP-IQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV 176 (341)
Q Consensus 132 ----------------------------------~~-~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 176 (341)
.. ......+.+..+++++.+|.+++||+.+......+.. +...
T Consensus 807 s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~--h~~~ 884 (1249)
T 3sfz_A 807 SADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG--HLSW 884 (1249)
T ss_dssp CTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECC--CSSC
T ss_pred CCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCC--Cccc
Confidence 00 1112234455788889999999999988776665543 4567
Q ss_pred EEEEEECCCCceEEEeC-CCceEEEEcccc--------------------------------------------cCCCCe
Q psy17863 177 VNSLCSHPTRKHIMSAC-GNNVKLWTAEED--------------------------------------------YGQEPI 211 (341)
Q Consensus 177 ~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~--------------------------------------------~~~~~i 211 (341)
+.+++|+|+++.+++++ ++.+++|+.... .....+
T Consensus 885 v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 964 (1249)
T 3sfz_A 885 VHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQV 964 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCE
T ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcE
Confidence 99999999999888876 589999997531 034578
Q ss_pred EEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 212 VDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 212 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
.+++++|+++++++|+.+|.|++||+.+++....+.+|...+..+ +|+|+++++++++.||.|++||+.+++... +.
T Consensus 965 ~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l--~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~ 1041 (1249)
T 3sfz_A 965 SCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHI--QFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQ 1041 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCE--EECSSSSCEEEECSSSBEEEEETTTTEEEC-CB
T ss_pred EEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEE--EECCCCCEEEEEcCCCEEEEEECCCCceEE-Ee
Confidence 999999999999999999999999999999999999999999888 899999999999999999999998887653 33
Q ss_pred eeeeccceEEEEEcCCCcEEEEeCCCcEEEEEcccccCCc
Q psy17863 292 HSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQA 331 (341)
Q Consensus 292 ~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~~~~~ 331 (341)
.|...|.+++|+|++.+++.+.|+.|++|++.++....
T Consensus 1042 --~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~ 1079 (1249)
T 3sfz_A 1042 --AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIER 1079 (1249)
T ss_dssp --CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCE
T ss_pred --cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeE
Confidence 68899999999998765444449999999998765443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=299.77 Aligned_cols=286 Identities=13% Similarity=0.167 Sum_probs=241.6
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc--eeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECC
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL--LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 85 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 85 (341)
.+..|.++|++++|+|++++|++++.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||++
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 455699999999999999999999999999999998887 888899999999999999999999999999999999998
Q ss_pred CCceeee--ecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCc
Q psy17863 86 TGQPVRR--WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSS 163 (341)
Q Consensus 86 ~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~ 163 (341)
+++.... +..|...|.+++|+|++++|++++.|+.|++||++.......
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~----------------------------- 133 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV----------------------------- 133 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE-----------------------------
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCccee-----------------------------
Confidence 8875443 366899999999999999999999999999999987541100
Q ss_pred ceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcc------------------cc-------cCCCCeEEEEEc
Q psy17863 164 QISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE------------------ED-------YGQEPIVDACFT 217 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~------------------~~-------~~~~~i~~~~~~ 217 (341)
.......+...+.+++|+|+++++++++ ++.+++||+. .. .+...+.+++|+
T Consensus 134 --~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 211 (372)
T 1k8k_C 134 --CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS 211 (372)
T ss_dssp --EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC
T ss_pred --eeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC
Confidence 0011112345699999999999888876 6899999963 11 267789999999
Q ss_pred cCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC--CCc--e------
Q psy17863 218 RDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD--SSQ--I------ 287 (341)
Q Consensus 218 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~--~------ 287 (341)
|++++|++++.|+.|++||+++++.+..+..|...+..+ +|+|+++++++| .|+.|++|++.+ ++. +
T Consensus 212 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~ 288 (372)
T 1k8k_C 212 ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV--TFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVP 288 (372)
T ss_dssp SSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEE--EEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC
T ss_pred CCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEE--EEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcc
Confidence 999999999999999999999999999999999888887 888999888888 899999999988 421 0
Q ss_pred ------------------------------EEEEeeeeccceEEEEEc-CCC---cEEEEeC-CCcEEEEEccccc
Q psy17863 288 ------------------------------STLIHSVGKAVVNSLCSH-PTR---KHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 288 ------------------------------~~~~~~~~~~~v~~~~~~-~~~---~~l~~~~-d~~i~vw~~~~~~ 328 (341)
..+ ..+|..+|++++|+ ++| ++|++++ ||.|++|++.+..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 289 KQSSQRGLTARERFQNLDKKASSEGSAAAGAGL-DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp --------CHHHHHHHCCCCC---------CCC-SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccchhhhcchhhhhhhcccccccccCccccccc-cccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 111 12788999999966 666 9999999 9999999998754
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-44 Score=327.11 Aligned_cols=316 Identities=10% Similarity=0.068 Sum_probs=242.8
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCccee-----------eEecCcccceeEEEEecC-CCEEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLL-----------KTYGGHAHEVNDATAACD-SSQIA 71 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~-----------~~~~~~~~~v~~~~~~~~-~~~l~ 71 (341)
++++++. |.+.|++++|+|++++|++|+.||.|++||+.+++.. ..+.+|.+.|.+++|+|+ +..++
T Consensus 90 ~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 90 KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 4566665 7789999999999999999999999999999887753 234679999999999996 57899
Q ss_pred EecCCCcEEEEECCCCceeeeeccc------------------CccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCc-
Q psy17863 72 SGASDKSVILWEVTTGQPVRRWREH------------------ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH- 132 (341)
Q Consensus 72 ~~~~dg~i~iw~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~- 132 (341)
+|+.||.| +||+++++.+..+..| ...|.+++|+|++++|++++.||.|++||+++++..
T Consensus 169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 99999999 9999999888877655 577999999999999999999999999998654310
Q ss_pred -------------------------CeEEeec----CCC--ceEEEe---------------------------------
Q psy17863 133 -------------------------PIQCCLD----SKD--SQIFCG--------------------------------- 148 (341)
Q Consensus 133 -------------------------~~~~~~~----~~~--~~~~~~--------------------------------- 148 (341)
.+..+.+ .++ ..+++|
T Consensus 248 ~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~ 327 (902)
T 2oaj_A 248 ARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNY 327 (902)
T ss_dssp EECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHH
T ss_pred EEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhh
Confidence 1222222 111 233333
Q ss_pred -------------------------------------------eccCeEEEEEccCCcceee-------eEe--------
Q psy17863 149 -------------------------------------------SSDGKIYKWQLVDSSQIST-------LIH-------- 170 (341)
Q Consensus 149 -------------------------------------------~~~g~i~~~d~~~~~~~~~-------~~~-------- 170 (341)
+.||.+++||+.++..... +..
T Consensus 328 ~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~ 407 (902)
T 2oaj_A 328 YANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTS 407 (902)
T ss_dssp HHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEE
T ss_pred hcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEE
Confidence 2334444454433211110 000
Q ss_pred ------------------------eecCceEEEEEECCCCceEEEeC-CCceEEEEcccc------------------cC
Q psy17863 171 ------------------------SVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED------------------YG 207 (341)
Q Consensus 171 ------------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~------------------~~ 207 (341)
..+...+.+++++|+++.+++++ |++|++||+... .|
T Consensus 408 ~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h 487 (902)
T 2oaj_A 408 MAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAK 487 (902)
T ss_dssp EEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSS
T ss_pred EEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCC
Confidence 00011223345678898888876 589999998653 34
Q ss_pred CCCeEEEEEccCCCEEEEeecCCeEEEEeccccc---------------------------------------------e
Q psy17863 208 QEPIVDACFTRDCQCILTCSTDECLRLFDKATGE---------------------------------------------L 242 (341)
Q Consensus 208 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------------------------------------------~ 242 (341)
...|.+++|+|++++|++|+.||+|++||+.+++ +
T Consensus 488 ~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 567 (902)
T 2oaj_A 488 ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMP 567 (902)
T ss_dssp SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEE
T ss_pred CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccce
Confidence 5689999999999999999999999999998662 3
Q ss_pred eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE---e-eeeccceEEEEEc-----CCC---cE
Q psy17863 243 LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI---H-SVGKAVVNSLCSH-----PTR---KH 310 (341)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~-~~~~~~v~~~~~~-----~~~---~~ 310 (341)
+..+.+|...|+.+ +|+|+| +||+|+.|++|++||++++..+.... . .+|...|++++|+ ||| ++
T Consensus 568 ~~~l~~h~~~V~sv--afSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~ 644 (902)
T 2oaj_A 568 STAVHANKGKTSAI--NNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSIL 644 (902)
T ss_dssp EEEECCCSCSEEEE--EECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEE
T ss_pred eEEEEcCCCcEEEE--EecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceE
Confidence 67788999999988 899999 99999999999999987776654322 1 1678889999999 885 89
Q ss_pred EEEeC-CCcEEEEEc
Q psy17863 311 IMSAC-GNNVKLWTA 324 (341)
Q Consensus 311 l~~~~-d~~i~vw~~ 324 (341)
|++++ |++|++|++
T Consensus 645 l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 645 MVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEEETTSEEEEEEE
T ss_pred EEEEecCCcEEEEEE
Confidence 99999 999999999
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-45 Score=307.92 Aligned_cols=289 Identities=15% Similarity=0.175 Sum_probs=222.7
Q ss_pred eeeeEEeeeCCcEEEEEEcc-CCCEEEEEeCCCeEEEEcCCCccee--eEecCcccceeEEEEec-CCCEEEEecCCCcE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRNLLL--KTYGGHAHEVNDATAAC-DSSQIASGASDKSV 79 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 79 (341)
+......+|...|+||+|+| ++++||+|+.||.|+|||+.+++.. ..+.+|.+.|++++|+| ++++|++++.||+|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 45567788999999999999 5679999999999999999876544 34568999999999998 68899999999999
Q ss_pred EEEECCCCceeeeec--ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 80 ILWEVTTGQPVRRWR--EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
++||++++....... .+...+.+++|+|++++|++|+.||.|++||++....
T Consensus 190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~-------------------------- 243 (435)
T 4e54_B 190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL-------------------------- 243 (435)
T ss_dssp EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBC--------------------------
T ss_pred EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCccee--------------------------
Confidence 999998765433333 2345678999999999999999999999999864321
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCc-eEEEe-CCCceEEEEccccc----------CCCCeEEEEEccCCCEEEE
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRK-HIMSA-CGNNVKLWTAEEDY----------GQEPIVDACFTRDCQCILT 225 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~ 225 (341)
..+ ..+...|.+++|+|++. +++++ .++.|++||+.... |..+|.+++|+|+|++|++
T Consensus 244 --------~~~--~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s 313 (435)
T 4e54_B 244 --------WNL--RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT 313 (435)
T ss_dssp --------CCS--BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEE
T ss_pred --------EEE--ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEE
Confidence 011 11344577888888765 34443 35778888875422 6788999999999999999
Q ss_pred eecCCeEEEEeccccceeeeecCcccc----eeEEEEEeCCCCCEEEEec------------CCCcEEEEeeeCCCceEE
Q psy17863 226 CSTDECLRLFDKATGELLEEYKGHKSG----DFRIECCLDSKDSQIFCGS------------SDGKIYKWQLVDSSQIST 289 (341)
Q Consensus 226 ~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~ 289 (341)
++.|+.|++||+.+++....+..|... ...+...++|++.+++++. .++.|++||..+++.+..
T Consensus 314 ~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~ 393 (435)
T 4e54_B 314 TDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ 393 (435)
T ss_dssp EESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE
T ss_pred EcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE
Confidence 999999999999998877777655432 2223335666666665543 346799999999998887
Q ss_pred EEeeeeccceEEE-EEcCCCcEEEEeCCCcEEEEEcccccC
Q psy17863 290 LIHSVGKAVVNSL-CSHPTRKHIMSACGNNVKLWTAEEDYG 329 (341)
Q Consensus 290 ~~~~~~~~~v~~~-~~~~~~~~l~~~~d~~i~vw~~~~~~~ 329 (341)
+.. +|...|.++ +|+|+|++|++|+|+.|+||+++++..
T Consensus 394 l~~-~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 394 LYD-PESSGISSLNEFNPMGDTLASAMGYHILIWSQQEART 433 (435)
T ss_dssp ECC-SSCCCCCCEEEECTTSSCEEEECSSEEEECCCC----
T ss_pred EeC-CCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCee
Confidence 753 577788887 699999999998888999999987653
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=312.22 Aligned_cols=319 Identities=14% Similarity=0.174 Sum_probs=244.5
Q ss_pred eeeeEEeeeCCc-EEEEEEcc--CCCEEEEEeCCCeEEEEcCCCc--------ceeeEecCcccceeEEEEec-------
Q psy17863 4 TCVQTIDCKQGA-IRAVRFNV--DGSYCLTCGSDKKIKLWNPYRN--------LLLKTYGGHAHEVNDATAAC------- 65 (341)
Q Consensus 4 ~~~~~l~~h~~~-v~~~~~~~--~~~~l~t~~~dg~i~iw~~~~~--------~~~~~~~~~~~~v~~~~~~~------- 65 (341)
+..+.+.+|.+. |++++|+| ++++|++++.||.|++||+.++ +....+..|...|.+++|+|
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence 678899999999 99999999 9999999999999999999744 45555555555555555554
Q ss_pred -------------------------------------CCC-EEEEecCCCcEEEEECCCCceeeeecccCc---cEEEEE
Q psy17863 66 -------------------------------------DSS-QIASGASDKSVILWEVTTGQPVRRWREHAS---KVTCVK 104 (341)
Q Consensus 66 -------------------------------------~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~v~~~~ 104 (341)
+++ .+++++.|+.|++||+.+++.+..+..|.. .|.+++
T Consensus 134 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 213 (615)
T 1pgu_A 134 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE 213 (615)
T ss_dssp EECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred eccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEE
Confidence 444 677778889999999999999999999999 999999
Q ss_pred EcCC-CcEEEEecCCCeEEEEEecCCC------------CcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEee
Q psy17863 105 FNED-SSVVISGSQDNTVMMWDVKSRS------------HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS 171 (341)
Q Consensus 105 ~~~~-~~~l~~~~~d~~i~iwd~~~~~------------~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 171 (341)
|+|+ +++|++++.||.|++||+++++ ...+..+.+..+..+++++.|+.+++||+++.+....+...
T Consensus 214 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 293 (615)
T 1pgu_A 214 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD 293 (615)
T ss_dssp ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCC
Confidence 9999 9999999999999999987643 12333333346678999999999999999988877766543
Q ss_pred e--cCceEEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCC-------------------------------
Q psy17863 172 V--GKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEP------------------------------- 210 (341)
Q Consensus 172 ~--~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~------------------------------- 210 (341)
. ....+..+.+. ++..+++++ ++.+++|++.... |..+
T Consensus 294 ~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~ 372 (615)
T 1pgu_A 294 KQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHS 372 (615)
T ss_dssp TTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCC
T ss_pred CCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCccc
Confidence 1 12445566664 444444443 4677777755311 2222
Q ss_pred --eEEEEE----------------------------------ccC-----------------------------------
Q psy17863 211 --IVDACF----------------------------------TRD----------------------------------- 219 (341)
Q Consensus 211 --i~~~~~----------------------------------~~~----------------------------------- 219 (341)
|.+++| +|+
T Consensus 373 ~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (615)
T 1pgu_A 373 NLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 452 (615)
T ss_dssp SCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred CceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEE
Confidence 222222 111
Q ss_pred ---CCEEEEeec-CCeEEEEecccccee-eeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeee
Q psy17863 220 ---CQCILTCST-DECLRLFDKATGELL-EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV 294 (341)
Q Consensus 220 ---~~~l~~~~~-d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 294 (341)
++++++++. |+.|++||+.+++.. ..+.+|...+..+ +++|++++|++++.||.|++||+.+++.+..+. .
T Consensus 453 ~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~--~ 528 (615)
T 1pgu_A 453 SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI--SISPSETYIAAGDVMGKILLYDLQSREVKTSRW--A 528 (615)
T ss_dssp EECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEE--EECTTSSEEEEEETTSCEEEEETTTTEEEECCS--C
T ss_pred EEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEE--EECCCCCEEEEcCCCCeEEEeeCCCCcceeEee--c
Confidence 445555555 666666666655544 5667788888877 899999999999999999999999999888776 5
Q ss_pred -eccceEEEEEcC----------CCcEEEEeC-CCcEEEEEcccc
Q psy17863 295 -GKAVVNSLCSHP----------TRKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 295 -~~~~v~~~~~~~----------~~~~l~~~~-d~~i~vw~~~~~ 327 (341)
|...|++++|+| ++++|++++ |+.|++|++.+.
T Consensus 529 ~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 529 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 899999999999 999999999 999999999876
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=301.93 Aligned_cols=306 Identities=18% Similarity=0.303 Sum_probs=254.6
Q ss_pred eeeEEeeeCCcE-EEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 5 CVQTIDCKQGAI-RAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 5 ~~~~l~~h~~~v-~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
...++.+|.+.| .++.+ ++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++ ++++|+.||+|++||
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd 189 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD 189 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence 567899999885 66666 56799999999999999999999999999999999999999988 999999999999999
Q ss_pred CCCCceeeeecccCccEEEEEEc--CCCcEEEEecCCCeEEEEEecCCCCcC---------------------e------
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFN--EDSSVVISGSQDNTVMMWDVKSRSHHP---------------------I------ 134 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~---------------------~------ 134 (341)
+++++.+..+.+|...|.+++|+ ++++++++++.|+.|++||+++..... .
T Consensus 190 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (464)
T 3v7d_B 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC
T ss_pred CCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc
Confidence 99999999999999999999998 578999999999999999998754211 0
Q ss_pred ---EEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc----
Q psy17863 135 ---QCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY---- 206 (341)
Q Consensus 135 ---~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~---- 206 (341)
.......+..+++++.||.|++||+++.+.+..+.. +...+.+++++|+++.+++++ ++.+++||+....
T Consensus 270 ~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 347 (464)
T 3v7d_B 270 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG--HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 347 (464)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC--CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence 111233456899999999999999998887776644 456799999999999888877 5899999997643
Q ss_pred ---CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 207 ---GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 207 ---~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
|...+.+++++ ++++++++.||.|++||+.+++...... +...+..+ +++++++++++|+ ||.|++||+.+
T Consensus 348 ~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~--~~~~~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 348 LQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAIT--TFYVSDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp ECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEE--EEEECSSEEEEEE-TTEEEEEETTT
T ss_pred EeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEE--EEEeCCCEEEEec-CCeEEEEECCC
Confidence 78899999997 5789999999999999999887665554 44445555 7889999999998 89999999999
Q ss_pred CCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEE
Q psy17863 284 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWT 323 (341)
Q Consensus 284 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~ 323 (341)
++.+..... .|...|.+++|+ +..++++++ |+.+.+|-
T Consensus 422 g~~~~~~~~-~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 422 GKLVHANIL-KDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp CCEEESCTT-TTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CcEEehhhc-cCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 998876322 678999999997 345555555 77665554
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=286.97 Aligned_cols=248 Identities=19% Similarity=0.254 Sum_probs=215.9
Q ss_pred ceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEE
Q psy17863 46 LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125 (341)
Q Consensus 46 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 125 (341)
+..+++.+|...|.+++|+|++++|++++.||+|++||+++++.+..+..|..+|.+++|+|++++|++++.|+.|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccc
Q psy17863 126 VKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 204 (341)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~ 204 (341)
+++++ .+..+. .+...|.+++++|+++++++++ ++.+++||+..
T Consensus 84 ~~~~~---------------------------------~~~~~~--~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~ 128 (304)
T 2ynn_A 84 YNTGE---------------------------------KVVDFE--AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128 (304)
T ss_dssp TTTCC---------------------------------EEEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG
T ss_pred CCCCc---------------------------------EEEEEe--CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC
Confidence 87654 111221 2456699999999999888876 58999999876
Q ss_pred c--------cCCCCeEEEEEcc-CCCEEEEeecCCeEEEEeccccceeeeec-CcccceeEEEEEeCCCCCEEEEecCCC
Q psy17863 205 D--------YGQEPIVDACFTR-DCQCILTCSTDECLRLFDKATGELLEEYK-GHKSGDFRIECCLDSKDSQIFCGSSDG 274 (341)
Q Consensus 205 ~--------~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg 274 (341)
. .|...|.+++|+| ++..|++|+.|+.|++||+.++.....+. +|...+..+.+...+++++|++|+.|+
T Consensus 129 ~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~ 208 (304)
T 2ynn_A 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL 208 (304)
T ss_dssp TTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTS
T ss_pred CcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCC
Confidence 4 2788999999999 67899999999999999998877666554 455677777555566889999999999
Q ss_pred cEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 275 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 275 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
+|++||+++++++..+. +|...|.+++|+|++++|++++ |+.|++||+.+....
T Consensus 209 ~i~iWd~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~ 263 (304)
T 2ynn_A 209 TIKIWDYQTKSCVATLE--GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263 (304)
T ss_dssp EEEEEETTTTEEEEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred eEEEEeCCCCccceeeC--CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 99999999999999998 8999999999999999999999 999999999876543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-44 Score=299.81 Aligned_cols=241 Identities=24% Similarity=0.443 Sum_probs=213.9
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
++.+++++|.+.|++++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 141 ~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd 220 (410)
T 1vyh_C 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220 (410)
T ss_dssp CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------CcCeEEeecCC--------------
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCLDSK-------------- 141 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~-------------- 141 (341)
+++++++..+.+|...|.++.++|++.+|++++.|+.|++||+.++. ...+.++.+.+
T Consensus 221 ~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 300 (410)
T 1vyh_C 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 300 (410)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred CCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence 99999999999999999999999999999999999999999998754 22334443333
Q ss_pred -------CceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEE
Q psy17863 142 -------DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDA 214 (341)
Q Consensus 142 -------~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~ 214 (341)
+..+++|+.|+.|++||++++..+..+.. |...|.++
T Consensus 301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~------------------------------------h~~~v~~v 344 (410)
T 1vyh_C 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG------------------------------------HDNWVRGV 344 (410)
T ss_dssp -------CCEEEEEETTSEEEEEETTTTEEEEEEEC------------------------------------CSSCEEEE
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC------------------------------------CCCcEEEE
Confidence 44788888888888888887665544432 35678899
Q ss_pred EEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeee
Q psy17863 215 CFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 282 (341)
Q Consensus 215 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (341)
+|+|++++|++++.|+.|++||+.+++++..+.+|...|..+ +|+|++++|++|+.||+|++|+++
T Consensus 345 ~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l--~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 345 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL--DFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE--EECSSSSCEEEEETTSEEEEEC--
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE--EEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999999999999999999999999888 899999999999999999999863
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=286.41 Aligned_cols=240 Identities=15% Similarity=0.262 Sum_probs=217.4
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEEC
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 84 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 84 (341)
+...+.+|...|.+++|+|++.++++++.|++|++||+.+++.+..+..|...+.+++|+|++++|++++.||.|++|++
T Consensus 72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~ 151 (321)
T 3ow8_A 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV 151 (321)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcc
Q psy17863 85 TTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 164 (341)
Q Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~ 164 (341)
++++....+..|...|.+++|+|++++|++++.||.|++||+++++ .
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~---------------------------------~ 198 (321)
T 3ow8_A 152 ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK---------------------------------L 198 (321)
T ss_dssp TTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------------------------E
T ss_pred CCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---------------------------------E
Confidence 9999999999999999999999999999999999999999987643 1
Q ss_pred eeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEe
Q psy17863 165 ISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFD 236 (341)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 236 (341)
+..+ ..+...+.+++|+|+++++++++. +.+++||+.... |...|.+++|+|++++|++++.|+.|++||
T Consensus 199 ~~~~--~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd 276 (321)
T 3ow8_A 199 LHTL--EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD 276 (321)
T ss_dssp EEEE--CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEE--cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEe
Confidence 1111 123456889999999999988874 889999987643 778899999999999999999999999999
Q ss_pred ccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEee
Q psy17863 237 KATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 281 (341)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (341)
+.+++++..+.+|...+..+ +|+|++++|++++.||.|++||.
T Consensus 277 ~~~~~~~~~~~~h~~~v~~v--~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 277 VGTRTCVHTFFDHQDQVWGV--KYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp TTTTEEEEEECCCSSCEEEE--EECTTSSEEEEEETTCCEEEEEC
T ss_pred CCCCEEEEEEcCCCCcEEEE--EECCCCCEEEEEeCCCeEEEEeC
Confidence 99999999999999999888 89999999999999999999996
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-44 Score=303.06 Aligned_cols=298 Identities=13% Similarity=0.217 Sum_probs=233.3
Q ss_pred ceeeeEE-eeeCCcEEEEEEcc-CCCEEEEEeCCCeEEEEcCCC---cc---eeeEecCcccceeEEEEecCCCEEEEec
Q psy17863 3 YTCVQTI-DCKQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYR---NL---LLKTYGGHAHEVNDATAACDSSQIASGA 74 (341)
Q Consensus 3 ~~~~~~l-~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~---~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 74 (341)
.+++.++ ++|.+.|++++|+| ++++|++|+.||+|++||+.+ +. ....+ .|...|.+++|+|++++|++++
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s 130 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSS 130 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEe
Confidence 4567788 88999999999999 999999999999999999876 33 23333 4899999999999999999999
Q ss_pred CCCcEEEEECC---CCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeecc
Q psy17863 75 SDKSVILWEVT---TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSD 151 (341)
Q Consensus 75 ~dg~i~iw~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (341)
.||.|++||++ +++....+..| .+..+.|+|++ ..+..+.++ ....+.+..+++++.|
T Consensus 131 ~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~------~~~~~~~~~-----------~~~~~~~~~l~~~~~d 191 (437)
T 3gre_A 131 KDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG------KNEYAVRMR-----------AFVNEEKSLLVALTNL 191 (437)
T ss_dssp TTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS------SCCCEEEEE-----------EEECSSCEEEEEEETT
T ss_pred CCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc------cccCceEEE-----------EEEcCCCCEEEEEeCC
Confidence 99999999995 66666666555 66667766532 111111111 1122345567777777
Q ss_pred CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc--------CCCCeEEEEEc----c
Q psy17863 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY--------GQEPIVDACFT----R 218 (341)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~--------~~~~i~~~~~~----~ 218 (341)
+.|++||+++.+.+..+....+...+.+++++|+++++++++ ++.+++||++... +..+|.+++++ |
T Consensus 192 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~ 271 (437)
T 3gre_A 192 SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGK 271 (437)
T ss_dssp SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCT
T ss_pred CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCC
Confidence 777777777777777776544567899999999999998876 5889999987532 56689999555 5
Q ss_pred CCCEEEEeecCCeEEEEeccccceeeeecCc--------------------------ccceeEEEEEeCCCCCEEEEecC
Q psy17863 219 DCQCILTCSTDECLRLFDKATGELLEEYKGH--------------------------KSGDFRIECCLDSKDSQIFCGSS 272 (341)
Q Consensus 219 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~l~~~~~ 272 (341)
++.+|++++.|+.|++||+++++.+..+.+| ...+..+ +++ ++++|++|+.
T Consensus 272 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l--~~~-~~~~l~s~~~ 348 (437)
T 3gre_A 272 NSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI--SVS-NDKILLTDEA 348 (437)
T ss_dssp TEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE--EEE-TTEEEEEEGG
T ss_pred CccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEE--EEC-CceEEEecCC
Confidence 6889999999999999999998887777654 3445555 666 6789999999
Q ss_pred CCcEEEEeeeCCCceEEEEee-----------------------------------eeccceEEEEEcCC--CcEEEEeC
Q psy17863 273 DGKIYKWQLVDSSQISTLIHS-----------------------------------VGKAVVNSLCSHPT--RKHIMSAC 315 (341)
Q Consensus 273 dg~i~iwd~~~~~~~~~~~~~-----------------------------------~~~~~v~~~~~~~~--~~~l~~~~ 315 (341)
||.|++||+.+++....+... .|...|++++|+++ +.+|++++
T Consensus 349 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~ 428 (437)
T 3gre_A 349 TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACD 428 (437)
T ss_dssp GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEE
T ss_pred CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEc
Confidence 999999999999887776621 17899999999998 88999999
Q ss_pred -CCcEEEEE
Q psy17863 316 -GNNVKLWT 323 (341)
Q Consensus 316 -d~~i~vw~ 323 (341)
||.|+||+
T Consensus 429 ~dG~I~iw~ 437 (437)
T 3gre_A 429 NSGLIGIFQ 437 (437)
T ss_dssp TTSCEEEEC
T ss_pred CCceEEEeC
Confidence 99999995
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-44 Score=306.67 Aligned_cols=311 Identities=13% Similarity=0.083 Sum_probs=227.9
Q ss_pred EEeeeCCcEEEEEEccCC---------CEEEE-------------------EeCCCeEEEEcCCCccee----eEecCcc
Q psy17863 8 TIDCKQGAIRAVRFNVDG---------SYCLT-------------------CGSDKKIKLWNPYRNLLL----KTYGGHA 55 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~---------~~l~t-------------------~~~dg~i~iw~~~~~~~~----~~~~~~~ 55 (341)
++. +.+.|.+++|+|++ ++||+ ++.|++|+|||+.+++.. ..+..|.
T Consensus 129 ~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~ 207 (524)
T 2j04_B 129 IYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSF 207 (524)
T ss_dssp EEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECC
T ss_pred EEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecC
Confidence 444 67889999999876 56666 446889999998776642 3456678
Q ss_pred cceeEEEEecC------CCEEEEecCCCcEEEEECCCCce-----------eeeecccCccEEEEEEcCCCcEEEEecCC
Q psy17863 56 HEVNDATAACD------SSQIASGASDKSVILWEVTTGQP-----------VRRWREHASKVTCVKFNEDSSVVISGSQD 118 (341)
Q Consensus 56 ~~v~~~~~~~~------~~~l~~~~~dg~i~iw~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 118 (341)
+.|.+++|+|+ +.+|++++.||+|++||+.+++. ...+.+|...|++++|++++ .|++|+.|
T Consensus 208 ~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~D 286 (524)
T 2j04_B 208 GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKN 286 (524)
T ss_dssp CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETT
T ss_pred CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCC
Confidence 89999999996 57999999999999999987642 23677899999999999864 89999999
Q ss_pred CeEEEEEecCCC---------CcCeEEe--ecCCC--ceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCC
Q psy17863 119 NTVMMWDVKSRS---------HHPIQCC--LDSKD--SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 185 (341)
Q Consensus 119 ~~i~iwd~~~~~---------~~~~~~~--~~~~~--~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (341)
|+|++||++++. ...+..+ .++++ ..+++++.|++|++||+++.+....+..+.....+.+++|+|+
T Consensus 287 gtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~ 366 (524)
T 2j04_B 287 GFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQ 366 (524)
T ss_dssp SEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETT
T ss_pred CEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCC
Confidence 999999998653 1234444 34554 5889999999999999998887766655433334788999999
Q ss_pred CceEEEeCC-CceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcc-----cc
Q psy17863 186 RKHIMSACG-NNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK-----SG 252 (341)
Q Consensus 186 ~~~~~~~~~-~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~ 252 (341)
++.++++++ +.+++||++... |...|.+++|+|++++|++|+.|++|++||+... .+..+..+. ..
T Consensus 367 ~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~ 445 (524)
T 2j04_B 367 IYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLR 445 (524)
T ss_dssp TTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCE
T ss_pred cCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeE
Confidence 988887764 789999987643 7889999999999999999999999999998643 332222111 12
Q ss_pred eeEEEEEeCCCCCEEEEecCCCcEEEEeee-CCCceEEEEeeeeccceEEEEEcCCCc---EEEEeC-CCcEEEEEcccc
Q psy17863 253 DFRIECCLDSKDSQIFCGSSDGKIYKWQLV-DSSQISTLIHSVGKAVVNSLCSHPTRK---HIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~-d~~i~vw~~~~~ 327 (341)
+. .++++|+++.+. ...+ +.+|+.. ++..+..+. +|...|.+++|+|+++ .+|+|+ ||.|+||++..+
T Consensus 446 v~--~v~~sp~g~~~~-~~~~--~~~~~~~~~g~~~~~l~--gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 446 LW--KWDYSIKDDKYR-IDSS--YEVYPLTVNDVSKAKID--AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp EE--ECBCCSSSCEEE-ECCC--CCCCC---------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred EE--EeccCCCCCeEE-ccCC--ceecccccCCcceeeec--CCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 33 448999998553 2222 3344432 566777777 8999999999999964 999999 999999998765
Q ss_pred c
Q psy17863 328 Y 328 (341)
Q Consensus 328 ~ 328 (341)
.
T Consensus 519 ~ 519 (524)
T 2j04_B 519 H 519 (524)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-44 Score=290.11 Aligned_cols=269 Identities=18% Similarity=0.257 Sum_probs=203.5
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc--eeeEecCcccceeEEEEec--CCCEEEEecCCCcEEE
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL--LLKTYGGHAHEVNDATAAC--DSSQIASGASDKSVIL 81 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i 81 (341)
...+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++ .+..+.+|...|.+++|+| ++++|++++.|++|++
T Consensus 6 ~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp --------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 34567999999999999999999999999999999998764 4678899999999999986 4899999999999999
Q ss_pred EECCCCc--eeeeecccCccEEEEEEcCC--CcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 82 WEVTTGQ--PVRRWREHASKVTCVKFNED--SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 82 w~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
||+++++ ....+.+|...|.+++|+|+ +.+|++++.|+.|++||++.... |
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~-------------------------~ 140 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ-------------------------W 140 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC-------------------------E
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC-------------------------c
Confidence 9998874 56677889999999999997 78999999999999999876421 0
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEec
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDK 237 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 237 (341)
.... . ...+...+.+++|+|+...- .+ .+.. .. ...+++++|++++.|+.|++||+
T Consensus 141 ~~~~-----~--~~~h~~~v~~~~~~~~~~~~------~~--~~~~----~~-----~~~~~~~~l~sgs~D~~v~lWd~ 196 (316)
T 3bg1_A 141 EVKK-----I--NNAHTIGCNAVSWAPAVVPG------SL--IDHP----SG-----QKPNYIKRFASGGCDNLIKLWKE 196 (316)
T ss_dssp EECC-----B--TTSSSSCBCCCEECCCCCC--------------C----CS-----CCCCCCCBEECCBTTSBCCEEEE
T ss_pred ceee-----e--eccccCCcceEEEccccCCc------cc--cccc----cc-----cCccccceEEEecCCCeEEEEEe
Confidence 0000 0 01122345556666653200 00 0000 00 01123578999999999999998
Q ss_pred ccc---ceeeeecCcccceeEEEEEeCCCC----CEEEEecCCCcEEEEeeeCCC----ceEEEEeeeeccceEEEEEcC
Q psy17863 238 ATG---ELLEEYKGHKSGDFRIECCLDSKD----SQIFCGSSDGKIYKWQLVDSS----QISTLIHSVGKAVVNSLCSHP 306 (341)
Q Consensus 238 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~ 306 (341)
+.. +++..+.+|...|..+ +|+|++ ++|++++.||+|++|++.+.. ....+. .|...|.+++|+|
T Consensus 197 ~~~~~~~~~~~l~~h~~~V~~v--~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp 272 (316)
T 3bg1_A 197 EEDGQWKEEQKLEAHSDWVRDV--AWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH--KFNDVVWHVSWSI 272 (316)
T ss_dssp CTTSCEEEEECCBCCSSCEEEE--ECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE--ECSSCEEEEEECT
T ss_pred CCCCccceeeecccCCCceEEE--EecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh--cCCCcEEEEEEcC
Confidence 754 4677889999999888 888986 789999999999999987632 223344 6789999999999
Q ss_pred CCcEEEEeC-CCcEEEEEcccc
Q psy17863 307 TRKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 307 ~~~~l~~~~-d~~i~vw~~~~~ 327 (341)
++++||+++ |+.|++|+....
T Consensus 273 ~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 273 TANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp TTCCEEEEESSSCEEEEEECTT
T ss_pred CCCEEEEEcCCCeEEEEEECCC
Confidence 999999999 999999998643
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=293.65 Aligned_cols=277 Identities=12% Similarity=0.102 Sum_probs=217.3
Q ss_pred CCcEEEEEEccCCCEEEEEeCC-------CeEEEEcCCCcce----------eeEecCcccceeEEEEecCCCEEEEe--
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSD-------KKIKLWNPYRNLL----------LKTYGGHAHEVNDATAACDSSQIASG-- 73 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~d-------g~i~iw~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~-- 73 (341)
.-||.+++|+||+++|++|+.+ +.|++|++..... ...+..|...+.+++++ ++.+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 4589999999999999998754 3599999765432 12456788888888765 5566654
Q ss_pred ---------cCCCcEEEEECCCCceeee---------ecccCccEEEEEEcCCCcEEEEe--cCCCeEEEEEecCCCCcC
Q psy17863 74 ---------ASDKSVILWEVTTGQPVRR---------WREHASKVTCVKFNEDSSVVISG--SQDNTVMMWDVKSRSHHP 133 (341)
Q Consensus 74 ---------~~dg~i~iw~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~ 133 (341)
+.|+.+++|++........ ...+...+.+++|+|||++++++ +.|++|++||+++.+
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~--- 168 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT--- 168 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE---
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc---
Confidence 4578899999876532211 12344568999999999987654 457777777766432
Q ss_pred eEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc-------
Q psy17863 134 IQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY------- 206 (341)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------- 206 (341)
....+. +...|.+++|+|+++++++++++.+.+|+.....
T Consensus 169 ------------------------------~~~~~~---~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~ 215 (365)
T 4h5i_A 169 ------------------------------EKFEIE---TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTD 215 (365)
T ss_dssp ------------------------------EEEEEE---CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECC
T ss_pred ------------------------------EEEEeC---CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeec
Confidence 222322 3345899999999999999999888888876533
Q ss_pred --CCCCeEEEEEccCCCEEEEeecCC----eEEEEeccccce----eeeecCcccceeEEEEEeCCCCCEEEEecCCCcE
Q psy17863 207 --GQEPIVDACFTRDCQCILTCSTDE----CLRLFDKATGEL----LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKI 276 (341)
Q Consensus 207 --~~~~i~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 276 (341)
+...+.+++|+|+++++++++.|+ .+++|++..... ...+.+|...|.++ +|+|+|++||+|+.|++|
T Consensus 216 ~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~Spdg~~lasgs~D~~V 293 (365)
T 4h5i_A 216 FDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSM--DVDMKGELAVLASNDNSI 293 (365)
T ss_dssp CCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEE--EECTTSCEEEEEETTSCE
T ss_pred CCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeE--EECCCCCceEEEcCCCEE
Confidence 567899999999999999999887 688899876543 45677888888887 899999999999999999
Q ss_pred EEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 277 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 277 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
+|||+++++++..+.. +|..+|++++|+|||++||+++ |++|+||++++.+..
T Consensus 294 ~iwd~~~~~~~~~~~~-gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~ 347 (365)
T 4h5i_A 294 ALVKLKDLSMSKIFKQ-AHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYAN 347 (365)
T ss_dssp EEEETTTTEEEEEETT-SSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC
T ss_pred EEEECCCCcEEEEecC-cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcC
Confidence 9999999998887532 7999999999999999999999 999999999866543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-43 Score=291.36 Aligned_cols=286 Identities=16% Similarity=0.218 Sum_probs=232.1
Q ss_pred CceeeeEEeeeCCcEEEEEEccC---CCEEEEEeCCCeEEEEcCCC-ccee-eEecCcccceeEEEEecCCCEEEEecCC
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVD---GSYCLTCGSDKKIKLWNPYR-NLLL-KTYGGHAHEVNDATAACDSSQIASGASD 76 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~---~~~l~t~~~dg~i~iw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d 76 (341)
|++.++.+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+|++++|++++.|
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 56778889999999999999999 69999999999999999987 5444 7788899999999999999999999999
Q ss_pred CcEEEEECCCCceeeeecccCccEEEEEE--cCCCcEEEEecCCCeEEEEEecCCCCcCe------EEeecCCCceEEEe
Q psy17863 77 KSVILWEVTTGQPVRRWREHASKVTCVKF--NEDSSVVISGSQDNTVMMWDVKSRSHHPI------QCCLDSKDSQIFCG 148 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~------~~~~~~~~~~~~~~ 148 (341)
|.|++||+++++.+. +..|...|.+++| +|++++|++++.||.|++||+++++.... ..........++++
T Consensus 108 g~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 3mmy_A 108 KTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVA 186 (368)
T ss_dssp SEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEE
T ss_pred CcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEE
Confidence 999999999988766 5569999999999 89999999999999999999987652111 11112223467778
Q ss_pred eccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCE----EE
Q psy17863 149 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQC----IL 224 (341)
Q Consensus 149 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~----l~ 224 (341)
+.++.+.+|+++............ ......++.+.++... ++
T Consensus 187 ~~~~~i~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~ 232 (368)
T 3mmy_A 187 TAERGLIVYQLENQPSEFRRIESP----------------------------------LKHQHRCVAIFKDKQNKPTGFA 232 (368)
T ss_dssp EGGGCEEEEECSSSCEEEEECCCS----------------------------------CSSCEEEEEEEECTTSCEEEEE
T ss_pred eCCCcEEEEEeccccchhhhcccc----------------------------------ccCCCceEEEcccCCCCCCeEE
Confidence 888888888887654332221111 1233445555554443 99
Q ss_pred EeecCCeEEEEecccc---ceeeeecCccc------------ceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEE
Q psy17863 225 TCSTDECLRLFDKATG---ELLEEYKGHKS------------GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST 289 (341)
Q Consensus 225 ~~~~d~~i~i~d~~~~---~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 289 (341)
+++.|+.|++||++.. +.+..+.+|.. .+..+ +++|++++|++++.||.|++||+.+++++..
T Consensus 233 ~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (368)
T 3mmy_A 233 LGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGI--AFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310 (368)
T ss_dssp EEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEE--EECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred EecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEE--EEecCCCEEEEEccCCeEEEEECCCCcEEEE
Confidence 9999999999999877 56777888776 57776 8999999999999999999999999999988
Q ss_pred EEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 290 LIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 290 ~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
+. .|..+|++++|+|++++|++++ |+..+.|++-.
T Consensus 311 ~~--~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 311 SE--QLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp CC--CCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred ec--CCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 88 8899999999999999999999 87666555443
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=283.57 Aligned_cols=252 Identities=17% Similarity=0.248 Sum_probs=219.4
Q ss_pred cceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEE
Q psy17863 45 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 124 (341)
Q Consensus 45 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 124 (341)
.+...++.+|.+.|++++|+|++++|++++.||+|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.+++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccc
Q psy17863 125 DVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 204 (341)
Q Consensus 125 d~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (341)
++.+..... ..... ...+...+.++.+++++.++.++.++.+++||+..
T Consensus 125 ~~~~~~~~~-----------------------------~~~~~--~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~ 173 (340)
T 1got_B 125 NLKTREGNV-----------------------------RVSRE--LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173 (340)
T ss_dssp ETTTCSBSC-----------------------------EEEEE--EECCSSCEEEEEEEETTEEEEEETTSCEEEEETTT
T ss_pred ECccCCCcc-----------------------------eeEEE--ecCCCccEEEEEECCCCcEEEEECCCcEEEEECCC
Confidence 987643110 00111 12244568899999999877777789999999876
Q ss_pred cc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEE
Q psy17863 205 DY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIY 277 (341)
Q Consensus 205 ~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 277 (341)
.. |...|.+++|+|+++++++|+.|+.|++||+++++.+..+.+|...+..+ +|+|++++|++|+.||.|+
T Consensus 174 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v--~~~p~~~~l~s~s~d~~v~ 251 (340)
T 1got_B 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI--CFFPNGNAFATGSDDATCR 251 (340)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEE--EECTTSSEEEEEETTSCEE
T ss_pred CcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEE--EEcCCCCEEEEEcCCCcEE
Confidence 43 78899999999999999999999999999999999999999999999888 8999999999999999999
Q ss_pred EEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccC
Q psy17863 278 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 278 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~ 329 (341)
+||+++++.+..+....+...|++++|+|++++|++++ |+.|++||+.+...
T Consensus 252 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~ 304 (340)
T 1got_B 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304 (340)
T ss_dssp EEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred EEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcE
Confidence 99999988777765333445799999999999999999 99999999876543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=300.26 Aligned_cols=284 Identities=15% Similarity=0.131 Sum_probs=224.1
Q ss_pred eEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCc--ceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEEC
Q psy17863 7 QTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN--LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 84 (341)
Q Consensus 7 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 84 (341)
..++.|.++|++++|+|++++|++|+.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 5 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred eeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 345567889999999999999999999999999999888 788889999999999999999999999999999999999
Q ss_pred CCCc---eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccC
Q psy17863 85 TTGQ---PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVD 161 (341)
Q Consensus 85 ~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~ 161 (341)
.+++ ....+..|...|.+++|+|++++|++++.|+.|++||++..+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---------------------------- 136 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW---------------------------- 136 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CC----------------------------
T ss_pred CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccce----------------------------
Confidence 9887 667778899999999999999999999999999999987654100
Q ss_pred CcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccc------------------------cCCCCeEEEEE
Q psy17863 162 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED------------------------YGQEPIVDACF 216 (341)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~------------------------~~~~~i~~~~~ 216 (341)
....+. ..+...+.+++|+|+++++++++ ++.+++|++... .|...|.+++|
T Consensus 137 --~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 213 (377)
T 3dwl_C 137 --VSKHLK-RPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGF 213 (377)
T ss_dssp --CCEEEC-SSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEE
T ss_pred --eeeEee-cccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEE
Confidence 011111 11456799999999999888876 589999998421 36778999999
Q ss_pred ccCCCEEEEeecCCeEEEEeccccce----eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc------
Q psy17863 217 TRDCQCILTCSTDECLRLFDKATGEL----LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ------ 286 (341)
Q Consensus 217 ~~~~~~l~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------ 286 (341)
+|++++|++++.|+.|++||+.+++. +..+.+|...+..+ +|+|++++|++|+.++.+ +|+......
T Consensus 214 sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~ 290 (377)
T 3dwl_C 214 SPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSL--LWANESAIVAAGYNYSPI-LLQGNESGWAHTRDL 290 (377)
T ss_dssp CTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEE--EEEETTEEEEEESSSSEE-EECCCC---CCSBCC
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEE--EEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeee
Confidence 99999999999999999999999887 88899999999888 889999999999876666 666542110
Q ss_pred ---------------------e---------EEEE--------------eeeeccceEEEEEcCCCc----EEEEeC-CC
Q psy17863 287 ---------------------I---------STLI--------------HSVGKAVVNSLCSHPTRK----HIMSAC-GN 317 (341)
Q Consensus 287 ---------------------~---------~~~~--------------~~~~~~~v~~~~~~~~~~----~l~~~~-d~ 317 (341)
. ..+. ...|...|+++++.+... .|++++ ||
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg 370 (377)
T 3dwl_C 291 DAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDG 370 (377)
T ss_dssp CSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTS
T ss_pred cccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCC
Confidence 0 0010 012889999999766542 699999 99
Q ss_pred cEEEEEc
Q psy17863 318 NVKLWTA 324 (341)
Q Consensus 318 ~i~vw~~ 324 (341)
.|++|++
T Consensus 371 ~i~iWdl 377 (377)
T 3dwl_C 371 RVVLWTL 377 (377)
T ss_dssp EEEEECC
T ss_pred cEEEecC
Confidence 9999985
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-42 Score=282.94 Aligned_cols=237 Identities=16% Similarity=0.237 Sum_probs=195.4
Q ss_pred eeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeE----ecCcccceeEEEEecCCCEEEEecCCCcEEEEECC
Q psy17863 10 DCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKT----YGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 85 (341)
Q Consensus 10 ~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 85 (341)
..|...|++++|+|++ .|++|+.||+|+|||+.+++.+.. +.+|...|++++|+|++++|++|+.|++|++||++
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 3467889999999986 688999999999999998876544 34899999999999999999999999999999999
Q ss_pred CCceeeeecccCccEEEEEEcCCC-cEEEEecCCCeEEEEEecCCCC----------cCeEEeecCC--CceEEEeeccC
Q psy17863 86 TGQPVRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSH----------HPIQCCLDSK--DSQIFCGSSDG 152 (341)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~~--~~~~~~~~~~g 152 (341)
+++++..+.+|...|.+++|++++ .+|++++.|+.|++||+++++. ..+..+.+.+ ...+++|+.||
T Consensus 158 ~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp TTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred CCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 999999999999999999999987 4789999999999999987652 1223333332 34677888888
Q ss_pred eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCC-CEEEEeecCCe
Q psy17863 153 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDC-QCILTCSTDEC 231 (341)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~ 231 (341)
.|++||+++++.+..+.. |...|++++|+|++ ++|++|+.|++
T Consensus 238 ~v~~wd~~~~~~~~~~~~------------------------------------h~~~v~~v~fsp~g~~~lasgs~D~~ 281 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAV------------------------------------HSQCVTGLVFSPHSVPFLASLSEDCS 281 (344)
T ss_dssp EEEEEESCC--CCEEEEC------------------------------------CSSCEEEEEECSSSSCCEEEEETTSC
T ss_pred cEEEEECCCCcEEEEEcC------------------------------------CCCCEEEEEEccCCCeEEEEEeCCCe
Confidence 899998888776655532 35678888888887 57899999999
Q ss_pred EEEEeccccceeeeecCcccceeEEEEEeCCCCC-EEEEecCCCcEEEEeeeCCCc
Q psy17863 232 LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS-QIFCGSSDGKIYKWQLVDSSQ 286 (341)
Q Consensus 232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~ 286 (341)
|++||+++++.+ .+.+|...|..+ +|+|+++ +|++++.||+|++|++.+...
T Consensus 282 i~vwd~~~~~~~-~~~~H~~~V~~v--~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 282 LAVLDSSLSELF-RSQAHRDFVRDA--TWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEECTTCCEEE-EECCCSSCEEEE--EECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEEECCCCcEE-EEcCCCCCEEEE--EEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 999999988764 578999999888 8999886 577899999999999876543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=285.86 Aligned_cols=281 Identities=17% Similarity=0.257 Sum_probs=230.6
Q ss_pred eeCCc--EEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecC-cccceeEEEEecCCCEEEEecCCCcEEEEECCCC
Q psy17863 11 CKQGA--IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG-HAHEVNDATAACDSSQIASGASDKSVILWEVTTG 87 (341)
Q Consensus 11 ~h~~~--v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 87 (341)
+|... +.+++|++ ..+++++.|+.|++||+.+++....+.. |...|.+++|+|++++|++++.||.|++||+.++
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 56554 44466654 5688888999999999999988877765 7899999999999999999999999999999999
Q ss_pred ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceee
Q psy17863 88 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST 167 (341)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~ 167 (341)
+.+..+..|...|.+++|+ ++.+++++.||.|++||++.... ....
T Consensus 167 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--------------------------------~~~~ 212 (401)
T 4aez_A 167 TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANH--------------------------------QIGT 212 (401)
T ss_dssp CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSC--------------------------------EEEE
T ss_pred eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcc--------------------------------eeeE
Confidence 9999999999999999994 56999999999999999874321 1111
Q ss_pred eEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccCCC-EEEEee--cCCeEEEEe
Q psy17863 168 LIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQ-CILTCS--TDECLRLFD 236 (341)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~-~l~~~~--~d~~i~i~d 236 (341)
+ ..+...+.+++|+|+++++++++ ++.+++||+.... +...+.+++|+|++. ++++++ .|+.|++||
T Consensus 213 ~--~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d 290 (401)
T 4aez_A 213 L--QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN 290 (401)
T ss_dssp E--ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEE
T ss_pred E--cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEE
Confidence 1 12456799999999999888877 5899999987643 778999999999765 455544 799999999
Q ss_pred ccccceeeeecCcccceeEEEEEeCCCCCEEEE--ecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEe
Q psy17863 237 KATGELLEEYKGHKSGDFRIECCLDSKDSQIFC--GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 314 (341)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 314 (341)
+.+++.+..+. +...+..+ +|+|+++++++ |+.||.|++||+.+++.........|...|.+++|+|++++|+++
T Consensus 291 ~~~~~~~~~~~-~~~~v~~~--~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 367 (401)
T 4aez_A 291 AATGARVNTVD-AGSQVTSL--IWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTA 367 (401)
T ss_dssp TTTCCEEEEEE-CSSCEEEE--EECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEE
T ss_pred CCCCCEEEEEe-CCCcEEEE--EECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEE
Confidence 99999988886 45567766 89999999998 558999999999997766655444899999999999999999999
Q ss_pred C-CCcEEEEEcccccCCcc
Q psy17863 315 C-GNNVKLWTAEEDYGQAG 332 (341)
Q Consensus 315 ~-d~~i~vw~~~~~~~~~~ 332 (341)
+ ||.|++|++.++.....
T Consensus 368 ~~dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 368 ASDENLKFWRVYDGDHVKR 386 (401)
T ss_dssp CTTSEEEEEECCC------
T ss_pred eCCCcEEEEECCCCccccc
Confidence 9 99999999988765443
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-42 Score=286.59 Aligned_cols=268 Identities=19% Similarity=0.235 Sum_probs=213.7
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCC--CcceeeEecCcccceeEEEEecC--CCEEEEecCCCcE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPY--RNLLLKTYGGHAHEVNDATAACD--SSQIASGASDKSV 79 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i 79 (341)
++++.+++|.+.|++++|+|++++|++|+.||.|++||+. +++.+..+.+|...|++++|+++ +++|++++.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4678899999999999999999999999999999999987 66778889999999999999977 8999999999999
Q ss_pred EEEECCCCc--eeeeecccCccEEEEEEcCC--CcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEE
Q psy17863 80 ILWEVTTGQ--PVRRWREHASKVTCVKFNED--SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIY 155 (341)
Q Consensus 80 ~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 155 (341)
++||+.+++ .+..+..|...|.+++|+|+ +.+|++++.|+.|++||++.......
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~--------------------- 140 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP--------------------- 140 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE---------------------
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee---------------------
Confidence 999999987 67778889999999999998 89999999999999999886531111
Q ss_pred EEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEE
Q psy17863 156 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLF 235 (341)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 235 (341)
.....+...+.+++|+|...... ......+++.++++++.|+.|++|
T Consensus 141 ------------~~~~~~~~~v~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~~~~~dg~i~i~ 187 (379)
T 3jrp_A 141 ------------IIIDAHAIGVNSASWAPATIEED---------------------GEHNGTKESRKFVTGGADNLVKIW 187 (379)
T ss_dssp ------------EEEECCTTCEEEEEECCCC-------------------------------CTTCEEEEEETTSCEEEE
T ss_pred ------------EEecCCCCceEEEEEcCcccccc---------------------ccccCCCCCCEEEEEeCCCeEEEE
Confidence 11111223344444444321110 001113378999999999999999
Q ss_pred eccccc----eeeeecCcccceeEEEEEeCCC---CCEEEEecCCCcEEEEeeeCCCce---EEEEeeeeccceEEEEEc
Q psy17863 236 DKATGE----LLEEYKGHKSGDFRIECCLDSK---DSQIFCGSSDGKIYKWQLVDSSQI---STLIHSVGKAVVNSLCSH 305 (341)
Q Consensus 236 d~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~ 305 (341)
|+++++ ....+.+|...+..+ +|+|+ +++|++++.||.|++||+.+++.. ..+....|...|.+++|+
T Consensus 188 d~~~~~~~~~~~~~~~~h~~~v~~~--~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s 265 (379)
T 3jrp_A 188 KYNSDAQTYVLESTLEGHSDWVRDV--AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS 265 (379)
T ss_dssp EEETTTTEEEEEEEECCCSSCEEEE--EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC
T ss_pred EecCCCcceeeEEEEecccCcEeEE--EECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEc
Confidence 998764 456778899999888 89999 899999999999999999887532 222222478899999999
Q ss_pred CCCcEEEEeC-CCcEEEEEcccc
Q psy17863 306 PTRKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 306 ~~~~~l~~~~-d~~i~vw~~~~~ 327 (341)
|++++|++++ ||.|++|++...
T Consensus 266 ~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 266 LSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCEEEEecCCCcEEEEeCCCC
Confidence 9999999999 999999999853
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=280.38 Aligned_cols=278 Identities=13% Similarity=0.073 Sum_probs=231.9
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc---eeeEecCcccceeEEEEecCCC-EEEEecCCCcE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL---LLKTYGGHAHEVNDATAACDSS-QIASGASDKSV 79 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i 79 (341)
+.+....+|.+.|++++|+|++++|++++.||.|++|++.+++ ....+..|...|.+++|+|+++ +|++++.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred cceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence 3445567899999999999999999999999999999998776 3455567999999999999999 99999999999
Q ss_pred EEEEC-CCCceeeeecc--cCccEEEEEEcCCCcEEEEecCCCeEEEEEecC---------CC-------CcCeEEeecC
Q psy17863 80 ILWEV-TTGQPVRRWRE--HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS---------RS-------HHPIQCCLDS 140 (341)
Q Consensus 80 ~iw~~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---------~~-------~~~~~~~~~~ 140 (341)
++||+ .+++. ..+.. |...|.+++|+| +++|++++.|+.|++||+++ .+ ...+..+...
T Consensus 82 ~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 159 (342)
T 1yfq_A 82 LKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN 159 (342)
T ss_dssp EEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC
T ss_pred EEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEec
Confidence 99999 77654 67778 999999999999 99999999999999999876 33 1234444455
Q ss_pred CCceEEEeeccCeEEEEEccC-CcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEcc-
Q psy17863 141 KDSQIFCGSSDGKIYKWQLVD-SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTR- 218 (341)
Q Consensus 141 ~~~~~~~~~~~g~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~- 218 (341)
++. +++++.++.|++||+++ .......... .+...+.+++|+|
T Consensus 160 ~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~----------------------------------~~~~~i~~i~~~~~ 204 (342)
T 1yfq_A 160 SSR-LIVGMNNSQVQWFRLPLCEDDNGTIEES----------------------------------GLKYQIRDVALLPK 204 (342)
T ss_dssp SSE-EEEEESTTEEEEEESSCCTTCCCEEEEC----------------------------------SCSSCEEEEEECSG
T ss_pred CCc-EEEEeCCCeEEEEECCccccccceeeec----------------------------------CCCCceeEEEECCC
Confidence 554 88888888888888876 4332211111 1356788899999
Q ss_pred CCCEEEEeecCCeEEEEecccc------ceeeeecCccc---------ceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 219 DCQCILTCSTDECLRLFDKATG------ELLEEYKGHKS---------GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 219 ~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
+++++++++.||.+++|+++.. +....+..|.. .+..+ +|+|++++|++++.||.|++||+.+
T Consensus 205 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~s~~~~~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI--EFSPRHKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp GGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEE--EECTTTCCEEEEETTSCEEEEETTT
T ss_pred CCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEE--EEcCCCCEEEEecCCceEEEEcCcc
Confidence 9999999999999999999877 77788888865 77777 8999999999999999999999999
Q ss_pred CCceEEEEeeee-ccceEEEEEcCCCcEEEEeC-CCc-EEEEEc
Q psy17863 284 SSQISTLIHSVG-KAVVNSLCSHPTRKHIMSAC-GNN-VKLWTA 324 (341)
Q Consensus 284 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-d~~-i~vw~~ 324 (341)
++.+..+. .| ..+|.+++ |++++|++++ ||. .+.|..
T Consensus 283 ~~~~~~~~--~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 283 RKKIKNFA--KFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp TEEEEECC--CCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred HhHhhhhh--cccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 99988887 77 89999999 9999999999 998 555553
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=286.05 Aligned_cols=273 Identities=16% Similarity=0.289 Sum_probs=220.1
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec--CcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeee
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG--GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 92 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 92 (341)
.++.|+||++ ++||+|. |++|+|||..+++....+. +|...|++++|+|++++|++|+.||.|++||+++++.+..
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 4678999976 4777765 9999999999998877664 6778899999999999999999999999999999999999
Q ss_pred ecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC---------cCe-EEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 93 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH---------HPI-QCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---------~~~-~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
+.+|...+.++.++ +..|++++.|+.+++||...... ..+ .....+.+..+++++.|+.+++|+...+
T Consensus 185 ~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 185 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence 99999999998885 67999999999999999876432 122 2334455668888899999999998776
Q ss_pred cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCC-EEE--EeecCCeEEEEeccc
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQ-CIL--TCSTDECLRLFDKAT 239 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~-~l~--~~~~d~~i~i~d~~~ 239 (341)
+......... ..+...|.+++|+|++. .++ .|+.|+.|++||+.+
T Consensus 263 ~~~~~~~~~~--------------------------------~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t 310 (420)
T 4gga_A 263 EGGWVPLQTF--------------------------------TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 310 (420)
T ss_dssp SSCSCCSEEE--------------------------------CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT
T ss_pred cccceeeeee--------------------------------cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc
Confidence 5332211100 11345566677777543 343 356899999999999
Q ss_pred cceeeeecCcccceeEEEEEeCCCCCEEEEec--CCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-C
Q psy17863 240 GELLEEYKGHKSGDFRIECCLDSKDSQIFCGS--SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G 316 (341)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d 316 (341)
++.+..+..+.. +..+ .++++++.+++++ .|+.|+|||+.+++++..+. +|.+.|++++|+|||++|++++ |
T Consensus 311 ~~~~~~~~~~~~-v~~~--~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~--gH~~~V~~l~~spdg~~l~S~s~D 385 (420)
T 4gga_A 311 GACLSAVDAHSQ-VCSI--LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--GHTSRVLSLTMSPDGATVASAAAD 385 (420)
T ss_dssp TEEEEEEECSSC-EEEE--EEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSCEEEEETT
T ss_pred cccceeeccccc-eeee--eecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEEEEecC
Confidence 999988886654 4444 7889998887654 79999999999999999998 8999999999999999999999 9
Q ss_pred CcEEEEEccccc
Q psy17863 317 NNVKLWTAEEDY 328 (341)
Q Consensus 317 ~~i~vw~~~~~~ 328 (341)
++|+||++.+..
T Consensus 386 ~tvriWdv~~~~ 397 (420)
T 4gga_A 386 ETLRLWRCFELD 397 (420)
T ss_dssp TEEEEECCSCSS
T ss_pred CeEEEEECCCCC
Confidence 999999997643
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-42 Score=281.88 Aligned_cols=270 Identities=19% Similarity=0.199 Sum_probs=222.2
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCc----ceeeEecCcccceeEEEEec--CCCEEEEecCCCc
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN----LLLKTYGGHAHEVNDATAAC--DSSQIASGASDKS 78 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~ 78 (341)
..+.+.+|.+.|++++|+|++++|++|+.||.|++||+.++ +....+.+|...|++++|+| ++++|++++.||.
T Consensus 3 ~~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~ 82 (351)
T 3f3f_A 3 MQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82 (351)
T ss_dssp CCCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred ccccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence 34567899999999999999999999999999999999876 46677789999999999999 6999999999999
Q ss_pred EEEEECCCC---------ceeeeecccCccEEEEEEcCC--CcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEE
Q psy17863 79 VILWEVTTG---------QPVRRWREHASKVTCVKFNED--SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFC 147 (341)
Q Consensus 79 i~iw~~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 147 (341)
|++||++++ +.+..+..|...|.+++|+|+ +++|++++.||.|++||+++.+.......
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---------- 152 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTL---------- 152 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEE----------
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccc----------
Confidence 999999887 557778889999999999998 99999999999999999987652111000
Q ss_pred eeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC---CCEEE
Q psy17863 148 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD---CQCIL 224 (341)
Q Consensus 148 ~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~---~~~l~ 224 (341)
. ..+..+.+. ...+...+.+++|+|+ +.+++
T Consensus 153 -----------------------~---~~~~~~~~~--------------------~~~~~~~~~~~~~~p~~~~~~~l~ 186 (351)
T 3f3f_A 153 -----------------------T---SEMKVLSIP--------------------PANHLQSDFCLSWCPSRFSPEKLA 186 (351)
T ss_dssp -----------------------E---EEEESCSCC--------------------CSSCSCCCEEEEECCCSSSCCEEE
T ss_pred -----------------------c---ccccccccc--------------------cCCcccceeEEEeccCCCCCcEEE
Confidence 0 000001111 1124567888999997 89999
Q ss_pred EeecCCeEEEEeccccce--eeeecCcccceeEEEEEeCCCC----CEEEEecCCCcEEEEeeeCC--------------
Q psy17863 225 TCSTDECLRLFDKATGEL--LEEYKGHKSGDFRIECCLDSKD----SQIFCGSSDGKIYKWQLVDS-------------- 284 (341)
Q Consensus 225 ~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~iwd~~~~-------------- 284 (341)
+++.++.+.+|+...++. +..+.+|...+..+ +|+|++ ++|++|+.||.|++||+.++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~--~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 264 (351)
T 3f3f_A 187 VSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSI--SWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSN 264 (351)
T ss_dssp EEETTEEEEEEECTTSCEEEEEECCCCCSCEEEE--EECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------
T ss_pred EecCCCcEEEEccCCCceeeeeecCCCCcceeEE--EECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCccccee
Confidence 999999998888777664 77788999999888 899998 89999999999999999875
Q ss_pred --------------------------------CceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCc
Q psy17863 285 --------------------------------SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 285 --------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~ 331 (341)
+.+..+. .|...|++++|+|++++|++++ ||.|++|++..+....
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 265 MFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD--DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp --------------------------CCSEEEEEEEEEC--TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred ccCCCcccccccccccccccceeeeecccccccEEEEEe--cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence 3344444 6889999999999999999999 9999999999876555
Q ss_pred cce
Q psy17863 332 GLS 334 (341)
Q Consensus 332 ~~~ 334 (341)
.+.
T Consensus 343 ~~~ 345 (351)
T 3f3f_A 343 CMS 345 (351)
T ss_dssp EEE
T ss_pred hee
Confidence 444
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-41 Score=273.38 Aligned_cols=286 Identities=16% Similarity=0.254 Sum_probs=224.1
Q ss_pred CCceeeeEEeee--CC--cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec--CcccceeEEEEecCCCEEEEec
Q psy17863 1 MEYTCVQTIDCK--QG--AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG--GHAHEVNDATAACDSSQIASGA 74 (341)
Q Consensus 1 ~~~~~~~~l~~h--~~--~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~ 74 (341)
+|..+.+.|.+- .+ ..++|+||+++ +||+|. |++|+|||+.+++.+..+. +|...|++++|+|++++|++|+
T Consensus 9 ~p~~p~rvldap~~~~d~y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs 86 (318)
T 4ggc_A 9 IPSLPDRILDAPEIRNDYYLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGT 86 (318)
T ss_dssp CCSSCSEEEECTTCCCCTTCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cCCCCCEEeeCCCCcccccceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEE
Confidence 345566666532 22 35789999986 777764 9999999999999887764 6778899999999999999999
Q ss_pred CCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC----------cCeEEeecCCCce
Q psy17863 75 SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH----------HPIQCCLDSKDSQ 144 (341)
Q Consensus 75 ~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~~~~~ 144 (341)
.||+|++||+++++.+..+.+|...+.++.+. +..+++++.++.+++|+...... ..........+..
T Consensus 87 ~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (318)
T 4ggc_A 87 SSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH 164 (318)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSE
T ss_pred CCCcEEEeecCCceeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCE
Confidence 99999999999999999999999988876654 67899999999999999876532 1223344556678
Q ss_pred EEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCE--
Q psy17863 145 IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQC-- 222 (341)
Q Consensus 145 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~-- 222 (341)
+++++.|+.|++||+++++.......... .+...+..+.++|++..
T Consensus 165 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--------------------------------~~~~~v~~~~~~~~~~~~~ 212 (318)
T 4ggc_A 165 LASGGNDNLVNVWPSAPGEGGWVPLQTFT--------------------------------QHQGAVKAVAWCPWQSNVL 212 (318)
T ss_dssp EEEEETTSCEEEEESSCBTTBSCCSEEEC--------------------------------CCCSCEEEEEECTTSTTEE
T ss_pred EEEEecCcceeEEECCCCcccccceeeec--------------------------------ccCCceEEEEecCCCCcEE
Confidence 99999999999999987664332221111 12344555666665432
Q ss_pred -EEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEe--cCCCcEEEEeeeCCCceEEEEeeeeccce
Q psy17863 223 -ILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG--SSDGKIYKWQLVDSSQISTLIHSVGKAVV 299 (341)
Q Consensus 223 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 299 (341)
+++++.++.|++||........... +...+..+ .++++++.++++ +.|+.|++||+.+++++..+. +|.+.|
T Consensus 213 ~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~--~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~--gH~~~V 287 (318)
T 4ggc_A 213 ATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSI--LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK--GHTSRV 287 (318)
T ss_dssp EEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEE--EEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC--CCSSCE
T ss_pred EEEecCCCCEEEEEeccccccccccc-ceeeeeee--eecccccceEEEEEcCCCEEEEEECCCCcEEEEEc--CCCCCE
Confidence 3467788999999998887766554 44556655 788888877654 489999999999999999998 899999
Q ss_pred EEEEEcCCCcEEEEeC-CCcEEEEEcccc
Q psy17863 300 NSLCSHPTRKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 300 ~~~~~~~~~~~l~~~~-d~~i~vw~~~~~ 327 (341)
++++|+|++++|++++ |++|+|||+.+.
T Consensus 288 ~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 288 LSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999999999999999 999999998654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=273.26 Aligned_cols=268 Identities=15% Similarity=0.244 Sum_probs=230.1
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCccee---eEec--CcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLL---KTYG--GHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~---~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
...+|.+.|++++|+|++++|++++ ||.|++||+.+++.. ..+. .|...|.+++|+|++++|++++.||.|++|
T Consensus 46 ~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~ 124 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEE
T ss_pred eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 3447999999999999999999999 999999999876533 3333 789999999999999999999999999999
Q ss_pred ECCCCc--eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------CcCeEEee-cCCCceEEEeecc
Q psy17863 83 EVTTGQ--PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCL-DSKDSQIFCGSSD 151 (341)
Q Consensus 83 ~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~-~~~~~~~~~~~~~ 151 (341)
|+.+++ ....+..|...+.+++|+|+++++++++.||.|++||+++++ ...+..+. .+.+..+++++.|
T Consensus 125 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp ECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence 999887 566778899999999999999999999999999999988753 23344443 4456689999999
Q ss_pred CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc------CCCCeEEEEEccCCCEEE
Q psy17863 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY------GQEPIVDACFTRDCQCIL 224 (341)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~ 224 (341)
|.+++||+++.+....+. ....+.+++++|+++.++++. ++.+++|++.... +..++.+++|+|++++++
T Consensus 205 g~i~~~d~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 281 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHD---FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFV 281 (337)
T ss_dssp SEEEEEETTTTEEEEEEE---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CcEEEEECCCCceEeeec---CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEE
Confidence 999999999887766653 456799999999999998877 5899999997643 788999999999999999
Q ss_pred EeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeee
Q psy17863 225 TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 282 (341)
Q Consensus 225 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (341)
+++.||.|++||+.+++.+... .|...+..+ +++|++++|++++.||.|++|++.
T Consensus 282 ~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~--~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 282 STGKDNLLNAWRTPYGASIFQS-KESSSVLSC--DISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEETTSEEEEEETTTCCEEEEE-ECSSCEEEE--EECTTSCEEEEEETTSCEEEEEEE
T ss_pred EecCCCcEEEEECCCCeEEEEe-cCCCcEEEE--EECCCCCEEEEecCCCeEEEEEEe
Confidence 9999999999999998887554 467777777 899999999999999999999974
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-41 Score=282.23 Aligned_cols=289 Identities=20% Similarity=0.244 Sum_probs=232.7
Q ss_pred eeeeEEeeeCCcEEEEEEcc-CCCEEEEEeCCCeEEEEcCCCcceeeEec-------------CcccceeEEEEec-CCC
Q psy17863 4 TCVQTIDCKQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYG-------------GHAHEVNDATAAC-DSS 68 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~~ 68 (341)
+....+.+|.+.|++++|+| ++++|++|+.||.|++||+.+++....+. +|...|.+++|+| +++
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 34567888999999999999 99999999999999999999877655543 5999999999999 778
Q ss_pred EEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCC---CcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceE
Q psy17863 69 QIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED---SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQI 145 (341)
Q Consensus 69 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 145 (341)
+|++++.||.|++||+.+++....+. +...+.++.+++. +.++++++.|+.|++||+++++
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--------------- 177 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS--------------- 177 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC---------------
T ss_pred EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc---------------
Confidence 99999999999999999998888776 7788999999984 4488899888888888887643
Q ss_pred EEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCce-EEEe-CCCceEEEEcccc------------------
Q psy17863 146 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKH-IMSA-CGNNVKLWTAEED------------------ 205 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~i~~~~~~~~------------------ 205 (341)
....+. .+...+.+++++|+++. ++++ .++.+++||+...
T Consensus 178 ------------------~~~~~~--~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 237 (408)
T 4a11_B 178 ------------------CSHILQ--GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAV 237 (408)
T ss_dssp ------------------CCEEEC--CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCT
T ss_pred ------------------eeeeec--CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceee
Confidence 111111 24456899999999984 5454 4689999998653
Q ss_pred -----cCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccc----eeEEEEEeCCCCCEEEEecCCCcE
Q psy17863 206 -----YGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSG----DFRIECCLDSKDSQIFCGSSDGKI 276 (341)
Q Consensus 206 -----~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~i 276 (341)
.+...|.+++|+|++++|++++.|+.|++||+.+++....+..+... ..... .....+..+++++.++.|
T Consensus 238 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i 316 (408)
T 4a11_B 238 ESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT-VSCGCSSEFVFVPYGSTI 316 (408)
T ss_dssp TTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCE-ECCSSSSCEEEEEETTEE
T ss_pred ccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeE-EecCCCceEEEEecCCEE
Confidence 36788999999999999999999999999999988776554432211 11111 223344567777889999
Q ss_pred EEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCc
Q psy17863 277 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 277 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~ 331 (341)
++||+.+++++..+. +|...|++++|+|++++|++++ ||.|++|+++......
T Consensus 317 ~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 317 AVYTVYSGEQITMLK--GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp EEEETTTCCEEEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred EEEECcCCcceeeec--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 999999999999998 8999999999999999999999 9999999998875443
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=288.51 Aligned_cols=287 Identities=17% Similarity=0.252 Sum_probs=222.9
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc-----------eeeEecCcc------------cceeEEEEecCC-
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL-----------LLKTYGGHA------------HEVNDATAACDS- 67 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~- 67 (341)
|.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 67899999999999999999999999999998776 577888998 889999999998
Q ss_pred -CEEEEecCCCcEEEEECCCCcee---------------------------------------ee-ecccCccEEEEEEc
Q psy17863 68 -SQIASGASDKSVILWEVTTGQPV---------------------------------------RR-WREHASKVTCVKFN 106 (341)
Q Consensus 68 -~~l~~~~~dg~i~iw~~~~~~~~---------------------------------------~~-~~~~~~~v~~~~~~ 106 (341)
.+|++++.|+.|++||+.+++.. .. ..+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 79999999999999998764431 12 35799999999999
Q ss_pred CCCcEEEEecCCCeEEEEEecCC----------------CCcCeEEeecCCC--ceEEEeeccCeEEEEEccCCcc----
Q psy17863 107 EDSSVVISGSQDNTVMMWDVKSR----------------SHHPIQCCLDSKD--SQIFCGSSDGKIYKWQLVDSSQ---- 164 (341)
Q Consensus 107 ~~~~~l~~~~~d~~i~iwd~~~~----------------~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~---- 164 (341)
|++++|+++ .|+.|++||++.. ....+..+.+.++ ..+++++.||.|++||+++.+.
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 999999998 7999999998831 1223555555554 6899999999999999988765
Q ss_pred eeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccc-ccee
Q psy17863 165 ISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKAT-GELL 243 (341)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~ 243 (341)
...+..+.... .. .....+...|.+++|+|++++|++++. +.|++||+++ ++++
T Consensus 266 ~~~~~~~~~~~----------~~--------------~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~ 320 (447)
T 3dw8_B 266 SKLFEEPEDPS----------NR--------------SFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV 320 (447)
T ss_dssp CEEECCC---------------C--------------CHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS
T ss_pred eeEeccCCCcc----------cc--------------ccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc
Confidence 23332111000 00 000012347999999999999999998 9999999997 8888
Q ss_pred eeecCccccee-------------EEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEe------------------
Q psy17863 244 EEYKGHKSGDF-------------RIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH------------------ 292 (341)
Q Consensus 244 ~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~------------------ 292 (341)
..+.+|..... ...++|+|++++|++|+.||.|++||+.+++.+.....
T Consensus 321 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (447)
T 3dw8_B 321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCAS 400 (447)
T ss_dssp CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECS
T ss_pred ceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCcccccc
Confidence 89988864322 11248999999999999999999999988876532110
Q ss_pred ------------eeeccceEEEEEcCCCcEEEEeCCCcEEEEEc
Q psy17863 293 ------------SVGKAVVNSLCSHPTRKHIMSACGNNVKLWTA 324 (341)
Q Consensus 293 ------------~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~ 324 (341)
......|..++|+|++.+||+++.+.+++|.-
T Consensus 401 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 401 GKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQD 444 (447)
T ss_dssp SCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEEC
T ss_pred CCcccccccccccccCCceeEEEECCCCCEEEEEecceeeeecc
Confidence 02235688999999999999999556888874
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=286.95 Aligned_cols=268 Identities=24% Similarity=0.376 Sum_probs=222.8
Q ss_pred eeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCce
Q psy17863 10 DCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP 89 (341)
Q Consensus 10 ~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 89 (341)
.+|...|.+++| ++++|++|+.||.|++||..+++....+.+|...|.+++| ++++|++|+.||.|++||+.+++.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence 456678999887 7899999999999999999999999999999999999998 788999999999999999999999
Q ss_pred eeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCc-----------CeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 90 VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH-----------PIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 90 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
+..+..|...|.+++|++ ..+++++.||.|++||++++... .+..+.. .+..+++++.||.|++||
T Consensus 206 ~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~vwd 282 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWN 282 (435)
T ss_dssp EEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-CCCEEEEEeCCCeEEEEE
Confidence 999999999999999974 58999999999999999876532 2222222 456777788888888888
Q ss_pred ccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEecc
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 238 (341)
+++.+.+..+.. +...+.++.+ +++++++|+.||.|++||++
T Consensus 283 ~~~~~~~~~~~~------------------------------------~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~ 324 (435)
T 1p22_A 283 TSTCEFVRTLNG------------------------------------HKRGIACLQY--RDRLVVSGSSDNTIRLWDIE 324 (435)
T ss_dssp TTTCCEEEEEEC------------------------------------CSSCEEEEEE--ETTEEEEEETTSCEEEEETT
T ss_pred CCcCcEEEEEcC------------------------------------CCCcEEEEEe--CCCEEEEEeCCCeEEEEECC
Confidence 777655544432 3456777777 46789999999999999999
Q ss_pred ccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCC---------ceEEEEeeeeccceEEEEEcCCCc
Q psy17863 239 TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS---------QISTLIHSVGKAVVNSLCSHPTRK 309 (341)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~ 309 (341)
+++.+..+.+|...+.++ ++ ++++|++|+.||.|++||+.+++ ++..+. .|...|.+++| ++.
T Consensus 325 ~~~~~~~~~~h~~~v~~~--~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~--~~~ 396 (435)
T 1p22_A 325 CGACLRVLEGHEELVRCI--RF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV--EHSGRVFRLQF--DEF 396 (435)
T ss_dssp TCCEEEEECCCSSCEEEE--EC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC--CCSSCCCCEEE--CSS
T ss_pred CCCEEEEEeCCcCcEEEE--Ee--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc--CCCCCeEEEEe--CCC
Confidence 999999999999998877 55 68899999999999999998766 667776 89999999999 788
Q ss_pred EEEEeC-CCcEEEEEcccccCC
Q psy17863 310 HIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 310 ~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
+|++++ ||.|++|++.+....
T Consensus 397 ~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 397 QIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp CEEECCSSSEEEEEC-------
T ss_pred EEEEEeCCCEEEEEECCCCCCc
Confidence 899999 999999999876543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-42 Score=284.79 Aligned_cols=262 Identities=17% Similarity=0.283 Sum_probs=219.4
Q ss_pred CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEE
Q psy17863 34 DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI 113 (341)
Q Consensus 34 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 113 (341)
+..+..|+..+.....++.+|.+.|++++|+|++++|++|+.||+|++||+.+++....++.|...|.+++|+|++++|+
T Consensus 45 ~~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~la 124 (380)
T 3iz6_a 45 GRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVA 124 (380)
T ss_dssp GGGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEE
T ss_pred cccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEE
Confidence 34556788888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCeEEEEEecCCC---------------CcCeEEeecCC--CceEEEeeccCeEEEEEccCCcceeeeEeeecCce
Q psy17863 114 SGSQDNTVMMWDVKSRS---------------HHPIQCCLDSK--DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV 176 (341)
Q Consensus 114 ~~~~d~~i~iwd~~~~~---------------~~~~~~~~~~~--~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 176 (341)
+++.|+.+++||+.... ...+..+.+.+ +..+++++.|++|++||+.+++.+..+....
T Consensus 125 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~---- 200 (380)
T 3iz6_a 125 CGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF---- 200 (380)
T ss_dssp ECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS----
T ss_pred EeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc----
Confidence 99999999999986532 11222333333 3479999999999999999877654432110
Q ss_pred EEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEcc-CCCEEEEeecCCeEEEEecc-ccceeeeecCccccee
Q psy17863 177 VNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTR-DCQCILTCSTDECLRLFDKA-TGELLEEYKGHKSGDF 254 (341)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~ 254 (341)
...|...+.++++++ +++++++|+.|+.|++||++ .++.+..+.+|...|.
T Consensus 201 ---------------------------~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~ 253 (380)
T 3iz6_a 201 ---------------------------PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDIN 253 (380)
T ss_dssp ---------------------------SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCC
T ss_pred ---------------------------CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeE
Confidence 012466788888876 78999999999999999997 4577889999999999
Q ss_pred EEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeee-----eccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 255 RIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV-----GKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
.+ +|+|++++|++|+.||+|++||+++++.+..+.... +...|++++|+|+|++|++++ ||.|++||+..+.
T Consensus 254 ~v--~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 254 SV--KFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp EE--EECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC
T ss_pred EE--EEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc
Confidence 88 899999999999999999999999998887775211 123589999999999999999 9999999986554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-40 Score=301.20 Aligned_cols=312 Identities=17% Similarity=0.219 Sum_probs=256.1
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
.+.++++.+|.++|++++|+|++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++|
T Consensus 45 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 124 (814)
T 3mkq_A 45 QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124 (814)
T ss_dssp TEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred CceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEE
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC-ceeeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCC---------cCeEEeec-C--CCceEEEe
Q psy17863 83 EVTTG-QPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSH---------HPIQCCLD-S--KDSQIFCG 148 (341)
Q Consensus 83 ~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~---------~~~~~~~~-~--~~~~~~~~ 148 (341)
|++++ .....+.+|...|.+++|+| +++.+++++.||.|++||+.++.. ..+..+.+ + .+..++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp EGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEE
T ss_pred ECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEE
Confidence 99987 66778888999999999999 889999999999999999876432 23333333 3 56799999
Q ss_pred eccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccCC
Q psy17863 149 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDC 220 (341)
Q Consensus 149 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~~ 220 (341)
+.+|.|++||+.+++....+.. +...+.+++|+|++..+++++ ++.+++|+..... +...+.+++|+|++
T Consensus 205 ~~dg~i~~~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 282 (814)
T 3mkq_A 205 SDDLTIKIWDYQTKSCVATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282 (814)
T ss_dssp CTTSEEEEEETTTTEEEEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTC
T ss_pred eCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCC
Confidence 9999999999998887766654 455699999999999888877 5899999988643 66799999999998
Q ss_pred CE-EEEeecCCeEEEEeccccceeeee-------------------------------------------cCcccceeEE
Q psy17863 221 QC-ILTCSTDECLRLFDKATGELLEEY-------------------------------------------KGHKSGDFRI 256 (341)
Q Consensus 221 ~~-l~~~~~d~~i~i~d~~~~~~~~~~-------------------------------------------~~~~~~~~~~ 256 (341)
.. +++.+.++.+.+|++........+ ..+...+..+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (814)
T 3mkq_A 283 RKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSL 362 (814)
T ss_dssp GGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEE
T ss_pred CceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCcee
Confidence 73 244455677888886543221111 1223334555
Q ss_pred EEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 257 ECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 257 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
+++|+|+++++++ +|.+.+|++..... .+.+.+.+++|+|+++++++++ ++.|++|+.-.
T Consensus 363 --~~spdg~~la~~~-~~~~~i~~~~~~~~-------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~ 423 (814)
T 3mkq_A 363 --AHSPNGRFVTVVG-DGEYVIYTALAWRN-------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFK 423 (814)
T ss_dssp --EECTTSSEEEEEE-TTEEEEEETTTTEE-------EEEEECSEEEECTTSSCEEEECTTCCEEEEETTE
T ss_pred --EECCCCCEEEEec-CCEEEEEECccccc-------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCC
Confidence 8999999999998 89999999753321 2345688999999999999998 99999997543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=273.05 Aligned_cols=252 Identities=13% Similarity=0.198 Sum_probs=216.6
Q ss_pred ceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEE
Q psy17863 46 LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125 (341)
Q Consensus 46 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 125 (341)
+...++.+|...|++++|+|++++|++|+.||+|++||..+++....+..|...|.+++|+|++.++++++.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 45678899999999999999999999999999999999999999888988999999999999999999999999999999
Q ss_pred ecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccc
Q psy17863 126 VKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 204 (341)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~ 204 (341)
+....... .......+ ..+...+.+++|+|++..+++++ ++.+++||++.
T Consensus 135 ~~~~~~~~---------------------------~~~~~~~~--~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~ 185 (354)
T 2pbi_B 135 LTFDKNEN---------------------------MAAKKKSV--AMHTNYLSACSFTNSDMQILTASGDGTCALWDVES 185 (354)
T ss_dssp CCCCTTCC---------------------------SGGGCEEE--EECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred Eecccccc---------------------------ccccceee--eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC
Confidence 87543110 00111111 23556799999999998877765 68999999876
Q ss_pred cc-------CCCCeEEEEEcc--CCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCc
Q psy17863 205 DY-------GQEPIVDACFTR--DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGK 275 (341)
Q Consensus 205 ~~-------~~~~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 275 (341)
.. |...+.+++++| ++++|++|+.|+.|++||+++++++..+.+|...+..+ +|+|++++|++|+.|++
T Consensus 186 ~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v--~~~p~~~~l~s~s~D~~ 263 (354)
T 2pbi_B 186 GQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSV--RYYPSGDAFASGSDDAT 263 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE--EECTTSSEEEEEETTSC
T ss_pred CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEE--EEeCCCCEEEEEeCCCe
Confidence 54 778899999987 57899999999999999999999999999999999888 89999999999999999
Q ss_pred EEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 276 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
|++||++.++.+..+....+...+.+++|+|++++|++++ |+.|++||+.++.
T Consensus 264 v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 264 CRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317 (354)
T ss_dssp EEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred EEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence 9999999887776665323445789999999999999999 9999999997654
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-40 Score=272.68 Aligned_cols=248 Identities=20% Similarity=0.322 Sum_probs=203.5
Q ss_pred EeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCc--ceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC
Q psy17863 9 IDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN--LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 9 l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 86 (341)
..+|.+.|++++|+|++++|++|+.|++|++|+..++ +.+..+.+|...|.+++|+|++++|++++.|++|++||+.+
T Consensus 57 ~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136 (345)
T ss_dssp CSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred ccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence 3689999999999999999999999999999998765 45778899999999999999999999999999999999987
Q ss_pred Cc---eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCc
Q psy17863 87 GQ---PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSS 163 (341)
Q Consensus 87 ~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~ 163 (341)
+. .+..+..|...|.+++|+|++++|++++.|+.|++||++....
T Consensus 137 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~-------------------------------- 184 (345)
T 3fm0_A 137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW-------------------------------- 184 (345)
T ss_dssp TSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE--------------------------------
T ss_pred CCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE--------------------------------
Confidence 64 4567788999999999999999999999999999999875320
Q ss_pred ceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccc-----------------------cCCCCeEEEEEccC
Q psy17863 164 QISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED-----------------------YGQEPIVDACFTRD 219 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~-----------------------~~~~~i~~~~~~~~ 219 (341)
........+...|.+++|+|+++++++++ ++.+++|+.... .|...|.+++|+|+
T Consensus 185 -~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~ 263 (345)
T 3fm0_A 185 -VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL 263 (345)
T ss_dssp -EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT
T ss_pred -EEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecC
Confidence 00111122456799999999999998876 589999996321 26678999999999
Q ss_pred CCEEEEeecCCeEEEEeccccce---------eeeecCcccceeEEEEEeCCCC-CEEEEecCCCcEEEEeeeCCCceEE
Q psy17863 220 CQCILTCSTDECLRLFDKATGEL---------LEEYKGHKSGDFRIECCLDSKD-SQIFCGSSDGKIYKWQLVDSSQIST 289 (341)
Q Consensus 220 ~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~ 289 (341)
+..|++++.|+.|++|+...+.. .....+|...|.++ +|+|++ .+|++|+.||+|++|++.+++.+..
T Consensus 264 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v--~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 264 TGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV--AWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp TCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEE--EECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred CCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEe--EEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence 99999999999999999865421 12345889999888 899987 4999999999999999988876655
Q ss_pred EE
Q psy17863 290 LI 291 (341)
Q Consensus 290 ~~ 291 (341)
.+
T Consensus 342 ~~ 343 (345)
T 3fm0_A 342 HH 343 (345)
T ss_dssp --
T ss_pred cc
Confidence 43
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-41 Score=277.14 Aligned_cols=241 Identities=16% Similarity=0.279 Sum_probs=189.6
Q ss_pred eEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceee----EecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 7 QTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLK----TYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 7 ~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
....+|...|++++|+|+++ +++++.||+|+|||+.+++... ...+|...|++++|+|++++|++++.|+.|++|
T Consensus 88 ~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166 (357)
T ss_dssp SEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred cccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34567999999999999986 5567889999999998876543 334799999999999999999999999999999
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCc-EEEEecCCCeEEEEEecCCCC----------cCeEEeecCC--CceEEEee
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSS-VVISGSQDNTVMMWDVKSRSH----------HPIQCCLDSK--DSQIFCGS 149 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~----------~~~~~~~~~~--~~~~~~~~ 149 (341)
|+++++.+..++.|...|.+++|++++. ++++++.|+.|++||+++++. ..+..+.+.+ +..+++|+
T Consensus 167 d~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~ 246 (357)
T 4g56_B 167 DLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD 246 (357)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee
Confidence 9999999999999999999999999764 789999999999999987542 1233333333 34677778
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCC-CEEEEeec
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDC-QCILTCST 228 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~ 228 (341)
.|+.|++||+++.+....+.. +...|.+++|+|++ ++|++++.
T Consensus 247 ~d~~i~~wd~~~~~~~~~~~~------------------------------------~~~~v~~l~~sp~~~~~lasgs~ 290 (357)
T 4g56_B 247 ETGNVSLVNIKNPDSAQTSAV------------------------------------HSQNITGLAYSYHSSPFLASISE 290 (357)
T ss_dssp SSSCEEEEESSCGGGCEEECC------------------------------------CSSCEEEEEECSSSSCCEEEEET
T ss_pred cccceeEEECCCCcEeEEEec------------------------------------cceeEEEEEEcCCCCCEEEEEeC
Confidence 888888888877665554432 35678888888876 57899999
Q ss_pred CCeEEEEeccccceeeeecCcccceeEEEEEeCC-CCCEEEEecCCCcEEEEeeeCCCce
Q psy17863 229 DECLRLFDKATGELLEEYKGHKSGDFRIECCLDS-KDSQIFCGSSDGKIYKWQLVDSSQI 287 (341)
Q Consensus 229 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (341)
|++|++||+++++.+..+ +|...|..+ +|+| ++++|++++.||+|++|++.+....
T Consensus 291 D~~i~iwd~~~~~~~~~~-~H~~~V~~v--afsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 291 DCTVAVLDADFSEVFRDL-SHRDFVTGV--AWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp TSCEEEECTTSCEEEEEC-CCSSCEEEE--EECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred CCEEEEEECCCCcEeEEC-CCCCCEEEE--EEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 999999999998877654 799999888 8998 7899999999999999999765443
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-40 Score=265.95 Aligned_cols=240 Identities=20% Similarity=0.410 Sum_probs=193.1
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
.+++++++|...|++++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 56 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd 135 (319)
T 3frx_A 56 VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135 (319)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeecccCccEEEEEEcCC------CcEEEEecCCCeEEEEEecCCC--------CcCeEEee-cCCCceEEEe
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFNED------SSVVISGSQDNTVMMWDVKSRS--------HHPIQCCL-DSKDSQIFCG 148 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~-~~~~~~~~~~ 148 (341)
++ ++.+..+.+|...|.++.|.|. +..+++++.|+.|++||+++.+ ...+..+. .+.+.+++++
T Consensus 136 ~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~ 214 (319)
T 3frx_A 136 IK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214 (319)
T ss_dssp TT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred CC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEE
Confidence 85 5677888899999999999984 4489999999999999997643 12233332 2334456666
Q ss_pred eccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeec
Q psy17863 149 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCST 228 (341)
Q Consensus 149 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 228 (341)
+.||.|++||+.+.+.+..+. ...++.+++|+|++.++++++.
T Consensus 215 ~~dg~i~iwd~~~~~~~~~~~-------------------------------------~~~~v~~~~~sp~~~~la~~~~ 257 (319)
T 3frx_A 215 GKDGEIMLWNLAAKKAMYTLS-------------------------------------AQDEVFSLAFSPNRYWLAAATA 257 (319)
T ss_dssp ETTCEEEEEETTTTEEEEEEE-------------------------------------CCSCEEEEEECSSSSEEEEEET
T ss_pred eCCCeEEEEECCCCcEEEEec-------------------------------------CCCcEEEEEEcCCCCEEEEEcC
Confidence 666666666666554433332 2456788888888888887765
Q ss_pred CCeEEEEeccccceeeeecC--------cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCC
Q psy17863 229 DECLRLFDKATGELLEEYKG--------HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS 284 (341)
Q Consensus 229 d~~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (341)
+ .+++|++..+..+..+.. |...+..+ +|+|+|++|++|+.||.|++||+.++
T Consensus 258 ~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 258 T-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSL--AWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp T-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEE--EECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred C-CcEEEEeCcCeeeeccCccccccccCcCcceeEE--EECCCCCEEEEeecCceEEEEEEeec
Confidence 4 589999887766655542 33445555 89999999999999999999998765
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=281.36 Aligned_cols=289 Identities=13% Similarity=0.199 Sum_probs=233.5
Q ss_pred CeEEEEcCCCcceeeEecCcccceeEEEEecCCC-EEEEecCCCcEEEEEC----CCCc------eeeeecc--------
Q psy17863 35 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS-QIASGASDKSVILWEV----TTGQ------PVRRWRE-------- 95 (341)
Q Consensus 35 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~----~~~~------~~~~~~~-------- 95 (341)
..+.+|+............|...|++++|+|+++ +|++++.||.|++|++ .+++ ....+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS 104 (425)
T ss_dssp ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence 4466788766555545555779999999999999 9999999999999999 8887 4444443
Q ss_pred --cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCC-------CCcCeEEeec-CCCceEEEeeccCeEEEEEccCCcce
Q psy17863 96 --HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR-------SHHPIQCCLD-SKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 96 --~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~-~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
|...|++++|+|++++|++++.||.|++||.... ....+..+.+ +.+..+++++.|+.+++||+.+++..
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 6779999999999999999999999999994332 1234444444 45668999999999999999988877
Q ss_pred eeeEeeecCc-------------eEEEEEECCCCceEEEeCCCceEEEEccccc-------CCCCeEEEEEccCCCEEEE
Q psy17863 166 STLIHSVGKA-------------VVNSLCSHPTRKHIMSACGNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILT 225 (341)
Q Consensus 166 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~ 225 (341)
..+....... .+.+++++|++.+++.+.++.+++|++.... +..++.+++|+|++++|++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE
Confidence 6664432221 1788899999887777778999999988643 6789999999999999999
Q ss_pred eecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEc
Q psy17863 226 CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH 305 (341)
Q Consensus 226 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 305 (341)
++.|+.|++||+++++.+..+.+|...+..+ +++|++ ++++++.||.|++||+.+++.+..+. .|...|.+++|+
T Consensus 265 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~--~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~i~~~~~s 339 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSA--SWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI--VDGVPIFAGRIS 339 (425)
T ss_dssp EETTSCEEEECSSSBSCSEEECCCSSCEEEE--EEETTT-EEEEEETTSEEEEEETTTTEEEEEEE--CTTCCEEEEEEC
T ss_pred EcCCCEEEEEECCCCccceEecCCCccEEEE--EECCCC-EEEEEeCCCcEEEEECCCCcEeEecc--cCCccEEEEEEc
Confidence 9999999999999999999999999998888 888998 99999999999999999999888888 788999999999
Q ss_pred CCCcEEEEeC-CCcEEEEEccccc
Q psy17863 306 PTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 306 ~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
|++++|++++ ||.|++|++.+..
T Consensus 340 ~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 340 QDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp TTSSEEEEEETTSCEEEEECHHHH
T ss_pred CCCCEEEEEECCCeEEEEECCCCc
Confidence 9999999999 9999999998765
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=264.41 Aligned_cols=245 Identities=23% Similarity=0.368 Sum_probs=208.4
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
.+..+.+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 55 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iw 134 (312)
T 4ery_A 55 GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134 (312)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred cccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC---------cCeEE-eecCCCceEEEeeccC
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH---------HPIQC-CLDSKDSQIFCGSSDG 152 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---------~~~~~-~~~~~~~~~~~~~~~g 152 (341)
|+++++.+..+..|..+|.+++|+|++++|++++.||.|++||+++++. .++.. ...+.+..+++++.|+
T Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 214 (312)
T 4ery_A 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214 (312)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTT
T ss_pred ECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCC
Confidence 9999999999999999999999999999999999999999999987541 22333 3345556788888899
Q ss_pred eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeE
Q psy17863 153 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232 (341)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 232 (341)
.|++||+++.+....+..+... ...+......+++.++++|+.||.|
T Consensus 215 ~i~iwd~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~l~sg~~dg~i 261 (312)
T 4ery_A 215 TLKLWDYSKGKCLKTYTGHKNE---------------------------------KYCIFANFSVTGGKWIVSGSEDNLV 261 (312)
T ss_dssp EEEEEETTTTEEEEEECSSCCS---------------------------------SSCCCEEEECSSSCEEEECCTTSCE
T ss_pred eEEEEECCCCcEEEEEEecCCc---------------------------------eEEEEEEEEeCCCcEEEEECCCCEE
Confidence 9999998877655444322111 1112222334678899999999999
Q ss_pred EEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEec--CCCcEEEEeee
Q psy17863 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGS--SDGKIYKWQLV 282 (341)
Q Consensus 233 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~ 282 (341)
++||+.+++.+..+.+|...+..+ +++|+++++++++ .|+.|++|+..
T Consensus 262 ~vwd~~~~~~~~~~~~h~~~v~~~--~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 262 YIWNLQTKEIVQKLQGHTDVVIST--ACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEE--EECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEECCCchhhhhhhccCCcEEEE--eecCcCCceEEEEccCCccEEEecCC
Confidence 999999999999999999988877 8999999999986 69999999853
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=264.84 Aligned_cols=244 Identities=21% Similarity=0.317 Sum_probs=191.5
Q ss_pred eeeeEE-ee-eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC-------cceeeEecCcccceeEEEEecCCCEEEEec
Q psy17863 4 TCVQTI-DC-KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR-------NLLLKTYGGHAHEVNDATAACDSSQIASGA 74 (341)
Q Consensus 4 ~~~~~l-~~-h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 74 (341)
+++..+ .+ |.+.|++++|+|++++|++|+.|++|++||... .+.+..+.+|...|.+++|+|++++|++++
T Consensus 47 ~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s 126 (330)
T 2hes_X 47 TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS 126 (330)
T ss_dssp EEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEE
T ss_pred EEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence 445556 44 999999999999999999999999999999843 356677889999999999999999999999
Q ss_pred CCCcEEEEECCCC----ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeec
Q psy17863 75 SDKSVILWEVTTG----QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSS 150 (341)
Q Consensus 75 ~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (341)
.|++|++||+... +++..+.+|...|.+++|+|++++|++++.|+.|++||......
T Consensus 127 ~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~------------------- 187 (330)
T 2hes_X 127 RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW------------------- 187 (330)
T ss_dssp TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-------------------
T ss_pred CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe-------------------
Confidence 9999999999432 45677889999999999999999999999999999999765310
Q ss_pred cCeEEEEEccCCcceeeeEeeecCceEEEEEECCC--CceEEEeC-CCceEEEEcccc----------------cCCCCe
Q psy17863 151 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT--RKHIMSAC-GNNVKLWTAEED----------------YGQEPI 211 (341)
Q Consensus 151 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~i~~~~~~~~----------------~~~~~i 211 (341)
+.+..+ ..+...|.+++|+|+ +..+++++ ++.+++|++... .|...|
T Consensus 188 ------------~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v 253 (330)
T 2hes_X 188 ------------ECVAVL--NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQV 253 (330)
T ss_dssp ------------EEEEEE--CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCE
T ss_pred ------------eEEEEc--cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccce
Confidence 011111 224567999999998 56676655 689999998653 267889
Q ss_pred EEEEEccCCCEEEEeecCCeEEEEeccccc--eee-eecCccc-ceeEEEEEeCC--CCCEEEEecCCCcEEEEeeeC
Q psy17863 212 VDACFTRDCQCILTCSTDECLRLFDKATGE--LLE-EYKGHKS-GDFRIECCLDS--KDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 212 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~-~~~~~~~-~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~ 283 (341)
.+++|++++ +|++++.||.|++||..+++ ... .+.+|.. .+..+ +|+| ++++|++|+.||.|++|++++
T Consensus 254 ~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v--~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 254 YNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVV--KWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEE--EEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEE--EEecCCCceEEEEecCCCcEEEEEecc
Confidence 999999765 79999999999999988763 332 3356776 77777 7888 788999999999999999864
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-41 Score=282.87 Aligned_cols=271 Identities=12% Similarity=0.156 Sum_probs=225.4
Q ss_pred eeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC----cceeeEecCcccceeEEEEecC-CCEEEEecCCCcEEEEECC
Q psy17863 11 CKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR----NLLLKTYGGHAHEVNDATAACD-SSQIASGASDKSVILWEVT 85 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~ 85 (341)
.|...|++++|+|++++|++++.||.|++||+.+ .+.+..+.+|...|.+++|+|+ +++|++++.||.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 4889999999999999999999999999999987 4578888999999999999998 8999999999999999999
Q ss_pred CCc------eee---eecccCccEEEEEEcCC-CcEEEEecCCCeEEEEEecCCC--------------CcCeEEeecCC
Q psy17863 86 TGQ------PVR---RWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRS--------------HHPIQCCLDSK 141 (341)
Q Consensus 86 ~~~------~~~---~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~--------------~~~~~~~~~~~ 141 (341)
+++ ... .+..|...|.+++|+|+ +.+|++++.|+.|++||+++++ ...+..+.+.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 876 333 33678999999999998 7899999999999999988743 23455555555
Q ss_pred C--ceEEEeeccC---eEEEEEccCCc-ceeeeEeeecCceEEEEEECC-CCceEEEeC-CCceEEEEccccc-------
Q psy17863 142 D--SQIFCGSSDG---KIYKWQLVDSS-QISTLIHSVGKAVVNSLCSHP-TRKHIMSAC-GNNVKLWTAEEDY------- 206 (341)
Q Consensus 142 ~--~~~~~~~~~g---~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~i~~~~~~~~~------- 206 (341)
+ ..+++++.++ .|++||+++.. ....+. ..+...+.+++|+| +++++++++ ++.+++|++....
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~ 303 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA 303 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence 4 4789999998 99999999864 344333 13456799999999 888888876 5899999987643
Q ss_pred CCCCeEEEEEccCC-CEEEEeecCCeEEEEeccccceeeeecC-----------------------------------cc
Q psy17863 207 GQEPIVDACFTRDC-QCILTCSTDECLRLFDKATGELLEEYKG-----------------------------------HK 250 (341)
Q Consensus 207 ~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----------------------------------~~ 250 (341)
|...+.+++|+|++ .++++++.|+.|++||+.+++....... |.
T Consensus 304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (416)
T 2pm9_A 304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYG 383 (416)
T ss_dssp SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTC
T ss_pred CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcccc
Confidence 77889999999999 8999999999999999987654332211 44
Q ss_pred cceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCC
Q psy17863 251 SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS 284 (341)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (341)
.++..+ +|+|+|++|++++.||.|+||++.+.
T Consensus 384 ~~~~~~--~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 384 EPSPAA--HWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCSCCC--EEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CCccce--EEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 455455 89999999999999999999998764
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=270.55 Aligned_cols=245 Identities=22% Similarity=0.359 Sum_probs=198.9
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeec
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 94 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 94 (341)
.|++++|+|+|++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++....+.
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 204 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 204 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999998887776
Q ss_pred ccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCC---------------CcCeEEee-cCCCceEEEeeccCeEEEE
Q psy17863 95 EHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRS---------------HHPIQCCL-DSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 95 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~---------------~~~~~~~~-~~~~~~~~~~~~~g~i~~~ 157 (341)
+...+.+++|+| ++++|++++.|+.|++||++++. ...+..+. .+.+..+++++.|+.|++|
T Consensus 205 -~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~w 283 (393)
T 1erj_A 205 -IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283 (393)
T ss_dssp -CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred -cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 567899999999 89999999999999999987643 12334444 4456689999999999999
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEec
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDK 237 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 237 (341)
|+++............ +... . .-..|...|.+++|+|++.+|++++.|+.|++||.
T Consensus 284 d~~~~~~~~~~~~~~~------------~~~~--------~----~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~ 339 (393)
T 1erj_A 284 NLQNANNKSDSKTPNS------------GTCE--------V----TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 339 (393)
T ss_dssp EC---------------------------CEE--------E----EEECCSSCEEEEEECGGGCEEEEEETTSEEEEEET
T ss_pred ECCCCCCcccccCCCC------------Ccce--------E----EEecccCcEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 9987543222111000 0000 0 00125678999999999999999999999999999
Q ss_pred cccceeeeecCcccceeEEEEE----eCCCCCEEEEecCCCcEEEEeeeCC
Q psy17863 238 ATGELLEEYKGHKSGDFRIECC----LDSKDSQIFCGSSDGKIYKWQLVDS 284 (341)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (341)
.+++.+..+.+|...+..+.+. ++|++++|++|+.||+|++|++...
T Consensus 340 ~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 340 KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9999999999999999888432 2357889999999999999998654
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-39 Score=271.92 Aligned_cols=270 Identities=15% Similarity=0.183 Sum_probs=224.2
Q ss_pred EeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCc
Q psy17863 9 IDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 88 (341)
Q Consensus 9 l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 88 (341)
+..| ..+....|+|++++|++|+.||.|++||+.+++....+.+|...|++++|+|++++|++++.|+.|++||+.+++
T Consensus 94 ~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 172 (420)
T 3vl1_A 94 LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS 172 (420)
T ss_dssp SCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred EecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 3344 445566789999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcC-----------eEE---------------------
Q psy17863 89 PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP-----------IQC--------------------- 136 (341)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-----------~~~--------------------- 136 (341)
.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++... +..
T Consensus 173 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~ 252 (420)
T 3vl1_A 173 NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 252 (420)
T ss_dssp CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCT
T ss_pred CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccc
Confidence 999999999999999999999999999999999999998754111 111
Q ss_pred -eecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCc-eEEEeC-CCceEEEEccccc-------
Q psy17863 137 -CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK-HIMSAC-GNNVKLWTAEEDY------- 206 (341)
Q Consensus 137 -~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~i~~~~~~~~~------- 206 (341)
...+.+..+++++.||.|++||+++.+....+.. .+...+.+++|+|++. ++++++ ++.+++||+....
T Consensus 253 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 331 (420)
T 3vl1_A 253 LEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFL 331 (420)
T ss_dssp TCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE
T ss_pred eEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhh
Confidence 1124556899999999999999998877666543 2456799999999998 777766 5899999997643
Q ss_pred --CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccc---------eeeeecCcccceeEEEEEeCCCCC---EEEEecC
Q psy17863 207 --GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGE---------LLEEYKGHKSGDFRIECCLDSKDS---QIFCGSS 272 (341)
Q Consensus 207 --~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~ 272 (341)
+...+.++ +.+++++|++++.|+.|++|++.... ....+..|...+..+ +|+|+++ .+++.+.
T Consensus 332 ~~~~~~v~~~-~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~~g~l~a~g~ 408 (420)
T 3vl1_A 332 INEGTPINNV-YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQF--CYVSDDESNGEVLEVGK 408 (420)
T ss_dssp ESTTSCEEEE-EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEE--EEECCSSSSCEEEEEET
T ss_pred ccCCCCceEE-EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEE--EEccCCCCcceEEEEcC
Confidence 45667777 45578899999999999999987632 223455677788877 8899998 7888888
Q ss_pred CCcEEEEeeeC
Q psy17863 273 DGKIYKWQLVD 283 (341)
Q Consensus 273 dg~i~iwd~~~ 283 (341)
+|.+.+|++++
T Consensus 409 ~g~~~~~~~~~ 419 (420)
T 3vl1_A 409 NNFCALYNLSN 419 (420)
T ss_dssp TTEEEEEESCC
T ss_pred CceEEEEeccC
Confidence 99999999865
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=260.87 Aligned_cols=242 Identities=19% Similarity=0.340 Sum_probs=201.7
Q ss_pred ceeeEecCcccceeEEEE-----ec-CCCEEEEecCCCcEEEEECCCC-------ceeeeecccCccEEEEEEcCCCcEE
Q psy17863 46 LLLKTYGGHAHEVNDATA-----AC-DSSQIASGASDKSVILWEVTTG-------QPVRRWREHASKVTCVKFNEDSSVV 112 (341)
Q Consensus 46 ~~~~~~~~~~~~v~~~~~-----~~-~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l 112 (341)
++...+++|...|++++| ++ ++++|++|+.|++|++||+.++ .+...+.+|...|.+++|+|++.++
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 456678999999999999 76 8999999999999999998753 3456788999999999999999999
Q ss_pred EEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEe
Q psy17863 113 ISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 192 (341)
Q Consensus 113 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (341)
++++.|++|++||+++++ ....+. .+...|.+++|+|+++.++++
T Consensus 92 ~s~s~D~~v~lwd~~~~~---------------------------------~~~~~~--~h~~~v~~v~~sp~~~~l~s~ 136 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGT---------------------------------TYKRFV--GHQSEVYSVAFSPDNRQILSA 136 (343)
T ss_dssp EEEETTSEEEEEETTSSC---------------------------------EEEEEE--CCCSCEEEEEECSSTTEEEEE
T ss_pred EEEcCCCcEEEEECCCCc---------------------------------EEEEEc--CCCCcEEEEEECCCCCEEEEE
Confidence 999999999999987643 111121 244568999999999888877
Q ss_pred C-CCceEEEEcccc---------cCCCCeEEEEEccCC----------CEEEEeecCCeEEEEeccccceeeeecCcccc
Q psy17863 193 C-GNNVKLWTAEED---------YGQEPIVDACFTRDC----------QCILTCSTDECLRLFDKATGELLEEYKGHKSG 252 (341)
Q Consensus 193 ~-~~~i~~~~~~~~---------~~~~~i~~~~~~~~~----------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 252 (341)
+ ++.+++||+... .+...+.+++|+|++ .++++++.|+.|++||. ..+....+.+|...
T Consensus 137 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~ 215 (343)
T 2xzm_R 137 GAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESN 215 (343)
T ss_dssp ETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSC
T ss_pred cCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcccc
Confidence 6 589999998532 367789999999987 78999999999999994 46677788999999
Q ss_pred eeEEEEEeCCCCCEEEEecCCCcEEEEeeeCC-CceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEccccc
Q psy17863 253 DFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS-SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 328 (341)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~~ 328 (341)
+..+ +|+|++++|++|+.||.|++||+.+. .....+ .+...|.+++|+|++++++++.|+.|++|++.+..
T Consensus 216 v~~~--~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~---~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 216 VNHL--SISPNGKYIATGGKDKKLLIWDILNLTYPQREF---DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQS 287 (343)
T ss_dssp EEEE--EECTTSSEEEEEETTCEEEEEESSCCSSCSEEE---ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCC
T ss_pred ceEE--EECCCCCEEEEEcCCCeEEEEECCCCcccceee---cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCC
Confidence 9888 89999999999999999999999544 344444 35567999999999998887779999999997654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-40 Score=296.06 Aligned_cols=267 Identities=19% Similarity=0.221 Sum_probs=210.7
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCC--CcceeeEecCcccceeEEEEecC--CCEEEEecCCCcEEE
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPY--RNLLLKTYGGHAHEVNDATAACD--SSQIASGASDKSVIL 81 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i 81 (341)
+..+.+|.++|++++|+|++++|++|+.||.|++||+. +++....+.+|.+.|++++|+|+ +++|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 46789999999999999999999999999999999987 56778889999999999999988 999999999999999
Q ss_pred EECCCCc--eeeeecccCccEEEEEEcCC--CcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 82 WEVTTGQ--PVRRWREHASKVTCVKFNED--SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 82 w~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
||+.+++ .+..+..|...|.+++|+|+ ++.+++++.||.|++||++.......
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~----------------------- 138 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP----------------------- 138 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC-----------------------
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce-----------------------
Confidence 9999886 67778889999999999998 99999999999999999886531111
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEec
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDK 237 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 237 (341)
.....+...+.+++++|..... .......+++.++++|+.||.|++||+
T Consensus 139 ----------~~~~~~~~~v~~l~~~p~~~~~---------------------~~~~~~~~d~~~l~sgs~dg~I~iwd~ 187 (753)
T 3jro_A 139 ----------IIIDAHAIGVNSASWAPATIEE---------------------DGEHNGTKESRKFVTGGADNLVKIWKY 187 (753)
T ss_dssp ----------EEEECCSSCEEEEEECCCC------------------------------CGGGCCEEEEETTSCEEEEEE
T ss_pred ----------eEeecCCCceEEEEecCccccc---------------------ccccccCCCCCEEEEEECCCeEEEEec
Confidence 1111123334445444432100 000111336889999999999999999
Q ss_pred ccc----ceeeeecCcccceeEEEEEeCCC---CCEEEEecCCCcEEEEeeeCCCceE---EEEeeeeccceEEEEEcCC
Q psy17863 238 ATG----ELLEEYKGHKSGDFRIECCLDSK---DSQIFCGSSDGKIYKWQLVDSSQIS---TLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 238 ~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~v~~~~~~~~ 307 (341)
+++ .....+.+|...+.++ +|+|+ ++++++|+.||.|++||+.+++... ......|...|++++|+|+
T Consensus 188 ~~~~~~~~~~~~~~~h~~~V~~l--~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd 265 (753)
T 3jro_A 188 NSDAQTYVLESTLEGHSDWVRDV--AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS 265 (753)
T ss_dssp ETTTTEEEEEEEECCCSSCEEEE--EECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTT
T ss_pred cCCcccceeeeeecCCCCcEEEE--EeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCC
Confidence 876 5567788999999888 89999 8999999999999999998874221 1112257889999999999
Q ss_pred CcEEEEeC-CCcEEEEEccccc
Q psy17863 308 RKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 308 ~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
+++|++++ ||.|++|++..+.
T Consensus 266 g~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 266 GNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp TCCEEEECSSSCEECCBCCSSS
T ss_pred CCEEEEEcCCCEEEEEecCCCC
Confidence 99999999 9999999998543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-38 Score=259.29 Aligned_cols=297 Identities=12% Similarity=0.128 Sum_probs=211.3
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEE-EEecCCCcEEEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI-ASGASDKSVILW 82 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw 82 (341)
+++.+++.|.+.|++++|+|||++|++|+.++ +++|+..+++....... ..+..+++.++++.+ ++++.|++|++|
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 34556789999999999999999999998775 78999988776655432 358888999988887 567888999999
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCC-CCc-C----eEEeecCCCceEEE--eeccCeE
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR-SHH-P----IQCCLDSKDSQIFC--GSSDGKI 154 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~-~----~~~~~~~~~~~~~~--~~~~g~i 154 (341)
|+.+++.+..+. +...|.+++|+++. ++++ .|+.|++||+.+. +.. . ...+...+ ..++. |+.+|.|
T Consensus 87 d~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~-~~la~~sg~~~g~v 161 (355)
T 3vu4_A 87 DDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIRFGGVCEFSN-GLLVYSNEFNLGQI 161 (355)
T ss_dssp ETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEEEEEEEEEET-TEEEEEESSCTTCE
T ss_pred ECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEeccCCceEEEEc-cEEEEeCCCcCcEE
Confidence 999999998887 67799999999864 3333 4789999999886 311 1 11111222 44444 6899999
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCe-EE
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDEC-LR 233 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~ 233 (341)
++||+.+.+.......... .....|. +. .-..|..+|.+++|+|+|++|++++.|++ |+
T Consensus 162 ~iwd~~~~~~~~~~~~~~~-----~~~~~p~-----------~~----~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~ 221 (355)
T 3vu4_A 162 HITKLQSSGSATTQDQGVQ-----QKAILGK-----------GV----LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIR 221 (355)
T ss_dssp EEEECCC-----------------------C-----------CE----EECCCSSCEEEEEECTTSSEEEEEETTCSEEE
T ss_pred EEEECCCCCcccccccccc-----ccccCcc-----------cE----EEEccCCceEEEEECCCCCEEEEEeCCCCEEE
Confidence 9999987653211110000 0000000 00 01226788999999999999999999998 99
Q ss_pred EEeccccceeeeec-C-cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCce--EEE------------------E
Q psy17863 234 LFDKATGELLEEYK-G-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQI--STL------------------I 291 (341)
Q Consensus 234 i~d~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~------------------~ 291 (341)
+||+++++.+..+. + |...+..+ +|+|++++|++++.|++|++||+..+... ..+ .
T Consensus 222 iwd~~~~~~~~~~~~g~h~~~v~~~--~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (355)
T 3vu4_A 222 VFKTEDGVLVREFRRGLDRADVVDM--KWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFK 299 (355)
T ss_dssp EEETTTCCEEEEEECTTCCSCEEEE--EECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEE
T ss_pred EEECCCCcEEEEEEcCCCCCcEEEE--EECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEE
Confidence 99999999999998 5 89988888 89999999999999999999999765321 110 0
Q ss_pred -eeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 292 -HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 292 -~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
......+...++|++++++|++++ ||.+++|++..+...
T Consensus 300 ~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~ 340 (355)
T 3vu4_A 300 LSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEM 340 (355)
T ss_dssp CCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTT
T ss_pred eccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCC
Confidence 001122346799999999999999 999999999876543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-38 Score=266.74 Aligned_cols=252 Identities=16% Similarity=0.248 Sum_probs=210.8
Q ss_pred eEEeeeCCcEEEEEEccC-CCEEEEEeCCCeEEEEcCCC----------cceeeEecCcccceeEEEEecCCC-EEEEec
Q psy17863 7 QTIDCKQGAIRAVRFNVD-GSYCLTCGSDKKIKLWNPYR----------NLLLKTYGGHAHEVNDATAACDSS-QIASGA 74 (341)
Q Consensus 7 ~~l~~h~~~v~~~~~~~~-~~~l~t~~~dg~i~iw~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 74 (341)
..+..|.+.|++++|+|+ +.+|++++.||.|++|++.+ .+.+..+.+|...|.+++|+|++. +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 456679999999999997 78999999999999999876 577888899999999999999988 999999
Q ss_pred CCCcEEEEECCCCce-------eeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEE
Q psy17863 75 SDKSVILWEVTTGQP-------VRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIF 146 (341)
Q Consensus 75 ~dg~i~iw~~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 146 (341)
.||.|++|++.++.. ...+..|...|.+++|+| ++.+|++++.||.|++||+++...
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~--------------- 266 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT--------------- 266 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---------------
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---------------
Confidence 999999999987432 455678999999999999 788999999999999999886431
Q ss_pred EeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCC-EEEE
Q psy17863 147 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQ-CILT 225 (341)
Q Consensus 147 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~-~l~~ 225 (341)
.+....+. .+...+.+++|+|++. ++++
T Consensus 267 ---------------~~~~~~~~------------------------------------~~~~~v~~i~~~p~~~~~l~t 295 (430)
T 2xyi_A 267 ---------------SKPSHTVD------------------------------------AHTAEVNCLSFNPYSEFILAT 295 (430)
T ss_dssp ---------------SSCSEEEE------------------------------------CCSSCEEEEEECSSCTTEEEE
T ss_pred ---------------CcceeEee------------------------------------cCCCCeEEEEeCCCCCCEEEE
Confidence 01111111 1245678888888876 6889
Q ss_pred eecCCeEEEEeccc-cceeeeecCcccceeEEEEEeCCCCC-EEEEecCCCcEEEEeeeCC--------------CceEE
Q psy17863 226 CSTDECLRLFDKAT-GELLEEYKGHKSGDFRIECCLDSKDS-QIFCGSSDGKIYKWQLVDS--------------SQIST 289 (341)
Q Consensus 226 ~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~--------------~~~~~ 289 (341)
|+.||.|++||+++ ..++..+..|...+..+ +|+|+++ +|++++.||.|++||+... +.+..
T Consensus 296 g~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i--~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 373 (430)
T 2xyi_A 296 GSADKTVALWDLRNLKLKLHSFESHKDEIFQV--QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 373 (430)
T ss_dssp EETTSEEEEEETTCTTSCSEEEECCSSCEEEE--EECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEE
T ss_pred EeCCCeEEEEeCCCCCCCeEEeecCCCCEEEE--EECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEE
Confidence 99999999999987 56788899999999888 8999885 6999999999999999872 34444
Q ss_pred EEeeeeccceEEEEEcCCCc-EEEEeC-CCcEEEEEccccc
Q psy17863 290 LIHSVGKAVVNSLCSHPTRK-HIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 290 ~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~vw~~~~~~ 328 (341)
+. +|...|++++|+|+++ +|++++ |+.|++|++.+..
T Consensus 374 ~~--~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 374 HG--GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp CC--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred cC--CCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 44 7888999999999999 889999 9999999998653
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=262.28 Aligned_cols=246 Identities=18% Similarity=0.285 Sum_probs=202.4
Q ss_pred eCCcEEEEEEccC----CCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEec-CCCEEEEecCCCcEEEEECCC
Q psy17863 12 KQGAIRAVRFNVD----GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC-DSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 12 h~~~v~~~~~~~~----~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~ 86 (341)
|...|++++|+|+ +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 5578999999999 67999999999999999999999999999999999999999 999999999999999999999
Q ss_pred Cceeeee---cccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCC----------------------------------
Q psy17863 87 GQPVRRW---REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR---------------------------------- 129 (341)
Q Consensus 87 ~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---------------------------------- 129 (341)
++.+..+ ..|...|.+++|+|++++|++++.||.|++||++++
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence 9988887 689999999999999999999999999999998864
Q ss_pred --CCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccC
Q psy17863 130 --SHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYG 207 (341)
Q Consensus 130 --~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 207 (341)
....+.++.+. +..+++++.|+.|++||+.+.......... .......+. ....+
T Consensus 228 ~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~---------------------~~~~~ 284 (366)
T 3k26_A 228 DIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKP-SESNVTILG---------------------RFDYS 284 (366)
T ss_dssp SSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCT-TCCCEEEEE---------------------EEECS
T ss_pred cCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCcccccccccc-CCcchheec---------------------ccccc
Confidence 22233334333 679999999999999999876542221110 000000000 01124
Q ss_pred CCCeEEEEEccC--CCEEEEeecCCeEEEEecccccee----eeecCc--ccceeEEEEEeCCCCCEEEEecCCCcEEEE
Q psy17863 208 QEPIVDACFTRD--CQCILTCSTDECLRLFDKATGELL----EEYKGH--KSGDFRIECCLDSKDSQIFCGSSDGKIYKW 279 (341)
Q Consensus 208 ~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 279 (341)
...+.+++|+|+ +++|++++.||.|++||+.+++.. ..+.+| ...+..+ +|+|++++|++++.||.|++|
T Consensus 285 ~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~s~~~dg~i~iw 362 (366)
T 3k26_A 285 QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQT--SFSRDSSILIAVCDDASIWRW 362 (366)
T ss_dssp SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEE--EECTTSSEEEEEETTSEEEEE
T ss_pred CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEE--EeCCCCCeEEEEeCCCEEEEE
Confidence 567889999999 999999999999999999987643 377777 6777777 899999999999999999999
Q ss_pred eee
Q psy17863 280 QLV 282 (341)
Q Consensus 280 d~~ 282 (341)
|+.
T Consensus 363 d~~ 365 (366)
T 3k26_A 363 DRL 365 (366)
T ss_dssp EC-
T ss_pred Eec
Confidence 975
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=268.05 Aligned_cols=253 Identities=15% Similarity=0.251 Sum_probs=209.5
Q ss_pred eeeEEeeeCCcEEEEEEcc-CCCEEEEEeCCCeEEEEcCCCc-------ceeeEecCcccceeEEEEecCC-CEEEEecC
Q psy17863 5 CVQTIDCKQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRN-------LLLKTYGGHAHEVNDATAACDS-SQIASGAS 75 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~ 75 (341)
.+..+.+|.+.|++++|+| ++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++ ++|++++.
T Consensus 73 ~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~ 152 (402)
T 2aq5_A 73 NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC 152 (402)
T ss_dssp TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence 3456789999999999999 9999999999999999999887 6678889999999999999998 69999999
Q ss_pred CCcEEEEECCCCceeeee--cccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCe
Q psy17863 76 DKSVILWEVTTGQPVRRW--REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGK 153 (341)
Q Consensus 76 dg~i~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 153 (341)
||.|++||+++++.+..+ ..|...|.+++|+|++++|++++.||.|++||+++++
T Consensus 153 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----------------------- 209 (402)
T 2aq5_A 153 DNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT----------------------- 209 (402)
T ss_dssp TSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-----------------------
T ss_pred CCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc-----------------------
Confidence 999999999999999998 7899999999999999999999999999999987543
Q ss_pred EEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEe---ecCC
Q psy17863 154 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTC---STDE 230 (341)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~d~ 230 (341)
....+... + ....+.++.|+|+++++++| +.|+
T Consensus 210 ----------~~~~~~~~-~---------------------------------~~~~~~~~~~~~~~~~l~~g~~~~~d~ 245 (402)
T 2aq5_A 210 ----------VVAEKDRP-H---------------------------------EGTRPVHAVFVSEGKILTTGFSRMSER 245 (402)
T ss_dssp ----------EEEEEECS-S---------------------------------CSSSCCEEEECSTTEEEEEEECTTCCE
T ss_pred ----------eeeeeccC-C---------------------------------CCCcceEEEEcCCCcEEEEeccCCCCc
Confidence 11111000 0 02236778899999999998 7899
Q ss_pred eEEEEeccccce-eeeec-CcccceeEEEEEeCCCCCEEE-EecCCCcEEEEeeeCCCc-eEEEEeeeeccceEEEEEcC
Q psy17863 231 CLRLFDKATGEL-LEEYK-GHKSGDFRIECCLDSKDSQIF-CGSSDGKIYKWQLVDSSQ-ISTLIHSVGKAVVNSLCSHP 306 (341)
Q Consensus 231 ~i~i~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~ 306 (341)
.|++||+++++. +.... .|...+..+ +++|++++|+ +|+.||.|++||+.+++. +..+....+..+|.+++|+|
T Consensus 246 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp 323 (402)
T 2aq5_A 246 QVALWDTKHLEEPLSLQELDTSSGVLLP--FFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP 323 (402)
T ss_dssp EEEEEETTBCSSCSEEEECCCCSSCEEE--EEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECC
T ss_pred eEEEEcCccccCCceEEeccCCCceeEE--EEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEec
Confidence 999999988764 33332 456667666 8999999986 566899999999999885 66666334568999999999
Q ss_pred CCcEEEEeCCCcEEEEEcccc
Q psy17863 307 TRKHIMSACGNNVKLWTAEED 327 (341)
Q Consensus 307 ~~~~l~~~~d~~i~vw~~~~~ 327 (341)
++.+++++ ++.+++|++.++
T Consensus 324 ~~~~~~s~-~~~~~~~~l~~~ 343 (402)
T 2aq5_A 324 KRGLEVNK-CEIARFYKLHER 343 (402)
T ss_dssp GGGSCGGG-TEEEEEEEEETT
T ss_pred ccccceec-ceeEEEEEcCCC
Confidence 99987643 779999999864
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=255.83 Aligned_cols=247 Identities=25% Similarity=0.436 Sum_probs=201.7
Q ss_pred CCCcceeeEecCcccceeEEEEecC-CCEEEEecCCCcEEEEECCCCc-----eeeeecccCccEEEEEEcCCCcEEEEe
Q psy17863 42 PYRNLLLKTYGGHAHEVNDATAACD-SSQIASGASDKSVILWEVTTGQ-----PVRRWREHASKVTCVKFNEDSSVVISG 115 (341)
Q Consensus 42 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~ 115 (341)
.++.++..+|++|.+.|++++|+|+ +++|++|+.|++|++||+.+++ +...+.+|...|.+++|+|++++|+++
T Consensus 25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~ 104 (340)
T 4aow_A 25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG 104 (340)
T ss_dssp -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence 3445666789999999999999997 6899999999999999987654 456778999999999999999999999
Q ss_pred cCCCeEEEEEecCCCC---------cCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCC
Q psy17863 116 SQDNTVMMWDVKSRSH---------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR 186 (341)
Q Consensus 116 ~~d~~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (341)
+.|+.|++|+...... ........+.+..+++++.|+.+++||...........
T Consensus 105 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~----------------- 167 (340)
T 4aow_A 105 SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD----------------- 167 (340)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS-----------------
T ss_pred cccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe-----------------
Confidence 9999999999876431 22233344556678888888888888876543221111
Q ss_pred ceEEEeCCCceEEEEcccccCCCCeEEEEEccCC--CEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCC
Q psy17863 187 KHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDC--QCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKD 264 (341)
Q Consensus 187 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (341)
..+...+..++|++++ .++++++.|+.|++||+++++.+..+.+|...+.++ +|+|++
T Consensus 168 ------------------~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~--~~s~~~ 227 (340)
T 4aow_A 168 ------------------ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV--TVSPDG 227 (340)
T ss_dssp ------------------SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE--EECTTS
T ss_pred ------------------ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEE--EECCCC
Confidence 1134567777777653 568899999999999999999999999999999888 899999
Q ss_pred CEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEccccc
Q psy17863 265 SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 328 (341)
Q Consensus 265 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~~ 328 (341)
++|++|+.||.|++||+.+.+++..+. +...|.+++|+|++.+++++.|+.|++|++++..
T Consensus 228 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~ 288 (340)
T 4aow_A 228 SLCASGGKDGQAMLWDLNEGKHLYTLD---GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKI 288 (340)
T ss_dssp SEEEEEETTCEEEEEETTTTEEEEEEE---CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTE
T ss_pred CEEEEEeCCCeEEEEEeccCceeeeec---CCceEEeeecCCCCceeeccCCCEEEEEECCCCe
Confidence 999999999999999999998888776 4578999999999887766669999999998653
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=263.74 Aligned_cols=272 Identities=19% Similarity=0.315 Sum_probs=225.1
Q ss_pred eeeEecCcccce-eEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEE
Q psy17863 47 LLKTYGGHAHEV-NDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125 (341)
Q Consensus 47 ~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 125 (341)
....+.+|...+ .++.+ ++++|++|+.||+|++||+.+++.+..+.+|.+.|.+++|+|++ .+++++.||.|++||
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd 189 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD 189 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence 456788898875 55555 57799999999999999999999999999999999999999988 899999999999999
Q ss_pred ecCCC--------CcCeEEeec---CCCceEEEeeccCeEEEEEccCCcceeee---------------------Eeeec
Q psy17863 126 VKSRS--------HHPIQCCLD---SKDSQIFCGSSDGKIYKWQLVDSSQISTL---------------------IHSVG 173 (341)
Q Consensus 126 ~~~~~--------~~~~~~~~~---~~~~~~~~~~~~g~i~~~d~~~~~~~~~~---------------------~~~~~ 173 (341)
+++++ ...+.++.. +++..+++++.||.+++||+++....... ....+
T Consensus 190 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (464)
T 3v7d_B 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC
T ss_pred CCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc
Confidence 98753 233433333 45578999999999999999887644321 12223
Q ss_pred CceEEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeee
Q psy17863 174 KAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEE 245 (341)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 245 (341)
...+.++ ++++..+++++ ++.+++||+.... +...+.+++|+|+++++++++.||.|++||+++++.+..
T Consensus 270 ~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~ 347 (464)
T 3v7d_B 270 MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 347 (464)
T ss_dssp SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence 3445554 57777777776 6899999987643 788999999999999999999999999999999999999
Q ss_pred ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEcc
Q psy17863 246 YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 325 (341)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~ 325 (341)
+.+|...+..+ +++ +++|++++.||.|++||+.+++...... +...+..++|+|++++|++++|+.|++|++.
T Consensus 348 ~~~h~~~v~~~--~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~ 420 (464)
T 3v7d_B 348 LQGHTALVGLL--RLS--DKFLVSAAADGSIRGWDANDYSRKFSYH---HTNLSAITTFYVSDNILVSGSENQFNIYNLR 420 (464)
T ss_dssp ECCCSSCEEEE--EEC--SSEEEEEETTSEEEEEETTTCCEEEEEE---CTTCCCEEEEEECSSEEEEEETTEEEEEETT
T ss_pred EeCCCCcEEEE--EEc--CCEEEEEeCCCcEEEEECCCCceeeeec---CCCCccEEEEEeCCCEEEEecCCeEEEEECC
Confidence 99999999887 555 5799999999999999999887665553 6778888999999999999999999999998
Q ss_pred cccCC
Q psy17863 326 EDYGQ 330 (341)
Q Consensus 326 ~~~~~ 330 (341)
++...
T Consensus 421 ~g~~~ 425 (464)
T 3v7d_B 421 SGKLV 425 (464)
T ss_dssp TCCEE
T ss_pred CCcEE
Confidence 87544
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-37 Score=259.18 Aligned_cols=248 Identities=17% Similarity=0.295 Sum_probs=205.8
Q ss_pred eeeEEee-eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 5 CVQTIDC-KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 5 ~~~~l~~-h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
....+.. |...|++++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ ++++++++.||.|++||
T Consensus 125 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d 202 (401)
T 4aez_A 125 VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHD 202 (401)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE
T ss_pred EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEe
Confidence 3444554 78999999999999999999999999999999999999999999999999994 67999999999999999
Q ss_pred CC-CCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 84 VT-TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 84 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
++ .+..+..+..|...|.+++|+|++++|++++.|+.|++||+++..
T Consensus 203 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-------------------------------- 250 (401)
T 4aez_A 203 VRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-------------------------------- 250 (401)
T ss_dssp TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS--------------------------------
T ss_pred cccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC--------------------------------
Confidence 98 566788888999999999999999999999999999999987643
Q ss_pred cceeeeEeeecCceEEEEEECCCCc-eEEEeC---CCceEEEEccccc------CCCCeEEEEEccCCCEEEE--eecCC
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRK-HIMSAC---GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILT--CSTDE 230 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~--~~~d~ 230 (341)
....+ ..+...+.+++|+|++. ++++++ ++.+++||+.... +...+.+++|+|+++++++ |+.||
T Consensus 251 -~~~~~--~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg 327 (401)
T 4aez_A 251 -PKFTK--TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDN 327 (401)
T ss_dssp -EEEEE--CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTC
T ss_pred -ccEEe--cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCC
Confidence 11111 12445689999999775 445443 6899999987654 6778999999999999999 55899
Q ss_pred eEEEEecccccee--eeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 231 CLRLFDKATGELL--EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 231 ~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
.|++||+.+++.. ..+.+|...+..+ +++|++++|++++.||.|++|++.+++.+....
T Consensus 328 ~i~v~~~~~~~~~~~~~~~~h~~~v~~~--~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 328 NLSIWSYSSSGLTKQVDIPAHDTRVLYS--ALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSCCCEE--EECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred cEEEEecCCccceeEEEecCCCCCEEEE--EECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 9999999986544 4567899999888 899999999999999999999999988776654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-37 Score=258.94 Aligned_cols=249 Identities=15% Similarity=0.299 Sum_probs=208.3
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCC
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 87 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 87 (341)
.+.+|...|++++|+|+|++||+|+.||.|++||+.+++.+..+.+|...+.++.++ +..|++|+.|+.+++||....
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~ 219 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA 219 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc
Confidence 344678899999999999999999999999999999999999999999999988875 679999999999999998764
Q ss_pred -ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCccee
Q psy17863 88 -QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 166 (341)
Q Consensus 88 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~ 166 (341)
..+..+.+|...+..+.++|+++++++++.|+.+++|+...++.... .+.
T Consensus 220 ~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~-----------------------------~~~ 270 (420)
T 4gga_A 220 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-----------------------------PLQ 270 (420)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSC-----------------------------CSE
T ss_pred ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccce-----------------------------eee
Confidence 45677889999999999999999999999999999999987652111 111
Q ss_pred eeEeeecCceEEEEEECCCCceEE-Ee---CCCceEEEEccccc------CCCCeEEEEEccCCCEEEEee--cCCeEEE
Q psy17863 167 TLIHSVGKAVVNSLCSHPTRKHIM-SA---CGNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCS--TDECLRL 234 (341)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~--~d~~i~i 234 (341)
....+. ..|..++|+|.+..++ ++ .++.|++||+.... ....+.++.|+|+++.+++++ .|+.|++
T Consensus 271 ~~~~~~--~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~i 348 (420)
T 4gga_A 271 TFTQHQ--GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVI 348 (420)
T ss_dssp EECCCS--SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEE
T ss_pred eecccC--CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEE
Confidence 111111 2488899999776544 32 25899999998754 667899999999999988765 7899999
Q ss_pred EeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 235 FDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 235 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
||+.+++++.++.+|...|..+ +|+|+|++|++|+.|++|+|||+.+..+.....
T Consensus 349 wd~~~~~~v~~l~gH~~~V~~l--~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~ 403 (420)
T 4gga_A 349 WKYPTMAKVAELKGHTSRVLSL--TMSPDGATVASAAADETLRLWRCFELDPARRRE 403 (420)
T ss_dssp EETTTCCEEEEECCCSSCEEEE--EECTTSSCEEEEETTTEEEEECCSCSSCC----
T ss_pred EECCCCcEEEEEcCCCCCEEEE--EEcCCCCEEEEEecCCeEEEEECCCCCccchhh
Confidence 9999999999999999999988 899999999999999999999998877666555
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=268.70 Aligned_cols=283 Identities=11% Similarity=0.215 Sum_probs=219.4
Q ss_pred EccCCCEEEEEeCCCeEEEEcCCCcceeeEe-cCcccceeEEEEec-CCCEEEEecCCCcEEEEECCC---Cce---eee
Q psy17863 21 FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTY-GGHAHEVNDATAAC-DSSQIASGASDKSVILWEVTT---GQP---VRR 92 (341)
Q Consensus 21 ~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~---~~~---~~~ 92 (341)
|+|+++.+++++ .|+ .+++.+..+ .+|.+.|++++|+| ++++|++|+.||+|++||+.+ +.. ...
T Consensus 35 f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~ 107 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT 107 (437)
T ss_dssp GCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred cCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence 566677777655 488 567888888 88999999999999 999999999999999999876 432 223
Q ss_pred ecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeee
Q psy17863 93 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV 172 (341)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~ 172 (341)
+ .|...|.+++|+|++++|++++.||.|++||++....... +.... ...+..+....
T Consensus 108 ~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-------------------~~~~~---~~~i~~~~~~~ 164 (437)
T 3gre_A 108 Y-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESE-------------------VKFLN---CECIRKINLKN 164 (437)
T ss_dssp E-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTE-------------------EEEEE---EEEEEEEEGGG
T ss_pred c-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCce-------------------eeccc---cceeEEEEccC
Confidence 3 4899999999999999999999999999999963210000 00000 00111111111
Q ss_pred --cCceEEEEE--ECCCCceEEEeC-CCceEEEEccccc---------CCCCeEEEEEccCCCEEEEeecCCeEEEEecc
Q psy17863 173 --GKAVVNSLC--SHPTRKHIMSAC-GNNVKLWTAEEDY---------GQEPIVDACFTRDCQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 173 --~~~~~~~~~--~~~~~~~~~~~~-~~~i~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 238 (341)
....+.++. +++++..+++++ ++.+++||+.... |...|.+++|+|++++|++++.||.|++||++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 244 (437)
T 3gre_A 165 FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR 244 (437)
T ss_dssp GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 233455555 678888888877 4899999987643 56899999999999999999999999999999
Q ss_pred ccceeeeec-CcccceeEEEE--EeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEee----------------------
Q psy17863 239 TGELLEEYK-GHKSGDFRIEC--CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS---------------------- 293 (341)
Q Consensus 239 ~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------- 293 (341)
+++++..+. .|...+..+.+ .+++++.+|++|+.||.|++||+.+++.+..+...
T Consensus 245 ~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (437)
T 3gre_A 245 FNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFC 324 (437)
T ss_dssp TTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred CccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceec
Confidence 999988886 67777877743 24467889999999999999999999888777621
Q ss_pred --eeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCccce
Q psy17863 294 --VGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQAGLS 334 (341)
Q Consensus 294 --~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~~~~ 334 (341)
.|...|++++|+ ++++|++++ |+.|++|++.++.....+.
T Consensus 325 ~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 325 GIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp CCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred ccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEe
Confidence 166779999999 789999999 9999999999877655443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-37 Score=256.63 Aligned_cols=239 Identities=16% Similarity=0.189 Sum_probs=211.0
Q ss_pred ecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCc--eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC
Q psy17863 51 YGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ--PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 128 (341)
Q Consensus 51 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 128 (341)
+..|..+|++++|+|++++|++++.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||+++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45589999999999999999999999999999999887 8888999999999999999999999999999999999875
Q ss_pred CCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-
Q psy17863 129 RSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY- 206 (341)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~- 206 (341)
++ .........+...+.+++|+|+++++++++ ++.+++|++....
T Consensus 84 ~~---------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~ 130 (372)
T 1k8k_C 84 RT---------------------------------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 130 (372)
T ss_dssp TE---------------------------------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT
T ss_pred Ce---------------------------------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc
Confidence 43 111111122455699999999999988876 5899999987643
Q ss_pred ----------CCCCeEEEEEccCCCEEEEeecCCeEEEEec------------------cccceeeeecCcccceeEEEE
Q psy17863 207 ----------GQEPIVDACFTRDCQCILTCSTDECLRLFDK------------------ATGELLEEYKGHKSGDFRIEC 258 (341)
Q Consensus 207 ----------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~------------------~~~~~~~~~~~~~~~~~~~~~ 258 (341)
+...+.+++|+|+++++++++.|+.|++||+ ..++.+..+.+|...+..+
T Consensus 131 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-- 208 (372)
T 1k8k_C 131 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV-- 208 (372)
T ss_dssp EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE--
T ss_pred ceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEE--
Confidence 5788999999999999999999999999995 4677888888999988888
Q ss_pred EeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEccc
Q psy17863 259 CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 259 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
+++|++++|++++.||.|++||+.+++++..+. .|..+|.+++|+|++++|+++.|+.|++|++..
T Consensus 209 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 209 CFSANGSRVAWVSHDSTVCLADADKKMAVATLA--SETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE--CSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred EECCCCCEEEEEeCCCEEEEEECCCCceeEEEc--cCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 899999999999999999999999999999998 788899999999999999988899999999987
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=266.95 Aligned_cols=269 Identities=9% Similarity=0.052 Sum_probs=207.0
Q ss_pred eeEEeeeCCcEEEEEEccC------CCEEEEEeCCCeEEEEcCCCcce-----------eeEecCcccceeEEEEecCCC
Q psy17863 6 VQTIDCKQGAIRAVRFNVD------GSYCLTCGSDKKIKLWNPYRNLL-----------LKTYGGHAHEVNDATAACDSS 68 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~------~~~l~t~~~dg~i~iw~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~ 68 (341)
..++.+|.+.|.+++|+|+ +.+||+++.||+|++||+.+++. ...+.+|...|++++|+++ .
T Consensus 200 ~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~ 278 (524)
T 2j04_B 200 VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-T 278 (524)
T ss_dssp EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-S
T ss_pred EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-C
Confidence 3457788999999999997 57999999999999999976642 2467889999999999986 4
Q ss_pred EEEEecCCCcEEEEECCCCc-eeeeecccCccEEEE--EEcCCC-cEEEEecCCCeEEEEEecCCCC----------cCe
Q psy17863 69 QIASGASDKSVILWEVTTGQ-PVRRWREHASKVTCV--KFNEDS-SVVISGSQDNTVMMWDVKSRSH----------HPI 134 (341)
Q Consensus 69 ~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~iwd~~~~~~----------~~~ 134 (341)
.|++|+.||+|++||+++++ +...+.+|...|.++ +|+|++ .+|++++.|++|++||+++++. ..+
T Consensus 279 ~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v 358 (524)
T 2j04_B 279 TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNL 358 (524)
T ss_dssp EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSC
T ss_pred eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcc
Confidence 89999999999999999774 455688999999999 568887 8999999999999999976331 112
Q ss_pred -EEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccccCC----
Q psy17863 135 -QCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ---- 208 (341)
Q Consensus 135 -~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~---- 208 (341)
.....+....+++++.|++|++||+++......+.. +...|.+++|+|+++.+++++ ++.+++|+.......
T Consensus 359 ~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g--H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~ 436 (524)
T 2j04_B 359 VPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS--RETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKN 436 (524)
T ss_dssp CCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE--CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC--
T ss_pred cceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec--CCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhcccccc
Confidence 233444466899999999999999999887666654 566799999999999988876 589999998654311
Q ss_pred -------CCeEEEEEccCCCEEEEeecCCeEEEEecc-ccceeeeecCcccceeEEEEEeCCCCC---EEEEecCCCcEE
Q psy17863 209 -------EPIVDACFTRDCQCILTCSTDECLRLFDKA-TGELLEEYKGHKSGDFRIECCLDSKDS---QIFCGSSDGKIY 277 (341)
Q Consensus 209 -------~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~dg~i~ 277 (341)
..+.+++|+|+++.+.. .. ...+|+.. ++..+..+.+|...|..+ +|+|+++ .+|+|+.||.|+
T Consensus 437 ~~~~~~~~~v~~v~~sp~g~~~~~-~~--~~~~~~~~~~g~~~~~l~gh~~~V~~V--afsp~~~~~~~lAsg~~~g~vr 511 (524)
T 2j04_B 437 SSATQKSLRLWKWDYSIKDDKYRI-DS--SYEVYPLTVNDVSKAKIDAHGINITCT--KWNETSAGGKCYAFSNSAGLLT 511 (524)
T ss_dssp ----CCCCEEEECBCCSSSCEEEE-CC--CCCCCC-------------CCCSCCCE--EECCSTTTTTEEEEECTTSEEE
T ss_pred CccceeeeEEEEeccCCCCCeEEc-cC--CceecccccCCcceeeecCCCceEEEE--ECCCCCCccHHHHhhccCceEE
Confidence 14678999999985532 22 33444433 467788899999999988 8999854 999999999999
Q ss_pred EEeee
Q psy17863 278 KWQLV 282 (341)
Q Consensus 278 iwd~~ 282 (341)
||++.
T Consensus 512 lw~l~ 516 (524)
T 2j04_B 512 LEYLS 516 (524)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 99975
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-36 Score=255.85 Aligned_cols=266 Identities=22% Similarity=0.398 Sum_probs=228.4
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
.+++.++.+|.+.|.+++|+ ++++++|+.||.|++||+.+++.+..+.+|...|.++.|+ ++.+++++.||.|++|
T Consensus 149 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~w 224 (445)
T 2ovr_B 149 GKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVW 224 (445)
T ss_dssp CCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEE
T ss_pred CcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEE
Confidence 46778899999999999997 5699999999999999999999999999999999999996 5689999999999999
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------CcCeEEeecCCCceEEEeeccCeE
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~i 154 (341)
|+.+++.+..+.+|...|.+++| +++++++++.||.|++||+++++ ...+..+.. .+..+++++.||.|
T Consensus 225 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i 301 (445)
T 2ovr_B 225 DIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSI 301 (445)
T ss_dssp ESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-CSSEEEEEETTSCE
T ss_pred ECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE-CCCEEEEEeCCCeE
Confidence 99999999999999999999999 67899999999999999987643 233444444 67789999999999
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc----------CCCCeEEEEEccCCCEE
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY----------GQEPIVDACFTRDCQCI 223 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~----------~~~~i~~~~~~~~~~~l 223 (341)
++||+++++....+.. +...+.++.++ +..+++++ ++.+++||+.... +..+|.+++|+ ++++
T Consensus 302 ~i~d~~~~~~~~~~~~--~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 375 (445)
T 2ovr_B 302 RVWDVETGNCIHTLTG--HQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFV 375 (445)
T ss_dssp EEEETTTCCEEEEECC--CCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEE
T ss_pred EEEECCCCCEEEEEcC--CcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEE
Confidence 9999999887776654 34457777664 45666655 6899999986533 66789999985 5899
Q ss_pred EEeecCCeEEEEeccccceeeee-----cCcccceeEEEEEeCCCCCEEEEecCCCc----EEEEeeeC
Q psy17863 224 LTCSTDECLRLFDKATGELLEEY-----KGHKSGDFRIECCLDSKDSQIFCGSSDGK----IYKWQLVD 283 (341)
Q Consensus 224 ~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~----i~iwd~~~ 283 (341)
++++.||.|++||+.+++.+..+ .+|...+..+ +++|++.++++|+.||+ |.+||+..
T Consensus 376 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 376 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI--RASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEE--EECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEE--EecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 99999999999999999988887 4677778777 89999999999999998 99999865
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=262.21 Aligned_cols=280 Identities=12% Similarity=0.069 Sum_probs=216.4
Q ss_pred eeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCcee
Q psy17863 11 CKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV 90 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 90 (341)
.-...|.+++|+|||+++|+++.|++|+ |...+ ..+++|...|.+++|+|+| .++.+.+|+ ++..
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~---~~~~ 77 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFEL---AQQN 77 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSC---CCSS
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEe---CCCc
Confidence 3457899999999999999999999999 65444 4457999999999999998 455555555 3332
Q ss_pred eeec-ccCccEEEEEEcCCCcEEEEecCCCeEEEEEec------CCCC----cCeEE-eecCCCceEEEeeccCeEEEEE
Q psy17863 91 RRWR-EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK------SRSH----HPIQC-CLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 91 ~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~------~~~~----~~~~~-~~~~~~~~~~~~~~~g~i~~~d 158 (341)
..+. .|...|.+++|+|+|++|++++.||.|++||.+ .... ..+.. .+.+++..+++|+.||+|++||
T Consensus 78 ~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 78 GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFS 157 (588)
T ss_dssp CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEE
T ss_pred eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEE
Confidence 2332 458899999999999999999999999999932 1221 12444 4556667999999999999999
Q ss_pred ccCCcc-------eeeeEe--eecCceEEEEEECCCCceEEEeCCCceEEEEccccc-----------CCCCeEEEEEcc
Q psy17863 159 LVDSSQ-------ISTLIH--SVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY-----------GQEPIVDACFTR 218 (341)
Q Consensus 159 ~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------~~~~i~~~~~~~ 218 (341)
+.++.. +..+.. ..+...|.+++|+|++ +++++.++.+++|++.... |...|.+++|+
T Consensus 158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs- 235 (588)
T 2j04_A 158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV- 235 (588)
T ss_dssp CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred CCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence 998753 233321 2245689999999999 7777888999999986533 45679999999
Q ss_pred CCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEe--CCCCCEEEEecCCCcEEEEeeeC-------------
Q psy17863 219 DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCL--DSKDSQIFCGSSDGKIYKWQLVD------------- 283 (341)
Q Consensus 219 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~------------- 283 (341)
++.+++++ ++.|++||+.+++......+|...+..+ ++ +|++..++++++||+ ++|....
T Consensus 236 -g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~v--a~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~ 310 (588)
T 2j04_A 236 -DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHII--PLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYL 310 (588)
T ss_dssp -TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEE--EETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHH
T ss_pred -CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEE--EeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEc
Confidence 58888887 6999999999877744444899999988 88 999999999999999 9998631
Q ss_pred ----------CCceEEEEeeeeccceEEEEEcCCCcEEEEeC
Q psy17863 284 ----------SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 284 ----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
++.+..+ .+...|.+++|||||+.+|+++
T Consensus 311 d~~v~lW~~~g~~l~~~---~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 311 EKKFKKWSTIWNEFNNY---ETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp HHHHHHTTTTTTSSSSS---CCEEEEEEEEECTTSSEEEEEE
T ss_pred CCEEEEEECCCCceeee---ccceEEEEEEECCCCCEEEEEE
Confidence 1111111 1245699999999999999987
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=256.73 Aligned_cols=277 Identities=13% Similarity=0.143 Sum_probs=219.9
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc---eeeEecC------------------------------------
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL---LLKTYGG------------------------------------ 53 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~---~~~~~~~------------------------------------ 53 (341)
..++++++|+|+|++|+++ .++.|++||+.+++ .+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999966665 57899999999888 5555543
Q ss_pred ------------------cccceeEEEEecCCCEE-EEecCCCcEEEEECC--CCceeeeec--ccCccEEEEEEcCCCc
Q psy17863 54 ------------------HAHEVNDATAACDSSQI-ASGASDKSVILWEVT--TGQPVRRWR--EHASKVTCVKFNEDSS 110 (341)
Q Consensus 54 ------------------~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~ 110 (341)
|...|.+++|+|++++| ++++.||.|++||+. +++.+..+. .|...|.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 23369999999999996 899999999999999 888888876 5678999999999999
Q ss_pred EEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCC---Cc
Q psy17863 111 VVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT---RK 187 (341)
Q Consensus 111 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 187 (341)
+|++++.+|.+++|++.+...... ....+. .+...+.+++|+|+ ++
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~-----------------------------~~~~~~--~h~~~v~~~~~sp~~~~~~ 211 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKF-----------------------------TQEPIL--GHVSMLTDVHLIKDSDGHQ 211 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSC-----------------------------CCCCSE--ECSSCEEEEEEEECTTSCE
T ss_pred EEEEEeCCCcEEEEecCCcccccc-----------------------------cceeee--cccCceEEEEEcCCCCCCc
Confidence 999999999999999876542110 111111 24467999999999 88
Q ss_pred eEEEeC-CCceEEEEccccc--------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCc---------
Q psy17863 188 HIMSAC-GNNVKLWTAEEDY--------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGH--------- 249 (341)
Q Consensus 188 ~~~~~~-~~~i~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--------- 249 (341)
++++++ ++.|++|++.... |...|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+
T Consensus 212 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 290 (450)
T 2vdu_B 212 FIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLND 290 (450)
T ss_dssp EEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCT
T ss_pred EEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhh
Confidence 888776 5899999987532 67899999999 9999999999999999999999988877633
Q ss_pred ----------------ccceeEEEEEeCCCCCEEEEec-CCCcEEEEee--eCC---CceEEEEeeeeccceEEEEEcCC
Q psy17863 250 ----------------KSGDFRIECCLDSKDSQIFCGS-SDGKIYKWQL--VDS---SQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 250 ----------------~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
...+..+ +++|+++++++++ .|+.|++|++ .++ +.+..+. .+ ..|.+++|+|+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~v~~i--~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~--~~-~~v~~~~~~~~ 365 (450)
T 2vdu_B 291 QHLAPPRFQNENNDIIEFAVSKI--IKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT--FP-YNVISLSAHND 365 (450)
T ss_dssp TSBC----------CBCCCEEEE--EECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE--CS-SCEEEEEEETT
T ss_pred cccccccccccccccceEEEEEE--EEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEec--cC-CceEEEEecCC
Confidence 2334444 8899999999998 8999999999 555 4445555 45 88999999996
Q ss_pred CcEEEEeC-C------CcEEEEEcccc
Q psy17863 308 RKHIMSAC-G------NNVKLWTAEED 327 (341)
Q Consensus 308 ~~~l~~~~-d------~~i~vw~~~~~ 327 (341)
+.++++++ + ..|.+|.++..
T Consensus 366 ~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 366 EFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred cEEEEEecccCCCCCCcceEEEEEEcC
Confidence 55554444 3 34899987654
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=262.92 Aligned_cols=238 Identities=12% Similarity=0.137 Sum_probs=196.6
Q ss_pred ecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCC--ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC
Q psy17863 51 YGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG--QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 128 (341)
Q Consensus 51 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 128 (341)
+..+.++|++++|+|++++|++++.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 4446779999999999999999999999999999988 78888999999999999999999999999999999999876
Q ss_pred CCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-
Q psy17863 129 RSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY- 206 (341)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~- 206 (341)
+... .. ......+...+.+++|+|+++.+++++ ++.+++|++....
T Consensus 87 ~~~~------------------------------~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 134 (377)
T 3dwl_C 87 DGTW------------------------------KQ--TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND 134 (377)
T ss_dssp --CC------------------------------CC--EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----
T ss_pred CCce------------------------------ee--eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc
Confidence 5300 00 111122456799999999998888776 5899999987653
Q ss_pred ----------CCCCeEEEEEccCCCEEEEeecCCeEEEEecc------------------ccceeeeecCcccceeEEEE
Q psy17863 207 ----------GQEPIVDACFTRDCQCILTCSTDECLRLFDKA------------------TGELLEEYKGHKSGDFRIEC 258 (341)
Q Consensus 207 ----------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~------------------~~~~~~~~~~~~~~~~~~~~ 258 (341)
|...|.+++|+|++++|++++.|+.|++||+. .++++..+ +|...+..+
T Consensus 135 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~-- 211 (377)
T 3dwl_C 135 WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAV-- 211 (377)
T ss_dssp CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEE--
T ss_pred ceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEE--
Confidence 78899999999999999999999999999984 45667777 899888888
Q ss_pred EeCCCCCEEEEecCCCcEEEEeeeCCCc----eEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEcc
Q psy17863 259 CLDSKDSQIFCGSSDGKIYKWQLVDSSQ----ISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 325 (341)
Q Consensus 259 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~ 325 (341)
+|+|++++|++++.||.|++||+.+++. +..+. .|..+|.+++|+|++++|++++++.+.+|+..
T Consensus 212 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 212 GFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK--LSQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp EECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE--CSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec--CCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 8999999999999999999999999988 66677 88999999999999999999995555677765
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-36 Score=248.37 Aligned_cols=243 Identities=12% Similarity=0.200 Sum_probs=213.9
Q ss_pred eeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEe
Q psy17863 47 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126 (341)
Q Consensus 47 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 126 (341)
....+.+|...|++++|+|++++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC------CceEEE
Q psy17863 127 KSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG------NNVKLW 200 (341)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~ 200 (341)
++++ ....+. ....+.+++|+|+++.++++.. +.+.+|
T Consensus 104 ~~~~---------------------------------~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~ 147 (369)
T 3zwl_B 104 SNGQ---------------------------------CVATWK---SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIY 147 (369)
T ss_dssp TTCC---------------------------------EEEEEE---CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEE
T ss_pred CCCc---------------------------------EEEEee---cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEE
Confidence 7644 111111 3456899999999999988764 699999
Q ss_pred Eccccc------------------CCC--CeEEEEEccCCCEEEEeecCCeEEEEeccc-cceeeeecCcccceeEEEEE
Q psy17863 201 TAEEDY------------------GQE--PIVDACFTRDCQCILTCSTDECLRLFDKAT-GELLEEYKGHKSGDFRIECC 259 (341)
Q Consensus 201 ~~~~~~------------------~~~--~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~ 259 (341)
++.... +.. .+.+++|+|+++++++++.||.|++||+++ ++.+..+..|...+..+ +
T Consensus 148 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~--~ 225 (369)
T 3zwl_B 148 EIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM--Q 225 (369)
T ss_dssp EEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE--E
T ss_pred EecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE--E
Confidence 987653 122 899999999999999999999999999998 78888999999998888 8
Q ss_pred eCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CC--------------cEEEEEc
Q psy17863 260 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GN--------------NVKLWTA 324 (341)
Q Consensus 260 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~--------------~i~vw~~ 324 (341)
|+|++++|++++.||.|++||+.+++.+..+. +...+..++|+|+++++++++ ++ .+++|++
T Consensus 226 ~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~ 302 (369)
T 3zwl_B 226 FSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHK 302 (369)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEET
T ss_pred ECCCCCEEEEecCCceEEEEECCCCceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEec
Confidence 99999999999999999999999999888876 678899999999999999999 77 8999998
Q ss_pred ccccCC
Q psy17863 325 EEDYGQ 330 (341)
Q Consensus 325 ~~~~~~ 330 (341)
..+...
T Consensus 303 ~~~~~~ 308 (369)
T 3zwl_B 303 IFEEEI 308 (369)
T ss_dssp TTCCEE
T ss_pred CCCcch
Confidence 776543
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-38 Score=261.46 Aligned_cols=267 Identities=16% Similarity=0.130 Sum_probs=181.7
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCccee-----eEecCcccceeEEEEec--------CCCEEEEecCCCcEE
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLL-----KTYGGHAHEVNDATAAC--------DSSQIASGASDKSVI 80 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~-----~~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg~i~ 80 (341)
..+....+++++.+|++++.|++|+|||..+++.. ..+.+|.+.|++++|+| |+++|++++.|++|+
T Consensus 90 ~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~ 169 (393)
T 4gq1_A 90 GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLI 169 (393)
T ss_dssp -------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEE
T ss_pred CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEE
Confidence 33334444556678999999999999998877543 34679999999999998 789999999999999
Q ss_pred EEECCCCceeeeecccCccEEEEEEcCCC-cEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEc
Q psy17863 81 LWEVTTGQPVRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQL 159 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~ 159 (341)
+||+.++.++..+..|..++.+++|+|++ .+|++++.|++|++||+++++...........
T Consensus 170 ~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~------------------ 231 (393)
T 4gq1_A 170 IWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV------------------ 231 (393)
T ss_dssp EEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------C------------------
T ss_pred EEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCc------------------
Confidence 99999988888888899999999999976 48999999999999999876521110000000
Q ss_pred cCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEc-cCCCEEEEeecCCeEEEEecc
Q psy17863 160 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFT-RDCQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~ 238 (341)
....+......+..... ....+...+.++.|+ |+++.+++++.|+.+++||+.
T Consensus 232 -------------~~~~~~s~~~~~~~~~~-------------~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~ 285 (393)
T 4gq1_A 232 -------------KNPWLLTLNTLPLVNTC-------------HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF 285 (393)
T ss_dssp -------------SCCCSEEEESGGGC-------------------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-
T ss_pred -------------ccceEEecccccceeee-------------ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc
Confidence 00000011111100000 011245677888876 799999999999999999998
Q ss_pred ccceeeeecCcccceeEEE----------------EEeC--CCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceE
Q psy17863 239 TGELLEEYKGHKSGDFRIE----------------CCLD--SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN 300 (341)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~----------------~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 300 (341)
.++....+..|...+..+. ..++ .++.++++|+.||.|++||+.+++....+. .|..+|+
T Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~--~~~~~V~ 363 (393)
T 4gq1_A 286 ANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI--QLGMPIV 363 (393)
T ss_dssp ------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE--ECSSCEE
T ss_pred cCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec--CCCCcEE
Confidence 8776666655544333221 1222 245567889999999999999999888877 7889999
Q ss_pred EEEEcCCCcEEEEeCCCcEEEEEccc
Q psy17863 301 SLCSHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 301 ~~~~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
+++|+|||++||+++++.+.+|++..
T Consensus 364 svafspdG~~LA~as~~Gv~lvrL~g 389 (393)
T 4gq1_A 364 DFCWHQDGSHLAIATEGSVLLTRLMG 389 (393)
T ss_dssp EEEECTTSSEEEEEESSEEEEEEEGG
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEeC
Confidence 99999999999999977788888754
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-37 Score=256.68 Aligned_cols=257 Identities=12% Similarity=0.129 Sum_probs=209.8
Q ss_pred ceeeeEEeeeCCcEEEEEEccC----C---CEEEEEeCCCeEEEEcCCCcce-----eeEecCc-----ccceeEEEEe-
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVD----G---SYCLTCGSDKKIKLWNPYRNLL-----LKTYGGH-----AHEVNDATAA- 64 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~----~---~~l~t~~~dg~i~iw~~~~~~~-----~~~~~~~-----~~~v~~~~~~- 64 (341)
++++..+.+|..+|++++|+|+ + ++|++++.||.|++||+.+++. ...+..| ...|.+++|+
T Consensus 52 ~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 131 (397)
T 1sq9_A 52 KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 131 (397)
T ss_dssp GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEEC
T ss_pred CCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEee
Confidence 4578889999999999999999 9 9999999999999999998887 8888888 5999999999
Q ss_pred ---cCCCE-EEEecCCCcEEEEECCC------Cceee-----ee-------cccCccEEEEEEcCCCcEEEEecCCCeEE
Q psy17863 65 ---CDSSQ-IASGASDKSVILWEVTT------GQPVR-----RW-------REHASKVTCVKFNEDSSVVISGSQDNTVM 122 (341)
Q Consensus 65 ---~~~~~-l~~~~~dg~i~iw~~~~------~~~~~-----~~-------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 122 (341)
|++++ |++++.||.|++||+.+ ++.+. .+ ..|...|.+++|+|++ ++++++.||.|+
T Consensus 132 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~ 210 (397)
T 1sq9_A 132 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQ 210 (397)
T ss_dssp CC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEE
T ss_pred ccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEE
Confidence 99999 99999999999999998 66666 66 3488999999999999 999999999999
Q ss_pred EEEecCCC--------------CcCeEEee-cCCCceEEEeecc---CeEEEEEccCCcceeeeEeeecCceEEEEEECC
Q psy17863 123 MWDVKSRS--------------HHPIQCCL-DSKDSQIFCGSSD---GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 184 (341)
Q Consensus 123 iwd~~~~~--------------~~~~~~~~-~~~~~~~~~~~~~---g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (341)
+||+++.+ ...+..+. .+.+..+++++.| |.|++||+++.+.+..+......
T Consensus 211 i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~---------- 280 (397)
T 1sq9_A 211 ISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS---------- 280 (397)
T ss_dssp EEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-------------
T ss_pred EEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccc----------
Confidence 99987642 22334433 3456689999999 99999999987765554321100
Q ss_pred CCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeec------Cc---------
Q psy17863 185 TRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK------GH--------- 249 (341)
Q Consensus 185 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------~~--------- 249 (341)
... . .....+...|.+++|+|++++|++++.|+.|++||+++++.+..+. +|
T Consensus 281 ~~~-~------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 347 (397)
T 1sq9_A 281 SQA-S------------LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDE 347 (397)
T ss_dssp ------------------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCT
T ss_pred ccc-c------------ccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccc
Confidence 000 0 0011146789999999999999999999999999999999999998 77
Q ss_pred ------ccceeEEEEEeCCCC----------CEEEEecCCCcEEEEeeeCCC
Q psy17863 250 ------KSGDFRIECCLDSKD----------SQIFCGSSDGKIYKWQLVDSS 285 (341)
Q Consensus 250 ------~~~~~~~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~ 285 (341)
...+..+ +|+|++ ++|++++.||.|++|++.+++
T Consensus 348 ~~~~~~~~~v~~~--~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 348 HGDSLAEPGVFDV--KFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TSCBCSSCCEEEE--EEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccccccCCceeEE--EeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 8888888 888998 799999999999999998764
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=272.56 Aligned_cols=243 Identities=23% Similarity=0.397 Sum_probs=207.4
Q ss_pred eeeEecCcccceeEEEEecCC-CEEEEecCCCcEEEEECCCC-----ceeeeecccCccEEEEEEcCCCcEEEEecCCCe
Q psy17863 47 LLKTYGGHAHEVNDATAACDS-SQIASGASDKSVILWEVTTG-----QPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120 (341)
Q Consensus 47 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 120 (341)
....+++|.+.|++++|+|++ ++|++|+.|++|++|++.+. .....+.+|...|.+++|+|++++|++++.|+.
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 345688999999999999864 78999999999999999764 345678899999999999999999999999999
Q ss_pred EEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEE
Q psy17863 121 VMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKL 199 (341)
Q Consensus 121 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~ 199 (341)
|++||+.++. ....+ ..+...|.+++|+|+++.+++++ ++.+++
T Consensus 454 v~vwd~~~~~---------------------------------~~~~~--~~h~~~v~~~~~s~~~~~l~s~s~D~~i~i 498 (694)
T 3dm0_A 454 LRLWDLAAGV---------------------------------STRRF--VGHTKDVLSVAFSLDNRQIVSASRDRTIKL 498 (694)
T ss_dssp EEEEETTTTE---------------------------------EEEEE--ECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred EEEEECCCCc---------------------------------ceeEE--eCCCCCEEEEEEeCCCCEEEEEeCCCEEEE
Confidence 9999987543 11111 12455689999999998888776 588999
Q ss_pred EEcccc----------cCCCCeEEEEEccCC--CEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEE
Q psy17863 200 WTAEED----------YGQEPIVDACFTRDC--QCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQI 267 (341)
Q Consensus 200 ~~~~~~----------~~~~~i~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (341)
|+.... .|...|.+++|+|++ ..+++++.|+.|++||+++++....+.+|...+.++ +++|++++|
T Consensus 499 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v--~~spdg~~l 576 (694)
T 3dm0_A 499 WNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV--AVSPDGSLC 576 (694)
T ss_dssp ECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE--EECTTSSEE
T ss_pred EECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEE--EEeCCCCEE
Confidence 987432 267789999999987 589999999999999999999999999999999888 899999999
Q ss_pred EEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEcccccC
Q psy17863 268 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYG 329 (341)
Q Consensus 268 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~~~ 329 (341)
++|+.||.|++||+.+++.+..+. +...|.+++|+|++.+|++++++.|++||++++..
T Consensus 577 ~sg~~Dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 577 ASGGKDGVVLLWDLAEGKKLYSLE---ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSI 635 (694)
T ss_dssp EEEETTSBCEEEETTTTEEEECCB---CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEE
T ss_pred EEEeCCCeEEEEECCCCceEEEec---CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCC
Confidence 999999999999999998877765 45789999999999999888888899999987643
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=254.79 Aligned_cols=280 Identities=10% Similarity=0.087 Sum_probs=228.1
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceee-----EecCcccceeEEEEecCCCEEEEecCCCc
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLK-----TYGGHAHEVNDATAACDSSQIASGASDKS 78 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 78 (341)
+.+..+..+ ..+.+++|+|++.++++++.++.|++||+.+++... .+.+|...|.+++|+|+++++++++.|+.
T Consensus 114 ~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 114 RFISRFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred eEEEEEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 445555544 446699999988888888889999999999988877 34578889999999999999999999999
Q ss_pred EEEEECCCCceeeeecccCccEEEEEEcCCCcEEE-EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 79 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
|++||+++++.+..+..|...+.+++|+|+++.++ +++.|+.|++||+++++
T Consensus 193 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~--------------------------- 245 (433)
T 3bws_A 193 VHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL--------------------------- 245 (433)
T ss_dssp EEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE---------------------------
T ss_pred EEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc---------------------------
Confidence 99999999999999988999999999999998885 55578888888876543
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEeC---------CCceEEEEccccc------CCCCeEEEEEccCCCE
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC---------GNNVKLWTAEEDY------GQEPIVDACFTRDCQC 222 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~ 222 (341)
....+. ....+..++++|+++.++++. ++.+++||+.... +...+..++|+|+++.
T Consensus 246 ------~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~ 316 (433)
T 3bws_A 246 ------EIRKTD---KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENK 316 (433)
T ss_dssp ------EEEECC---CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTE
T ss_pred ------EEEEec---CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCE
Confidence 111111 123478999999998888776 5789999987643 3457889999999975
Q ss_pred E-EEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecC---------------CCcEEEEeeeCCCc
Q psy17863 223 I-LTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS---------------DGKIYKWQLVDSSQ 286 (341)
Q Consensus 223 l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~ 286 (341)
+ ++++.++.|++||+.+++.+..+. +...+..+ +++|+++++++++. ||.|++||+.+++.
T Consensus 317 l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~--~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 317 IYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTI--ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEE--EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred EEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeE--EEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 5 566889999999999988887776 45556655 89999998888776 57999999999988
Q ss_pred eEEEEeeeeccceEEEEEcCCCcEEEEeC--CCcEEEEEccc
Q psy17863 287 ISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEE 326 (341)
Q Consensus 287 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~ 326 (341)
+..+. . ...+.+++|+|++++|++++ |+.|++|++++
T Consensus 394 ~~~~~--~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 394 KEFWE--A-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEE--C-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEec--C-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 88776 3 56789999999999988764 99999999864
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=249.27 Aligned_cols=239 Identities=15% Similarity=0.211 Sum_probs=199.9
Q ss_pred eeeCCcEEEEEEccC---CCEEEEEeCCCeEEEEcCCCcc-eeeEecCcccceeEEEE------ecCCCEEEEecCCCcE
Q psy17863 10 DCKQGAIRAVRFNVD---GSYCLTCGSDKKIKLWNPYRNL-LLKTYGGHAHEVNDATA------ACDSSQIASGASDKSV 79 (341)
Q Consensus 10 ~~h~~~v~~~~~~~~---~~~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~dg~i 79 (341)
.+|..+|++++|+|+ +++|++|+.||.|++||+.+++ .+..+.+|...|.++.| +|++++|++++.||.|
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 379999999999998 6999999999999999999888 88899999999999965 6789999999999999
Q ss_pred EEEECCCCc-eeeeecccCc----cEEEEE----EcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeec
Q psy17863 80 ILWEVTTGQ-PVRRWREHAS----KVTCVK----FNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSS 150 (341)
Q Consensus 80 ~iw~~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (341)
++||+.+++ .+..+..|.. .+.+++ |+|+++++++++.||.|++||+++++
T Consensus 142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-------------------- 201 (357)
T 3i2n_A 142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-------------------- 201 (357)
T ss_dssp EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE--------------------
T ss_pred EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc--------------------
Confidence 999999887 6777765554 889998 67899999999999999999987643
Q ss_pred cCeEEEEEccCCcceeeeEeeecCceEEEEEECC---CCceEEEeC-CCceEEEEcccc------------cCCCCeEEE
Q psy17863 151 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP---TRKHIMSAC-GNNVKLWTAEED------------YGQEPIVDA 214 (341)
Q Consensus 151 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~i~~~~~~~~------------~~~~~i~~~ 214 (341)
.. ....+...+.+++|+| ++..+++++ ++.+++|++... .+...|.++
T Consensus 202 -------------~~---~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~ 265 (357)
T 3i2n_A 202 -------------LR---WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQV 265 (357)
T ss_dssp -------------EE---EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEE
T ss_pred -------------ee---eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEE
Confidence 10 0112345689999999 788777776 588999998653 477899999
Q ss_pred EEccCCC-EEEEeecCCeEEEEecccc-------------------ceeeeecCcccceeEEEEEeCCCCCEEE-EecCC
Q psy17863 215 CFTRDCQ-CILTCSTDECLRLFDKATG-------------------ELLEEYKGHKSGDFRIECCLDSKDSQIF-CGSSD 273 (341)
Q Consensus 215 ~~~~~~~-~l~~~~~d~~i~i~d~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d 273 (341)
+|+|+++ ++++++.||.|++||++++ +.+..+.+|...+..+ +|+|++++|+ +++.|
T Consensus 266 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~s~~~d 343 (357)
T 3i2n_A 266 RHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSL--DWSPDKRGLCVCSSFD 343 (357)
T ss_dssp EEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEE--EECSSSTTEEEEEETT
T ss_pred EECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEE--EEcCCCCeEEEEecCC
Confidence 9999998 8999999999999998754 4567788899999888 8999999998 89999
Q ss_pred CcEEEEeeeCCCc
Q psy17863 274 GKIYKWQLVDSSQ 286 (341)
Q Consensus 274 g~i~iwd~~~~~~ 286 (341)
|.|++||+.+.+.
T Consensus 344 ~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 344 QTVRVLIVTKLNK 356 (357)
T ss_dssp SEEEEEEECC---
T ss_pred CcEEEEECCCccc
Confidence 9999999987654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-37 Score=262.28 Aligned_cols=268 Identities=14% Similarity=0.235 Sum_probs=202.7
Q ss_pred cccceeEEEEecCCCEEEEecCCCcEEEEECCCCc-----------eeeeecccC------------ccEEEEEEcCCC-
Q psy17863 54 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ-----------PVRRWREHA------------SKVTCVKFNEDS- 109 (341)
Q Consensus 54 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~- 109 (341)
+.+.|++++|+|++++|++|+.||.|++||+.+++ ....+.+|. ..|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 67899999999999999999999999999998876 477888898 889999999988
Q ss_pred -cEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEE-------EEccCCcceeeeEeeecCceEEEEE
Q psy17863 110 -SVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYK-------WQLVDSSQISTLIHSVGKAVVNSLC 181 (341)
Q Consensus 110 -~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~-------~d~~~~~~~~~~~~~~~~~~~~~~~ 181 (341)
..|++++.|+.|++||+................+.+.....-..+.+ +... ... .......+...|.+++
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVE-ASP-RRIFANAHTYHINSIS 184 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEE-EEE-EEEECSCCSSCCCEEE
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeee-ccc-eEEeccCCCcceEEEE
Confidence 79999999999999999764321000000000000000000000000 0000 000 0111223567799999
Q ss_pred ECCCCceEEEeCCCceEEEEccc-c--------------cCCCCeEEEEEccCC-CEEEEeecCCeEEEEeccccce---
Q psy17863 182 SHPTRKHIMSACGNNVKLWTAEE-D--------------YGQEPIVDACFTRDC-QCILTCSTDECLRLFDKATGEL--- 242 (341)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~~~~~~-~--------------~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~--- 242 (341)
|+|++++++++.++.+++||+.. . .|...|.+++|+|++ ++|++++.||.|++||+++++.
T Consensus 185 ~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 185 INSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp ECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred EcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 99999999999889999999982 1 367889999999998 9999999999999999998886
Q ss_pred -eeeecCccc------------ceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC-CCceEEEEeeeeccc----------
Q psy17863 243 -LEEYKGHKS------------GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD-SSQISTLIHSVGKAV---------- 298 (341)
Q Consensus 243 -~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~---------- 298 (341)
+..+.+|.. .+..+ +|+|++++|++++. +.|++||+++ ++++..+. .|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDV--KFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ--VHEYLRSKLCSLYEN 339 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEE--EECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE--SCGGGTTTHHHHHHT
T ss_pred eeeEeccCCCccccccccccCceEEEE--EECCCCCEEEEeeC-CeEEEEeCCCCccccceee--ccccccccccccccc
Confidence 788888876 77777 89999999999999 9999999987 88888887 55432
Q ss_pred -----eEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 299 -----VNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 299 -----v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
+..++|+|++++|++++ ||.|++|++.++.
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 33499999999999999 9999999998764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=252.85 Aligned_cols=251 Identities=13% Similarity=0.158 Sum_probs=204.8
Q ss_pred cCCCcceeeEecCcccceeEEEEecCC-CEEEEecCCCcEEEEECCCCceeeeec--ccCccEEEEEEcC-CCcEEEEec
Q psy17863 41 NPYRNLLLKTYGGHAHEVNDATAACDS-SQIASGASDKSVILWEVTTGQPVRRWR--EHASKVTCVKFNE-DSSVVISGS 116 (341)
Q Consensus 41 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~ 116 (341)
+....+....+.+|...|++++|+|++ ++|++|+.||.|++||+.+++....+. +|...|.+++|+| ++++|++++
T Consensus 59 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 59 SLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp HHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred cccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 334556677888999999999999998 999999999999999999888777665 6999999999999 789999999
Q ss_pred CCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CC
Q psy17863 117 QDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GN 195 (341)
Q Consensus 117 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 195 (341)
.|+.|++||+++.. +..+. ........+.+++++|+++++++++ ++
T Consensus 139 ~d~~i~iwd~~~~~-----------------------~~~~~----------~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 185 (383)
T 3ei3_B 139 IRGATTLRDFSGSV-----------------------IQVFA----------KTDSWDYWYCCVDVSVSRQMLATGDSTG 185 (383)
T ss_dssp TTTEEEEEETTSCE-----------------------EEEEE----------CCCCSSCCEEEEEEETTTTEEEEEETTS
T ss_pred CCCEEEEEECCCCc-----------------------eEEEe----------ccCCCCCCeEEEEECCCCCEEEEECCCC
Confidence 99999999987421 11100 0111235689999999999988877 48
Q ss_pred ceEEEEccccc------CCCCeEEEEEccCCC-EEEEeecCCeEEEEeccc----cceeeeecCcccceeEEEEEeCC-C
Q psy17863 196 NVKLWTAEEDY------GQEPIVDACFTRDCQ-CILTCSTDECLRLFDKAT----GELLEEYKGHKSGDFRIECCLDS-K 263 (341)
Q Consensus 196 ~i~~~~~~~~~------~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~-~ 263 (341)
.+++||+.... |...|.+++|+|+++ ++++++.|+.|++||+++ +..+..+ +|...+..+ +|+| +
T Consensus 186 ~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~--~~s~~~ 262 (383)
T 3ei3_B 186 RLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAA--YFNPTD 262 (383)
T ss_dssp EEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEE--EECTTT
T ss_pred CEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEE--EEcCCC
Confidence 99999985432 788999999999999 999999999999999998 5566666 588888888 8999 9
Q ss_pred CCEEEEecCCCcEEEEeeeCCCceEEEEeeeec-----------------cceEEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 264 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK-----------------AVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 264 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
+++|++++.|+.|++||+.+++....+. .|. ..+..++|+|++++ +++ |+.|++||+.
T Consensus 263 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~ 338 (383)
T 3ei3_B 263 STKLLTTDQRNEIRVYSSYDWSKPDQII--IHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDAN 338 (383)
T ss_dssp SCEEEEEESSSEEEEEETTBTTSCSEEE--ECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETT
T ss_pred CCEEEEEcCCCcEEEEECCCCccccccc--cccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecC
Confidence 9999999999999999999988877776 332 34455777777776 667 9999999998
Q ss_pred cccCCc
Q psy17863 326 EDYGQA 331 (341)
Q Consensus 326 ~~~~~~ 331 (341)
++....
T Consensus 339 ~~~~~~ 344 (383)
T 3ei3_B 339 SGGLVH 344 (383)
T ss_dssp TCCEEE
T ss_pred CCceee
Confidence 765433
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-36 Score=251.78 Aligned_cols=245 Identities=19% Similarity=0.276 Sum_probs=201.1
Q ss_pred cEEEEEEccCCCEEE-EEeCCCeEEEEcCCCc----ceeeEecCcccceeEEEEec-CCCEEEEecCCCcEEEEECCCC-
Q psy17863 15 AIRAVRFNVDGSYCL-TCGSDKKIKLWNPYRN----LLLKTYGGHAHEVNDATAAC-DSSQIASGASDKSVILWEVTTG- 87 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~-t~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~- 87 (341)
....++++|+...++ +++.||.|+||++.+. ..+..+.+|...|++++|+| ++++|++++.||.|++||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 445688888765444 5788999999998654 24556788999999999999 9999999999999999999987
Q ss_pred ------ceeeeecccCccEEEEEEcCCC-cEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEcc
Q psy17863 88 ------QPVRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLV 160 (341)
Q Consensus 88 ------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~ 160 (341)
+++..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~------------------------------ 165 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA------------------------------ 165 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE------------------------------
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC------------------------------
Confidence 6678888999999999999998 699999999999999987543
Q ss_pred CCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEecccc
Q psy17863 161 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240 (341)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 240 (341)
....+. ...|...|.+++|+|++++|++++.|+.|++||++++
T Consensus 166 ---~~~~~~----------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 208 (402)
T 2aq5_A 166 ---AVLTLG----------------------------------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG 208 (402)
T ss_dssp ---EEEEEC----------------------------------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT
T ss_pred ---ccEEEe----------------------------------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC
Confidence 111110 0113567889999999999999999999999999999
Q ss_pred ceeeee-cCcccc-eeEEEEEeCCCCCEEEEe---cCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEE-Ee
Q psy17863 241 ELLEEY-KGHKSG-DFRIECCLDSKDSQIFCG---SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM-SA 314 (341)
Q Consensus 241 ~~~~~~-~~~~~~-~~~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~ 314 (341)
+.+..+ .+|... +..+ +|+|++++|++| +.|+.|++||+.+++.........+...+.+++|+|++++|+ ++
T Consensus 209 ~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g 286 (402)
T 2aq5_A 209 TVVAEKDRPHEGTRPVHA--VFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCG 286 (402)
T ss_dssp EEEEEEECSSCSSSCCEE--EECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEE
T ss_pred ceeeeeccCCCCCcceEE--EEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEE
Confidence 998888 678765 5655 899999999999 899999999999877633333225677899999999999986 56
Q ss_pred C-CCcEEEEEccccc
Q psy17863 315 C-GNNVKLWTAEEDY 328 (341)
Q Consensus 315 ~-d~~i~vw~~~~~~ 328 (341)
+ |+.|++|++.++.
T Consensus 287 ~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 287 KGDSSIRYFEITSEA 301 (402)
T ss_dssp TTCSCEEEEEECSST
T ss_pred cCCCeEEEEEecCCC
Confidence 6 9999999998765
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-37 Score=252.61 Aligned_cols=238 Identities=8% Similarity=0.006 Sum_probs=186.4
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEe-----------CCCeEEEEcCCCcceeeE----e-----cCcccceeEEEEecCC
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCG-----------SDKKIKLWNPYRNLLLKT----Y-----GGHAHEVNDATAACDS 67 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~-----------~dg~i~iw~~~~~~~~~~----~-----~~~~~~v~~~~~~~~~ 67 (341)
.|.+|...|.+++++ ++.+++|. .|+.+++|++........ . ..+...+.+++|+|||
T Consensus 68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 466788888888765 55666653 477899998765432211 1 2344568899999999
Q ss_pred CEEEE--ecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceE
Q psy17863 68 SQIAS--GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQI 145 (341)
Q Consensus 68 ~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 145 (341)
+++++ ++.|++|++||+++++++..+. |...|.+++|+|+++++++++.+ .+.+|+..++.
T Consensus 146 ~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~--------------- 208 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGS--------------- 208 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCC---------------
T ss_pred CEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCc---------------
Confidence 99765 4578999999999999988886 77889999999999999999855 45566554432
Q ss_pred EEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-C----ceEEEEcccc-----------cCCC
Q psy17863 146 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-N----NVKLWTAEED-----------YGQE 209 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~i~~~~~~~~-----------~~~~ 209 (341)
.........+...+.+++|+|+++.+++++. + .++.|+.... .+..
T Consensus 209 ------------------~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 270 (365)
T 4h5i_A 209 ------------------CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK 270 (365)
T ss_dssp ------------------EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS
T ss_pred ------------------ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCC
Confidence 1111112224566899999999999988763 2 4777876532 2678
Q ss_pred CeEEEEEccCCCEEEEeecCCeEEEEeccccceeeee-cCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCC
Q psy17863 210 PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY-KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS 284 (341)
Q Consensus 210 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (341)
+|++++|+|+|++|++|+.|+.|++||+++++++..+ .+|...|+.+ +|+|||++|++|+.|++|+|||+...
T Consensus 271 ~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v--~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 271 GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEV--TISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEE--EECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEE--EECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 8999999999999999999999999999999998875 7899999988 89999999999999999999999653
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-35 Score=238.73 Aligned_cols=245 Identities=19% Similarity=0.214 Sum_probs=203.4
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCc---ceeeEecCcccceeEEEEecCCCEEEEecCCCcE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN---LLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 79 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 79 (341)
.+....+..|...|.+++|+|++++|++++.||.|++|++... +.+..+..|...|.++.| +++++++++.||.|
T Consensus 49 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i 126 (313)
T 3odt_A 49 QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTA 126 (313)
T ss_dssp SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCE
Confidence 3567788899999999999999999999999999999997654 567788899999999999 57799999999999
Q ss_pred EEEECCCCceeeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCC-------CCcCeEEeecCCCceEEEeecc
Q psy17863 80 ILWEVTTGQPVRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSR-------SHHPIQCCLDSKDSQIFCGSSD 151 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 151 (341)
++|| .++....+..|...+.+++|.| +++++++++.||.|++||.... ....+..+...+++.+++++.+
T Consensus 127 ~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d 204 (313)
T 3odt_A 127 KVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSND 204 (313)
T ss_dssp EEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTEEEEEETT
T ss_pred EEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCeEEEccCC
Confidence 9999 6788888889999999999998 9999999999999999994431 2334555555555557778888
Q ss_pred CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCe
Q psy17863 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDEC 231 (341)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 231 (341)
|.|++||+++.+.+..+.. +..++.+++|+|++ .+++++.||.
T Consensus 205 g~i~i~d~~~~~~~~~~~~------------------------------------~~~~i~~~~~~~~~-~l~~~~~dg~ 247 (313)
T 3odt_A 205 GLIKLVDMHTGDVLRTYEG------------------------------------HESFVYCIKLLPNG-DIVSCGEDRT 247 (313)
T ss_dssp SEEEEEETTTCCEEEEEEC------------------------------------CSSCEEEEEECTTS-CEEEEETTSE
T ss_pred CeEEEEECCchhhhhhhhc------------------------------------CCceEEEEEEecCC-CEEEEecCCE
Confidence 8888888776655444421 35678889999998 5889999999
Q ss_pred EEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 232 LRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 232 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
|++||+++++.+..+..|...+..+ +++|+++ +++++.||.|++||+.+++......
T Consensus 248 v~iwd~~~~~~~~~~~~~~~~i~~~--~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 248 VRIWSKENGSLKQVITLPAISIWSV--DCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp EEEECTTTCCEEEEEECSSSCEEEE--EECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred EEEEECCCCceeEEEeccCceEEEE--EEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 9999999999999999999888888 8999997 6678999999999999887765554
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=235.87 Aligned_cols=241 Identities=17% Similarity=0.304 Sum_probs=195.7
Q ss_pred eeeeEE--eeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 4 TCVQTI--DCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 4 ~~~~~l--~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
++++.+ .+|...|++++|+|++++|++|+.||+|++||+++++.+..+.+|...+.++.+ ++..+++++.++.+++
T Consensus 56 ~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~ 133 (318)
T 4ggc_A 56 DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHH 133 (318)
T ss_dssp CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEe
Confidence 455555 467788999999999999999999999999999999999999999998877655 5679999999999999
Q ss_pred EECCCC-ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCc------------CeEEeecCC-Cc---e
Q psy17863 82 WEVTTG-QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH------------PIQCCLDSK-DS---Q 144 (341)
Q Consensus 82 w~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------------~~~~~~~~~-~~---~ 144 (341)
|+.... ..+..+.+|...+..+.+.++++++++++.|+.|++||+++++.. .+......+ +. .
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 213 (318)
T 4ggc_A 134 HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 213 (318)
T ss_dssp EETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEE
T ss_pred eecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEE
Confidence 998876 456677889999999999999999999999999999999875421 122222222 22 2
Q ss_pred EEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEE
Q psy17863 145 IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCIL 224 (341)
Q Consensus 145 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~ 224 (341)
+++++.++.|++||........... +...+..+.|+|+++.++
T Consensus 214 ~~~~~~~~~i~lwd~~~~~~~~~~~-------------------------------------~~~~v~~~~~~~~~~~~~ 256 (318)
T 4ggc_A 214 TGGGTSDRHIRIWNVCSGACLSAVD-------------------------------------AHSQVCSILWSPHYKELI 256 (318)
T ss_dssp EEECTTTCEEEEEETTTCCEEEEEE-------------------------------------CSSCEEEEEEETTTTEEE
T ss_pred EEecCCCCEEEEEeccccccccccc-------------------------------------ceeeeeeeeecccccceE
Confidence 3456677788888876654433221 245577778888877776
Q ss_pred Eee--cCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCC
Q psy17863 225 TCS--TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS 285 (341)
Q Consensus 225 ~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (341)
+++ .|+.|++||+++++++.++.+|...|.++ +|+|++++|++|+.||+|+|||+.+..
T Consensus 257 ~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l--~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 257 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSL--TMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEECTTTCCEEEEETTTCCEEEEECCCSSCEEEE--EECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEE--EEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 644 79999999999999999999999999988 899999999999999999999987654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=235.51 Aligned_cols=209 Identities=17% Similarity=0.240 Sum_probs=173.3
Q ss_pred eeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC--CceeeeecccCccEEEEEEcC--CCcEEEEecCCCeEEE
Q psy17863 48 LKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT--GQPVRRWREHASKVTCVKFNE--DSSVVISGSQDNTVMM 123 (341)
Q Consensus 48 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i 123 (341)
+..+.+|...|.+++|+|++++|++|+.|++|++||+.. .+.+..+.+|.++|.+++|++ ++++|++++.|++|++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 345778999999999999999999999999999999975 367788999999999999986 4889999999999999
Q ss_pred EEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcc
Q psy17863 124 WDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 203 (341)
Q Consensus 124 wd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 203 (341)
||++++..... ..+
T Consensus 82 Wd~~~~~~~~~-------------------------------~~~----------------------------------- 95 (297)
T 2pm7_B 82 WKEENGRWSQI-------------------------------AVH----------------------------------- 95 (297)
T ss_dssp EEBSSSCBCCC-------------------------------EEE-----------------------------------
T ss_pred EEcCCCceEEE-------------------------------EEe-----------------------------------
Confidence 99875431000 000
Q ss_pred cccCCCCeEEEEEccC--CCEEEEeecCCeEEEEeccccc--eeeeecCcccceeEEEEEeCCC-------------CCE
Q psy17863 204 EDYGQEPIVDACFTRD--CQCILTCSTDECLRLFDKATGE--LLEEYKGHKSGDFRIECCLDSK-------------DSQ 266 (341)
Q Consensus 204 ~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 266 (341)
..|...|.+++|+|+ +.+|++++.|+.|++||++++. ....+.+|...+..+ +|+|+ +++
T Consensus 96 -~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~--~~~p~~~~~~~~~~~~~~~~~ 172 (297)
T 2pm7_B 96 -AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSA--SWAPATIEEDGEHNGTKESRK 172 (297)
T ss_dssp -CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEE--EECCCC------------CCE
T ss_pred -ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceE--eecCCcccccccCCCCCCcce
Confidence 013456888888887 7899999999999999998763 245678899988888 77776 579
Q ss_pred EEEecCCCcEEEEeeeCCC----ceEEEEeeeeccceEEEEEcCCC---cEEEEeC-CCcEEEEEcccc
Q psy17863 267 IFCGSSDGKIYKWQLVDSS----QISTLIHSVGKAVVNSLCSHPTR---KHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 267 l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~-d~~i~vw~~~~~ 327 (341)
|++|+.|+.|++||+++++ ....+. +|...|.+++|+|++ .+|++++ |++|++|+++..
T Consensus 173 l~sgs~D~~v~lwd~~~~~~~~~~~~~l~--~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 173 FVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp EEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred EEEEcCCCcEEEEEEcCCCceEEEEEEec--CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 9999999999999999876 344555 799999999999994 8999999 999999998764
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-35 Score=248.90 Aligned_cols=252 Identities=20% Similarity=0.379 Sum_probs=195.7
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
.+++.++.+|.+.|++++| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +.++++++.||.|++|
T Consensus 163 ~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vw 238 (435)
T 1p22_A 163 LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVW 238 (435)
T ss_dssp CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEE
T ss_pred CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEE
Confidence 4567889999999999999 78899999999999999999999999999999999999997 4599999999999999
Q ss_pred ECCCCcee---eeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------cCeEEeecCCCceEEEeecc
Q psy17863 83 EVTTGQPV---RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HPIQCCLDSKDSQIFCGSSD 151 (341)
Q Consensus 83 ~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 151 (341)
|+.+++.. ..+.+|...|.+++| +++++++++.||.|++||+++++. ..+.++.. .+..+++++.|
T Consensus 239 d~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~g~~d 315 (435)
T 1p22_A 239 DMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY-RDRLVVSGSSD 315 (435)
T ss_dssp ECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE-ETTEEEEEETT
T ss_pred eCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe-CCCEEEEEeCC
Confidence 99988765 667889999999999 678999999999999999987642 22333333 45688899999
Q ss_pred CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCe
Q psy17863 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDEC 231 (341)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 231 (341)
|.|++||+++++.+..+.. |...+.++++ +++++++|+.||.
T Consensus 316 g~i~iwd~~~~~~~~~~~~------------------------------------h~~~v~~~~~--~~~~l~sg~~dg~ 357 (435)
T 1p22_A 316 NTIRLWDIECGACLRVLEG------------------------------------HEELVRCIRF--DNKRIVSGAYDGK 357 (435)
T ss_dssp SCEEEEETTTCCEEEEECC------------------------------------CSSCEEEEEC--CSSEEEEEETTSC
T ss_pred CeEEEEECCCCCEEEEEeC------------------------------------CcCcEEEEEe--cCCEEEEEeCCCc
Confidence 9999999888765554432 3456777777 7788999999999
Q ss_pred EEEEeccccc---------eeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEE
Q psy17863 232 LRLFDKATGE---------LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 302 (341)
Q Consensus 232 i~i~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 302 (341)
|++||+.+++ .+..+.+|...+..+ ++ ++++|++|+.||.|++||+.+........ ...+..++
T Consensus 358 i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l--~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~---~~~~~~~~ 430 (435)
T 1p22_A 358 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL--QF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP---PRSPSRTY 430 (435)
T ss_dssp EEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE--EE--CSSCEEECCSSSEEEEEC----------------------
T ss_pred EEEEECCCCCCccccccchheeeccCCCCCeEEE--Ee--CCCEEEEEeCCCEEEEEECCCCCCcccCC---CCCCccce
Confidence 9999998776 788899999999888 55 67899999999999999998876655543 33445555
Q ss_pred EEcC
Q psy17863 303 CSHP 306 (341)
Q Consensus 303 ~~~~ 306 (341)
.|.+
T Consensus 431 ~~~~ 434 (435)
T 1p22_A 431 TYIS 434 (435)
T ss_dssp ----
T ss_pred eeec
Confidence 5543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=244.62 Aligned_cols=260 Identities=12% Similarity=0.112 Sum_probs=196.1
Q ss_pred EEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECC---------CCcee
Q psy17863 20 RFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT---------TGQPV 90 (341)
Q Consensus 20 ~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~---------~~~~~ 90 (341)
.+.+++++|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +++.+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 345678899999999999999999999888886 567888899988 9999999999999765 44444
Q ss_pred eeec-ccCccEEEEEEcC--CCcEEEEecCCCeEEEEEecCCCC---------cCeEEe-ecCCCceEEEeeccCeEEEE
Q psy17863 91 RRWR-EHASKVTCVKFNE--DSSVVISGSQDNTVMMWDVKSRSH---------HPIQCC-LDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 91 ~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~---------~~~~~~-~~~~~~~~~~~~~~g~i~~~ 157 (341)
..+. .|..+|.+++|+| +++++++++.||.|++||+++++. ..+.++ ..+++..+++|+.||.|++|
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iw 197 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVY 197 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEE
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 4443 5778999999999 999999999999999999987552 122233 33344566677777777777
Q ss_pred EccCCcce-eeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEe
Q psy17863 158 QLVDSSQI-STLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFD 236 (341)
Q Consensus 158 d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 236 (341)
|+++++.. ..+.. .|..+|.+++|+|++.+|++++ ++.|++||
T Consensus 198 d~~~~~~~~~~~~~-----------------------------------~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd 241 (343)
T 3lrv_A 198 NLSSPDQASSRFPV-----------------------------------DEEAKIKEVKFADNGYWMVVEC-DQTVVCFD 241 (343)
T ss_dssp ESSCTTSCCEECCC-----------------------------------CTTSCEEEEEECTTSSEEEEEE-SSBEEEEE
T ss_pred ECCCCCCCccEEec-----------------------------------cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEE
Confidence 77776554 22211 1457899999999999999999 55999999
Q ss_pred ccccceeeeecC---cccceeEEEEEeCCCCCEEEEecC-CCcEEEEeeeCCCceEEEEeeeeccceEEEEEcC---CCc
Q psy17863 237 KATGELLEEYKG---HKSGDFRIECCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP---TRK 309 (341)
Q Consensus 237 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~ 309 (341)
+++++.+..+.. |...+....++|+|++++|++++. |+.+++|++.+....... .++..++|+| +.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 315 (343)
T 3lrv_A 242 LRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFT 315 (343)
T ss_dssp TTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCC
T ss_pred cCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccc
Confidence 998877666554 333333223589999999999988 999999999776554333 4678888998 888
Q ss_pred EEEEeC-CCcEEEEEccc
Q psy17863 310 HIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 310 ~l~~~~-d~~i~vw~~~~ 326 (341)
.+++++ |+.+.++-...
T Consensus 316 ~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 316 DMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEEEEEETTEEEEEEECS
T ss_pred eeEEEecCCceEEEEecC
Confidence 999999 99999886544
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=244.37 Aligned_cols=277 Identities=14% Similarity=0.214 Sum_probs=195.7
Q ss_pred eeCCcEEEEEEcc-CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecC---CCEEEEecCCCcEEEEECCC
Q psy17863 11 CKQGAIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD---SSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 11 ~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iw~~~~ 86 (341)
+|...|++++|+| ++++|++++.||.|++||+.+++....+. +...+.++.|+|. +.++++++.||.|++||+++
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 5999999999999 78899999999999999999999888887 7788999999984 44999999999999999999
Q ss_pred CceeeeecccCccEEEEEEcCCCc-EEEEecCCCeEEEEEecCCC------------------------CcCeEEee-cC
Q psy17863 87 GQPVRRWREHASKVTCVKFNEDSS-VVISGSQDNTVMMWDVKSRS------------------------HHPIQCCL-DS 140 (341)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~------------------------~~~~~~~~-~~ 140 (341)
++.+..+..|...|.+++|+|+++ ++++++.||.|++||++... ...+..+. .+
T Consensus 176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 999999999999999999999988 58999999999999997543 22344443 34
Q ss_pred CCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCC
Q psy17863 141 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDC 220 (341)
Q Consensus 141 ~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 220 (341)
.+..+++++.||.+++||+.+.+............ ....+........+
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~ 304 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNN-------------------------------SKKGLKFTVSCGCS 304 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCC-------------------------------CSSCCCCEECCSSS
T ss_pred CCCEEEEecCCCeEEEEECCCCccceecccccccc-------------------------------ccccceeEEecCCC
Confidence 55588899999999999998876544332211100 01111112222334
Q ss_pred CEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceE
Q psy17863 221 QCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN 300 (341)
Q Consensus 221 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 300 (341)
..+++++.++.|++||+.+++.+..+.+|...+..+ +|+|++++|++++.||.|++||+.+++++.... ... ..
T Consensus 305 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--~~~-~~- 378 (408)
T 4a11_B 305 SEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCC--VFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD--ETT-TK- 378 (408)
T ss_dssp SCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEE--EEETTTTEEEEEETTSCEEEEEECC-----------------
T ss_pred ceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEE--EEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC--ceE-ec-
Confidence 557777889999999999999999999999999888 899999999999999999999999988776654 221 11
Q ss_pred EEEEcCC-CcEEEEeC-CCcEEEEEccc
Q psy17863 301 SLCSHPT-RKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 301 ~~~~~~~-~~~l~~~~-d~~i~vw~~~~ 326 (341)
..+.|. ...+.+.+ ++.+++|+.+.
T Consensus 379 -~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 379 -SQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ----------------------------
T ss_pred -cccccccceeecccCccCceeecCCcc
Confidence 223332 33344455 99999998653
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=235.05 Aligned_cols=293 Identities=10% Similarity=0.074 Sum_probs=228.6
Q ss_pred CEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEE-EEecCCCcEEEEECCCCceeeeecccCccEEEEE
Q psy17863 26 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI-ASGASDKSVILWEVTTGQPVRRWREHASKVTCVK 104 (341)
Q Consensus 26 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~ 104 (341)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 467888999999999999999999888665 58999999999977 677789999999999999988887555 899999
Q ss_pred EcCCCcEEE-EecCCCeEEEEEecCCCC-------cCeEEeec-CCCceE-EEeeccCeEEEEEccCCcceeeeEeeecC
Q psy17863 105 FNEDSSVVI-SGSQDNTVMMWDVKSRSH-------HPIQCCLD-SKDSQI-FCGSSDGKIYKWQLVDSSQISTLIHSVGK 174 (341)
Q Consensus 105 ~~~~~~~l~-~~~~d~~i~iwd~~~~~~-------~~~~~~~~-~~~~~~-~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 174 (341)
|+|++++|+ +++.++.|++||+.+++. .....+.. +.+..+ ++++.++.|++||+.+++....+.. .
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~ 157 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV---G 157 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---C
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec---C
Confidence 999999775 555679999999987542 22333333 444455 6788899999999998877666543 2
Q ss_pred ceEEEEEECCCCceEE-EeC-CCceEEEEccccc------CCCCeEEEEEccCCCEEEEee---cCCeEEEEecccccee
Q psy17863 175 AVVNSLCSHPTRKHIM-SAC-GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCS---TDECLRLFDKATGELL 243 (341)
Q Consensus 175 ~~~~~~~~~~~~~~~~-~~~-~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~ 243 (341)
..+..++++|+++.++ ++. ++.+++||+.... +...+.+++|+|+++++++++ .++.|++||+.+++.+
T Consensus 158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~ 237 (391)
T 1l0q_A 158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT 237 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence 3468999999998874 444 4789999987644 566789999999999999888 6899999999999988
Q ss_pred eeecCcccceeEEEEEeCCCCCEE-EEecCCCcEEEEeeeCCCceEEEEeeeeccceE---EEE------------EcCC
Q psy17863 244 EEYKGHKSGDFRIECCLDSKDSQI-FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN---SLC------------SHPT 307 (341)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~---~~~------------~~~~ 307 (341)
..+..+.. +..+ +++|+++++ ++++.|+.|++||+.+++.+..+. .+..+.. .+. |+.+
T Consensus 238 ~~~~~~~~-~~~~--~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~fs~~ 312 (391)
T 1l0q_A 238 ARIPVGPD-PAGI--AVTPDGKKVYVALSFXNTVSVIDTATNTITATMA--VGKNPYASGQFIGSIPVQPVYPSADFKSN 312 (391)
T ss_dssp EEEECCSS-EEEE--EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEECCSSCEEECSSCCCCCBCCEEES
T ss_pred EEEecCCC-ccEE--EEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE--CCcCCCccceeeecccccccccccccccc
Confidence 88887654 4444 899999877 677889999999999998888776 3332211 112 2221
Q ss_pred C----------cEEEEeC-CCcEEEEEccccc
Q psy17863 308 R----------KHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 308 ~----------~~l~~~~-d~~i~vw~~~~~~ 328 (341)
. ..+...+ |...++|++.++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~ 344 (391)
T 1l0q_A 313 ITSGYIFLSEPVQFTDLSKDATEWKWDFGDGS 344 (391)
T ss_dssp CCSSEEETTCCEEEEECCBSCSEEEEECSSSC
T ss_pred cccccccccceEEEEeCCCCceEEEEECCCCc
Confidence 1 3455556 8899999997654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=249.75 Aligned_cols=246 Identities=13% Similarity=0.169 Sum_probs=192.2
Q ss_pred eeeEecCcccceeEEEEec-CCCEEEEecCCCcEEEEECCCCce--eeeecccCccEEEEEEcC-CCcEEEEecCCCeEE
Q psy17863 47 LLKTYGGHAHEVNDATAAC-DSSQIASGASDKSVILWEVTTGQP--VRRWREHASKVTCVKFNE-DSSVVISGSQDNTVM 122 (341)
Q Consensus 47 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~ 122 (341)
.......|...|++++|+| ++++||+|+.||.|+|||+.+++. ...+.+|.+.|++++|+| ++++|++++.||+|+
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 3445567888999999999 567899999999999999987754 345568999999999998 789999999999999
Q ss_pred EEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEE
Q psy17863 123 MWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWT 201 (341)
Q Consensus 123 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~ 201 (341)
+||+++.. +..+ .........+.+++++|+++++++++. +.|++||
T Consensus 191 iwd~~~~~-----------------------~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd 237 (435)
T 4e54_B 191 LQDFKGNI-----------------------LRVF----------ASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLN 237 (435)
T ss_dssp EEETTSCE-----------------------EEEE----------ECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEE
T ss_pred EeeccCCc-----------------------eeEE----------eccCCCCccEEEEEECCCCCEEEEEeCCCcEeeec
Confidence 99987532 0000 001112234677889999999988874 8999999
Q ss_pred ccccc------CCCCeEEEEEccCCC-EEEEeecCCeEEEEeccccceeee---ecCcccceeEEEEEeCCCCCEEEEec
Q psy17863 202 AEEDY------GQEPIVDACFTRDCQ-CILTCSTDECLRLFDKATGELLEE---YKGHKSGDFRIECCLDSKDSQIFCGS 271 (341)
Q Consensus 202 ~~~~~------~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~ 271 (341)
++... |...|.+++|+|++. ++++++.|+.|++||+++.+.... ..+|...|..+ +|+|++++|++++
T Consensus 238 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~--~~spdg~~l~s~~ 315 (435)
T 4e54_B 238 MDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAA--CFSPDGARLLTTD 315 (435)
T ss_dssp SSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEEC--CBCTTSSEEEEEE
T ss_pred cCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccce--eECCCCCeeEEEc
Confidence 87543 778999999999876 678999999999999987765443 35788888887 8999999999999
Q ss_pred CCCcEEEEeeeCCCceEEEEeeeecc------ceEEEEEcCCCcEEEEeC-------------CCcEEEEEcccccC
Q psy17863 272 SDGKIYKWQLVDSSQISTLIHSVGKA------VVNSLCSHPTRKHIMSAC-------------GNNVKLWTAEEDYG 329 (341)
Q Consensus 272 ~dg~i~iwd~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~-------------d~~i~vw~~~~~~~ 329 (341)
.||.|++||+.+++....+. .|.. .+....|+|++.+++++. ++.|++|+..++..
T Consensus 316 ~D~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~ 390 (435)
T 4e54_B 316 QKSEIRVYSASQWDCPLGLI--PHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM 390 (435)
T ss_dssp SSSCEEEEESSSSSSEEEEC--CCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE
T ss_pred CCCEEEEEECCCCccceEEe--cccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE
Confidence 99999999999998877765 3321 233456777776666653 34799999887643
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=223.67 Aligned_cols=282 Identities=13% Similarity=0.069 Sum_probs=181.3
Q ss_pred ceeeeEEeeeCC----cEEEEEEccCCC---EEEEEeCCCeEEEEcCCCc---ceeeEecCccccee-------------
Q psy17863 3 YTCVQTIDCKQG----AIRAVRFNVDGS---YCLTCGSDKKIKLWNPYRN---LLLKTYGGHAHEVN------------- 59 (341)
Q Consensus 3 ~~~~~~l~~h~~----~v~~~~~~~~~~---~l~t~~~dg~i~iw~~~~~---~~~~~~~~~~~~v~------------- 59 (341)
.+++.+|+...+ .+.++-|-..|- .+++++ ...|++|+..++ ++++++..|..+|.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 103 (356)
T 2w18_A 25 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVC 103 (356)
T ss_dssp EEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEE
T ss_pred eeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceee
Confidence 456667776554 355666655443 567777 568999999888 77888877775554
Q ss_pred ------------EEEEecC----CCEEEEecCCCcEEEEECCCCceeee-ecccCccEEEEEEcCCCcEEEEecCCCeEE
Q psy17863 60 ------------DATAACD----SSQIASGASDKSVILWEVTTGQPVRR-WREHASKVTCVKFNEDSSVVISGSQDNTVM 122 (341)
Q Consensus 60 ------------~~~~~~~----~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 122 (341)
.++++|| ++.+++++. .+.+|++.+++.+.. ..+|...|..++++|+|+.+.+..
T Consensus 104 ~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~------ 175 (356)
T 2w18_A 104 VALGNLEIREIRALFCSSDDESEKQVLLKSGN--IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF------ 175 (356)
T ss_dssp EEECSSSEEEEEEECC------CCEEEEEEEE--EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE------
T ss_pred eeeccccccceEEEEECCCccccccEEEeCCC--eEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeec------
Confidence 4455555 555555542 255566655555554 345666666666666555544211
Q ss_pred EEEecCCCCcCeEEee-cCCCceEEEeeccCeEEEEEccCCcceeeeEeee-cCceEEEEEECCCCceEEEeCCCceEEE
Q psy17863 123 MWDVKSRSHHPIQCCL-DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV-GKAVVNSLCSHPTRKHIMSACGNNVKLW 200 (341)
Q Consensus 123 iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 200 (341)
........+.... ...+..+++++.|++|++||+.+++.+..+..+. ....+.+++|+|+++.+++.....
T Consensus 176 ---~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~---- 248 (356)
T 2w18_A 176 ---LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPC---- 248 (356)
T ss_dssp ---ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-------
T ss_pred ---cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCC----
Confidence 0001111111111 2245689999999999999999999888886332 234567778888888776654210
Q ss_pred EcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeee-----cCcccceeEEEEEeCCCCCEEEEecCCCc
Q psy17863 201 TAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY-----KGHKSGDFRIECCLDSKDSQIFCGSSDGK 275 (341)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 275 (341)
....+++|+.|++|++||..+++.+..+ .+|....... .+ ++.++++|+.|++
T Consensus 249 ------------------~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg--~~--sg~~lASgS~DgT 306 (356)
T 2w18_A 249 ------------------AKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG--DV--KDHCAAAILTSGT 306 (356)
T ss_dssp ---------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE--EE--ETTEEEEEETTSC
T ss_pred ------------------CcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc--cc--CCCEEEEEcCCCc
Confidence 0113788999999999999999887665 3565543222 33 3778999999999
Q ss_pred EEEEeeeCCCceEEEEeeeeccceE-EEEEcCCCcEEEEeC-CCcEEEEEc
Q psy17863 276 IYKWQLVDSSQISTLIHSVGKAVVN-SLCSHPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~-d~~i~vw~~ 324 (341)
|+|||+.+++++.++. +|...+. .++|+|||++|++|+ |++|+||++
T Consensus 307 IkIWDl~tGk~l~tL~--gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 307 IAIWDLLLGQCTALLP--PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEETTTCSEEEEEC--CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEEECCCCcEEEEec--CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999998 7776554 689999999999999 999999985
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=237.04 Aligned_cols=241 Identities=13% Similarity=0.164 Sum_probs=198.7
Q ss_pred EecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCc---eeeeecccCccEEEEEEcCCCc-EEEEecCCCeEEEEE
Q psy17863 50 TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ---PVRRWREHASKVTCVKFNEDSS-VVISGSQDNTVMMWD 125 (341)
Q Consensus 50 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd 125 (341)
...+|.+.|++++|+|++++|++++.||.|++|++.+++ ....+..|...|.+++|+|+++ +|++++.||.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 345799999999999999999999999999999998877 3455568999999999999999 999999999999999
Q ss_pred e-cCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEcc
Q psy17863 126 V-KSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 203 (341)
Q Consensus 126 ~-~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 203 (341)
+ .++.. ..+....+...+.+++|+| +..+++++ ++.+++|++.
T Consensus 86 ~~~~~~~----------------------------------~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~ 130 (342)
T 1yfq_A 86 LIGSPSF----------------------------------QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPR 130 (342)
T ss_dssp SSSSSSE----------------------------------EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHH
T ss_pred eccCCce----------------------------------EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccc
Confidence 8 65431 0111101445688999999 76666655 5889999987
Q ss_pred c---------cc------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccc-cce--eeeecCcccceeEEEEEeCC-CC
Q psy17863 204 E---------DY------GQEPIVDACFTRDCQCILTCSTDECLRLFDKAT-GEL--LEEYKGHKSGDFRIECCLDS-KD 264 (341)
Q Consensus 204 ~---------~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~-~~ 264 (341)
. .. +...+.+++|+|++ +++++.|+.|++||+++ +.. ......|...+..+ +++| ++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i--~~~~~~~ 206 (342)
T 1yfq_A 131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV--ALLPKEQ 206 (342)
T ss_dssp HHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEE--EECSGGG
T ss_pred ccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEE--EECCCCC
Confidence 6 33 67789999999988 99999999999999987 543 33445677777777 8999 99
Q ss_pred CEEEEecCCCcEEEEeeeCC------CceEEEEeeeecc---------ceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 265 SQIFCGSSDGKIYKWQLVDS------SQISTLIHSVGKA---------VVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 265 ~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
+++++++.||.|++|++... +....+. .|.. .|.+++|+|++++|++++ ||.|++|++.++.
T Consensus 207 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR--CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE--CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred CEEEEEecCCcEEEEEEcCCCcccccccceeee--cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence 99999999999999999887 7777777 5544 999999999999999999 9999999998765
Q ss_pred CCc
Q psy17863 329 GQA 331 (341)
Q Consensus 329 ~~~ 331 (341)
...
T Consensus 285 ~~~ 287 (342)
T 1yfq_A 285 KIK 287 (342)
T ss_dssp EEE
T ss_pred Hhh
Confidence 433
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=238.15 Aligned_cols=309 Identities=11% Similarity=0.100 Sum_probs=241.5
Q ss_pred EEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEEC--CCCceeeeecccC
Q psy17863 20 RFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV--TTGQPVRRWREHA 97 (341)
Q Consensus 20 ~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~--~~~~~~~~~~~~~ 97 (341)
+|+|++.++++++.|++|.+||..+++.+.++..+.. +..++|+||+++|++++.|+.|.+||+ .+++.+..+. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 4889999999999999999999999999999984433 889999999999999999999999999 8888888887 45
Q ss_pred ccEEEEEEcC----CCcEEEEecC-CCeEEEEEecCCCCc-------------------CeEEee-cCCC-ceEEEeecc
Q psy17863 98 SKVTCVKFNE----DSSVVISGSQ-DNTVMMWDVKSRSHH-------------------PIQCCL-DSKD-SQIFCGSSD 151 (341)
Q Consensus 98 ~~v~~~~~~~----~~~~l~~~~~-d~~i~iwd~~~~~~~-------------------~~~~~~-~~~~-~~~~~~~~~ 151 (341)
..+..++|+| +++++++++. +++|.+||..+.+.. ....+. .+.+ ..+++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 6679999999 9999999885 899999998765421 111222 2222 356677788
Q ss_pred CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc-----------CCCCeEEEEEcc
Q psy17863 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY-----------GQEPIVDACFTR 218 (341)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~-----------~~~~i~~~~~~~ 218 (341)
++|.+||..+.+.+...... ....+..+.|+|++++++++. ++.|.+||..+.. |......+ ++|
T Consensus 302 g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p 379 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP 379 (543)
T ss_dssp TEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET
T ss_pred CeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC
Confidence 99999999887655422222 344577899999999876654 4899999987643 22222333 467
Q ss_pred C-CCEEEEee-cCCeEEEEeccc-------cceeeeecCcccceeEEEEEeCCCCCEEEEec-------CCCcEEEEeee
Q psy17863 219 D-CQCILTCS-TDECLRLFDKAT-------GELLEEYKGHKSGDFRIECCLDSKDSQIFCGS-------SDGKIYKWQLV 282 (341)
Q Consensus 219 ~-~~~l~~~~-~d~~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~dg~i~iwd~~ 282 (341)
+ +..++++. .|++|.+||..+ ++.++++.+|...+..+ .++|++++|++++ .+++|.+||+.
T Consensus 380 ~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v--~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~ 457 (543)
T 1nir_A 380 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI--KTHPKSSHLYVDTTFNPDARISQSVAVFDLK 457 (543)
T ss_dssp TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCE--ECCTTCCEEEECCTTCSSHHHHTCEEEEETT
T ss_pred CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEE--EcCCCCCcEEEecCCCCCcccCceEEEEECC
Confidence 7 66666665 579999999988 88999999988776666 8999999999987 27799999999
Q ss_pred CCCce-EEEEe------eeeccceEEEEEcCCCcEEEEe-----C-CCcEEEEEcccccCCccce
Q psy17863 283 DSSQI-STLIH------SVGKAVVNSLCSHPTRKHIMSA-----C-GNNVKLWTAEEDYGQAGLS 334 (341)
Q Consensus 283 ~~~~~-~~~~~------~~~~~~v~~~~~~~~~~~l~~~-----~-d~~i~vw~~~~~~~~~~~~ 334 (341)
+++.. ..+.. ..+...+..+.|+|+|+.|+++ + |+.|.|||..+....+.+.
T Consensus 458 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 458 NLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp CTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 99887 44421 1346789999999999998865 3 6899999999887666554
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=230.56 Aligned_cols=245 Identities=12% Similarity=0.076 Sum_probs=177.1
Q ss_pred EEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEE-EEecC
Q psy17863 39 LWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVV-ISGSQ 117 (341)
Q Consensus 39 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~ 117 (341)
+|++.+.+.+..+..|...|.+++|+||+++|++|+.++ +++|++++++....... ..+..+++.++++.+ ++++.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV 79 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC
Confidence 566667777777889999999999999999999998776 78999987766554432 247778888877766 45666
Q ss_pred CCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCce
Q psy17863 118 DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNV 197 (341)
Q Consensus 118 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 197 (341)
|+.|++||+.+++ .+..+. ....+.++.++++. ++++.++.+
T Consensus 80 d~~v~iWd~~~~~---------------------------------~~~~~~---~~~~v~~v~~~~~~--~~~~~~~~i 121 (355)
T 3vu4_A 80 KEVVHIWDDVKKQ---------------------------------DVSRIK---VDAPVKDLFLSREF--IVVSYGDVI 121 (355)
T ss_dssp TTEEEEEETTTTE---------------------------------EEEEEE---CSSCEEEEEECSSE--EEEEETTEE
T ss_pred ccEEEEEECCCCc---------------------------------EEEEEE---CCCceEEEEEcCCE--EEEEEcCEE
Confidence 7788888776543 222222 22357778887654 444567888
Q ss_pred EEEEcccc-cC----CCCeEEEEEccCCCEEEE--eecCCeEEEEeccccc----------------eeeeecCccccee
Q psy17863 198 KLWTAEED-YG----QEPIVDACFTRDCQCILT--CSTDECLRLFDKATGE----------------LLEEYKGHKSGDF 254 (341)
Q Consensus 198 ~~~~~~~~-~~----~~~i~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~----------------~~~~~~~~~~~~~ 254 (341)
++|++... .. ..+...+++++ .++++ |+.||.|++||+.+++ .+..+.+|...|.
T Consensus 122 ~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~ 199 (355)
T 3vu4_A 122 SVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK 199 (355)
T ss_dssp EEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEE
T ss_pred EEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceE
Confidence 89988765 21 11344566777 55555 6899999999998765 2778899999999
Q ss_pred EEEEEeCCCCCEEEEecCCCc-EEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 255 RIECCLDSKDSQIFCGSSDGK-IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
++ +|+|++++|++|+.||+ |++||+.+++++..+....|...|.+++|+|++++|++++ |+.|++|++....
T Consensus 200 ~~--~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 200 MV--RLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EE--EECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EE--EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 88 89999999999999998 9999999999998887323889999999999999999999 9999999997653
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-34 Score=230.66 Aligned_cols=228 Identities=15% Similarity=0.207 Sum_probs=170.8
Q ss_pred eeeEEeeeCCcEEEEEEcc--CCCEEEEEeCCCeEEEEcCCCc--ceeeEecCcccceeEEEEecC--CCEEEEecCCCc
Q psy17863 5 CVQTIDCKQGAIRAVRFNV--DGSYCLTCGSDKKIKLWNPYRN--LLLKTYGGHAHEVNDATAACD--SSQIASGASDKS 78 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~--~~~~l~t~~~dg~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~ 78 (341)
++.++++|.++|++++|+| ++++|++|+.|++|++||+.++ +....+.+|...|.+++|+|+ +.+|++++.|++
T Consensus 49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~ 128 (316)
T 3bg1_A 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128 (316)
T ss_dssp EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence 5678999999999999986 4899999999999999999876 356678899999999999997 789999999999
Q ss_pred EEEEECCCCce---eeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEE
Q psy17863 79 VILWEVTTGQP---VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIY 155 (341)
Q Consensus 79 i~iw~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 155 (341)
|++||+..+.. ...+.+|...|.+++|+|+... +.+ .+...+. .......+++++.|+.|+
T Consensus 129 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-------~~~--~~~~~~~-------~~~~~~~l~sgs~D~~v~ 192 (316)
T 3bg1_A 129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP-------GSL--IDHPSGQ-------KPNYIKRFASGGCDNLIK 192 (316)
T ss_dssp EEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---------------CCSC-------CCCCCCBEECCBTTSBCC
T ss_pred EEEEecCCCCCcceeeeeccccCCcceEEEccccCC-------ccc--ccccccc-------CccccceEEEecCCCeEE
Confidence 99999987632 4556789999999999997420 000 0000000 011234677777777788
Q ss_pred EEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCC----CEEEEeecCCe
Q psy17863 156 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDC----QCILTCSTDEC 231 (341)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~d~~ 231 (341)
+||++........... ..|...|.+++|+|++ ++|++++.|++
T Consensus 193 lWd~~~~~~~~~~~~l---------------------------------~~h~~~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 193 LWKEEEDGQWKEEQKL---------------------------------EAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp EEEECTTSCEEEEECC---------------------------------BCCSSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred EEEeCCCCccceeeec---------------------------------ccCCCceEEEEecCCCCCCCceEEEEcCCCe
Confidence 8877543211111000 1145678888888876 78999999999
Q ss_pred EEEEeccccc----eeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 232 LRLFDKATGE----LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 232 i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
|++|++.+.. ....+..|...+..+ +|+|++++|++++.||.|++|+...
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~~~~v~~v--~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKFNDVVWHV--SWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEECSSCEEEE--EECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEEccCccccchhhhhhhcCCCcEEEE--EEcCCCCEEEEEcCCCeEEEEEECC
Confidence 9999987631 234456678888877 8999999999999999999999753
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=229.67 Aligned_cols=215 Identities=16% Similarity=0.230 Sum_probs=176.1
Q ss_pred ceeeeEEeeeCCcEEEEEEccC--CCEEEEEeCCCeEEEEcCCCcc--eeeEecCcccceeEEEEecC--CCEEEEecCC
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVD--GSYCLTCGSDKKIKLWNPYRNL--LLKTYGGHAHEVNDATAACD--SSQIASGASD 76 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~--~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d 76 (341)
.++++.+.+|.+.|++++|+|+ +++|++++.||.|++||+.+++ .+..+..|...|.+++|+|+ +++|++++.|
T Consensus 45 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 124 (379)
T 3jrp_A 45 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124 (379)
T ss_dssp EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence 3567789999999999999987 9999999999999999999886 77788889999999999999 9999999999
Q ss_pred CcEEEEECCCCc--eeeeecccCccEEEEEEcC-------------CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCC
Q psy17863 77 KSVILWEVTTGQ--PVRRWREHASKVTCVKFNE-------------DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSK 141 (341)
Q Consensus 77 g~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 141 (341)
+.|++||+.++. ....+..|...|.+++|+| ++.++++++.|+.|++||++....
T Consensus 125 ~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------- 194 (379)
T 3jrp_A 125 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ---------- 194 (379)
T ss_dssp SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT----------
T ss_pred CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc----------
Confidence 999999998874 3445678999999999999 578888888888888888765431
Q ss_pred CceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC--
Q psy17863 142 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD-- 219 (341)
Q Consensus 142 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-- 219 (341)
....... -..|..+|.+++|+|+
T Consensus 195 -----------------------~~~~~~~--------------------------------~~~h~~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 195 -----------------------TYVLEST--------------------------------LEGHSDWVRDVAWSPTVL 219 (379)
T ss_dssp -----------------------EEEEEEE--------------------------------ECCCSSCEEEEEECCCCS
T ss_pred -----------------------ceeeEEE--------------------------------EecccCcEeEEEECCCCC
Confidence 1000000 0113567888999999
Q ss_pred -CCEEEEeecCCeEEEEeccccc-----eeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCC
Q psy17863 220 -CQCILTCSTDECLRLFDKATGE-----LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS 284 (341)
Q Consensus 220 -~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 284 (341)
+++|++++.||.|++||++++. .+.....|...+..+ +|+|++++|++++.||.|++|++...
T Consensus 220 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 220 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA--SWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEE--EECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEE--EEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 8999999999999999998764 222334477777777 89999999999999999999999844
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=226.44 Aligned_cols=253 Identities=15% Similarity=0.226 Sum_probs=188.2
Q ss_pred eeeeEEeeeCCcEEEEEEcc--CCCEEEEEeCCCeEEEEcCCCc---------ceeeEecCcccceeEEEEecC--CCEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNV--DGSYCLTCGSDKKIKLWNPYRN---------LLLKTYGGHAHEVNDATAACD--SSQI 70 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~--~~~~l~t~~~dg~i~iw~~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l 70 (341)
++...+.+|...|++++|+| ++++|++++.||.|++||+.++ +.+..+..|...|.+++|+|+ +++|
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 127 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence 57788899999999999999 6999999999999999999876 557788899999999999999 9999
Q ss_pred EEecCCCcEEEEECCCCceeeeec-------------ccCccEEEEEEcCC---CcEEEEecCCCeEEEEEecCCCCcCe
Q psy17863 71 ASGASDKSVILWEVTTGQPVRRWR-------------EHASKVTCVKFNED---SSVVISGSQDNTVMMWDVKSRSHHPI 134 (341)
Q Consensus 71 ~~~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~ 134 (341)
++++.||.|++||+.+++.+..+. .|...+.+++|+|+ +.++++++.++.+.+|+.....
T Consensus 128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~---- 203 (351)
T 3f3f_A 128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK---- 203 (351)
T ss_dssp EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC----
T ss_pred EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc----
Confidence 999999999999999887665443 57788999999997 8899999988888666655432
Q ss_pred EEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCC----ceEEEeC-CCceEEEEcccccC--
Q psy17863 135 QCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR----KHIMSAC-GNNVKLWTAEEDYG-- 207 (341)
Q Consensus 135 ~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~i~~~~~~~~~~-- 207 (341)
.........+...+.+++|+|++ +++++++ ++.|++||+.....
T Consensus 204 -----------------------------~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 254 (351)
T 3f3f_A 204 -----------------------------LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPL 254 (351)
T ss_dssp -----------------------------EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---
T ss_pred -----------------------------eeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcc
Confidence 11111112245678999999998 6676665 58899999887531
Q ss_pred -----CCCeEEEEEccCCCEEE----EeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEE
Q psy17863 208 -----QEPIVDACFTRDCQCIL----TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYK 278 (341)
Q Consensus 208 -----~~~i~~~~~~~~~~~l~----~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 278 (341)
.........++....+. .+.....+.+|+....+.+..+.+|...+..+ +|+|++++|++++.||.|++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~s~~~~~l~s~~~dg~v~i 332 (351)
T 3f3f_A 255 ASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSV--SWNLTGTILSSAGDDGKVRL 332 (351)
T ss_dssp ------------------------------------CCSEEEEEEEEECTTSSCEEEE--EECSSSCCEEEEETTSCEEE
T ss_pred ccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEE--EEcCCCCEEEEecCCCcEEE
Confidence 11222222333333222 23345567778877888899999999999888 89999999999999999999
Q ss_pred EeeeCCCceEEEE
Q psy17863 279 WQLVDSSQISTLI 291 (341)
Q Consensus 279 wd~~~~~~~~~~~ 291 (341)
|++.+++.+..+.
T Consensus 333 w~~~~~~~~~~~~ 345 (351)
T 3f3f_A 333 WKATYSNEFKCMS 345 (351)
T ss_dssp EEECTTSCEEEEE
T ss_pred EecCcCcchhhee
Confidence 9999988776665
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-34 Score=234.14 Aligned_cols=234 Identities=8% Similarity=0.084 Sum_probs=191.1
Q ss_pred EEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCC
Q psy17863 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSK 141 (341)
Q Consensus 62 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 141 (341)
.+.++++++++|+.||+|++||+.+++.+..+. ...|.++.|+|+ +++++.|+.|++|+...
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~------------- 104 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN------------- 104 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT-------------
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC-------------
Confidence 344578899999999999999999999888776 466788888887 99999999999999763
Q ss_pred CceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECC--CCceEEEeC-CCceEEEEccccc--------CCCC
Q psy17863 142 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP--TRKHIMSAC-GNNVKLWTAEEDY--------GQEP 210 (341)
Q Consensus 142 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~i~~~~~~~~~--------~~~~ 210 (341)
.+.+|+..+.+.+...... +...+.+++++| +++++++++ ++.+++||+.... +...
T Consensus 105 -----------~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~ 172 (343)
T 3lrv_A 105 -----------QITILDSKTNKVLREIEVD-SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVE 172 (343)
T ss_dssp -----------EEEEEETTTCCEEEEEECC-CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCC
T ss_pred -----------ceEEeecCCcceeEEeecC-CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCc
Confidence 5778888887766555432 345799999999 999998766 6899999987643 4457
Q ss_pred eEEEEEccCCCEEEEeecCCeEEEEecccccee-eeecC-cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceE
Q psy17863 211 IVDACFTRDCQCILTCSTDECLRLFDKATGELL-EEYKG-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 288 (341)
Q Consensus 211 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 288 (341)
+.+++|+|++.+|++|+.||.|++||+++++.+ ..+.. |..++..+ +|+|++.+|++++ |+.|++||+++++.+.
T Consensus 173 i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l--~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~ 249 (343)
T 3lrv_A 173 YSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEV--KFADNGYWMVVEC-DQTVVCFDLRKDVGTL 249 (343)
T ss_dssp CCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEE--EECTTSSEEEEEE-SSBEEEEETTSSTTCB
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEE--EEeCCCCEEEEEe-CCeEEEEEcCCCCcce
Confidence 999999999999999999999999999999887 78888 99999888 8999999999999 5599999999987765
Q ss_pred EEEe-eeeccce--EEEEEcCCCcEEEEeC--CCcEEEEEccccc
Q psy17863 289 TLIH-SVGKAVV--NSLCSHPTRKHIMSAC--GNNVKLWTAEEDY 328 (341)
Q Consensus 289 ~~~~-~~~~~~v--~~~~~~~~~~~l~~~~--d~~i~vw~~~~~~ 328 (341)
.+.. ..|...+ .+++|+|++++|++++ |+.|++|++++..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 250 AYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp SSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred eecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 5441 0133333 4699999999999965 8999999987654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=226.33 Aligned_cols=253 Identities=17% Similarity=0.220 Sum_probs=194.6
Q ss_pred EEEcCCCcceeeEecCcccceeEEEEecC---CCEEEEecCCCcEEEEECCC-Ccee-eeecccCccEEEEEEcCCCcEE
Q psy17863 38 KLWNPYRNLLLKTYGGHAHEVNDATAACD---SSQIASGASDKSVILWEVTT-GQPV-RRWREHASKVTCVKFNEDSSVV 112 (341)
Q Consensus 38 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l 112 (341)
..|+....+.+..+.+|.+.|++++|+|+ +++|++++.||.|++||+.+ ++.+ ..+.+|...|.+++|+|++++|
T Consensus 22 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 101 (368)
T 3mmy_A 22 TTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101 (368)
T ss_dssp -CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred ccCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEE
Confidence 34556667778888999999999999999 59999999999999999987 5554 7788899999999999999999
Q ss_pred EEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEE--CCCCceEE
Q psy17863 113 ISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS--HPTRKHIM 190 (341)
Q Consensus 113 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 190 (341)
++++.||.|++||+++++. .. ...+...+.+++| +|++.+++
T Consensus 102 ~s~~~dg~v~iwd~~~~~~---------------------------------~~---~~~~~~~v~~~~~~~~~~~~~l~ 145 (368)
T 3mmy_A 102 FTASCDKTAKMWDLSSNQA---------------------------------IQ---IAQHDAPVKTIHWIKAPNYSCVM 145 (368)
T ss_dssp EEEETTSEEEEEETTTTEE---------------------------------EE---EEECSSCEEEEEEEECSSCEEEE
T ss_pred EEEcCCCcEEEEEcCCCCc---------------------------------ee---eccccCceEEEEEEeCCCCCEEE
Confidence 9999999999999876430 00 1124566899999 88988777
Q ss_pred EeC-CCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeee--cCcccceeEEEEEeC
Q psy17863 191 SAC-GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY--KGHKSGDFRIECCLD 261 (341)
Q Consensus 191 ~~~-~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~ 261 (341)
+++ ++.+++||+.... ....+.++.+. ...+++++.++.+++|+++........ ..+......+.+...
T Consensus 146 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (368)
T 3mmy_A 146 TGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKD 223 (368)
T ss_dssp EEETTSEEEEECSSCSSCSEEEECSSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEEC
T ss_pred EccCCCcEEEEECCCCcEEEEEecCCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEccc
Confidence 766 6899999987654 33445555555 457888999999999999866432222 122333444433433
Q ss_pred CCC--CEEEEecCCCcEEEEeeeCC---CceEEEEeeeecc------------ceEEEEEcCCCcEEEEeC-CCcEEEEE
Q psy17863 262 SKD--SQIFCGSSDGKIYKWQLVDS---SQISTLIHSVGKA------------VVNSLCSHPTRKHIMSAC-GNNVKLWT 323 (341)
Q Consensus 262 ~~~--~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~-d~~i~vw~ 323 (341)
+.. ..+++++.||.|++|++... +.+..+. .|.. +|++++|+|++++|++++ ||.|++|+
T Consensus 224 ~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd 301 (368)
T 3mmy_A 224 KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFK--CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWD 301 (368)
T ss_dssp TTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEE--CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred CCCCCCeEEEecCCCcEEEEecCCCCccccceeee--eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEE
Confidence 332 23999999999999999887 4566666 5554 799999999999999999 99999999
Q ss_pred cccccCC
Q psy17863 324 AEEDYGQ 330 (341)
Q Consensus 324 ~~~~~~~ 330 (341)
+.++...
T Consensus 302 ~~~~~~~ 308 (368)
T 3mmy_A 302 KDARTKL 308 (368)
T ss_dssp TTTTEEE
T ss_pred CCCCcEE
Confidence 9876443
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=236.52 Aligned_cols=248 Identities=10% Similarity=0.067 Sum_probs=196.8
Q ss_pred CcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--
Q psy17863 53 GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-- 130 (341)
Q Consensus 53 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-- 130 (341)
.....|.+++|+|||+++|+++.|++|+ |...+ +.+++|...|.+++|+|+| .++.+.+|+.+...
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~~ 80 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQNGLL 80 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCSS
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEeCCCceEe
Confidence 4557899999999999999999999999 65444 4457899999999999998 56777777654221
Q ss_pred ----CcCeEEe-ecCCCceEEEeeccCeEEEEEccCCcceeeeEeeec---CceEEEEEECCCCceEEEeC-CCceEEEE
Q psy17863 131 ----HHPIQCC-LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG---KAVVNSLCSHPTRKHIMSAC-GNNVKLWT 201 (341)
Q Consensus 131 ----~~~~~~~-~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~i~~~~ 201 (341)
...+..+ ..+++..+++++.||.+++||... .+..+. +.. ...+.+++|+|+|+++++++ ++.|++|+
T Consensus 81 ~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 81 NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFS 157 (588)
T ss_dssp TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEE
T ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEE
Confidence 2334444 445556799999999999999544 333332 111 23599999999999999988 59999999
Q ss_pred ccccc------------------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccce---eeee-cCcccceeEEEEE
Q psy17863 202 AEEDY------------------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL---LEEY-KGHKSGDFRIECC 259 (341)
Q Consensus 202 ~~~~~------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~-~~~~~~~~~~~~~ 259 (341)
+..+. |...|.+++|+|+| +++++.|+.+++||+..++. .+++ .+|...|..+ +
T Consensus 158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sv--a 233 (588)
T 2j04_A 158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDL--K 233 (588)
T ss_dssp CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCE--E
T ss_pred CCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEE--E
Confidence 77542 34689999999999 88899999999999987763 3456 4788888888 6
Q ss_pred eCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEE--cCCCcEEEEeC-CCcEEEEEcc
Q psy17863 260 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS--HPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 260 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
|+ ++.||+++ +++|++||+.+++...... +|.+.|..++| +|++..|++++ ||+ ++|..+
T Consensus 234 Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~--gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 234 IV--DYKVVLTC-PGYVHKIDLKNYSISSLKT--GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EE--TTEEEEEC-SSEEEEEETTTTEEEEEEC--SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EE--CCEEEEEe-CCeEEEEECCCCeEEEEEc--CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 66 57899887 6999999988776644433 69999999999 99999999999 999 999976
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-31 Score=220.22 Aligned_cols=299 Identities=13% Similarity=0.110 Sum_probs=226.4
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEE-EEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEE-ecCCCcEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYC-LTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIAS-GASDKSVI 80 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~ 80 (341)
.++++.+..|. .+.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|++ ++.++.|+
T Consensus 22 ~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~ 99 (391)
T 1l0q_A 22 NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLS 99 (391)
T ss_dssp TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEE
Confidence 35667777665 48999999999977 677789999999999999988887555 8999999999998754 55679999
Q ss_pred EEECCCCceeeeecccCccEEEEEEcCCCcEE-EEecCCCeEEEEEecCCCC-------cCeEEe-ecCCCceE-EEeec
Q psy17863 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVV-ISGSQDNTVMMWDVKSRSH-------HPIQCC-LDSKDSQI-FCGSS 150 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~-------~~~~~~-~~~~~~~~-~~~~~ 150 (341)
+||+.+++.+..+..+ ..+.+++|+|+++.+ ++++.++.|++||+.+++. .....+ ..+.+..+ ++++.
T Consensus 100 v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 178 (391)
T 1l0q_A 100 VIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFD 178 (391)
T ss_dssp EEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETT
T ss_pred EEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCC
Confidence 9999999988887754 568999999999977 6888899999999987542 122333 34444455 57788
Q ss_pred cCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC----CCceEEEEccccc------CCCCeEEEEEccCC
Q psy17863 151 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC----GNNVKLWTAEEDY------GQEPIVDACFTRDC 220 (341)
Q Consensus 151 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~------~~~~i~~~~~~~~~ 220 (341)
++.|++||+++.+....+. ....+..++++|+++.++++. ++.+++||+.... ....+.+++|+|++
T Consensus 179 ~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg 255 (391)
T 1l0q_A 179 SMSISVIDTVTNSVIDTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDG 255 (391)
T ss_dssp TTEEEEEETTTTEEEEEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTS
T ss_pred CCEEEEEECCCCeEEEEEe---cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCC
Confidence 9999999999887665554 345688999999999888774 5899999987643 34567899999999
Q ss_pred CEE-EEeecCCeEEEEeccccceeeeecCccccee---EEE----------EEeCCCC----------CEEEEecCCCcE
Q psy17863 221 QCI-LTCSTDECLRLFDKATGELLEEYKGHKSGDF---RIE----------CCLDSKD----------SQIFCGSSDGKI 276 (341)
Q Consensus 221 ~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~~~----------~~~~~~~----------~~l~~~~~dg~i 276 (341)
+++ ++++.|+.|++||+.+++.+..+..+..+.. .+. ..|+.+. ..+...+.|...
T Consensus 256 ~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (391)
T 1l0q_A 256 KKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATE 335 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSE
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceE
Confidence 977 5668899999999999998888876654421 010 0111111 345666778899
Q ss_pred EEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC
Q psy17863 277 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 277 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
++|++.++... .+..+ ...|+++|.|.++..
T Consensus 336 ~~W~~~~g~~~------~~~~~--~~~~~~~g~y~~~~~ 366 (391)
T 1l0q_A 336 WKWDFGDGSSS------KKQNP--THTYSETGIYTVRLT 366 (391)
T ss_dssp EEEECSSSCEE------CSSSC--EECCSSCEEEEEEEE
T ss_pred EEEECCCCccc------CcCCC--eEEeCCCceEEEEEE
Confidence 99999877531 22222 357899998877553
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-33 Score=218.41 Aligned_cols=211 Identities=15% Similarity=0.180 Sum_probs=156.3
Q ss_pred cEEEEEEccC----CCEEEEEeC--------------------CCeEEEEcC-CCcceeeEecCcccceeEEEEec---C
Q psy17863 15 AIRAVRFNVD----GSYCLTCGS--------------------DKKIKLWNP-YRNLLLKTYGGHAHEVNDATAAC---D 66 (341)
Q Consensus 15 ~v~~~~~~~~----~~~l~t~~~--------------------dg~i~iw~~-~~~~~~~~~~~~~~~v~~~~~~~---~ 66 (341)
.|++++|+|| ++++++++. |+.|++|++ .+++.+..+..|...++.++|+| +
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~ 192 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGM 192 (356)
T ss_dssp EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETS
T ss_pred ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCC
Confidence 5667777778 777776553 888999998 45777888888999999999999 7
Q ss_pred CCEEEEecCCCcEEEEECCCCceeeeecccC---ccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCc
Q psy17863 67 SSQIASGASDKSVILWEVTTGQPVRRWREHA---SKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDS 143 (341)
Q Consensus 67 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 143 (341)
+.+|++++.|++|+|||+.++++++++.+|. ..+.+++|+|++.++++++.+.. +|+
T Consensus 193 ~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~--~w~------------------ 252 (356)
T 2w18_A 193 QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA--KES------------------ 252 (356)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC---------------------------
T ss_pred CceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC--cce------------------
Confidence 7999999999999999999999999998654 46778899999999988876533 243
Q ss_pred eEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEE
Q psy17863 144 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCI 223 (341)
Q Consensus 144 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l 223 (341)
+++|+.|+++++||..+++.+..+. +++ |++. ...+.+. +.++.++
T Consensus 253 -laSGs~D~tIklWd~~tgk~l~v~~----------~~~-p~Gh--------------------~~~~lsg--~~sg~~l 298 (356)
T 2w18_A 253 -ESLRSPVFQLIVINPKTTLSVGVML----------YCL-PPGQ--------------------AGRFLEG--DVKDHCA 298 (356)
T ss_dssp ------CCEEEEEEETTTTEEEEEEE----------ECC-CTTC--------------------CCCEEEE--EEETTEE
T ss_pred -eeccCCCcEEEEEECCCCEEEEEEE----------eec-cCCC--------------------cceeEcc--ccCCCEE
Confidence 5677889999999998876554321 111 2221 1122222 2337789
Q ss_pred EEeecCCeEEEEeccccceeeeecCccccee-EEEEEeCCCCCEEEEecCCCcEEEEee
Q psy17863 224 LTCSTDECLRLFDKATGELLEEYKGHKSGDF-RIECCLDSKDSQIFCGSSDGKIYKWQL 281 (341)
Q Consensus 224 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (341)
++++.|++|++||+.+++++.++.+|...+. .+ +|+|+|++|++|+.|++|+|||+
T Consensus 299 ASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~v--afSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 299 AAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFV--KWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECCC--CCCCEE--EECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEE--EECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999999999999999987655 35 89999999999999999999996
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=227.38 Aligned_cols=259 Identities=13% Similarity=0.118 Sum_probs=196.2
Q ss_pred EeeeCCcEEEEEEccCCCEE-EEEeCCCeEEEEcCC--CcceeeEec--CcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 9 IDCKQGAIRAVRFNVDGSYC-LTCGSDKKIKLWNPY--RNLLLKTYG--GHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 9 l~~h~~~v~~~~~~~~~~~l-~t~~~dg~i~iw~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
..+|.+.|++++|+|++++| ++++.||.|++||+. +++.+..+. .|...|.+++|+|++++|++++.+|.+++|+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 45678899999999999996 899999999999998 888888876 5678899999999999999999999999999
Q ss_pred CCCCceee----eecccCccEEEEEEcCC---CcEEEEecCCCeEEEEEecCCCC---------cCeEEeecCCCceEEE
Q psy17863 84 VTTGQPVR----RWREHASKVTCVKFNED---SSVVISGSQDNTVMMWDVKSRSH---------HPIQCCLDSKDSQIFC 147 (341)
Q Consensus 84 ~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~ 147 (341)
+.+++... .+.+|...|.+++|+|+ +++|++++.|+.|++||++++.. ..+..+.+..+..+++
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~s 257 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLS 257 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEEE
Confidence 98887554 77889999999999999 99999999999999999986542 2334444446779999
Q ss_pred eeccCeEEEEEccCCcceeeeEeeecCceEEEEEEC---CCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEE
Q psy17863 148 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH---PTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCIL 224 (341)
Q Consensus 148 ~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~ 224 (341)
++.|+.|++||+.+++.+..+...... ..+.+. +...+. ..........+..++|+|++++++
T Consensus 258 ~~~d~~v~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----------~~~~~~~~~~v~~i~~~~~~~~l~ 323 (450)
T 2vdu_B 258 AGGDDKIFAWDWKTGKNLSTFDYNSLI---KPYLNDQHLAPPRFQ-----------NENNDIIEFAVSKIIKSKNLPFVA 323 (450)
T ss_dssp EESSSEEEEEETTTCCEEEEEECHHHH---GGGCCTTSBC---------------------CBCCCEEEEEECSSSSEEE
T ss_pred EeCCCeEEEEECCCCcEeeeecchhhh---hhhhhhccccccccc-----------ccccccceEEEEEEEEeCCCCEEE
Confidence 999999999999998877666432110 000000 000000 000012346788999999999999
Q ss_pred Eee-cCCeEEEEec--ccc---ceeeeecCcccceeEEEEEeCCCCCEEEEecC------CCcEEEEeeeCC
Q psy17863 225 TCS-TDECLRLFDK--ATG---ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS------DGKIYKWQLVDS 284 (341)
Q Consensus 225 ~~~-~d~~i~i~d~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~ 284 (341)
+++ .++.|++|++ .++ +.+..+..| ..+..+ +++|++.++++++. +..|.+|.+...
T Consensus 324 ~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~--~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 324 FFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISL--SAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEE--EEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred EEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEE--EecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 998 8999999999 555 667778877 666666 88886544444443 556899987654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=246.31 Aligned_cols=214 Identities=17% Similarity=0.233 Sum_probs=176.5
Q ss_pred ceeeeEEeeeCCcEEEEEEccC--CCEEEEEeCCCeEEEEcCCCcc--eeeEecCcccceeEEEEecC--CCEEEEecCC
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVD--GSYCLTCGSDKKIKLWNPYRNL--LLKTYGGHAHEVNDATAACD--SSQIASGASD 76 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~--~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d 76 (341)
.+++.++.+|.++|++++|+|+ +++|++|+.||.|++||+.+++ ....+..|...|++++|+|+ ++++++++.|
T Consensus 43 ~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~d 122 (753)
T 3jro_A 43 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122 (753)
T ss_dssp EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCC
Confidence 3567789999999999999988 9999999999999999998886 67788899999999999999 9999999999
Q ss_pred CcEEEEECCCCc--eeeeecccCccEEEEEEcC-------------CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCC
Q psy17863 77 KSVILWEVTTGQ--PVRRWREHASKVTCVKFNE-------------DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSK 141 (341)
Q Consensus 77 g~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 141 (341)
|.|++||+.++. ....+..|...|.+++|+| ++..+++++.||.|++||++++.
T Consensus 123 g~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~----------- 191 (753)
T 3jro_A 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA----------- 191 (753)
T ss_dssp SEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT-----------
T ss_pred CcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc-----------
Confidence 999999998873 3455678999999999999 47777888878877777776542
Q ss_pred CceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC--
Q psy17863 142 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD-- 219 (341)
Q Consensus 142 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-- 219 (341)
........ -..|..+|.+++|+|+
T Consensus 192 ----------------------~~~~~~~~--------------------------------~~~h~~~V~~l~~sp~~~ 217 (753)
T 3jro_A 192 ----------------------QTYVLEST--------------------------------LEGHSDWVRDVAWSPTVL 217 (753)
T ss_dssp ----------------------TEEEEEEE--------------------------------ECCCSSCEEEEEECCCCS
T ss_pred ----------------------ccceeeee--------------------------------ecCCCCcEEEEEeccCCC
Confidence 11000000 0114567889999999
Q ss_pred -CCEEEEeecCCeEEEEeccccc-----eeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 220 -CQCILTCSTDECLRLFDKATGE-----LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 220 -~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
++++++++.||.|++||+.+++ .......|...+..+ +|+|+++++++|+.||.|++|++..
T Consensus 218 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l--~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 218 LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRA--SWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCE--EECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEE--EEcCCCCEEEEEcCCCEEEEEecCC
Confidence 8999999999999999998764 334445677888877 8999999999999999999999874
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-30 Score=234.09 Aligned_cols=306 Identities=10% Similarity=0.037 Sum_probs=231.1
Q ss_pred CCcEEEEEEccCCCEEEEEeC-CC-----eEEEEcCCCcceeeEecCccc------------------------ceeEEE
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGS-DK-----KIKLWNPYRNLLLKTYGGHAH------------------------EVNDAT 62 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~-dg-----~i~iw~~~~~~~~~~~~~~~~------------------------~v~~~~ 62 (341)
...|.+++|+|||++|++++. |+ .|++||+.+++....+..+.. .+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456899999999999999998 88 999999999887776654432 388999
Q ss_pred EecCCCEEEEecCCCcEEEEECCCCc--eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcC-------
Q psy17863 63 AACDSSQIASGASDKSVILWEVTTGQ--PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP------- 133 (341)
Q Consensus 63 ~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------- 133 (341)
|+|||++|++++. +.|.+||+.+++ ....+..|...+..++|+|||++|+.++ ++.|.+||+.+++...
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 9999999999886 899999998873 4556677888899999999999999887 5699999987753211
Q ss_pred ------------------eEEeecCCCceEEEeeccC---------------------------------eEEEEEccC-
Q psy17863 134 ------------------IQCCLDSKDSQIFCGSSDG---------------------------------KIYKWQLVD- 161 (341)
Q Consensus 134 ------------------~~~~~~~~~~~~~~~~~~g---------------------------------~i~~~d~~~- 161 (341)
......+++..++.++.++ .|.+||+.+
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 1233445556788877665 788999887
Q ss_pred CcceeeeEeeecCceEEEEEECCCCceEEEeC------CCceEEEEccccc-------CC-C---CeEEEEEccCCCEEE
Q psy17863 162 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC------GNNVKLWTAEEDY-------GQ-E---PIVDACFTRDCQCIL 224 (341)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~-------~~-~---~i~~~~~~~~~~~l~ 224 (341)
++.........+...+..++| |+++.++... +..|.+||..+.. +. . .+..++|+|||++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~ 352 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILW 352 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEE
T ss_pred CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEE
Confidence 665433322234567899999 9999988654 2568899887643 11 1 346889999999999
Q ss_pred EeecCCeEEEEecc-ccceeeeecCcccceeEEEEEeCCCCCEEE-EecCCC--cEEEEeeeC-CCceEEEEeeeeccce
Q psy17863 225 TCSTDECLRLFDKA-TGELLEEYKGHKSGDFRIECCLDSKDSQIF-CGSSDG--KIYKWQLVD-SSQISTLIHSVGKAVV 299 (341)
Q Consensus 225 ~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~-~~~~~~~~~~~~~~~v 299 (341)
+++.++.+++|.+. +++ ...+..+...+..+ ..|+|+++.|+ +++.++ .+++|++.. ++....+. . ...+
T Consensus 353 ~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~-~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~--~-~~~~ 427 (741)
T 2ecf_A 353 SSERTGFQHLYRIDSKGK-AAALTHGNWSVDEL-LAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS--K-APGM 427 (741)
T ss_dssp EECTTSSCEEEEECSSSC-EEESCCSSSCEEEE-EEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC--C-SCSE
T ss_pred EecCCCccEEEEEcCCCC-eeeeeecceEEEeE-eEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc--c-CCCc
Confidence 99999987787765 344 67777776666544 14899998775 455555 899999875 55566665 3 5678
Q ss_pred EEEEEcCCCcEEEEeC-C----CcEEEEEccc
Q psy17863 300 NSLCSHPTRKHIMSAC-G----NNVKLWTAEE 326 (341)
Q Consensus 300 ~~~~~~~~~~~l~~~~-d----~~i~vw~~~~ 326 (341)
..++|+||+++|+... + ..+.+|+..+
T Consensus 428 ~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 428 HSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp EEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred eEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 8999999999988765 3 4688888754
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=221.29 Aligned_cols=212 Identities=22% Similarity=0.383 Sum_probs=177.3
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCC-EEEEEeCCCeEEEEcCCCcce-------eeEecCcccceeEEEEec-CCCEEEEe
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGS-YCLTCGSDKKIKLWNPYRNLL-------LKTYGGHAHEVNDATAAC-DSSQIASG 73 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~ 73 (341)
.+++.++.+|...|.+++|+|+++ +|++|+.||.|++|++.++.. ...+..|...|.+++|+| ++.+|+++
T Consensus 171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~ 250 (430)
T 2xyi_A 171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV 250 (430)
T ss_dssp CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence 467788999999999999999998 999999999999999987322 456778999999999999 77899999
Q ss_pred cCCCcEEEEECCCC---ceeeeecccCccEEEEEEcCCCc-EEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEee
Q psy17863 74 ASDKSVILWEVTTG---QPVRRWREHASKVTCVKFNEDSS-VVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGS 149 (341)
Q Consensus 74 ~~dg~i~iw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 149 (341)
+.||.|++||++++ +.+..+..|...|++++|+|++. ++++++.||.|++||++....
T Consensus 251 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~------------------ 312 (430)
T 2xyi_A 251 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL------------------ 312 (430)
T ss_dssp ETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS------------------
T ss_pred eCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC------------------
Confidence 99999999999987 56777888999999999999887 688999999999999876331
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCC-EEEEeec
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQ-CILTCST 228 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~ 228 (341)
.+..+.. |...|.+++|+|+++ +|++++.
T Consensus 313 --------------~~~~~~~------------------------------------h~~~v~~i~~sp~~~~~l~s~~~ 342 (430)
T 2xyi_A 313 --------------KLHSFES------------------------------------HKDEIFQVQWSPHNETILASSGT 342 (430)
T ss_dssp --------------CSEEEEC------------------------------------CSSCEEEEEECSSCTTEEEEEET
T ss_pred --------------CeEEeec------------------------------------CCCCEEEEEECCCCCCEEEEEeC
Confidence 1111111 245677888888874 6889999
Q ss_pred CCeEEEEeccc--------------cceeeeecCcccceeEEEEEeCCCCC-EEEEecCCCcEEEEeeeCC
Q psy17863 229 DECLRLFDKAT--------------GELLEEYKGHKSGDFRIECCLDSKDS-QIFCGSSDGKIYKWQLVDS 284 (341)
Q Consensus 229 d~~i~i~d~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 284 (341)
|+.|++||+.. .+.+..+.+|...+..+ +|+|+++ ++++++.||.|++|++...
T Consensus 343 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 343 DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDF--SWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEE--EECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEE--EECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999999986 35677778898888887 8999999 8999999999999998654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-29 Score=215.23 Aligned_cols=276 Identities=13% Similarity=0.169 Sum_probs=212.5
Q ss_pred eCCcEEEEE---EccCCCEEEEEe--------------CCC--eEEEEcCCCc--ceeeEecCcccceeEEEEecCCCEE
Q psy17863 12 KQGAIRAVR---FNVDGSYCLTCG--------------SDK--KIKLWNPYRN--LLLKTYGGHAHEVNDATAACDSSQI 70 (341)
Q Consensus 12 h~~~v~~~~---~~~~~~~l~t~~--------------~dg--~i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l 70 (341)
....+..++ |+|+++.++..+ .++ .|..+|..++ +.+..+..+ ..+.+++|+|++.++
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLA 137 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEE
Confidence 345678888 899887666432 223 5555565444 556666644 456699999988888
Q ss_pred EEecCCCcEEEEECCCCceee-----eecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceE
Q psy17863 71 ASGASDKSVILWEVTTGQPVR-----RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQI 145 (341)
Q Consensus 71 ~~~~~dg~i~iw~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 145 (341)
++++.++.|++||+.+++... .+.+|...|.+++|++++.++++++.|+.|++||+++++
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~--------------- 202 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA--------------- 202 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC---------------
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce---------------
Confidence 888889999999999998877 456788999999999999999999999999999887543
Q ss_pred EEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc------CCCCeEEEEEc
Q psy17863 146 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY------GQEPIVDACFT 217 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~------~~~~i~~~~~~ 217 (341)
....+. .+...+.+++++|+++.++++. ++.+++||+.... ....+..++|+
T Consensus 203 ------------------~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 262 (433)
T 3bws_A 203 ------------------YKATVD--LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLS 262 (433)
T ss_dssp ------------------EEEEEE--CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEEC
T ss_pred ------------------EEEEEc--CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEc
Confidence 111111 1344588999999998875443 5899999987543 44568999999
Q ss_pred cCCCEEEEee--------cCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCE-EEEecCCCcEEEEeeeCCCceE
Q psy17863 218 RDCQCILTCS--------TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVDSSQIS 288 (341)
Q Consensus 218 ~~~~~l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~ 288 (341)
|+++++++++ .|+.|++||+.+++.+..+. +...+..+ +++|+++. +++++.|+.|++||+.+++.+.
T Consensus 263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~--~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~ 339 (433)
T 3bws_A 263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHI--VSGNTENKIYVSDMCCSKIEVYDLKEKKVQK 339 (433)
T ss_dssp TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEE--EECSSTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceE--EECCCCCEEEEEecCCCEEEEEECCCCcEEE
Confidence 9999999888 48899999999888776653 44455555 89999975 4667899999999999888777
Q ss_pred EEEeeeeccceEEEEEcCCCcEEEEeC-C---------------CcEEEEEcccccC
Q psy17863 289 TLIHSVGKAVVNSLCSHPTRKHIMSAC-G---------------NNVKLWTAEEDYG 329 (341)
Q Consensus 289 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-d---------------~~i~vw~~~~~~~ 329 (341)
.+. +...+.+++|+|++++|++++ + |.|++|++.++..
T Consensus 340 ~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 340 SIP---VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp EEE---CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred Eec---CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 765 567899999999999888876 3 4899999977543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-30 Score=240.16 Aligned_cols=314 Identities=11% Similarity=0.068 Sum_probs=239.3
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCC------CeEEEEcCCCcceeeEecCcccce-------eEEEEecCCCEEE
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSD------KKIKLWNPYRNLLLKTYGGHAHEV-------NDATAACDSSQIA 71 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~d------g~i~iw~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~l~ 71 (341)
..+.+..|.+.+.+++|||||++||+++.+ ..|++|++.+++ ...+..|...+ ..++|+|||+.++
T Consensus 44 ~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~ 122 (1045)
T 1k32_A 44 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLII 122 (1045)
T ss_dssp CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEE
T ss_pred cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEE
Confidence 456788899999999999999999987643 479999988776 56788888888 9999999999777
Q ss_pred EecCC------CcEEEEECCCCceee-------------------------------------------------eeccc
Q psy17863 72 SGASD------KSVILWEVTTGQPVR-------------------------------------------------RWREH 96 (341)
Q Consensus 72 ~~~~d------g~i~iw~~~~~~~~~-------------------------------------------------~~~~~ 96 (341)
+++.+ ..|.+|++.+++... .+..|
T Consensus 123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~ 202 (1045)
T 1k32_A 123 STDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM 202 (1045)
T ss_dssp EECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred EECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC
Confidence 77654 357788876554321 12345
Q ss_pred CccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--C------cCe-EEeecCCCceEEEeeccCeEEEEEccCCcceee
Q psy17863 97 ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--H------HPI-QCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST 167 (341)
Q Consensus 97 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~------~~~-~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~ 167 (341)
...+.++.|+++ .++++++.++.+.+|.+.... . ... .....+++..++.+ .++.|.+|++.. ..+..
T Consensus 203 ~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~-~~l~~ 279 (1045)
T 1k32_A 203 STHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFS-KGGSIYIFNPDT-EKIEK 279 (1045)
T ss_dssp SSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEE-ETTEEEEECTTT-CCEEE
T ss_pred CCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEE-eCCEEEEecCCc-eEeee
Confidence 667788889887 677788888999999876421 1 111 12233344456555 689999999843 33332
Q ss_pred eEeee---------cCceEEEEEEC-CCCceEEEeCCCceEEEEccccc------CCC-CeEEEEEccCCCEEEEeecCC
Q psy17863 168 LIHSV---------GKAVVNSLCSH-PTRKHIMSACGNNVKLWTAEEDY------GQE-PIVDACFTRDCQCILTCSTDE 230 (341)
Q Consensus 168 ~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~------~~~-~i~~~~~~~~~~~l~~~~~d~ 230 (341)
+.... +...+..++|+ |+++.++....+.+.+|+..... +.. .+..++|+ +|+.++.++.++
T Consensus 280 l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~ 358 (1045)
T 1k32_A 280 IEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREG 358 (1045)
T ss_dssp CCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTE
T ss_pred eccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCC
Confidence 22210 12357899999 99999999889999999986543 344 78899999 999999998888
Q ss_pred eEE-EEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCc
Q psy17863 231 CLR-LFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 309 (341)
Q Consensus 231 ~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 309 (341)
.+. +||+.+++.. .+.+|...+..+ +|+|+|++|++++.++.|++||+.+++....+. .|...+.+++|+|||+
T Consensus 359 ~l~~~~d~~~~~~~-~l~~~~~~~~~~--~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~--~~~~~v~~~~~SpDG~ 433 (1045)
T 1k32_A 359 DFLGIYDYRTGKAE-KFEENLGNVFAM--GVDRNGKFAVVANDRFEIMTVDLETGKPTVIER--SREAMITDFTISDNSR 433 (1045)
T ss_dssp EEEEEEETTTCCEE-ECCCCCCSEEEE--EECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSSCCCCEEECTTSC
T ss_pred ceEEEEECCCCCce-EecCCccceeee--EECCCCCEEEEECCCCeEEEEECCCCceEEecc--CCCCCccceEECCCCC
Confidence 898 9998876654 344676666666 899999999999999999999999998877766 6888899999999999
Q ss_pred EEEEeC-CC----------cEEEEEccccc
Q psy17863 310 HIMSAC-GN----------NVKLWTAEEDY 328 (341)
Q Consensus 310 ~l~~~~-d~----------~i~vw~~~~~~ 328 (341)
+|++++ ++ .|++|++.++.
T Consensus 434 ~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 434 FIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp EEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred eEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 999887 54 89999998654
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-31 Score=221.90 Aligned_cols=224 Identities=9% Similarity=0.089 Sum_probs=155.2
Q ss_pred eeeEEeeeCCcEEEEEEcc--------CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCC-EEEEecC
Q psy17863 5 CVQTIDCKQGAIRAVRFNV--------DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS-QIASGAS 75 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~--------~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~ 75 (341)
.+..+.+|.+.|++++|+| |+++||+|+.|++|+|||+.++.++..+..|...|.+++|+|++. +|++++.
T Consensus 128 ~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~ 207 (393)
T 4gq1_A 128 VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGER 207 (393)
T ss_dssp EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEET
T ss_pred eecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCC
Confidence 3456789999999999998 889999999999999999988888888888999999999999874 7999999
Q ss_pred CCcEEEEECCCCceeeee-------------------------cccCccEEEEEEc-CCCcEEEEecCCCeEEEEEecCC
Q psy17863 76 DKSVILWEVTTGQPVRRW-------------------------REHASKVTCVKFN-EDSSVVISGSQDNTVMMWDVKSR 129 (341)
Q Consensus 76 dg~i~iw~~~~~~~~~~~-------------------------~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~ 129 (341)
||+|++||+.+++..... .+|...+.++.|+ ++++.+++++.|+.+++||+...
T Consensus 208 d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~ 287 (393)
T 4gq1_A 208 NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN 287 (393)
T ss_dssp TSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred CCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence 999999999887644332 2455566666665 56777777777777777776543
Q ss_pred CCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCC
Q psy17863 130 SHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQE 209 (341)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 209 (341)
+ ....+.. +...+..+.+.|+.+.+.. ..
T Consensus 288 ~---------------------------------~~~~l~~--~~~~~~~~~~~~~~~~~~~----------------~~ 316 (393)
T 4gq1_A 288 N---------------------------------DYNEISD--STMKLGPKNLLPNVQGISL----------------FP 316 (393)
T ss_dssp ---------------------------------------------------CCSCSEEEECS----------------SC
T ss_pred C---------------------------------CCceEee--ecCccccEEEccccccccc----------------cC
Confidence 3 2111111 1112333333333322211 11
Q ss_pred CeEEEEEcc--CCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeee
Q psy17863 210 PIVDACFTR--DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 282 (341)
Q Consensus 210 ~i~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (341)
......++| ++.++++|+.||.|++||..+++....+..|..+|..+ +|+|+|++||+++.+| +.+|.+.
T Consensus 317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~sv--afspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDF--CWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEE--EECTTSSEEEEEESSE-EEEEEEG
T ss_pred cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEE--EEcCCCCEEEEEeCCC-eEEEEEe
Confidence 112223333 45567788899999999999999988888898888887 9999999999998766 6666653
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-30 Score=215.64 Aligned_cols=286 Identities=13% Similarity=0.075 Sum_probs=216.5
Q ss_pred CCcEEEEEEccCCC-EEEEEe----CCC----eEEEEcC--CCccee--eEecCcccceeEEEEec--------------
Q psy17863 13 QGAIRAVRFNVDGS-YCLTCG----SDK----KIKLWNP--YRNLLL--KTYGGHAHEVNDATAAC-------------- 65 (341)
Q Consensus 13 ~~~v~~~~~~~~~~-~l~t~~----~dg----~i~iw~~--~~~~~~--~~~~~~~~~v~~~~~~~-------------- 65 (341)
...+...+|++.|. ++++|+ .+| .+++||+ .+++.+ ..+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 34677788888775 565776 467 8999999 888877 45888888888777765
Q ss_pred CCCEEEEecCC------CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCC---eEEEEEecCCCC-----
Q psy17863 66 DSSQIASGASD------KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN---TVMMWDVKSRSH----- 131 (341)
Q Consensus 66 ~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~----- 131 (341)
.+..++.++.+ +.|++||++ +...+.+..|...+.+++|+|+++.|++++.++ .|++||+++++.
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~ 220 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS 220 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC
T ss_pred CCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeec
Confidence 15566665543 799999997 455677788999999999999999999999875 999999987653
Q ss_pred --cCeEEeecCCC-ceEE-EeeccC--eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC--C--ceEEEE
Q psy17863 132 --HPIQCCLDSKD-SQIF-CGSSDG--KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG--N--NVKLWT 201 (341)
Q Consensus 132 --~~~~~~~~~~~-~~~~-~~~~~g--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~i~~~~ 201 (341)
..+....++++ ..++ +++.++ .|++||+.+++.. .+. .+...+.+++|+|+++.++.+++ + .+.+|+
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~--~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d 297 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVT--DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN 297 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECC--CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCc--CCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence 22333444444 4565 555555 4999999886642 222 23456899999999998887764 3 577778
Q ss_pred ccccc------CCCCeEEEEEccCCCEEEEeecC---CeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecC
Q psy17863 202 AEEDY------GQEPIVDACFTRDCQCILTCSTD---ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS 272 (341)
Q Consensus 202 ~~~~~------~~~~i~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (341)
..... +...+..++|+|+|++|++++.+ ..|++||+.+++.. .+..+. .+..+ +|+|+|++|++++.
T Consensus 298 ~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~--~~spdg~~l~~~s~ 373 (415)
T 2hqs_A 298 INGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETP--SLAPNGTMVIYSSS 373 (415)
T ss_dssp TTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEE--EECTTSSEEEEEEE
T ss_pred CCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCe--EEcCCCCEEEEEEc
Confidence 76543 44678899999999999988764 58999999988763 455454 55555 89999999998887
Q ss_pred CC---cEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCc
Q psy17863 273 DG---KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 309 (341)
Q Consensus 273 dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 309 (341)
++ .|++||+. ++....+. .|.+.|.+++|+|...
T Consensus 374 ~~~~~~l~~~d~~-g~~~~~l~--~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 374 QGMGSVLNLVSTD-GRFKARLP--ATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ETTEEEEEEEETT-SCCEEECC--CSSSEEEEEEECCCCC
T ss_pred CCCccEEEEEECC-CCcEEEee--CCCCCCcCCccccccc
Confidence 76 79999975 66677777 7889999999999754
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-27 Score=206.18 Aligned_cols=284 Identities=10% Similarity=0.096 Sum_probs=215.1
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcC--CCcceeeEecCcccceeEEEEec----CCCEEEEecC-
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNP--YRNLLLKTYGGHAHEVNDATAAC----DSSQIASGAS- 75 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~- 75 (341)
.+++.++..+.. +..++|+|||++|++++.|+.|.+||+ .+++.+.++. +...+..++|+| |++++++++.
T Consensus 169 ~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~ 246 (543)
T 1nir_A 169 KKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYW 246 (543)
T ss_dssp CCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred ceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEcc
Confidence 356777774433 889999999999999999999999999 8888888888 455679999999 9999999885
Q ss_pred CCcEEEEECCCCceeeeecc----------cC-ccEEEEEEcCCCc-EEEEecCCCeEEEEEecCCCCcC----------
Q psy17863 76 DKSVILWEVTTGQPVRRWRE----------HA-SKVTCVKFNEDSS-VVISGSQDNTVMMWDVKSRSHHP---------- 133 (341)
Q Consensus 76 dg~i~iw~~~~~~~~~~~~~----------~~-~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~---------- 133 (341)
+++|.+||..+++++..+.. |. ..+..+.++|++. ++++...++.|.+||+.+.+...
T Consensus 247 ~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~ 326 (543)
T 1nir_A 247 PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFL 326 (543)
T ss_dssp SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSC
T ss_pred CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCc
Confidence 89999999999998887764 22 3788999999654 56677789999999987754211
Q ss_pred eEEeecCCCceEEEe-eccCeEEEEEccCCcceeeeEeee--cCceEEEEEECCC-CceEEEeC--CCceEEEEccccc-
Q psy17863 134 IQCCLDSKDSQIFCG-SSDGKIYKWQLVDSSQISTLIHSV--GKAVVNSLCSHPT-RKHIMSAC--GNNVKLWTAEEDY- 206 (341)
Q Consensus 134 ~~~~~~~~~~~~~~~-~~~g~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~--~~~i~~~~~~~~~- 206 (341)
....+.+++.+++++ ..+++|.+||..+++....+.... +......+ ++|+ +..++++. +++|.+|+.....
T Consensus 327 ~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~ 405 (543)
T 1nir_A 327 HDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH 405 (543)
T ss_dssp CCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred cCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC
Confidence 122334455555544 568999999999998777665321 11112222 4677 56666653 5899999998722
Q ss_pred -------------CCCCeEEEEEccCCCEEEEee-------cCCeEEEEecccccee-eee--------cCcccceeEEE
Q psy17863 207 -------------GQEPIVDACFTRDCQCILTCS-------TDECLRLFDKATGELL-EEY--------KGHKSGDFRIE 257 (341)
Q Consensus 207 -------------~~~~i~~~~~~~~~~~l~~~~-------~d~~i~i~d~~~~~~~-~~~--------~~~~~~~~~~~ 257 (341)
+......++++|++++|++++ .+++|.+||+.+++.. ..+ ..+...+..
T Consensus 406 ~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~-- 483 (543)
T 1nir_A 406 PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQ-- 483 (543)
T ss_dssp TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEE--
T ss_pred chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEe--
Confidence 345567899999999999987 2679999999998876 443 233444444
Q ss_pred EEeCCCCCEEEEe-----cCCCcEEEEeeeCCCceEEEE
Q psy17863 258 CCLDSKDSQIFCG-----SSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 258 ~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~ 291 (341)
+.|+|+|+.++.+ +.++.|.|||..+++++..++
T Consensus 484 ~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 484 PEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp EEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 4999999998865 347999999999999988876
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-27 Score=195.40 Aligned_cols=270 Identities=13% Similarity=0.183 Sum_probs=194.5
Q ss_pred EEEccCCCE-EEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC-CCcEEEEECCCCce-eeeecc
Q psy17863 19 VRFNVDGSY-CLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS-DKSVILWEVTTGQP-VRRWRE 95 (341)
Q Consensus 19 ~~~~~~~~~-l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~-~~~~~~ 95 (341)
..|.+++++ +++.+.++.|.+||..+++....+..+...+ .++|+|+++++++++. ++.|.+||+.+++. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345665554 6777889999999999999888887666677 9999999997766655 88999999999987 777776
Q ss_pred cCccEEEEEEcCCCcEEEEecCCC---eEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeee
Q psy17863 96 HASKVTCVKFNEDSSVVISGSQDN---TVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV 172 (341)
Q Consensus 96 ~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~ 172 (341)
+..+..+++|+|++++++++..++ .|.+||+.+++ ....+.
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~---------------------------------~~~~~~--- 125 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK---------------------------------FISTIP--- 125 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE---------------------------------EEEEEE---
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCC---------------------------------eEEEEE---
Confidence 666665599999999998555442 67777765433 222221
Q ss_pred cCceEEEEEECCCCceEEEeC--CCc-eEEEEccccc-----------CCCCeEEEEEccCCCEEEEe-ecCCeEEEEec
Q psy17863 173 GKAVVNSLCSHPTRKHIMSAC--GNN-VKLWTAEEDY-----------GQEPIVDACFTRDCQCILTC-STDECLRLFDK 237 (341)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~--~~~-i~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~ 237 (341)
.......++++|++++++++. ++. +.+|++.... .......++|+|+|++++++ ..++.|++||+
T Consensus 126 ~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~ 205 (331)
T 3u4y_A 126 IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILET 205 (331)
T ss_dssp CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEEC
Confidence 122357899999998665543 367 9999875321 23557899999999966554 46889999999
Q ss_pred cccce---eeeecCcccceeEEEEEeCCCCCEEEEe-cCCCcEEEEeeeCCCc--eEEEEee--eecc---ceEEEEEcC
Q psy17863 238 ATGEL---LEEYKGHKSGDFRIECCLDSKDSQIFCG-SSDGKIYKWQLVDSSQ--ISTLIHS--VGKA---VVNSLCSHP 306 (341)
Q Consensus 238 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~--~~~~~~~--~~~~---~v~~~~~~~ 306 (341)
.+++. +..+..+ ..+..+ +++|+|++++.+ ..++.|.+||+.+++. +..+... .+.. ....++|+|
T Consensus 206 ~~~~~~~~~~~~~~~-~~~~~~--~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 282 (331)
T 3u4y_A 206 QNPENITLLNAVGTN-NLPGTI--VVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK 282 (331)
T ss_dssp SSTTSCEEEEEEECS-SCCCCE--EECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT
T ss_pred CCCcccceeeeccCC-CCCceE--EECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC
Confidence 98888 7777654 334444 899999977655 4578899999988876 3333311 1112 235689999
Q ss_pred CCcEEEEeC--CCcEEEEEccccc
Q psy17863 307 TRKHIMSAC--GNNVKLWTAEEDY 328 (341)
Q Consensus 307 ~~~~l~~~~--d~~i~vw~~~~~~ 328 (341)
|+++|++++ ++.|.+|++.+..
T Consensus 283 dg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 283 TETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp TSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCCEEEEecCCCCcEEEEEecCCc
Confidence 999886655 6799999998653
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-27 Score=220.03 Aligned_cols=307 Identities=8% Similarity=0.021 Sum_probs=230.0
Q ss_pred eeEEeeeCCcE-------EEEEEccCCCEEEEEeCC------CeEEEEcCCCccee------------------------
Q psy17863 6 VQTIDCKQGAI-------RAVRFNVDGSYCLTCGSD------KKIKLWNPYRNLLL------------------------ 48 (341)
Q Consensus 6 ~~~l~~h~~~v-------~~~~~~~~~~~l~t~~~d------g~i~iw~~~~~~~~------------------------ 48 (341)
.+.|..|...+ ..++|+|||+++++++.+ ..|.+|++.+++..
T Consensus 92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~ 171 (1045)
T 1k32_A 92 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTF 171 (1045)
T ss_dssp EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCS
T ss_pred eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCC
Confidence 56778888888 999999999977777644 35777876554321
Q ss_pred -------------------------eEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC-CceeeeecccCccEEE
Q psy17863 49 -------------------------KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT-GQPVRRWREHASKVTC 102 (341)
Q Consensus 49 -------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~~~~v~~ 102 (341)
..+.+|...+.++.|+++ .++++++.|+.+.+|.+.. +.....+..|. .+..
T Consensus 172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~ 249 (1045)
T 1k32_A 172 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYP 249 (1045)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCE
T ss_pred CccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Ccce
Confidence 122456677888889887 6677778889999998753 44455555554 3567
Q ss_pred EEEcCCCcEEEEecCCCeEEEEEecCCCCc------------------CeEEeec--CCCceEEEeeccCeEEEEEccCC
Q psy17863 103 VKFNEDSSVVISGSQDNTVMMWDVKSRSHH------------------PIQCCLD--SKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 103 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------------------~~~~~~~--~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
.+|+|+|+.|+.+ .++.|.+|++...... .+..+.+ +++..++.++ ++.+.+|+...+
T Consensus 250 ~~~SpDG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~ 327 (1045)
T 1k32_A 250 RHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT 327 (1045)
T ss_dssp EEEEESSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS
T ss_pred eeEcCCCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC
Confidence 7999999988887 5899999997432210 1223333 3444566655 889999998876
Q ss_pred cceeeeEeeecCc-eEEEEEECCCCceEEEeCC-CceE-EEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEE
Q psy17863 163 SQISTLIHSVGKA-VVNSLCSHPTRKHIMSACG-NNVK-LWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLR 233 (341)
Q Consensus 163 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~i~-~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~ 233 (341)
+... + ..+.. .+..++|+ +++.++...+ ..+. +|+..... +...+..++|+|||++|++++.++.|+
T Consensus 328 ~~~~-~--~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~ 403 (1045)
T 1k32_A 328 YVLK-V--PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIM 403 (1045)
T ss_dssp BEEE-C--SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceEE-c--cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEE
Confidence 5433 2 12233 68899999 9988887665 5666 77765432 456789999999999999999999999
Q ss_pred EEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCC----------cEEEEeeeCCCceEEEEeeeeccceEEEE
Q psy17863 234 LFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG----------KIYKWQLVDSSQISTLIHSVGKAVVNSLC 303 (341)
Q Consensus 234 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 303 (341)
+||+.+++....+.+|...+..+ +|+|||++|++++.++ .|++||+.+++ +..+. .|...+..++
T Consensus 404 ~~d~~tg~~~~~~~~~~~~v~~~--~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~--~~~~~~~~~~ 478 (1045)
T 1k32_A 404 TVDLETGKPTVIERSREAMITDF--TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT--TENSHDYAPA 478 (1045)
T ss_dssp EEETTTCCEEEEEECSSSCCCCE--EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS--CSSSBEEEEE
T ss_pred EEECCCCceEEeccCCCCCccce--EECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEee--CCCcccCCce
Confidence 99999998887777888877776 8999999998887644 89999998876 55555 6777889999
Q ss_pred EcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 304 SHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 304 ~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
|+|||++|+.++ ++...+|+..
T Consensus 479 ~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 479 FDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp ECTTSCEEEEEESCCCCCEECSS
T ss_pred EcCCCCEEEEEecccCCcCcchh
Confidence 999999999988 7877888754
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-27 Score=214.03 Aligned_cols=301 Identities=11% Similarity=0.111 Sum_probs=213.0
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCccee-eEecCcc-----------------cceeEEEEecCCCEEEEecCC
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLL-KTYGGHA-----------------HEVNDATAACDSSQIASGASD 76 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~d 76 (341)
.+..+.|. |+.+++++.++ | +||+.+++.+ ..+..+. ..|.+++|+|| +.++.+ .+
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~ 100 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQ 100 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ET
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-EC
Confidence 35567787 66777777788 8 9999998873 4443333 46999999999 666555 35
Q ss_pred CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC-----CCCc-------C-----------
Q psy17863 77 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS-----RSHH-------P----------- 133 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~~~~-------~----------- 133 (341)
+.|++||+.+++.... ..+...+.+++|+|||+.|+++ .++.|.+||+.+ ++.. .
T Consensus 101 ~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~e 178 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQR 178 (706)
T ss_dssp TEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGG
T ss_pred CEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhh
Confidence 9999999988866443 4466778899999999999985 689999999987 5421 1
Q ss_pred -----eEEeecCCCceEEEee---------------------------------ccCeEEEEEccCCcceeeeEeeecCc
Q psy17863 134 -----IQCCLDSKDSQIFCGS---------------------------------SDGKIYKWQLVDSSQISTLIHSVGKA 175 (341)
Q Consensus 134 -----~~~~~~~~~~~~~~~~---------------------------------~~g~i~~~d~~~~~~~~~~~~~~~~~ 175 (341)
......+++..+++++ .+..|.+||+.+++.........+..
T Consensus 179 e~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 258 (706)
T 2z3z_A 179 EFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEK 258 (706)
T ss_dssp CTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTC
T ss_pred hcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCce
Confidence 1223344555777776 45789999998876544433223456
Q ss_pred eEEEEEECCCCceEEEeC-C-----CceEEEEcccc-c--------CCC---CeEEEEEcc--CCCEEEEeecCCeEEEE
Q psy17863 176 VVNSLCSHPTRKHIMSAC-G-----NNVKLWTAEED-Y--------GQE---PIVDACFTR--DCQCILTCSTDECLRLF 235 (341)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~-~-----~~i~~~~~~~~-~--------~~~---~i~~~~~~~--~~~~l~~~~~d~~i~i~ 235 (341)
.+..++|+|+++.++++. + ..+.+||..+. . ... .+..++|+| +|++++++..++.+++|
T Consensus 259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~ 338 (706)
T 2z3z_A 259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLY 338 (706)
T ss_dssp EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEE
T ss_pred eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEE
Confidence 789999999999888754 2 27899998765 1 111 235689999 99999999999999999
Q ss_pred ecc-ccceeeeecCcccceeEEEEEeCCCCCEEEEec-CCC----cEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCc
Q psy17863 236 DKA-TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGS-SDG----KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 309 (341)
Q Consensus 236 d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 309 (341)
++. +++.+..+..+...+... ++|+|+++.|+.++ .++ .|+.||+.+++ ...+. +...+.+++|+|||+
T Consensus 339 ~~~~~~~~~~~l~~~~~~v~~~-~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~---~~~~~~~~~~spdg~ 413 (706)
T 2z3z_A 339 LYDTTGRLIRQVTKGEWEVTNF-AGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT---PESGMHRTQLSPDGS 413 (706)
T ss_dssp EEETTSCEEEECCCSSSCEEEE-EEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC---CSSSEEEEEECTTSS
T ss_pred EEECCCCEEEecCCCCeEEEee-eEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc---CCCceEEEEECCCCC
Confidence 876 566777777776665541 28999998876554 444 56666665554 34443 566789999999999
Q ss_pred EEEEeC-C----CcEEEEEccccc
Q psy17863 310 HIMSAC-G----NNVKLWTAEEDY 328 (341)
Q Consensus 310 ~l~~~~-d----~~i~vw~~~~~~ 328 (341)
+++... + +.|++|++.++.
T Consensus 414 ~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 414 AIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEEecCCCCCcEEEEEECCCCe
Confidence 888765 3 469999987764
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-28 Score=217.21 Aligned_cols=298 Identities=9% Similarity=0.075 Sum_probs=211.0
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCccc---ceeEEEEecCCCEEEEecCC---------CcEEEE
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH---EVNDATAACDSSQIASGASD---------KSVILW 82 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------g~i~iw 82 (341)
.+.+++|+|||+++++ +.||+|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678999999997776 7899999999999988888877665 49999999999999998764 778899
Q ss_pred ECCCCce--eeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCe--------------------------
Q psy17863 83 EVTTGQP--VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPI-------------------------- 134 (341)
Q Consensus 83 ~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-------------------------- 134 (341)
|+.+++. +.....|...+..++|+|||+.|+.++. +.|++||+.+++...+
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 9998876 2222345555889999999999999875 7999999887542111
Q ss_pred EEe-ecCCCceEEEeeccC----------------------------------eEEEEEccCCcceeeeEeee----cCc
Q psy17863 135 QCC-LDSKDSQIFCGSSDG----------------------------------KIYKWQLVDSSQISTLIHSV----GKA 175 (341)
Q Consensus 135 ~~~-~~~~~~~~~~~~~~g----------------------------------~i~~~d~~~~~~~~~~~~~~----~~~ 175 (341)
... ..+++..|+.++.++ .|++||+.+++....+.... +..
T Consensus 176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 223 344555777776543 79999998877544443211 245
Q ss_pred eEEEEEECCCCceEEEeCC-----CceEEEEccccc--------CCCCe----EEEEEccCCCEEEE--eecCC------
Q psy17863 176 VVNSLCSHPTRKHIMSACG-----NNVKLWTAEEDY--------GQEPI----VDACFTRDCQCILT--CSTDE------ 230 (341)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~--------~~~~i----~~~~~~~~~~~l~~--~~~d~------ 230 (341)
.+..++|+|++++++.... ..+.+||+.+.. +...+ ..++|+|||+.|+. +..++
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 335 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY 335 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCccee
Confidence 6889999999998866532 468899986543 22223 37899999997775 45566
Q ss_pred eEEEEe-ccccce--eeeecCcccceeEEEEEeCCCCCEEEEecCC---CcEEEEeeeCCC--ceEEEEe-eeeccceEE
Q psy17863 231 CLRLFD-KATGEL--LEEYKGHKSGDFRIECCLDSKDSQIFCGSSD---GKIYKWQLVDSS--QISTLIH-SVGKAVVNS 301 (341)
Q Consensus 231 ~i~i~d-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~--~~~~~~~-~~~~~~v~~ 301 (341)
.|.+|| ...++. ...+..+...+.. ..+|+|+|+.|+..+.+ +.+++|++.... ....+.. ..+...+..
T Consensus 336 ~l~~~d~~~~~~~~~~~~l~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 414 (723)
T 1xfd_A 336 HITVSSSQPNSSNDNIQSITSGDWDVTK-ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFS 414 (723)
T ss_dssp EEEEECSSCCSSSCCCCBSCCSSSCEEE-EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCE
T ss_pred EEEEEeccCCCCccceeEeecCCeEEEe-eeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEE
Confidence 577777 344441 4555433333332 13799999998765554 789999986532 2333331 014667889
Q ss_pred EEEcCCCcEEEEeC
Q psy17863 302 LCSHPTRKHIMSAC 315 (341)
Q Consensus 302 ~~~~~~~~~l~~~~ 315 (341)
++|+|||++|+...
T Consensus 415 ~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 415 ASFSHSMDFFLLKC 428 (723)
T ss_dssp EEECTTSSEEEEEC
T ss_pred EEECCCCCEEEEEc
Confidence 99999999888765
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-27 Score=189.30 Aligned_cols=247 Identities=9% Similarity=0.035 Sum_probs=184.8
Q ss_pred EEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC-Cceeeeeccc-CccEEEEEEcC
Q psy17863 30 TCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT-GQPVRRWREH-ASKVTCVKFNE 107 (341)
Q Consensus 30 t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~-~~~v~~~~~~~ 107 (341)
.++.|+.|++||+.+++.. .+..|...+.+++|+|++++|++++ ++.|.+||+.+ ++.......+ ...+.+++|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 3467899999999888765 4455889999999999999999986 78999999999 8777666655 46789999999
Q ss_pred CCcEEEEec--CCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCC
Q psy17863 108 DSSVVISGS--QDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 185 (341)
Q Consensus 108 ~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (341)
++++|++++ .++...+|.++... .. ...+. ....+..++|+|+
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~-------------------------------~~-~~~~~---~~~~~~~~~~spd 139 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTG-------------------------------GT-PRLMT---KNLPSYWHGWSPD 139 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTC-------------------------------CC-CEECC---SSSSEEEEEECTT
T ss_pred CCCEEEEEEeCCCCcceEEEEECCC-------------------------------Cc-eEEee---cCCCccceEECCC
Confidence 999999988 33455555543211 11 00110 1112667788888
Q ss_pred CceEEEe--CCCceEEEEccccc--------CCCCeEEEEEccCCCEEEEee-cCCeEEEEecc-ccceeeeecCcccce
Q psy17863 186 RKHIMSA--CGNNVKLWTAEEDY--------GQEPIVDACFTRDCQCILTCS-TDECLRLFDKA-TGELLEEYKGHKSGD 253 (341)
Q Consensus 186 ~~~~~~~--~~~~i~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~~~~~~~~~~~~ 253 (341)
++.++.. .++.+.+|++.... +...+.+++|+|++++++.++ .++.+++|++. .+..+..+..+...+
T Consensus 140 g~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 219 (297)
T 2ojh_A 140 GKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGD 219 (297)
T ss_dssp SSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEE
T ss_pred CCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCccc
Confidence 8877633 35777888754321 456789999999999887766 58899999986 455667777777666
Q ss_pred eEEEEEeCCCCCEEEEecCC-----------CcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC
Q psy17863 254 FRIECCLDSKDSQIFCGSSD-----------GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
..+ +|+|++++|++++.+ +.|++||+.+++.........|...+..++|+|++++|++++
T Consensus 220 ~~~--~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 290 (297)
T 2ojh_A 220 WFP--HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVR 290 (297)
T ss_dssp EEE--EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEE
T ss_pred CCe--EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEE
Confidence 655 899999999888765 569999998887644443336778899999999999999887
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-25 Score=185.31 Aligned_cols=266 Identities=11% Similarity=0.106 Sum_probs=198.4
Q ss_pred eCCcEEEEEEccCCCEEEEEeC-------CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEE-ecCCCcEEEEE
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGS-------DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIAS-GASDKSVILWE 83 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~-------dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iw~ 83 (341)
....+..++|+|+++++++++. ++.|.+||..+++.+..+.. ...+..++|+|+++++++ ...++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 4567889999999998888774 56899999999998888764 445788999999996554 55579999999
Q ss_pred CCCCceeeeecccCc---------cEEEEEEcCCCcEEEEec--CCCeEEEEEecCCCCc---------CeEEeecCCCc
Q psy17863 84 VTTGQPVRRWREHAS---------KVTCVKFNEDSSVVISGS--QDNTVMMWDVKSRSHH---------PIQCCLDSKDS 143 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~---------~~~~~~~~~~~ 143 (341)
..+++.+..+..+.. .+.+++|+|+++++++++ .++.|.+||+.+++.. +......+++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 999998887765432 278899999999887776 4788999998765421 12223334555
Q ss_pred eEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEE
Q psy17863 144 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCI 223 (341)
Q Consensus 144 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l 223 (341)
.+++++.++.+.+||..+.+....+..... .+...+..++|+|+++++
T Consensus 198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~s~dg~~l 245 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADNKILSRKKLLDD--------------------------------GKEHFFINISLDTARQRA 245 (353)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCCS--------------------------------SSCCCEEEEEEETTTTEE
T ss_pred EEEEEcCCCeEEEEECCCCeEEEEEEcCCC--------------------------------CCCcccceEEECCCCCEE
Confidence 677777788888888777655444332100 013346678899998877
Q ss_pred EEeec-CCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEe-cCCCcEEEEeeeCCCceEEEEeeeeccceEE
Q psy17863 224 LTCST-DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG-SSDGKIYKWQLVDSSQISTLIHSVGKAVVNS 301 (341)
Q Consensus 224 ~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 301 (341)
++++. ++.|.+||..+++.+..+..... .. ++++|++++++.+ ..++.|.+||..+++.+..+. ....+.+
T Consensus 246 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~--~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~---~~~~~~~ 318 (353)
T 3vgz_A 246 FITDSKAAEVLVVDTRNGNILAKVAAPES--LA--VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD---TPTHPNS 318 (353)
T ss_dssp EEEESSSSEEEEEETTTCCEEEEEECSSC--CC--EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE---CCSEEEE
T ss_pred EEEeCCCCEEEEEECCCCcEEEEEEcCCC--ce--EEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe---cCCCCCe
Confidence 66655 48999999999988887765442 23 3889999966554 478999999999998887776 3346899
Q ss_pred EEEcCCCcEEEEeC-CC
Q psy17863 302 LCSHPTRKHIMSAC-GN 317 (341)
Q Consensus 302 ~~~~~~~~~l~~~~-d~ 317 (341)
++|+|++++|+++. ++
T Consensus 319 ~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 319 LALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEECTTSCEEEEEEECC
T ss_pred EEEcCCCCEEEEEEccc
Confidence 99999999887776 53
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-25 Score=183.80 Aligned_cols=265 Identities=9% Similarity=0.189 Sum_probs=174.1
Q ss_pred EEEEEeCCCeEEEEcCC-Cc--ceeeEecCcccceeEEEEecCCCEEEEecCC-CcEEEEECC--CCc--eeeeecccCc
Q psy17863 27 YCLTCGSDKKIKLWNPY-RN--LLLKTYGGHAHEVNDATAACDSSQIASGASD-KSVILWEVT--TGQ--PVRRWREHAS 98 (341)
Q Consensus 27 ~l~t~~~dg~i~iw~~~-~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iw~~~--~~~--~~~~~~~~~~ 98 (341)
.+++++.|+.|++|++. ++ +.+..+ .+...+.+++|+|++++|++++.+ +.|.+|++. +++ .+..+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~- 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG- 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-
Confidence 34444779999999985 33 333333 367789999999999998888876 999999997 554 334444333
Q ss_pred cEEEEEEcCCCcEEEEec-CCCeEEEEEecCCC----------CcCeE-EeecCCCceEEEee-ccCeEEEEEccCCcce
Q psy17863 99 KVTCVKFNEDSSVVISGS-QDNTVMMWDVKSRS----------HHPIQ-CCLDSKDSQIFCGS-SDGKIYKWQLVDSSQI 165 (341)
Q Consensus 99 ~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~----------~~~~~-~~~~~~~~~~~~~~-~~g~i~~~d~~~~~~~ 165 (341)
.+..++|+|++++|++++ .++.|.+||+..+. ..... ....+.+..+++++ .++.|.+||+.+....
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 788999999999886665 48899999994211 11122 23344455666666 8899999999762222
Q ss_pred eeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEee-cCCeEEEEeccc--cce
Q psy17863 166 STLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCS-TDECLRLFDKAT--GEL 242 (341)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~--~~~ 242 (341)
...... .+.. .....+..++|+|+++++++++ .++.+.+|++.. ++.
T Consensus 165 ~~~~~~-------~~~~-----------------------~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~ 214 (343)
T 1ri6_A 165 VAQDPA-------EVTT-----------------------VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNI 214 (343)
T ss_dssp EEEEEE-------EEEC-----------------------STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCC
T ss_pred eeeccc-------cccc-----------------------CCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcE
Confidence 211100 0000 0123456788888888665544 788999999853 332
Q ss_pred --eeeec----CcccceeEEEEEeCCCCCEEE-EecCCCcEEEEeeeC--C--CceEEEEeeeeccceEEEEEcCCCcEE
Q psy17863 243 --LEEYK----GHKSGDFRIECCLDSKDSQIF-CGSSDGKIYKWQLVD--S--SQISTLIHSVGKAVVNSLCSHPTRKHI 311 (341)
Q Consensus 243 --~~~~~----~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~--~--~~~~~~~~~~~~~~v~~~~~~~~~~~l 311 (341)
...+. ++........++++|++++|+ ++..++.|.+|++.. + +.+..+. .+ ..+..++|+|++++|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~-~~~~~~~~s~dg~~l 291 (343)
T 1ri6_A 215 ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP--TE-TQPRGFNVDHSGKYL 291 (343)
T ss_dssp EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE--CS-SSCCCEEECTTSSEE
T ss_pred EEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec--CC-CccceEEECCCCCEE
Confidence 22222 112122233348999998877 555799999999983 2 2333333 23 348899999999988
Q ss_pred EEeC--CCcEEEEEccc
Q psy17863 312 MSAC--GNNVKLWTAEE 326 (341)
Q Consensus 312 ~~~~--d~~i~vw~~~~ 326 (341)
++++ ++.|.+|+++.
T Consensus 292 ~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 292 IAAGQKSHHISVYEIVG 308 (343)
T ss_dssp EEECTTTCEEEEEEEET
T ss_pred EEecCCCCeEEEEEEcC
Confidence 8777 79999997763
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-27 Score=192.11 Aligned_cols=262 Identities=12% Similarity=0.085 Sum_probs=188.1
Q ss_pred CEEEEEeCCCeEEEEcCCCcceeeEecCccc--ceeEEEEecCCCEEE-EecCCCcEEEEECCCCceeeeeccc-----C
Q psy17863 26 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH--EVNDATAACDSSQIA-SGASDKSVILWEVTTGQPVRRWREH-----A 97 (341)
Q Consensus 26 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~-----~ 97 (341)
+++++++.++.|.+||..+++.+..+..... .+..++|+|++++++ ++..++.|.+||+.+++.+..+... .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999999988887763322 588999999998664 5566789999999999887766531 2
Q ss_pred ccEEEEEEcCCCcEEEEec------------CCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcce
Q psy17863 98 SKVTCVKFNEDSSVVISGS------------QDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 98 ~~v~~~~~~~~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
..+..++|+|++++++++. .++.|.+||+. +.+..
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~---------------------------------~~~~~ 128 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE---------------------------------TLSRR 128 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT---------------------------------TTEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECC---------------------------------CCcEE
Confidence 2567899999999888875 34555555554 33333
Q ss_pred eeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCC---------
Q psy17863 166 STLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDE--------- 230 (341)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~--------- 230 (341)
..+.. ...+..++++|+++.++++ ++.+.+||+.... .......+.|+|+++.++..+..+
T Consensus 129 ~~~~~---~~~~~~~~~s~dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 204 (337)
T 1pby_B 129 KAFEA---PRQITMLAWARDGSKLYGL-GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYT 204 (337)
T ss_dssp EEEEC---CSSCCCEEECTTSSCEEEE-SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred EEEeC---CCCcceeEECCCCCEEEEe-CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeec
Confidence 22221 1235667788888877777 6778888876532 011011236788887665544332
Q ss_pred ---------------eEEEEecccccee-eeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeee
Q psy17863 231 ---------------CLRLFDKATGELL-EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV 294 (341)
Q Consensus 231 ---------------~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 294 (341)
.|.+||+.+++.. ..+..+...+..+ +++|++++++++ ++.|++||+.+++.+..+.
T Consensus 205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~--~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~--- 277 (337)
T 1pby_B 205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFST--AVNPAKTRAFGA--YNVLESFDLEKNASIKRVP--- 277 (337)
T ss_dssp EBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEE--EECTTSSEEEEE--ESEEEEEETTTTEEEEEEE---
T ss_pred cccccccccccccccceEEEeCCCCCceEeecCCCCCceeeE--EECCCCCEEEEe--CCeEEEEECCCCcCcceec---
Confidence 4689999888764 2233344444445 899999999988 7999999999888877776
Q ss_pred eccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCc
Q psy17863 295 GKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 295 ~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~ 331 (341)
....+.+++|+|++++|++++ ++.|++|++.++....
T Consensus 278 ~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEE
Confidence 335678999999999999989 9999999998765433
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-25 Score=186.83 Aligned_cols=221 Identities=10% Similarity=0.031 Sum_probs=174.2
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCC---eEEEEcCCCcceeeEecCcccceeEEEEecCCCEEE-EecCCCc-
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDK---KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKS- 78 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg---~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~- 78 (341)
...+.+.+|...|.+++|+|||++|++++.++ .|++||+.+++.. .+..|...+.+++|+|||++|+ +++.++.
T Consensus 169 ~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~ 247 (415)
T 2hqs_A 169 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSL 247 (415)
T ss_dssp CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCc
Confidence 35677889999999999999999999999875 9999999988765 5667888999999999999888 6666554
Q ss_pred -EEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecC-CC--eEEEEEecCCCCcCeEEeecCCCceEEEeeccCeE
Q psy17863 79 -VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ-DN--TVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 79 -i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 154 (341)
|++||+.+++. ..+..|...+.+++|+|+++.|++++. ++ .|.+||+.+++
T Consensus 248 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~------------------------ 302 (415)
T 2hqs_A 248 NLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA------------------------ 302 (415)
T ss_dssp EEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC------------------------
T ss_pred eEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC------------------------
Confidence 99999988776 566678889999999999998888775 34 45555554432
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC----CceEEEEccccc-----CCCCeEEEEEccCCCEEEE
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG----NNVKLWTAEEDY-----GQEPIVDACFTRDCQCILT 225 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~ 225 (341)
.. .+. .+...+..++|+|++++++.+.. ..+.+|++.... ....+.+++|+|+|++|++
T Consensus 303 ---------~~-~l~--~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~ 370 (415)
T 2hqs_A 303 ---------PQ-RIT--WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIY 370 (415)
T ss_dssp ---------CE-ECC--CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEE
T ss_pred ---------EE-EEe--cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCCCcCCeEEcCCCCEEEE
Confidence 11 111 12235778999999999887763 479999987643 2237899999999999998
Q ss_pred eecCC---eEEEEeccccceeeeecCcccceeEEEEEeCCCCC
Q psy17863 226 CSTDE---CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS 265 (341)
Q Consensus 226 ~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (341)
++.++ .|++||+. ++....+..|...+..+ +|+|...
T Consensus 371 ~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~--~~~~~~~ 410 (415)
T 2hqs_A 371 SSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFP--AWSPYLH 410 (415)
T ss_dssp EEEETTEEEEEEEETT-SCCEEECCCSSSEEEEE--EECCCCC
T ss_pred EEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCC--ccccccc
Confidence 88877 79999987 56677888898888877 8888643
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-24 Score=177.56 Aligned_cols=249 Identities=10% Similarity=0.110 Sum_probs=165.1
Q ss_pred eeeCCcEEEEEEccCCCEEEEEeC---CCeEEEEcCCCcc--eeeEecCcccceeEEEEecCCCEEEEec-CCCcEEEEE
Q psy17863 10 DCKQGAIRAVRFNVDGSYCLTCGS---DKKIKLWNPYRNL--LLKTYGGHAHEVNDATAACDSSQIASGA-SDKSVILWE 83 (341)
Q Consensus 10 ~~h~~~v~~~~~~~~~~~l~t~~~---dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~ 83 (341)
..+...+..++|+|||+ |++++. ++.|.+|++.+++ .+..+..+...+..++|+|++++|++++ .++.|.+|+
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 44667788999999999 555544 6899999997665 4444455777899999999999888887 679999999
Q ss_pred CCC-Cc--eeeeecc---------cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeecc
Q psy17863 84 VTT-GQ--PVRRWRE---------HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSD 151 (341)
Q Consensus 84 ~~~-~~--~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (341)
+.. ++ .+..+.. +...+.+++|+|+++++++...++.|.+|++....
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g--------------------- 173 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG--------------------- 173 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS---------------------
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC---------------------
Confidence 963 32 2222221 12348889999999966666678889888887211
Q ss_pred CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEE-eecCC
Q psy17863 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILT-CSTDE 230 (341)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~ 230 (341)
.+.. ...+.. . .......++|+|||+++++ ...++
T Consensus 174 -~~~~--------~~~~~~--~---------------------------------~g~~p~~~~~spdg~~l~v~~~~~~ 209 (347)
T 3hfq_A 174 -QLSE--------QSVLTM--E---------------------------------AGFGPRHLVFSPDGQYAFLAGELSS 209 (347)
T ss_dssp -CEEE--------EEEEEC--C---------------------------------TTCCEEEEEECTTSSEEEEEETTTT
T ss_pred -cEEE--------eeeEEc--C---------------------------------CCCCCceEEECCCCCEEEEEeCCCC
Confidence 0000 000000 0 0123445677777775554 45678
Q ss_pred eEEEEeccc--cce--eeeecCcccc----eeEEEEEeCCCCCEEE-EecCCCcEEEEeeeCC---CceEEEEeeeeccc
Q psy17863 231 CLRLFDKAT--GEL--LEEYKGHKSG----DFRIECCLDSKDSQIF-CGSSDGKIYKWQLVDS---SQISTLIHSVGKAV 298 (341)
Q Consensus 231 ~i~i~d~~~--~~~--~~~~~~~~~~----~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~ 298 (341)
.+.+|++.. ++. +..+...... .....++++|+|++|+ +...++.|.+|++... +.+..+. .+...
T Consensus 210 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~ 287 (347)
T 3hfq_A 210 QIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS--TEGDF 287 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE--CSSSC
T ss_pred EEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe--cCCCC
Confidence 888988763 332 2223222211 1223348999999874 5566899999998733 2333333 44556
Q ss_pred eEEEEEcCCCcEEEEeC--CCcEEEEEccc
Q psy17863 299 VNSLCSHPTRKHIMSAC--GNNVKLWTAEE 326 (341)
Q Consensus 299 v~~~~~~~~~~~l~~~~--d~~i~vw~~~~ 326 (341)
+..++|+|||++|++++ ++.|.+|+++.
T Consensus 288 ~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 288 PRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp CCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred cCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 88999999999888877 58999997754
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-24 Score=177.77 Aligned_cols=261 Identities=9% Similarity=0.067 Sum_probs=179.3
Q ss_pred eeCCcEEEEEEccCCCEEEEEeCC-CeEEEEcCC--Ccc--eeeEecCcccceeEEEEecCCCEEEEecC-CCcEEEEEC
Q psy17863 11 CKQGAIRAVRFNVDGSYCLTCGSD-KKIKLWNPY--RNL--LLKTYGGHAHEVNDATAACDSSQIASGAS-DKSVILWEV 84 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~t~~~d-g~i~iw~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~ 84 (341)
.|...+.+++|+|+|++|++++.+ +.|.+|++. +++ .+..+..+. .+..++|+|++++|++++. ++.|.+||+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 477889999999999999988876 999999987 444 344555444 7899999999998876654 889999999
Q ss_pred C---CCceeeeecccCccEEEEEEcCCCcEEEEec-CCCeEEEEEecC-CCCcCeEEeecCCCceEEEeeccCeEEEEEc
Q psy17863 85 T---TGQPVRRWREHASKVTCVKFNEDSSVVISGS-QDNTVMMWDVKS-RSHHPIQCCLDSKDSQIFCGSSDGKIYKWQL 159 (341)
Q Consensus 85 ~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~ 159 (341)
. ..+....+.. ...+.+++|+|+++++++++ .++.|.+||+.+ ++...... ..+..
T Consensus 114 ~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~------------------~~~~~ 174 (343)
T 1ri6_A 114 EDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP------------------AEVTT 174 (343)
T ss_dssp ETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE------------------EEEEC
T ss_pred CCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecc------------------ccccc
Confidence 4 3344445443 34588999999999888777 899999999976 32100000 00000
Q ss_pred cCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc-----------------CCCCeEEEEEccCC
Q psy17863 160 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY-----------------GQEPIVDACFTRDC 220 (341)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~-----------------~~~~i~~~~~~~~~ 220 (341)
. ....+..++++|++++++++. ++.+.+|++.... ....+..++|+|++
T Consensus 175 ~------------~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 175 V------------EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp S------------TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred C------------CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence 0 112356788888888665443 4778888874311 12345679999999
Q ss_pred CEEEEe-ecCCeEEEEecc----ccceeeeecCcccceeEEEEEeCCCCCEEEEec-CCCcEEEEeee--CCCc--eEEE
Q psy17863 221 QCILTC-STDECLRLFDKA----TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLV--DSSQ--ISTL 290 (341)
Q Consensus 221 ~~l~~~-~~d~~i~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~~~~--~~~~ 290 (341)
++|+++ ..++.|.+||+. ..+.+..+..+.. +..+ +++|++++|++++ .++.|.+|++. +++. +..+
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~--~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~ 319 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGF--NVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRY 319 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCE--EECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEE
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceE--EECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccc
Confidence 888754 478999999998 2344555554443 4555 8999999888777 68999999765 4432 2223
Q ss_pred EeeeeccceEEEEEcCCCc
Q psy17863 291 IHSVGKAVVNSLCSHPTRK 309 (341)
Q Consensus 291 ~~~~~~~~v~~~~~~~~~~ 309 (341)
. ......+++|.|+.+
T Consensus 320 ~---~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 320 A---VGQGPMWVVVNAHEG 335 (343)
T ss_dssp E---CSSSCCEEEEEEEC-
T ss_pred c---cCCCCeeEEEEcccC
Confidence 2 234566788877644
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.6e-25 Score=196.40 Aligned_cols=299 Identities=11% Similarity=0.036 Sum_probs=201.8
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC-----Cc
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT-----GQ 88 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~ 88 (341)
..|.+++|+|| +.++.+. ++.|++||+.+++... +..+...+.+++|+|||++|+++ .++.|++|++.+ ++
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 56999999999 6666654 6999999998876544 44467789999999999999985 679999999998 77
Q ss_pred eeeeecccCcc--------------EEEEEEcCCCcEEEEec---------------------------------CCCeE
Q psy17863 89 PVRRWREHASK--------------VTCVKFNEDSSVVISGS---------------------------------QDNTV 121 (341)
Q Consensus 89 ~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~---------------------------------~d~~i 121 (341)
.......+... +.+++|+|||++|++++ .+..|
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 66554444333 47899999999999987 44789
Q ss_pred EEEEecCCCC----------cCeEEeec-CCCceEEEeeccC-----eEEEEEccCCcceeeeEeeecCc---eEEEEEE
Q psy17863 122 MMWDVKSRSH----------HPIQCCLD-SKDSQIFCGSSDG-----KIYKWQLVDSSQISTLIHSVGKA---VVNSLCS 182 (341)
Q Consensus 122 ~iwd~~~~~~----------~~~~~~~~-~~~~~~~~~~~~g-----~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~ 182 (341)
.+||+.+++. ..+..+.+ +++..+++++.++ .|.+||+.+++....+....... .+..++|
T Consensus 238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~ 317 (706)
T 2z3z_A 238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF 317 (706)
T ss_dssp EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee
Confidence 9999876541 12233444 4455677777665 89999999884444443322222 2357899
Q ss_pred CC--CCceEEEeCC-CceEEEEccccc--------CCCCeEE-EEEccCCCEEEEeecC-C----eEEEEeccccceeee
Q psy17863 183 HP--TRKHIMSACG-NNVKLWTAEEDY--------GQEPIVD-ACFTRDCQCILTCSTD-E----CLRLFDKATGELLEE 245 (341)
Q Consensus 183 ~~--~~~~~~~~~~-~~i~~~~~~~~~--------~~~~i~~-~~~~~~~~~l~~~~~d-~----~i~i~d~~~~~~~~~ 245 (341)
+| ++++++++.. +.+++|.++... +...+.. ++|+|+++.|+.++.+ + .|..||+.+++ ...
T Consensus 318 sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~ 396 (706)
T 2z3z_A 318 LPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKD 396 (706)
T ss_dssp CTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEE
T ss_pred ecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-cee
Confidence 99 9998887764 678888765211 3445666 7999999987665544 3 67777777665 334
Q ss_pred ecCcccceeEEEEEeCCCCCEEEEecCC----CcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCC--cE
Q psy17863 246 YKGHKSGDFRIECCLDSKDSQIFCGSSD----GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGN--NV 319 (341)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~--~i 319 (341)
+. +...+..+ +|+|++++++....+ +.|++||+.+++ ...+. +..++....+.+.....+...|| .+
T Consensus 397 l~-~~~~~~~~--~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~ 469 (706)
T 2z3z_A 397 LT-PESGMHRT--QLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS-HTLLE---AKNPDTGYAMPEIRTGTIMAADGQTPL 469 (706)
T ss_dssp SC-CSSSEEEE--EECTTSSEEEEEEECSSCSCEEEEEESSSCE-EEEEE---CC------CCCCEEEEEEECTTSSSEE
T ss_pred cc-CCCceEEE--EECCCCCEEEEEecCCCCCcEEEEEECCCCe-Eeecc---ccchhhhcCCCCcEEEEEEcCCCCEEE
Confidence 43 45556555 899999988876443 569999998876 33332 33345444444333333333355 56
Q ss_pred EEEEc
Q psy17863 320 KLWTA 324 (341)
Q Consensus 320 ~vw~~ 324 (341)
..|-.
T Consensus 470 ~~~~~ 474 (706)
T 2z3z_A 470 YYKLT 474 (706)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55544
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=200.78 Aligned_cols=264 Identities=11% Similarity=0.052 Sum_probs=196.2
Q ss_pred ccceeEEEEecCCCEEEEecC-CC-----cEEEEECCCCceeeeecccC------------------------ccEEEEE
Q psy17863 55 AHEVNDATAACDSSQIASGAS-DK-----SVILWEVTTGQPVRRWREHA------------------------SKVTCVK 104 (341)
Q Consensus 55 ~~~v~~~~~~~~~~~l~~~~~-dg-----~i~iw~~~~~~~~~~~~~~~------------------------~~v~~~~ 104 (341)
...+.+++|+|||++|++++. |+ .|++||+.+++....+..+. ..+.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456899999999999999988 88 89999999998776665443 2378999
Q ss_pred EcCCCcEEEEecCCCeEEEEEecCC---CC-------cCeEEeecCCCc-eEEEeeccCeEEEEEccCCcceeeeEeeec
Q psy17863 105 FNEDSSVVISGSQDNTVMMWDVKSR---SH-------HPIQCCLDSKDS-QIFCGSSDGKIYKWQLVDSSQISTLIHSVG 173 (341)
Q Consensus 105 ~~~~~~~l~~~~~d~~i~iwd~~~~---~~-------~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 173 (341)
|+|||++|++++. +.|.+||+.++ .. ..+....+++++ .++.++ ++.|++||+.+++..........
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 9999999999886 99999999887 42 223444455555 455554 67999999988665443322111
Q ss_pred C--------------ceEEEEEECCCCceEEEeCC-C---------------------------------ceEEEEccc-
Q psy17863 174 K--------------AVVNSLCSHPTRKHIMSACG-N---------------------------------NVKLWTAEE- 204 (341)
Q Consensus 174 ~--------------~~~~~~~~~~~~~~~~~~~~-~---------------------------------~i~~~~~~~- 204 (341)
. ..+..++|+|+|+.|+.+.. + .+.+||+..
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~ 273 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQ 273 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTT
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCC
Confidence 0 01467999999998888742 2 678888766
Q ss_pred cc---------CCCCeEEEEEccCCCEEEEeec-----CCeEEEEeccccceeeeecCccc----ceeEEEEEeCCCCCE
Q psy17863 205 DY---------GQEPIVDACFTRDCQCILTCST-----DECLRLFDKATGELLEEYKGHKS----GDFRIECCLDSKDSQ 266 (341)
Q Consensus 205 ~~---------~~~~i~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 266 (341)
.. +...+..++| |||++|++++. +..|++||+.+++....+..+.. .+..+ +|+|+|++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~--~~spdg~~ 350 (741)
T 2ecf_A 274 AQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSL--RFLDDGSI 350 (741)
T ss_dssp CCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCC--EECTTSCE
T ss_pred CceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCce--EECCCCeE
Confidence 32 3456889999 99999987654 56799999999887766655442 22334 89999999
Q ss_pred EEEecCCCcEEEEeee-CCCceEEEEeeeeccceEEE-EEcCCCcEEEE-eC-CC--cEEEEEccc
Q psy17863 267 IFCGSSDGKIYKWQLV-DSSQISTLIHSVGKAVVNSL-CSHPTRKHIMS-AC-GN--NVKLWTAEE 326 (341)
Q Consensus 267 l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~-~~-d~--~i~vw~~~~ 326 (341)
+++++.||.++||.+. +++ ...+. .+...+..+ .|+|+++.|+. ++ ++ .++||+++.
T Consensus 351 ~~~~~~~g~~~l~~~~~~~~-~~~l~--~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 351 LWSSERTGFQHLYRIDSKGK-AAALT--HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EEEECTTSSCEEEEECSSSC-EEESC--CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred EEEecCCCccEEEEEcCCCC-eeeee--ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 9999999988888876 444 55665 567778887 59999987754 44 55 899999864
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-24 Score=178.15 Aligned_cols=265 Identities=9% Similarity=0.075 Sum_probs=193.4
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcc-cceeEEEEecCCCEEE-EecCCCcEEEEECCCCceeeeecc
Q psy17863 18 AVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA-HEVNDATAACDSSQIA-SGASDKSVILWEVTTGQPVRRWRE 95 (341)
Q Consensus 18 ~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~ 95 (341)
.++++++++++++++.++.|.+||..+++.+..+..+. ..+..++|+|++++++ +...++.|.+||+.+++.+..+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45788899999999999999999999999888876443 2578899999998655 556789999999999988776653
Q ss_pred cC------ccEEEEEEcCCCcEEEEecCC------------CeEEEEEecCCCC----------cCeEEeecCCCceEEE
Q psy17863 96 HA------SKVTCVKFNEDSSVVISGSQD------------NTVMMWDVKSRSH----------HPIQCCLDSKDSQIFC 147 (341)
Q Consensus 96 ~~------~~v~~~~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~----------~~~~~~~~~~~~~~~~ 147 (341)
+. ..+..++|+|+++++++++.+ +.|.+||+.+++. ..+..+...+++.+++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~ 163 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV 163 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEE
Confidence 22 237789999999999998865 8999999987321 1122222344444665
Q ss_pred eeccCeEEEEEccCCcceeeeEeeec----------------------CceEEEEEECCCCce-----------E-EEeC
Q psy17863 148 GSSDGKIYKWQLVDSSQISTLIHSVG----------------------KAVVNSLCSHPTRKH-----------I-MSAC 193 (341)
Q Consensus 148 ~~~~g~i~~~d~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~-----------~-~~~~ 193 (341)
++ +.|.+||..+++....+..... ......+++++++.. + +-..
T Consensus 164 ~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 241 (349)
T 1jmx_B 164 AG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 241 (349)
T ss_dssp ES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred cc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence 43 4499999988876655432210 003445666655421 1 1222
Q ss_pred CCceEEEEcccccCCCCeEEEEEcc-CCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecC
Q psy17863 194 GNNVKLWTAEEDYGQEPIVDACFTR-DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS 272 (341)
Q Consensus 194 ~~~i~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (341)
.+.+.+++... ....+..++++| ++++++++ ++.|.+||+.+++.+..+.... .+..+ +++|++++|++++.
T Consensus 242 ~~~~~~~~~~~--~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~-~~~~~--~~s~dg~~l~~~~~ 314 (349)
T 1jmx_B 242 TGKTHTQEFAD--LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH-TYYCV--AFDKKGDKLYLGGT 314 (349)
T ss_dssp TCCEEEEEEEE--CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS-CCCEE--EECSSSSCEEEESB
T ss_pred CCcEEeccccc--CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC-Cccce--EECCCCCEEEEecC
Confidence 46677777743 456788999999 99999888 8899999999998877776433 34455 89999999888888
Q ss_pred CCcEEEEeeeCCCceEEEE
Q psy17863 273 DGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 273 dg~i~iwd~~~~~~~~~~~ 291 (341)
++.|++||+.+++.+..+.
T Consensus 315 ~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 315 FNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp SSEEEEEETTTTEEEEEEE
T ss_pred CCeEEEEeccccceeeeee
Confidence 9999999999998888776
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-24 Score=172.99 Aligned_cols=249 Identities=8% Similarity=0.092 Sum_probs=177.4
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeC-CCeEEEEcCCCcce-eeEecCcccceeEEEEecCCCEEEEecCCC---c
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGS-DKKIKLWNPYRNLL-LKTYGGHAHEVNDATAACDSSQIASGASDK---S 78 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~-dg~i~iw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~ 78 (341)
+.+..+..+...+ +++|+|+|+++++++. ++.|.+||..+++. ...+..+..+..+++|+|++++++++..++ .
T Consensus 31 ~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 109 (331)
T 3u4y_A 31 EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFN 109 (331)
T ss_dssp CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCE
T ss_pred ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCccc
Confidence 4555666666777 9999999997776665 88999999999887 777776766666699999999999665553 8
Q ss_pred EEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEe-cCCCe-EEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEE
Q psy17863 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISG-SQDNT-VMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYK 156 (341)
Q Consensus 79 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 156 (341)
|.+||+.+++.+..+..+ ....+++|+|++++++++ ..++. +.+|++..... +
T Consensus 110 i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~----------------------~-- 164 (331)
T 3u4y_A 110 MQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGV----------------------L-- 164 (331)
T ss_dssp EEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCC----------------------E--
T ss_pred EEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCc----------------------E--
Confidence 999999999888877643 456899999999866555 44577 99999875320 0
Q ss_pred EEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc---------CCCCeEEEEEccCCCEEEE
Q psy17863 157 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY---------GQEPIVDACFTRDCQCILT 225 (341)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~ 225 (341)
.+.. . ..+ .....+..++++|++++++++. ++.+.+|++.... ....+..++|+|+|+++++
T Consensus 165 ~~~~-~---~~~---~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 237 (331)
T 3u4y_A 165 FDTG-Q---EFI---SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYV 237 (331)
T ss_dssp EEEE-E---EEE---CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEE
T ss_pred eecC-C---ccc---cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEE
Confidence 0000 0 000 1223468899999999665554 5789999987543 2345678999999997765
Q ss_pred ee-cCCeEEEEeccccce--eeeecCc----ccceeE-EEEEeCCCCCEEEEe-cCCCcEEEEeeeCCC
Q psy17863 226 CS-TDECLRLFDKATGEL--LEEYKGH----KSGDFR-IECCLDSKDSQIFCG-SSDGKIYKWQLVDSS 285 (341)
Q Consensus 226 ~~-~d~~i~i~d~~~~~~--~~~~~~~----~~~~~~-~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~ 285 (341)
++ .++.|.+||+.+++. +..+..+ ...... ..++|+|++++|+++ ..++.|.+||+....
T Consensus 238 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 238 LTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp ECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred EEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 54 577899999998876 3333322 222211 123899999987655 456799999986543
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-25 Score=193.81 Aligned_cols=261 Identities=11% Similarity=0.045 Sum_probs=186.2
Q ss_pred eCCcEEEEEEccCCCEEEEEeC-CCeEEEEcCCCcceeeEecCcc-cceeEEEEecCCCEEEEecC---CCcEEEEECCC
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGS-DKKIKLWNPYRNLLLKTYGGHA-HEVNDATAACDSSQIASGAS---DKSVILWEVTT 86 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~iw~~~~ 86 (341)
+..+|.+++|+|||++||+++. ||+++||++.+++. ..+..|. ..+..++|+|| +.+++++. +....+|.+..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 3578999999999999999887 99999999865554 4455455 68999999999 77777664 45566665533
Q ss_pred ---CceeeeecccCccEEEEEEcCCCc--EEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccC
Q psy17863 87 ---GQPVRRWREHASKVTCVKFNEDSS--VVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVD 161 (341)
Q Consensus 87 ---~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~ 161 (341)
+... .+.... .+...+|+|+++ .+++++.+ .+.+||+.+++
T Consensus 98 ~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~------------------------------- 143 (582)
T 3o4h_A 98 SRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATED-RVALYALDGGG------------------------------- 143 (582)
T ss_dssp TSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSS-CEEEEEEETTE-------------------------------
T ss_pred cCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCC-CceEEEccCCc-------------------------------
Confidence 2322 333222 234567777765 34444444 44488776543
Q ss_pred CcceeeeEeeecCceEEEEEECCCCceEEEeC-C----CceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCC
Q psy17863 162 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G----NNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDE 230 (341)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~ 230 (341)
... +... .. .+++++|+|+.++.+. + ..|++||+.+.. +...+..++|+|||+.|+++..++
T Consensus 144 --~~~-l~~~--~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~ 216 (582)
T 3o4h_A 144 --LRE-LARL--PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAR 216 (582)
T ss_dssp --EEE-EEEE--SS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSS
T ss_pred --EEE-eecC--CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCC
Confidence 111 1111 11 6788999999998654 2 568899876543 556789999999999999888888
Q ss_pred --eEEEEeccccceeeeecCcccceeEEEEE--------eCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceE
Q psy17863 231 --CLRLFDKATGELLEEYKGHKSGDFRIECC--------LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN 300 (341)
Q Consensus 231 --~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 300 (341)
.|++||+.+++.. .+.+|...+..+ + |+|||.++++++.+|.+++|++ ++... ...+.+.
T Consensus 217 ~~~i~~~d~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~-----~~~~~v~ 286 (582)
T 3o4h_A 217 EARLVTVDPRDGSVE-DLELPSKDFSSY--RPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE-----APQGNHG 286 (582)
T ss_dssp CEEEEEECTTTCCEE-ECCCSCSHHHHH--CCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC-----CCSSEEE
T ss_pred eeEEEEEcCCCCcEE-EccCCCcChhhh--hhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec-----cCCCceE
Confidence 8999999988877 777776655544 4 9999988999999999999998 55433 2336788
Q ss_pred EEEEcCCCcEEEEeC-CC---cEEEEEccc
Q psy17863 301 SLCSHPTRKHIMSAC-GN---NVKLWTAEE 326 (341)
Q Consensus 301 ~~~~~~~~~~l~~~~-d~---~i~vw~~~~ 326 (341)
+++|+ +++++++++ +. .+.+|+..+
T Consensus 287 ~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 287 RVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 99999 999998887 64 366666543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-24 Score=173.17 Aligned_cols=230 Identities=13% Similarity=0.070 Sum_probs=170.0
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC-cceeeEecCc-ccceeEEEEecCCCEEEEec--CCCcEEE
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR-NLLLKTYGGH-AHEVNDATAACDSSQIASGA--SDKSVIL 81 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~dg~i~i 81 (341)
...+..|...|.+++|+|+|++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|++++|++++ .++...+
T Consensus 34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l 112 (297)
T 2ojh_A 34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAI 112 (297)
T ss_dssp EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEE
T ss_pred eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceE
Confidence 446677999999999999999999987 88999999998 7777666555 36789999999999999988 3345555
Q ss_pred EE--CCCCceeeeecccCccEEEEEEcCCCcEEE-EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 82 WE--VTTGQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 82 w~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
|. ..+++ ...+..+ ..+..++|+|+++.|+ ++..++.+++|+++.....
T Consensus 113 ~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-------------------------- 164 (297)
T 2ojh_A 113 YLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-------------------------- 164 (297)
T ss_dssp EEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC--------------------------
T ss_pred EEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCc--------------------------
Confidence 54 44444 3444433 3488999999999877 7778888888887532210
Q ss_pred ccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc--------CCCCeEEEEEccCCCEEEEeec
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY--------GQEPIVDACFTRDCQCILTCST 228 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~ 228 (341)
...+ ......+..++|+|+++.++... ++.+.+|++.... +...+..++|+|++++|++++.
T Consensus 165 ------~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 236 (297)
T 2ojh_A 165 ------ETRL--THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSY 236 (297)
T ss_dssp ------EEEC--CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEE
T ss_pred ------ceEc--ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEc
Confidence 0000 11234578899999998777654 5778888876321 4557888999999999988876
Q ss_pred C-----------CeEEEEeccccce--eeeecCcccceeEEEEEeCCCCCEEEEecCCC
Q psy17863 229 D-----------ECLRLFDKATGEL--LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG 274 (341)
Q Consensus 229 d-----------~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 274 (341)
+ +.|++||+.+++. +..+.+|...+..+ +|+|++++|++++.+.
T Consensus 237 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 237 DADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSP--NWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSC--CBCTTSSEEEEEEECC
T ss_pred CCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccc--eECCCCCEEEEEEecc
Confidence 5 5699999988765 33444677777766 8999999998877653
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.8e-23 Score=169.23 Aligned_cols=275 Identities=9% Similarity=0.121 Sum_probs=180.7
Q ss_pred cCCCEEEEEe----CCCeEEEEcC--CCcceeeEecCcccceeEEEEecCCCEEEEecCC----CcEEEEECCC--Cce-
Q psy17863 23 VDGSYCLTCG----SDKKIKLWNP--YRNLLLKTYGGHAHEVNDATAACDSSQIASGASD----KSVILWEVTT--GQP- 89 (341)
Q Consensus 23 ~~~~~l~t~~----~dg~i~iw~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iw~~~~--~~~- 89 (341)
+...+++.|+ .++.|.+|.+ .+++.......+......++|+|++++|++++.+ +.|.+|++.. ++.
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 3445666664 3568999865 4454433222266778889999999999998875 7999999865 432
Q ss_pred -eeeecccCccEEEEEEcCCCcEEEEec-CCCeEEEEEecCCCC-cCeEEeecCCCceEEEeeccCeEEEEEccCCccee
Q psy17863 90 -VRRWREHASKVTCVKFNEDSSVVISGS-QDNTVMMWDVKSRSH-HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 166 (341)
Q Consensus 90 -~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~ 166 (341)
+.....+......+++ ++++|++++ .++.+.+|++..... ......... ......
T Consensus 91 ~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~-------------------~g~~~~- 148 (361)
T 3scy_A 91 LLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEF-------------------KGSGPD- 148 (361)
T ss_dssp EEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEEC-------------------CCCCSC-
T ss_pred EeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEc-------------------cCCCCC-
Confidence 3333445566777888 677666665 578999999875321 010000000 000000
Q ss_pred eeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc--------------------CCCCeEEEEEccCCCEEE
Q psy17863 167 TLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY--------------------GQEPIVDACFTRDCQCIL 224 (341)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~--------------------~~~~i~~~~~~~~~~~l~ 224 (341)
........+.+++++|++++++++. ++.+.+|++.... .......++|+|+|++++
T Consensus 149 --~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 226 (361)
T 3scy_A 149 --KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAY 226 (361)
T ss_dssp --TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred --ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEE
Confidence 0000123468899999999776654 4789999876432 234567899999999887
Q ss_pred Eee-cCCeEEEEeccccce--eeeec---CcccceeEEEEEeCCCCCEEEEecC--CCcEEEEeee--CCCc--eEEEEe
Q psy17863 225 TCS-TDECLRLFDKATGEL--LEEYK---GHKSGDFRIECCLDSKDSQIFCGSS--DGKIYKWQLV--DSSQ--ISTLIH 292 (341)
Q Consensus 225 ~~~-~d~~i~i~d~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~--~~~~--~~~~~~ 292 (341)
+++ .++.|.+|++.+++. +..+. .+......+ +++|+|++|+++.. ++.|.+|++. +++. +..+.
T Consensus 227 v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i--~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~- 303 (361)
T 3scy_A 227 LINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDI--HLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL- 303 (361)
T ss_dssp EEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEE--EECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-
T ss_pred EEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccE--EECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-
Confidence 777 689999999987654 22232 222233344 89999999876655 4899999986 3442 22333
Q ss_pred eeeccceEEEEEcCCCcEEEEeC--CCcEEEEEccc
Q psy17863 293 SVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEE 326 (341)
Q Consensus 293 ~~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~ 326 (341)
. ...+..++|+|||++|++++ ++.|.+|+++.
T Consensus 304 -~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 304 -T-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp -C-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred -C-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 2 45788999999999888876 78999987763
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-24 Score=180.71 Aligned_cols=306 Identities=12% Similarity=0.076 Sum_probs=199.3
Q ss_pred eeeeEEeeeCCcEEE-----EEEccCCCEEEEEeC-CC--eEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC
Q psy17863 4 TCVQTIDCKQGAIRA-----VRFNVDGSYCLTCGS-DK--KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS 75 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~-----~~~~~~~~~l~t~~~-dg--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 75 (341)
..+..+..|...... .+|+|||++|+.++. +| .|.+||+.+++.......+...+..+.|+||++.|+.++.
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~ 100 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD 100 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET
T ss_pred cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC
Confidence 345667777766666 889999999998887 66 4888899888877766667666667889999999999999
Q ss_pred CCcEEEEECCCCceeeeecccCccEEEEE--EcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCe
Q psy17863 76 DKSVILWEVTTGQPVRRWREHASKVTCVK--FNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGK 153 (341)
Q Consensus 76 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 153 (341)
++.|++||+.+++....+..+...+.... +++++.+++....++ ....+..... .-...+....+..
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~---------~~~~~~~~~~--~~~~~~~~~~~~~ 169 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRR---------EDWVPLTDWK--KFHEFYFTKPCCR 169 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEG---------GGCCCCCSHH--HHHHHGGGCCCEE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccC---------cccccccccc--hhhhhhccCCcce
Confidence 99999999999987776666666554444 478888776532110 0000000000 0000011223467
Q ss_pred EEEEEccCCcceeeeEeeecCceEEEEEECC-CCceEEEeCC-------CceEEEEccccc------CC--CCeEEEEEc
Q psy17863 154 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHP-TRKHIMSACG-------NNVKLWTAEEDY------GQ--EPIVDACFT 217 (341)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~i~~~~~~~~~------~~--~~i~~~~~~ 217 (341)
|.+||+.+++..... . ....+..+.|+| +++.++.... ..+.+++..... +. ..+....|+
T Consensus 170 l~~~d~~~g~~~~l~-~--~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s 246 (388)
T 3pe7_A 170 LMRVDLKTGESTVIL-Q--ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWV 246 (388)
T ss_dssp EEEEETTTCCEEEEE-E--ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEEC
T ss_pred EEEEECCCCceEEee-c--CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceEC
Confidence 888888876543332 2 234578999999 9998876553 257777765432 22 247788999
Q ss_pred cCCCEEEEeec-C----CeEEEEeccccce--eeeecCccccee-EEEEEeCCCCCEEEEe---------cCCCcEEEEe
Q psy17863 218 RDCQCILTCST-D----ECLRLFDKATGEL--LEEYKGHKSGDF-RIECCLDSKDSQIFCG---------SSDGKIYKWQ 280 (341)
Q Consensus 218 ~~~~~l~~~~~-d----~~i~i~d~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~l~~~---------~~dg~i~iwd 280 (341)
|||+.|+..+. + ..|++||+.+++. +..+.++..... .-...|+|+|+.|+.. ..+..|++||
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 247 PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence 99997765443 2 2499999998864 333333110000 0001588999887754 4567899999
Q ss_pred eeCCCceEEEEeeeecc-----------ceEEEEEcCCCcEEEEeC--CCcEEEEEccc
Q psy17863 281 LVDSSQISTLIHSVGKA-----------VVNSLCSHPTRKHIMSAC--GNNVKLWTAEE 326 (341)
Q Consensus 281 ~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~ 326 (341)
+.+++. ..+. .+.. .+.+++|+|||+.|+..+ ++...||.++-
T Consensus 327 ~~~~~~-~~l~--~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 327 MKNGTQ-HRVA--RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp TTTTEE-EEEE--ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred ccCCce-EEec--cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 887654 4444 3443 578899999999888766 77777776653
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-24 Score=194.35 Aligned_cols=304 Identities=8% Similarity=0.031 Sum_probs=206.7
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCccc---ceeEEEEecCCCEEEEecC---------CCcEEEEECC
Q psy17863 18 AVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH---EVNDATAACDSSQIASGAS---------DKSVILWEVT 85 (341)
Q Consensus 18 ~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------dg~i~iw~~~ 85 (341)
+++|+|||+++++ +.|+.|++||+.+++....+..+.. .+.+++|+|||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 7899999965555 5699999999999988777765544 3999999999999998876 7899999999
Q ss_pred CCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcC---------------------------eEEee
Q psy17863 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP---------------------------IQCCL 138 (341)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---------------------------~~~~~ 138 (341)
+++.+.... ....+..++|+|||+.|+.+. ++.|++|++.+++... .....
T Consensus 99 ~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w 176 (719)
T 1z68_A 99 NGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW 176 (719)
T ss_dssp TTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred CCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence 887631111 124688899999999999885 7899999997654211 12334
Q ss_pred cCCCceEEEeeccC----------------------------------eEEEEEccCCcce--eeeEe----eecCceEE
Q psy17863 139 DSKDSQIFCGSSDG----------------------------------KIYKWQLVDSSQI--STLIH----SVGKAVVN 178 (341)
Q Consensus 139 ~~~~~~~~~~~~~g----------------------------------~i~~~d~~~~~~~--~~~~~----~~~~~~~~ 178 (341)
.+++..|+.++.+. .|.+||+.+++.. ..+.. ..+...+.
T Consensus 177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (719)
T 1z68_A 177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS 256 (719)
T ss_dssp CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence 44556777776552 7889999887643 11110 12445689
Q ss_pred EEEECCCCceEEEeCC-----CceEEEE----cccc-----------cCCCCeE-----EEEEccCCCEEEE--eecCC-
Q psy17863 179 SLCSHPTRKHIMSACG-----NNVKLWT----AEED-----------YGQEPIV-----DACFTRDCQCILT--CSTDE- 230 (341)
Q Consensus 179 ~~~~~~~~~~~~~~~~-----~~i~~~~----~~~~-----------~~~~~i~-----~~~~~~~~~~l~~--~~~d~- 230 (341)
.++|+|++++++...+ ..|.+|+ ..+. .+...+. .+.|+|||+.++. ...+|
T Consensus 257 ~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~ 336 (719)
T 1z68_A 257 WLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGY 336 (719)
T ss_dssp EEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSC
T ss_pred EeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCc
Confidence 9999999887766432 2488888 5432 1233444 7899999996654 44444
Q ss_pred -eEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecC-----CCcEEEEeeeC--CC-ceEEEEe--eeeccce
Q psy17863 231 -CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS-----DGKIYKWQLVD--SS-QISTLIH--SVGKAVV 299 (341)
Q Consensus 231 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~--~~-~~~~~~~--~~~~~~v 299 (341)
.|.+||+.+++ ...+..+...+..+ .++ +++.++..+. ++..++|.+.. +. ....+.. .++...+
T Consensus 337 ~~l~~~~~~~~~-~~~lt~~~~~v~~~--~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~ 412 (719)
T 1z68_A 337 KHIHYIKDTVEN-AIQITSGKWEAINI--FRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQY 412 (719)
T ss_dssp EEEEEESSCSTT-CEECSCSSSCEEEE--EEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCB
T ss_pred eEEEEEECCCCc-eEecccCceEEEEE--EEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCce
Confidence 57778887665 44555555555554 344 6666665554 48899998865 32 1233320 0145678
Q ss_pred EEEEEcCCCcEEEEe-C-C--CcEEEEEccccc
Q psy17863 300 NSLCSHPTRKHIMSA-C-G--NNVKLWTAEEDY 328 (341)
Q Consensus 300 ~~~~~~~~~~~l~~~-~-d--~~i~vw~~~~~~ 328 (341)
..+.|+|++++++.. + . ..+.+|++.++.
T Consensus 413 ~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 413 YTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp EEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred EEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence 889999999877743 3 2 468888876543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.93 E-value=9.3e-25 Score=197.04 Aligned_cols=267 Identities=14% Similarity=0.099 Sum_probs=188.2
Q ss_pred ceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCc---cEEEEEEcCCCcEEEEecCC---------CeEEEE
Q psy17863 57 EVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHAS---KVTCVKFNEDSSVVISGSQD---------NTVMMW 124 (341)
Q Consensus 57 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------~~i~iw 124 (341)
.+.+++|+|||+++++ +.||+|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 4678899999997766 7899999999999988877776664 48999999999999998764 788899
Q ss_pred EecCCCCcC----------eEEeecCCCc-eEEEeeccCeEEEEEccCCcceeeeEeeecC----------------ceE
Q psy17863 125 DVKSRSHHP----------IQCCLDSKDS-QIFCGSSDGKIYKWQLVDSSQISTLIHSVGK----------------AVV 177 (341)
Q Consensus 125 d~~~~~~~~----------~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~----------------~~~ 177 (341)
|+.+++... +....+++++ .++.++. +.|++||+.+++........... ..+
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 998765311 2233344444 6666654 89999999887765443322111 123
Q ss_pred EEEEECCCCceEEEeCC-----------------------------------CceEEEEcccccC-------------CC
Q psy17863 178 NSLCSHPTRKHIMSACG-----------------------------------NNVKLWTAEEDYG-------------QE 209 (341)
Q Consensus 178 ~~~~~~~~~~~~~~~~~-----------------------------------~~i~~~~~~~~~~-------------~~ 209 (341)
..++|+|+|+.|+.+.. ..+.+||+..... ..
T Consensus 176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 78999999999888752 1688999876541 34
Q ss_pred CeEEEEEccCCCEEEEeec----CCeEEEEeccccceeeeecCc-ccceeE--EEEEeCCCCCEEEE--ecCCC------
Q psy17863 210 PIVDACFTRDCQCILTCST----DECLRLFDKATGELLEEYKGH-KSGDFR--IECCLDSKDSQIFC--GSSDG------ 274 (341)
Q Consensus 210 ~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~l~~--~~~dg------ 274 (341)
.+..++|+|||+++++... +..|++||+.+++....+..+ ...+.. ...+|+|+|+.|+. +..++
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 335 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY 335 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCccee
Confidence 6788999999998876643 357999999988876655433 222220 12389999997775 45666
Q ss_pred cEEEEee-eCCCc--eEEEEeeeeccceEE-EEEcCCCcEEEEeC--C--CcEEEEEcccc
Q psy17863 275 KIYKWQL-VDSSQ--ISTLIHSVGKAVVNS-LCSHPTRKHIMSAC--G--NNVKLWTAEED 327 (341)
Q Consensus 275 ~i~iwd~-~~~~~--~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~--d--~~i~vw~~~~~ 327 (341)
.|++||+ ..++. ...+. .+...+.. ++|+|||+.|+..+ + +.+++|+++..
T Consensus 336 ~l~~~d~~~~~~~~~~~~l~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 336 HITVSSSQPNSSNDNIQSIT--SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EEEEECSSCCSSSCCCCBSC--CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred EEEEEeccCCCCccceeEee--cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 5667773 33331 44444 23334444 69999999997665 4 78999998643
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.5e-24 Score=178.37 Aligned_cols=241 Identities=9% Similarity=0.117 Sum_probs=165.3
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc----------ee------eEecCcccceeEEEEecCCCEEE----E
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL----------LL------KTYGGHAHEVNDATAACDSSQIA----S 72 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~----------~~------~~~~~~~~~v~~~~~~~~~~~l~----~ 72 (341)
...++.+++++++.++++++.++ +++|+..... .+ ..+ .+...|.+++|+|++++|+ +
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence 34689999999999999999888 8888643110 11 112 2556799999999999999 7
Q ss_pred ecCCCcEEEEECCCC--------ce---eeeecccCccEEEEEEcCC-CcEEEEecCCCeEEEEEecCCCCcCeEEeecC
Q psy17863 73 GASDKSVILWEVTTG--------QP---VRRWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDS 140 (341)
Q Consensus 73 ~~~dg~i~iw~~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 140 (341)
++.|+.|++||+.++ +. +..+.+|...|.+++|+|+ +.+|++++.||+|++||++++.
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~---------- 183 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV---------- 183 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE----------
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc----------
Confidence 889999999998764 22 4556679999999999997 8899999999999999987532
Q ss_pred CCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCC
Q psy17863 141 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDC 220 (341)
Q Consensus 141 ~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 220 (341)
...... .|...+.+++|+|+|
T Consensus 184 -----------------------~~~~~~------------------------------------~~~~~v~~v~wspdg 204 (434)
T 2oit_A 184 -----------------------KVCATL------------------------------------PSTVAVTSVCWSPKG 204 (434)
T ss_dssp -----------------------EEEEEE------------------------------------CGGGCEEEEEECTTS
T ss_pred -----------------------ceeecc------------------------------------CCCCceeEEEEcCCC
Confidence 000000 023467888999999
Q ss_pred CEEEEeecCCeEEEEeccccceeeeecCccc-----ceeEEEEEeCCCCCEEEEe-cCCC------cEEEEeeeCCCc--
Q psy17863 221 QCILTCSTDECLRLFDKATGELLEEYKGHKS-----GDFRIECCLDSKDSQIFCG-SSDG------KIYKWQLVDSSQ-- 286 (341)
Q Consensus 221 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~-~~dg------~i~iwd~~~~~~-- 286 (341)
++|++|+.||.|++||.+ ++....+..|.. ......++|++++.++++. ..+| .+++|++.+.+.
T Consensus 205 ~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~ 283 (434)
T 2oit_A 205 KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKH 283 (434)
T ss_dssp SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCC
T ss_pred CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCC
Confidence 999999999999999998 555555544322 1233444788888777543 3343 389999976531
Q ss_pred eEEEE---ee-----eeccceEEEEEcCCCcEEEEeC--CCcEEEEEcc
Q psy17863 287 ISTLI---HS-----VGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAE 325 (341)
Q Consensus 287 ~~~~~---~~-----~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~ 325 (341)
...+. .. ....+-..+.+-++.+++++++ .+.|.|....
T Consensus 284 ~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 284 PEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp CCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred CcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 11111 00 1122223344447777766665 6667776644
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-21 Score=162.02 Aligned_cols=262 Identities=9% Similarity=0.095 Sum_probs=173.8
Q ss_pred eCCcEEEEEEccCCCEEEEEeCC----CeEEEEcCCC--cc--eeeEecCcccceeEEEEecCCCEEEEec-CCCcEEEE
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSD----KKIKLWNPYR--NL--LLKTYGGHAHEVNDATAACDSSQIASGA-SDKSVILW 82 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~d----g~i~iw~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw 82 (341)
|...+..++|+|||++|++++.+ +.|.+|++.. ++ .+.....+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 67778889999999999998875 7999998765 33 33334445556677777 788777765 57899999
Q ss_pred ECCCCceeeeec--------------ccCccEEEEEEcCCCcEEEEec-CCCeEEEEEecCCCC----cCeEEeecCCCc
Q psy17863 83 EVTTGQPVRRWR--------------EHASKVTCVKFNEDSSVVISGS-QDNTVMMWDVKSRSH----HPIQCCLDSKDS 143 (341)
Q Consensus 83 ~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~----~~~~~~~~~~~~ 143 (341)
++.....+..+. .+...+.+++|+|+++++++++ .++.|.+|++..... ..+...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~------ 199 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK------ 199 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE------
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec------
Confidence 997543332211 1223458899999999665554 578899998875431 000000
Q ss_pred eEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc------------CCC
Q psy17863 144 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY------------GQE 209 (341)
Q Consensus 144 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~------------~~~ 209 (341)
+.. ... .......+..++|+|+++++++.. ++.+.+|++.... +..
T Consensus 200 --------~~~-----------~~~-~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~ 259 (361)
T 3scy_A 200 --------GTP-----------EAF-KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQ 259 (361)
T ss_dssp --------EEE-----------EEE-ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCC
T ss_pred --------ccc-----------cce-ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCC
Confidence 000 000 111223467899999999876665 5889999987431 223
Q ss_pred CeEEEEEccCCCEEEEeecC--CeEEEEecc--ccc--eeeeecCcccceeEEEEEeCCCCCEEEEec-CCCcEEEEeee
Q psy17863 210 PIVDACFTRDCQCILTCSTD--ECLRLFDKA--TGE--LLEEYKGHKSGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLV 282 (341)
Q Consensus 210 ~i~~~~~~~~~~~l~~~~~d--~~i~i~d~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~ 282 (341)
....++|+|||++|+++..+ +.|.+|++. +++ .+..+.. ...+..+ +|+|+|++|++++ .++.|.+|++.
T Consensus 260 ~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~--~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 260 GSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNF--IITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp CEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEE--EECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceE--EECCCCCEEEEEECCCCCEEEEEEE
Confidence 45799999999998776665 899999985 344 3444443 3344455 8999999888876 67899997654
Q ss_pred --CCCceEEEEeeeeccceEEEEEc
Q psy17863 283 --DSSQISTLIHSVGKAVVNSLCSH 305 (341)
Q Consensus 283 --~~~~~~~~~~~~~~~~v~~~~~~ 305 (341)
+++...... ..+...+.|+.|.
T Consensus 337 ~~~g~~~~~~~-~~~~~~p~~v~~~ 360 (361)
T 3scy_A 337 QATGLLTDIKK-DIKVDKPVCLKFV 360 (361)
T ss_dssp TTTCCEEECSC-CEECSSEEEEEEE
T ss_pred CCCCcEeecce-eeeCCCCeEEEEc
Confidence 555433321 1345578888886
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-23 Score=168.98 Aligned_cols=243 Identities=11% Similarity=0.059 Sum_probs=180.6
Q ss_pred eeeeEEeeeCC--cEEEEEEccCCCEEE-EEeCCCeEEEEcCCCcceeeEecCc-----ccceeEEEEecCCCEEEEec-
Q psy17863 4 TCVQTIDCKQG--AIRAVRFNVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGGH-----AHEVNDATAACDSSQIASGA- 74 (341)
Q Consensus 4 ~~~~~l~~h~~--~v~~~~~~~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~- 74 (341)
+.++++..... .+..++|+|+|++++ ++..++.|.+||+.+++.+..+... ...+..++|+|++++++++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 101 (337)
T 1pby_B 22 AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYES 101 (337)
T ss_dssp EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEE
T ss_pred cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEec
Confidence 44555553221 588999999998665 5556789999999999888776532 23678899999999998886
Q ss_pred -----------CCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCe--------E
Q psy17863 75 -----------SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPI--------Q 135 (341)
Q Consensus 75 -----------~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--------~ 135 (341)
.++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++ ++.|.+||+.+++.... .
T Consensus 102 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~ 178 (337)
T 1pby_B 102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAE 178 (337)
T ss_dssp EEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTT
T ss_pred ccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCC
Confidence 579999999999888777764 4567889999999988887 68899999987542100 0
Q ss_pred EeecCCCceEEEee-ccC-----------------------eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEE
Q psy17863 136 CCLDSKDSQIFCGS-SDG-----------------------KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS 191 (341)
Q Consensus 136 ~~~~~~~~~~~~~~-~~g-----------------------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (341)
....+++..++... .++ .+.+||+.+++.. ..........+..++++|+++++++
T Consensus 179 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~ 257 (337)
T 1pby_B 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFG 257 (337)
T ss_dssp TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEE
T ss_pred ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEE
Confidence 01112222222222 111 5789999988765 4444445556889999999999988
Q ss_pred eCCCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCccc
Q psy17863 192 ACGNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKS 251 (341)
Q Consensus 192 ~~~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 251 (341)
+ ++.+.+||+.... ....+.+++|+|+|+++++++.++.|++||+.+++.+..+..+..
T Consensus 258 ~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 258 A-YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp E-ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred e-CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 8 7899999987543 345678999999999999999999999999999998888765543
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-22 Score=166.50 Aligned_cols=244 Identities=11% Similarity=0.065 Sum_probs=177.6
Q ss_pred cccceeEEEEecCCCEEEEecC-------CCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEE-EecCCCeEEEEE
Q psy17863 54 HAHEVNDATAACDSSQIASGAS-------DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDNTVMMWD 125 (341)
Q Consensus 54 ~~~~v~~~~~~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd 125 (341)
....+..++|+|+++++++++. ++.|.+||..+++.+..+.. ...+..++|+|++++++ +...++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 4456789999999998888774 56899999999998888764 34577899999998555 445578888888
Q ss_pred ecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC---CCceEEEEc
Q psy17863 126 VKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC---GNNVKLWTA 202 (341)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~ 202 (341)
+.+++. +..+......... ......+..++++|+++.++++. ++.+.+||.
T Consensus 118 ~~~~~~----------------------~~~~~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~ 171 (353)
T 3vgz_A 118 AKTGEV----------------------KGRLVLDDRKRTE----EVRPLQPRELVADDATNTVYISGIGKESVIWVVDG 171 (353)
T ss_dssp TTTCCE----------------------EEEEESCCCCCCS----SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEET
T ss_pred CCCCee----------------------EEEEecCCCcccc----ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcC
Confidence 876541 1111111000000 00112367899999999777765 477999998
Q ss_pred cccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecC----cccceeEEEEEeCCCCCEEEEec
Q psy17863 203 EEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG----HKSGDFRIECCLDSKDSQIFCGS 271 (341)
Q Consensus 203 ~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~ 271 (341)
.... ....+..++|+|+++++++++.++.|.+||..+++.+..+.. +...+..+ +++|++++++.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~s~dg~~l~~~~ 249 (353)
T 3vgz_A 172 GNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINI--SLDTARQRAFITD 249 (353)
T ss_dssp TTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEE--EEETTTTEEEEEE
T ss_pred CCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceE--EECCCCCEEEEEe
Confidence 7543 344578899999999999999999999999999988877664 33333444 8999999777665
Q ss_pred C-CCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEE-eC-CCcEEEEEcccccCC
Q psy17863 272 S-DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS-AC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 272 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-d~~i~vw~~~~~~~~ 330 (341)
. ++.|.+||..+++.+..+.. .. ...++|+|+++++++ .. ++.|.+||+.++...
T Consensus 250 ~~~~~v~~~d~~~~~~~~~~~~--~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~ 307 (353)
T 3vgz_A 250 SKAAEVLVVDTRNGNILAKVAA--PE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV 307 (353)
T ss_dssp SSSSEEEEEETTTCCEEEEEEC--SS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCCEEEEEECCCCcEEEEEEc--CC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence 4 59999999999998887772 22 256999999996554 44 899999999876543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-23 Score=175.02 Aligned_cols=225 Identities=8% Similarity=0.080 Sum_probs=161.0
Q ss_pred CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCc----------eeee-----ecccCcc
Q psy17863 35 KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ----------PVRR-----WREHASK 99 (341)
Q Consensus 35 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----------~~~~-----~~~~~~~ 99 (341)
+.+++|+... . + ....++.+++++++.++++++.++ +++|+..... .+.. ...+...
T Consensus 23 ~~vri~~~~~-~----~--~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPE-E----L--PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCS-S----C--CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCcc-c----c--CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 4688887531 1 1 334688999999999999999888 8998753210 0110 1125667
Q ss_pred EEEEEEcCCCcEEE----EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCc
Q psy17863 100 VTCVKFNEDSSVVI----SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA 175 (341)
Q Consensus 100 v~~~~~~~~~~~l~----~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~ 175 (341)
|.+++|+|++++|+ +++.|+.|++||+++...... ...+.+..+...
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~-------------------------~~~~~~~~~~~~---- 145 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAK-------------------------QQKRPFAYHKLL---- 145 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTC-------------------------SSCCCSEEEECC----
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCc-------------------------CCcceeeeeecc----
Confidence 99999999999999 788899999999875310000 000000000000
Q ss_pred eEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC-CCEEEEeecCCeEEEEeccccceeeeecCccccee
Q psy17863 176 VVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD-CQCILTCSTDECLRLFDKATGELLEEYKGHKSGDF 254 (341)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 254 (341)
..|...|.+++|+|+ +.+|++++.||+|++||++++..+....+|...+.
T Consensus 146 -----------------------------~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~ 196 (434)
T 2oit_A 146 -----------------------------KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVT 196 (434)
T ss_dssp -----------------------------CSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEE
T ss_pred -----------------------------CCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCcee
Confidence 013467888888887 78899999999999999998877767777888888
Q ss_pred EEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEee-----eeccceEEEEEcCCCcEEEEeC--CCc------EEE
Q psy17863 255 RIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS-----VGKAVVNSLCSHPTRKHIMSAC--GNN------VKL 321 (341)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~--d~~------i~v 321 (341)
++ +|+|+|++|++|+.||.|++||++ ++....+... .|...|.+++|++++.++++.+ +|. +++
T Consensus 197 ~v--~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i 273 (434)
T 2oit_A 197 SV--CWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVM 273 (434)
T ss_dssp EE--EECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEE
T ss_pred EE--EEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEE
Confidence 87 899999999999999999999987 5555555411 1233899999999999887655 533 899
Q ss_pred EEccccc
Q psy17863 322 WTAEEDY 328 (341)
Q Consensus 322 w~~~~~~ 328 (341)
|++.+..
T Consensus 274 ~~l~~~~ 280 (434)
T 2oit_A 274 ALLPKKE 280 (434)
T ss_dssp EECCCTT
T ss_pred EEeccCC
Confidence 9998653
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-22 Score=178.88 Aligned_cols=306 Identities=11% Similarity=0.082 Sum_probs=202.0
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccc-----eeEEEEecCCCEEEEecCC---------CcE
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE-----VNDATAACDSSQIASGASD---------KSV 79 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------g~i 79 (341)
....+++|+|||++++++ |+.|++||+.+++....+..|... ...++|+|||++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999988886 899999999999887777776543 2447899999999998875 567
Q ss_pred EEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcC---------e----------------
Q psy17863 80 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP---------I---------------- 134 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---------~---------------- 134 (341)
.+||+.+++.. .+..|...+...+|+|||+.|+.+ .++.|.+|++.++.... +
T Consensus 95 ~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 95 DIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred EEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 79999998764 456677889999999999999988 47899999987654211 1
Q ss_pred --EEeecCCCceEEEeecc------------------------------------CeEEEEEccC---Ccc--eeeeEee
Q psy17863 135 --QCCLDSKDSQIFCGSSD------------------------------------GKIYKWQLVD---SSQ--ISTLIHS 171 (341)
Q Consensus 135 --~~~~~~~~~~~~~~~~~------------------------------------g~i~~~d~~~---~~~--~~~~~~~ 171 (341)
.....+++..|+..+.| .+|.+||+.+ ++. ...+...
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 02234444556665422 1578889887 632 2222211
Q ss_pred ----ecCceEEEEEECCCCceEEEeCC-----CceEEEEccccc---------------CCCCe-----EEEEEccCCCE
Q psy17863 172 ----VGKAVVNSLCSHPTRKHIMSACG-----NNVKLWTAEEDY---------------GQEPI-----VDACFTRDCQC 222 (341)
Q Consensus 172 ----~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~---------------~~~~i-----~~~~~~~~~~~ 222 (341)
.+...+..++|+|+++.++.... ..|.+||+.+.. +...+ ....|+|||+.
T Consensus 253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~ 332 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS 332 (740)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence 14456889999999997665432 368999976543 22222 36889999998
Q ss_pred EE-Eeec-C--CeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEE-EEecC----CCcEEEEeeeCC--CceEEEE
Q psy17863 223 IL-TCST-D--ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQI-FCGSS----DGKIYKWQLVDS--SQISTLI 291 (341)
Q Consensus 223 l~-~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~----dg~i~iwd~~~~--~~~~~~~ 291 (341)
++ ..+. + ..|++||...++... +......+..+. .++ ++.| +++.. .+...||.+... +....+.
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~-~~d--~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt 408 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIE-ALT--SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLS 408 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEE-EEC--SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESS
T ss_pred EEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEE-EEe--CCEEEEEEecCCCCCceeEEEEEECCCCCcceeec
Confidence 76 5543 3 468888988665543 333333444331 344 5544 44443 344566655432 2221232
Q ss_pred ee--eeccceEEEEEcCCCcEEEEeC-C---CcEEEEEcccc
Q psy17863 292 HS--VGKAVVNSLCSHPTRKHIMSAC-G---NNVKLWTAEED 327 (341)
Q Consensus 292 ~~--~~~~~v~~~~~~~~~~~l~~~~-d---~~i~vw~~~~~ 327 (341)
.. ........+.|+|++++++... + ..+.+++..++
T Consensus 409 ~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~ 450 (740)
T 4a5s_A 409 CELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (740)
T ss_dssp TTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred cccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCC
Confidence 10 1235688999999999876554 2 35777776644
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-22 Score=165.37 Aligned_cols=276 Identities=9% Similarity=0.088 Sum_probs=194.7
Q ss_pred CCCEEEEEe------CCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC----------CCcEEEEECCCC
Q psy17863 24 DGSYCLTCG------SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS----------DKSVILWEVTTG 87 (341)
Q Consensus 24 ~~~~l~t~~------~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iw~~~~~ 87 (341)
+++++++.. .|+.|.+||..+++.+.++..+..+ .++|+||+++++++.. ++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 566666543 3779999999999998888877666 8999999999998862 577999999998
Q ss_pred ceeeeeccc------CccEEEEEEcCCCcEEEEecC--CCeEEEEEecCCCCcCe-E-------EeecCC-CceEEEeec
Q psy17863 88 QPVRRWREH------ASKVTCVKFNEDSSVVISGSQ--DNTVMMWDVKSRSHHPI-Q-------CCLDSK-DSQIFCGSS 150 (341)
Q Consensus 88 ~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~-------~~~~~~-~~~~~~~~~ 150 (341)
+.+..+... ......++++|+|++|+++.. ++.|.+||+.+.+.... . ....+. ...+++.+.
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~ 171 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICG 171 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEET
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECC
Confidence 888777532 234567999999999998864 58999999987652111 0 112222 247788899
Q ss_pred cCeEEEEEccCCccee-eeE----eeecCceEEEEEECCCCceE-EEeCCCceEEEEcccccC-----------------
Q psy17863 151 DGKIYKWQLVDSSQIS-TLI----HSVGKAVVNSLCSHPTRKHI-MSACGNNVKLWTAEEDYG----------------- 207 (341)
Q Consensus 151 ~g~i~~~d~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~----------------- 207 (341)
||.+.+++........ ... ...... ...+..++++..+ +...++.+.++|+.....
T Consensus 172 dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~ 250 (361)
T 2oiz_A 172 DGGLLTINLGEDGKVASQSRSKQMFSVKDD-PIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKN 250 (361)
T ss_dssp TSSEEEEEECTTSSEEEEEECCCCSCTTTS-CBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTT
T ss_pred CCcEEEEEECCCCcEeeeccccceEcCCCC-ceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccc
Confidence 9999999986532222 110 000000 1111223444333 333456777777643210
Q ss_pred --CCCeEEEEEccCCCEEEEeec-----------CCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCC
Q psy17863 208 --QEPIVDACFTRDCQCILTCST-----------DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG 274 (341)
Q Consensus 208 --~~~i~~~~~~~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 274 (341)
......++++|+++.++++.. .+.|.+||+.+++.+..+..+. ...+ +++|+|++|++++. +
T Consensus 251 ~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~i--a~spdg~~l~v~n~-~ 325 (361)
T 2oiz_A 251 WVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSM--TIDQQRNLMLTLDG-G 325 (361)
T ss_dssp CEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEE--EEETTTTEEEEECS-S
T ss_pred cccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEE--EECCCCCEEEEeCC-C
Confidence 011123789999888877643 3589999999999999998776 5666 89999999998887 9
Q ss_pred cEEEEeeeCC--CceEEEEeeeeccceEEEEEcCCCc
Q psy17863 275 KIYKWQLVDS--SQISTLIHSVGKAVVNSLCSHPTRK 309 (341)
Q Consensus 275 ~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~ 309 (341)
.|.+||..++ +.+..+. ........++++|+|+
T Consensus 326 ~v~v~D~~t~~l~~~~~i~--~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 326 NVNVYDISQPEPKLLRTIE--GAAEASLQVQFHPVGG 360 (361)
T ss_dssp CEEEEECSSSSCEEEEEET--TSCSSEEEEEECCCSC
T ss_pred eEEEEECCCCcceeeEEec--cCCCCcEEEEecCCCC
Confidence 9999999999 8887764 4566778899999985
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-22 Score=165.52 Aligned_cols=246 Identities=9% Similarity=0.052 Sum_probs=162.4
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCC-CcceeeEecCc-ccceeEEEEecCCCE--EEEec-------------CC
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPY-RNLLLKTYGGH-AHEVNDATAACDSSQ--IASGA-------------SD 76 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~-------------~d 76 (341)
..+..++|+|+|++|++++.+ .|.+|++. +++........ .+....++|+|++++ ++++. .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 468899999999999998887 99999987 67654433211 123556899999994 55554 68
Q ss_pred CcEEEEECC-CCceeeeec----ccCccEEEEEEcCCCcEEEEecC-CCeEEEEEec-CCCCcCeEEeecCCCceEEEee
Q psy17863 77 KSVILWEVT-TGQPVRRWR----EHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVK-SRSHHPIQCCLDSKDSQIFCGS 149 (341)
Q Consensus 77 g~i~iw~~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 149 (341)
|.+.+|++. +++....+. .+...+.+++|+|+|++|+++.. ++.|.+|++. +++.
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~------------------ 180 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV------------------ 180 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE------------------
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE------------------
Confidence 999999997 466544433 24567899999999998887653 5788888876 3320
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeec-
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCST- 228 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 228 (341)
.. ...+.... +...+..++|+|+|+++++++.
T Consensus 181 -----~~--------~~~~~~~~----------------------------------~g~~p~~~~~spdg~~l~v~~~~ 213 (365)
T 1jof_A 181 -----EL--------VGSVDAPD----------------------------------PGDHPRWVAMHPTGNYLYALMEA 213 (365)
T ss_dssp -----EE--------EEEEECSS----------------------------------TTCCEEEEEECTTSSEEEEEETT
T ss_pred -----EE--------eeeEecCC----------------------------------CCCCCCEeEECCCCCEEEEEECC
Confidence 00 00000000 0223566777778777776654
Q ss_pred CCeEEEEecc--cccee---e---eecC----ccc------ceeEEEEE-eCCCCCEEEEecCCC------cEEEEeee-
Q psy17863 229 DECLRLFDKA--TGELL---E---EYKG----HKS------GDFRIECC-LDSKDSQIFCGSSDG------KIYKWQLV- 282 (341)
Q Consensus 229 d~~i~i~d~~--~~~~~---~---~~~~----~~~------~~~~~~~~-~~~~~~~l~~~~~dg------~i~iwd~~- 282 (341)
++.|.+|++. +++.. . .+.. |.. .+..+ + ++|+|++|+++..+. .|.+|++.
T Consensus 214 ~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i--~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~ 291 (365)
T 1jof_A 214 GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADV--CALTFSGKYMFASSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEE--EEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccE--EEECCCCCEEEEECCCCCCCCCCeEEEEEECC
Confidence 6788888754 44432 1 1211 111 23344 8 999999988765432 89999996
Q ss_pred CCCceEEEE-eeeeccceEEEEEcC---CCcEEEEeC--CCcEEEEEcccc
Q psy17863 283 DSSQISTLI-HSVGKAVVNSLCSHP---TRKHIMSAC--GNNVKLWTAEED 327 (341)
Q Consensus 283 ~~~~~~~~~-~~~~~~~v~~~~~~~---~~~~l~~~~--d~~i~vw~~~~~ 327 (341)
+++...... ...+...+..++|+| ||++|++++ ++.|++|+++.+
T Consensus 292 ~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 292 CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 555433211 112444577899999 899999988 489999998765
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-23 Score=172.01 Aligned_cols=286 Identities=11% Similarity=0.010 Sum_probs=193.1
Q ss_pred EEEEEEccCCCEEEEEeCC---CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeee
Q psy17863 16 IRAVRFNVDGSYCLTCGSD---KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 92 (341)
Q Consensus 16 v~~~~~~~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 92 (341)
+..++|+|||++|+..... ..|.+||+.+++.......+......+.|+||+++|+.++.++.|.+||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 7888999999998877543 4788899888775444333333333478999999999999989999999998876655
Q ss_pred ecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEe-----eccCeEEEEEccCCcceee
Q psy17863 93 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCG-----SSDGKIYKWQLVDSSQIST 167 (341)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~i~~~d~~~~~~~~~ 167 (341)
...+.. |+++++.|+....+....+|... ....+.+..++.. ..+..|.+||+.+++....
T Consensus 118 ~~~~~~------~~~~g~~l~~~~~~~~~~~~~~~--------~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~ 183 (396)
T 3c5m_A 118 YTVDEE------WKGYGTWVANSDCTKLVGIEILK--------RDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI 183 (396)
T ss_dssp EECCTT------EEEEEEEEECTTSSEEEEEEEEG--------GGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE
T ss_pred Eecccc------cCCCCCEEEeccCCccccccccc--------cccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee
Confidence 554433 66778888887777666666531 1112223333322 3566899999987665433
Q ss_pred eEeeecCceEEEEEECC-CCceEEEeCC-------CceEEEEccccc-----C---CCCeEEEEEccCCCEEEEeecC--
Q psy17863 168 LIHSVGKAVVNSLCSHP-TRKHIMSACG-------NNVKLWTAEEDY-----G---QEPIVDACFTRDCQCILTCSTD-- 229 (341)
Q Consensus 168 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~i~~~~~~~~~-----~---~~~i~~~~~~~~~~~l~~~~~d-- 229 (341)
. .....+..+.|+| +++.++...+ ..|.+|+..... . ...+..++|+|+|+.|+..+.+
T Consensus 184 ~---~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 260 (396)
T 3c5m_A 184 H---QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKG 260 (396)
T ss_dssp E---EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETT
T ss_pred c---cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCC
Confidence 3 2345688999999 7876655432 357888875432 1 2247778999999988776544
Q ss_pred ---CeEEEEeccccceeeeecCcccceeEEEEEeCC-CCCEEEEec----------------CCCcEEEEeeeCCCceEE
Q psy17863 230 ---ECLRLFDKATGELLEEYKGHKSGDFRIECCLDS-KDSQIFCGS----------------SDGKIYKWQLVDSSQIST 289 (341)
Q Consensus 230 ---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~----------------~dg~i~iwd~~~~~~~~~ 289 (341)
+.|++||+.+++........ . .. ..++| +|++++.++ .++.|++||+.+++.. .
T Consensus 261 ~~~~~l~~~d~~~g~~~~l~~~~-~-~~---~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~ 334 (396)
T 3c5m_A 261 QTDRVIYKANPETLENEEVMVMP-P-CS---HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-K 334 (396)
T ss_dssp TCCEEEEEECTTTCCEEEEEECC-S-EE---EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-E
T ss_pred CccceEEEEECCCCCeEEeeeCC-C-CC---CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-E
Confidence 45999999887654332211 1 12 37889 999888754 3478999998877653 3
Q ss_pred EEeeeecc-----------ceEEEEEcCCCcEEEEeC--CCcEEEEEccc
Q psy17863 290 LIHSVGKA-----------VVNSLCSHPTRKHIMSAC--GNNVKLWTAEE 326 (341)
Q Consensus 290 ~~~~~~~~-----------~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~ 326 (341)
+. .+.. .+..++|+|||+.|+.++ ++...+|.++-
T Consensus 335 l~--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~ 382 (396)
T 3c5m_A 335 LC--KHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADV 382 (396)
T ss_dssp EE--ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred cc--CCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEE
Confidence 44 2333 256789999999887766 66667776653
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-22 Score=162.62 Aligned_cols=263 Identities=7% Similarity=0.011 Sum_probs=173.7
Q ss_pred EEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccC-ccEEEEEEcCCCcEEE-EecCCCeEEEEEecCCCCc-----
Q psy17863 60 DATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHA-SKVTCVKFNEDSSVVI-SGSQDNTVMMWDVKSRSHH----- 132 (341)
Q Consensus 60 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~----- 132 (341)
.+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|+++.++ +...++.|.+||+.+++..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 34677888899999999999999999999888776443 2577899999998654 5567899999998875421
Q ss_pred ----------CeEEeecCCCceEEEeecc------------CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEE
Q psy17863 133 ----------PIQCCLDSKDSQIFCGSSD------------GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 190 (341)
Q Consensus 133 ----------~~~~~~~~~~~~~~~~~~~------------g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (341)
+......+++..+++++.+ +.|.+||+.+++.............+.+++++|+++ ++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LY 162 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EE
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EE
Confidence 1222344455578877765 899999998865444333323334578899999999 55
Q ss_pred EeCCCceEEEEcccccC------CC-------------------------CeEEEEEccCCCEEEEeecC-CeEEEEecc
Q psy17863 191 SACGNNVKLWTAEEDYG------QE-------------------------PIVDACFTRDCQCILTCSTD-ECLRLFDKA 238 (341)
Q Consensus 191 ~~~~~~i~~~~~~~~~~------~~-------------------------~i~~~~~~~~~~~l~~~~~d-~~i~i~d~~ 238 (341)
+. ++.+.+||...... .. ....+++++++......... ..+..+|..
T Consensus 163 ~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 241 (349)
T 1jmx_B 163 VA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 241 (349)
T ss_dssp EE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred Ec-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence 54 44599999865430 00 22334444433211000000 111223444
Q ss_pred cccee-eeecCcccceeEEEEEeCC-CCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-
Q psy17863 239 TGELL-EEYKGHKSGDFRIECCLDS-KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC- 315 (341)
Q Consensus 239 ~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 315 (341)
+++.. ..+..+......+ +++| ++++++++ ++.|++||+.+++.+..+. ....+.+++|+|++++|++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~--~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~ 314 (349)
T 1jmx_B 242 TGKTHTQEFADLTELYFTG--LRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN---LDHTYYCVAFDKKGDKLYLGGT 314 (349)
T ss_dssp TCCEEEEEEEECSSCEEEE--EECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE---CSSCCCEEEECSSSSCEEEESB
T ss_pred CCcEEecccccCCCcceee--EecCCCCCEEEEE--cCeEEEEECccCeEEEEEc---CCCCccceEECCCCCEEEEecC
Confidence 33321 1111123333444 8999 99999988 8899999999988877776 234578999999999888888
Q ss_pred CCcEEEEEcccccCCc
Q psy17863 316 GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 316 d~~i~vw~~~~~~~~~ 331 (341)
++.|++||+.+.....
T Consensus 315 ~~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 315 FNDLAVFNPDTLEKVK 330 (349)
T ss_dssp SSEEEEEETTTTEEEE
T ss_pred CCeEEEEeccccceee
Confidence 9999999998765443
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=179.13 Aligned_cols=230 Identities=13% Similarity=0.048 Sum_probs=165.8
Q ss_pred cccceeEEEEecCCCEEEEecC-CCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecC---CCeEEEEEecCC
Q psy17863 54 HAHEVNDATAACDSSQIASGAS-DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ---DNTVMMWDVKSR 129 (341)
Q Consensus 54 ~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~ 129 (341)
+..+|.+++|+|||++|++++. ||++.||+++.++..+....+...+..++|+|| +.+++++. +....+|.+...
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 3567999999999999999887 999999999666654443333368999999999 77777664 444556554431
Q ss_pred CCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCc--eEEEeCCCceEEEEccccc-
Q psy17863 130 SHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK--HIMSACGNNVKLWTAEEDY- 206 (341)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~- 206 (341)
. . +... .+... . .....+++|+++ .+++...+.+.+|++.+..
T Consensus 99 ~-----------------------------~-g~~~-~l~~~-~--~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~ 144 (582)
T 3o4h_A 99 R-----------------------------P-GEEQ-RLEAV-K--PMRILSGVDTGEAVVFTGATEDRVALYALDGGGL 144 (582)
T ss_dssp S-----------------------------T-TCCE-ECTTS-C--SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE
T ss_pred C-----------------------------C-Cccc-cccCC-C--CceeeeeCCCCCeEEEEecCCCCceEEEccCCcE
Confidence 0 0 0000 11000 1 122345666664 4555566777799887643
Q ss_pred ---CCCCeEEEEEccCCCEEEEeecC----CeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCC--cEE
Q psy17863 207 ---GQEPIVDACFTRDCQCILTCSTD----ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG--KIY 277 (341)
Q Consensus 207 ---~~~~i~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~ 277 (341)
...+..+++|+|||++++.++.+ +.|++||+.+++.. .+..|...+... +|+|||+.|+++..++ .|+
T Consensus 145 ~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~--~~SpDG~~l~~~~~~~~~~i~ 221 (582)
T 3o4h_A 145 RELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSA--SISPGMKVTAGLETAREARLV 221 (582)
T ss_dssp EEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEE--EECTTSCEEEEEECSSCEEEE
T ss_pred EEeecCCCceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccc--eECCCCCEEEEccCCCeeEEE
Confidence 11111789999999999988877 78999999887754 667777766655 8999999999888888 899
Q ss_pred EEeeeCCCceEEEEeeeeccceEEEE--------EcCCCcEEEEeC-CCcEEEEEc
Q psy17863 278 KWQLVDSSQISTLIHSVGKAVVNSLC--------SHPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 278 iwd~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~-d~~i~vw~~ 324 (341)
+||+.+++.. .+. .+...+..++ |+|||.++++++ ++.+++|++
T Consensus 222 ~~d~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 222 TVDPRDGSVE-DLE--LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EECTTTCCEE-ECC--CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred EEcCCCCcEE-Ecc--CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 9999888776 554 5666666666 999998888888 999999998
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=182.51 Aligned_cols=259 Identities=12% Similarity=0.078 Sum_probs=183.2
Q ss_pred eEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCc---cEEEEEEcCCCcEEEEecC---------CCeEEEEEe
Q psy17863 59 NDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHAS---KVTCVKFNEDSSVVISGSQ---------DNTVMMWDV 126 (341)
Q Consensus 59 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------d~~i~iwd~ 126 (341)
..++|+|+++++++ +.|++|++||+.+++....+..+.. .+.+++|+|||++|++++. ++.|++||+
T Consensus 19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 36799999965555 4699999999999988777765543 3889999999999998876 789999999
Q ss_pred cCCCC---cC----eEEeecCCCc-eEEEeeccCeEEEEEccCCcceeeeEeeecCce-----------------EEEEE
Q psy17863 127 KSRSH---HP----IQCCLDSKDS-QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV-----------------VNSLC 181 (341)
Q Consensus 127 ~~~~~---~~----~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~-----------------~~~~~ 181 (341)
.+++. .. +....+++++ .++.+ .++.|++|++.+++........ .... ...++
T Consensus 98 ~~g~~~~~~~l~~~~~~~~~SPDG~~la~~-~~~~i~~~~~~~g~~~~l~~~~-~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 98 SNGEFVRGNELPRPIQYLCWSPVGSKLAYV-YQNNIYLKQRPGDPPFQITFNG-RENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp TTTEECCSSCCCSSBCCEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCCCC-BTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred CCCccccceecCcccccceECCCCCEEEEE-ECCeEEEEeCCCCCcEEEecCC-CcCCeEcccccceeeeecccCcccEE
Confidence 87654 22 2333444444 55555 5889999999887664332111 1111 14899
Q ss_pred ECCCCceEEEeCCC-----------------------------------ceEEEEccccc---------------CCCCe
Q psy17863 182 SHPTRKHIMSACGN-----------------------------------NVKLWTAEEDY---------------GQEPI 211 (341)
Q Consensus 182 ~~~~~~~~~~~~~~-----------------------------------~i~~~~~~~~~---------------~~~~i 211 (341)
|+|+|+.|+.+..+ .+.+||+.... +...+
T Consensus 176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (719)
T 1z68_A 176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYF 255 (719)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEE
T ss_pred ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceE
Confidence 99999999886521 67899987543 45568
Q ss_pred EEEEEccCCCEEEEeecC----CeEEEEe----ccccceeeee----cCccccee-----EEEEEeCCCCCEEEE--ecC
Q psy17863 212 VDACFTRDCQCILTCSTD----ECLRLFD----KATGELLEEY----KGHKSGDF-----RIECCLDSKDSQIFC--GSS 272 (341)
Q Consensus 212 ~~~~~~~~~~~l~~~~~d----~~i~i~d----~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~l~~--~~~ 272 (341)
..++|+||++++++.... ..|.+|| ..+++....+ .+|...+. .. .|+|+|+.++. ...
T Consensus 256 ~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~spdg~~l~~~~~~~ 333 (719)
T 1z68_A 256 SWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTP--VFSYDAISYYKIFSDK 333 (719)
T ss_dssp EEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCC--EECTTSSCEEEEEECT
T ss_pred EEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCcc--EECCCCCeEEEEEEcc
Confidence 999999998877764432 3488899 8888766555 35665554 44 79999996554 445
Q ss_pred CC--cEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-C-----CcEEEEEccc
Q psy17863 273 DG--KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G-----NNVKLWTAEE 326 (341)
Q Consensus 273 dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~vw~~~~ 326 (341)
+| .|++||+.+++ ...+. .+...+..+.++ +++.|+..+ + +..++|.++.
T Consensus 334 ~g~~~l~~~~~~~~~-~~~lt--~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 334 DGYKHIHYIKDTVEN-AIQIT--SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp TSCEEEEEESSCSTT-CEECS--CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred CCceEEEEEECCCCc-eEecc--cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 55 57777876665 44454 445567777777 777777666 6 7789998764
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-19 Score=145.16 Aligned_cols=242 Identities=12% Similarity=0.194 Sum_probs=173.3
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec------CcccceeEEEEe-cCCCEEEEecC-CCcEEEEE
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG------GHAHEVNDATAA-CDSSQIASGAS-DKSVILWE 83 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~------~~~~~v~~~~~~-~~~~~l~~~~~-dg~i~iw~ 83 (341)
|-..+.+++++++++++++...++.|.+||.. ++.+..+. .+...+..+++. ++++++++... ++.|.+||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 44679999999999988888889999999976 66666553 234568899995 67766666533 78999999
Q ss_pred CCCCceeeeecc-cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 84 VTTGQPVRRWRE-HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 84 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
.+++.+..+.. +...+..++++++++++++...++.|.+||..... +..+...
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-----------------------~~~~~~~-- 160 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-----------------------LHKFGCS-- 160 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-----------------------EEEEECT--
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE-----------------------EEEeCCC--
Confidence 56777666642 34578999999999888877777888888743210 0000000
Q ss_pred cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccce
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL 242 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 242 (341)
.....+..++++|+|+++++...++.|++||.. ++.
T Consensus 161 -------------------------------------------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~ 196 (286)
T 1q7f_A 161 -------------------------------------------KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQY 196 (286)
T ss_dssp -------------------------------------------TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCE
T ss_pred -------------------------------------------CccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCE
Confidence 012235677788888877777778899999974 555
Q ss_pred eeeecCc--ccceeEEEEEeCCCCCEEEEecCCC-cEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcE
Q psy17863 243 LEEYKGH--KSGDFRIECCLDSKDSQIFCGSSDG-KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNV 319 (341)
Q Consensus 243 ~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i 319 (341)
+..+..+ ...+..+ +++++|+++++...++ .|.+|+ .+++.+..+........+.+++++|+|+++++..+++|
T Consensus 197 ~~~~~~~g~~~~p~~i--~~d~~G~l~v~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v 273 (286)
T 1q7f_A 197 LRQIGGEGITNYPIGV--GINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRL 273 (286)
T ss_dssp EEEESCTTTSCSEEEE--EECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEE
T ss_pred EEEEccCCccCCCcEE--EECCCCCEEEEeCCCCEEEEEEC-CCCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeE
Confidence 5666433 2344555 8999999888887776 999999 46777777763222335789999999998777449999
Q ss_pred EEEEcccc
Q psy17863 320 KLWTAEED 327 (341)
Q Consensus 320 ~vw~~~~~ 327 (341)
++|++...
T Consensus 274 ~v~~~~~~ 281 (286)
T 1q7f_A 274 YIYRYVQL 281 (286)
T ss_dssp EEEECSCC
T ss_pred EEEEcccc
Confidence 99998653
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.9e-20 Score=149.34 Aligned_cols=254 Identities=12% Similarity=0.128 Sum_probs=179.9
Q ss_pred CCcEEEEEEccCCCEEEEEeCC------------------------CeEEEEcCCCcceeeEec-CcccceeEEEEecCC
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSD------------------------KKIKLWNPYRNLLLKTYG-GHAHEVNDATAACDS 67 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~d------------------------g~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 67 (341)
-+.+.+++++|+|+++++...+ +.|.+||..+++.+..+. .+-.....++++|++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4679999999999999888776 479999998888876664 344578899999999
Q ss_pred CEEEEecCCCcEEEEECCCCc-eeeee---------cccCccEEEEEEcC-CCcEEEEec-CCCeEEEEEecCCCCcCeE
Q psy17863 68 SQIASGASDKSVILWEVTTGQ-PVRRW---------REHASKVTCVKFNE-DSSVVISGS-QDNTVMMWDVKSRSHHPIQ 135 (341)
Q Consensus 68 ~~l~~~~~dg~i~iw~~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~d~~i~iwd~~~~~~~~~~ 135 (341)
+++++...++.|++|+..... .+..+ ..+......++++| ++.++++.+ .++.|++|+... .
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~----- 176 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-K----- 176 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-C-----
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-C-----
Confidence 988888889999999975432 44444 23444688999999 788877776 688888888322 1
Q ss_pred EeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEE
Q psy17863 136 CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDAC 215 (341)
Q Consensus 136 ~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~ 215 (341)
....+....... .+ ..........++
T Consensus 177 ----------------------------~~~~~~~~g~~~-------~~-------------------~~~~~~~p~gia 202 (329)
T 3fvz_A 177 ----------------------------FVTQWGEESSGS-------SP-------------------RPGQFSVPHSLA 202 (329)
T ss_dssp ----------------------------EEEEECEECCSS-------SC-------------------CTTEESCEEEEE
T ss_pred ----------------------------EEEEeccCCCCC-------CC-------------------CCcccCCCcEEE
Confidence 000000000000 00 000012356778
Q ss_pred EccC-CCEEEEeecCCeEEEEeccccceeeeecC--cccceeEEEEEeCC------CCCEEEEecCCCcEEEEeeeCCCc
Q psy17863 216 FTRD-CQCILTCSTDECLRLFDKATGELLEEYKG--HKSGDFRIECCLDS------KDSQIFCGSSDGKIYKWQLVDSSQ 286 (341)
Q Consensus 216 ~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~l~~~~~dg~i~iwd~~~~~~ 286 (341)
++|+ +.++++...++.|++||..+++.+..+.. +...+..+ +++| +++..++...+..|++|+..+++.
T Consensus 203 ~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~--~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~ 280 (329)
T 3fvz_A 203 LVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI--SYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEI 280 (329)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE--EEETTEEEEEECCCCTTCSCCCCEEEEETTTCCE
T ss_pred EECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee--eecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeE
Confidence 8887 67777777889999999988888887743 34445544 6777 333333444566899999999998
Q ss_pred eEEEEe-eeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 287 ISTLIH-SVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 287 ~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
+..+.. ..+...+..++++|+|.++++.. +++|++|+++...
T Consensus 281 ~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 281 IDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp EEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred EEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence 887731 14556789999999998888888 9999999987654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.1e-19 Score=144.29 Aligned_cols=222 Identities=9% Similarity=0.086 Sum_probs=145.9
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEe-CCCeEEEEcCCC-c--ceeeEecC---------cccceeEEEEecCCCEEE
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCG-SDKKIKLWNPYR-N--LLLKTYGG---------HAHEVNDATAACDSSQIA 71 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~-~dg~i~iw~~~~-~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~ 71 (341)
.+..+..|...+..++|+|||++|++++ .++.|.+|++.. + +.+..+.. +...+.+++|+|++++++
T Consensus 77 ~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v 156 (347)
T 3hfq_A 77 KLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAV 156 (347)
T ss_dssp EEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEE
T ss_pred EeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEE
Confidence 4455566888899999999999888887 689999999863 2 23333321 122488899999999666
Q ss_pred EecCCCcEEEEECC-CCceee--eecc-cCccEEEEEEcCCCcEEEE-ecCCCeEEEEEecCCCCcCeEEeecCCCceEE
Q psy17863 72 SGASDKSVILWEVT-TGQPVR--RWRE-HASKVTCVKFNEDSSVVIS-GSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIF 146 (341)
Q Consensus 72 ~~~~dg~i~iw~~~-~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 146 (341)
+...++.|.+|++. +++... .+.. ....+..++|+|+|+++++ ...++.+.+|++....
T Consensus 157 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~---------------- 220 (347)
T 3hfq_A 157 IDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT---------------- 220 (347)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT----------------
T ss_pred EeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC----------------
Confidence 66778899999998 454322 2222 2336788999999996665 5667888888876421
Q ss_pred EeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEE-E
Q psy17863 147 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCIL-T 225 (341)
Q Consensus 147 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~-~ 225 (341)
+.+.. +..+...+.+ ......+..++|+|+|++|+ +
T Consensus 221 -----g~~~~--------------------~~~~~~~~~~------------------~~~~~~~~~i~~spdG~~l~v~ 257 (347)
T 3hfq_A 221 -----GAFTQ--------------------LGIVKTIPAD------------------YTAHNGAAAIRLSHDGHFLYVS 257 (347)
T ss_dssp -----TEEEE--------------------EEEEESSCTT------------------CCSCCEEEEEEECTTSCEEEEE
T ss_pred -----CceEE--------------------eeeeeecCCC------------------CCCCCcceeEEECCCCCEEEEE
Confidence 01000 0000000000 00113466788888888774 4
Q ss_pred eecCCeEEEEecccc---ceeeeecCcccceeEEEEEeCCCCCEEEEecC-CCcEEEEee--eCCCce
Q psy17863 226 CSTDECLRLFDKATG---ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS-DGKIYKWQL--VDSSQI 287 (341)
Q Consensus 226 ~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~--~~~~~~ 287 (341)
...++.|.+|++... +.+..+..+...+..+ +|+|+|++|++++. ++.|.+|++ .+++..
T Consensus 258 ~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~--~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 258 NRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDF--DLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EETTTEEEEEEECGGGCEEEEEEEECSSSCCCEE--EECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred eCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeE--EECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 556889999998632 4455555555555556 89999998887765 489999955 445543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-20 Score=166.30 Aligned_cols=286 Identities=11% Similarity=-0.006 Sum_probs=187.2
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEE--eCCCeEEEEcCCCcceeeEecCccccee---------EEEEe--cCCCE-EEEe
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTC--GSDKKIKLWNPYRNLLLKTYGGHAHEVN---------DATAA--CDSSQ-IASG 73 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~--~~dg~i~iw~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~~ 73 (341)
.+.+|...+..++|++++-++++. +.++...||....+.....+..+...+. ...|+ ||++. |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 456789999999999887677776 5588999998655555666766766666 66666 99998 7765
Q ss_pred cC-CCcEEEEECC--C-Cceeeeecc-----cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCce
Q psy17863 74 AS-DKSVILWEVT--T-GQPVRRWRE-----HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQ 144 (341)
Q Consensus 74 ~~-dg~i~iw~~~--~-~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 144 (341)
+. +..|.++++. . ++ ...+.. |...+..++|+|||+.|++++.+.. ... +
T Consensus 98 ~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~-------~~~----------~--- 156 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFT-------GEG----------P--- 156 (662)
T ss_dssp BTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEEC-------SSS----------T---
T ss_pred ECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEeccc-------CCC----------C---
Confidence 54 5667777765 2 33 444544 6678899999999999998876510 000 0
Q ss_pred EEEeeccCeEEEEEccC------CcceeeeEeeecCceEEEEEECCCCceEEEeC-C--------CceEEEEcc-cc---
Q psy17863 145 IFCGSSDGKIYKWQLVD------SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G--------NNVKLWTAE-ED--- 205 (341)
Q Consensus 145 ~~~~~~~g~i~~~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~i~~~~~~-~~--- 205 (341)
......|++||+.+ ++. ..+. ..+...+..++|+|+|+.|+... + ..|.+|++. ..
T Consensus 157 ---~~~~~~i~~~~~~~~~~~~~~~~-~~l~-~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~ 231 (662)
T 3azo_A 157 ---SDVRRFLAAVPLDGSAAADRSAV-RELS-DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA 231 (662)
T ss_dssp ---TCEEEEEEEEETTSTTTTCGGGS-EESS-CSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE
T ss_pred ---CCceeEEEEEECCCCccccCCce-eEEE-ecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc
Confidence 01113455555544 222 1221 01234567789999999988654 2 369999987 33
Q ss_pred c-------CCCCeEEEEEccCCCEEEEeecCC--eEEEEeccccceeeeecCcccc--------eeEEEEEeCCCCCEEE
Q psy17863 206 Y-------GQEPIVDACFTRDCQCILTCSTDE--CLRLFDKATGELLEEYKGHKSG--------DFRIECCLDSKDSQIF 268 (341)
Q Consensus 206 ~-------~~~~i~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~ 268 (341)
. +...+..+.|+|||++++++..++ .|.+||+.+++.......+... +.. +++++++++++
T Consensus 232 ~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~--~~~~~~~~~~~ 309 (662)
T 3azo_A 232 DTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRW--FAPLANGLIAV 309 (662)
T ss_dssp EEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCS--EEECTTSCEEE
T ss_pred ccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCce--EeEeCCCEEEE
Confidence 1 357788999999999888888888 6777777666654433333221 222 37889999999
Q ss_pred EecCCCcEEEEeeeC-CCceEEEEeeeeccceEEE-EEcCCCcEEEEeC-CCcEEEEEc
Q psy17863 269 CGSSDGKIYKWQLVD-SSQISTLIHSVGKAVVNSL-CSHPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 269 ~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~-d~~i~vw~~ 324 (341)
++.. +.++||.+.. +..+..+. .+...+..+ +++++.-++++++ +....+|.+
T Consensus 310 ~~~~-~~~~l~~~d~~~~~~~~l~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 310 VHGK-GAAVLGILDPESGELVDAA--GPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp EEBS-SSCEEEEEETTTTEEEECC--SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred EEEc-CccEEEEEECCCCcEEEec--CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence 9998 9999995542 33456665 566677777 5554444444445 554455543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.8e-18 Score=146.87 Aligned_cols=306 Identities=11% Similarity=0.093 Sum_probs=212.2
Q ss_pred cCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECC--CCceeeeecccCccE
Q psy17863 23 VDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT--TGQPVRRWREHASKV 100 (341)
Q Consensus 23 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~v 100 (341)
|.+.++++...++.|.++|..+++.+.++... ..+..+.|+||++++++++.|+.|.+||+. +++.+..+... ...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCC
Confidence 44556677778999999999999999888743 356789999999999999999999999995 77888777653 346
Q ss_pred EEEEEc----CCCcEEEEecC-CCeEEEEEecCCCCcCeE-------------------EeecCC--CceEEEeeccCeE
Q psy17863 101 TCVKFN----EDSSVVISGSQ-DNTVMMWDVKSRSHHPIQ-------------------CCLDSK--DSQIFCGSSDGKI 154 (341)
Q Consensus 101 ~~~~~~----~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~-------------------~~~~~~--~~~~~~~~~~g~i 154 (341)
..++|+ |||++++++.. ++.+.++|..+.+..... .+..++ ...++.....|.|
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 789999 69998887765 589999997765421111 111111 2244455567889
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc------------CCCCeEEEEEccCC
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY------------GQEPIVDACFTRDC 220 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~------------~~~~i~~~~~~~~~ 220 (341)
.++|....+.+..... ........+.|+|++++++++. ++.|.++|..+.. |...-.. -++|++
T Consensus 323 ~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~ 400 (567)
T 1qks_A 323 LLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTF 400 (567)
T ss_dssp EEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTT
T ss_pred EEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCC
Confidence 9999877654332222 2234567889999999987765 4789999987643 1111111 257875
Q ss_pred CEE-EEee-cCCeEEEEeccc-------cceeeeecCcccceeEEEEEeCCCCCEEEEecC-------CCcEEEEeeeCC
Q psy17863 221 QCI-LTCS-TDECLRLFDKAT-------GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS-------DGKIYKWQLVDS 284 (341)
Q Consensus 221 ~~l-~~~~-~d~~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~ 284 (341)
..+ +++. .++.|.++|..+ .+.++++......-..+ ..+|+++++++... .++|.++|+.+.
T Consensus 401 g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i--~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 401 GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFI--KTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCE--ECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEE--EeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 444 4443 468999999887 56777776543332223 68999999888653 459999999877
Q ss_pred -----Cce-EEEEee------eeccceEEEEEcCCCcEEEEe--C----CCcEEEEEcccccCCccce
Q psy17863 285 -----SQI-STLIHS------VGKAVVNSLCSHPTRKHIMSA--C----GNNVKLWTAEEDYGQAGLS 334 (341)
Q Consensus 285 -----~~~-~~~~~~------~~~~~v~~~~~~~~~~~l~~~--~----d~~i~vw~~~~~~~~~~~~ 334 (341)
... ..+... .....+..+.|+|+|+.+..+ + ++.|.|+|..+....+.+.
T Consensus 479 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 479 TGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp CCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred cccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 222 233210 123578899999999987766 2 5889999988876555544
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-19 Score=146.57 Aligned_cols=271 Identities=10% Similarity=0.122 Sum_probs=187.1
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeee
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 92 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 92 (341)
...|.+++|++++..++..+.++.++.| .++....+..+...+.+++|+|++++++++..++.|.+||.++++....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~ 81 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP 81 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred ccccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE
Confidence 3567889999998888877888999999 4456666777777789999999999888888899999999988876554
Q ss_pred ecccCccEEEEEEcCCCcEEEEecCC----CeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeee
Q psy17863 93 WREHASKVTCVKFNEDSSVVISGSQD----NTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 168 (341)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 168 (341)
...+...+.+++++++++++++...+ +.|.+||.+++... ..+
T Consensus 82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~---------------------------------~~~ 128 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ---------------------------------DII 128 (333)
T ss_dssp EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE---------------------------------EEE
T ss_pred eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE---------------------------------EEE
Confidence 44466789999999999888777665 57777776654311 000
Q ss_pred EeeecCceEEEEEECCCCceEEEeCC-------CceEEEEccccc------CCCCeEEEEEccCCCEEE-EeecCCeEEE
Q psy17863 169 IHSVGKAVVNSLCSHPTRKHIMSACG-------NNVKLWTAEEDY------GQEPIVDACFTRDCQCIL-TCSTDECLRL 234 (341)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~-~~~~d~~i~i 234 (341)
........+..++++|+++++++... +.+..++..... .......++|+|+++.++ +.+.++.|.+
T Consensus 129 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 129 EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred ccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEE
Confidence 00001234778889999888777653 345555443221 123467899999998665 4456789999
Q ss_pred Eeccc-cceeee--------ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeecc------ce
Q psy17863 235 FDKAT-GELLEE--------YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA------VV 299 (341)
Q Consensus 235 ~d~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~v 299 (341)
||..+ +..+.. +.++ ..+..+ +++++|+++++...++.|.+||. +++.+..+. .+.. .+
T Consensus 209 ~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i--~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~--~~~~~~g~~~~~ 282 (333)
T 2dg1_A 209 IALEDDGVTIQPFGATIPYYFTGH-EGPDSC--CIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL--IPGRDEGHMLRS 282 (333)
T ss_dssp EEECTTSSSEEEEEEEEEEECCSS-SEEEEE--EEBTTCCEEEEEETTTEEEEECT-TSCEEEEEE--CTTGGGTCSCBC
T ss_pred EEecCCCcCcccccceEEEecCCC-CCCCce--EECCCCCEEEEEcCCCEEEEECC-CCCEEEEEE--cCCCccccccCc
Confidence 99863 332221 1122 233344 88999988888777899999997 566666665 2222 68
Q ss_pred EEEEEcCCCcEEEEeC-CC----cEEEEEcc
Q psy17863 300 NSLCSHPTRKHIMSAC-GN----NVKLWTAE 325 (341)
Q Consensus 300 ~~~~~~~~~~~l~~~~-d~----~i~vw~~~ 325 (341)
.+++|+||++.|+.++ ++ .-.||.++
T Consensus 283 ~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~ 313 (333)
T 2dg1_A 283 THPQFIPGTNQLIICSNDIEMGGGSMLYTVN 313 (333)
T ss_dssp CEEEECTTSCEEEEEEECGGGTCCEEEEEEE
T ss_pred ceEEECCCCCEEEEEeCccCCCCCceEEEEe
Confidence 9999999987776655 53 24455544
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-18 Score=142.86 Aligned_cols=278 Identities=12% Similarity=0.082 Sum_probs=176.5
Q ss_pred CcEEEEEEccCCCEEEEEe---------CCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCC---C--cE
Q psy17863 14 GAIRAVRFNVDGSYCLTCG---------SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD---K--SV 79 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~---------~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g--~i 79 (341)
..+..+++ ||++++... .++.|.+||+.+++.. .+ ..+..++|+|||++|+..+.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 46778888 898887642 2578999999887643 33 568889999999999887653 2 48
Q ss_pred EEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEc
Q psy17863 80 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQL 159 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~ 159 (341)
.+|++.+++....... .. +..++|+|+++.|+.++.+.. .......+.......++.-........|.+||+
T Consensus 88 ~~~~~~~g~~~~l~~~-~~-~~~~~wspdg~~l~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 159 (347)
T 2gop_A 88 WVADLETLSSKKILEA-KN-IRSLEWNEDSRKLLIVGFKRR------EDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT 159 (347)
T ss_dssp EEEETTTTEEEEEEEE-SE-EEEEEECTTSSEEEEEEECCC------C---------CCCC---------CEEEEEEEET
T ss_pred EEEECCCCceEEEEcC-CC-ccceeECCCCCEEEEEEccCC------CcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence 8889888776554443 34 999999999999988765420 000000011111111111111123467889998
Q ss_pred cCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-------C-ceEEEEccccc-----CCCCeEEEEEccCCCEEEEe
Q psy17863 160 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-------N-NVKLWTAEEDY-----GQEPIVDACFTRDCQCILTC 226 (341)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~i~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~ 226 (341)
.+++....+.. . .+..+.|+|++ +++++.. . ...+|.+.... ....+. .++|+|+.|+..
T Consensus 160 ~~~~~~~~l~~-~---~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~~~~~--~~spdg~~l~~~ 232 (347)
T 2gop_A 160 ESEEVIEEFEK-P---RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEKVSFY--AVDSDGERILLY 232 (347)
T ss_dssp TTTEEEEEEEE-E---TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEEESEE--EEEECSSCEEEE
T ss_pred CCCeEEeeecC-C---CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccCccee--eECCCCCEEEEE
Confidence 87765344433 2 57788999999 6666532 1 33555443211 012333 349999988877
Q ss_pred ecC--------CeEEEEeccccceeeeecCcccceeE-EEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeecc
Q psy17863 227 STD--------ECLRLFDKATGELLEEYKGHKSGDFR-IECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA 297 (341)
Q Consensus 227 ~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (341)
+.+ ..|.+|| +++.......+...+.. + .|+ ++ ++++++.++.+++| +.+++. ..+. .+..
T Consensus 233 ~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~--~~s-dg-~~~~~~~~~~~~l~-~~~g~~-~~~~--~~~~ 302 (347)
T 2gop_A 233 GKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAK--IKD-GK-VYFTLFEEGSVNLY-IWDGEI-KPIA--KGRH 302 (347)
T ss_dssp ECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEE--EET-TE-EEEEEEETTEEEEE-EESSSE-EEEE--CSSS
T ss_pred EccccCCccccceEEEEC--CCceEeccccCCcccCCcc--EEc-Cc-EEEEEecCCcEEEE-EcCCce-EEEe--cCCC
Confidence 644 3688888 56555445555555553 4 688 88 88999999999999 886554 3443 4577
Q ss_pred ceEEEEEcCCCcEEEEeC-CCcE-EEEEcc
Q psy17863 298 VVNSLCSHPTRKHIMSAC-GNNV-KLWTAE 325 (341)
Q Consensus 298 ~v~~~~~~~~~~~l~~~~-d~~i-~vw~~~ 325 (341)
.|.+++|+| .++++++ ++.. .+|.++
T Consensus 303 ~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 303 WIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred eEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 899999999 5666655 5554 788775
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=9.1e-19 Score=144.30 Aligned_cols=254 Identities=11% Similarity=0.111 Sum_probs=177.0
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeC----------CCeEEEEcCCCcceeeEecCc------ccceeEEEEecCC
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGS----------DKKIKLWNPYRNLLLKTYGGH------AHEVNDATAACDS 67 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~----------dg~i~iw~~~~~~~~~~~~~~------~~~v~~~~~~~~~ 67 (341)
+.+.++..+..+ .++|+|||+++++++. ++.|.+||..+++.+.++... ......++++|||
T Consensus 42 ~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg 119 (361)
T 2oiz_A 42 KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDG 119 (361)
T ss_dssp CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTS
T ss_pred eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCC
Confidence 445666666655 8999999999998863 678999999998888877532 2456779999999
Q ss_pred CEEEEecC--CCcEEEEECCCCceeee-ecccCccEEEEEEcCCC-cEEEEecCCCeEEEEEecC-CCCc----------
Q psy17863 68 SQIASGAS--DKSVILWEVTTGQPVRR-WREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKS-RSHH---------- 132 (341)
Q Consensus 68 ~~l~~~~~--dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~-~~~~---------- 132 (341)
++|+++.. +++|.+||+.+++.+.. +... . ...+.+.|++ ..+++.+.||.+.+|++.. ++..
T Consensus 120 ~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~ 197 (361)
T 2oiz_A 120 KFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFS 197 (361)
T ss_dssp SEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSC
T ss_pred CEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEc
Confidence 99998864 58899999999988877 6532 2 2335567754 6777888899999888864 2211
Q ss_pred ----CeEEeecCCCceEEEeeccCeEEEEEccCCccee--eeEeee----c----CceEEEEEECCCCceEEEeC-----
Q psy17863 133 ----PIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS--TLIHSV----G----KAVVNSLCSHPTRKHIMSAC----- 193 (341)
Q Consensus 133 ----~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~--~~~~~~----~----~~~~~~~~~~~~~~~~~~~~----- 193 (341)
+........+..++..+.++.+.++|+....... .+.... . ......++++|+++.+++..
T Consensus 198 ~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~ 277 (361)
T 2oiz_A 198 VKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGK 277 (361)
T ss_dssp TTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCC
T ss_pred CCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCC
Confidence 0000111223355666678999999987544221 111000 0 00111368899988777653
Q ss_pred -------CCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEEEEecccc--ceeeeecCcccceeEEEE
Q psy17863 194 -------GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATG--ELLEEYKGHKSGDFRIEC 258 (341)
Q Consensus 194 -------~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~ 258 (341)
.+.+.+||..+.. ... ...++|+|+|++|++++. +.|.+||..++ +.+..+..+......+
T Consensus 278 ~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~-- 353 (361)
T 2oiz_A 278 EGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQV-- 353 (361)
T ss_dssp TTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEE--
T ss_pred cccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEE--
Confidence 2479999987654 223 899999999999998887 99999999999 8888875555544555
Q ss_pred EeCCCCC
Q psy17863 259 CLDSKDS 265 (341)
Q Consensus 259 ~~~~~~~ 265 (341)
+++|+|+
T Consensus 354 ~~~p~G~ 360 (361)
T 2oiz_A 354 QFHPVGG 360 (361)
T ss_dssp EECCCSC
T ss_pred EecCCCC
Confidence 7889875
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-19 Score=151.99 Aligned_cols=257 Identities=7% Similarity=0.004 Sum_probs=164.5
Q ss_pred EEEcCCCcceeeEecCcccceeE-----EEEecCCCEEEEecC-CC--cEEEEECCCCceeeeecccCccEEEEEEcCCC
Q psy17863 38 KLWNPYRNLLLKTYGGHAHEVND-----ATAACDSSQIASGAS-DK--SVILWEVTTGQPVRRWREHASKVTCVKFNEDS 109 (341)
Q Consensus 38 ~iw~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 109 (341)
..++..++..+..+..|...... .+|+|||++|+.++. ++ .|.+||+.+++.......+...+....|+||+
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg 92 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD 92 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC
Confidence 44577788888888877766655 889999999998887 66 48889999988877776666666577899999
Q ss_pred cEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceE
Q psy17863 110 SVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHI 189 (341)
Q Consensus 110 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (341)
+.|+.++.++.|.+||+.+++...+. .. +..... .....++|+++.+
T Consensus 93 ~~l~~~~~~~~l~~~d~~~g~~~~~~--~~-~~~~~~------------------------------~~~~~~~~dg~~l 139 (388)
T 3pe7_A 93 DALFYVKDGRNLMRVDLATLEENVVY--QV-PAEWVG------------------------------YGTWVANSDCTKL 139 (388)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEE--EC-CTTEEE------------------------------EEEEEECTTSSEE
T ss_pred CEEEEEeCCCeEEEEECCCCcceeee--ec-hhhccc------------------------------ccceeECCCCCee
Confidence 99999998999999999876522111 11 111000 0111123444443
Q ss_pred EEe-----------------------CCCceEEEEccccc------CCCCeEEEEEcc-CCCEEEEeecC------CeEE
Q psy17863 190 MSA-----------------------CGNNVKLWTAEEDY------GQEPIVDACFTR-DCQCILTCSTD------ECLR 233 (341)
Q Consensus 190 ~~~-----------------------~~~~i~~~~~~~~~------~~~~i~~~~~~~-~~~~l~~~~~d------~~i~ 233 (341)
+.. ....|.+|++.... +...+..+.|+| ||+.|+....+ ..|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~ 219 (388)
T 3pe7_A 140 VGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMW 219 (388)
T ss_dssp EEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEE
T ss_pred ccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEE
Confidence 321 12456666665433 345678999999 99988877653 3688
Q ss_pred EEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecC-C----CcEEEEeeeCCCceEEEEeeeecc---ceEEEEEc
Q psy17863 234 LFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS-D----GKIYKWQLVDSSQISTLIHSVGKA---VVNSLCSH 305 (341)
Q Consensus 234 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d----g~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~~ 305 (341)
++|...++. ..+..+.........+|+|+|+.|+..+. + +.|++||+.+++.........+.. ....++|+
T Consensus 220 ~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~s 298 (388)
T 3pe7_A 220 LINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMV 298 (388)
T ss_dssp EEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEE
T ss_pred EEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEc
Confidence 888765543 34443432222233489999997765432 2 249999998887533222111111 01223799
Q ss_pred CCCcEEEEe---------C-CCcEEEEEccccc
Q psy17863 306 PTRKHIMSA---------C-GNNVKLWTAEEDY 328 (341)
Q Consensus 306 ~~~~~l~~~---------~-d~~i~vw~~~~~~ 328 (341)
|||+.|+.. . +..|++|++.++.
T Consensus 299 pdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 299 GDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT 331 (388)
T ss_dssp EEECCC------------CCCCEEEEEETTTTE
T ss_pred cCCCcceeEeeeccccccCCCCEEEEEeccCCc
Confidence 999988853 4 6689999998754
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-17 Score=134.11 Aligned_cols=262 Identities=8% Similarity=-0.001 Sum_probs=168.1
Q ss_pred eeeEEeeeCCcEEEEEEccCCC-EEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
.+..+..+.....+++|+|+|+ +++++..++.|..|+..++ ...+..+...+.+++++|+++++++...++.|.+||
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d 96 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQR 96 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEc
Confidence 3456666777889999999998 7788888999999998876 566766778899999999999888877778999999
Q ss_pred CCCCceeeeeccc----CccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEc
Q psy17863 84 VTTGQPVRRWREH----ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQL 159 (341)
Q Consensus 84 ~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~ 159 (341)
..+++........ ...+..++++|+|+++++....|....+...... . ....+.|..++.
T Consensus 97 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~-------~---------~~~~~~l~~~~~ 160 (296)
T 3e5z_A 97 EPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGE-------M---------ELPGRWVFRLAP 160 (296)
T ss_dssp STTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCC-------C---------CSSSCEEEEECT
T ss_pred CCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccccccc-------c---------cCCCcEEEEECC
Confidence 9888754433221 2345678999999887773321110000000000 0 000122222222
Q ss_pred cCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEecc-
Q psy17863 160 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKA- 238 (341)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~- 238 (341)
. + ....+.. .......++|+|+++.+++.+.++.|++|++.
T Consensus 161 ~-g-~~~~~~~------------------------------------~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~ 202 (296)
T 3e5z_A 161 D-G-TLSAPIR------------------------------------DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA 202 (296)
T ss_dssp T-S-CEEEEEC------------------------------------CCSSEEEEEECTTSCEEEEETTTTEEEEEEECS
T ss_pred C-C-CEEEeec------------------------------------CCCCCccEEECCCCCEEEEeCCCCeEEEEEECC
Confidence 2 1 1111100 12234567777888777666677888888876
Q ss_pred ccce---eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEE-cCCCcEEEEe
Q psy17863 239 TGEL---LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS-HPTRKHIMSA 314 (341)
Q Consensus 239 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~ 314 (341)
+++. ...+..+...+..+ +++++|++.++. ++.|.+|+.. ++.+..+. .+.. +++++| +|+++.|+++
T Consensus 203 ~g~~~~~~~~~~~~~~~p~~i--~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~--~~~~-~~~~~f~~~d~~~L~v~ 274 (296)
T 3e5z_A 203 RGETEYQGVHFTVEPGKTDGL--RVDAGGLIWASA--GDGVHVLTPD-GDELGRVL--TPQT-TSNLCFGGPEGRTLYMT 274 (296)
T ss_dssp SSCEEEEEEEECCSSSCCCSE--EEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE--CSSC-CCEEEEESTTSCEEEEE
T ss_pred CCcCcCCCeEeeCCCCCCCeE--EECCCCCEEEEc--CCeEEEECCC-CCEEEEEE--CCCC-ceeEEEECCCCCEEEEE
Confidence 4443 22332233333444 889999876666 7889999974 77777776 4555 899999 5899988888
Q ss_pred CCCcEEEEEcccccCC
Q psy17863 315 CGNNVKLWTAEEDYGQ 330 (341)
Q Consensus 315 ~d~~i~vw~~~~~~~~ 330 (341)
+.+.+.-++..++..+
T Consensus 275 t~~~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 275 VSTEFWSIETNVRGLE 290 (296)
T ss_dssp ETTEEEEEECSCCBCC
T ss_pred cCCeEEEEEccccccc
Confidence 8444555555554443
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-19 Score=160.94 Aligned_cols=263 Identities=7% Similarity=-0.014 Sum_probs=176.8
Q ss_pred cceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCcc-----EEEEEEcCCCcEEEEecCC---------CeE
Q psy17863 56 HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASK-----VTCVKFNEDSSVVISGSQD---------NTV 121 (341)
Q Consensus 56 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------~~i 121 (341)
....++.|+||+++++++ |++|++||+.+++....+..|... ...+.|+|||++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999988886 899999999999987777766532 2447899999999998876 566
Q ss_pred EEEEecCCCC-------cCeEEeecCCCc-eEEEeeccCeEEEEEccCCcceeeeEeeecCc-----------------e
Q psy17863 122 MMWDVKSRSH-------HPIQCCLDSKDS-QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA-----------------V 176 (341)
Q Consensus 122 ~iwd~~~~~~-------~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~-----------------~ 176 (341)
.+||+.+++. .......+++++ .++.+ .++.|++|++.+++..+... ..... .
T Consensus 95 ~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~-~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 95 DIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITW-TGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCS-CCBTTTEEESBCCHHHHHHTSSS
T ss_pred EEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcC-CCCccceecCcccccccchhcCC
Confidence 7999987642 223444455554 55555 67999999998876543221 11111 1
Q ss_pred EEEEEECCCCceEEEeC--CCceEEEEccccc----CCCCeEEEEEccCCCEEEEeecCCeEEEEeccc---cc--eeee
Q psy17863 177 VNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY----GQEPIVDACFTRDCQCILTCSTDECLRLFDKAT---GE--LLEE 245 (341)
Q Consensus 177 ~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~--~~~~ 245 (341)
...+.|+|||+.|+... +..+.+|++.... +......+.+.+.|.. .....|++||+.+ ++ ....
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~~~~~ 248 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNATSIQ 248 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCSSSCCCEEE
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc----CCeeEEEEEECCCCCCCCcceEEE
Confidence 23589999999988875 3557888765432 3345667777776642 2233689999998 73 2223
Q ss_pred ec------CcccceeEEEEEeCCCCCEEEEec----CCCcEEEEeeeCCC----c--eEEEEeeeeccceE-----EEEE
Q psy17863 246 YK------GHKSGDFRIECCLDSKDSQIFCGS----SDGKIYKWQLVDSS----Q--ISTLIHSVGKAVVN-----SLCS 304 (341)
Q Consensus 246 ~~------~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~----~--~~~~~~~~~~~~v~-----~~~~ 304 (341)
+. ++...+..+ +|+|||+.++... .+..|++||+.+++ + +..+....+...|. .+.|
T Consensus 249 l~~~~~~~~~~~~~~~~--~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~f 326 (740)
T 4a5s_A 249 ITAPASMLIGDHYLCDV--TWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHF 326 (740)
T ss_dssp ECCCHHHHTSCEEEEEE--EEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEE
T ss_pred ecCCccCCCCCeEEEEE--EEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceE
Confidence 33 255555555 8999999666543 34579999999987 1 22232124554444 7889
Q ss_pred cCCCcEEE-EeC--CC--cEEEEEccccc
Q psy17863 305 HPTRKHIM-SAC--GN--NVKLWTAEEDY 328 (341)
Q Consensus 305 ~~~~~~l~-~~~--d~--~i~vw~~~~~~ 328 (341)
+|||+.|+ ..+ +| .|++|++.++.
T Consensus 327 spDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 327 TLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred cCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 99999877 554 44 57778876543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-17 Score=132.36 Aligned_cols=221 Identities=10% Similarity=0.067 Sum_probs=165.0
Q ss_pred CCCEEEEEeCCCeEEEEcCCCcceeeEecCcc-cceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeeccc-CccEE
Q psy17863 24 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA-HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREH-ASKVT 101 (341)
Q Consensus 24 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~ 101 (341)
.+++|++++.++.|.+||.++++.+.++..+. ..+.++.++|+|++++ +.++.|..||. +++.+..+..+ ...+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 46789999999999999999999999998766 4789999999999888 34678999998 89999988865 35788
Q ss_pred EEEEcCCCcEEEEecC-CCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEE
Q psy17863 102 CVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 180 (341)
Q Consensus 102 ~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 180 (341)
++.+.++|+.+++.+. ++.+..+|.. ++ .+.-+.+.....
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk----------------------~l~~~~~~~~~~---------------- 121 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNMK-GE----------------------VLSKTEFETGIE---------------- 121 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECTT-SC----------------------EEEEEEECCSCS----------------
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeCC-CC----------------------EEEEEeccCCCC----------------
Confidence 9999999999998776 5555555532 11 011111110000
Q ss_pred EECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEe
Q psy17863 181 CSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCL 260 (341)
Q Consensus 181 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 260 (341)
........+++.++|+++++...++.|..||.+ |+.+.++..... .... ..
T Consensus 122 -------------------------~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~-~~~~--~~ 172 (276)
T 3no2_A 122 -------------------------RPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGT-PFSS--AF 172 (276)
T ss_dssp -------------------------SGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSC-CCEE--EE
T ss_pred -------------------------cccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCC-ccce--eE
Confidence 001123344678889999999999999999998 999888876533 3334 67
Q ss_pred CCCCCEEEEecCCCcEEEEeeeCCCceEEEEeee----eccceEEEEEcCCCcEEEEeC
Q psy17863 261 DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV----GKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 261 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~ 315 (341)
.++++.++++..++.|..+|..+++.+.++.... ....+..++..++|.++++..
T Consensus 173 ~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 173 LDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred cCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 7899999999989999999998899999887211 112378888899999888873
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.3e-16 Score=123.17 Aligned_cols=276 Identities=11% Similarity=0.007 Sum_probs=188.3
Q ss_pred EeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeE-ecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCC
Q psy17863 9 IDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKT-YGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG 87 (341)
Q Consensus 9 l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 87 (341)
+..+...+.++++.++|+++++...++.|.+||.. ++.... +..+...+..+++.+++.++++...++.|..|+.. +
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 44556789999999999988776668899999987 543322 22345678999999999988887778889999976 4
Q ss_pred cee-eeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCccee
Q psy17863 88 QPV-RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 166 (341)
Q Consensus 88 ~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~ 166 (341)
+.. ..+......+..+++.+++.++++...++.|..||. +++ +..+...
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-----------------------~~~~~~~------ 137 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK-----------------------IREYELP------ 137 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC-----------------------EEEEECS------
T ss_pred cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC-----------------------EEEecCC------
Confidence 321 122224557889999999988887777788888876 322 1111100
Q ss_pred eeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEecc
Q psy17863 167 TLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 238 (341)
.....+..+++.+++...++... +.+..|+..... ....+..++++++|+++++...++.|.+||.
T Consensus 138 -----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~- 211 (299)
T 2z2n_A 138 -----NKGSYPSFITLGSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT- 211 (299)
T ss_dssp -----STTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-
T ss_pred -----CCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-
Confidence 01234677888888877776653 677777762211 2345788999999997777667889999998
Q ss_pred ccceeee-ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCC
Q psy17863 239 TGELLEE-YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGN 317 (341)
Q Consensus 239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~ 317 (341)
+++.... ...+...+..+ +++++|++.++...++.|..||. +++ +..+....+...+.++++ +++.++++...+
T Consensus 212 ~g~~~~~~~~~~~~~~~~i--~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~ 286 (299)
T 2z2n_A 212 SGEITEFKIPTPNARPHAI--TAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAMECD 286 (299)
T ss_dssp TCCEEEEECSSTTCCEEEE--EECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEETTT
T ss_pred CCcEEEEECCCCCCCceeE--EECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEecCC
Confidence 6654322 22233445555 88999987777667889999997 443 334332234467899999 999888776666
Q ss_pred cEEEEEcccc
Q psy17863 318 NVKLWTAEED 327 (341)
Q Consensus 318 ~i~vw~~~~~ 327 (341)
.+..++.+++
T Consensus 287 ~l~~~~~~~~ 296 (299)
T 2z2n_A 287 KIGKLTLIKD 296 (299)
T ss_dssp EEEEEEEC--
T ss_pred cEEEEEcCcc
Confidence 6777776654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9e-18 Score=150.95 Aligned_cols=248 Identities=13% Similarity=0.073 Sum_probs=162.6
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCC-----eEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCc--------
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDK-----KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKS-------- 78 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg-----~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------- 78 (341)
|...+..++|||||++||.+..++ .|++||+.+++...... ....+..++|+|||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~ 201 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTE 201 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cCcccceEEEEeCCCEEEEEEECCccccccccc
Confidence 334688999999999999776543 89999999988765432 2223678999999999999887765
Q ss_pred --------EEEEECCCCcee----eeecccCccEEEEEEcCCCcEEEEecC-----CCeEEEEEecCCCCcCeEEeecCC
Q psy17863 79 --------VILWEVTTGQPV----RRWREHASKVTCVKFNEDSSVVISGSQ-----DNTVMMWDVKSRSHHPIQCCLDSK 141 (341)
Q Consensus 79 --------i~iw~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~ 141 (341)
|++|++.+++.. .....|...+..+.|+|||++|+..+. +..|.+||+.+....
T Consensus 202 ~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~--------- 272 (710)
T 2xdw_A 202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNG--------- 272 (710)
T ss_dssp CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSS---------
T ss_pred cccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccc---------
Confidence 999999887632 222334566889999999999887764 345555555431000
Q ss_pred CceEEEeeccCeEEEEEccCCc-ceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCC
Q psy17863 142 DSQIFCGSSDGKIYKWQLVDSS-QISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDC 220 (341)
Q Consensus 142 ~~~~~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~ 220 (341)
..+. ....+... ...+.. .|+|+|
T Consensus 273 ------------------~~~~~~~~~l~~~------------------------------------~~~~~~-~~s~dg 297 (710)
T 2xdw_A 273 ------------------ITGILKWVKLIDN------------------------------------FEGEYD-YVTNEG 297 (710)
T ss_dssp ------------------SCSSCCCEEEECS------------------------------------SSSCEE-EEEEET
T ss_pred ------------------cCCccceEEeeCC------------------------------------CCcEEE-EEeccC
Confidence 0011 11111110 011111 356666
Q ss_pred CEEEEeec----CCeEEEEeccccc--eeeeecCccc--ceeEEEEEeCCCCCEEEEecCCCc--EEEEeeeCCCceEEE
Q psy17863 221 QCILTCST----DECLRLFDKATGE--LLEEYKGHKS--GDFRIECCLDSKDSQIFCGSSDGK--IYKWQLVDSSQISTL 290 (341)
Q Consensus 221 ~~l~~~~~----d~~i~i~d~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~ 290 (341)
+.|+..+. ++.|.+||+.++. ....+..+.. .+..+ ++++++.++++...++. |++|++.+++.+..+
T Consensus 298 ~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 298 TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV--ACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIF 375 (710)
T ss_dssp TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEE--EEETTTEEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEE--EEEcCCEEEEEEEECCEEEEEEEECCCCCEEEec
Confidence 66655444 3469999988764 2344544543 34444 66677778888888885 555666577777777
Q ss_pred EeeeeccceEEEEEcCCCcEEEEe--C---CCcEEEEEccccc
Q psy17863 291 IHSVGKAVVNSLCSHPTRKHIMSA--C---GNNVKLWTAEEDY 328 (341)
Q Consensus 291 ~~~~~~~~v~~~~~~~~~~~l~~~--~---d~~i~vw~~~~~~ 328 (341)
. .+...+..+.++|++..++.. + .+.|+.|++.++.
T Consensus 376 ~--~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 376 P--LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp C--CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred C--CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 6 557788999999998766533 2 4789999987654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-16 Score=128.01 Aligned_cols=231 Identities=13% Similarity=0.090 Sum_probs=159.9
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCC----CcEE
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD----KSVI 80 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~ 80 (341)
....+..+...+.+++|+|+|++++++..++.|.+||..+++.......+...+.+++++|+++++++...+ +.|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~ 115 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF 115 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence 445666677788999999999988888889999999998877655444566789999999999888877666 6899
Q ss_pred EEECCCCceeeeec--ccCccEEEEEEcCCCcEEEEecCC------CeEEEEEecCCCCcCeEEeecCCCceEEEeeccC
Q psy17863 81 LWEVTTGQPVRRWR--EHASKVTCVKFNEDSSVVISGSQD------NTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDG 152 (341)
Q Consensus 81 iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g 152 (341)
+||.++++....+. .+...+.+++++|+++++++...+ +.|..+|..+
T Consensus 116 ~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~------------------------ 171 (333)
T 2dg1_A 116 AATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF------------------------ 171 (333)
T ss_dssp EECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS------------------------
T ss_pred EEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC------------------------
Confidence 99988776543332 244578999999999877765532 2233332221
Q ss_pred eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc---------------CCCCeEEEE
Q psy17863 153 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY---------------GQEPIVDAC 215 (341)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~---------------~~~~i~~~~ 215 (341)
.+. ..+.. ....+..++++|+++.++.+. ++.|.+|+..... ....+..++
T Consensus 172 ---------~~~-~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 239 (333)
T 2dg1_A 172 ---------RTV-TPIIQ--NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCC 239 (333)
T ss_dssp ---------CCE-EEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEE
T ss_pred ---------CEE-EEeec--CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceE
Confidence 111 11111 112367889999988655443 4788888874311 012567799
Q ss_pred EccCCCEEEEeecCCeEEEEeccccceeeeecCccc------ceeEEEEEeCCCCCEEEEecCCC
Q psy17863 216 FTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKS------GDFRIECCLDSKDSQIFCGSSDG 274 (341)
Q Consensus 216 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~dg 274 (341)
++++|+++++...++.|.+||. +++.+..+..+.. .+..+ +++++++.|+.++.++
T Consensus 240 ~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~--~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 240 IDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHP--QFIPGTNQLIICSNDI 301 (333)
T ss_dssp EBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEE--EECTTSCEEEEEEECG
T ss_pred ECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceE--EECCCCCEEEEEeCcc
Confidence 9999998888777899999998 4666666654432 45555 7789987777665553
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-17 Score=135.07 Aligned_cols=281 Identities=11% Similarity=0.075 Sum_probs=199.7
Q ss_pred EEEccCCCEEEEEeC-----CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEec----------CCCcEEEEE
Q psy17863 19 VRFNVDGSYCLTCGS-----DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA----------SDKSVILWE 83 (341)
Q Consensus 19 ~~~~~~~~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~ 83 (341)
....|+++.+.+... ++.|.+.|..+++.+.++.....+ . ++++||+++++++. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 455789998887765 679999999999999998765555 4 99999999988775 357899999
Q ss_pred CCCCceeeeecccC-------ccEEEEEEcCCCcEEEEecC--CCeEEEEEecCCCCcCeE------EeecCCCceEEEe
Q psy17863 84 VTTGQPVRRWREHA-------SKVTCVKFNEDSSVVISGSQ--DNTVMMWDVKSRSHHPIQ------CCLDSKDSQIFCG 148 (341)
Q Consensus 84 ~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~~~ 148 (341)
..+++.+..+.-.. .....++|+|||++++.+.. ++.|.++|+.+.+..... .........+++.
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~ 195 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH 195 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEE
Confidence 99999888775321 23457899999999988864 689999999987632111 1111223466788
Q ss_pred eccCeEEEEEccC-CcceeeeEee--ecCceE-EEEEE-CCCCceEEEeCCCceEEEEccccc-----------------
Q psy17863 149 SSDGKIYKWQLVD-SSQISTLIHS--VGKAVV-NSLCS-HPTRKHIMSACGNNVKLWTAEEDY----------------- 206 (341)
Q Consensus 149 ~~~g~i~~~d~~~-~~~~~~~~~~--~~~~~~-~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~----------------- 206 (341)
+.||++.+.++.. ++........ .....+ ....| .++|++++...++.+.+.|.....
T Consensus 196 ~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~ 275 (386)
T 3sjl_D 196 CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERAD 275 (386)
T ss_dssp ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHT
T ss_pred CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccc
Confidence 8999999999976 4432211100 011111 12344 478888888888999999986542
Q ss_pred --CCCCeEEEEEccCCCEEEEeec----------CCeEEEEeccccceeeeecCcccceeEEEEEeCCCCC-EEEEe-cC
Q psy17863 207 --GQEPIVDACFTRDCQCILTCST----------DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS-QIFCG-SS 272 (341)
Q Consensus 207 --~~~~i~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~-~~ 272 (341)
.......++++++++.+++... .+.|.++|+.+++.++.+.... .+..+ ++++|++ +|++. ..
T Consensus 276 g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~l--avs~D~~~~ly~tn~~ 352 (386)
T 3sjl_D 276 GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSI--NVSQDEKPLLYALSTG 352 (386)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEE--EECSSSSCEEEEEETT
T ss_pred cccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceE--EECCCCCeEEEEEcCC
Confidence 1123345788999988887643 2579999999999988886432 44555 8999997 66664 56
Q ss_pred CCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCC
Q psy17863 273 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 273 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
++.|.++|..+++.+.++...+| -+.|.+++|
T Consensus 353 ~~~VsViD~~t~k~~~~i~~~~~---p~~l~~s~d 384 (386)
T 3sjl_D 353 DKTLYIHDAESGEELRSVNQLGH---GPQVITTAD 384 (386)
T ss_dssp TTEEEEEETTTCCEEEEECCCCS---SCCEEEECC
T ss_pred CCeEEEEECCCCcEEEEecCCCC---CceeEECCc
Confidence 89999999999999999874333 445566666
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.7e-17 Score=127.97 Aligned_cols=240 Identities=8% Similarity=0.032 Sum_probs=161.0
Q ss_pred cEEEEEEccCCCEEE-EEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeee
Q psy17863 15 AIRAVRFNVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 93 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 93 (341)
...+++++++|++++ +...++.|.+|+..+.........+...+.+++++++++++++.. ++.|.+||...... ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eee
Confidence 678999999999777 546788999999765543322223345678899999998666655 88999999865543 333
Q ss_pred c-ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeee
Q psy17863 94 R-EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV 172 (341)
Q Consensus 94 ~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~ 172 (341)
. .....+..++++++++++++...++.|.+|+..+... .... .
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~---------------------------------~~~~--~- 146 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ---------------------------------TVLP--F- 146 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC---------------------------------EECC--C-
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee---------------------------------Eeec--c-
Confidence 2 2335688999999988777766677777775432210 0000 0
Q ss_pred cCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccc
Q psy17863 173 GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSG 252 (341)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 252 (341)
. ....+..++++++|+++++...++.|.+||............+...
T Consensus 147 ~---------------------------------~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 193 (270)
T 1rwi_B 147 T---------------------------------GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITA 193 (270)
T ss_dssp C---------------------------------SCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCS
T ss_pred c---------------------------------cCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCC
Confidence 0 0123455677888876666666788999998765543332223234
Q ss_pred eeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccC
Q psy17863 253 DFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~ 329 (341)
...+ +++++|.++++...++.|.+|+...... ..... .+...+.+++++++|+++++.. ++.|+++++.....
T Consensus 194 p~~i--~~d~~g~l~v~~~~~~~v~~~~~~~~~~-~~~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 194 PWGI--AVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPF-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEEE--EECTTCCEEEEETTTSCEEEECTTCSCC-EECCC-CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred ceEE--EECCCCCEEEEECCCCcEEEEcCCCCcc-eeecc-CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 4455 8899997777777889999999755433 22221 2335689999999999888888 99999999987654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.2e-19 Score=147.58 Aligned_cols=266 Identities=9% Similarity=-0.026 Sum_probs=167.4
Q ss_pred EEEcCCCcceeeEecCcccc-----eeEEEEecCCCEEEEecCC---CcEEEEECCCCceeeeecccCccEEEEEEcCCC
Q psy17863 38 KLWNPYRNLLLKTYGGHAHE-----VNDATAACDSSQIASGASD---KSVILWEVTTGQPVRRWREHASKVTCVKFNEDS 109 (341)
Q Consensus 38 ~iw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~ 109 (341)
...|..+++.+..+..+... +..++|+|||++|+..... ..|.+||+.+++.......+......+.|+||+
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg 92 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE 92 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC
Confidence 45577888777777655433 7788999999998776443 468889998887654433333223347899999
Q ss_pred cEEEEecCCCeEEEEEecCCCCcCeEEeec---CCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCC
Q psy17863 110 SVVISGSQDNTVMMWDVKSRSHHPIQCCLD---SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR 186 (341)
Q Consensus 110 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (341)
+.|+.++.++.|.+||+.+++...+..... +.+..++....++...+|. ....++|++
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~-------------------~~~~~spdg 153 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEI-------------------LKRDWQPLT 153 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEE-------------------EGGGCCCCC
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccc-------------------cccccCCCC
Confidence 999999999999999998765322211110 0111122222222211111 123467887
Q ss_pred ceEEEe------CCCceEEEEccccc------CCCCeEEEEEcc-CCCEEEEeecC------CeEEEEeccccceeeeec
Q psy17863 187 KHIMSA------CGNNVKLWTAEEDY------GQEPIVDACFTR-DCQCILTCSTD------ECLRLFDKATGELLEEYK 247 (341)
Q Consensus 187 ~~~~~~------~~~~i~~~~~~~~~------~~~~i~~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~ 247 (341)
+.++.. ....+.+|++.... +...+..+.|+| +++.|+..+.+ ..|.+||+..++.. .+.
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~ 232 (396)
T 3c5m_A 154 SWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIK 232 (396)
T ss_dssp SHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESS
T ss_pred cceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-Eee
Confidence 766543 23568888876533 345678899999 78877765543 36888888755433 333
Q ss_pred CcccceeEEEEEeCCCCCEEEEecCC-----CcEEEEeeeCCCceEEEEeeeeccceEEEEEcC-CCcEEEEeC------
Q psy17863 248 GHKSGDFRIECCLDSKDSQIFCGSSD-----GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP-TRKHIMSAC------ 315 (341)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~------ 315 (341)
.+.........+|+|+|++|+.++.+ +.|++||+.+++...... .. ... +.|+| ||+++++++
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---~~-~~~-~~~s~~dg~~l~~~~~~~p~~ 307 (396)
T 3c5m_A 233 EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV---MP-PCS-HLMSNFDGSLMVGDGCDAPVD 307 (396)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE---CC-SEE-EEEECSSSSEEEEEECCC---
T ss_pred ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee---CC-CCC-CCccCCCCceEEEecCCccee
Confidence 23211122234899999987776543 459999998876543322 11 123 88999 999888742
Q ss_pred -----------CCcEEEEEccccc
Q psy17863 316 -----------GNNVKLWTAEEDY 328 (341)
Q Consensus 316 -----------d~~i~vw~~~~~~ 328 (341)
+..|++|++.++.
T Consensus 308 ~~~~~~~~~~~~~~i~~~d~~~~~ 331 (396)
T 3c5m_A 308 VADADSYNIENDPFLYVLNTKAKS 331 (396)
T ss_dssp -------CCCCCCEEEEEETTTTB
T ss_pred eccccccccCCCCcEEEEecccCc
Confidence 3679999987654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.80 E-value=5e-18 Score=152.18 Aligned_cols=241 Identities=7% Similarity=-0.053 Sum_probs=155.8
Q ss_pred eeCCcEEEEEEccCCCEEE-----EEeCCCeEEEEcCCCcceeeEecCcccce--eEEEEecCCCEEEEecCCCc-----
Q psy17863 11 CKQGAIRAVRFNVDGSYCL-----TCGSDKKIKLWNPYRNLLLKTYGGHAHEV--NDATAACDSSQIASGASDKS----- 78 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~-----t~~~dg~i~iw~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg~----- 78 (341)
+|...+..++|||||++|| .|+.+..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 3555799999999999999 34445789999999988651 1122222 67899999999999988776
Q ss_pred --------EEEEECCCCc----eeeeecccCccEEEEEEcCCCcEEEEecCCC----eEEEEEecCCCCcCeEEeecCCC
Q psy17863 79 --------VILWEVTTGQ----PVRRWREHASKVTCVKFNEDSSVVISGSQDN----TVMMWDVKSRSHHPIQCCLDSKD 142 (341)
Q Consensus 79 --------i~iw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~ 142 (341)
|++|++.+++ .+.....+...+..+.|+|||++|+..+.++ .|.+|+..+
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~-------------- 261 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE-------------- 261 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC--------------
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC--------------
Confidence 9999998876 3333344556789999999999988877654 333332211
Q ss_pred ceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCE
Q psy17863 143 SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQC 222 (341)
Q Consensus 143 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (341)
++ ...+... ........+ ++|.+
T Consensus 262 -------------------~~-~~~l~~~------------------------------------~~~~~~~~~-~~g~l 284 (695)
T 2bkl_A 262 -------------------KD-FRLLVKG------------------------------------VGAKYEVHA-WKDRF 284 (695)
T ss_dssp -------------------SS-CEEEEEC------------------------------------SSCCEEEEE-ETTEE
T ss_pred -------------------Cc-eEEeecC------------------------------------CCceEEEEe-cCCcE
Confidence 11 1111110 011122223 34442
Q ss_pred EEEee---cCCeEEEEeccccce--eeeecCc--ccceeEEEEEeCCCCCEEEEecCCCcEEEEeee-CCCceEEEEeee
Q psy17863 223 ILTCS---TDECLRLFDKATGEL--LEEYKGH--KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV-DSSQISTLIHSV 294 (341)
Q Consensus 223 l~~~~---~d~~i~i~d~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~ 294 (341)
++... .++.|.+||+.+++. ...+..+ ...+..+ +++ ++.++++...|+..++|.+. +++....+.. .
T Consensus 285 ~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~--~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~ 360 (695)
T 2bkl_A 285 YVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSV--SIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQL-P 360 (695)
T ss_dssp EEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEE--EEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCC-S
T ss_pred EEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEE--EEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecC-C
Confidence 33332 357899999877653 2333333 3334444 555 67788899999999988776 4555555541 2
Q ss_pred eccceEEEEEcCCCcEEEE----eC-CCcEEEEEccccc
Q psy17863 295 GKAVVNSLCSHPTRKHIMS----AC-GNNVKLWTAEEDY 328 (341)
Q Consensus 295 ~~~~v~~~~~~~~~~~l~~----~~-d~~i~vw~~~~~~ 328 (341)
....+..+.++|+++.++. .. .+.|++|++.++.
T Consensus 361 ~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 361 GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 2567888899999987762 23 5789999987653
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.6e-17 Score=131.94 Aligned_cols=248 Identities=9% Similarity=0.065 Sum_probs=168.2
Q ss_pred CCCeEEEEcCCCcceeeEec------CcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEc
Q psy17863 33 SDKKIKLWNPYRNLLLKTYG------GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFN 106 (341)
Q Consensus 33 ~dg~i~iw~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~ 106 (341)
.++.|.++|.++++....+. ........+.+. +++.+++...++.|.+||..+++.+.++. .......++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 37899999999888765441 122345677774 45556666678999999999999988885 34667899998
Q ss_pred CCCcEEEEecCCCeEEEEEecCCCCc--------------CeEEeecCCCceEEEee--ccCeEEEEEccCCcceeeeEe
Q psy17863 107 EDSSVVISGSQDNTVMMWDVKSRSHH--------------PIQCCLDSKDSQIFCGS--SDGKIYKWQLVDSSQISTLIH 170 (341)
Q Consensus 107 ~~~~~l~~~~~d~~i~iwd~~~~~~~--------------~~~~~~~~~~~~~~~~~--~~g~i~~~d~~~~~~~~~~~~ 170 (341)
++++..++...++.|.+||+.+.+.. +..... .++.++++. .++.|.++|+.+.+....+..
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~ 170 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI 170 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC
T ss_pred CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc
Confidence 88855555447899999998875421 111111 233444444 367777777776655443321
Q ss_pred eecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecC----------CeEEEEecccc
Q psy17863 171 SVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTD----------ECLRLFDKATG 240 (341)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------~~i~i~d~~~~ 240 (341)
......++++|+|++++++..+ +.|.++|..++
T Consensus 171 -------------------------------------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~ 213 (328)
T 3dsm_A 171 -------------------------------------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF 213 (328)
T ss_dssp -------------------------------------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT
T ss_pred -------------------------------------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC
Confidence 1123456677777766666554 78999999988
Q ss_pred ceeeeecCcc-cceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcC-CCcEEEEe----
Q psy17863 241 ELLEEYKGHK-SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP-TRKHIMSA---- 314 (341)
Q Consensus 241 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~---- 314 (341)
+....+.... .....+ +++|+++.++++.. .|.+||..+++................++++| ++.++++.
T Consensus 214 ~v~~~~~~~~g~~p~~l--a~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y 289 (328)
T 3dsm_A 214 TVEKQFKFKLGDWPSEV--QLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDY 289 (328)
T ss_dssp EEEEEEECCTTCCCEEE--EECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTS
T ss_pred eEEEEEecCCCCCceeE--EEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEccccc
Confidence 8776665322 234455 89999999888765 89999998877532111001245688999999 67777776
Q ss_pred C-CCcEEEEEcc
Q psy17863 315 C-GNNVKLWTAE 325 (341)
Q Consensus 315 ~-d~~i~vw~~~ 325 (341)
. ++.|.+|+.+
T Consensus 290 ~~~~~V~v~d~~ 301 (328)
T 3dsm_A 290 QQQGIVYRYSPQ 301 (328)
T ss_dssp SSEEEEEEECTT
T ss_pred ccCCEEEEECCC
Confidence 6 8899999987
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-17 Score=146.65 Aligned_cols=287 Identities=11% Similarity=0.039 Sum_probs=172.1
Q ss_pred eeEEeeeCCcEE---------EEEEc--cCCCE-EEEEeC-CCeEEEEcCC--CcceeeEecC-----cccceeEEEEec
Q psy17863 6 VQTIDCKQGAIR---------AVRFN--VDGSY-CLTCGS-DKKIKLWNPY--RNLLLKTYGG-----HAHEVNDATAAC 65 (341)
Q Consensus 6 ~~~l~~h~~~v~---------~~~~~--~~~~~-l~t~~~-dg~i~iw~~~--~~~~~~~~~~-----~~~~v~~~~~~~ 65 (341)
.+.+..|...+. ...|+ |||++ |+.++. +..|.++++. .......+.. |...+..++|+|
T Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp 139 (662)
T 3azo_A 60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP 139 (662)
T ss_dssp EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET
T ss_pred cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC
Confidence 345555665655 56665 99998 776554 5677777765 2033455555 677899999999
Q ss_pred CCCEEEEecCC----------CcEEEEECCC------Cceeeeec-ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC
Q psy17863 66 DSSQIASGASD----------KSVILWEVTT------GQPVRRWR-EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 128 (341)
Q Consensus 66 ~~~~l~~~~~d----------g~i~iw~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 128 (341)
||+.|++++.+ ..|++||+.+ ++. ..+. .+...+..++|+|||++|+.++.++...-|
T Consensus 140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~---- 214 (662)
T 3azo_A 140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPW---- 214 (662)
T ss_dssp TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTT----
T ss_pred CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCC----
Confidence 99999988876 5899999987 544 4444 556778889999999999987755310000
Q ss_pred CCCcCeEEeecCCCceEEEeeccCeEEEEEcc-CCc--ceeeeEeeecCceEEEEEECCCCceEEEeCC-C--ceEEEEc
Q psy17863 129 RSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLV-DSS--QISTLIHSVGKAVVNSLCSHPTRKHIMSACG-N--NVKLWTA 202 (341)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~i~~~~~ 202 (341)
....|.+||+. ++. ....+.. .....+..+.|+|++++++++.. + .|.+|+.
T Consensus 215 ---------------------~~~~i~~~d~~~~g~~~~~~~l~~-~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~ 272 (662)
T 3azo_A 215 ---------------------EGTELKTARVTEDGRFADTRTLLG-GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDP 272 (662)
T ss_dssp ---------------------TCEEEEEEEECTTSCEEEEEEEEE-ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECT
T ss_pred ---------------------CCcEEEEEEECCCCcccccEEeCC-CCCceEcceEECCCCeEEEEECCCCCeEEEEEEC
Confidence 01234444444 221 1122221 12356889999999996666653 4 4566655
Q ss_pred cccc------CCCC---------eEEEEEccCCCEEEEeecCCeEEEE--eccccceeeeecCcccceeEEEEEeCCCCC
Q psy17863 203 EEDY------GQEP---------IVDACFTRDCQCILTCSTDECLRLF--DKATGELLEEYKGHKSGDFRIECCLDSKDS 265 (341)
Q Consensus 203 ~~~~------~~~~---------i~~~~~~~~~~~l~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (341)
.... +... +..++|+|++++++++.. +.+++| |+.+++ +..+..+...+..+. +++.+.-
T Consensus 273 ~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~-s~~~~~~ 349 (662)
T 3azo_A 273 ATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATL-TVSGTRA 349 (662)
T ss_dssp TTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEE-EEETTEE
T ss_pred CCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEE-ecCCCEE
Confidence 3321 1111 467889999999999988 999999 555444 567777765554331 3333333
Q ss_pred EEEEecCCCc--EEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEc
Q psy17863 266 QIFCGSSDGK--IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 266 ~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~ 324 (341)
++++++.+.. |+++|+.+++.. .+.. .+...+....+.+.....+.+. +..|..|-.
T Consensus 350 ~~~~~~~~~~~~i~~~d~~~g~~~-~l~~-~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~ 409 (662)
T 3azo_A 350 VGVAASPRTAYEVVELDTVTGRAR-TIGA-RHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY 409 (662)
T ss_dssp EEEEEETTEEEEEEEEETTTCCEE-EEES-CCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred EEEEcCCCCCCEEEEEECCCCceE-Eeec-CCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence 3444555544 555555566543 3321 2333333333444444444444 345655554
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=8.4e-17 Score=133.13 Aligned_cols=211 Identities=11% Similarity=0.066 Sum_probs=137.0
Q ss_pred cEEEEEEccCCCE--EEEEe-------------CCCeEEEEcCC-CcceeeEec----CcccceeEEEEecCCCEEEEec
Q psy17863 15 AIRAVRFNVDGSY--CLTCG-------------SDKKIKLWNPY-RNLLLKTYG----GHAHEVNDATAACDSSQIASGA 74 (341)
Q Consensus 15 ~v~~~~~~~~~~~--l~t~~-------------~dg~i~iw~~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~ 74 (341)
.+.+++|+|||++ ++++. .+|.+.+|++. +++....+. .+...+.+++|+|||++|+++.
T Consensus 84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~ 163 (365)
T 1jof_A 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence 3566899999994 55553 68999999987 465544443 2456789999999999888765
Q ss_pred -CCCcEEEEECC-CCcee--eeec--ccCccEEEEEEcCCCcEEEEecC-CCeEEEEEecCCCCcCeEEeecCCCceEEE
Q psy17863 75 -SDKSVILWEVT-TGQPV--RRWR--EHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQCCLDSKDSQIFC 147 (341)
Q Consensus 75 -~dg~i~iw~~~-~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 147 (341)
.++.|.+|++. +++.. ..+. .|...+..++|+|+|+++++++. ++.|.+|++....
T Consensus 164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~----------------- 226 (365)
T 1jof_A 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT----------------- 226 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT-----------------
T ss_pred CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCC-----------------
Confidence 46789999998 67643 2333 23567899999999998887764 6788888875321
Q ss_pred eeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCC------CeEEEE-EccCC
Q psy17863 148 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQE------PIVDAC-FTRDC 220 (341)
Q Consensus 148 ~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------~i~~~~-~~~~~ 220 (341)
|.+.. .. ..+...|.+. ..+.. .+..++ |+|||
T Consensus 227 ----g~~~~----------~~---------~~~~~~~~~~-----------------~g~~~~~~~~~~~~~i~~~spdG 266 (365)
T 1jof_A 227 ----HMPVY----------TH---------HSFPLIPPGI-----------------PDRDPETGKGLYRADVCALTFSG 266 (365)
T ss_dssp ----CCEEE----------EE---------EEEESSCTTC-----------------CCBCTTTSSBSEEEEEEEECTTS
T ss_pred ----CcEEE----------cc---------ceEEcCCCCc-----------------CCcccccccccccccEEEECCCC
Confidence 00000 00 0000000000 00000 356677 88888
Q ss_pred CEEEEeecCC------eEEEEecc-ccceee---eecCcccceeEEEEEeCC---CCCEEEEecCC-CcEEEEeeeCC
Q psy17863 221 QCILTCSTDE------CLRLFDKA-TGELLE---EYKGHKSGDFRIECCLDS---KDSQIFCGSSD-GKIYKWQLVDS 284 (341)
Q Consensus 221 ~~l~~~~~d~------~i~i~d~~-~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~l~~~~~d-g~i~iwd~~~~ 284 (341)
++|+++..+. .|.+|++. +++... ....+......+ +++| +|++|++++.+ +.|.+|++...
T Consensus 267 ~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~--a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 267 KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSN--AVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCC--CEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccc--eecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 8777665432 89999986 555433 133333334444 7888 89999988764 89999998765
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-15 Score=123.23 Aligned_cols=264 Identities=8% Similarity=-0.007 Sum_probs=180.8
Q ss_pred EEccCCCEEEEEeC--CC---eEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEec----------CCCcEEEEEC
Q psy17863 20 RFNVDGSYCLTCGS--DK---KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA----------SDKSVILWEV 84 (341)
Q Consensus 20 ~~~~~~~~l~t~~~--dg---~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~ 84 (341)
...|+++++.+... .. .|.++|..+++.+.++.....+ .++++||+++++++. .++.|.+||.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 44578887777653 22 8899999999988888755444 899999999999886 3678999999
Q ss_pred CCCceeeeeccc-------CccEEEEEEcCCCcEEEEecC--CCeEEEEEecCCCCcCe-EE------eecCCCceEEEe
Q psy17863 85 TTGQPVRRWREH-------ASKVTCVKFNEDSSVVISGSQ--DNTVMMWDVKSRSHHPI-QC------CLDSKDSQIFCG 148 (341)
Q Consensus 85 ~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~------~~~~~~~~~~~~ 148 (341)
.+.+.+..+... ......++|+|||++|+.+.. ++.|.++| .+++.... .. ........+++.
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~ 183 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLL 183 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEE
Confidence 988887766432 123457999999999998874 57899999 87653211 10 011122355667
Q ss_pred eccCeEEEEEccCCcceeeeEe---eecCce-EEEEEECCCC-ceEEEeCCCceEEEEccccc-----------------
Q psy17863 149 SSDGKIYKWQLVDSSQISTLIH---SVGKAV-VNSLCSHPTR-KHIMSACGNNVKLWTAEEDY----------------- 206 (341)
Q Consensus 149 ~~~g~i~~~d~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~----------------- 206 (341)
+.||.+.++|. +++....... ...... .....+.+++ .+++....+.+.+.|+....
T Consensus 184 ~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~ 262 (373)
T 2mad_H 184 CAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKAD 262 (373)
T ss_pred cCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCccccc
Confidence 78999999999 7665532210 011111 1223344443 33444455677777764321
Q ss_pred --CCCCeEEEEEccCCCEEEEeec----------CCeEEEEeccccceeeeecCcccceeEEEEEeCCCCC-EEEEec-C
Q psy17863 207 --GQEPIVDACFTRDCQCILTCST----------DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS-QIFCGS-S 272 (341)
Q Consensus 207 --~~~~i~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~ 272 (341)
.......+.++|+++.+++... ++.|.++|..+++.+..+.... ....+ +++|||+ +++++. .
T Consensus 263 ~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i--~~s~Dg~~~l~v~~~~ 339 (373)
T 2mad_H 263 TWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAI--SVAQDGGPDLYALSAG 339 (373)
T ss_pred ceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeE--EECCCCCeEEEEEcCC
Confidence 1122344788999988887653 3579999999999988886433 34455 8999999 777776 5
Q ss_pred CCcEEEEeeeCCCceEEE
Q psy17863 273 DGKIYKWQLVDSSQISTL 290 (341)
Q Consensus 273 dg~i~iwd~~~~~~~~~~ 290 (341)
++.|.++|..+++.+..+
T Consensus 340 ~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 340 TEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCeEEEEECCCCCEEeee
Confidence 899999999999988874
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-15 Score=129.32 Aligned_cols=286 Identities=10% Similarity=0.111 Sum_probs=194.1
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCC--CcceeeEecCcccceeEEEEe----cCCCEEEEecC-C
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPY--RNLLLKTYGGHAHEVNDATAA----CDSSQIASGAS-D 76 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-d 76 (341)
+.+.++.. ...+..+.|+|||+++++++.|+.|.+||+. +++.+.++.... ....++|+ |||+++++++. +
T Consensus 188 ~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~ 265 (567)
T 1qks_A 188 EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWP 265 (567)
T ss_dssp CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEET
T ss_pred eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccC
Confidence 34555553 3356799999999999999999999999996 788888887543 45789999 69999888765 5
Q ss_pred CcEEEEECCCCceeeeecc----------cCc-cEEEEEEcCCCc-EEEEecCCCeEEEEEecCCCC----------cCe
Q psy17863 77 KSVILWEVTTGQPVRRWRE----------HAS-KVTCVKFNEDSS-VVISGSQDNTVMMWDVKSRSH----------HPI 134 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~----------~~~ 134 (341)
+++.++|..+.+.+..+.. |.. .+..+..++++. +++....+|.|.++|...... .+.
T Consensus 266 ~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~ 345 (567)
T 1qks_A 266 PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH 345 (567)
T ss_dssp TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEE
T ss_pred CeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecccccc
Confidence 9999999999988876642 222 577888888654 455566779999999865421 111
Q ss_pred EEeecCCCceEEEe-eccCeEEEEEccCCcceeeeEe-eecCceEEEE-EECCCCc-eEEEe--CCCceEEEEcccccCC
Q psy17863 135 QCCLDSKDSQIFCG-SSDGKIYKWQLVDSSQISTLIH-SVGKAVVNSL-CSHPTRK-HIMSA--CGNNVKLWTAEEDYGQ 208 (341)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~g~i~~~d~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~-~~~~~--~~~~i~~~~~~~~~~~ 208 (341)
...+.+++.+++++ ..++.|.++|+.+++....+.. .....+-... .++|++. ..++. .++.|.+++.....+.
T Consensus 346 d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~ 425 (567)
T 1qks_A 346 DGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP 425 (567)
T ss_dssp EEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred CceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCc
Confidence 22344455555554 4688999999999887666543 1111110111 2578744 44444 2478999998763321
Q ss_pred --------------CCeEEEEEccCCCEEEEeec-------CCeEEEEecccc-----cee-eeec-----Cc-ccceeE
Q psy17863 209 --------------EPIVDACFTRDCQCILTCST-------DECLRLFDKATG-----ELL-EEYK-----GH-KSGDFR 255 (341)
Q Consensus 209 --------------~~i~~~~~~~~~~~l~~~~~-------d~~i~i~d~~~~-----~~~-~~~~-----~~-~~~~~~ 255 (341)
..-..+..+|+++++.+... .+.|.++|+.+. ... ..+. +. ...-..
T Consensus 426 ~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 505 (567)
T 1qks_A 426 DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRV 505 (567)
T ss_dssp TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEE
T ss_pred cccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcce
Confidence 11133667999999988663 358999999876 211 2221 00 112234
Q ss_pred EEEEeCCCCCEEEEec-----CCCcEEEEeeeCCCceEEEE
Q psy17863 256 IECCLDSKDSQIFCGS-----SDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 256 ~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~ 291 (341)
..+.|+++|+++..+. .++.|.|+|..+++.+..++
T Consensus 506 ~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 506 VQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp EEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred EeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 4558999999877663 37999999999998877776
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.76 E-value=8.8e-15 Score=118.40 Aligned_cols=258 Identities=9% Similarity=0.065 Sum_probs=158.4
Q ss_pred EeeeCCcEEEEEEccCCCEEEE-------EeCCCeEEEEcCCCcceeeEec----CcccceeEEEEecC-CCEEEEecCC
Q psy17863 9 IDCKQGAIRAVRFNVDGSYCLT-------CGSDKKIKLWNPYRNLLLKTYG----GHAHEVNDATAACD-SSQIASGASD 76 (341)
Q Consensus 9 l~~h~~~v~~~~~~~~~~~l~t-------~~~dg~i~iw~~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~~d 76 (341)
+...-....+++|+++|+++++ +..++.|.+||..+++...... ++...+..++++++ ++++++.. .
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~ 91 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-R 91 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-T
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-C
Confidence 3444556789999999988887 5678999999987776543221 25567899999999 76555544 4
Q ss_pred CcEEEEECCCCceeee-ecc----cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeecc
Q psy17863 77 KSVILWEVTTGQPVRR-WRE----HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSD 151 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (341)
+.|.+||.+ ++.... ... ....+.++++++++++.++...++.... +..... ....
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~-~~~~~~-----------------~~~~ 152 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPA-DYTRSM-----------------QEKF 152 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTS-CCCBTT-----------------SSSC
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccc-cccccc-----------------cCCC
Confidence 469999988 665433 221 1235789999999987776654421000 000000 0011
Q ss_pred CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEc----cCCCEEEEe-
Q psy17863 152 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFT----RDCQCILTC- 226 (341)
Q Consensus 152 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~- 226 (341)
+.|..++.. ++. ..+... ......++++ |+++.++++
T Consensus 153 ~~l~~~~~~-g~~-~~~~~~------------------------------------~~~~~~i~~~~~~d~dg~~l~v~~ 194 (314)
T 1pjx_A 153 GSIYCFTTD-GQM-IQVDTA------------------------------------FQFPNGIAVRHMNDGRPYQLIVAE 194 (314)
T ss_dssp EEEEEECTT-SCE-EEEEEE------------------------------------ESSEEEEEEEECTTSCEEEEEEEE
T ss_pred CeEEEECCC-CCE-EEeccC------------------------------------CCCcceEEEecccCCCCCEEEEEE
Confidence 223333322 111 111000 0123445666 666544443
Q ss_pred ecCCeEEEEecc-ccc-----eeeeecCcc-cceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccce
Q psy17863 227 STDECLRLFDKA-TGE-----LLEEYKGHK-SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVV 299 (341)
Q Consensus 227 ~~d~~i~i~d~~-~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 299 (341)
..++.|.+||.. +++ ....+..+. .....+ +++++|++.++...++.|.+||..+++.+..+. .+...+
T Consensus 195 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i--~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~ 270 (314)
T 1pjx_A 195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM--DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKP 270 (314)
T ss_dssp TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE--EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--CSSSCE
T ss_pred CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce--EECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe--CCCCCc
Confidence 456778888865 332 222333332 333444 889999888887788899999987777777766 455789
Q ss_pred EEEEEcCCCcEEE-EeC-CCcEEEEEccccc
Q psy17863 300 NSLCSHPTRKHIM-SAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 300 ~~~~~~~~~~~l~-~~~-d~~i~vw~~~~~~ 328 (341)
.+++|+|+++.|. +.. ++.|..|++....
T Consensus 271 ~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 271 SNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred eeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 9999999999554 444 7799999987543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.4e-14 Score=113.41 Aligned_cols=270 Identities=9% Similarity=-0.006 Sum_probs=182.7
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceee-EecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCcee
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLK-TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV 90 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 90 (341)
....+.++++.++|+++++...++.|.+||.. ++... .+......+..+++.++++++++...++.|..+|.. ++..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 45688999999999988877778999999987 54432 223334678999999999888877778889999987 5543
Q ss_pred e-eecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeE
Q psy17863 91 R-RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 169 (341)
Q Consensus 91 ~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 169 (341)
. ........+..+++.+++++.++...++.|..+|.. ++ +..+...
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-----------------------~~~~~~~--------- 142 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT-----------------------IYEYDLP--------- 142 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-----------------------EEEEECS---------
T ss_pred EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC-----------------------EEEccCC---------
Confidence 2 222234678899999999887777667788877765 22 1111110
Q ss_pred eeecCceEEEEEECCCCceEEEeC-CCceEEEEcccc-------cCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccc
Q psy17863 170 HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED-------YGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGE 241 (341)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 241 (341)
.....+..+++.+++++.++.. ++.+..++.... .....+..++++++|+++++....+.|.+||. +++
T Consensus 143 --~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~ 219 (300)
T 2qc5_A 143 --NKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE 219 (300)
T ss_dssp --STTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred --CCCCCceeEEECCCCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc
Confidence 0123467788888888666655 366777766321 12345788999999987777666788999998 454
Q ss_pred eeee-ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEE
Q psy17863 242 LLEE-YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVK 320 (341)
Q Consensus 242 ~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~ 320 (341)
.... +..+...+..+ +++++|++.++...++.|..++. +++. ..+........+.+++++++|+++++... .|.
T Consensus 220 ~~~~~~~~~~~~~~~i--~~d~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~i~ 294 (300)
T 2qc5_A 220 ISEYDIPTPNARPHAI--TAGKNSEIWFTEWGANQIGRITN-DNTI-QEYQLQTENAEPHGITFGKDGSVWFALKC-KIG 294 (300)
T ss_dssp EEEEECSSTTCCEEEE--EECSTTCEEEEETTTTEEEEECT-TSCE-EEEECCSTTCCCCCEEECTTSCEEEECSS-EEE
T ss_pred EEEEECCCCCCCceEE--EECCCCCEEEeccCCCeEEEECC-CCcE-EEEECCccCCccceeEeCCCCCEEEEccC-ceE
Confidence 4332 22233344455 88999987777767789999997 4443 33332123456889999999987666544 565
Q ss_pred EEEc
Q psy17863 321 LWTA 324 (341)
Q Consensus 321 vw~~ 324 (341)
.++.
T Consensus 295 ~~~p 298 (300)
T 2qc5_A 295 KLNL 298 (300)
T ss_dssp EEEE
T ss_pred EeCC
Confidence 5554
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-15 Score=125.14 Aligned_cols=230 Identities=10% Similarity=0.113 Sum_probs=147.6
Q ss_pred CcEEEEEEccCCCEEEEEeCC---C--eEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCC------------
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSD---K--KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD------------ 76 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~d---g--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------ 76 (341)
..+..++|+|||++|+.++.+ + .|.+|++.+++...... +.. +..++|+||++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 357789999999999987754 3 48888888777655444 334 9999999999998887632
Q ss_pred ---------------CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCC
Q psy17863 77 ---------------KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSK 141 (341)
Q Consensus 77 ---------------g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 141 (341)
..|.+||+.+++.+..+.. . .+..+.|+|++ +++++..++. .... .
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~-------~~~~--~------- 197 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREI-------IPQY--F------- 197 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCS-------SCCS--S-------
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccc-------cccc--c-------
Confidence 5699999988876455554 3 78899999999 7777654421 0000 0
Q ss_pred CceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC---------CceEEEEcccc------c
Q psy17863 142 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG---------NNVKLWTAEED------Y 206 (341)
Q Consensus 142 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~------~ 206 (341)
....|..+| +++ ...+... ..+..+ +|+|+.++.... ..+.+|+ ... .
T Consensus 198 --------~~~~l~~~d--~~~-~~~l~~~---~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~ 260 (347)
T 2gop_A 198 --------KFWDIYIWE--DGK-EEKMFEK---VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDE 260 (347)
T ss_dssp --------CCEEEEEEE--TTE-EEEEEEE---ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTT
T ss_pred --------ccccEEEeC--CCc-eEEeccC---cceeeE--CCCCCEEEEEEccccCCccccceEEEEC-CCceEecccc
Confidence 011222333 211 2222211 223333 888887766542 2566776 221 1
Q ss_pred CCCCeEE-EEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcE-EEEeeeCC
Q psy17863 207 GQEPIVD-ACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKI-YKWQLVDS 284 (341)
Q Consensus 207 ~~~~i~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i-~iwd~~~~ 284 (341)
+...+.. +.|+ ++ ++++++.++.+++| +.+++.. .+..+...+..+ ++++ .++++++.++.. .+|.+. +
T Consensus 261 ~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~--~~s~--~~~~~~~~~~~~~~l~~~~-g 331 (347)
T 2gop_A 261 VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGF--DVDE--IVVYLKETATRLRELFTWD-G 331 (347)
T ss_dssp CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEE--EESS--SEEEEEECSSSCCEEEEES-S
T ss_pred CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEee--eeeC--cEEEEEcCCCChHHheEeC-C
Confidence 3456775 8999 88 88999999999999 8766553 333345556655 7888 677777777665 777776 4
Q ss_pred CceEEEE
Q psy17863 285 SQISTLI 291 (341)
Q Consensus 285 ~~~~~~~ 291 (341)
+ ...+.
T Consensus 332 ~-~~~lt 337 (347)
T 2gop_A 332 E-EKQLT 337 (347)
T ss_dssp S-EEECC
T ss_pred c-EEEec
Confidence 3 34443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-15 Score=119.62 Aligned_cols=202 Identities=14% Similarity=0.250 Sum_probs=141.0
Q ss_pred eCCcEEEEEE-ccCCCEEEEEeC-CCeEEEEcCCCcceeeEec-CcccceeEEEEecCCCEEEEecCCCcEEEEECCCCc
Q psy17863 12 KQGAIRAVRF-NVDGSYCLTCGS-DKKIKLWNPYRNLLLKTYG-GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 88 (341)
Q Consensus 12 h~~~v~~~~~-~~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 88 (341)
|...+..+++ .++++++++... ++.|.+|| .+++.+..+. .+...+..++++|+++++++...++.|.+||. +++
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 152 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGN 152 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSC
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCC
Confidence 4457899999 577776666643 78999999 5677666664 34457899999999998888788899999995 456
Q ss_pred eeeeec--ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCccee
Q psy17863 89 PVRRWR--EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 166 (341)
Q Consensus 89 ~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~ 166 (341)
.+..+. .+...+..++++++++++++...++.|.+||..... +..+. .
T Consensus 153 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~-----------------------~~~~~--~----- 202 (286)
T 1q7f_A 153 VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY-----------------------LRQIG--G----- 202 (286)
T ss_dssp EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE-----------------------EEEES--C-----
T ss_pred EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCE-----------------------EEEEc--c-----
Confidence 555553 344568999999999887777778888888853210 00000 0
Q ss_pred eeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCC-eEEEEeccccceeee
Q psy17863 167 TLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDE-CLRLFDKATGELLEE 245 (341)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~ 245 (341)
. . ....+..++++++|+++++...++ .|.+||. +++.+..
T Consensus 203 ----~-g---------------------------------~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~ 243 (286)
T 1q7f_A 203 ----E-G---------------------------------ITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISA 243 (286)
T ss_dssp ----T-T---------------------------------TSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEE
T ss_pred ----C-C---------------------------------ccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEE
Confidence 0 0 012356677888888777777775 9999995 4666666
Q ss_pred ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCC
Q psy17863 246 YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSS 285 (341)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (341)
+..+........++++|+|+++++ +.++.|++|++....
T Consensus 244 ~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 244 LESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred EcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 655443322334488999987777 579999999976543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-15 Score=138.20 Aligned_cols=243 Identities=14% Similarity=0.027 Sum_probs=153.0
Q ss_pred eCCcEEEEEEccCCCEEEEEeCC-----CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCc--------
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSD-----KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKS-------- 78 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~d-----g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------- 78 (341)
|...+..++|||||++||.++.+ ..|++||+.+++.+... .+...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 33478899999999999987654 46999999998875532 12223467899999 98888876554
Q ss_pred ------EEEEECCCCce----eeeecccCccEEEEEEcCCCcEEEEecCCC-----eEEEEEecCCCCcCeEEeecCCCc
Q psy17863 79 ------VILWEVTTGQP----VRRWREHASKVTCVKFNEDSSVVISGSQDN-----TVMMWDVKSRSHHPIQCCLDSKDS 143 (341)
Q Consensus 79 ------i~iw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~ 143 (341)
|++|++.+++. +.....+...+..+.|+|||++|+..+.++ .|.+||+.++..
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~------------ 306 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI------------ 306 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE------------
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC------------
Confidence 88999987653 222223334588999999999888776543 455555443210
Q ss_pred eEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEE
Q psy17863 144 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCI 223 (341)
Q Consensus 144 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l 223 (341)
+....+... ....... ++|+|+.|
T Consensus 307 -------------------~~~~~l~~~------------------------------------~~~~~~~-~~~dg~~l 330 (741)
T 1yr2_A 307 -------------------GPVTALIPD------------------------------------LKAQWDF-VDGVGDQL 330 (741)
T ss_dssp -------------------CCCEEEECS------------------------------------SSSCEEE-EEEETTEE
T ss_pred -------------------cccEEecCC------------------------------------CCceEEE-EeccCCEE
Confidence 101111110 0011111 23566666
Q ss_pred EEeec----CCeEEEEecccc--ceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeee-CCCceEEEEeeeec
Q psy17863 224 LTCST----DECLRLFDKATG--ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV-DSSQISTLIHSVGK 296 (341)
Q Consensus 224 ~~~~~----d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~ 296 (341)
+..+. ++.|.+||+.++ +....+..+...+..+ +++ ++.++++...|+..+||.+. +++....+.. ...
T Consensus 331 ~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~--~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~-~~~ 406 (741)
T 1yr2_A 331 WFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESV--GIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSL-PGI 406 (741)
T ss_dssp EEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEE--EEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBC-SSS
T ss_pred EEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEE--EEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccC-CCC
Confidence 55554 456999998774 2333334444433333 455 56678888899988888765 4555555541 235
Q ss_pred cceEEEEEcCCCcEEEE----eC-CCcEEEEEccccc
Q psy17863 297 AVVNSLCSHPTRKHIMS----AC-GNNVKLWTAEEDY 328 (341)
Q Consensus 297 ~~v~~~~~~~~~~~l~~----~~-d~~i~vw~~~~~~ 328 (341)
..+..+.++|+++.|+. .. .++|++||+.++.
T Consensus 407 ~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 407 GSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp CEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 67889999999876652 22 5789999987643
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-14 Score=117.52 Aligned_cols=244 Identities=7% Similarity=0.028 Sum_probs=156.8
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeec
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 94 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 94 (341)
....+.+. +++.+++...++.|.+||..+++.+.++. .......++++++++.+++...++.|.+||..+++....+.
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 45677774 35556666668999999999999988886 34668899999998554554478999999999998877665
Q ss_pred ccC-----ccEEEEEEcCCCcEEEEec-CCCeEEEEEecCCCCc--------CeEEeecCCCceEEEeecc---------
Q psy17863 95 EHA-----SKVTCVKFNEDSSVVISGS-QDNTVMMWDVKSRSHH--------PIQCCLDSKDSQIFCGSSD--------- 151 (341)
Q Consensus 95 ~~~-----~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~--------~~~~~~~~~~~~~~~~~~~--------- 151 (341)
... .....+++ .++..+++.. .++.|.++|+.+++.. +......+.+..+++...+
T Consensus 123 ~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~ 201 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYE 201 (328)
T ss_dssp CTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBC
T ss_pred cCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccC
Confidence 332 14456777 3444444433 4889999998876421 1112222223333333333
Q ss_pred -CeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCC
Q psy17863 152 -GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDE 230 (341)
Q Consensus 152 -g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 230 (341)
+.|.++|..+.+....+.... ......++++|++++++++..
T Consensus 202 ~~~v~~id~~t~~v~~~~~~~~-----------------------------------g~~p~~la~~~d~~~lyv~~~-- 244 (328)
T 3dsm_A 202 APSLYRIDAETFTVEKQFKFKL-----------------------------------GDWPSEVQLNGTRDTLYWINN-- 244 (328)
T ss_dssp CCEEEEEETTTTEEEEEEECCT-----------------------------------TCCCEEEEECTTSCEEEEESS--
T ss_pred CceEEEEECCCCeEEEEEecCC-----------------------------------CCCceeEEEecCCCEEEEEcc--
Confidence 678888877665443332110 124567778887777777654
Q ss_pred eEEEEeccccceeee--ecCcccceeEEEEEeCC-CCCEEEEe----cCCCcEEEEeeeCCCceEEEEeeeeccceEEEE
Q psy17863 231 CLRLFDKATGELLEE--YKGHKSGDFRIECCLDS-KDSQIFCG----SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLC 303 (341)
Q Consensus 231 ~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 303 (341)
.|.+||..+++.... +.........+ +++| ++++.++. ..++.|.+||.. ++.+.++.. ......++
T Consensus 245 ~v~~~d~~t~~~~~~~~~~~~~~~p~gi--~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~---G~~P~~~~ 318 (328)
T 3dsm_A 245 DIWRMPVEADRVPVRPFLEFRDTKYYGL--TVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV---GIIPGAFC 318 (328)
T ss_dssp SEEEEETTCSSCCSSCSBCCCSSCEEEE--EECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE---EESEEEEE
T ss_pred EEEEEECCCCceeeeeeecCCCCceEEE--EEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe---ccCcceEE
Confidence 899999988775321 12112334445 8998 55555565 578999999987 888888872 22334555
Q ss_pred E
Q psy17863 304 S 304 (341)
Q Consensus 304 ~ 304 (341)
|
T Consensus 319 ~ 319 (328)
T 3dsm_A 319 W 319 (328)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-15 Score=119.94 Aligned_cols=207 Identities=12% Similarity=0.198 Sum_probs=144.4
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc-eeeEe---------cCcccceeEEEEec-CCCEEEEec-CCCcEE
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL-LLKTY---------GGHAHEVNDATAAC-DSSQIASGA-SDKSVI 80 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~ 80 (341)
-.....++++|+|+++++...++.|++|+..... .+..+ ..+......++++| ++.++++.+ .++.|+
T Consensus 90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 3578899999999988888889999999975442 45555 23445688999999 788888876 689999
Q ss_pred EEECCCCceeeeecccC----------ccEEEEEEcCC-CcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEee
Q psy17863 81 LWEVTTGQPVRRWREHA----------SKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGS 149 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~----------~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 149 (341)
+|+ .+++.+..+.... .....++++|+ +.++++...++.|++|+..+++
T Consensus 170 ~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~------------------- 229 (329)
T 3fvz_A 170 QFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE------------------- 229 (329)
T ss_dssp EEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC-------------------
T ss_pred EEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc-------------------
Confidence 999 5677776664322 33788999998 7777777778888888876433
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecC
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTD 229 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 229 (341)
.+..+........+..++++| +.. +..+|+..++...+
T Consensus 230 --------------~~~~~~~~~~~~~~~~~~~~p-g~~---------------------------~~~~g~~~v~~~~~ 267 (329)
T 3fvz_A 230 --------------FVREIKHASFGRNVFAISYIP-GFL---------------------------FAVNGKPYFGDQEP 267 (329)
T ss_dssp --------------EEEEECCTTTTTCEEEEEEET-TEE---------------------------EEEECCCCTTCSCC
T ss_pred --------------EEEEEeccccCCCcceeeecC-CEE---------------------------EEeCCCEEeccCCC
Confidence 111111111112244455555 211 11234444555566
Q ss_pred CeEEEEeccccceeeeec---CcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 230 ECLRLFDKATGELLEEYK---GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 230 ~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
..|++||..+++.+..+. ++......+ +++|+|.++++...++.|++|++..
T Consensus 268 ~~v~~~~~~~g~~~~~~~~~~~~~~~p~~i--a~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 268 VQGFVMNFSSGEIIDVFKPVRKHFDMPHDI--VASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCEEEEETTTCCEEEEECCSSSCCSSEEEE--EECTTSEEEEEESSSCCEEEEEEEE
T ss_pred cEEEEEEcCCCeEEEEEcCCCCccCCeeEE--EECCCCCEEEEECCCCEEEEEeCCc
Confidence 789999999999888873 455555666 8999998888888999999999764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-15 Score=123.99 Aligned_cols=263 Identities=10% Similarity=0.076 Sum_probs=182.4
Q ss_pred cCCCEEEEEeCC-----CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEec----------CCCcEEEEECCCC
Q psy17863 23 VDGSYCLTCGSD-----KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA----------SDKSVILWEVTTG 87 (341)
Q Consensus 23 ~~~~~l~t~~~d-----g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~ 87 (341)
++++.+++.... +.|.++|..+++.+.++.....+ .++++||+++++++. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 466766665542 69999999999999999865555 899999999988876 3678999999999
Q ss_pred ceeeeeccc-------CccEEEEEEcCCCcEEEEecC--CCeEEEEEecCCCCcCeEEe-----ec-CCCceEEEeeccC
Q psy17863 88 QPVRRWREH-------ASKVTCVKFNEDSSVVISGSQ--DNTVMMWDVKSRSHHPIQCC-----LD-SKDSQIFCGSSDG 152 (341)
Q Consensus 88 ~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~-----~~-~~~~~~~~~~~~g 152 (341)
+.+..+.-. ......+.|+||+++++.+.. ++.|.+.|+.+.+....... .. .....+++.+.||
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG 239 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDG 239 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCC
Confidence 988776532 123457899999999998864 57899999988763211111 11 1124566777899
Q ss_pred eEEEEEccCCcceeeeE--eeecCc-eEEEEEECCCCceEEE-eCCCceEEEEccccc-------------------CCC
Q psy17863 153 KIYKWQLVDSSQISTLI--HSVGKA-VVNSLCSHPTRKHIMS-ACGNNVKLWTAEEDY-------------------GQE 209 (341)
Q Consensus 153 ~i~~~d~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~-------------------~~~ 209 (341)
++.+.+..+.+...... ...... ....+.+.+++..++. ...+.+.+.|..... ...
T Consensus 240 ~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~ 319 (426)
T 3c75_H 240 SLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPG 319 (426)
T ss_dssp SEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEEC
T ss_pred CEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccC
Confidence 99888885544432110 000111 1123456777665444 445778888874321 011
Q ss_pred CeEEEEEccCCCEEEEeec----------CCeEEEEeccccceeeeecCcccceeEEEEEeCCCCC-EEEEec-CCCcEE
Q psy17863 210 PIVDACFTRDCQCILTCST----------DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS-QIFCGS-SDGKIY 277 (341)
Q Consensus 210 ~i~~~~~~~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~ 277 (341)
....++++|+++.+++... ++.|.++|..+.+.+..+.... ....+ .++|+++ ++++.. .++.|.
T Consensus 320 g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gi--a~spDg~~~lyv~n~~s~~Vs 396 (426)
T 3c75_H 320 GWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSI--NVSQDAEPLLYALSAGTQTLH 396 (426)
T ss_dssp SSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEE--EECCSSSCEEEEEETTTTEEE
T ss_pred CceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeE--EEccCCCEEEEEEcCCCCeEE
Confidence 1223789999888777643 3579999999999998886433 23444 8999999 888877 599999
Q ss_pred EEeeeCCCceEEE
Q psy17863 278 KWQLVDSSQISTL 290 (341)
Q Consensus 278 iwd~~~~~~~~~~ 290 (341)
++|+.+++.+.++
T Consensus 397 VID~~t~kvv~tI 409 (426)
T 3c75_H 397 IYDAATGEELRSV 409 (426)
T ss_dssp EEETTTCCEEEEE
T ss_pred EEECCCCCEEEEe
Confidence 9999999999887
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=7.8e-15 Score=131.91 Aligned_cols=250 Identities=10% Similarity=0.100 Sum_probs=152.5
Q ss_pred cCCCEEEEEeCC-----CeEEEEcCCCcceeeEe------cCcccceeEEEEecCCCEEEEecCCC-----cEEEEECCC
Q psy17863 23 VDGSYCLTCGSD-----KKIKLWNPYRNLLLKTY------GGHAHEVNDATAACDSSQIASGASDK-----SVILWEVTT 86 (341)
Q Consensus 23 ~~~~~l~t~~~d-----g~i~iw~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~ 86 (341)
|+|++++....+ +.+.+.+...++....+ .+|...+..++|+|||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 889887755432 24555555444433222 13445688999999999998765433 899999999
Q ss_pred CceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCccee
Q psy17863 87 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 166 (341)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~ 166 (341)
++.......+ ..+..++|+|||+.|+.++.++. ....... .-.......|++|++.++....
T Consensus 161 g~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~------~~~~~~~-----------~~~~~~~~~v~~~~l~t~~~~~ 222 (710)
T 2xdw_A 161 AKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQ------DGKSDGT-----------ETSTNLHQKLYYHVLGTDQSED 222 (710)
T ss_dssp TEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCC------SSCCSSS-----------CCCCCCCCEEEEEETTSCGGGC
T ss_pred CCCCcccccC-cccceEEEEeCCCEEEEEEECCc------ccccccc-----------ccccCCCCEEEEEECCCCcccc
Confidence 9876533222 23667999999999998877643 0000000 0000112446666665543221
Q ss_pred eeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeec-----CCeEEEEeccc--
Q psy17863 167 TLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCST-----DECLRLFDKAT-- 239 (341)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~-- 239 (341)
.+..... .+...+..+.|+|||++|+..+. +..|++||+.+
T Consensus 223 ~~v~~~~--------------------------------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~ 270 (710)
T 2xdw_A 223 ILCAEFP--------------------------------DEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQES 270 (710)
T ss_dssp EEEECCT--------------------------------TCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred eEEeccC--------------------------------CCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccc
Confidence 1111100 01223456677777777776554 56899999986
Q ss_pred ----cc-eeeeecCcccceeEEEEEeCCCCCEEEEecC----CCcEEEEeeeCCCc--eEEEEeeeec--cceEEEEEcC
Q psy17863 240 ----GE-LLEEYKGHKSGDFRIECCLDSKDSQIFCGSS----DGKIYKWQLVDSSQ--ISTLIHSVGK--AVVNSLCSHP 306 (341)
Q Consensus 240 ----~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~--~~~~~~~~~~--~~v~~~~~~~ 306 (341)
+. ....+..+...+.. .++++|+.|+..+. .+.|.+||+.+++. ...+. .+. ..+..++|++
T Consensus 271 ~~~~~~~~~~~l~~~~~~~~~---~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~~~~~~~~~~~~~ 345 (710)
T 2xdw_A 271 NGITGILKWVKLIDNFEGEYD---YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV--PEHEKDVLEWVACVR 345 (710)
T ss_dssp SSSCSSCCCEEEECSSSSCEE---EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--CCCSSCEEEEEEEET
T ss_pred cccCCccceEEeeCCCCcEEE---EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc--CCCCCCeEEEEEEEc
Confidence 43 35566666555443 46788887776554 34699999887752 34554 333 3688899998
Q ss_pred CCcEEEEeC-CCc--EEEEEcccc
Q psy17863 307 TRKHIMSAC-GNN--VKLWTAEED 327 (341)
Q Consensus 307 ~~~~l~~~~-d~~--i~vw~~~~~ 327 (341)
++.++++.. ++. |.+|++.++
T Consensus 346 ~~~lv~~~~~~g~~~l~~~~~~~g 369 (710)
T 2xdw_A 346 SNFLVLCYLHDVKNTLQLHDLATG 369 (710)
T ss_dssp TTEEEEEEEETTEEEEEEEETTTC
T ss_pred CCEEEEEEEECCEEEEEEEECCCC
Confidence 888888888 875 555665333
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-13 Score=114.76 Aligned_cols=240 Identities=11% Similarity=0.084 Sum_probs=152.2
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCC--cEEEEECCCCceee
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDK--SVILWEVTTGQPVR 91 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~ 91 (341)
.....|+|+++++++++...++.|++||..+++........ .... ++|+|+++.|+++..++ .|.+++...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 46789999999998888777899999999877765555443 2334 99999999998888766 78888887665433
Q ss_pred ee----cccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceee
Q psy17863 92 RW----REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST 167 (341)
Q Consensus 92 ~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~ 167 (341)
.+ ......+.+++++|++..|+.+..++.|..||..+... .++....
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-----------------------~~~~~~~------ 259 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-----------------------TLIKQLE------ 259 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-----------------------EEEEECC------
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-----------------------EEEeccc------
Confidence 33 22445678899999544555566678888888765430 0000000
Q ss_pred eEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccC-CCEEEEeecCCeEEEEeccccceeeee
Q psy17863 168 LIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRD-CQCILTCSTDECLRLFDKATGELLEEY 246 (341)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~ 246 (341)
...... ..|...++|+|+ +.++++-..++.|+.|+.... +..+
T Consensus 260 --~~g~~~--------------------------------~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~ 303 (409)
T 3hrp_A 260 --LSGSLG--------------------------------TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWF 303 (409)
T ss_dssp --CCSCCC--------------------------------CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEE
T ss_pred --ccCCCC--------------------------------CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEE
Confidence 000000 001114555553 344444444556666664422 1122
Q ss_pred cCcc---------------cceeEEEEEeCCCCCEEEEec-CCCcEEEEeeeCCCceEEEEeeee---------------
Q psy17863 247 KGHK---------------SGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLVDSSQISTLIHSVG--------------- 295 (341)
Q Consensus 247 ~~~~---------------~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~--------------- 295 (341)
.++. .....+ +++++|+++++-. .++.|+.|++.+++. ..+. ++
T Consensus 304 ~g~~~~~g~~dg~~~~~~~~~P~gi--a~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~--g~~~~~g~~~g~~~~~~ 378 (409)
T 3hrp_A 304 CGSATQKTVQDGLREEALFAQPNGM--TVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVA--GQVDVASQIDGTPLEAT 378 (409)
T ss_dssp EECTTCCSCBCEEGGGCBCSSEEEE--EECTTCCEEEEETTTTCEEEEEETTTTEE-EEEE--ECTTCBSCCCBSTTTCC
T ss_pred EeCCCCCCcCCCcccccEeCCCeEE--EEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEe--CCCCCCCcCCCChhceE
Confidence 1111 123344 8999999888877 889999999777653 3343 22
Q ss_pred ccceEEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 296 KAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 296 ~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
-.....+++++++.++++-. +++|+.++++
T Consensus 379 ~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 379 FNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp BSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred eCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 24588999999998888887 8889888763
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-14 Score=112.10 Aligned_cols=226 Identities=11% Similarity=0.129 Sum_probs=153.5
Q ss_pred ceeeeEEeeeC-CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcc-cceeEEEEecCCCEEEEecC-CCcE
Q psy17863 3 YTCVQTIDCKQ-GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA-HEVNDATAACDSSQIASGAS-DKSV 79 (341)
Q Consensus 3 ~~~~~~l~~h~-~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-dg~i 79 (341)
.+.+.++..+. ..+.+++++|+|++++ +.++.|..||. +++.+.++..+. ..+.++.+.++|+++++.+. ++.+
T Consensus 25 G~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v 101 (276)
T 3no2_A 25 KEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTI 101 (276)
T ss_dssp TEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEE
T ss_pred CeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEE
Confidence 35566777666 4789999999999888 34778999998 899999988653 57889999999999999877 7778
Q ss_pred EEEECCCCceeeeecc------cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCe
Q psy17863 80 ILWEVTTGQPVRRWRE------HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGK 153 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 153 (341)
..+|. +|+.+..+.. +......+++.++++++++...++.|..||.+ ++
T Consensus 102 ~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~----------------------- 156 (276)
T 3no2_A 102 LEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ----------------------- 156 (276)
T ss_dssp EEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC-----------------------
T ss_pred EEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC-----------------------
Confidence 88885 6777666542 11234455677888888888878887777765 33
Q ss_pred EEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEE
Q psy17863 154 IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLR 233 (341)
Q Consensus 154 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 233 (341)
.+|..... .....+...++|+.++++..++.|.
T Consensus 157 -~~w~~~~~----------------------------------------------~~~~~~~~~~~g~~~v~~~~~~~v~ 189 (276)
T 3no2_A 157 -LLNSVKLS----------------------------------------------GTPFSSAFLDNGDCLVACGDAHCFV 189 (276)
T ss_dssp -EEEEEECS----------------------------------------------SCCCEEEECTTSCEEEECBTTSEEE
T ss_pred -EEEEEECC----------------------------------------------CCccceeEcCCCCEEEEeCCCCeEE
Confidence 12222211 1123455677888888888888999
Q ss_pred EEeccccceeeeecCcccc----eeEEEEEeCCCCCEEEEec--CC------CcEEEEee-eCCCceEEEEeeeeccceE
Q psy17863 234 LFDKATGELLEEYKGHKSG----DFRIECCLDSKDSQIFCGS--SD------GKIYKWQL-VDSSQISTLIHSVGKAVVN 300 (341)
Q Consensus 234 i~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~--~d------g~i~iwd~-~~~~~~~~~~~~~~~~~v~ 300 (341)
.+|..+|+.+.++..+..+ .........++|+.+++.. .. +..+++++ .+++.+..+.....-+.+.
T Consensus 190 ~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~ 269 (276)
T 3no2_A 190 QLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIS 269 (276)
T ss_dssp EECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCC
T ss_pred EEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCccccccee
Confidence 9999999998888643211 1122236778888877763 21 23455555 5677776666333334455
Q ss_pred EEE
Q psy17863 301 SLC 303 (341)
Q Consensus 301 ~~~ 303 (341)
+++
T Consensus 270 ~~~ 272 (276)
T 3no2_A 270 TIC 272 (276)
T ss_dssp EEE
T ss_pred eee
Confidence 543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-14 Score=113.78 Aligned_cols=208 Identities=10% Similarity=0.045 Sum_probs=140.7
Q ss_pred cceeeEecCcccceeEEEEecCCC-EEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEE
Q psy17863 45 NLLLKTYGGHAHEVNDATAACDSS-QIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMM 123 (341)
Q Consensus 45 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 123 (341)
+..+..+..+.....+++|+|+++ +++++..++.|..|+..++ ...+..+...+.+++++++++++++...++.|.+
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 344555656667788999999998 7788888999999999877 5666667778999999999998888777788888
Q ss_pred EEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcc
Q psy17863 124 WDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 203 (341)
Q Consensus 124 wd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 203 (341)
||..+++... +......
T Consensus 95 ~d~~~g~~~~----------------------------------~~~~~~~----------------------------- 111 (296)
T 3e5z_A 95 QREPGGEWES----------------------------------IADSFEG----------------------------- 111 (296)
T ss_dssp ECSTTCCEEE----------------------------------EECEETT-----------------------------
T ss_pred EcCCCCcEEE----------------------------------EeeccCC-----------------------------
Confidence 8876543100 0000000
Q ss_pred cccCCCCeEEEEEccCCCEEEE----ee-------------cCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCE
Q psy17863 204 EDYGQEPIVDACFTRDCQCILT----CS-------------TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ 266 (341)
Q Consensus 204 ~~~~~~~i~~~~~~~~~~~l~~----~~-------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (341)
.....+..++++|+|+++++ ++ ..+.|..++.. ++. ..+..+......+ +++|+++.
T Consensus 112 --~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi--~~s~dg~~ 185 (296)
T 3e5z_A 112 --KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGL--AFLPSGNL 185 (296)
T ss_dssp --EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEE--EECTTSCE
T ss_pred --CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccE--EECCCCCE
Confidence 00112344566666665555 22 13456666654 433 3333344444555 89999998
Q ss_pred EEEecCCCcEEEEeee-CCCc---eEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEccc
Q psy17863 267 IFCGSSDGKIYKWQLV-DSSQ---ISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 267 l~~~~~dg~i~iwd~~-~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
+++.+.++.|++|++. +++. ...+ ..+...+..++++++|+++++. ++.|.+|+.+.
T Consensus 186 lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~g 246 (296)
T 3e5z_A 186 LVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPDG 246 (296)
T ss_dssp EEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTTS
T ss_pred EEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc-CCeEEEECCCC
Confidence 8888888999999987 4544 2223 1345567789999999988877 88899999764
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-13 Score=114.99 Aligned_cols=288 Identities=9% Similarity=0.035 Sum_probs=180.8
Q ss_pred CCCEEEEEeCCCeEEEEcCCCcceeeEecCcc---------cceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeec
Q psy17863 24 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA---------HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 94 (341)
Q Consensus 24 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 94 (341)
++..+++++.++.|..+|..+++.+..+.... ..+.+. ...++..+++++.++.|..+|.++|+.+....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 35678888889999999999999887765421 222222 22245678888899999999999999887765
Q ss_pred ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeE------------EeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 95 EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ------------CCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
............ +..++.++.++.+..+|.++++..-.. ......++.+++++.++.+..+|..++
T Consensus 131 ~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG 208 (376)
T 3q7m_A 131 VAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQG 208 (376)
T ss_dssp CSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTC
T ss_pred CCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCC
Confidence 433221112222 347788888999999998876521110 111112457888999999999999998
Q ss_pred cceeeeEeeecCce--EEE---EEEC---CCCceEEEeCCCceEEEEccccc-----CCCCeEEEEEccCCCEEEEeecC
Q psy17863 163 SQISTLIHSVGKAV--VNS---LCSH---PTRKHIMSACGNNVKLWTAEEDY-----GQEPIVDACFTRDCQCILTCSTD 229 (341)
Q Consensus 163 ~~~~~~~~~~~~~~--~~~---~~~~---~~~~~~~~~~~~~i~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d 229 (341)
+............. +.. +... .++..++...++.+..+|..+.. .......+.. ++..+++++.+
T Consensus 209 ~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~--~~~~l~~~~~~ 286 (376)
T 3q7m_A 209 QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIV--DGNRIYLVDQN 286 (376)
T ss_dssp CEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEE--ETTEEEEEETT
T ss_pred cEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceE--ECCEEEEEcCC
Confidence 87766543211000 000 0011 13444444456788888876543 1222333333 45678888889
Q ss_pred CeEEEEeccccceeeeecCccc-ceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCC
Q psy17863 230 ECLRLFDKATGELLEEYKGHKS-GDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR 308 (341)
Q Consensus 230 ~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 308 (341)
+.+..+|..+++.+........ ..... .. .+..|+.++.+|.++.+|..+++.+.... .....+.......++
T Consensus 287 g~l~~~d~~tG~~~w~~~~~~~~~~~~~--~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~--~~~~~~~~~~~~~~~ 360 (376)
T 3q7m_A 287 DRVMALTIDGGVTLWTQSDLLHRLLTSP--VL--YNGNLVVGDSEGYLHWINVEDGRFVAQQK--VDSSGFQTEPVAADG 360 (376)
T ss_dssp CCEEEEETTTCCEEEEECTTTTSCCCCC--EE--ETTEEEEECTTSEEEEEETTTCCEEEEEE--CCTTCBCSCCEEETT
T ss_pred CeEEEEECCCCcEEEeecccCCCcccCC--EE--ECCEEEEEeCCCeEEEEECCCCcEEEEEe--cCCCcceeCCEEECC
Confidence 9999999999988776652211 11112 11 25688889999999999999999887776 322223221112244
Q ss_pred cEEEEeC-CCcEEEEE
Q psy17863 309 KHIMSAC-GNNVKLWT 323 (341)
Q Consensus 309 ~~l~~~~-d~~i~vw~ 323 (341)
.|+.++ +|.|..|+
T Consensus 361 -~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 361 -KLLIQAKDGTVYSIT 375 (376)
T ss_dssp -EEEEEBTTSCEEEEE
T ss_pred -EEEEEeCCCEEEEEe
Confidence 555666 99999886
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=4.6e-14 Score=114.92 Aligned_cols=242 Identities=12% Similarity=0.056 Sum_probs=161.4
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEe----------CCCeEEEEcCCCcceeeEecCcc-------cceeEEEEec
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCG----------SDKKIKLWNPYRNLLLKTYGGHA-------HEVNDATAAC 65 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~-------~~v~~~~~~~ 65 (341)
++.+.++..-..+ .++++|||+++++++ .++.|.+||..+++.+.++.... ..-..++|+|
T Consensus 69 ~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp 146 (386)
T 3sjl_D 69 GRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP 146 (386)
T ss_dssp TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred CeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC
Confidence 3556667655555 499999999888765 36789999999999888875321 2456789999
Q ss_pred CCCEEEEecC--CCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC-CCC-----c-----
Q psy17863 66 DSSQIASGAS--DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS-RSH-----H----- 132 (341)
Q Consensus 66 ~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~-----~----- 132 (341)
||++++++.. ++.|.++|+.+++.+.++..... ...+....+.+++.+.||.+.+.++.. ++. .
T Consensus 147 DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~ 223 (386)
T 3sjl_D 147 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE 223 (386)
T ss_dssp TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT
T ss_pred CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccc
Confidence 9999988864 68999999999999888853221 122222334555666666666666654 221 0
Q ss_pred --CeE--EeecCCCceEEEeeccCeEEEEEccCCcc--eeeeEe--------eecCceEEEEEECCCCceEEEeC-----
Q psy17863 133 --PIQ--CCLDSKDSQIFCGSSDGKIYKWQLVDSSQ--ISTLIH--------SVGKAVVNSLCSHPTRKHIMSAC----- 193 (341)
Q Consensus 133 --~~~--~~~~~~~~~~~~~~~~g~i~~~d~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~----- 193 (341)
++. ..+...++.++..+.+|++++.|...... ...+.. .........++++++++.+....
T Consensus 224 ~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~ 303 (386)
T 3sjl_D 224 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDE 303 (386)
T ss_dssp TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCT
T ss_pred cccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccc
Confidence 000 01112455565677789999999876542 222210 00011223467788888877753
Q ss_pred ------CCceEEEEccccc------CCCCeEEEEEccCCC-EEEEee-cCCeEEEEeccccceeeeecCc
Q psy17863 194 ------GNNVKLWTAEEDY------GQEPIVDACFTRDCQ-CILTCS-TDECLRLFDKATGELLEEYKGH 249 (341)
Q Consensus 194 ------~~~i~~~~~~~~~------~~~~i~~~~~~~~~~-~l~~~~-~d~~i~i~d~~~~~~~~~~~~~ 249 (341)
.+.|.++|..+.. -..++..+++++|++ +|++.. .++.|.++|..+++.++++...
T Consensus 304 ~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 304 WRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp TCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred cccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence 2568888887755 234677899999997 666654 4899999999999998888644
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-14 Score=129.83 Aligned_cols=247 Identities=9% Similarity=0.031 Sum_probs=146.4
Q ss_pred ccCCCEEEEEeCCC-----eEEEEcCCCcceeeEec------CcccceeEEEEecCCCEEE-----EecCCCcEEEEECC
Q psy17863 22 NVDGSYCLTCGSDK-----KIKLWNPYRNLLLKTYG------GHAHEVNDATAACDSSQIA-----SGASDKSVILWEVT 85 (341)
Q Consensus 22 ~~~~~~l~t~~~dg-----~i~iw~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~-----~~~~dg~i~iw~~~ 85 (341)
+|+|++++....++ .+.+.+...++....+. +|...+..++|+|||++|+ .|+.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 47899888766543 34444444444333322 3555799999999999998 44456789999999
Q ss_pred CCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcce
Q psy17863 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
+++.+..-.........++|+|||+.|+.++.|.. ..+.. . .......|++|++.++...
T Consensus 156 tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~------~~~~~----------~----~~~~~~~v~~~~l~t~~~~ 215 (695)
T 2bkl_A 156 SGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTD------PSIKV----------D----ERPGYTTIRYHTLGTEPSK 215 (695)
T ss_dssp TCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCC------TTSCG----------G----GGGGGCEEEEEETTSCGGG
T ss_pred CCCCcCCcccCcccccceEEecCCCEEEEEEecCC------CCCcc----------c----cCCCCCEEEEEECCCCchh
Confidence 98865111111111267899999999998887653 00000 0 0011234555555544321
Q ss_pred eeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCC----eEEEEeccccc
Q psy17863 166 STLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDE----CLRLFDKATGE 241 (341)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~ 241 (341)
..+..... .+...+..+.|+|||++|+..+.++ .|++++..+++
T Consensus 216 ~~lv~~~~--------------------------------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~ 263 (695)
T 2bkl_A 216 DTVVHERT--------------------------------GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD 263 (695)
T ss_dssp CEEEECCC--------------------------------CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS
T ss_pred ceEEEecC--------------------------------CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc
Confidence 11111000 0123456677888888777766655 67777765554
Q ss_pred eeeeecCcccceeEEEEEeCCCCCEEEEec---CCCcEEEEeeeCCCc--eEEEEeeeeccceEEEEEcCCCcEEEEeC-
Q psy17863 242 LLEEYKGHKSGDFRIECCLDSKDSQIFCGS---SDGKIYKWQLVDSSQ--ISTLIHSVGKAVVNSLCSHPTRKHIMSAC- 315 (341)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 315 (341)
. ..+..+....... .+ ++|.+++... .++.|.+||+.+++. ...+........+..++|+ ++.++++..
T Consensus 264 ~-~~l~~~~~~~~~~--~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~ 338 (695)
T 2bkl_A 264 F-RLLVKGVGAKYEV--HA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLK 338 (695)
T ss_dssp C-EEEEECSSCCEEE--EE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEE
T ss_pred e-EEeecCCCceEEE--Ee-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEE
Confidence 3 4444444444433 33 5666444443 358899999887764 3444421224568889998 677888888
Q ss_pred CCcEEEEEcc
Q psy17863 316 GNNVKLWTAE 325 (341)
Q Consensus 316 d~~i~vw~~~ 325 (341)
|+..++|.++
T Consensus 339 dg~~~l~~~~ 348 (695)
T 2bkl_A 339 DATSEVRVAT 348 (695)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 9988888765
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.8e-13 Score=109.38 Aligned_cols=235 Identities=10% Similarity=0.027 Sum_probs=158.2
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEe----------CCCeEEEEcCCCcceeeEecCc-------ccceeEEEEecC
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCG----------SDKKIKLWNPYRNLLLKTYGGH-------AHEVNDATAACD 66 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~-------~~~v~~~~~~~~ 66 (341)
+.+.++..-..+ .++++|||++++++. .++.|.+||..+.+.+.++... ...-..+.|+||
T Consensus 58 ~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spD 135 (373)
T 2mad_H 58 SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPN 135 (373)
T ss_pred eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCC
Confidence 344455543344 999999999999886 3678999999988887776432 123457899999
Q ss_pred CCEEEEecC--CCcEEEEECCCCceeee-ecccCccEEEEEEcCCC-cEEEEecCCCeEEEEEecCCCCcCeEE------
Q psy17863 67 SSQIASGAS--DKSVILWEVTTGQPVRR-WREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKSRSHHPIQC------ 136 (341)
Q Consensus 67 ~~~l~~~~~--dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~------ 136 (341)
|++|+++.. ++.|.++| .+++.+.. +... . ++.+.|++ ..+++.+.||.+.++|. +++......
T Consensus 136 G~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~ 209 (373)
T 2mad_H 136 NADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLT 209 (373)
T ss_pred CCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEecccccc
Confidence 999998874 57899999 99988877 6532 2 23444543 45666778899999988 554221100
Q ss_pred ---------eecCCCceEEEeeccCeEEEEEccCCcce--eeeEeee--------cCceEEEEEECCCCceEEEeC----
Q psy17863 137 ---------CLDSKDSQIFCGSSDGKIYKWQLVDSSQI--STLIHSV--------GKAVVNSLCSHPTRKHIMSAC---- 193 (341)
Q Consensus 137 ---------~~~~~~~~~~~~~~~g~i~~~d~~~~~~~--~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~---- 193 (341)
.....++.++..+..+.+.+.|+...... ..+.... .......+.++|+++.+.+..
T Consensus 210 ~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~ 289 (373)
T 2mad_H 210 AAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS 289 (373)
T ss_pred CCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCC
Confidence 01112334444446788999998654321 1111100 112234478899988877753
Q ss_pred -------CCceEEEEccccc------CCCCeEEEEEccCCC-EEEEee-cCCeEEEEeccccceeeee
Q psy17863 194 -------GNNVKLWTAEEDY------GQEPIVDACFTRDCQ-CILTCS-TDECLRLFDKATGELLEEY 246 (341)
Q Consensus 194 -------~~~i~~~~~~~~~------~~~~i~~~~~~~~~~-~l~~~~-~d~~i~i~d~~~~~~~~~~ 246 (341)
++.|.++|..+.. .......++|+|||+ +++++. .++.|.++|..+++.+..+
T Consensus 290 ~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 290 AWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred cccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 2468889987654 344578999999999 777777 5899999999999988774
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-12 Score=104.16 Aligned_cols=233 Identities=12% Similarity=0.104 Sum_probs=163.4
Q ss_pred cCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeee-ecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC
Q psy17863 52 GGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR-WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 130 (341)
Q Consensus 52 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 130 (341)
..+...+.++++.++++.+++...++.|.+||.. ++.... ...+...+..+++.+++.+.++...++.|..||... +
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~ 88 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-I 88 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-C
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-c
Confidence 3445678999999999987777668899999987 554322 223456789999999998888777678888887541 1
Q ss_pred CcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc---
Q psy17863 131 HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY--- 206 (341)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~--- 206 (341)
+..+... .....+..+++.+++.++++.. ++.+..|+.....
T Consensus 89 -----------------------~~~~~~~-----------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~ 134 (299)
T 2z2n_A 89 -----------------------IKEYTLP-----------NPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREY 134 (299)
T ss_dssp -----------------------EEEEECS-----------STTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEE
T ss_pred -----------------------EEEEeCC-----------CcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEe
Confidence 1111110 0123467888888888777765 4678888763211
Q ss_pred ----CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeee-ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEee
Q psy17863 207 ----GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEE-YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 281 (341)
Q Consensus 207 ----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (341)
....+..++++++|+++++...++.|..||. +++.... +......+..+ ++++++++.++...++.|.+|+.
T Consensus 135 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i--~~~~~g~l~v~~~~~~~i~~~~~ 211 (299)
T 2z2n_A 135 ELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGI--TKGNDDALWFVEIIGNKIGRITT 211 (299)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE--EECTTSSEEEEETTTTEEEEECT
T ss_pred cCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeE--EECCCCCEEEEccCCceEEEECC
Confidence 2356789999999988877777789999998 6655432 22233334444 88999987777777889999998
Q ss_pred eCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 282 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 282 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
+++.. .+....+...+.+++++++|+++++.. ++.|..|+..
T Consensus 212 -~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 212 -SGEIT-EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp -TCCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred -CCcEE-EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 66543 333213446789999999999888776 8899999974
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-14 Score=116.22 Aligned_cols=265 Identities=10% Similarity=-0.013 Sum_probs=152.7
Q ss_pred CcEEEEEEccCCCEEEEEeC--CCeEEEEcCCCcceeeEe-------cCcccceeEEEEecCCCEEEEecC-----CCcE
Q psy17863 14 GAIRAVRFNVDGSYCLTCGS--DKKIKLWNPYRNLLLKTY-------GGHAHEVNDATAACDSSQIASGAS-----DKSV 79 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~--dg~i~iw~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i 79 (341)
..+..++++|+|+++++... ++.++||.+.+++. ..+ ..+...+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 78999999999999888642 34355555544443 222 134567899999999876665433 5789
Q ss_pred EEEECCCCceeeeeccc------CccEEEEEEcCCCcEE-EEec---CCCeEEEEEecCCCCcCeEEeecCCCceEEEee
Q psy17863 80 ILWEVTTGQPVRRWREH------ASKVTCVKFNEDSSVV-ISGS---QDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGS 149 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l-~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 149 (341)
.+||+.+++.+..+... ...+..+++++++..+ ++-. .++.|.+||+.+++. ......+..
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~--~r~~~~~~~------- 166 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA--ARVLQGYPG------- 166 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE--EEECTTCTT-------
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE--EEEecCCCc-------
Confidence 99999999876665432 2346789998754444 4444 567888888765441 110000000
Q ss_pred ccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEe-CCCceEEEEcccccCCCCeEEEEEccCCCEEEEeec
Q psy17863 150 SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA-CGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCST 228 (341)
Q Consensus 150 ~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 228 (341)
. .... ..+.+++..+... .++.+..|. ..+..++++|+++.|+.+..
T Consensus 167 --------------~--------~~~~---~~~~~~g~~~~~~~~~g~~~~~~-------~~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 167 --------------I--------APED---IDLVIDGVPVQIGQPDGTVIRPH-------LGVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp --------------T--------SCCS---CCCEETTEECBEECTTSCEECCC-------CCEEEEEECTTSCEEEEEES
T ss_pred --------------c--------cccc---cceeECCEEEEeccCCCceecee-------cccceeEeccCCCEEEEEeC
Confidence 0 0000 0011112111111 112222221 23566888888887777766
Q ss_pred CC-eEEEEeccc---c-----ceee--eecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeecc
Q psy17863 229 DE-CLRLFDKAT---G-----ELLE--EYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA 297 (341)
Q Consensus 229 d~-~i~i~d~~~---~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 297 (341)
.+ .+..++... + +... ...++......+ +++++|+++++...++.|.+||..+++. ..+.......
T Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi--a~d~~G~l~va~~~~~~V~~~d~~~G~~-~~~~~~~~~~ 291 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI--SIDKDHNIYVGDLAHSAIGVITSADRAY-KLLVTDEKLS 291 (343)
T ss_dssp SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE--EECTTCCEEEEEGGGTEEEEEETTTTEE-EEEEECGGGS
T ss_pred CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE--EECCCCCEEEEccCCCeEEEEECCCCCE-EEEEECCcee
Confidence 55 454444321 0 1011 111222222334 7899999999998999999999756653 3333112245
Q ss_pred ceEEEEEcCCCcEEEEeC-CCcEEEEE
Q psy17863 298 VVNSLCSHPTRKHIMSAC-GNNVKLWT 323 (341)
Q Consensus 298 ~v~~~~~~~~~~~l~~~~-d~~i~vw~ 323 (341)
.+.+++|.++++++++.+ .+.+.+|.
T Consensus 292 ~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 292 WTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp CEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred cCCeeEECCCCcEEEEeCccccccccc
Confidence 689999999999888877 54544433
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-12 Score=105.19 Aligned_cols=240 Identities=11% Similarity=0.136 Sum_probs=145.0
Q ss_pred EEeeeCCcEEEEEEccCC-CEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC
Q psy17863 8 TIDCKQGAIRAVRFNVDG-SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 86 (341)
.+..+..---+..|+|++ .++++...++.|..||..+++. ..+. ....+.+++++++++++++ . ++.|.+||.++
T Consensus 7 ~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~ 82 (297)
T 3g4e_A 7 VLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE 82 (297)
T ss_dssp EECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT
T ss_pred EeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCC
Confidence 344455566789999964 4566666789999999887654 3333 4567899999999995554 3 46799999987
Q ss_pred Cceeeeecc----cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 87 GQPVRRWRE----HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 87 ~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
++....... ....+..++++|+|++.++...+... .. ... ...+.|..++..
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~-----~~--------~~~---------~~~~~l~~~d~~-- 138 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETA-----PA--------VLE---------RHQGALYSLFPD-- 138 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSB-----TT--------BCC---------TTCEEEEEECTT--
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccc-----cc--------ccc---------CCCcEEEEEECC--
Confidence 765332221 22457889999999866644222110 00 000 001122222211
Q ss_pred cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEE-EeecCCeEEEEec--cc
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCIL-TCSTDECLRLFDK--AT 239 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~--~~ 239 (341)
.....+.. .. .....++|+|+++.++ +.+.++.|.+|++ .+
T Consensus 139 g~~~~~~~--~~----------------------------------~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~ 182 (297)
T 3g4e_A 139 HHVKKYFD--QV----------------------------------DISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQT 182 (297)
T ss_dssp SCEEEEEE--EE----------------------------------SBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTT
T ss_pred CCEEEEee--cc----------------------------------ccccceEEcCCCCEEEEecCCCCcEEEEeccCCC
Confidence 11111110 01 1123456666665443 4445667777775 34
Q ss_pred cce-----eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEc-CCCcEEEE
Q psy17863 240 GEL-----LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH-PTRKHIMS 313 (341)
Q Consensus 240 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~ 313 (341)
+.. ...+..+......+ +++++|++.++....+.|..||..+++.+..+. .+...+++++|. |+++.|..
T Consensus 183 G~~~~~~~~~~~~~~~~~p~g~--~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~--~p~~~~t~~~f~g~d~~~L~v 258 (297)
T 3g4e_A 183 GQISNRRSVYKLEKEEQIPDGM--CIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK--LPVDKTTSCCFGGKNYSEMYV 258 (297)
T ss_dssp CCEEEEEEEEECCGGGCEEEEE--EEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE--CSSSBEEEEEEESGGGCEEEE
T ss_pred CcccCcEEEEECCCCCCCCCee--EECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE--CCCCCceEEEEeCCCCCEEEE
Confidence 432 22222222334444 789999888877778899999988899888887 555679999998 88876655
Q ss_pred eC
Q psy17863 314 AC 315 (341)
Q Consensus 314 ~~ 315 (341)
++
T Consensus 259 t~ 260 (297)
T 3g4e_A 259 TC 260 (297)
T ss_dssp EE
T ss_pred Ec
Confidence 44
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=8.3e-15 Score=119.49 Aligned_cols=257 Identities=9% Similarity=-0.005 Sum_probs=173.3
Q ss_pred eEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEec----------CCCcEEEEECCCCceeeeeccc-------Cc
Q psy17863 36 KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA----------SDKSVILWEVTTGQPVRRWREH-------AS 98 (341)
Q Consensus 36 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~-------~~ 98 (341)
.|.+.|..+++.+.++.....+ .+.++||+++++++. .++.|.+||..+++.+.++... ..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 8889999999999999766566 799999999998886 3688999999999999888643 12
Q ss_pred cEEEEEEcCCCcEEEEecC--CCeEEE--EEecCCCCcCeEE-----eecCCCceEEEeeccCeEEEEEccC-----Ccc
Q psy17863 99 KVTCVKFNEDSSVVISGSQ--DNTVMM--WDVKSRSHHPIQC-----CLDSKDSQIFCGSSDGKIYKWQLVD-----SSQ 164 (341)
Q Consensus 99 ~v~~~~~~~~~~~l~~~~~--d~~i~i--wd~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~i~~~d~~~-----~~~ 164 (341)
....++++|||++++.+.. +..+.+ +|+.+ ...+.. ........+++.+.||.+.+.++.+ ++.
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v 202 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV 202 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEEC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeE
Confidence 3467999999999998864 467888 88876 111100 1111222455667788888888876 322
Q ss_pred eeee--EeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc-------------------CCCCeEEEEEccCCCEE
Q psy17863 165 ISTL--IHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY-------------------GQEPIVDACFTRDCQCI 223 (341)
Q Consensus 165 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------~~~~i~~~~~~~~~~~l 223 (341)
.... ....+..+. .....+.++++.. +.+.+.|..... .......++++|+++.+
T Consensus 203 ~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~l 278 (368)
T 1mda_H 203 GAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI 278 (368)
T ss_dssp CCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEE
T ss_pred EEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEE
Confidence 2100 011122222 3444445555555 888888875321 00112227899999988
Q ss_pred EEeec-C--------CeEEEEeccccceeeeecCcccceeEEEEEeCCCCCE-EEEec-CCCcEEEEeeeCCCceEEEEe
Q psy17863 224 LTCST-D--------ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGS-SDGKIYKWQLVDSSQISTLIH 292 (341)
Q Consensus 224 ~~~~~-d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~-~dg~i~iwd~~~~~~~~~~~~ 292 (341)
+++.. . +.+.++|+.+++.+..+.... ....+ ++++++++ +++.. .++.|.++|+.+++.+.++.
T Consensus 279 yV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi--~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~- 354 (368)
T 1mda_H 279 MILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAI--IAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE- 354 (368)
T ss_dssp EEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEE--EECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC-
T ss_pred EEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceE--EECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE-
Confidence 87643 2 356699999999988887544 33445 89999984 55666 59999999999999998887
Q ss_pred eeeccceEEEEEcC
Q psy17863 293 SVGKAVVNSLCSHP 306 (341)
Q Consensus 293 ~~~~~~v~~~~~~~ 306 (341)
.. .....+++.+
T Consensus 355 -vg-~~P~~i~~~~ 366 (368)
T 1mda_H 355 -LD-KGPESLSVQN 366 (368)
T ss_dssp -CC-SCCCEEECCC
T ss_pred -CC-CCCCEEEeec
Confidence 22 3344555543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.7e-12 Score=101.88 Aligned_cols=227 Identities=12% Similarity=0.096 Sum_probs=137.0
Q ss_pred CcEEEEEEccCCC-EEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeee
Q psy17863 14 GAIRAVRFNVDGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 92 (341)
Q Consensus 14 ~~v~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 92 (341)
.-..+.+|+|++. ++++...++.|..||..+++.. .+. ....+.+++|+++++++++. .++ |.+||..+++....
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~g-l~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DDG-LFLRDTATGVLTLH 124 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TTE-EEEEETTTCCEEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CCC-EEEEECCCCcEEEE
Confidence 3456889999754 5566667889999998876543 333 34679999999999877764 444 99999988775332
Q ss_pred ecc----cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeee
Q psy17863 93 WRE----HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 168 (341)
Q Consensus 93 ~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 168 (341)
... ....+.+++++|+|+++++...+.. . ...+.|..++ +++ ...+
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~------~---------------------~~~~~l~~~~--~g~-~~~~ 174 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKA------E---------------------TGAGSIYHVA--KGK-VTKL 174 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTC------C---------------------TTCEEEEEEE--TTE-EEEE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcC------C---------------------CCceEEEEEe--CCc-EEEe
Confidence 211 1246889999999986654432100 0 0011222222 111 1111
Q ss_pred EeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEe-ecCCeEEEEecc--cc-ce--
Q psy17863 169 IHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTC-STDECLRLFDKA--TG-EL-- 242 (341)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~--~~-~~-- 242 (341)
.. .. .....++|+|+++.++.+ +.++.|.+|++. ++ +.
T Consensus 175 ~~--~~----------------------------------~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~ 218 (326)
T 2ghs_A 175 FA--DI----------------------------------SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK 218 (326)
T ss_dssp EE--EE----------------------------------SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC
T ss_pred eC--CC----------------------------------cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccC
Confidence 10 00 112345566666554433 345678888764 44 21
Q ss_pred ---eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEc-CCCcEEEEeC
Q psy17863 243 ---LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH-PTRKHIMSAC 315 (341)
Q Consensus 243 ---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 315 (341)
...+.........+ +++++|++.++...++.|..|+. +++.+..+. .+...+++++|+ |+++.|..++
T Consensus 219 ~~~~~~~~~~~~~p~gi--~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~--~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 219 AEVFIDSTGIKGGMDGS--VCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE--VPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp CEEEEECTTSSSEEEEE--EECTTSCEEEEEETTTEEEEECT-TCCEEEEEE--CSCSBEEEEEEESTTSCEEEEEE
T ss_pred ceEEEECCCCCCCCCee--EECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE--CCCCCcEEEEEecCCCCEEEEEe
Confidence 11222222233334 78899987777766788999997 677777766 455679999998 8887665554
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-12 Score=103.92 Aligned_cols=249 Identities=9% Similarity=0.054 Sum_probs=144.3
Q ss_pred eeEEeeeCCcEEEEEEccCCC-EEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEEC
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGS-YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV 84 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~ 84 (341)
+..+..+........|+|+|+ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 445555666778999999998 5667777899999997 444 4455556677899999999997776666688999997
Q ss_pred CCCceeeeeccc----CccEEEEEEcCCCcEEEE----ecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEE
Q psy17863 85 TTGQPVRRWREH----ASKVTCVKFNEDSSVVIS----GSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYK 156 (341)
Q Consensus 85 ~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 156 (341)
+ ++........ ...+..+++.++|++.++ +..+. .+.... ......+.|..
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~------~~~~~~--------------~~~~~~~~v~~ 173 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKP------SQGCPA--------------DPELAHHSVYR 173 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCG------GGSCCC--------------CCSSSCEEEEE
T ss_pred C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccc------cccccc--------------ccccCCCeEEE
Confidence 5 5532221111 123567888888887765 22110 000000 00001123444
Q ss_pred EEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecC------C
Q psy17863 157 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTD------E 230 (341)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~ 230 (341)
+|..+++..... . .. ....++|+|+++.|+.+... +
T Consensus 174 ~d~~~g~~~~~~--~--~~----------------------------------~p~gl~~spdg~~lyv~~~~~~~~~~~ 215 (305)
T 3dr2_A 174 LPPDGSPLQRMA--D--LD----------------------------------HPNGLAFSPDEQTLYVSQTPEQGHGSV 215 (305)
T ss_dssp ECSSSCCCEEEE--E--ES----------------------------------SEEEEEECTTSSEEEEEECCC---CCC
T ss_pred EcCCCCcEEEEe--c--CC----------------------------------CCcceEEcCCCCEEEEEecCCcCCCCC
Confidence 444333221111 1 01 12345556666555554443 5
Q ss_pred eEEEEeccccce--eeee-cCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCC
Q psy17863 231 CLRLFDKATGEL--LEEY-KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 231 ~i~i~d~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
.|++|++..+.. ...+ .........+ +++++|++.+ +..+| |.+|+. +++.+..+. ... .+..++|+|+
T Consensus 216 ~i~~~~~~~~~l~~~~~~~~~~~~~pdgi--~~d~~G~lwv-~~~~g-v~~~~~-~g~~~~~~~--~~~-~~~~~~f~~d 287 (305)
T 3dr2_A 216 EITAFAWRDGALHDRRHFASVPDGLPDGF--CVDRGGWLWS-SSGTG-VCVFDS-DGQLLGHIP--TPG-TASNCTFDQA 287 (305)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSCCCSE--EECTTSCEEE-CCSSE-EEEECT-TSCEEEEEE--CSS-CCCEEEECTT
T ss_pred EEEEEEecCCCccCCeEEEECCCCCCCeE--EECCCCCEEE-ecCCc-EEEECC-CCCEEEEEE--CCC-ceeEEEEeCC
Confidence 677777654321 0111 1111122234 7889998444 44454 999996 677777776 333 5889999999
Q ss_pred CcEEEEeCCCcEEEEE
Q psy17863 308 RKHIMSACGNNVKLWT 323 (341)
Q Consensus 308 ~~~l~~~~d~~i~vw~ 323 (341)
++.|..++.+.+..++
T Consensus 288 ~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 288 QQRLFITGGPCLWMLP 303 (305)
T ss_dssp SCEEEEEETTEEEEEE
T ss_pred CCEEEEEcCCeEEEEE
Confidence 9888877744444433
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-14 Score=115.29 Aligned_cols=171 Identities=11% Similarity=0.066 Sum_probs=124.8
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc-----------eeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL-----------LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
+++.+++++...++++|+.++ +++|++.+.. ..... .+.. |+.++| |+++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999875 6669865433 11223 3556 999999 88999998 889999999
Q ss_pred CCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCc
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSS 163 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~ 163 (341)
+.+.........|...+.++.+.+.. +++++.||.+.+||+.++.
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~--------------------------------- 157 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKS--------------------------------- 157 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCC---------------------------------
T ss_pred chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCc---------------------------------
Confidence 98877666666777778877776542 7777777887777776543
Q ss_pred ceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccce-
Q psy17863 164 QISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL- 242 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~- 242 (341)
... . ...+++++|+|+| ++.|..||.+++|+...++.
T Consensus 158 ~~~-~---------------------------------------~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~ 195 (388)
T 1xip_A 158 TKQ-L---------------------------------------AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEME 195 (388)
T ss_dssp EEE-E---------------------------------------EESEEEEEECSSE--EEEEETTSCEEEEEEETTEEE
T ss_pred ccc-c---------------------------------------cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCcccc
Confidence 100 0 1246778888888 67788999999998876664
Q ss_pred -eeee------c---CcccceeEEEEEeCCCCCEEEEe
Q psy17863 243 -LEEY------K---GHKSGDFRIECCLDSKDSQIFCG 270 (341)
Q Consensus 243 -~~~~------~---~~~~~~~~~~~~~~~~~~~l~~~ 270 (341)
.+++ . +|...+..+ .|.+++.++++-
T Consensus 196 ~k~~I~~Pp~~~~~~~~~~~V~sI--~wl~~~~flv~y 231 (388)
T 1xip_A 196 KQFEFSLPSELEELPVEEYSPLSV--TILSPQDFLAVF 231 (388)
T ss_dssp EEEEECCCHHHHTSCTTTSEEEEE--EESSSSEEEEEE
T ss_pred ccceecCCcccccccCCCeeEEEE--EEecCCeEEEEE
Confidence 4555 2 355556666 888999888863
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.59 E-value=5.2e-13 Score=105.48 Aligned_cols=200 Identities=7% Similarity=0.006 Sum_probs=134.6
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec-CcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeee
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 92 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 92 (341)
..+.+++++++|+++++.. ++.|.+||...... ..+. .....+..+++.++++++++...++.|.+|+..+......
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~ 144 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL 144 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee
Confidence 4678899999999666655 88999999766543 3332 2335688999999999877777788999997655443332
Q ss_pred ecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeee
Q psy17863 93 WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV 172 (341)
Q Consensus 93 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~ 172 (341)
.......+..++++++++++++...++.|.+||...... .... .
T Consensus 145 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~---------------------------------~~~~--~- 188 (270)
T 1rwi_B 145 PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ---------------------------------VVLP--F- 188 (270)
T ss_dssp CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCE---------------------------------EECC--C-
T ss_pred ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCce---------------------------------Eeec--c-
Confidence 222334567899999888777766677788887654320 0000 0
Q ss_pred cCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccc
Q psy17863 173 GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSG 252 (341)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 252 (341)
. ....+..++++++|.++++...++.|.+|+............+...
T Consensus 189 ~---------------------------------~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 235 (270)
T 1rwi_B 189 T---------------------------------DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNT 235 (270)
T ss_dssp S---------------------------------SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSC
T ss_pred c---------------------------------CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCC
Confidence 0 0123456777777766666666788999998654332222222233
Q ss_pred eeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc
Q psy17863 253 DFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 286 (341)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (341)
+..+ +++++|+++++...++.|+++++...+.
T Consensus 236 p~~i--~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 236 PLAV--AVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEEE--EECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred ceeE--EECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 4555 8899999888888999999999876544
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-13 Score=121.00 Aligned_cols=239 Identities=12% Similarity=0.123 Sum_probs=147.2
Q ss_pred eCCcEEEEEEccCCCEEEEE-----eCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCc--------
Q psy17863 12 KQGAIRAVRFNVDGSYCLTC-----GSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKS-------- 78 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~-----~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------- 78 (341)
|...+..++|||||++||-+ +....|++||+.+++.+... .+......++|+ |++.|+.++.+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccccc
Confidence 55578899999999999843 33357999999998865431 111123678999 9999998877743
Q ss_pred -----EEEEECCCCce----eeeecc-cCccEEEEEEcCCCcEEEEecCC----CeEEEEEecCCCCcCeEEeecCCCce
Q psy17863 79 -----VILWEVTTGQP----VRRWRE-HASKVTCVKFNEDSSVVISGSQD----NTVMMWDVKSRSHHPIQCCLDSKDSQ 144 (341)
Q Consensus 79 -----i~iw~~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~ 144 (341)
|++|++.++.. +..... |......+.|+||+++|+..... ..|.++|+.++..
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~------------- 271 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA------------- 271 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC-------------
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC-------------
Confidence 99999987643 333333 44557889999999988654322 3555555543320
Q ss_pred EEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEE
Q psy17863 145 IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCIL 224 (341)
Q Consensus 145 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~ 224 (341)
....+... ....... ++++|..|+
T Consensus 272 -------------------~~~~l~~~------------------------------------~~~~~~~-~~~~g~~l~ 295 (693)
T 3iuj_A 272 -------------------PLLTVQGD------------------------------------LDADVSL-VDNKGSTLY 295 (693)
T ss_dssp -------------------CCEEEECS------------------------------------SSSCEEE-EEEETTEEE
T ss_pred -------------------ceEEEeCC------------------------------------CCceEEE-EeccCCEEE
Confidence 11111110 0011111 333333333
Q ss_pred -Eeec---CCeEEEEeccccce--eeeecCcccceeEEEEEeCCCCCEEEEecC-CC--cEEEEeeeCCCceEEEEeeee
Q psy17863 225 -TCST---DECLRLFDKATGEL--LEEYKGHKSGDFRIECCLDSKDSQIFCGSS-DG--KIYKWQLVDSSQISTLIHSVG 295 (341)
Q Consensus 225 -~~~~---d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~ 295 (341)
.... .+.|..+|+.++.. ...+..|...+. .++++++.|+.... ++ .|++|++. +.....+.. ..
T Consensus 296 ~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~----~~s~~g~~lv~~~~~~g~~~l~~~d~~-g~~~~~l~~-p~ 369 (693)
T 3iuj_A 296 LLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL----TVHSGSGYLFAEYMVDATARVEQFDYE-GKRVREVAL-PG 369 (693)
T ss_dssp EEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE----EEEEETTEEEEEEEETTEEEEEEECTT-SCEEEEECC-SS
T ss_pred EEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE----EEEEECCEEEEEEEECCeeEEEEEECC-CCeeEEeec-CC
Confidence 3322 35788899887654 345555655443 56777887776654 43 68889876 444444431 23
Q ss_pred ccceEEEEEcCCCcEEEEeC-C----CcEEEEEcccc
Q psy17863 296 KAVVNSLCSHPTRKHIMSAC-G----NNVKLWTAEED 327 (341)
Q Consensus 296 ~~~v~~~~~~~~~~~l~~~~-d----~~i~vw~~~~~ 327 (341)
...+..+.+++++..|+... + +.+..|++.++
T Consensus 370 ~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 370 LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 45677888888887666554 4 78999988654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-13 Score=111.74 Aligned_cols=289 Identities=14% Similarity=0.141 Sum_probs=183.9
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccC
Q psy17863 18 AVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHA 97 (341)
Q Consensus 18 ~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 97 (341)
++....++. +..++.++.|..|| .+++....+......+.++...+++. |..++.+ +..+|. +++.+..+....
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~ 97 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKK 97 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC--
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCC
Confidence 344545554 66667788899999 88887766665555567777766664 5555555 888885 666655554333
Q ss_pred ccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------cCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeE
Q psy17863 98 SKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 169 (341)
Q Consensus 98 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 169 (341)
.......+. +..+..++.++.+..+|.. ++. .........+++.+..++.++.+..+|.. ++......
T Consensus 98 ~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~ 173 (330)
T 3hxj_A 98 AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFK 173 (330)
T ss_dssp ---CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEE
T ss_pred CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEe
Confidence 322333333 4467778888889988876 331 11122233346678888889999999988 66554443
Q ss_pred eeecCceEEEEEECCCCceEEEeCCCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEEEEecccccee
Q psy17863 170 HSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELL 243 (341)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 243 (341)
. ....+.++...+++...+.. +.+..++..... ....+.++...++|. +.+++.++.+..+|. +++.+
T Consensus 174 ~--~~~~~~~~~~d~~g~l~v~t--~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~ 247 (330)
T 3hxj_A 174 T--NDAITSAASIGKDGTIYFGS--DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEK 247 (330)
T ss_dssp C--SSCCCSCCEECTTCCEEEES--SSEEEECTTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEE
T ss_pred c--CCCceeeeEEcCCCEEEEEe--CEEEEECCCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEe
Confidence 2 23345667777777766655 788888832211 234577778888876 556667788888884 56665
Q ss_pred eeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEE
Q psy17863 244 EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWT 323 (341)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~ 323 (341)
..+.........+ ...+++ .|..++.+|.|..+|. +++.+..+. .....+.++...+++++.+.+.+|.+++..
T Consensus 248 ~~~~~~~~~~~~~--~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~--~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~ 321 (330)
T 3hxj_A 248 WRFKTGKRIESSP--VIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFE--TGSWIIATPVIDENGTIYFGTRNGKFYALF 321 (330)
T ss_dssp EEEECSSCCCSCC--EECTTS-CEEEECTTCEEEEECT-TSCEEEEEE--CSSCCCSCCEECTTCCEEEECTTSCEEEEE
T ss_pred EEeeCCCCccccc--eEcCCC-eEEEecCCCCEEEECC-CCcEEEEEE--cCCccccceEEcCCCEEEEEcCCCeEEEEe
Confidence 5555433323333 445455 6777888889999995 777776665 445667788888888866655499999887
Q ss_pred ccccc
Q psy17863 324 AEEDY 328 (341)
Q Consensus 324 ~~~~~ 328 (341)
.+...
T Consensus 322 ~~~~~ 326 (330)
T 3hxj_A 322 NLEHH 326 (330)
T ss_dssp C----
T ss_pred ccccc
Confidence 76544
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.2e-13 Score=120.62 Aligned_cols=246 Identities=11% Similarity=0.097 Sum_probs=145.0
Q ss_pred ccCCCEEEEEeCCCe---EEEEc--CC---CcceeeEe------cCcccceeEEEEecCCCEEEEecCC-----CcEEEE
Q psy17863 22 NVDGSYCLTCGSDKK---IKLWN--PY---RNLLLKTY------GGHAHEVNDATAACDSSQIASGASD-----KSVILW 82 (341)
Q Consensus 22 ~~~~~~l~t~~~dg~---i~iw~--~~---~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw 82 (341)
+|+|++++....++. -.+|- .. .++....+ .+|...+..++|+|||++|+.+..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 489998886654432 44554 33 33322221 2233478899999999999876543 469999
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
|+.+++.+.. ..+...+..++|+|| +.|+.++.++... .+ .+........|++|++.+.
T Consensus 195 dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~-----~~--------------~~~~~~~~~~v~~~~lgt~ 253 (741)
T 1yr2_A 195 GVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKE-----GQ--------------AFQALNYNQTVWLHRLGTP 253 (741)
T ss_dssp ETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC---------------------------CCCCCEEEEEETTSC
T ss_pred ECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccc-----cc--------------ccccCCCCCEEEEEECCCC
Confidence 9999987543 112222357899999 8888887665310 00 0000111345666666544
Q ss_pred cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecC-----CeEEEEec
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTD-----ECLRLFDK 237 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~i~d~ 237 (341)
.....+..... .+...+..+.|+|||++|+..+.+ ..|++||+
T Consensus 254 ~~~~~lv~~~~--------------------------------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~ 301 (741)
T 1yr2_A 254 QSADQPVFATP--------------------------------ELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARV 301 (741)
T ss_dssp GGGCEEEECCT--------------------------------TCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEE
T ss_pred chhCEEEeccC--------------------------------CCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEEC
Confidence 32111111100 011235667788888877766654 37999999
Q ss_pred ccc--ceeeeecCcccceeEEEEEeCCCCCEEEEecC----CCcEEEEeeeCCC-ceEEEEeeeeccceEEEEEcCCCcE
Q psy17863 238 ATG--ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS----DGKIYKWQLVDSS-QISTLIHSVGKAVVNSLCSHPTRKH 310 (341)
Q Consensus 238 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~ 310 (341)
.++ +....+..+....... ++++|+.|+..+. ++.|.+||+.++. ....+.. .+...+..+.|+ ++.+
T Consensus 302 ~~~~~~~~~~l~~~~~~~~~~---~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-~~~~~l~~~~~~-~~~l 376 (741)
T 1yr2_A 302 TNGKIGPVTALIPDLKAQWDF---VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-ESKDNLESVGIA-GNRL 376 (741)
T ss_dssp ETTEECCCEEEECSSSSCEEE---EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-CCSSEEEEEEEE-BTEE
T ss_pred CCCCCcccEEecCCCCceEEE---EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-CCCCeEEEEEEE-CCEE
Confidence 876 3145555554444333 3478888877665 4559999987752 3344432 445567788887 5667
Q ss_pred EEEeC-CCcEEEEEcc
Q psy17863 311 IMSAC-GNNVKLWTAE 325 (341)
Q Consensus 311 l~~~~-d~~i~vw~~~ 325 (341)
+++.. |+..+||.++
T Consensus 377 v~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 377 FASYIHDAKSQVLAFD 392 (741)
T ss_dssp EEEEEETTEEEEEEEE
T ss_pred EEEEEECCEEEEEEEe
Confidence 77777 8888777665
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-12 Score=107.04 Aligned_cols=258 Identities=9% Similarity=0.003 Sum_probs=171.6
Q ss_pred cCCCEEEEecCC-----CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEec----------CCCeEEEEEecCC
Q psy17863 65 CDSSQIASGASD-----KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS----------QDNTVMMWDVKSR 129 (341)
Q Consensus 65 ~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~iwd~~~~ 129 (341)
++++.+++.... +.|.++|..+++.+.++..-..+ .++++||+++++.+. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 467766666542 68999999999999988765555 899999999888876 3678999999886
Q ss_pred CCcC----------------eEEeecCCCceEEEeec--cCeEEEEEccCCcceeeeEeeecC-----ceEEEEEECCCC
Q psy17863 130 SHHP----------------IQCCLDSKDSQIFCGSS--DGKIYKWQLVDSSQISTLIHSVGK-----AVVNSLCSHPTR 186 (341)
Q Consensus 130 ~~~~----------------~~~~~~~~~~~~~~~~~--~g~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 186 (341)
+... ......+++.+++++.. ++.|.+.|+.+.+.+..+...... ..-.-+.+++++
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG 239 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDG 239 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCC
Confidence 5321 12233445557777653 578999999999887776542110 001124555666
Q ss_pred ceEEEeCC-CceEE-----EEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccce--eeeecC----------
Q psy17863 187 KHIMSACG-NNVKL-----WTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL--LEEYKG---------- 248 (341)
Q Consensus 187 ~~~~~~~~-~~i~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~---------- 248 (341)
+.++.... +.+.. ++... ......+.+.+++..++..+..+.+.+.|...... +..+..
T Consensus 240 ~~~~V~~~~~~v~~~~~~~~~v~~---~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~ 316 (426)
T 3c75_H 240 SLARVDFADGETKVTNTEVFHTED---ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDW 316 (426)
T ss_dssp SEEEEECCTTCCEEEECCCCSCTT---SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTE
T ss_pred CEEEEECCCCcEEEEeeeeeccCC---CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccc
Confidence 66555442 22221 11111 11112356788888877777889999999865432 111110
Q ss_pred cccceeEEEEEeCCCCCEEEEecC----------CCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCc-EEEEeC--
Q psy17863 249 HKSGDFRIECCLDSKDSQIFCGSS----------DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK-HIMSAC-- 315 (341)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-- 315 (341)
.......+ +++++++.++.... ++.|.++|..+.+.+.++.. ......+.|+||++ +++++.
T Consensus 317 ~p~g~~~v--a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v---g~~P~gia~spDg~~~lyv~n~~ 391 (426)
T 3c75_H 317 RPGGWQQT--AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL---GHEIDSINVSQDAEPLLYALSAG 391 (426)
T ss_dssp EECSSSCE--EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECCSSSCEEEEEETT
T ss_pred ccCCceee--EEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC---CCCcCeEEEccCCCEEEEEEcCC
Confidence 00111123 78899887776542 35799999999999999873 23588999999998 777776
Q ss_pred CCcEEEEEcccccCCcc
Q psy17863 316 GNNVKLWTAEEDYGQAG 332 (341)
Q Consensus 316 d~~i~vw~~~~~~~~~~ 332 (341)
++.|.++|+.+....+.
T Consensus 392 s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 392 TQTLHIYDAATGEELRS 408 (426)
T ss_dssp TTEEEEEETTTCCEEEE
T ss_pred CCeEEEEECCCCCEEEE
Confidence 89999999988765544
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.2e-11 Score=94.91 Aligned_cols=231 Identities=11% Similarity=0.059 Sum_probs=157.7
Q ss_pred cccceeEEEEecCCCEEEEecCCCcEEEEECCCCceee-eecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCc
Q psy17863 54 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVR-RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH 132 (341)
Q Consensus 54 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 132 (341)
....+.++++.++++..++...++.|.+||.. ++... .+......+..+++.+++++.++...++.|..+|.. ++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~-- 93 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG-- 93 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC--
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC--
Confidence 45678899999999988877778999999987 55433 222234678899999999877777667778888765 22
Q ss_pred CeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-----
Q psy17863 133 PIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY----- 206 (341)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~----- 206 (341)
+..+... .....+..+++.++++++++.. ++.+..++.....
T Consensus 94 ---------------------~~~~~~~-----------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~ 141 (300)
T 2qc5_A 94 ---------------------FTEYPLP-----------QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDL 141 (300)
T ss_dssp ---------------------EEEEECS-----------STTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEEC
T ss_pred ---------------------eEEecCC-----------CCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccC
Confidence 1111110 0113467778888887777665 4667777654211
Q ss_pred --CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeee-ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 207 --GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEE-YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 207 --~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
....+..+++.++++++++...++.|..+|. +++.... ...+...+..+ ++++++++.++....+.|.+|+. +
T Consensus 142 ~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i--~~d~~g~l~v~~~~~~~i~~~~~-~ 217 (300)
T 2qc5_A 142 PNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGI--TSGNDGALWFVEIMGNKIGRITT-T 217 (300)
T ss_dssp SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE--EECTTSSEEEEETTTTEEEEECT-T
T ss_pred CCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceE--EECCCCCEEEEccCCCEEEEEcC-C
Confidence 2356789999999997776666788999998 5554331 12223334445 78899987777777788999997 5
Q ss_pred CCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 284 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 284 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
++... +........+.+++++++|+++++.. ++.|..|+..
T Consensus 218 g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 218 GEISE-YDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp CCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred CcEEE-EECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 54433 22113456788999999999777776 7899999874
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-13 Score=110.64 Aligned_cols=175 Identities=11% Similarity=0.059 Sum_probs=123.5
Q ss_pred ceeEEEEecCCCEEEEecCCCcEEEEECCCCc---------eee-eecccCccEEEEEEcCCCcEEEEecCCCeEEEEEe
Q psy17863 57 EVNDATAACDSSQIASGASDKSVILWEVTTGQ---------PVR-RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126 (341)
Q Consensus 57 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 126 (341)
+++.+++++...++++|+.++ +.+|++++.+ ... ....+.. |+.++| +++.|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 689999999999999999986 6679875433 111 1223566 999999 88888888 7888999988
Q ss_pred cCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc
Q psy17863 127 KSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY 206 (341)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 206 (341)
.+..... .... .
T Consensus 114 ~sl~~~~---------------------------------~~~~--~--------------------------------- 125 (388)
T 1xip_A 114 EELSEFR---------------------------------TVTS--F--------------------------------- 125 (388)
T ss_dssp SSTTCEE---------------------------------EEEE--C---------------------------------
T ss_pred hhhhccC---------------------------------ccce--e---------------------------------
Confidence 7644100 0000 0
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc
Q psy17863 207 GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 286 (341)
Q Consensus 207 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (341)
..++.++.+.+. .+++++.||.|.+||+.++.... +...+.++ +|+|+| ++.|..||++++|+...++.
T Consensus 126 -~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v--~WSpkG--~~vg~~dg~i~~~~~~~~~~ 194 (388)
T 1xip_A 126 -EKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSF--DVTNSQ--LAVLLKDRSFQSFAWRNGEM 194 (388)
T ss_dssp -SSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEE--EECSSE--EEEEETTSCEEEEEEETTEE
T ss_pred -ecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEE--EEcCCc--eEEEEcCCcEEEEcCCCccc
Confidence 111223333322 27888999999999999776643 34567766 999999 67888999999999877664
Q ss_pred --eEEEEe----e---eeccceEEEEEcCCCcEEEEeC
Q psy17863 287 --ISTLIH----S---VGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 287 --~~~~~~----~---~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
...+.. . +|...|.++.|.+++.++++-.
T Consensus 195 ~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 195 EKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 445521 0 2567899999999999998743
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-12 Score=115.24 Aligned_cols=294 Identities=13% Similarity=0.093 Sum_probs=187.5
Q ss_pred CCEEEEEeCCCeEEEEcCCCcceeeEecCcccc-----------eeEEEEecCCCEEEEecCCCcEEEEECCCCceeeee
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE-----------VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 93 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 93 (341)
+..+++++.++.|.-+|..+|+.+.++...... ...+++ ++..+++++.|+.|..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 446777777899999999999998887643211 112333 4668888899999999999999998877
Q ss_pred ccc-C----ccEEE-EEEcCCCcEEEEecC------CCeEEEEEecCCCCcCe---------------------------
Q psy17863 94 REH-A----SKVTC-VKFNEDSSVVISGSQ------DNTVMMWDVKSRSHHPI--------------------------- 134 (341)
Q Consensus 94 ~~~-~----~~v~~-~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~--------------------------- 134 (341)
..+ . ..+.. ... .+..++.++. ++.|..+|.++++..-.
T Consensus 155 ~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred cCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 654 1 11111 111 1334555543 68999999887652100
Q ss_pred --------------EEeecCCCceEEEeeccC-------------------eEEEEEccCCcceeeeEeeecC-------
Q psy17863 135 --------------QCCLDSKDSQIFCGSSDG-------------------KIYKWQLVDSSQISTLIHSVGK------- 174 (341)
Q Consensus 135 --------------~~~~~~~~~~~~~~~~~g-------------------~i~~~d~~~~~~~~~~~~~~~~------- 174 (341)
.....+..+.++.++.++ .|..+|..+++....+....+.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST 312 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence 012233456777776654 5999999999888776643221
Q ss_pred ceEEEEEECCCC---ceEEEeC-CCceEEEEcccccC-------C-----------CCe---------------------
Q psy17863 175 AVVNSLCSHPTR---KHIMSAC-GNNVKLWTAEEDYG-------Q-----------EPI--------------------- 211 (341)
Q Consensus 175 ~~~~~~~~~~~~---~~~~~~~-~~~i~~~~~~~~~~-------~-----------~~i--------------------- 211 (341)
.....+....+| ..++.+. ++.++++|..+... . .++
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~ 392 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA 392 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence 112222222355 3444444 47777777665430 0 011
Q ss_pred ---EEEEEccCCCEEEEeec-------------------------------------------CCeEEEEeccccceeee
Q psy17863 212 ---VDACFTRDCQCILTCST-------------------------------------------DECLRLFDKATGELLEE 245 (341)
Q Consensus 212 ---~~~~~~~~~~~l~~~~~-------------------------------------------d~~i~i~d~~~~~~~~~ 245 (341)
..++++|++.++++... .+.|..||+.+++.+..
T Consensus 393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~ 472 (677)
T 1kb0_A 393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS 472 (677)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence 14688898888877543 27899999999998877
Q ss_pred ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-C--------
Q psy17863 246 YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G-------- 316 (341)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-------- 316 (341)
+... .+.... .+...+..++.++.||.+++||..+++.+..+.. ++.....-+.|.++|+.+++.. .
T Consensus 473 ~~~~-~~~~~g--~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~-~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~ 548 (677)
T 1kb0_A 473 VEHV-SPWNGG--TLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT-GTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLA 548 (677)
T ss_dssp EEES-SSCCCC--EEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC-SSCCCSCCEEEEETTEEEEEEEECCCHHHHHH
T ss_pred cCCC-CCCcCc--ceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC-CCCcccCCEEEEeCCEEEEEEeccCCcccccc
Confidence 7532 222222 3445677888899999999999999999999873 2222334455678887554432 2
Q ss_pred ---------CcEEEEEccc
Q psy17863 317 ---------NNVKLWTAEE 326 (341)
Q Consensus 317 ---------~~i~vw~~~~ 326 (341)
+.+.+|.+..
T Consensus 549 ~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 549 ARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp CCSCSCCCCCEEEEEEETC
T ss_pred ccccccCCCCeEEEEeccc
Confidence 5788888874
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.1e-12 Score=111.62 Aligned_cols=282 Identities=11% Similarity=0.070 Sum_probs=177.5
Q ss_pred CCEEEEEeCCCeEEEEcCCCcceeeEecCcccc----------e-eEEEEecCCCEEEEecCCCcEEEEECCCCceeeee
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE----------V-NDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 93 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 93 (341)
+..+++++.++.|..+|..+|+.+.++...... + ..+.. ++..+++++.|+.|..+|.++|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 556777788899999999999999887643221 0 11222 3567888899999999999999988776
Q ss_pred ccc--CccEEEEEEcC---CCcEEEEec------CCCeEEEEEecCCCCcCe----------------------------
Q psy17863 94 REH--ASKVTCVKFNE---DSSVVISGS------QDNTVMMWDVKSRSHHPI---------------------------- 134 (341)
Q Consensus 94 ~~~--~~~v~~~~~~~---~~~~l~~~~------~d~~i~iwd~~~~~~~~~---------------------------- 134 (341)
... ......+..+| ++. ++.++ .+|.|..||.++++..-.
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 542 11111111122 444 44443 368899999887762110
Q ss_pred ------------EEeecCCCceEEEeeccCe-------------------EEEEEccCCcceeeeEeeecC-------ce
Q psy17863 135 ------------QCCLDSKDSQIFCGSSDGK-------------------IYKWQLVDSSQISTLIHSVGK-------AV 176 (341)
Q Consensus 135 ------------~~~~~~~~~~~~~~~~~g~-------------------i~~~d~~~~~~~~~~~~~~~~-------~~ 176 (341)
.....+..+.++.++.++. |..+|..+++....+....+. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 0122334567778777764 999999999988777643211 11
Q ss_pred EEEEEECCCCc---eEEEeC-CCceEEEEcccccCC--------------------------------------------
Q psy17863 177 VNSLCSHPTRK---HIMSAC-GNNVKLWTAEEDYGQ-------------------------------------------- 208 (341)
Q Consensus 177 ~~~~~~~~~~~---~~~~~~-~~~i~~~~~~~~~~~-------------------------------------------- 208 (341)
........+++ .++.+. ++.++++|..+...-
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~ 386 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW 386 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence 11112222443 444443 477777776543310
Q ss_pred --CCeEEEEEccCCCEEEEeec---------------------------------------------CCeEEEEeccccc
Q psy17863 209 --EPIVDACFTRDCQCILTCST---------------------------------------------DECLRLFDKATGE 241 (341)
Q Consensus 209 --~~i~~~~~~~~~~~l~~~~~---------------------------------------------d~~i~i~d~~~~~ 241 (341)
.....++++|+..++++... +|.|+.||+.+++
T Consensus 387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~ 466 (689)
T 1yiq_A 387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ 466 (689)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred cccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence 00112678888777776532 3789999999999
Q ss_pred eeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEE
Q psy17863 242 LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS 313 (341)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 313 (341)
.+..+..+... ..- .+...+.+++.|+.||.++.||.++|+.+.++.. +......-+.|..+|+..++
T Consensus 467 ~~W~~~~~~~~-~~g--~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~-~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 467 AAWEVPYVTIF-NGG--TLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA-ASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EEEEEEESSSC-CCC--EEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC-SSCCCSCCEEEEETTEEEEE
T ss_pred eEeEccCCCCc-cCc--cceECCCEEEEECCCCcEEEEECCCCccceeeeC-CCCcccCceEEEECCEEEEE
Confidence 88877654322 211 3445677999999999999999999999998873 22222234567788874443
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.5e-15 Score=120.59 Aligned_cols=203 Identities=9% Similarity=0.047 Sum_probs=114.7
Q ss_pred CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCcc-EEE
Q psy17863 24 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASK-VTC 102 (341)
Q Consensus 24 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-v~~ 102 (341)
++..+++++.||.|+.||..+|+.+.+++. +.+.+..+..++..+++++.||.|+.||.++|+.+..++.+... +.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577899999999999999999999988876 55666566667878888899999999999999887665433211 100
Q ss_pred -EEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEE
Q psy17863 103 -VKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLC 181 (341)
Q Consensus 103 -~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 181 (341)
..+. ++..+++++.++.+..||. .+++....+....
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~---------------------------------~tG~~~w~~~~~~--------- 122 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDL---------------------------------LTGEKQQTLSSAF--------- 122 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECC---------------------------------C---------------------
T ss_pred CceEe-cCCEEEEEeCCCEEEEEEC---------------------------------CCCcEEEEecCCC---------
Confidence 0000 1223444444445555554 4444333221110
Q ss_pred ECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeC
Q psy17863 182 SHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLD 261 (341)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (341)
...++|++..+++++.|+.|+.||.++++.+..+..+.. ... ++.
T Consensus 123 -------------------------------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~--~~~--~~~ 167 (369)
T 2hz6_A 123 -------------------------------ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY--AAS--LPE 167 (369)
T ss_dssp -----------------------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE--CCB--CCC
T ss_pred -------------------------------cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc--cCc--ccc
Confidence 011234566788888999999999999988776653221 111 333
Q ss_pred CCC---CEEEEecCCCcEEEEeeeCCCceEEEEeeeeccce-EEEEEcCCCc
Q psy17863 262 SKD---SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVV-NSLCSHPTRK 309 (341)
Q Consensus 262 ~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~ 309 (341)
.+. ..+++++.||.++.||..+++.+.... ...++ ....+++++.
T Consensus 168 ~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~---~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 168 DDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN---YASPVVAFYVWQREGL 216 (369)
T ss_dssp CCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE---CSSCEEEEEECTTSSC
T ss_pred CCccccceEEEECCCCEEEEEECCCCcEEEEec---CCCceEEEEEecCCce
Confidence 322 467778899999999999999887776 23344 3345556664
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=5.8e-12 Score=102.80 Aligned_cols=237 Identities=11% Similarity=-0.009 Sum_probs=155.5
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEe----------CCCeEEEEcCCCcceeeEecCc-------ccceeEEEEec
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCG----------SDKKIKLWNPYRNLLLKTYGGH-------AHEVNDATAAC 65 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~-------~~~v~~~~~~~ 65 (341)
++.+.++..-..+ .+.++||+++++++. .++.|.+||+.+++.+.++... ......++++|
T Consensus 56 ~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp 133 (368)
T 1mda_H 56 GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA 133 (368)
T ss_dssp TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT
T ss_pred CeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC
Confidence 4566777766666 799999999998886 3689999999999999998643 12456789999
Q ss_pred CCCEEEEecC--CCcEEE--EECCCCceeeeecccCccEEEEEEcCCC-cEEEEecCCCeEEEEEecC-----CCC----
Q psy17863 66 DSSQIASGAS--DKSVIL--WEVTTGQPVRRWREHASKVTCVKFNEDS-SVVISGSQDNTVMMWDVKS-----RSH---- 131 (341)
Q Consensus 66 ~~~~l~~~~~--dg~i~i--w~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~-----~~~---- 131 (341)
||++++++.. +..+.+ +|..+ +..+... +. ..+.|++ ..+++.+.||.+.+.++.+ ++.
T Consensus 134 DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~ 206 (368)
T 1mda_H 134 SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC 206 (368)
T ss_dssp TSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred CCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEe
Confidence 9999998875 466888 88876 3444311 11 1122332 3444556677777777765 111
Q ss_pred --------cCeEEeecCCCceEEEeeccCeEEEEEccCCcc--eeeeEeee-----cC---ceEEEEEECCCCceEEEeC
Q psy17863 132 --------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQ--ISTLIHSV-----GK---AVVNSLCSHPTRKHIMSAC 193 (341)
Q Consensus 132 --------~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~--~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~ 193 (341)
.+. . ...++.++..+. +.+.+.|...... ...+.... .. .....++++|+++.++++.
T Consensus 207 t~~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~ 282 (368)
T 1mda_H 207 TGAQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT 282 (368)
T ss_dssp CTTSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred eeeeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEe
Confidence 111 1 444555555556 8999999865321 11111100 00 0011267999988877642
Q ss_pred ----------CCceEEEEccccc------CCCCeEEEEEccCCCE-EEEee-cCCeEEEEeccccceeeeecCcccc
Q psy17863 194 ----------GNNVKLWTAEEDY------GQEPIVDACFTRDCQC-ILTCS-TDECLRLFDKATGELLEEYKGHKSG 252 (341)
Q Consensus 194 ----------~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~ 252 (341)
++.+.++|..+.. .......++|+|||+. +++.. .++.|.++|+.+++.+..+.....+
T Consensus 283 ~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P 359 (368)
T 1mda_H 283 VEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359 (368)
T ss_dssp EECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC
T ss_pred ccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCC
Confidence 2466799987765 2235678999999984 55555 5899999999999999988765543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.2e-09 Score=94.92 Aligned_cols=302 Identities=8% Similarity=0.128 Sum_probs=194.0
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEe-cCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeec
Q psy17863 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTY-GGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 94 (341)
Q Consensus 16 v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 94 (341)
|.++...+++++.+ ++.++-|..|+..+++..... ......|.++...+++.+.+....+| +..||..+++......
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEEEeec
Confidence 88888888886555 555545888987766543221 12345688888887776554433445 8899987765432221
Q ss_pred c-------cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC---------------CcCeEEeecCCCceEEEeeccC
Q psy17863 95 E-------HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS---------------HHPIQCCLDSKDSQIFCGSSDG 152 (341)
Q Consensus 95 ~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------------~~~~~~~~~~~~~~~~~~~~~g 152 (341)
. ....|.++...+++.+.+ |+.+ -|.+||..+.. ...+..+....++.+..|+.++
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~ 330 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFG 330 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSS
T ss_pred CCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCC
Confidence 1 235699999998887554 4444 57788765432 1335556666677888899888
Q ss_pred eEEEEEccCCcceeeeE----eeecCceEEEEEECCCCceEEEeCCCceEEEEccccc---------------CCCCeEE
Q psy17863 153 KIYKWQLVDSSQISTLI----HSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY---------------GQEPIVD 213 (341)
Q Consensus 153 ~i~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------------~~~~i~~ 213 (341)
-|..++..+........ .......|.++...+++.+.+.+.++.+..|+..... ....|.+
T Consensus 331 Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 410 (795)
T 4a2l_A 331 GLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKA 410 (795)
T ss_dssp CEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEE
T ss_pred CeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEE
Confidence 89999876543221111 0112346899999999998888877788888765421 1356888
Q ss_pred EEEccCCCEEEEeecCCeEEEEeccccceeeeec----CcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEE
Q psy17863 214 ACFTRDCQCILTCSTDECLRLFDKATGELLEEYK----GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST 289 (341)
Q Consensus 214 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 289 (341)
+...++++.|.+|+.++-|.+||..+++...... .....+..+ ..+++|++.+. +. +-+.+|+..+++.. .
T Consensus 411 i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i--~~d~~g~lwig-t~-~Gl~~~~~~~~~~~-~ 485 (795)
T 4a2l_A 411 VYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAI--LPDGEGNLWLG-TL-SALVRFNPEQRSFT-T 485 (795)
T ss_dssp EEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEE--EECSSSCEEEE-ES-SCEEEEETTTTEEE-E
T ss_pred EEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEE--EECCCCCEEEE-ec-CceeEEeCCCCeEE-E
Confidence 9888898866777777779999988765432211 123345555 67777765544 44 45888987665432 2
Q ss_pred EEe-----eeeccceEEEEEcCCCcEEEEeCCCcEEEEEcccc
Q psy17863 290 LIH-----SVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED 327 (341)
Q Consensus 290 ~~~-----~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~ 327 (341)
+.. ......|.++...++|++.+... +.+..|+..++
T Consensus 486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~ 527 (795)
T 4a2l_A 486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGL 527 (795)
T ss_dssp CCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETT
T ss_pred ccccccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCC
Confidence 221 01236789999999998777665 55778876543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-10 Score=96.25 Aligned_cols=243 Identities=9% Similarity=0.072 Sum_probs=156.8
Q ss_pred CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccE---
Q psy17863 24 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKV--- 100 (341)
Q Consensus 24 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v--- 100 (341)
++..++.++.++.|..+|..+++.+................ +..+++++.++.|..+|..+|+.+..+.......
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 35577788889999999999999887776443322222232 4578888889999999999999887765432211
Q ss_pred --EEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeE------------------EeecCCCceEEEeeccCeEEEEEcc
Q psy17863 101 --TCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ------------------CCLDSKDSQIFCGSSDGKIYKWQLV 160 (341)
Q Consensus 101 --~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------------~~~~~~~~~~~~~~~~g~i~~~d~~ 160 (341)
...... +..++.++.++.+..+|..+++..-.. ......++.++.++.++.+..+|..
T Consensus 180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~ 257 (376)
T 3q7m_A 180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR 257 (376)
T ss_dssp CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT
T ss_pred CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC
Confidence 111222 346778888999999998876531111 1111124578888889999999999
Q ss_pred CCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc--------CCCCeEEEEEccCCCEEEEeecCCeE
Q psy17863 161 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY--------GQEPIVDACFTRDCQCILTCSTDECL 232 (341)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~i 232 (341)
+++........ ....+... ++..++...++.+..+|..+.. .......... .+..+++++.+|.+
T Consensus 258 tG~~~w~~~~~----~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l 330 (376)
T 3q7m_A 258 SGQIMWKRELG----SVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYL 330 (376)
T ss_dssp TCCEEEEECCC----CEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEE
T ss_pred CCcEEeeccCC----CCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeE
Confidence 88876554321 12333332 4455555556788888876543 1111222222 24568888899999
Q ss_pred EEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEe
Q psy17863 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 280 (341)
Q Consensus 233 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (341)
.++|..+++.+..+......+.... .. .+..|+.++.+|.|+.|+
T Consensus 331 ~~~d~~tG~~~~~~~~~~~~~~~~~-~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 331 HWINVEDGRFVAQQKVDSSGFQTEP-VA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEETTTCCEEEEEECCTTCBCSCC-EE--ETTEEEEEBTTSCEEEEE
T ss_pred EEEECCCCcEEEEEecCCCcceeCC-EE--ECCEEEEEeCCCEEEEEe
Confidence 9999999998877765333332210 11 245788889999999987
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-11 Score=99.87 Aligned_cols=218 Identities=12% Similarity=0.060 Sum_probs=135.9
Q ss_pred eeCCcEEEEEEccCCCEEEEEeC-----CCeEEEEcCCCcceeeEecCc------ccceeEEEEecCCCEE-EEec---C
Q psy17863 11 CKQGAIRAVRFNVDGSYCLTCGS-----DKKIKLWNPYRNLLLKTYGGH------AHEVNDATAACDSSQI-ASGA---S 75 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~t~~~-----dg~i~iw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l-~~~~---~ 75 (341)
.|-..+..++++++++++++-.. ++.|.+||+.+++.+..+... ...+..+++++++..+ ++-. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 35578999999999986665433 578999999988877766432 2356899999865444 5544 5
Q ss_pred CCcEEEEECCCCceeeeecccCccEE-EEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeE
Q psy17863 76 DKSVILWEVTTGQPVRRWREHASKVT-CVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 76 dg~i~iw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 154 (341)
++.|.+||+.+++..+.+..|..... ...+.+++..+.+.+.++.++.|..
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~---------------------------- 195 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL---------------------------- 195 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------------
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------------
Confidence 78899999998887776655422110 0233445655655566665544321
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccc-------------------cCCCCeEEEE
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED-------------------YGQEPIVDAC 215 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------------~~~~~i~~~~ 215 (341)
.+..++++|+++.++.+....-++|.+... .+......++
T Consensus 196 ---------------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia 254 (343)
T 2qe8_A 196 ---------------------GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGIS 254 (343)
T ss_dssp ---------------------CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEE
T ss_pred ---------------------ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEE
Confidence 134566666665555543222233332210 0112345688
Q ss_pred EccCCCEEEEeecCCeEEEEeccccceeeeecCc-ccceeEEEEEeCCCCCEEEEecCCCcEEEE
Q psy17863 216 FTRDCQCILTCSTDECLRLFDKATGELLEEYKGH-KSGDFRIECCLDSKDSQIFCGSSDGKIYKW 279 (341)
Q Consensus 216 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 279 (341)
++++|+++++...++.|.+||..+++........ ......+ ++.++++++++.+..+.+.+|
T Consensus 255 ~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~v--a~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 255 IDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSF--NFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp ECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEE--EECTTSCEEEEECCGGGSGGG
T ss_pred ECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCee--EECCCCcEEEEeCcccccccc
Confidence 9999999999888999999998556543333221 2223344 888888887777665555444
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-11 Score=106.63 Aligned_cols=259 Identities=12% Similarity=0.133 Sum_probs=171.2
Q ss_pred CCEEEEecCCCcEEEEECCCCceeeeecccCcc-----------EEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeE
Q psy17863 67 SSQIASGASDKSVILWEVTTGQPVRRWREHASK-----------VTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ 135 (341)
Q Consensus 67 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 135 (341)
+..|++++.++.|..+|..+|+.+.++...... ...+++ ++..++.++.|+.|..+|.++++..-..
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 456777777899999999999998877543210 112233 3567888888999999998887632111
Q ss_pred Ee-------------ecCCCceEEEeec------cCeEEEEEccCCcceeeeEeeecC----------------------
Q psy17863 136 CC-------------LDSKDSQIFCGSS------DGKIYKWQLVDSSQISTLIHSVGK---------------------- 174 (341)
Q Consensus 136 ~~-------------~~~~~~~~~~~~~------~g~i~~~d~~~~~~~~~~~~~~~~---------------------- 174 (341)
.. ....++.+++++. ++.|+.+|..+++.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~ 234 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred cCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCc
Confidence 11 1112456666664 799999999999988776532211
Q ss_pred --------ceEEEEEECCCCceEEEeCCC--------------------ceEEEEccccc---------C-------CCC
Q psy17863 175 --------AVVNSLCSHPTRKHIMSACGN--------------------NVKLWTAEEDY---------G-------QEP 210 (341)
Q Consensus 175 --------~~~~~~~~~~~~~~~~~~~~~--------------------~i~~~~~~~~~---------~-------~~~ 210 (341)
.....++++|++..++.+..+ .+..+|..+.. + ...
T Consensus 235 ~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 314 (677)
T 1kb0_A 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (677)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCC
Confidence 111356778888777766542 36666655432 1 112
Q ss_pred eEEEEEccCC---CEEEEeecCCeEEEEeccccceeeeecCcccc-----------ee-----------E----------
Q psy17863 211 IVDACFTRDC---QCILTCSTDECLRLFDKATGELLEEYKGHKSG-----------DF-----------R---------- 255 (341)
Q Consensus 211 i~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----------~~-----------~---------- 255 (341)
..-+....+| +.++.++.+|.++++|..+|+.+..+...... +. .
T Consensus 315 p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~ 394 (677)
T 1kb0_A 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN 394 (677)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC
T ss_pred cEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccC
Confidence 2223334477 67899999999999999999987665422100 00 0
Q ss_pred -EEEEeCCCCCEEEEecC-------------------------------------------CCcEEEEeeeCCCceEEEE
Q psy17863 256 -IECCLDSKDSQIFCGSS-------------------------------------------DGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 256 -~~~~~~~~~~~l~~~~~-------------------------------------------dg~i~iwd~~~~~~~~~~~ 291 (341)
-..+++|++.++++... .|.|..||+.+++.+....
T Consensus 395 w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~ 474 (677)
T 1kb0_A 395 WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE 474 (677)
T ss_dssp SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE
T ss_pred CCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC
Confidence 01267888888877532 2789999999999888876
Q ss_pred eeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 292 HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 292 ~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
+..++....+..++..++.++ |+.+++||..++...
T Consensus 475 ---~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 475 ---HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp ---ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ---CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 334455556677788888888 999999999877544
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.42 E-value=6.4e-11 Score=100.71 Aligned_cols=249 Identities=8% Similarity=-0.003 Sum_probs=171.2
Q ss_pred cCCCEEEEEeC-CCeEEEEcCCCcceeeEecC-cccceeEEEE-e-cCCCEEEEec------------------CCCcEE
Q psy17863 23 VDGSYCLTCGS-DKKIKLWNPYRNLLLKTYGG-HAHEVNDATA-A-CDSSQIASGA------------------SDKSVI 80 (341)
Q Consensus 23 ~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~l~~~~------------------~dg~i~ 80 (341)
+||+++..... ++.|.+.|+.+.+....+.- .......+++ + |+++++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 38888877665 56799999999998774432 2245778887 5 8999998884 346799
Q ss_pred EEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCC---------------eEEEEEecCCCCcCeEEeecCCCceE
Q psy17863 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN---------------TVMMWDVKSRSHHPIQCCLDSKDSQI 145 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------------~i~iwd~~~~~~~~~~~~~~~~~~~~ 145 (341)
+.|.++.+...++.-.. ....++++|+|+++++.+.+. .+.+.|...... ....+...
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~------~v~~Gk~~ 251 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK------AIAAGDYQ 251 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH------HHHHTCSE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE------eccCCCee
Confidence 99999998888776433 346688999999999988663 355555433210 00011111
Q ss_pred EEeeccCeEEEEEccC--Ccc-eeeeEeeecCceEEEEEECCCCceEEEeCC--CceEEEEccccc--------------
Q psy17863 146 FCGSSDGKIYKWQLVD--SSQ-ISTLIHSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEEDY-------------- 206 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~-------------- 206 (341)
.. +.+.+.|.++ .+. +..+... ....++.++|||++++++.. +.+.++|+.+..
T Consensus 252 ~i----~~V~VID~~~~~~~~~~~~Ipvg---~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~ 324 (595)
T 1fwx_A 252 EL----NGVKVVDGRKEASSLFTRYIPIA---NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV 324 (595)
T ss_dssp EE----TTEEEEECSGGGCCSSEEEEEEE---SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred EE----CcEEEEeCcccCCceeEEEEecC---CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE
Confidence 11 5599999988 433 3333322 24678999999999999874 789999998541
Q ss_pred ----CCCCeEEEEEccCCCEEEEeecCCeEEEEeccc----------cceeeeecCcccceeE---EEEEeCCCCCEEEE
Q psy17863 207 ----GQEPIVDACFTRDCQCILTCSTDECLRLFDKAT----------GELLEEYKGHKSGDFR---IECCLDSKDSQIFC 269 (341)
Q Consensus 207 ----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~----------~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 269 (341)
.......++|+|+|...++...|+.|.+||+.+ .+.+.++..|-.+... .....+|||++|++
T Consensus 325 ~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~ 404 (595)
T 1fwx_A 325 AEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVC 404 (595)
T ss_dssp ECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEE
T ss_pred EEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEE
Confidence 335678899999995556777899999999887 4566677666543211 11246899999998
Q ss_pred ecC---CCc----------EEEEeeeCCC
Q psy17863 270 GSS---DGK----------IYKWQLVDSS 285 (341)
Q Consensus 270 ~~~---dg~----------i~iwd~~~~~ 285 (341)
... |.. -.++|+..++
T Consensus 405 ~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 405 LSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred cCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 743 432 1889985444
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-10 Score=90.94 Aligned_cols=203 Identities=10% Similarity=0.105 Sum_probs=130.2
Q ss_pred eCCcEEEEEEccC-CCEEEEEeCCCeEEEEcCCCcceeeE-ecC----cccceeEEEEecCCCEEEEecCC---------
Q psy17863 12 KQGAIRAVRFNVD-GSYCLTCGSDKKIKLWNPYRNLLLKT-YGG----HAHEVNDATAACDSSQIASGASD--------- 76 (341)
Q Consensus 12 h~~~v~~~~~~~~-~~~l~t~~~dg~i~iw~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d--------- 76 (341)
+...+.+++++++ |+++++.. .+.|.+||.. ++.... ... ....+.+++++++++++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 5567899999999 76555544 4479999987 654332 211 12458899999999887776554
Q ss_pred ------CcEEEEECCCCceeeeecccCccEEEEEEc----CCCcEEEEe-cCCCeEEEEEecCCCCcCeEEeecCCCceE
Q psy17863 77 ------KSVILWEVTTGQPVRRWREHASKVTCVKFN----EDSSVVISG-SQDNTVMMWDVKSRSHHPIQCCLDSKDSQI 145 (341)
Q Consensus 77 ------g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 145 (341)
+.|..|+.. ++.... ..+......++++ |+++.++.+ ..++.|.+|++....
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g--------------- 209 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPA--------------- 209 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETT---------------
T ss_pred cccCCCCeEEEECCC-CCEEEe-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCC---------------
Confidence 567777765 544332 2233456788999 888655544 556788888765210
Q ss_pred EEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCC-CCeEEEEEccCCCEEE
Q psy17863 146 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQ-EPIVDACFTRDCQCIL 224 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~i~~~~~~~~~~~l~ 224 (341)
.+.. ...+.. .+. +. .....++++++|++++
T Consensus 210 -------~~~~--------~~~~~~------------~~~---------------------~~~~~p~~i~~d~~G~l~v 241 (314)
T 1pjx_A 210 -------KIEN--------KKVWGH------------IPG---------------------THEGGADGMDFDEDNNLLV 241 (314)
T ss_dssp -------EEEE--------EEEEEE------------CCC---------------------CSSCEEEEEEEBTTCCEEE
T ss_pred -------cccc--------ceEEEE------------CCC---------------------CCCCCCCceEECCCCCEEE
Confidence 0000 000000 000 01 2345677888888777
Q ss_pred EeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEE-EEecCCCcEEEEeeeC
Q psy17863 225 TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQI-FCGSSDGKIYKWQLVD 283 (341)
Q Consensus 225 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~ 283 (341)
+...++.|.+||..+++.+..+..+...+..+ +++++++.| ++...++.|..|++..
T Consensus 242 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i--~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 242 ANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNL--HFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEETTTEEEEECTTCBSCSEEEECSSSCEEEE--EECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEcCCCEEEEEcCCCCcEeEEEeCCCCCceeE--EECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 77778899999988787777776665556666 789999855 4555678899998764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.41 E-value=3.7e-10 Score=90.40 Aligned_cols=194 Identities=13% Similarity=0.173 Sum_probs=121.5
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecC----cccceeEEEEecCCCEEEEecC---------CCc
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG----HAHEVNDATAACDSSQIASGAS---------DKS 78 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~---------dg~ 78 (341)
+...+.+++++|+|+++++ . ++.|.+||..+++....... ....++.++++|+|+++++... ...
T Consensus 52 ~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~ 129 (297)
T 3g4e_A 52 MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQ 129 (297)
T ss_dssp CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCC
Confidence 4577999999999995554 4 56799999887764332221 2345889999999997665422 123
Q ss_pred EEEEECCCCceeeeecccCccEEEEEEcCCCcEEE-EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 79 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
-.+|.+........+..+......++|+|+++.|+ +.+.++.|..|++.... |.+.
T Consensus 130 ~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~---------------------G~~~-- 186 (297)
T 3g4e_A 130 GALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQT---------------------GQIS-- 186 (297)
T ss_dssp EEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTT---------------------CCEE--
T ss_pred cEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCC---------------------Cccc--
Confidence 45555543322222333344568899999998664 45556788888874211 0000
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEec
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDK 237 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 237 (341)
....+..... .......++++++|++.++....+.|.+||.
T Consensus 187 ------~~~~~~~~~~---------------------------------~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~ 227 (297)
T 3g4e_A 187 ------NRRSVYKLEK---------------------------------EEQIPDGMCIDAEGKLWVACYNGGRVIRLDP 227 (297)
T ss_dssp ------EEEEEEECCG---------------------------------GGCEEEEEEEBTTSCEEEEEETTTEEEEECT
T ss_pred ------CcEEEEECCC---------------------------------CCCCCCeeEECCCCCEEEEEcCCCEEEEEcC
Confidence 0000000000 0122455677888887777777888999999
Q ss_pred cccceeeeecCcccceeEEEEEeC-CCCCEEEEec
Q psy17863 238 ATGELLEEYKGHKSGDFRIECCLD-SKDSQIFCGS 271 (341)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 271 (341)
.+++.+..+..+...++++ +|. |+++.|+.++
T Consensus 228 ~tG~~~~~i~~p~~~~t~~--~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 228 VTGKRLQTVKLPVDKTTSC--CFGGKNYSEMYVTC 260 (297)
T ss_dssp TTCCEEEEEECSSSBEEEE--EEESGGGCEEEEEE
T ss_pred CCceEEEEEECCCCCceEE--EEeCCCCCEEEEEc
Confidence 9899988888776666666 787 7777665544
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-08 Score=91.25 Aligned_cols=302 Identities=9% Similarity=0.109 Sum_probs=194.3
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecC-------cccceeEEEEecCCCEEEEecCCCcEEEEECC
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG-------HAHEVNDATAACDSSQIASGASDKSVILWEVT 85 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 85 (341)
...|.++...+++.+.+ |+.++-+.+||..+++....... ....|.++...++|.+.+ |+.+| |.+|+..
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFND-LNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESSC-EEEEETT
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCCh-hheEcCC
Confidence 45688888888886555 44444488899876554332211 135699999888886544 44555 8999987
Q ss_pred CCceeeeec-------ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC--------------CcCeEEeecCCCce
Q psy17863 86 TGQPVRRWR-------EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS--------------HHPIQCCLDSKDSQ 144 (341)
Q Consensus 86 ~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--------------~~~~~~~~~~~~~~ 144 (341)
+++...... .....|.++...++|. |..|+.++-|..++..... ...+.++....++.
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~ 369 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN 369 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence 765433211 1235799999998886 5566666778888765422 12345555566778
Q ss_pred EEEeeccCeEEEEEccCCcceeeeEe------eecCceEEEEEECCCCc-eEEEeCCCceEEEEccccc-----------
Q psy17863 145 IFCGSSDGKIYKWQLVDSSQISTLIH------SVGKAVVNSLCSHPTRK-HIMSACGNNVKLWTAEEDY----------- 206 (341)
Q Consensus 145 ~~~~~~~g~i~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~----------- 206 (341)
+..|+.++-|..|+..+......... ......|.++...+++. +.+.+.++.+..++..+..
T Consensus 370 lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l 449 (795)
T 4a2l_A 370 LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQL 449 (795)
T ss_dssp EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCC
T ss_pred EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCc
Confidence 88899888899999876543322111 11235688999999999 6776666788888876432
Q ss_pred CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecC------cccceeEEEEEeCCCCCEEEEecCCCcEEEEe
Q psy17863 207 GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG------HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 280 (341)
Q Consensus 207 ~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (341)
....|.++...++|++.+. +.+ -+.+||..+++....... ....+..+ ..+++|++.+.. . +-+..|+
T Consensus 450 ~~~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i--~~d~~g~lWigt-~-~Gl~~~~ 523 (795)
T 4a2l_A 450 VNENVYAILPDGEGNLWLG-TLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTL--FRDSHKRLWIGG-E-EGLSVFK 523 (795)
T ss_dssp SCSCEEEEEECSSSCEEEE-ESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEE--EECTTCCEEEEE-S-SCEEEEE
T ss_pred CCCeeEEEEECCCCCEEEE-ecC-ceeEEeCCCCeEEEccccccccccCCceEEEE--EECCCCCEEEEe-C-CceEEEe
Confidence 2356888988888885554 444 488899876654322111 12345555 677888655544 4 5688899
Q ss_pred eeCCCceEEEEe-----eeeccceEEEEEcCCCcEEEEeCCCcEEEEEcccc
Q psy17863 281 LVDSSQISTLIH-----SVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED 327 (341)
Q Consensus 281 ~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~ 327 (341)
..+++. .+.. ......|.++...++|.+.++... .+..|+..++
T Consensus 524 ~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 524 QEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEKDK 572 (795)
T ss_dssp EETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETTTT
T ss_pred CCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCCCC
Confidence 877654 2220 123457999999999987665545 5777776543
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.7e-11 Score=104.67 Aligned_cols=259 Identities=13% Similarity=0.172 Sum_probs=167.6
Q ss_pred CCEEEEecCCCcEEEEECCCCceeeeecccCcc----------E-EEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeE
Q psy17863 67 SSQIASGASDKSVILWEVTTGQPVRRWREHASK----------V-TCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ 135 (341)
Q Consensus 67 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 135 (341)
+..|++++.++.|..+|..+|+.+.++...... + ..+++ .+..++.++.|+.|..+|.++++..-..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 557777788899999999999998877543211 0 11222 3557888889999999999887632111
Q ss_pred Ee----------ecC---CCceEEEeec------cCeEEEEEccCCcceeeeEeeec-----------------------
Q psy17863 136 CC----------LDS---KDSQIFCGSS------DGKIYKWQLVDSSQISTLIHSVG----------------------- 173 (341)
Q Consensus 136 ~~----------~~~---~~~~~~~~~~------~g~i~~~d~~~~~~~~~~~~~~~----------------------- 173 (341)
.. ... .++.++++.. +|.|..||..+++.+..+.....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY 227 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence 11 111 1456666653 68999999999998877653110
Q ss_pred ------CceEEEEEECCCCceEEEeCCC--------------------ceEEEEccccc---------CC-------CCe
Q psy17863 174 ------KAVVNSLCSHPTRKHIMSACGN--------------------NVKLWTAEEDY---------GQ-------EPI 211 (341)
Q Consensus 174 ------~~~~~~~~~~~~~~~~~~~~~~--------------------~i~~~~~~~~~---------~~-------~~i 211 (341)
......++++|+...++.+..+ .+..+|..+.. +. .+.
T Consensus 228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~ 307 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM 307 (689)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence 0111256778877777776643 27777766543 11 122
Q ss_pred EEEEEccCCC---EEEEeecCCeEEEEeccccceeeeecCccc-cee-------------------------E-------
Q psy17863 212 VDACFTRDCQ---CILTCSTDECLRLFDKATGELLEEYKGHKS-GDF-------------------------R------- 255 (341)
Q Consensus 212 ~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~-------------------------~------- 255 (341)
.......+|+ .++.++.+|.++++|.++|+.+...+.... ... .
T Consensus 308 ~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~G 387 (689)
T 1yiq_A 308 ILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWG 387 (689)
T ss_dssp EEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTC
T ss_pred EEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccc
Confidence 2222333565 788999999999999999988743321110 000 0
Q ss_pred ----EEEEeCCCCCEEEEecC---------------------------------------------CCcEEEEeeeCCCc
Q psy17863 256 ----IECCLDSKDSQIFCGSS---------------------------------------------DGKIYKWQLVDSSQ 286 (341)
Q Consensus 256 ----~~~~~~~~~~~l~~~~~---------------------------------------------dg~i~iwd~~~~~~ 286 (341)
-..+++|+..++++... +|.|+.||+.+++.
T Consensus 388 g~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~ 467 (689)
T 1yiq_A 388 AHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQA 467 (689)
T ss_dssp SSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEE
T ss_pred ccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCe
Confidence 01367787777776421 47899999999999
Q ss_pred eEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 287 ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 287 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
+.... . ..+...-.+...+.+++.++ |+.++.||.+++...
T Consensus 468 ~W~~~--~-~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 468 AWEVP--Y-VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp EEEEE--E-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred EeEcc--C-CCCccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 88887 2 23344445666788888999 999999999887544
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.3e-11 Score=98.05 Aligned_cols=253 Identities=15% Similarity=0.140 Sum_probs=158.2
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceee
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVR 91 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 91 (341)
+...+.++...+++. +..++.+ |..+|. +++.+..+...........+. +..+..++.++.+..+|.. ++...
T Consensus 58 ~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~ 130 (330)
T 3hxj_A 58 GEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKW 130 (330)
T ss_dssp GGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEE
T ss_pred CCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEE
Confidence 334556777777775 4444544 888886 666655554333333334443 5567778888999999988 77776
Q ss_pred eecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------cCeEEeecCCCceEEEeeccCeEEEEEccCCc
Q psy17863 92 RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSS 163 (341)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~ 163 (341)
....+...+.++...+++. ++.++.++.+..+|.. ++. ..+.......++.+..++ +.+..+| .+++
T Consensus 131 ~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~ 205 (330)
T 3hxj_A 131 RFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGT 205 (330)
T ss_dssp EEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSC
T ss_pred EEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCc
Confidence 6665555566677777776 5667778899999877 331 111222233455666666 8889999 5655
Q ss_pred ceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEEEEec
Q psy17863 164 QISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLFDK 237 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 237 (341)
....... ....+.++...+++...+.+.++.+..++..... ....+..+.+.+++. |.+++.+|.|..+|.
T Consensus 206 ~~~~~~~--~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 206 EKWNFYA--GYWTVTRPAISEDGTIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP 282 (330)
T ss_dssp EEEEECC--SSCCCSCCEECTTSCEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT
T ss_pred EEEEEcc--CCcceeceEECCCCeEEEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC
Confidence 5444332 2345777888888888887777777777643221 122233445555565 667778888999996
Q ss_pred cccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 238 ATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
+++.+..+......+..+ ..++++ .|..++.+|.+++...+.
T Consensus 283 -~g~~~~~~~~~~~~~~~~--~~d~~g-~l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 283 -DGTEKWNFETGSWIIATP--VIDENG-TIYFGTRNGKFYALFNLE 324 (330)
T ss_dssp -TSCEEEEEECSSCCCSCC--EECTTC-CEEEECTTSCEEEEEC--
T ss_pred -CCcEEEEEEcCCccccce--EEcCCC-EEEEEcCCCeEEEEeccc
Confidence 677666665444444444 555666 466688999999877543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-09 Score=88.06 Aligned_cols=93 Identities=11% Similarity=0.203 Sum_probs=65.9
Q ss_pred cCCCEEEE-EeCCCeEEEEcCCCc----ceeeEec-------CcccceeEEEEecCCCEEEEecCC------CcEEEEEC
Q psy17863 23 VDGSYCLT-CGSDKKIKLWNPYRN----LLLKTYG-------GHAHEVNDATAACDSSQIASGASD------KSVILWEV 84 (341)
Q Consensus 23 ~~~~~l~t-~~~dg~i~iw~~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~~ 84 (341)
+++++|+. +..++.|.++|+.+. +..+++. .....-..+...|++ .++++..+ |.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77887775 455789999998755 5556552 111234567788999 76666555 78999999
Q ss_pred CCCceeeeecccCc---cEEEEEEcCCCcEEEEec
Q psy17863 85 TTGQPVRRWREHAS---KVTCVKFNEDSSVVISGS 116 (341)
Q Consensus 85 ~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~ 116 (341)
++.+.+.++..... .-..+.|+|+++.+++..
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~ 206 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSE 206 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECB
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEcc
Confidence 99999988863222 234578899999888874
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=9.3e-11 Score=105.04 Aligned_cols=215 Identities=15% Similarity=0.197 Sum_probs=124.4
Q ss_pred CcccceeEEEEecCCCEEEEe-----cCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEec
Q psy17863 53 GHAHEVNDATAACDSSQIASG-----ASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 127 (341)
Q Consensus 53 ~~~~~v~~~~~~~~~~~l~~~-----~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 127 (341)
++...+..++|+|||++|+.+ +....|++||+++++.+... .+......++|+ |++.|+.++.+.. .
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~------~ 197 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKP------D 197 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCC------C
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCc------c
Confidence 355578889999999998843 33467999999999865431 111113567899 9998888876632 0
Q ss_pred CCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccC
Q psy17863 128 SRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYG 207 (341)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 207 (341)
. ..+........|++|++.+............. .+
T Consensus 198 ~--------------~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~-------------------------------~~ 232 (693)
T 3iuj_A 198 G--------------SELSARTDQHKVYFHRLGTAQEDDRLVFGAIP-------------------------------AQ 232 (693)
T ss_dssp ---------------------CCCCEEEEEETTSCGGGCEEEESCSG-------------------------------GG
T ss_pred c--------------ccccccCCCcEEEEEECCCCcccceEEEecCC-------------------------------CC
Confidence 0 00000011234666666554322111111000 00
Q ss_pred CCCeEEEEEccCCCEEEEee----cCCeEEEEeccccc-eeeeecCcccceeEEEEEeCCCCCEEE-EecC---CCcEEE
Q psy17863 208 QEPIVDACFTRDCQCILTCS----TDECLRLFDKATGE-LLEEYKGHKSGDFRIECCLDSKDSQIF-CGSS---DGKIYK 278 (341)
Q Consensus 208 ~~~i~~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~---dg~i~i 278 (341)
......+.++|||++|+... ..+.|+++|+.++. ....+..+....... +++++..|+ .... .+.|..
T Consensus 233 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~---~~~~g~~l~~~t~~~~~~~~l~~ 309 (693)
T 3iuj_A 233 HHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL---VDNKGSTLYLLTNRDAPNRRLVT 309 (693)
T ss_dssp CCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE---EEEETTEEEEEECTTCTTCEEEE
T ss_pred CeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE---EeccCCEEEEEECCCCCCCEEEE
Confidence 11234555666666654332 23589999987763 345555555444332 445555544 4433 367999
Q ss_pred EeeeCCCc--eEEEEeeeeccceEEEEEcCCCcEEEEeC--CC--cEEEEEcccc
Q psy17863 279 WQLVDSSQ--ISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GN--NVKLWTAEED 327 (341)
Q Consensus 279 wd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~--~i~vw~~~~~ 327 (341)
+++.++.. ...+. .+...+. .|+++++.|+... ++ .|++|++.++
T Consensus 310 ~d~~~~~~~~~~~l~--~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 310 VDAANPGPAHWRDLI--PERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EETTSCCGGGCEEEE--CCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EeCCCCCccccEEEe--cCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 99887755 34555 4544454 8899999888777 54 6888888643
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-09 Score=87.52 Aligned_cols=207 Identities=11% Similarity=0.058 Sum_probs=125.7
Q ss_pred ceeeEecCcccceeEEEEecCCC-EEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEE
Q psy17863 46 LLLKTYGGHAHEVNDATAACDSS-QIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 124 (341)
Q Consensus 46 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 124 (341)
..+..+...........|+|+++ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|..|
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRS 112 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEE
Confidence 34455555556678899999998 5667777899999997 454 34555566778999999999977766666778877
Q ss_pred EecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccc
Q psy17863 125 DVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 204 (341)
Q Consensus 125 d~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (341)
+.. ++ +..+ .......
T Consensus 113 ~~~-g~-----------------------~~~~-----------~~~~~~~----------------------------- 128 (305)
T 3dr2_A 113 DAD-GQ-----------------------AHLL-----------VGRYAGK----------------------------- 128 (305)
T ss_dssp CTT-SC-----------------------EEEE-----------ECEETTE-----------------------------
T ss_pred CCC-CC-----------------------EEEE-----------EeccCCC-----------------------------
Confidence 754 22 0000 0000000
Q ss_pred ccCCCCeEEEEEccCCCEEEE----eec-------------CCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEE
Q psy17863 205 DYGQEPIVDACFTRDCQCILT----CST-------------DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQI 267 (341)
Q Consensus 205 ~~~~~~i~~~~~~~~~~~l~~----~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (341)
....+..++++|+|+++++ |.. .+.|..+|..+++..... .......+ +++|+++.|
T Consensus 129 --~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl--~~spdg~~l 202 (305)
T 3dr2_A 129 --RLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGL--AFSPDEQTL 202 (305)
T ss_dssp --ECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEE--EECTTSSEE
T ss_pred --ccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcce--EEcCCCCEE
Confidence 0112334455555555554 221 246777777666543322 22223344 899999988
Q ss_pred EEecCC------CcEEEEeeeCCCceEEEE--eeeeccceEEEEEcCCCcEEEEeCCCcEEEEEccc
Q psy17863 268 FCGSSD------GKIYKWQLVDSSQISTLI--HSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 268 ~~~~~d------g~i~iwd~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
+.+... +.|++|++..+. +.... ..........++++++|++.++..+ .|.+|+.+.
T Consensus 203 yv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~~g 267 (305)
T 3dr2_A 203 YVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT-GVCVFDSDG 267 (305)
T ss_dssp EEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECCSS-EEEEECTTS
T ss_pred EEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEecCC-cEEEECCCC
Confidence 777654 789999987654 22111 0012334567899999995554434 488888754
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-07 Score=85.37 Aligned_cols=304 Identities=11% Similarity=0.112 Sum_probs=189.9
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec-------CcccceeEEEEecCCCEEEEecCCCcEEEEECCC
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-------GHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 86 (341)
..|.++...++|.+.+ ++.++-+..||..+++...... -....|.++...+++.+.+. +.+ -+.+||..+
T Consensus 163 ~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~ 239 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG-TSK-GLALFNANT 239 (781)
T ss_dssp CCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEE-ETT-EEEEEETTT
T ss_pred cceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEE-eCC-cHheECCCC
Confidence 4578888877776544 5556468889977654332111 01346888888887765554 444 489999876
Q ss_pred Cceeeeec-------ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC----------------------cCeEEe
Q psy17863 87 GQPVRRWR-------EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH----------------------HPIQCC 137 (341)
Q Consensus 87 ~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~----------------------~~~~~~ 137 (341)
++...... .....|.++...+++. |..|+..+-|.++|..+... ..+..+
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i 318 (781)
T 3v9f_A 240 ETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYI 318 (781)
T ss_dssp TEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEE
T ss_pred CcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEE
Confidence 65432211 1245689999888876 45555545677777654321 223444
Q ss_pred ecCCCceEEEeeccCeEEEEEccCCcceeeeE-------eeecCceEEEEEECCCCceEEEeCCCceEEEEccccc----
Q psy17863 138 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI-------HSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY---- 206 (341)
Q Consensus 138 ~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---- 206 (341)
....++.+..|+.++-|..++........... .......|.++...+++.+.+.+.++.+..++.....
T Consensus 319 ~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~ 398 (781)
T 3v9f_A 319 FQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYN 398 (781)
T ss_dssp EECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC
T ss_pred EEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEc
Confidence 55556678888888888888876544322211 1112356899999999988887767778888765421
Q ss_pred ------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeec--CcccceeEEEEEeCCCCCEEEEecCCCcEEE
Q psy17863 207 ------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK--GHKSGDFRIECCLDSKDSQIFCGSSDGKIYK 278 (341)
Q Consensus 207 ------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 278 (341)
....|.++...+++.+ .+|+.++-+..+|..+++...... .....+..+ ..+++++ |..|+. +-+..
T Consensus 399 ~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i--~~d~~g~-lwigt~-~Gl~~ 473 (781)
T 3v9f_A 399 KENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVF--YEDKNKK-IWIGTH-AGVFV 473 (781)
T ss_dssp -----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEE--EECTTSE-EEEEET-TEEEE
T ss_pred cCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEE--EECCCCC-EEEEEC-CceEE
Confidence 2356888888888874 456766778999987665432211 123445555 6677775 444555 55888
Q ss_pred EeeeCCCceEEEEee---eeccceEEEEEcCCCcEEEEeCCCcEEEEEccc
Q psy17863 279 WQLVDSSQISTLIHS---VGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 279 wd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
+|..+++........ .....|.++...++|.+.+...++-+..|+..+
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~ 524 (781)
T 3v9f_A 474 IDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDM 524 (781)
T ss_dssp EESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTC
T ss_pred EeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCC
Confidence 997766543322210 113579999999999887766534466677654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.31 E-value=6.1e-10 Score=94.80 Aligned_cols=275 Identities=11% Similarity=0.084 Sum_probs=163.0
Q ss_pred EEEEeCCCeEEEEcCCCcceeeEecCc---------------------------------------ccceeEEEEec---
Q psy17863 28 CLTCGSDKKIKLWNPYRNLLLKTYGGH---------------------------------------AHEVNDATAAC--- 65 (341)
Q Consensus 28 l~t~~~dg~i~iw~~~~~~~~~~~~~~---------------------------------------~~~v~~~~~~~--- 65 (341)
|.+|+..|.++|+-+.+++.++.+... .+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 668888999999987777666554210 01122244444
Q ss_pred --CCCEEEEecC-CCcEEEEECCCCceeeeecc-cCccEEEEEE-c-CCCcEEEEecC------------------CCeE
Q psy17863 66 --DSSQIASGAS-DKSVILWEVTTGQPVRRWRE-HASKVTCVKF-N-EDSSVVISGSQ------------------DNTV 121 (341)
Q Consensus 66 --~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~l~~~~~------------------d~~i 121 (341)
||++++.... ++.|.+.|+.+.++...+.- .......+++ + |+++++++++. ++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 7888777655 56799999999998774432 2345788888 5 89999998852 3456
Q ss_pred EEEEecCCCCc--------CeEEeecCCCceEEEeeccC---------------eEEEEEccCCcceeeeEeeecCceEE
Q psy17863 122 MMWDVKSRSHH--------PIQCCLDSKDSQIFCGSSDG---------------KIYKWQLVDSSQISTLIHSVGKAVVN 178 (341)
Q Consensus 122 ~iwd~~~~~~~--------~~~~~~~~~~~~~~~~~~~g---------------~i~~~d~~~~~~~~~~~~~~~~~~~~ 178 (341)
.+.|..+.+.. +-.....+++.++++.+.+. .+.++|.....
T Consensus 178 tvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~--------------- 242 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE--------------- 242 (595)
T ss_dssp EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH---------------
T ss_pred EEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee---------------
Confidence 66666653311 11111222223333333221 12222211110
Q ss_pred EEEECCCCceEEEeCCCceEEEEcccccC---------CCCeEEEEEccCCCEEEEee-cCCeEEEEeccccc-------
Q psy17863 179 SLCSHPTRKHIMSACGNNVKLWTAEEDYG---------QEPIVDACFTRDCQCILTCS-TDECLRLFDKATGE------- 241 (341)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~------- 241 (341)
...++|+.... +.+.+.|...... ......+.++|||+++++++ .+.+|.++|+.+.+
T Consensus 243 --~~v~~Gk~~~i---~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l 317 (595)
T 1fwx_A 243 --KAIAAGDYQEL---NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA 317 (595)
T ss_dssp --HHHHHTCSEEE---TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC
T ss_pred --EeccCCCeeEE---CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccccc
Confidence 01122322222 3477777766211 12345689999999877655 57889999998653
Q ss_pred -----eeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC----------CCceEEEEeeeeccc-----eEE
Q psy17863 242 -----LLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD----------SSQISTLIHSVGKAV-----VNS 301 (341)
Q Consensus 242 -----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~-----v~~ 301 (341)
...+...-.+ . ...+|+++|...++...|+.|.+||+.+ .+.+.++. .|..+ -..
T Consensus 318 ~~~~~v~~~v~vG~g-P--~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kid--V~yqpGh~~~~~g 392 (595)
T 1fwx_A 318 DPRSAVVAEPELGLG-P--LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD--VHYQPGHLKTVMG 392 (595)
T ss_dssp CGGGGEEECCBCCSC-E--EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE--CSSCEEEEEETTT
T ss_pred CcccceEEEcCCCCC-c--ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEee--cccccccceeccc
Confidence 2333332222 2 3348999995455677899999999987 45666666 33222 223
Q ss_pred EEEcCCCcEEEEeC--C-CcE-----------EEEEcccc
Q psy17863 302 LCSHPTRKHIMSAC--G-NNV-----------KLWTAEED 327 (341)
Q Consensus 302 ~~~~~~~~~l~~~~--d-~~i-----------~vw~~~~~ 327 (341)
+.++|||++|+++. . .++ .++|+.++
T Consensus 393 ~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 393 ETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp TSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred eEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence 35689999999987 3 445 88998544
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-09 Score=95.64 Aligned_cols=102 Identities=16% Similarity=0.148 Sum_probs=67.4
Q ss_pred CCEEEEEeCCCeEEEEcCCCcceeeEecCcccc----------e-eEEEEecCCCEEEEecCCCcEEEEECCCCceeeee
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE----------V-NDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 93 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 93 (341)
+..+++++.++.|.-+|..+|+.+.++...... + ..+++ .+..+++++.|+.|..+|..+|+.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 456777788999999999999998887533211 0 11222 3557888889999999999999988776
Q ss_pred cccC----ccEEE-EEEcCCCcEEEEecC------CCeEEEEEecCCC
Q psy17863 94 REHA----SKVTC-VKFNEDSSVVISGSQ------DNTVMMWDVKSRS 130 (341)
Q Consensus 94 ~~~~----~~v~~-~~~~~~~~~l~~~~~------d~~i~iwd~~~~~ 130 (341)
.... ..+.. .... ++ .++.+.. +|.|..+|.++++
T Consensus 144 ~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~ 189 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGK 189 (668)
T ss_dssp ECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred ccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCc
Confidence 5421 11111 0111 34 4555443 5889999988776
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.8e-09 Score=85.09 Aligned_cols=202 Identities=10% Similarity=0.117 Sum_probs=124.8
Q ss_pred cCCCEEEE-ecCCCcEEEEECCCC----ceeeeec------c-cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCc
Q psy17863 65 CDSSQIAS-GASDKSVILWEVTTG----QPVRRWR------E-HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH 132 (341)
Q Consensus 65 ~~~~~l~~-~~~dg~i~iw~~~~~----~~~~~~~------~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 132 (341)
+++++|++ +..++.|.++|+.+. +...+++ . ....-..+..+|++ .++++..+.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~------------- 158 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNE------------- 158 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEET-------------
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCc-------------
Confidence 77777665 556789999998755 4455542 1 11244567778888 555544331
Q ss_pred CeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeE
Q psy17863 133 PIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIV 212 (341)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 212 (341)
.|...|.+.++|..+.+.+......... ..--.
T Consensus 159 --------------~g~~~g~v~vlD~~T~~v~~~~~~~~~~---------------------------------~~~~Y 191 (462)
T 2ece_A 159 --------------EGEGPGGILMLDHYSFEPLGKWEIDRGD---------------------------------QYLAY 191 (462)
T ss_dssp --------------TSCSCCEEEEECTTTCCEEEECCSBCTT---------------------------------CCCCC
T ss_pred --------------CCCCCCeEEEEECCCCeEEEEEccCCCC---------------------------------ccccc
Confidence 0122355666666665555544322111 01112
Q ss_pred EEEEccCCCEEEEee-------------------cCCeEEEEeccccceeeeecCcc--cceeEEEEEeCCCCCEEEEec
Q psy17863 213 DACFTRDCQCILTCS-------------------TDECLRLFDKATGELLEEYKGHK--SGDFRIECCLDSKDSQIFCGS 271 (341)
Q Consensus 213 ~~~~~~~~~~l~~~~-------------------~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~ 271 (341)
.+-|+|+++.+++.. .+.+|.+||+.+++.+.++.... .....+.++++|++++++.++
T Consensus 192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~ 271 (462)
T 2ece_A 192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINM 271 (462)
T ss_dssp CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEE
T ss_pred eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEE
Confidence 344566666666653 36789999999888888776532 223345456799999988776
Q ss_pred ------CCCcEEEEeeeCCCce--EEEEeeee----------------ccceEEEEEcCCCcEEEEeC--CCcEEEEEcc
Q psy17863 272 ------SDGKIYKWQLVDSSQI--STLIHSVG----------------KAVVNSLCSHPTRKHIMSAC--GNNVKLWTAE 325 (341)
Q Consensus 272 ------~dg~i~iwd~~~~~~~--~~~~~~~~----------------~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~ 325 (341)
.+++|.+|....++.. ..+..... ......+.+||||++|.++. .+.|.+|++.
T Consensus 272 e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 272 VVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp EEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred eeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 5678988887654321 11110010 24578899999999999888 8899999997
Q ss_pred cc
Q psy17863 326 ED 327 (341)
Q Consensus 326 ~~ 327 (341)
..
T Consensus 352 d~ 353 (462)
T 2ece_A 352 NP 353 (462)
T ss_dssp ST
T ss_pred CC
Confidence 44
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.9e-09 Score=87.59 Aligned_cols=109 Identities=9% Similarity=0.012 Sum_probs=75.7
Q ss_pred EEEccCCCEEEEEeCCC--eEEEEcCCCcceeeEe----cCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeee
Q psy17863 19 VRFNVDGSYCLTCGSDK--KIKLWNPYRNLLLKTY----GGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR 92 (341)
Q Consensus 19 ~~~~~~~~~l~t~~~dg--~i~iw~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 92 (341)
++|+|+++.|+++..++ .|.+++...+.....+ ......+.+++++|++..|+.+..++.|..||..++.....
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 89999999988888766 7999987765544444 22456678899999555566677788999999987653222
Q ss_pred ----ecccCccE--EEEEEcC-CCcEEEEecCCCeEEEEEec
Q psy17863 93 ----WREHASKV--TCVKFNE-DSSVVISGSQDNTVMMWDVK 127 (341)
Q Consensus 93 ----~~~~~~~v--~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 127 (341)
..++...- ..++|+| ++.++++-..++.|+.|+..
T Consensus 256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~ 297 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD 297 (409)
T ss_dssp EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC
Confidence 12222222 2899999 46666666667788888754
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=5.2e-09 Score=80.85 Aligned_cols=207 Identities=12% Similarity=-0.021 Sum_probs=129.0
Q ss_pred cceeeEecCccc--ceeEEEEecCCCEEEEecC--CCcEEEEECCCCceeeeecccCc-cEEEEEEcCCCcEEEEe-cCC
Q psy17863 45 NLLLKTYGGHAH--EVNDATAACDSSQIASGAS--DKSVILWEVTTGQPVRRWREHAS-KVTCVKFNEDSSVVISG-SQD 118 (341)
Q Consensus 45 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~~d 118 (341)
.+.+.++. |.. ....+.|++++.+.++.+. ++.|.++|+.+++.+..+.-... ....+++. ++.|+.+ -.+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 34556665 443 3578999998755444443 57899999999998887652221 12234443 2233332 233
Q ss_pred CeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceE
Q psy17863 119 NTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVK 198 (341)
Q Consensus 119 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 198 (341)
+ .+.++|..+.+.+..+... . |.+
T Consensus 86 ~---------------------------------~v~viD~~t~~v~~~i~~g-~----------~~g------------ 109 (266)
T 2iwa_A 86 N---------------------------------IGFIYDRRTLSNIKNFTHQ-M----------KDG------------ 109 (266)
T ss_dssp S---------------------------------EEEEEETTTTEEEEEEECC-S----------SSC------------
T ss_pred C---------------------------------EEEEEECCCCcEEEEEECC-C----------CCe------------
Confidence 4 4455555554444443221 0 111
Q ss_pred EEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCccc--c---eeEEEEEeCCCCCEEEEecCC
Q psy17863 199 LWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKS--G---DFRIECCLDSKDSQIFCGSSD 273 (341)
Q Consensus 199 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~l~~~~~d 273 (341)
..+++||+.++++..++.|.++|..+.+.+..+..... + ...+ .+. ++...+....+
T Consensus 110 ---------------~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nel--e~~-dg~lyvn~~~~ 171 (266)
T 2iwa_A 110 ---------------WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNEL--EYI-NGEVWANIWQT 171 (266)
T ss_dssp ---------------CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE--EEE-TTEEEEEETTS
T ss_pred ---------------EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeE--EEE-CCEEEEecCCC
Confidence 22455666677777788999999999888777763321 1 2334 444 66555555568
Q ss_pred CcEEEEeeeCCCceEEEEeeee-----------ccceEEEEEcCCCcEEE-EeC-CCcEEEEEccccc
Q psy17863 274 GKIYKWQLVDSSQISTLIHSVG-----------KAVVNSLCSHPTRKHIM-SAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~-~~~-d~~i~vw~~~~~~ 328 (341)
+.|.+.|..+++.+..+...+. ....+.++|+|+++.|. ++. .+.+.+.++.+..
T Consensus 172 ~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 172 DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 8999999999999998873211 13568999999986555 454 8889888887643
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=9.1e-09 Score=83.40 Aligned_cols=188 Identities=10% Similarity=0.020 Sum_probs=115.4
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecC----cccceeEEEEecCCCEEEEecC------CCcEEE
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG----HAHEVNDATAACDSSQIASGAS------DKSVIL 81 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~------dg~i~i 81 (341)
+...+.+++|+|+|+++++. .+ .|.+||..+++....... ....+..++++|+|+++++... .+.|..
T Consensus 88 ~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~ 165 (326)
T 2ghs_A 88 LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH 165 (326)
T ss_dssp CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEE
Confidence 35679999999999877764 44 499999887765332221 1246889999999987665432 234555
Q ss_pred EECCCCceeeeecccCccEEEEEEcCCCcEEEEe-cCCCeEEEEEec--CC-CCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 82 WEVTTGQPVRRWREHASKVTCVKFNEDSSVVISG-SQDNTVMMWDVK--SR-SHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
++ +++.. .+..+......++|+|+++.++.+ +.++.|.+|++. ++ ..... .+ +.
T Consensus 166 ~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~------------------~~-~~ 223 (326)
T 2ghs_A 166 VA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKA------------------EV-FI 223 (326)
T ss_dssp EE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCC------------------EE-EE
T ss_pred Ee--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCc------------------eE-EE
Confidence 55 44433 332333456789999999866544 456788888875 22 10000 00 00
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEec
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDK 237 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 237 (341)
+... .......++++++|+++++...++.|.+||.
T Consensus 224 ~~~~---------------------------------------------~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~ 258 (326)
T 2ghs_A 224 DSTG---------------------------------------------IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT 258 (326)
T ss_dssp ECTT---------------------------------------------SSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred ECCC---------------------------------------------CCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence 0000 0112345667777776666666788999998
Q ss_pred cccceeeeecCcccceeEEEEEeC-CCCCEEEEec
Q psy17863 238 ATGELLEEYKGHKSGDFRIECCLD-SKDSQIFCGS 271 (341)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 271 (341)
+++.+..+..+...+..+ +|+ ++++.|+.++
T Consensus 259 -~g~~~~~i~~~~~~~~~~--af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 259 -DGNHIARYEVPGKQTTCP--AFIGPDASRLLVTS 290 (326)
T ss_dssp -TCCEEEEEECSCSBEEEE--EEESTTSCEEEEEE
T ss_pred -CCCEEEEEECCCCCcEEE--EEecCCCCEEEEEe
Confidence 577777776665556666 777 7777665544
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.5e-12 Score=105.24 Aligned_cols=183 Identities=12% Similarity=0.068 Sum_probs=99.1
Q ss_pred CCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceE
Q psy17863 66 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQI 145 (341)
Q Consensus 66 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 145 (341)
++..+++++.||.|+.||..+|+.+..++. +.+.+..+..++..+++++.||.|..||.++++.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-------------- 71 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-------------- 71 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC--------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce--------------
Confidence 577899999999999999999999888775 4444444555666677777788888887765441
Q ss_pred EEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEE
Q psy17863 146 FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILT 225 (341)
Q Consensus 146 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 225 (341)
+......... .+ ...++ +. ++..+++
T Consensus 72 -------------------~w~~~~~~~~-~~-----------------------------~~sp~----~~-~~~~v~~ 97 (369)
T 2hz6_A 72 -------------------LTKLPFTIPE-LV-----------------------------QASPC----RS-SDGILYM 97 (369)
T ss_dssp -------------------SEECSCCHHH-HH-----------------------------TTCSC----C------CCC
T ss_pred -------------------eeeeeccCcc-cc-----------------------------ccCce----Ee-cCCEEEE
Confidence 1111000000 00 00000 01 2334777
Q ss_pred eecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEc
Q psy17863 226 CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH 305 (341)
Q Consensus 226 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 305 (341)
++.++.++.||.++|+.+..+..+.. . ..+|++..+++++.|+.|+.||..+++.+..+..... ...++.
T Consensus 98 g~~dg~v~a~D~~tG~~~w~~~~~~~----~--~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~----~~~~~~ 167 (369)
T 2hz6_A 98 GKKQDIWYVIDLLTGEKQQTLSSAFA----D--SLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY----AASLPE 167 (369)
T ss_dssp CEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE----CCBCCC
T ss_pred EeCCCEEEEEECCCCcEEEEecCCCc----c--cccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc----cCcccc
Confidence 88899999999999999887765542 1 3445788999999999999999999998877762121 223344
Q ss_pred CCC---cEEEEeC-CCcEEEEEccccc
Q psy17863 306 PTR---KHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 306 ~~~---~~l~~~~-d~~i~vw~~~~~~ 328 (341)
++. ..+++++ ||.|+.||..++.
T Consensus 168 ~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 168 DDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp CCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred CCccccceEEEECCCCEEEEEECCCCc
Confidence 432 3455556 9999999987664
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=7.4e-08 Score=75.68 Aligned_cols=243 Identities=10% Similarity=0.054 Sum_probs=140.1
Q ss_pred CEEEEEeCCCeEEEEcCCCccee-----eEecCcccceeEEEEecCCCEEEE-ecCCCcEEEEECCCCceeeeecccCcc
Q psy17863 26 SYCLTCGSDKKIKLWNPYRNLLL-----KTYGGHAHEVNDATAACDSSQIAS-GASDKSVILWEVTTGQPVRRWREHASK 99 (341)
Q Consensus 26 ~~l~t~~~dg~i~iw~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~ 99 (341)
++|+.+. .+.|+.+++...... ..+.........++|++++..|+. -..++.|..++...+.....+......
T Consensus 2 ~~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 4455554 347888887654321 122222345789999997665554 455789999998765543333322346
Q ss_pred EEEEEEcCCCcEEE-EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEE
Q psy17863 100 VTCVKFNEDSSVVI-SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN 178 (341)
Q Consensus 100 v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~ 178 (341)
...+++++++..|+ +-...+.|.++++....... .. ........
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~---~~--------------------------------~~~~~~P~ 125 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV---LF--------------------------------DTGLVNPR 125 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---EE--------------------------------CSSCSSEE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE---EE--------------------------------ECCCCCcc
Confidence 78899998654444 44556778777765422100 00 00112345
Q ss_pred EEEECCCCceEEEeC-C---CceEEEEccccc-------CCCCeEEEEEccCCCEEE-EeecCCeEEEEeccccceeeee
Q psy17863 179 SLCSHPTRKHIMSAC-G---NNVKLWTAEEDY-------GQEPIVDACFTRDCQCIL-TCSTDECLRLFDKATGELLEEY 246 (341)
Q Consensus 179 ~~~~~~~~~~~~~~~-~---~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~ 246 (341)
.++++|++..+..+. . +.|..++++... .......++++|++..|+ +-...+.|.++|.........+
T Consensus 126 ~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~ 205 (267)
T 1npe_A 126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL 205 (267)
T ss_dssp EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE
T ss_pred EEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe
Confidence 666776444333322 1 345555544321 123567899999876555 4445678999998755443333
Q ss_pred cCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCc
Q psy17863 247 KGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 309 (341)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 309 (341)
..... ...+ +.. ++..+++....+.|..+|..+++.+..+.. +.......+++.|++.
T Consensus 206 ~~~~~-P~gi--~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~-g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 206 EGLQY-PFAV--TSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHP-HKQTRLYGITIALSQC 263 (267)
T ss_dssp ECCCS-EEEE--EEE-TTEEEEEETTTTEEEEEETTTTEEEEEECC-SSCCCCCCEEEECSCC
T ss_pred cCCCC-ceEE--EEe-CCEEEEEECCCCeEEEEeCCCCCceEEEcc-ccccccceeeecCccC
Confidence 32222 2334 444 344455555678999999988988888762 1122467788888764
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-07 Score=84.88 Aligned_cols=303 Identities=9% Similarity=0.076 Sum_probs=186.6
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec-------CcccceeEEEEecCCCEEEEecCCCcEEEEECCC
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-------GHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 86 (341)
..|.++...++|.+.+. +.+ -+.+||..+++...... .....|.++...+++. |..|+..+-|.++|..+
T Consensus 211 ~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIG-TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence 56889988888875554 444 58899977655432211 1235688998887775 55556544588899876
Q ss_pred Cceeeeec--------------ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC-----------------CcCeE
Q psy17863 87 GQPVRRWR--------------EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-----------------HHPIQ 135 (341)
Q Consensus 87 ~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------------~~~~~ 135 (341)
++...... .....|.++...++|. |..|+.++-|..++..... ...+.
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 366 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS 366 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence 64322111 1345789999988876 5666666677777765432 12244
Q ss_pred EeecCCCceEEEeeccCeEEEEEccCCcceeeeE-eeecCceEEEEEECCCCceEEEeCCCceEEEEccccc--------
Q psy17863 136 CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI-HSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY-------- 206 (341)
Q Consensus 136 ~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------- 206 (341)
.+....++.+..|+.++-|..++..+........ .......|.++...+++.+.+...++.+..++.....
T Consensus 367 ~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~ 446 (781)
T 3v9f_A 367 SVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEK 446 (781)
T ss_dssp EEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTT
T ss_pred EEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCC
Confidence 4455556778888877788888876543221110 1123356889999999988887777778888765321
Q ss_pred -CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCc-----ccceeEEEEEeCCCCCEEEEecCCCcEEEEe
Q psy17863 207 -GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGH-----KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 280 (341)
Q Consensus 207 -~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (341)
....|.++...+++.+.+ |+. +-|..||..+++........ ...+..+ ..+++|++.+ |+.++-+..+|
T Consensus 447 ~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i--~~d~~g~lWi-gt~~~Gl~~~~ 521 (781)
T 3v9f_A 447 NELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSI--AQDSEGRFWI-GTFGGGVGIYT 521 (781)
T ss_dssp TCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEE--EECTTCCEEE-EESSSCEEEEC
T ss_pred CCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEE--EEcCCCCEEE-EEcCCCEEEEe
Confidence 235688888888887544 455 45888998766543322211 2345555 6778776544 55544477788
Q ss_pred eeCCCceEEEEe--eeeccceEEEEEcCCCcEEEEeCCCcEEEEEccc
Q psy17863 281 LVDSSQISTLIH--SVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 281 ~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
..+++ ...+.. ......|.++...++|.+.++..+|-+..|+..+
T Consensus 522 ~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~ 568 (781)
T 3v9f_A 522 PDMQL-VRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARN 568 (781)
T ss_dssp TTCCE-EEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTT
T ss_pred CCCCe-EEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCC
Confidence 65543 333321 0123578999999999877765555436676554
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=8e-09 Score=79.82 Aligned_cols=161 Identities=4% Similarity=0.003 Sum_probs=106.9
Q ss_pred ceeeeEEeeeCCc--EEEEEEccCCCEEEEEeC--CCeEEEEcCCCcceeeEecCccc-ceeEEEEecCCCEEE-EecCC
Q psy17863 3 YTCVQTIDCKQGA--IRAVRFNVDGSYCLTCGS--DKKIKLWNPYRNLLLKTYGGHAH-EVNDATAACDSSQIA-SGASD 76 (341)
Q Consensus 3 ~~~~~~l~~h~~~--v~~~~~~~~~~~l~t~~~--dg~i~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~-~~~~d 76 (341)
++.++++. |... ...++|+|++.++++.+. ++.|.+.|+.+++.+..+.-... ....+++. ++.|+ +.-.+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence 45666775 6543 689999998765555543 57999999999999888753221 22344554 44554 44568
Q ss_pred CcEEEEECCCCceeeeeccc-CccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCe-------------EEeecCCC
Q psy17863 77 KSVILWEVTTGQPVRRWREH-ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPI-------------QCCLDSKD 142 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-------------~~~~~~~~ 142 (341)
+.+.++|..+.+.+.++... ... ..+++|++.++.+..++.|.++|..+.+.... ..+... +
T Consensus 86 ~~v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d 161 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N 161 (266)
T ss_dssp SEEEEEETTTTEEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred CEEEEEECCCCcEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-C
Confidence 99999999999998888633 222 33555777777777789999999887552111 111222 3
Q ss_pred ceEEEee-ccCeEEEEEccCCcceeeeEe
Q psy17863 143 SQIFCGS-SDGKIYKWQLVDSSQISTLIH 170 (341)
Q Consensus 143 ~~~~~~~-~~g~i~~~d~~~~~~~~~~~~ 170 (341)
+.+++.. .++.|.+.|..+++....+..
T Consensus 162 g~lyvn~~~~~~V~vID~~tg~V~~~I~~ 190 (266)
T 2iwa_A 162 GEVWANIWQTDCIARISAKDGTLLGWILL 190 (266)
T ss_dssp TEEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred CEEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence 3444444 578899999988887776654
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.6e-08 Score=86.77 Aligned_cols=281 Identities=11% Similarity=0.052 Sum_probs=165.3
Q ss_pred CCEEEEEeC-CCeEEEEcC-CCcceeeEecCcccc-----------eeEEEEecCCCE----EEEecCCCcEEEEECCCC
Q psy17863 25 GSYCLTCGS-DKKIKLWNP-YRNLLLKTYGGHAHE-----------VNDATAACDSSQ----IASGASDKSVILWEVTTG 87 (341)
Q Consensus 25 ~~~l~t~~~-dg~i~iw~~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~----l~~~~~dg~i~iw~~~~~ 87 (341)
+..+++++. ++.|.-+|. .+++.+.++...... ...+++.|.+.. ++.++.|+.+..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 446667777 889999999 899998887533211 123455444444 888889999999999999
Q ss_pred ceeeeecccCc----cEEE-EEEcCCCcEEEEec------CCCeEEEEEecCCCCcCeE---------------------
Q psy17863 88 QPVRRWREHAS----KVTC-VKFNEDSSVVISGS------QDNTVMMWDVKSRSHHPIQ--------------------- 135 (341)
Q Consensus 88 ~~~~~~~~~~~----~v~~-~~~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~--------------------- 135 (341)
+.+........ .+.+ .... ++ .++.++ .++.|..+|.++++..-..
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 219 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence 98876543210 1111 1111 34 455554 3789999998887621000
Q ss_pred --------------------------EeecCCCceEEEeecc----------------CeEEEEEccCCcceeeeEeeec
Q psy17863 136 --------------------------CCLDSKDSQIFCGSSD----------------GKIYKWQLVDSSQISTLIHSVG 173 (341)
Q Consensus 136 --------------------------~~~~~~~~~~~~~~~~----------------g~i~~~d~~~~~~~~~~~~~~~ 173 (341)
.......+.++.++.+ +.|..+|.++++....+....+
T Consensus 220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~ 299 (599)
T 1w6s_A 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (599)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence 0112344566666654 4899999999988877665432
Q ss_pred Cc-------eEEEEEEC-CCC---ceEEEe-CCCceEEEEccccc--------------------CCCCe----------
Q psy17863 174 KA-------VVNSLCSH-PTR---KHIMSA-CGNNVKLWTAEEDY--------------------GQEPI---------- 211 (341)
Q Consensus 174 ~~-------~~~~~~~~-~~~---~~~~~~-~~~~i~~~~~~~~~--------------------~~~~i---------- 211 (341)
.. ...-+... .++ +.++.+ .++.+.++|..+.. ...++
T Consensus 300 d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~ 379 (599)
T 1w6s_A 300 DEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMD 379 (599)
T ss_dssp CSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTT
T ss_pred ccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCC
Confidence 10 11111111 345 334433 34666666654422 00111
Q ss_pred ----------------EEEEEccCCCEEEEee---------------------------------------cCCeEEEEe
Q psy17863 212 ----------------VDACFTRDCQCILTCS---------------------------------------TDECLRLFD 236 (341)
Q Consensus 212 ----------------~~~~~~~~~~~l~~~~---------------------------------------~d~~i~i~d 236 (341)
..++++|+..++++.. ..|.|..||
T Consensus 380 ~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D 459 (599)
T 1w6s_A 380 HLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYN 459 (599)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEEC
T ss_pred CCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEE
Confidence 2356666655554421 347899999
Q ss_pred ccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEE
Q psy17863 237 KATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHI 311 (341)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 311 (341)
+.+++.+.+.+... +...- .+...+.+++.++.||.++.||.++|+.+.++... ......-+.+..+|+..
T Consensus 460 ~~tG~~~W~~~~~~-~~~~g--~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~-~g~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 460 AITGDYKWEKMERF-AVWGG--TMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP-SGAIGYPMTYTHKGTQY 530 (599)
T ss_dssp TTTCCEEEEEEESS-CCCSB--CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-SCCCSCCEEEEETTEEE
T ss_pred CCCCCEEeEecCCC-CccCc--ceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC-CCcEeccEEEEeCCEEE
Confidence 99998876664211 11110 12234668888999999999999999999888731 11112234556677643
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=4.1e-09 Score=93.72 Aligned_cols=261 Identities=8% Similarity=0.073 Sum_probs=148.0
Q ss_pred CCEEEEEeCCCeEEEEcCCCcceeeEecCcc----cceeE-EEEecCCCEEEEecC------CCcEEEEECCCCceeeee
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHA----HEVND-ATAACDSSQIASGAS------DKSVILWEVTTGQPVRRW 93 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~ 93 (341)
+..++.++.|+.|..+|..+|+.+.++.... ..+.+ .... ++ .++++.. +|.|..+|.++|+.+..+
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 4567888889999999999999988876421 11111 1111 34 5555543 589999999999988776
Q ss_pred cccC-------------------------------ccEEEEEEcCCCcEEEEecCCCe-------------------EEE
Q psy17863 94 REHA-------------------------------SKVTCVKFNEDSSVVISGSQDNT-------------------VMM 123 (341)
Q Consensus 94 ~~~~-------------------------------~~v~~~~~~~~~~~l~~~~~d~~-------------------i~i 123 (341)
.... .....+++.|+...++.+..++. |..
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A 274 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA 274 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 4210 01124678887788888877663 888
Q ss_pred EEecCCCCcCeE-----------------Eee-cCCC---ceEEEeeccCeEEEEEccCCcceeeeEeeecC--------
Q psy17863 124 WDVKSRSHHPIQ-----------------CCL-DSKD---SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK-------- 174 (341)
Q Consensus 124 wd~~~~~~~~~~-----------------~~~-~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-------- 174 (341)
+|.++++..-.. ... ...+ ..++.++.+|.++++|..+++.+.........
T Consensus 275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~ 354 (668)
T 1kv9_A 275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA 354 (668)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccc
Confidence 888776521111 000 0112 15888899999999999999887544321100
Q ss_pred --ceE------------------------EEEEECCCCceEEEeCCCceEEEEccccc-CC-CCeEEEEEccCCCEEE-E
Q psy17863 175 --AVV------------------------NSLCSHPTRKHIMSACGNNVKLWTAEEDY-GQ-EPIVDACFTRDCQCIL-T 225 (341)
Q Consensus 175 --~~~------------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~-~~i~~~~~~~~~~~l~-~ 225 (341)
.++ ..++++|+...+.+........+...... .. ..+ .+.....+...+ .
T Consensus 355 ~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~p~ 433 (668)
T 1kv9_A 355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAF-NTAAGFADATDVPA 433 (668)
T ss_dssp TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSC-CCSSCGGGCCCCCG
T ss_pred cCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccccccc-ccCccccccCCCCC
Confidence 000 00222333222222211111111110000 00 000 000000000011 2
Q ss_pred eecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 226 CSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 226 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
...+|.|..||+.+++.+.+...+.. .... .+...+.+++.++.||.++.||.++++.+..+.
T Consensus 434 ~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~~--~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 434 AVVSGALLAWDPVKQKAAWKVPYPTH-WNGG--TLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp GGCEEEEEEEETTTTEEEEEEEESSS-CCCC--EEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCccceEEEEeCCCCcEEEEccCCCC-CcCc--eeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence 22458899999999998777654322 2211 233457789999999999999999999998887
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.20 E-value=9e-09 Score=78.57 Aligned_cols=161 Identities=11% Similarity=0.079 Sum_probs=106.8
Q ss_pred ceeeeEEeeeCCc--EEEEEEccCCCEEEEEeCCC--eEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEe-cCCC
Q psy17863 3 YTCVQTIDCKQGA--IRAVRFNVDGSYCLTCGSDK--KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG-ASDK 77 (341)
Q Consensus 3 ~~~~~~l~~h~~~--v~~~~~~~~~~~l~t~~~dg--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg 77 (341)
++.++++. |... ...+.|+ ++.++.+.+.+| .|+++|+++++.+.++... .........++++.|... -.++
T Consensus 31 ~~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 31 YQIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred eEEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence 45667774 6543 4789998 677777777766 8999999999998888643 333333333345555544 4588
Q ss_pred cEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCe-------------EEeecCCCce
Q psy17863 78 SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPI-------------QCCLDSKDSQ 144 (341)
Q Consensus 78 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-------------~~~~~~~~~~ 144 (341)
.+.+||.++.+.+.++...... ..++ ++++.|+.+..++.|.++|..+.+.... ..+.... +.
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~eG-~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~-G~ 183 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGEG-WGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVD-GE 183 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSCC-CCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEET-TE
T ss_pred EEEEEECccCcEEEEEECCCCc-eEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEEC-CE
Confidence 9999999999999888753322 2333 5677777777688899999887552111 1122223 34
Q ss_pred EEEee-ccCeEEEEEccCCcceeeeEe
Q psy17863 145 IFCGS-SDGKIYKWQLVDSSQISTLIH 170 (341)
Q Consensus 145 ~~~~~-~~g~i~~~d~~~~~~~~~~~~ 170 (341)
+.+.. .++.|.+.|..+++....+..
T Consensus 184 lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 184 IFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp EEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred EEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 44444 577888888888887766654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-08 Score=89.57 Aligned_cols=269 Identities=8% Similarity=0.020 Sum_probs=144.8
Q ss_pred EEEEcc-CCCEEEEEeCCC-----------eEEEEcCCCccee--eEec-CcccceeEEEEecCCCEEEEecC-CCcEEE
Q psy17863 18 AVRFNV-DGSYCLTCGSDK-----------KIKLWNPYRNLLL--KTYG-GHAHEVNDATAACDSSQIASGAS-DKSVIL 81 (341)
Q Consensus 18 ~~~~~~-~~~~l~t~~~dg-----------~i~iw~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i 81 (341)
+.++.+ ++++++.|+.+. .+.+||+.+++.. ..+. .+.....++++..++++++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566777 888888887543 6889998876532 2222 12333445777889999999884 468999
Q ss_pred EECCCCceeeeecccC-ccEEEEEEcCCCcEEEEec-CC-----CeEEEEEecCCCCcCe--------E-----EeecCC
Q psy17863 82 WEVTTGQPVRRWREHA-SKVTCVKFNEDSSVVISGS-QD-----NTVMMWDVKSRSHHPI--------Q-----CCLDSK 141 (341)
Q Consensus 82 w~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~d-----~~i~iwd~~~~~~~~~--------~-----~~~~~~ 141 (341)
||..+++....-..+. ..-.+++..++++.++.|+ .+ ..+.+||..+..-..+ . ......
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 9998765433211111 1123455667899999988 34 5688999876542111 0 011122
Q ss_pred CceEEEeeccCe---------EEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeE
Q psy17863 142 DSQIFCGSSDGK---------IYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIV 212 (341)
Q Consensus 142 ~~~~~~~~~~g~---------i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 212 (341)
+...+.++.+|. +..||..+............ +.. .......-.
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~------------~~~---------------~~~~~~~~~ 402 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQS------------NRG---------------VAPDAMCGN 402 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEE------------TTE---------------ECCCCBTCE
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccc------------ccc---------------cCCCCCCCc
Confidence 333444544443 44555544332211110000 000 000001112
Q ss_pred EEEEc-cCCCEEEEeecCC-----------eEEEEeccccceeeee--cCcccceeEEEEEeCCCCCEEEEecCC-----
Q psy17863 213 DACFT-RDCQCILTCSTDE-----------CLRLFDKATGELLEEY--KGHKSGDFRIECCLDSKDSQIFCGSSD----- 273 (341)
Q Consensus 213 ~~~~~-~~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~d----- 273 (341)
++.+. .++++++.|+.++ .+.+||..+.+-.... ..+..... ...+..++++.++.|+.+
T Consensus 403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~-~~~~~l~~g~i~v~GG~~~~~~~ 481 (656)
T 1k3i_A 403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTF-HTSVVLPDGSTFITGGQRRGIPF 481 (656)
T ss_dssp EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBS-CEEEECTTSCEEEECCBSBCCTT
T ss_pred eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCccc-CCeEECCCCCEEEECCcccCcCc
Confidence 23332 3566677776432 6788887765433222 11222111 122566789999998854
Q ss_pred ------CcEEEEeeeCCCceEEEEee-eeccceEEEEEcCCCcEEEEeC
Q psy17863 274 ------GKIYKWQLVDSSQISTLIHS-VGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 274 ------g~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
..+.+||..+.+.. .+... ..........+.|++++++.|+
T Consensus 482 ~~~~~~~~v~~ydp~t~~W~-~~~~~~~~R~~hs~a~ll~dg~v~v~GG 529 (656)
T 1k3i_A 482 EDSTPVFTPEIYVPEQDTFY-KQNPNSIVRVYHSISLLLPDGRVFNGGG 529 (656)
T ss_dssp CCCSBCCCCEEEEGGGTEEE-ECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred CCCCcccceEEEcCCCCcee-ecCCCCCccccccHhhcCCCcEEEecCC
Confidence 46899998775432 22210 1122223455679999999988
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-08 Score=87.86 Aligned_cols=282 Identities=11% Similarity=0.057 Sum_probs=154.9
Q ss_pred CCEEEEEeCCCeEEEEcCCCcceeeEecCccc----ceeE-EEEecCCCEEEEecC------CCcEEEEECCCCceeeee
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH----EVND-ATAACDSSQIASGAS------DKSVILWEVTTGQPVRRW 93 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~ 93 (341)
+..++.++.|+.+..+|..+++.+.+...... .+.+ .... ++ .+++++. ++.|..+|.++|+.+.++
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 45777888899999999999998877653220 2221 1111 44 4555544 789999999999988766
Q ss_pred cccCcc-------------------------------------E-EEEEEcCCCcEEEEecCC----------------C
Q psy17863 94 REHASK-------------------------------------V-TCVKFNEDSSVVISGSQD----------------N 119 (341)
Q Consensus 94 ~~~~~~-------------------------------------v-~~~~~~~~~~~l~~~~~d----------------~ 119 (341)
...... + ..+++.++...++.+..+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 432110 0 124566655566655432 2
Q ss_pred eEEEEEecCCCCc------------------CeEEeecCCC---ceEEEeeccCeEEEEEccCCcceeeeEeeecC----
Q psy17863 120 TVMMWDVKSRSHH------------------PIQCCLDSKD---SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK---- 174 (341)
Q Consensus 120 ~i~iwd~~~~~~~------------------~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~---- 174 (341)
.|..+|.++++.. ++..-...++ ..++.++.+|.++++|..+++.+.........
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~ 352 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence 5777777765421 1110000122 24667888999999999998877665432100
Q ss_pred -------ceE--------------------------EEEEECCCCceEEEeCCC-ceEEEEcccccCCCCe-----EEEE
Q psy17863 175 -------AVV--------------------------NSLCSHPTRKHIMSACGN-NVKLWTAEEDYGQEPI-----VDAC 215 (341)
Q Consensus 175 -------~~~--------------------------~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~i-----~~~~ 215 (341)
.++ ..++++|+...+++.... ...++..........+ ..+.
T Consensus 353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 432 (571)
T 2ad6_A 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY 432 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence 011 123445554444444321 1111111111000000 0011
Q ss_pred EccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeee
Q psy17863 216 FTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG 295 (341)
Q Consensus 216 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 295 (341)
.+|.+. ....++.|..||+.+++.+.++.... .+... .+...+..++.++.||.++.+|.++++.+.++... .
T Consensus 433 ~~~~~~---~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~--~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~-~ 505 (571)
T 2ad6_A 433 PGPNGP---TKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGG--TLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMP-S 505 (571)
T ss_dssp ECTTST---TSCCCEEEEEECTTTCCEEEEEEESS-CCCSB--CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS-S
T ss_pred cCcccc---CCCCCCeEEEEECCCCCEEEEecCCC-Cccce--eEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCC-C
Confidence 111110 00246889999999999877765322 11111 12223567888999999999999999999988732 1
Q ss_pred ccceEEEEEcCCCcEEEEeC
Q psy17863 296 KAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 296 ~~~v~~~~~~~~~~~l~~~~ 315 (341)
...-.-+.+..+|+.++...
T Consensus 506 ~~~~~p~~~~~~G~~yv~~~ 525 (571)
T 2ad6_A 506 GGIGSPMTYSFKGKQYIGSM 525 (571)
T ss_dssp CCCSCCEEEEETTEEEEEEE
T ss_pred CcEeeeEEEEECCEEEEEEE
Confidence 11112233557777555443
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-08 Score=87.75 Aligned_cols=102 Identities=13% Similarity=0.113 Sum_probs=66.5
Q ss_pred CCEEEEEeC-CCeEEEEcC-CCcceeeEecCccc-ce----------eEEEEecCCCEEEEecCCCcEEEEECCCCceee
Q psy17863 25 GSYCLTCGS-DKKIKLWNP-YRNLLLKTYGGHAH-EV----------NDATAACDSSQIASGASDKSVILWEVTTGQPVR 91 (341)
Q Consensus 25 ~~~l~t~~~-dg~i~iw~~-~~~~~~~~~~~~~~-~v----------~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 91 (341)
+..++.++. ++.|.-+|. .+++.+.++..... .+ ..++. ++..+++++.|+.+..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 445666676 899999999 89998887753221 00 11233 35678888889999999999999887
Q ss_pred eecccC----ccEEE-EEEcCCCcEEEEecC------CCeEEEEEecCCC
Q psy17863 92 RWREHA----SKVTC-VKFNEDSSVVISGSQ------DNTVMMWDVKSRS 130 (341)
Q Consensus 92 ~~~~~~----~~v~~-~~~~~~~~~l~~~~~------d~~i~iwd~~~~~ 130 (341)
...... ..+.+ .... ++ .++.++. ++.|..+|.++++
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred EecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCc
Confidence 654321 01111 1111 34 4555544 7899999988876
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.6e-08 Score=75.24 Aligned_cols=192 Identities=9% Similarity=0.053 Sum_probs=119.5
Q ss_pred ceeeEecCcccc--eeEEEEecCCCEEEEecCCC--cEEEEECCCCceeeeecccCccE-EEEEEcCCCcEEEEecCCCe
Q psy17863 46 LLLKTYGGHAHE--VNDATAACDSSQIASGASDK--SVILWEVTTGQPVRRWREHASKV-TCVKFNEDSSVVISGSQDNT 120 (341)
Q Consensus 46 ~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~ 120 (341)
+.+.++. |... ...+.|+ ++.++.+.+.+| .|+++|+++++.+..+....... ..++.. ++.|+....
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw--- 104 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTW--- 104 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEES---
T ss_pred EEEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEe---
Confidence 4455664 4433 4778888 676666666665 89999999999888775432211 123332 223332221
Q ss_pred EEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEE
Q psy17863 121 VMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 200 (341)
Q Consensus 121 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 200 (341)
.++.+.++|..+.+.+..+.... .|
T Consensus 105 -----------------------------~~~~v~v~D~~t~~~~~ti~~~~------------eG-------------- 129 (262)
T 3nol_A 105 -----------------------------KNGLGFVWNIRNLRQVRSFNYDG------------EG-------------- 129 (262)
T ss_dssp -----------------------------SSSEEEEEETTTCCEEEEEECSS------------CC--------------
T ss_pred -----------------------------eCCEEEEEECccCcEEEEEECCC------------Cc--------------
Confidence 23455556665555555543321 10
Q ss_pred EcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcc--cc---eeEEEEEeCCCCCEEEEecCCCc
Q psy17863 201 TAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK--SG---DFRIECCLDSKDSQIFCGSSDGK 275 (341)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~l~~~~~dg~ 275 (341)
..++++++.|+.+..++.|.++|..+.+.+..+.... .+ +.-+ .+. +|+..+..-.++.
T Consensus 130 -------------~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNEL--e~~-~G~lyan~w~~~~ 193 (262)
T 3nol_A 130 -------------WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNEL--EWV-DGEIFANVWQTNK 193 (262)
T ss_dssp -------------CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEE--EEE-TTEEEEEETTSSE
T ss_pred -------------eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccccee--EEE-CCEEEEEEccCCe
Confidence 1233566667777667889999999988887776432 22 2224 333 6765555557889
Q ss_pred EEEEeeeCCCceEEEEeeee----------ccceEEEEEcCCCcEEEEeC
Q psy17863 276 IYKWQLVDSSQISTLIHSVG----------KAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~~~ 315 (341)
|.+.|..+++.+..+...+- ....+.++|+|+++.|...+
T Consensus 194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 99999999999988873211 23569999999877666665
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.3e-07 Score=74.12 Aligned_cols=255 Identities=9% Similarity=0.002 Sum_probs=135.7
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecC--------------------cccceeEEEEec-CCCEEEE
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG--------------------HAHEVNDATAAC-DSSQIAS 72 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~--------------------~~~~v~~~~~~~-~~~~l~~ 72 (341)
....++++.++|+++.++..++.|..|+..+++.. .+.. .......+++.+ +++ |++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence 45678999999987888888999999998765432 2210 113578899997 555 555
Q ss_pred ecCCCcEEEEECCCCceeeeecc-----cCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEE
Q psy17863 73 GASDKSVILWEVTTGQPVRRWRE-----HASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIF 146 (341)
Q Consensus 73 ~~~dg~i~iw~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 146 (341)
+...+.+..+|..+++. ..+.. .......+++.+ +|++.++-.... +... . .. ..++
T Consensus 97 ~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~----~~~~--~--~~--------~~~~ 159 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTL----YDDR--G--VQ--------QIMD 159 (322)
T ss_dssp EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSS----CCTT--C--HH--------HHHH
T ss_pred EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCccc----cccc--c--cc--------eehc
Confidence 54445588888765532 22211 112356677777 665444432210 0000 0 00 0000
Q ss_pred EeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEe
Q psy17863 147 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTC 226 (341)
Q Consensus 147 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 226 (341)
.+..++.+..+|..+++...... . . .....++++|+++.|+++
T Consensus 160 ~~~~~g~v~~~d~~~~~~~~~~~-~--~----------------------------------~~p~gia~~~dg~~lyv~ 202 (322)
T 2fp8_A 160 TSDKTGRLIKYDPSTKETTLLLK-E--L----------------------------------HVPGGAEVSADSSFVLVA 202 (322)
T ss_dssp HTCCCEEEEEEETTTTEEEEEEE-E--E----------------------------------SCCCEEEECTTSSEEEEE
T ss_pred ccCCCceEEEEeCCCCEEEEecc-C--C----------------------------------ccCcceEECCCCCEEEEE
Confidence 11223556666654433211110 0 0 112345667776654444
Q ss_pred -ecCCeEEEEeccccc--eeeeecCcccceeEEEEEeCCCCCEEEEecC----------CCcEEEEeeeCCCceEEEEee
Q psy17863 227 -STDECLRLFDKATGE--LLEEYKGHKSGDFRIECCLDSKDSQIFCGSS----------DGKIYKWQLVDSSQISTLIHS 293 (341)
Q Consensus 227 -~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~ 293 (341)
..++.|.+|++.... ....+..... ...+ +++++|++.++... .+.|..+|. +++.+..+...
T Consensus 203 d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi--~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~ 278 (322)
T 2fp8_A 203 EFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNI--KRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLP 278 (322)
T ss_dssp EGGGTEEEEEESSSTTTTCEEEEEECSS-EEEE--EECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECC
T ss_pred eCCCCeEEEEECCCCcCCccceEEeCCC-CCCe--EECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECC
Confidence 445678888766321 1111111111 3334 78899986666544 467888885 57777666521
Q ss_pred ee--ccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccC
Q psy17863 294 VG--KAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 294 ~~--~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~ 329 (341)
.. ...++.+++ .+++++++.. .+.|..+++....+
T Consensus 279 ~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~~ 316 (322)
T 2fp8_A 279 PPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKGN 316 (322)
T ss_dssp TTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-----
T ss_pred CCCccccceEEEE-eCCEEEEeecCCCceEEEecccccC
Confidence 11 235667776 4666666665 88999999875543
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.3e-08 Score=74.83 Aligned_cols=181 Identities=9% Similarity=0.081 Sum_probs=115.6
Q ss_pred eeeeEEeeeCCc--EEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEE-EecCCCcEE
Q psy17863 4 TCVQTIDCKQGA--IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKSVI 80 (341)
Q Consensus 4 ~~~~~l~~h~~~--v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~ 80 (341)
+.++++. |... ...+.|+ ++.++.+.+.+|.|+++|+++++.+..+ -..........++++.|. ..-.++.+.
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEEE
T ss_pred EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEEE
Confidence 4555663 5533 4788887 4667778888899999999999988887 223333322333444444 445689999
Q ss_pred EEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCe-------------EEeecCCCceEEE
Q psy17863 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPI-------------QCCLDSKDSQIFC 147 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-------------~~~~~~~~~~~~~ 147 (341)
+||.++.+.+.++..... -+.++ ++++.|+.+..++.|.++|.++.+.... ..+.... +.+.+
T Consensus 120 V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~d-G~lya 195 (268)
T 3nok_A 120 TWSGMPPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECAN-GVIYA 195 (268)
T ss_dssp EEETTTTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET-TEEEE
T ss_pred EEECCcCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeC-CEEEE
Confidence 999999999988875332 23444 4677777777789999999887652111 1112223 34544
Q ss_pred ee-ccCeEEEEEccCCcceeeeEeee-----------cCceEEEEEECCCCceEEEe
Q psy17863 148 GS-SDGKIYKWQLVDSSQISTLIHSV-----------GKAVVNSLCSHPTRKHIMSA 192 (341)
Q Consensus 148 ~~-~~g~i~~~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 192 (341)
.. .++.|.+.|..+++.+..+.... .....+.++++|+++.|+++
T Consensus 196 nvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT 252 (268)
T 3nok_A 196 NIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT 252 (268)
T ss_dssp EETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred EECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence 44 57788899988888777765431 11244556666555444443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-07 Score=82.78 Aligned_cols=279 Identities=13% Similarity=0.145 Sum_probs=153.0
Q ss_pred CCEEEEEeCCCeEEEEcCCCcceeeEecCccc----cee-EEEEecC---CC-EEEEec------CCCcEEEEECCCCce
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAH----EVN-DATAACD---SS-QIASGA------SDKSVILWEVTTGQP 89 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~----~v~-~~~~~~~---~~-~l~~~~------~dg~i~iw~~~~~~~ 89 (341)
+..++.++.|+.|.-+|..+|+.+.+.+.... .+. ......+ ++ .+++++ .++.|..+|.++|+.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45677888899999999999998877653321 111 1111212 22 566654 378999999999988
Q ss_pred eeeecccCccE-----------------------------------------EEEEEcCCCcEEEEecC-----------
Q psy17863 90 VRRWREHASKV-----------------------------------------TCVKFNEDSSVVISGSQ----------- 117 (341)
Q Consensus 90 ~~~~~~~~~~v-----------------------------------------~~~~~~~~~~~l~~~~~----------- 117 (341)
+.........+ ..+++.|+..+++.+..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 76553211000 12456666666665542
Q ss_pred ---------C----CeEEEEEecCCCCc------------------CeEEeec-CCC---ceEEEeeccCeEEEEEccCC
Q psy17863 118 ---------D----NTVMMWDVKSRSHH------------------PIQCCLD-SKD---SQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 118 ---------d----~~i~iwd~~~~~~~------------------~~~~~~~-~~~---~~~~~~~~~g~i~~~d~~~~ 162 (341)
| +.|..+|.++++.. ++..-.. .++ ..++.++.+|.++++|..++
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG 356 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence 2 57888887776521 1111110 122 36778899999999999999
Q ss_pred cceeeeEeeecCceEE-------------------------------------------EEEECCCCceEEEeCC-CceE
Q psy17863 163 SQISTLIHSVGKAVVN-------------------------------------------SLCSHPTRKHIMSACG-NNVK 198 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~-~~i~ 198 (341)
+.+............. .++++|+...+++... -.+.
T Consensus 357 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~ 436 (582)
T 1flg_A 357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKED 436 (582)
T ss_dssp CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEE
T ss_pred CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhccee
Confidence 8876654332100011 1223333222222211 1111
Q ss_pred EEEcccccCCC-Ce--EEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCc
Q psy17863 199 LWTAEEDYGQE-PI--VDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGK 275 (341)
Q Consensus 199 ~~~~~~~~~~~-~i--~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 275 (341)
++......... +. ..+...|.+ ...+|.|..||+.+++.+.+..... +...- .+...+.+++.|+.||.
T Consensus 437 ~~~~~~~~~~g~~~~g~~~~~~p~~-----~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g--~~~tagglvf~g~~dg~ 508 (582)
T 1flg_A 437 YWTEEVSYTKGSAYLGMGFRIKRMY-----DDHVGSLRAMDPVSGKVVWEHKEHL-PLWAG--VLATAGNLVFTGTGDGY 508 (582)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEESC-----SSCSEEEEEECTTTCCEEEEEEESS-CCCSC--CEEETTTEEEEECTTSE
T ss_pred eecccccccCCCceeccceeecCCC-----CCCcceEEEEECCCCCEEEEecCCC-CCccc--ceEeCCCEEEEECCCCc
Confidence 11111000000 00 001111110 1246889999999999876665332 11111 11223668888999999
Q ss_pred EEEEeeeCCCceEEEEeeeecc-ceEEEEEcCCCcEEEE
Q psy17863 276 IYKWQLVDSSQISTLIHSVGKA-VVNSLCSHPTRKHIMS 313 (341)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~ 313 (341)
++.||.++|+.+.++.. ... ...-+.|..+|+..++
T Consensus 509 l~A~D~~tG~~lW~~~~--~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 509 FKAFDAKSGKELWKFQT--GSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp EEEEETTTCCEEEEEEC--SSCCCSCCEEEEETTEEEEE
T ss_pred EEEEECCCCCEEEEecC--CCCcccCceEEEECCEEEEE
Confidence 99999999999999873 221 1122556678774433
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=8.4e-07 Score=69.59 Aligned_cols=213 Identities=8% Similarity=-0.040 Sum_probs=124.5
Q ss_pred CcEEEEEEccCCCEEEEE-eCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEE-EecCCCcEEEEECCCCceee
Q psy17863 14 GAIRAVRFNVDGSYCLTC-GSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKSVILWEVTTGQPVR 91 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~ 91 (341)
..+..++|+++++.|..+ ..++.|..++.........+.........+++++++..|+ +-...+.|.+++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 456789999976555544 4578999999876554333333335678999999765555 44557889999986433222
Q ss_pred eecccCccEEEEEEcCCCcEEEEecC---CCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeee
Q psy17863 92 RWREHASKVTCVKFNEDSSVVISGSQ---DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 168 (341)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 168 (341)
...........++++|++..|+.+.. .+.|..+++..... ..+
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~----------------------------------~~~ 161 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR----------------------------------RIL 161 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC----------------------------------EEE
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc----------------------------------EEE
Confidence 22222245688999996555554443 24555555442210 000
Q ss_pred EeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEEEEecccc
Q psy17863 169 IHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240 (341)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 240 (341)
. .........++++|++..+..+. .+.|..++..... .......++.. ++..+++....+.|..+|..++
T Consensus 162 ~-~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 162 A-QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAIS 239 (267)
T ss_dssp E-CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTT
T ss_pred E-ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCC
Confidence 0 00123467788888766555444 3677777765432 11223455544 3444444445689999999988
Q ss_pred ceeeeecCccc-ceeEEEEEeCCCC
Q psy17863 241 ELLEEYKGHKS-GDFRIECCLDSKD 264 (341)
Q Consensus 241 ~~~~~~~~~~~-~~~~~~~~~~~~~ 264 (341)
+.+..+..... ....+ ++.|++
T Consensus 240 ~~~~~i~~g~~~~p~gi--~~~~~~ 262 (267)
T 1npe_A 240 KEMDTFHPHKQTRLYGI--TIALSQ 262 (267)
T ss_dssp EEEEEECCSSCCCCCCE--EEECSC
T ss_pred CceEEEcccccccccee--eecCcc
Confidence 88887754321 23344 455554
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.2e-07 Score=71.79 Aligned_cols=162 Identities=9% Similarity=0.045 Sum_probs=106.3
Q ss_pred CceeeeEEeeeCC--cEEEEEEccCCCEEEEEeCC--CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEE-EEecCC
Q psy17863 2 EYTCVQTIDCKQG--AIRAVRFNVDGSYCLTCGSD--KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQI-ASGASD 76 (341)
Q Consensus 2 ~~~~~~~l~~h~~--~v~~~~~~~~~~~l~t~~~d--g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d 76 (341)
.++.++++ .|.. -...+.|++ +.++.+.+.+ ..|+.+|+.+++.+.++.... ........+.++.| ...-.+
T Consensus 8 ~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~ 84 (243)
T 3mbr_X 8 GYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRN 84 (243)
T ss_dssp CEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSS
T ss_pred ceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeC
Confidence 45677777 4764 466899987 5566666665 489999999999988876333 22222222334444 444568
Q ss_pred CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeE-------------EeecCCCc
Q psy17863 77 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ-------------CCLDSKDS 143 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------------~~~~~~~~ 143 (341)
+.+.+||..+.+.+.+++..... ..++ ++++.|+.+..++.|.++|..+.+..... .+... ++
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G 160 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NG 160 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred CEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CC
Confidence 99999999999999988754332 3444 45666777677899999998876521111 11112 33
Q ss_pred eEEEee-ccCeEEEEEccCCcceeeeEe
Q psy17863 144 QIFCGS-SDGKIYKWQLVDSSQISTLIH 170 (341)
Q Consensus 144 ~~~~~~-~~g~i~~~d~~~~~~~~~~~~ 170 (341)
.+.+.. .+..|.+.|..+++....+..
T Consensus 161 ~lyanvw~s~~I~vIDp~tG~V~~~idl 188 (243)
T 3mbr_X 161 ELLANVWLTSRIARIDPASGKVVAWIDL 188 (243)
T ss_dssp EEEEEETTTTEEEEECTTTCBEEEEEEC
T ss_pred EEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 444444 577888888888887766653
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.03 E-value=9.9e-08 Score=72.87 Aligned_cols=190 Identities=10% Similarity=0.070 Sum_probs=117.4
Q ss_pred ceeeEecCcccc--eeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccE--EEEEEcCCCcEEEEecCCCeE
Q psy17863 46 LLLKTYGGHAHE--VNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKV--TCVKFNEDSSVVISGSQDNTV 121 (341)
Q Consensus 46 ~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d~~i 121 (341)
+.+.++. |... ...+.|+ ++.+..+.+.+|.|+++|+++++.+..+ -.. .. ..+++. ++.|+...
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~--g~~Ly~lt----- 112 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASD--GERLYQLT----- 112 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEEC--SSCEEEEE-----
T ss_pred EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEe--CCEEEEEE-----
Confidence 4455554 4433 3678887 4666777788889999999999988776 222 22 223333 22222221
Q ss_pred EEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEE
Q psy17863 122 MMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWT 201 (341)
Q Consensus 122 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 201 (341)
-.++.+.+||..+.+.+.++... +.+
T Consensus 113 ---------------------------w~~~~v~V~D~~Tl~~~~ti~~~------------~eG--------------- 138 (268)
T 3nok_A 113 ---------------------------WTEGLLFTWSGMPPQRERTTRYS------------GEG--------------- 138 (268)
T ss_dssp ---------------------------SSSCEEEEEETTTTEEEEEEECS------------SCC---------------
T ss_pred ---------------------------ccCCEEEEEECCcCcEEEEEeCC------------Cce---------------
Confidence 12345556666665555554321 111
Q ss_pred cccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcc--cc---eeEEEEEeCCCCCEEEEecCCCcE
Q psy17863 202 AEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK--SG---DFRIECCLDSKDSQIFCGSSDGKI 276 (341)
Q Consensus 202 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~l~~~~~dg~i 276 (341)
..++++++.|+.+..++.|.++|..+.+.+..+.... .+ ..-+ .+. +|+..+....+..|
T Consensus 139 ------------wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeL--e~~-dG~lyanvw~s~~I 203 (268)
T 3nok_A 139 ------------WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINEL--ECA-NGVIYANIWHSSDV 203 (268)
T ss_dssp ------------CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE--EEE-TTEEEEEETTCSEE
T ss_pred ------------eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccccc--EEe-CCEEEEEECCCCeE
Confidence 1233556777777778899999999998887776432 12 2233 333 67655555568899
Q ss_pred EEEeeeCCCceEEEEeee-----------eccceEEEEEcCCCcEEEEeC
Q psy17863 277 YKWQLVDSSQISTLIHSV-----------GKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 277 ~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~ 315 (341)
.+.|..+++.+..+...+ .....+.++++|+++.|...+
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 999999999998887321 123679999999765554443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-07 Score=81.44 Aligned_cols=260 Identities=10% Similarity=0.064 Sum_probs=153.5
Q ss_pred CCEEEEecC-CCcEEEEEC-CCCceeeeecccCcc-----------EEEEEEcCCCcE----EEEecCCCeEEEEEecCC
Q psy17863 67 SSQIASGAS-DKSVILWEV-TTGQPVRRWREHASK-----------VTCVKFNEDSSV----VISGSQDNTVMMWDVKSR 129 (341)
Q Consensus 67 ~~~l~~~~~-dg~i~iw~~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~~~----l~~~~~d~~i~iwd~~~~ 129 (341)
+..|++++. ++.|..+|. .+|+.+.++...... ...+++.|.+.. ++.++.|+.+..+|.+++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456666676 889999999 899988776532210 123455433333 788888999999998877
Q ss_pred CCcCeEE------------eecCCCceEEEeec------cCeEEEEEccCCcceeeeEeeecCc----------------
Q psy17863 130 SHHPIQC------------CLDSKDSQIFCGSS------DGKIYKWQLVDSSQISTLIHSVGKA---------------- 175 (341)
Q Consensus 130 ~~~~~~~------------~~~~~~~~~~~~~~------~g~i~~~d~~~~~~~~~~~~~~~~~---------------- 175 (341)
+..-... .....++.+++++. +|.|+.+|.++++.+..+.......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred CEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 6311110 00112456777663 7999999999999887665332110
Q ss_pred --------------------eEEEEEECCCCceEEEeCCC-----------------ceEEEEccccc---------CC-
Q psy17863 176 --------------------VVNSLCSHPTRKHIMSACGN-----------------NVKLWTAEEDY---------GQ- 208 (341)
Q Consensus 176 --------------------~~~~~~~~~~~~~~~~~~~~-----------------~i~~~~~~~~~---------~~- 208 (341)
.-..+++.+....++.+..+ .+..+|.++.. +.
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 00123444555555554432 45555554332 21
Q ss_pred -------CCeEEEEEc-cCC---CEEEEeecCCeEEEEeccccceeeeecCcc-------------ccee----------
Q psy17863 209 -------EPIVDACFT-RDC---QCILTCSTDECLRLFDKATGELLEEYKGHK-------------SGDF---------- 254 (341)
Q Consensus 209 -------~~i~~~~~~-~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------~~~~---------- 254 (341)
.++. +... .+| +.++.++.+|.++++|.++|+.+....... .++.
T Consensus 302 wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~ 380 (599)
T 1w6s_A 302 WDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDH 380 (599)
T ss_dssp SCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTC
T ss_pred ccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCC
Confidence 1121 2222 567 567778999999999999998876554211 0000
Q ss_pred ---E-----------EEEEeCCCCCEEEEe---------------------------------c------CCCcEEEEee
Q psy17863 255 ---R-----------IECCLDSKDSQIFCG---------------------------------S------SDGKIYKWQL 281 (341)
Q Consensus 255 ---~-----------~~~~~~~~~~~l~~~---------------------------------~------~dg~i~iwd~ 281 (341)
. -..+++|+.+++++. + .+|.|.-||+
T Consensus 381 ~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~ 460 (599)
T 1w6s_A 381 LAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNA 460 (599)
T ss_dssp CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECT
T ss_pred CccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEEC
Confidence 0 012455555544332 1 4578999999
Q ss_pred eCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 282 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 282 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
.+++.+.+... ..+...-.....+.+++.++ |+.++.||.+++...
T Consensus 461 ~tG~~~W~~~~---~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l 507 (599)
T 1w6s_A 461 ITGDYKWEKME---RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL 507 (599)
T ss_dssp TTCCEEEEEEE---SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCCCEEeEecC---CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence 99998887762 12222111223456666788 999999998876543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=6.6e-07 Score=78.11 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=64.2
Q ss_pred CEEEEEeCCCeEEEEcCCCcceeeEecCcccce---------eEEEEecCCCEEEEecCCCcEEEEECCCCceeeeeccc
Q psy17863 26 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEV---------NDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREH 96 (341)
Q Consensus 26 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 96 (341)
..++.++.++.|.-+|..+|+.+.++....... ..++. .+..++.++.|+.|..+|..+|+.+......
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 345555554459999999999988876432210 11222 3557888888999999999999988766432
Q ss_pred Cc----cEE-EEEEcC---CCc-EEEEec------CCCeEEEEEecCCC
Q psy17863 97 AS----KVT-CVKFNE---DSS-VVISGS------QDNTVMMWDVKSRS 130 (341)
Q Consensus 97 ~~----~v~-~~~~~~---~~~-~l~~~~------~d~~i~iwd~~~~~ 130 (341)
.. .+. ...... +++ .++.++ .++.|..+|.++++
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~ 195 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence 21 111 011111 222 555554 37889999988776
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=99.00 E-value=4.6e-06 Score=66.80 Aligned_cols=121 Identities=12% Similarity=0.073 Sum_probs=76.2
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCC--cEEEE
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDK--SVILW 82 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iw 82 (341)
.+..+... .....++|+++|+++++-..++.|..||... +....+. .......+++.++++++++..... .|..+
T Consensus 24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSL 100 (306)
T ss_dssp EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred EeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEE
Confidence 34444322 5678999999999777766789999999765 3333333 335688999999998666554322 46667
Q ss_pred ECCCCceeeeecc-cCccEEEEEEcCCCcEEEEecCCCeEEEEEecC
Q psy17863 83 EVTTGQPVRRWRE-HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS 128 (341)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 128 (341)
+..+++....... .......++..+++..+++-..++.|..+|...
T Consensus 101 d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~ 147 (306)
T 2p4o_A 101 VKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ 147 (306)
T ss_dssp ECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred cCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCC
Confidence 7777765332221 122234555555555555555678888887654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.6e-07 Score=68.59 Aligned_cols=192 Identities=11% Similarity=0.041 Sum_probs=116.8
Q ss_pred ceeeEecCccc--ceeEEEEecCCCEEEEecCC--CcEEEEECCCCceeeeecccCccE-EEEEEcCCCcEEEEecCCCe
Q psy17863 46 LLLKTYGGHAH--EVNDATAACDSSQIASGASD--KSVILWEVTTGQPVRRWREHASKV-TCVKFNEDSSVVISGSQDNT 120 (341)
Q Consensus 46 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~ 120 (341)
+.+.++. |.. -...+.|++ +.++.+.+.+ ..|+.+|+++++.+.......... ..+++. ++.|+...
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~lt---- 81 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLT---- 81 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEE----
T ss_pred EEEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEE----
Confidence 4555664 543 356888885 5555665654 489999999999988775332211 122322 22222221
Q ss_pred EEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEE
Q psy17863 121 VMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 200 (341)
Q Consensus 121 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 200 (341)
-.++.+.++|..+.+.+.++..... |
T Consensus 82 ----------------------------w~~~~v~v~D~~tl~~~~ti~~~~~------------G-------------- 107 (243)
T 3mbr_X 82 ----------------------------WRNHEGFVYDLATLTPRARFRYPGE------------G-------------- 107 (243)
T ss_dssp ----------------------------SSSSEEEEEETTTTEEEEEEECSSC------------C--------------
T ss_pred ----------------------------eeCCEEEEEECCcCcEEEEEeCCCC------------c--------------
Confidence 1234566666666655555543210 0
Q ss_pred EcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCccc-----ceeEEEEEeCCCCCEEEEecCCCc
Q psy17863 201 TAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKS-----GDFRIECCLDSKDSQIFCGSSDGK 275 (341)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~dg~ 275 (341)
..+.+++..|+.+..++.|.++|..+.+.+..+..... .+.-+. +. +|+..+..-.+..
T Consensus 108 -------------wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe--~~-~G~lyanvw~s~~ 171 (243)
T 3mbr_X 108 -------------WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE--WV-NGELLANVWLTSR 171 (243)
T ss_dssp -------------CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE--EE-TTEEEEEETTTTE
T ss_pred -------------eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE--Ee-CCEEEEEECCCCe
Confidence 12334566666666788999999999888877764321 222332 22 5665555556789
Q ss_pred EEEEeeeCCCceEEEEeee-----------eccceEEEEEcCCCcEEEEeC
Q psy17863 276 IYKWQLVDSSQISTLIHSV-----------GKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 276 i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~ 315 (341)
|.+.|..+++.+..+...+ .....+.++++|+++.|...+
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 9999999999998887321 124679999999876655554
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.90 E-value=8.4e-06 Score=65.28 Aligned_cols=228 Identities=8% Similarity=0.027 Sum_probs=123.2
Q ss_pred cceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCC--eEE
Q psy17863 45 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN--TVM 122 (341)
Q Consensus 45 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~ 122 (341)
.+.+..+... .....++|+++++++++-..++.|..||... +....+. .......+++.++++++++..... .|.
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVV 98 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEE
Confidence 3445555432 4567899999998777776789999999764 3333333 345688999999998665543322 355
Q ss_pred EEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEE
Q psy17863 123 MWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWT 201 (341)
Q Consensus 123 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~ 201 (341)
.++..+++...+.. .+.. .....++..+++..+++.. .+.+..++
T Consensus 99 ~~d~~~g~~~~~~~---~~~~-------------------------------~~~~g~~~~~~~~~~v~d~~~g~i~~~d 144 (306)
T 2p4o_A 99 SLVKSDGTVETLLT---LPDA-------------------------------IFLNGITPLSDTQYLTADSYRGAIWLID 144 (306)
T ss_dssp EEECTTSCEEEEEE---CTTC-------------------------------SCEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred EEcCCCCeEEEEEe---CCCc-------------------------------cccCcccccCCCcEEEEECCCCeEEEEe
Confidence 55554443111100 0000 0011122222222222221 23333333
Q ss_pred cccc--------------c---CCCCeEEEEEccCCCEEEEe-ecCCeEEEEeccc-cce--eeeecCcccceeEEEEEe
Q psy17863 202 AEED--------------Y---GQEPIVDACFTRDCQCILTC-STDECLRLFDKAT-GEL--LEEYKGHKSGDFRIECCL 260 (341)
Q Consensus 202 ~~~~--------------~---~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~ 260 (341)
.... . .......+ +|+++.|+++ ...+.|..|++.. ++. ...+... .....+ ++
T Consensus 145 ~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-~~P~gi--~v 219 (306)
T 2p4o_A 145 VVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-TNIDDF--AF 219 (306)
T ss_dssp TTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-CCCSSE--EE
T ss_pred CCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-CCCCCe--EE
Confidence 3210 0 11123344 7888766544 4567899999864 321 1111111 112234 78
Q ss_pred CCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEc---CCCcEEEEeC
Q psy17863 261 DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH---PTRKHIMSAC 315 (341)
Q Consensus 261 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~ 315 (341)
+++|++.++....+.|.+++. .++..............++++|. |+++.|..++
T Consensus 220 d~dG~l~va~~~~~~V~~~~~-~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 220 DVEGNLYGATHIYNSVVRIAP-DRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp BTTCCEEEECBTTCCEEEECT-TCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred CCCCCEEEEeCCCCeEEEECC-CCCEEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence 899988777777889999995 46543221111223568999998 8877666655
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.1e-06 Score=77.59 Aligned_cols=100 Identities=9% Similarity=-0.025 Sum_probs=68.4
Q ss_pred cEEEEEEc-cCCCEEEEEeC-C----CeEEEEcCCCc-ceeeEecCcccceeEEEEecCCCEEEEecCC-----CcEEEE
Q psy17863 15 AIRAVRFN-VDGSYCLTCGS-D----KKIKLWNPYRN-LLLKTYGGHAHEVNDATAACDSSQIASGASD-----KSVILW 82 (341)
Q Consensus 15 ~v~~~~~~-~~~~~l~t~~~-d----g~i~iw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw 82 (341)
.+...+|| |||++||.+.. + ..|+++|+.++ +.+.. .-......++|+||++.|+....+ ..|.++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 67889999 99998885543 2 35999999988 63221 011224578999999888876654 358888
Q ss_pred ECCCCcee--eeec-ccCccEEEEEEcCCCcEEEEec
Q psy17863 83 EVTTGQPV--RRWR-EHASKVTCVKFNEDSSVVISGS 116 (341)
Q Consensus 83 ~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~ 116 (341)
++.+++.. ..+. ........+.|+||+++|+...
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~ 289 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGS 289 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEE
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEe
Confidence 88776432 2222 2234466789999999888765
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.76 E-value=0.00014 Score=68.40 Aligned_cols=302 Identities=16% Similarity=0.147 Sum_probs=165.2
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCccee--eEecCcccceeEEEEecC------CCEEEEecC-CCcEEEEECC
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLL--KTYGGHAHEVNDATAACD------SSQIASGAS-DKSVILWEVT 85 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~--~~~~~~~~~v~~~~~~~~------~~~l~~~~~-dg~i~iw~~~ 85 (341)
.|...+.+ +++++.+. .+.+.++.+.+++.. ... .-...|.|+++.|. ++++++|.. |++++|+++.
T Consensus 515 ~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~-~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~ 590 (1158)
T 3ei3_A 515 NISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP 590 (1158)
T ss_dssp CCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEE-ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT
T ss_pred EEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeeccc-CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC
Confidence 34444433 23555554 577878776654322 222 23567999999763 368999986 9999999998
Q ss_pred CCceeeeecc-cCccEEEEEEc--CCCcEEEEecCCCeEEEEEecC--CCC----------cCeEE--eecCCCceEEEe
Q psy17863 86 TGQPVRRWRE-HASKVTCVKFN--EDSSVVISGSQDNTVMMWDVKS--RSH----------HPIQC--CLDSKDSQIFCG 148 (341)
Q Consensus 86 ~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~--~~~----------~~~~~--~~~~~~~~~~~~ 148 (341)
+.+.+....- ......++.+. ....+|..|-.||.+..+.+.. +.. .++.. +.......+++.
T Consensus 591 ~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~ 670 (1158)
T 3ei3_A 591 SFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFAC 670 (1158)
T ss_dssp TCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEE
T ss_pred CCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEE
Confidence 7665543221 11233344333 2456788999999987766543 211 11111 111222233333
Q ss_pred eccCeEEEEEccCCcceeeeEeeecCceE-EEEEECCC--CceEEEeCCCceEEEEccccc--------CCCCeEEEEEc
Q psy17863 149 SSDGKIYKWQLVDSSQISTLIHSVGKAVV-NSLCSHPT--RKHIMSACGNNVKLWTAEEDY--------GQEPIVDACFT 217 (341)
Q Consensus 149 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~--------~~~~i~~~~~~ 217 (341)
+ +....++..+. + +. +. ......+ ....|+.. ..-++...++.+++..++... -...+..++++
T Consensus 671 s-~rp~liy~~~~-~-l~-~s-~l~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~ 745 (1158)
T 3ei3_A 671 S-DRPTVIYSSNH-K-LV-FS-NVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQ 745 (1158)
T ss_dssp S-SSCEEEEESSS-S-EE-EE-EBSSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEE
T ss_pred C-CCCEEEEEcCC-c-eE-Ee-ccChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEeCCCCceEEEEc
Confidence 3 33333333222 1 11 11 1111112 22223322 344556666778887764322 34567788888
Q ss_pred cCCCEEEEeecC-------------------------------------------------CeEEEEeccccceeeeecC
Q psy17863 218 RDCQCILTCSTD-------------------------------------------------ECLRLFDKATGELLEEYKG 248 (341)
Q Consensus 218 ~~~~~l~~~~~d-------------------------------------------------~~i~i~d~~~~~~~~~~~~ 248 (341)
|+.+.++++..+ +.|++.|..+.+.+..++-
T Consensus 746 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l 825 (1158)
T 3ei3_A 746 EVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQF 825 (1158)
T ss_dssp GGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEEC
T ss_pred CCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeC
Confidence 877765543311 2366777666666554432
Q ss_pred cc-cceeEEEE-EeCCC-CCEEEEec----------CCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC
Q psy17863 249 HK-SGDFRIEC-CLDSK-DSQIFCGS----------SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 249 ~~-~~~~~~~~-~~~~~-~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
.. ..+.++.. .+..+ ..+++.|+ ..|.|++|++.++ .+..+.....+++|++++-- +|+ |+++-
T Consensus 826 ~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~-kL~lv~~~~v~g~v~al~~~-~g~-Lla~i 902 (1158)
T 3ei3_A 826 LQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG-KLQTVAEKEVKGAVYSMVEF-NGK-LLASI 902 (1158)
T ss_dssp CTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT-EEEEEEEEEESSCEEEEEEE-TTE-EEEEE
T ss_pred CCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECC-EEEEEEEEEcCCcCEEEeee-CCE-EEEEc
Confidence 22 22333332 23322 46788775 3588999999854 33333333557889998744 354 44444
Q ss_pred CCcEEEEEccccc
Q psy17863 316 GNNVKLWTAEEDY 328 (341)
Q Consensus 316 d~~i~vw~~~~~~ 328 (341)
..+|++|++..+.
T Consensus 903 g~~l~vy~l~~~~ 915 (1158)
T 3ei3_A 903 NSTVRLYEWTTEK 915 (1158)
T ss_dssp TTEEEEEEECTTS
T ss_pred CCEEEEEECCCCc
Confidence 7899999998654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.4e-05 Score=60.15 Aligned_cols=119 Identities=11% Similarity=0.149 Sum_probs=84.6
Q ss_pred EEeeeCCcEEEEEEccCCCEEE-EEeCCCeEEEEcCCCcceeeEecC-cccceeEEEEecCCCEEEEecCCCcEEEEECC
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGG-HAHEVNDATAACDSSQIASGASDKSVILWEVT 85 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 85 (341)
.+.+-.+.+..++|+|+++.|+ +...++.|...|.. ++.++.+.- .......+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3445557899999999866554 56778899999987 887777642 22567788888888877776667889999876
Q ss_pred CCcee---eeec------ccCccEEEEEEcCCCcEEEEecCCCeEEEEEec
Q psy17863 86 TGQPV---RRWR------EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 127 (341)
Q Consensus 86 ~~~~~---~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 127 (341)
....+ .... ..+.....++|+|.++.|+++.......+|.+.
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 54421 2221 234557899999998888887776666676665
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.1e-05 Score=65.06 Aligned_cols=110 Identities=6% Similarity=0.098 Sum_probs=65.4
Q ss_pred cEEEEEEcc-CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC-CC----cEEEEECCCCc
Q psy17863 15 AIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS-DK----SVILWEVTTGQ 88 (341)
Q Consensus 15 ~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~iw~~~~~~ 88 (341)
....|+++| ++..|..+...+.|+.+|+.++....... .......++|++++++|+++.. ++ .+...+ ..+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCc
Confidence 457899998 45556665555889999987765443333 4556789999999996666554 22 233333 3332
Q ss_pred ee--eeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEec
Q psy17863 89 PV--RRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVK 127 (341)
Q Consensus 89 ~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 127 (341)
.. ..+.. ......++++| ++.++++-..++.|..++..
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~ 256 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFT 256 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETT
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 22 22221 22345677787 56555555555666666654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.74 E-value=5.3e-05 Score=61.76 Aligned_cols=238 Identities=6% Similarity=-0.067 Sum_probs=134.8
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEe-cCCCcEEEEECCCCceee
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG-ASDKSVILWEVTTGQPVR 91 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~ 91 (341)
.+..+|.+..+++ +|+.+. ...|+..++........+. .......++|++.+..|+.+ ...+.|..+++..+....
T Consensus 33 ~d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 109 (349)
T 3v64_C 33 PDRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 109 (349)
T ss_dssp TTSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CCCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE
Confidence 3445666666643 444433 4568888876655443343 33457899999866555544 567889999987665433
Q ss_pred eecccCccEEEEEEcCC-CcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEe
Q psy17863 92 RWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH 170 (341)
Q Consensus 92 ~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~ 170 (341)
.+.........+++.+. +.+.++-...+.|.+.++...... .+ .
T Consensus 110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~----------------------------------~l-~ 154 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK----------------------------------VL-L 154 (349)
T ss_dssp EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE----------------------------------EE-E
T ss_pred EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE----------------------------------EE-E
Confidence 33322334567888864 444455555567777666532210 00 0
Q ss_pred eecCceEEEEEECCCCceEEEeCC---CceEEEEccccc-------CCCCeEEEEEccCCCEEEEe-ecCCeEEEEeccc
Q psy17863 171 SVGKAVVNSLCSHPTRKHIMSACG---NNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTC-STDECLRLFDKAT 239 (341)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~ 239 (341)
.........++++|.+..+..+.. +.|..++++... .......++++|++..|+.+ ...+.|..+|+..
T Consensus 155 ~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 155 WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 011223567777775555544432 345555554322 22346789999866655544 4567899999764
Q ss_pred cceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 240 GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
......+.........+ ++ .++...++-...+.|..++..+++....+.
T Consensus 235 ~~~~~~~~~~~~~P~gi--av-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 235 SHRKAVISQGLPHPFAI--TV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp CSCEEEECSSCSSEEEE--EE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CceEEEEeCCCCCceEE--EE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 33222222222233445 44 345566666677888888866777666655
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.5e-05 Score=61.12 Aligned_cols=265 Identities=9% Similarity=0.034 Sum_probs=141.3
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec----CcccceeEEEEecCCCEEEEecCCCcEEEEECCCCc
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG----GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 88 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 88 (341)
...+.++.|.+++..+++ +.+|.|... ...++.-.... .....+..+.+.+ +..++ ++..+.|.. ..+.|+
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i~~s-~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATLMET-RDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEEEEE-SSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeEEEe-CCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence 457999999888877775 557765333 23333222221 1244688999986 44444 455564433 333343
Q ss_pred eeeeec---ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcce
Q psy17863 89 PVRRWR---EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 89 ~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
.-.... .+...+..+.+.+++..++.+. +|.| |....+ ++.-
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v--~~S~Dg--------------------------------G~tW 154 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAI--YRTKDS--------------------------------GKNW 154 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCE--EEESST--------------------------------TSSE
T ss_pred CceECccccCCCCCeEEEEEECCCCEEEEeC-CccE--EEEcCC--------------------------------CCCC
Confidence 322221 2334566777666665555443 3432 111110 0000
Q ss_pred eeeEeeecCceEEEEEECCCCceEEEeCCCceEEEE-c-------ccccCCCCeEEEEEccCCCEEEEeecCCeEEEEec
Q psy17863 166 STLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWT-A-------EEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDK 237 (341)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~-------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~ 237 (341)
.... ......+..+.+.+++.+++.+..+.+..-. - ........+..+.+.++++.+ +.+.+|.+++.+.
T Consensus 155 ~~~~-~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~ 232 (327)
T 2xbg_A 155 QALV-QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDP 232 (327)
T ss_dssp EEEE-CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEET
T ss_pred EEee-cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecC
Confidence 0110 0112246677888888888777665544322 1 111234578889999998755 4456788777643
Q ss_pred cccceeeeecC----cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEee-eeccceEEEEEcCCCcEEE
Q psy17863 238 ATGELLEEYKG----HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS-VGKAVVNSLCSHPTRKHIM 312 (341)
Q Consensus 238 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~ 312 (341)
..++.-..+.. ....+..+ ++.+++..++++ .+|.+ .+....++....+... .....+.++.|.+++..++
T Consensus 233 D~G~tW~~~~~~~~~~~~~~~~v--~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~ 308 (327)
T 2xbg_A 233 DNSENWGELLSPLRRNSVGFLDL--AYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFI 308 (327)
T ss_dssp TEEEEECCCBCTTSSCCSCEEEE--EESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEE
T ss_pred CCCCeeEeccCCcccCCcceEEE--EecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEE
Confidence 33443333221 11234444 677777666655 46766 3444556555544311 1235678898987777666
Q ss_pred EeCCCcEEEEE
Q psy17863 313 SACGNNVKLWT 323 (341)
Q Consensus 313 ~~~d~~i~vw~ 323 (341)
++.+|.|.-++
T Consensus 309 ~G~~G~i~~~~ 319 (327)
T 2xbg_A 309 LGQKGILLRYV 319 (327)
T ss_dssp ECSTTEEEEEC
T ss_pred EcCCceEEEEc
Confidence 66688766554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.70 E-value=7.7e-05 Score=61.76 Aligned_cols=235 Identities=6% Similarity=-0.064 Sum_probs=132.2
Q ss_pred EEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEE-EecCCCcEEEEECCCCceeeeec
Q psy17863 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKSVILWEVTTGQPVRRWR 94 (341)
Q Consensus 16 v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~ 94 (341)
-+|.+..++ .+|+.+. ...|+..++.......... .......++|.+.+..|+ +-...+.|..+++..+.....+.
T Consensus 79 ~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 79 RSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp SCEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred CeECCcccc-ceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 345555553 3444443 4578888887665444444 344578999998655555 44567889999987665433333
Q ss_pred ccCccEEEEEEcCC-CcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeec
Q psy17863 95 EHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG 173 (341)
Q Consensus 95 ~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 173 (341)
........+++.+. +.+.++-...+.|.+.++....... + ....
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~----------------------------------l-~~~~ 200 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV----------------------------------L-LWQS 200 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE----------------------------------E-ECSS
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE----------------------------------e-ecCC
Confidence 22234466788764 4444444455666666654322100 0 0011
Q ss_pred CceEEEEEECCCCceEEEeCC---CceEEEEccccc-------CCCCeEEEEEccCCCEEEE-eecCCeEEEEeccccce
Q psy17863 174 KAVVNSLCSHPTRKHIMSACG---NNVKLWTAEEDY-------GQEPIVDACFTRDCQCILT-CSTDECLRLFDKATGEL 242 (341)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~ 242 (341)
......++++|.+..+..+.. +.|..++++... .......++++|++..|+. -...+.|..+|+.....
T Consensus 201 l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~ 280 (386)
T 3v65_B 201 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR 280 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC
T ss_pred CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee
Confidence 123566777766555444432 345555544321 1234678999986655554 44567899999764332
Q ss_pred eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 243 LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
...+.........+ ++ ..+..+++-...+.|..++..+++....+.
T Consensus 281 ~~~~~~~~~~P~gi--av-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 281 KAVISQGLPHPFAI--TV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEECSSCSSEEEE--EE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEEECCCCCceEE--EE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 22222222233444 45 345566666778889888877787777766
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.62 E-value=5.9e-06 Score=74.72 Aligned_cols=59 Identities=10% Similarity=0.145 Sum_probs=41.2
Q ss_pred ceeEEEEe-cCCCEEEEecC-C----CcEEEEECCCC-ceeee-ecccCccEEEEEEcCCCcEEEEecCC
Q psy17863 57 EVNDATAA-CDSSQIASGAS-D----KSVILWEVTTG-QPVRR-WREHASKVTCVKFNEDSSVVISGSQD 118 (341)
Q Consensus 57 ~v~~~~~~-~~~~~l~~~~~-d----g~i~iw~~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d 118 (341)
.+...+|+ |||++|+.+.. + ..|+++|+.++ +.+.. +. .....++|+||++.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEEC
Confidence 67889999 99998875432 2 35999999988 63221 11 123467899999888776654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.61 E-value=8.4e-05 Score=57.10 Aligned_cols=200 Identities=13% Similarity=0.227 Sum_probs=124.4
Q ss_pred EecCcccceeEEEEecCCCEEE-EecCCCcEEEEECCCCceeeeecc-cCccEEEEEEcCCCcEEEEecCCCeEEEEEec
Q psy17863 50 TYGGHAHEVNDATAACDSSQIA-SGASDKSVILWEVTTGQPVRRWRE-HASKVTCVKFNEDSSVVISGSQDNTVMMWDVK 127 (341)
Q Consensus 50 ~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 127 (341)
.+.+-...+..++|+|+++.|+ +...++.|...|.. ++.++.+.- -......+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4555666899999999876555 46778889999987 887777642 22567889999988877776667788888876
Q ss_pred CCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEccc--
Q psy17863 128 SRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAEE-- 204 (341)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~-- 204 (341)
.... +.. +....+. +...........++++|.++.+.++.+ ....+|.+..
T Consensus 100 ~~~~--i~~-----------------~~~~~~~-------~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~ 153 (255)
T 3qqz_A 100 PNSE--VKI-----------------LKKIKIP-------LQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLL 153 (255)
T ss_dssp TTCC--EEE-----------------EEEEECC-------CSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTT
T ss_pred CCCe--eee-----------------eeeeccc-------cccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccc
Confidence 5431 000 0000000 000112334678999998866666554 3344554431
Q ss_pred ---------------ccCCCCeEEEEEccC-CCEEEEeecCCeEEEEeccccceeeeecCcc---------cceeEEEEE
Q psy17863 205 ---------------DYGQEPIVDACFTRD-CQCILTCSTDECLRLFDKATGELLEEYKGHK---------SGDFRIECC 259 (341)
Q Consensus 205 ---------------~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~~~~~~~~ 259 (341)
......+..++++|. +++++....++.+..+|.. ++.+..+.-.. .....+ +
T Consensus 154 ~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGi--a 230 (255)
T 3qqz_A 154 SSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGV--A 230 (255)
T ss_dssp CSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEE--E
T ss_pred cCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCee--E
Confidence 112335678999995 5566667777889999966 55544443221 123445 8
Q ss_pred eCCCCCEEEEecCCCcEEEEe
Q psy17863 260 LDSKDSQIFCGSSDGKIYKWQ 280 (341)
Q Consensus 260 ~~~~~~~l~~~~~dg~i~iwd 280 (341)
++++|++.++ ++.+.++.+.
T Consensus 231 ~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 231 MDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp ECTTCCEEEE-ETTTEEEEEE
T ss_pred ECCCCCEEEE-cCCceEEEEE
Confidence 9999975554 6666666665
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.59 E-value=0.00015 Score=60.93 Aligned_cols=183 Identities=9% Similarity=0.088 Sum_probs=107.2
Q ss_pred ceeEEEEecC--CCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCC---C-eEEEEEecCCC
Q psy17863 57 EVNDATAACD--SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD---N-TVMMWDVKSRS 130 (341)
Q Consensus 57 ~v~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~-~i~iwd~~~~~ 130 (341)
....++|+|+ +..|+.+...+.|+.++..+++...... .......++++++++++++-... . .+...+.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 3568899984 4455555444889999987776554433 44567899999999944443311 1 23333322221
Q ss_pred C---------cCeEEeecCCCceEE-EeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceE
Q psy17863 131 H---------HPIQCCLDSKDSQIF-CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVK 198 (341)
Q Consensus 131 ~---------~~~~~~~~~~~~~~~-~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~ 198 (341)
. .+......+.++.++ +-..++.|+.++..++.....+...........++++|+++.+..+. .+.|.
T Consensus 219 ~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~ 298 (433)
T 4hw6_A 219 TERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIY 298 (433)
T ss_dssp CCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence 1 112223333244454 44456789999887665423332222222335799999998555544 36777
Q ss_pred EEEcccccC--------------------------CCCeEEEEE---------ccCCCEEEEeecCCeEEEEeccccc
Q psy17863 199 LWTAEEDYG--------------------------QEPIVDACF---------TRDCQCILTCSTDECLRLFDKATGE 241 (341)
Q Consensus 199 ~~~~~~~~~--------------------------~~~i~~~~~---------~~~~~~l~~~~~d~~i~i~d~~~~~ 241 (341)
.++...... -.....+++ .++|.++++-...+.|+.++. ++.
T Consensus 299 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 299 RVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp EEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred EEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence 777542110 112456888 777887777777788999985 453
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=8.4e-05 Score=59.90 Aligned_cols=111 Identities=9% Similarity=0.060 Sum_probs=69.4
Q ss_pred cEEEEEEcc-CCCEEEEEeCCCeEEEEcCCCcceeeEecC-----cccceeEEEEec-CCCEEEEecC------------
Q psy17863 15 AIRAVRFNV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYGG-----HAHEVNDATAAC-DSSQIASGAS------------ 75 (341)
Q Consensus 15 ~v~~~~~~~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~------------ 75 (341)
.+..+++.+ +++ |+.+...+.|..+|..+++. ..+.. .......+++.+ +|+..++-..
T Consensus 81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp CEEEEEEETTTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence 578899998 665 45444455588899775542 22211 112467899999 8877666432
Q ss_pred -----CCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEe-cCCCeEEEEEecC
Q psy17863 76 -----DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISG-SQDNTVMMWDVKS 128 (341)
Q Consensus 76 -----dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~ 128 (341)
++.|..+|..+++....... ......++++++++.|+.+ ...+.|..+++..
T Consensus 159 ~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp HHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred cccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 36688888766654322221 1234568899988865554 4557788887764
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.55 E-value=0.00018 Score=59.51 Aligned_cols=199 Identities=7% Similarity=-0.041 Sum_probs=113.5
Q ss_pred CcEEEEEEccCCCEEE-EEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCE-EEEecCCCcEEEEECCCCceee
Q psy17863 14 GAIRAVRFNVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQ-IASGASDKSVILWEVTTGQPVR 91 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~ 91 (341)
.....++|.+.+..|. +-...+.|..+++........+.........+++.+.+.. +++-...+.|.+.+++......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 4567899997555444 4455788999998765544434333345577889875544 4555567788888876544333
Q ss_pred eecccCccEEEEEEcCCCcEEEEecC-C-CeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeE
Q psy17863 92 RWREHASKVTCVKFNEDSSVVISGSQ-D-NTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 169 (341)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~l~~~~~-d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 169 (341)
.+.........+++.|.+..|+.+.. . +.|..+++..... ..+.
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~----------------------------------~~~~ 241 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR----------------------------------RIIA 241 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----------------------------------EEEE
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc----------------------------------EEEE
Confidence 33333355688999986555554432 2 4555555433210 0000
Q ss_pred eeecCceEEEEEECCCCceEEEeCC--CceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEecccc
Q psy17863 170 HSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240 (341)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 240 (341)
.........++++|++..|..+.. +.|..+++.... .......+++ .++..+++-...+.|..++..++
T Consensus 242 -~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 242 -DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp -CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred -ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence 011223567777776655555442 556666654322 1223455666 34455556666777888886667
Q ss_pred ceeeeecC
Q psy17863 241 ELLEEYKG 248 (341)
Q Consensus 241 ~~~~~~~~ 248 (341)
+.+..+..
T Consensus 320 ~~~~~i~~ 327 (386)
T 3v65_B 320 KNQEIIRN 327 (386)
T ss_dssp CSCEEEEC
T ss_pred cceEEEcc
Confidence 66665543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00028 Score=57.50 Aligned_cols=198 Identities=7% Similarity=-0.044 Sum_probs=113.7
Q ss_pred CcEEEEEEccCCCEEE-EEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCC-EEEEecCCCcEEEEECCCCceee
Q psy17863 14 GAIRAVRFNVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSS-QIASGASDKSVILWEVTTGQPVR 91 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~ 91 (341)
..+..++|++....|. +-...+.|..+++........+.........+++.+.+. +.++-...+.|.+.+++......
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 152 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence 3467899997655555 444578899999876554443433334567889987554 44555667889999986544333
Q ss_pred eecccCccEEEEEEcCCCcEEEEec-CC-CeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeE
Q psy17863 92 RWREHASKVTCVKFNEDSSVVISGS-QD-NTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 169 (341)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 169 (341)
.+...-.....+++.|.+..|+... .. +.|...++..... ..+.
T Consensus 153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~----------------------------------~~~~ 198 (349)
T 3v64_C 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR----------------------------------RIIA 198 (349)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC----------------------------------EESC
T ss_pred EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc----------------------------------EEEE
Confidence 3333334568899998555554443 33 4555555443210 0000
Q ss_pred eeecCceEEEEEECCCCceEEEeCC--CceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEecccc
Q psy17863 170 HSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240 (341)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 240 (341)
.......+.++++|++..+..+.. +.|..+++.... .......+++ .++..+++-...+.|..++..++
T Consensus 199 -~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 199 -DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp -CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred -ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCC
Confidence 011234677888876665555442 556666665422 1223455666 34455555556677777776666
Q ss_pred ceeeeec
Q psy17863 241 ELLEEYK 247 (341)
Q Consensus 241 ~~~~~~~ 247 (341)
+.+..+.
T Consensus 277 ~~~~~i~ 283 (349)
T 3v64_C 277 KNQEIIR 283 (349)
T ss_dssp CSCEEEE
T ss_pred CccEEec
Confidence 6555554
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.45 E-value=9e-06 Score=72.42 Aligned_cols=73 Identities=12% Similarity=0.174 Sum_probs=49.9
Q ss_pred EEEEEccCCCEEEEEeC-CCeEEEEcCCCcceeeEecCccc-ceeEEEEecCCCEEEEec-CC-----CcEEEEECCCCc
Q psy17863 17 RAVRFNVDGSYCLTCGS-DKKIKLWNPYRNLLLKTYGGHAH-EVNDATAACDSSQIASGA-SD-----KSVILWEVTTGQ 88 (341)
Q Consensus 17 ~~~~~~~~~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-~d-----g~i~iw~~~~~~ 88 (341)
.++++.+++++++.|+. +..+.+||..+.+....-..+.. .-.+++..++++.++.|+ .+ ..+.+||..+++
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 35677889999999984 56899999877653322221222 223455667899999988 34 569999998765
Q ss_pred e
Q psy17863 89 P 89 (341)
Q Consensus 89 ~ 89 (341)
.
T Consensus 326 W 326 (656)
T 1k3i_A 326 W 326 (656)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00049 Score=57.19 Aligned_cols=225 Identities=11% Similarity=0.044 Sum_probs=128.7
Q ss_pred EEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEe-cCCCcEEEEECCCC----ceeeeecccCccEE
Q psy17863 27 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG-ASDKSVILWEVTTG----QPVRRWREHASKVT 101 (341)
Q Consensus 27 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~----~~~~~~~~~~~~v~ 101 (341)
+|+.+. ...|+..++.......... ....+..++|++.+..|+.+ ...+.|..+++... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 444444 5689999987665444443 45678899999866655554 45688988988652 22222332344567
Q ss_pred EEEEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEE
Q psy17863 102 CVKFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 180 (341)
Q Consensus 102 ~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 180 (341)
.+++.+ .+++.++-...+.|.+.+++..... .+. .........+
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~----------------------------------~l~-~~~~~~P~~i 207 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK----------------------------------TLF-RENGSKPRAI 207 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEE----------------------------------EEE-ECSSCCEEEE
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceE----------------------------------EEE-eCCCCCcceE
Confidence 888887 4444455455666666665533210 000 0112235667
Q ss_pred EECCCCceEEEeC-C--CceEEEEccccc-------CCCCeEEEEEccCCCEEEEee-cCCeEEEEeccccceeeeecCc
Q psy17863 181 CSHPTRKHIMSAC-G--NNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCS-TDECLRLFDKATGELLEEYKGH 249 (341)
Q Consensus 181 ~~~~~~~~~~~~~-~--~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~ 249 (341)
+++|.+..+..+. + +.|...+++... .-.....+++++++..|+.+. ..+.|..+|+............
T Consensus 208 avdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~ 287 (400)
T 3p5b_L 208 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE 287 (400)
T ss_dssp EEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECS
T ss_pred EEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCC
Confidence 7777554444433 1 445555554322 124567899998776666554 4678999998643322222221
Q ss_pred --ccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 250 --KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 250 --~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
......+ ++. .+.++++-...+.|..++..+++.+..+.
T Consensus 288 ~~l~~P~gl--~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 288 KRLAHPFSL--AVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp STTSSEEEE--EEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred CCCCCCEEE--EEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 1222334 443 34456666677889999988887777765
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00041 Score=55.67 Aligned_cols=225 Identities=8% Similarity=-0.001 Sum_probs=122.9
Q ss_pred EEEEEeCCCeEEEEcCCCcc-eeeEecCcccceeEEEEecCCCEE-EEecCCCcEEEEECCCCcee-eeecccCccEEEE
Q psy17863 27 YCLTCGSDKKIKLWNPYRNL-LLKTYGGHAHEVNDATAACDSSQI-ASGASDKSVILWEVTTGQPV-RRWREHASKVTCV 103 (341)
Q Consensus 27 ~l~t~~~dg~i~iw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~-~~~~~~~~~v~~~ 103 (341)
+|+.+. ...|+..++.... ....+-........++|.+.+..| ++-...+.|..+++..+... ..+...-.....+
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 344433 4678999887653 122222223456789999865554 45456788999998765322 1222222345678
Q ss_pred EEcC-CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEE
Q psy17863 104 KFNE-DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS 182 (341)
Q Consensus 104 ~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 182 (341)
++.+ ++.+.++-...+.|.++++.......+ . .........+++
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l---~--------------------------------~~~~~~P~giav 129 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL---F--------------------------------WQELDQPRAIAL 129 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEE---E--------------------------------CSSCSSEEEEEE
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEE---E--------------------------------eCCCCCccEEEE
Confidence 8876 444555555566777777654321100 0 001122455556
Q ss_pred CCCCceEEEeC---CCceEEEEccccc-------CCCCeEEEEEccCCCEEEEe-ecCCeEEEEeccccceeeee-cCcc
Q psy17863 183 HPTRKHIMSAC---GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTC-STDECLRLFDKATGELLEEY-KGHK 250 (341)
Q Consensus 183 ~~~~~~~~~~~---~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~-~~~~ 250 (341)
.|.+..+..+. .+.|...+++... .-.....++++|++..|+.+ +..+.|..+|+.. .....+ .+..
T Consensus 130 dp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~ 208 (318)
T 3sov_A 130 DPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVVKGSL 208 (318)
T ss_dssp EGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSCC
T ss_pred eCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-CceEEEecCCC
Confidence 55444333332 1344444443211 12345789999866655544 4567899999863 332322 2222
Q ss_pred cceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 251 SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
.....+ ++.. +..+++-...+.|..++..+++....+.
T Consensus 209 ~~P~gl--av~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 209 PHPFAL--TLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp SCEEEE--EEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCceEE--EEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 233444 4443 4456666677889999987887766665
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00054 Score=56.92 Aligned_cols=209 Identities=8% Similarity=-0.042 Sum_probs=118.0
Q ss_pred eCCcEEEEEEccCCCEEEEE-eCCCeEEEEcCCCc----ceeeEecCcccceeEEEEecC-CCEEEEecCCCcEEEEECC
Q psy17863 12 KQGAIRAVRFNVDGSYCLTC-GSDKKIKLWNPYRN----LLLKTYGGHAHEVNDATAACD-SSQIASGASDKSVILWEVT 85 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~-~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~ 85 (341)
....+..++|++.+..|..+ ...+.|+.+++... .....+.........+++.+. +++.++-...+.|.+.+++
T Consensus 110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence 34567899999865555544 45678888887652 223333334456778999874 4455555667889999987
Q ss_pred CCceeeeecccCccEEEEEEcCCCcEEEEecC--CCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCc
Q psy17863 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQ--DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSS 163 (341)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~ 163 (341)
.......+.........+++.|.+..|+.... .+.|...++.....
T Consensus 190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~-------------------------------- 237 (400)
T 3p5b_L 190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-------------------------------- 237 (400)
T ss_dssp TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC--------------------------------
T ss_pred CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc--------------------------------
Confidence 55443334334445788999986555554432 24455555443210
Q ss_pred ceeeeEeeecCceEEEEEECCCCceEEEeCC--CceEEEEccccc---------CCCCeEEEEEccCCCEEEEeecCCeE
Q psy17863 164 QISTLIHSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEEDY---------GQEPIVDACFTRDCQCILTCSTDECL 232 (341)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~i 232 (341)
..+. .........+++++++..|..+.. +.|..++++... .......+++. .+.++++-...+.|
T Consensus 238 --~~~~-~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V 313 (400)
T 3p5b_L 238 --YSLV-TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 313 (400)
T ss_dssp --EEEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSE
T ss_pred --EEEE-ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeE
Confidence 0000 011234677888876666655542 556666655422 11233455552 33445555566778
Q ss_pred EEEeccccceeeeecCcccceeEE
Q psy17863 233 RLFDKATGELLEEYKGHKSGDFRI 256 (341)
Q Consensus 233 ~i~d~~~~~~~~~~~~~~~~~~~~ 256 (341)
..+|..+++.+..+.........+
T Consensus 314 ~~~~~~~G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 314 FSANRLTGSDVNLLAENLLSPEDM 337 (400)
T ss_dssp EEEESSSCCCCEEEECSCSCEEEE
T ss_pred EEEEcCCCCceEEEecCCCCCceE
Confidence 888877777766665433333344
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00048 Score=55.27 Aligned_cols=113 Identities=10% Similarity=-0.030 Sum_probs=65.9
Q ss_pred CcEEEEEEccCCCEEE-EEeCCCeEEEEcCCC----cceeeEecCcccceeEEEEecCCCE-EEEecCCCcEEEEECCCC
Q psy17863 14 GAIRAVRFNVDGSYCL-TCGSDKKIKLWNPYR----NLLLKTYGGHAHEVNDATAACDSSQ-IASGASDKSVILWEVTTG 87 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~-t~~~dg~i~iw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~ 87 (341)
.....++|+++++.|. +-...+.|..+++.. ......+.........+++.+.+.. .++-...+.|.+.+++..
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 4567899998665554 445568999999875 2222223323345678899875544 455566788999998654
Q ss_pred ceeeeecccCccEEEEEEcCCCcEEEEecCC--CeEEEEEe
Q psy17863 88 QPVRRWREHASKVTCVKFNEDSSVVISGSQD--NTVMMWDV 126 (341)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~ 126 (341)
.....+.........+++.|.+..|+.+... +.|...++
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~ 150 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 150 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC
Confidence 3332333233456888888855555544332 34444443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=0.0011 Score=58.47 Aligned_cols=308 Identities=9% Similarity=-0.023 Sum_probs=169.3
Q ss_pred CcEEEEEEccCCCEE-EEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC--CCcEEEEECCCCcee
Q psy17863 14 GAIRAVRFNVDGSYC-LTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS--DKSVILWEVTTGQPV 90 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~ 90 (341)
.....+++.+.++.| ++-...+.|.+.++........+...-.....|++.|.+.+|+.+.. .+.|...+++.....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~ 163 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 163 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence 467789999865544 45455789999998654332333334455778999997666655543 456777776533332
Q ss_pred eeecccCccEEEEEEcCCCcEEEEe-cCCCeEEEEEecCCCCc---------CeEEeecCCCceEEEeeccCeEEEEEcc
Q psy17863 91 RRWREHASKVTCVKFNEDSSVVISG-SQDNTVMMWDVKSRSHH---------PIQCCLDSKDSQIFCGSSDGKIYKWQLV 160 (341)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~i~~~d~~ 160 (341)
......-.....+++++++..|+.+ ...+.|...|+...... +..... ..+...++-...+.|...|..
T Consensus 164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~-~~~~ly~td~~~~~V~~~d~~ 242 (619)
T 3s94_A 164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTL-FEDILYWTDWSTHSILACNKY 242 (619)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEE-SSSEEEEECTTTCSEEEEESS
T ss_pred EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEE-eCCEEEEecCCCCEEEEEECC
Confidence 2222234457899999865555554 45677888887653221 111111 223344444456677777776
Q ss_pred CCcceeeeEee-----------e-----c--C-----ceEEEE-----------EECCC---------------CceEEE
Q psy17863 161 DSSQISTLIHS-----------V-----G--K-----AVVNSL-----------CSHPT---------------RKHIMS 191 (341)
Q Consensus 161 ~~~~~~~~~~~-----------~-----~--~-----~~~~~~-----------~~~~~---------------~~~~~~ 191 (341)
+++....+... . . . .....+ +..|. ..+|+.
T Consensus 243 tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~ 322 (619)
T 3s94_A 243 TGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLL 322 (619)
T ss_dssp SCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEE
T ss_pred CCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEE
Confidence 55433221100 0 0 0 000001 11121 124555
Q ss_pred eCCCceEEEEcccccC---------CCCeEEEEEccCCCEEE-EeecCCeEEEEeccccceeeeecCcccceeEEEEEeC
Q psy17863 192 ACGNNVKLWTAEEDYG---------QEPIVDACFTRDCQCIL-TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLD 261 (341)
Q Consensus 192 ~~~~~i~~~~~~~~~~---------~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (341)
+..+.|+..++..... -.....+++.+.+..|+ +-...+.|+.+++........+...-.....+ +++
T Consensus 323 ~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~Gl--AvD 400 (619)
T 3s94_A 323 ARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGI--AVD 400 (619)
T ss_dssp EESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE--EEE
T ss_pred EcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCce--EEe
Confidence 5556666666654431 23467888988554444 44457789989886543322332222334455 666
Q ss_pred CC-CCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC---CCcEEEEEccc
Q psy17863 262 SK-DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC---GNNVKLWTAEE 326 (341)
Q Consensus 262 ~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~vw~~~~ 326 (341)
.. +++.++-...+.|.+.++.. +....+.. ..-....++++.|....|..+. ...|...+++.
T Consensus 401 ~~~~~lY~tD~~~~~I~v~~~~G-~~~~~l~~-~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG 467 (619)
T 3s94_A 401 WVARNLYWTDTGTDRIEVTRLNG-TMRKILIS-EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDG 467 (619)
T ss_dssp TTTTEEEEEETTTTEEEEEETTS-CSCEEEEC-TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred cccCcEEEEeCCCCcEEEEeCCC-CeEEEEEE-CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCC
Confidence 54 44555556678899998754 44444431 2345678999999744444433 24555555543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.34 E-value=0.0009 Score=56.20 Aligned_cols=222 Identities=7% Similarity=0.012 Sum_probs=122.6
Q ss_pred cEEEEEEccC--CCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCC---Cc-EEEEECCCCc
Q psy17863 15 AIRAVRFNVD--GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD---KS-VILWEVTTGQ 88 (341)
Q Consensus 15 ~v~~~~~~~~--~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~-i~iw~~~~~~ 88 (341)
....++|+|+ ...|..+...+.|+.+++.+++..... ........++++++++++++.... .. +...+...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568999984 344555544488999998777654433 344568899999999944443321 11 3333322211
Q ss_pred e-eeeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEecCCCC-----------cCeEEeecCCCceE-EEeeccCeE
Q psy17863 89 P-VRRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVKSRSH-----------HPIQCCLDSKDSQI-FCGSSDGKI 154 (341)
Q Consensus 89 ~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~g~i 154 (341)
. ...+. .......++++| ++.+.++-..++.|..++..++.. ........+.++.+ ++-...+.|
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I 297 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI 297 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence 1 01111 223346688899 676666666678888888774432 11123344445534 444456788
Q ss_pred EEEEccC--Ccc--eeeeEeee-------------cCceEEEEEE---------CCCCceEEEeCC-CceEEEEccccc-
Q psy17863 155 YKWQLVD--SSQ--ISTLIHSV-------------GKAVVNSLCS---------HPTRKHIMSACG-NNVKLWTAEEDY- 206 (341)
Q Consensus 155 ~~~d~~~--~~~--~~~~~~~~-------------~~~~~~~~~~---------~~~~~~~~~~~~-~~i~~~~~~~~~- 206 (341)
..++... ... ...+.... .-.....+++ .+++.+.++-.. +.|+.++.....
T Consensus 298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~G~v~ 377 (433)
T 4hw6_A 298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPEGRVT 377 (433)
T ss_dssp EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTTSEEE
T ss_pred EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCCCCEE
Confidence 8877653 211 11111110 1123667888 677776666554 567777643210
Q ss_pred ----------------------CCCCeEEEEEc-cCCCEEEEeecCCeEEEEecc
Q psy17863 207 ----------------------GQEPIVDACFT-RDCQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 207 ----------------------~~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~ 238 (341)
.-.....++++ ++|.++++-..++.|+.++++
T Consensus 378 t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 378 TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 01124567777 556555555556666666543
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00065 Score=54.39 Aligned_cols=201 Identities=9% Similarity=0.212 Sum_probs=115.5
Q ss_pred CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecC----CC---EEEEe-cC--CCcEEEEECC--CCceee
Q psy17863 24 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACD----SS---QIASG-AS--DKSVILWEVT--TGQPVR 91 (341)
Q Consensus 24 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~-~~--dg~i~iw~~~--~~~~~~ 91 (341)
...+++.....+-+.+||+ +++.+..+.. +.++.+..-|+ ++ ++++. -. +++|.+|++. +++ +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 3456666677888999999 8888888864 56777776663 22 22333 33 5789999773 333 43
Q ss_pred eecc------cC-ccEEEEEE--cCC-Cc-EEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEcc
Q psy17863 92 RWRE------HA-SKVTCVKF--NED-SS-VVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLV 160 (341)
Q Consensus 92 ~~~~------~~-~~v~~~~~--~~~-~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~ 160 (341)
.+.. .. ..+..+++ +|. +. +++....+|.+..|++.... +|.+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~--------------------~g~~------ 168 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADK--------------------NGYI------ 168 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECT--------------------TSCE------
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCC--------------------CCcc------
Confidence 3311 11 34555666 553 32 56667777777777764321 0000
Q ss_pred CCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEecc--
Q psy17863 161 DSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKA-- 238 (341)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-- 238 (341)
+.+.++.+.. ...+..+...+....|+.+-++.-|..|+.+
T Consensus 169 ~~~lVR~f~l-------------------------------------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~ 211 (355)
T 3amr_A 169 SGKKVRAFKM-------------------------------------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPD 211 (355)
T ss_dssp EEEEEEEEEC-------------------------------------SSCEEEEEEETTTTEEEEEETTTEEEEEECSTT
T ss_pred cceEEEEecC-------------------------------------CCCcceEEEcCCCCeEEEecccceEEEEeCCcC
Confidence 0111111111 2235566677777778888887667777744
Q ss_pred ---ccceeeeec-C-cccceeEEEEEeCCCCC-EEEEec-CCCcEEEEeee-CCCceEEEE
Q psy17863 239 ---TGELLEEYK-G-HKSGDFRIECCLDSKDS-QIFCGS-SDGKIYKWQLV-DSSQISTLI 291 (341)
Q Consensus 239 ---~~~~~~~~~-~-~~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~iwd~~-~~~~~~~~~ 291 (341)
+++.+..+. + -...+..+.+...++++ +|++.+ .+.+..+||.. +.+.+..+.
T Consensus 212 ~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 212 GGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp SCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred CCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 234444432 2 22346666444466655 555554 67799999986 566677775
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.0011 Score=56.13 Aligned_cols=112 Identities=9% Similarity=0.092 Sum_probs=66.4
Q ss_pred cEEEEEEccC-C-CEEEEEeCCCeEEEEcCCCcceeeEecCc---ccceeEEEE-------ecCCCEEEEecCCC-c---
Q psy17863 15 AIRAVRFNVD-G-SYCLTCGSDKKIKLWNPYRNLLLKTYGGH---AHEVNDATA-------ACDSSQIASGASDK-S--- 78 (341)
Q Consensus 15 ~v~~~~~~~~-~-~~l~t~~~dg~i~iw~~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~dg-~--- 78 (341)
....|+|+|. . +++++-...+.|++.|+.++......... ......++| ++++++|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3568999983 4 44444444467999998876655444322 235789999 99999666665543 2
Q ss_pred ---EEEEECCC-Ccee-----eeecccCccEEEEEEcC-CCcEEEEecCCCeEEEEEec
Q psy17863 79 ---VILWEVTT-GQPV-----RRWREHASKVTCVKFNE-DSSVVISGSQDNTVMMWDVK 127 (341)
Q Consensus 79 ---i~iw~~~~-~~~~-----~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~ 127 (341)
|.+.+... ++.. ..+... .....++++| ++.++++-..++.|..+|+.
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 55665333 2221 122211 1234567777 44555555566777777776
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00043 Score=55.38 Aligned_cols=101 Identities=10% Similarity=0.206 Sum_probs=65.5
Q ss_pred EEEEeecCCeEEEEecc-------ccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeee-----CCCceEE
Q psy17863 222 CILTCSTDECLRLFDKA-------TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV-----DSSQIST 289 (341)
Q Consensus 222 ~l~~~~~d~~i~i~d~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~ 289 (341)
++++...+|.+..|++. +.+.+++|..... +..+ ..++....|+.+-++..|..++.+ +++.+..
T Consensus 145 yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq-~Egc--vvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~ 221 (355)
T 3amr_A 145 YAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQ-TEGM--AADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDR 221 (355)
T ss_dssp EEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSC-EEEE--EEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEE
T ss_pred EEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCC-cceE--EEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEE
Confidence 56777778888888873 3466777765443 3333 678888899999988666555543 2233433
Q ss_pred EEeeeeccceEEEEE--cCCCc-EEEEeC--CCcEEEEEcc
Q psy17863 290 LIHSVGKAVVNSLCS--HPTRK-HIMSAC--GNNVKLWTAE 325 (341)
Q Consensus 290 ~~~~~~~~~v~~~~~--~~~~~-~l~~~~--d~~i~vw~~~ 325 (341)
+....-...+..|++ .++++ +|++++ +++..+|+.+
T Consensus 222 ~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 222 ADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp BSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred ecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 321122246788887 45555 666666 8899999986
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.0022 Score=58.00 Aligned_cols=116 Identities=10% Similarity=-0.016 Sum_probs=68.7
Q ss_pred eCCcEEEEEEccCCC-EEEEEeCCCeEEEEcCCCc----ceeeEecCcccceeEEEEecCCCEE-EEecCCCcEEEEECC
Q psy17863 12 KQGAIRAVRFNVDGS-YCLTCGSDKKIKLWNPYRN----LLLKTYGGHAHEVNDATAACDSSQI-ASGASDKSVILWEVT 85 (341)
Q Consensus 12 h~~~v~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~ 85 (341)
....+..|+|.+... ++++-...+.|+.+++... .....+.........|++.+.++.| ++-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 345677899988544 4445455678888887642 2233333344567789998876544 455567889999987
Q ss_pred CCceeeeecccCccEEEEEEcCCCcEEEEecCC--CeEEEEEec
Q psy17863 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQD--NTVMMWDVK 127 (341)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~ 127 (341)
.......+.........|++.|.+..|+.+... +.|...++.
T Consensus 502 G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d 545 (791)
T 3m0c_C 502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN 545 (791)
T ss_dssp SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT
T ss_pred CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC
Confidence 544333333334457889998865555554321 445444443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0025 Score=56.15 Aligned_cols=308 Identities=9% Similarity=0.005 Sum_probs=164.0
Q ss_pred CcEEEEEEccCCCEEEEEeC--CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEe-cCCCcEEEEECCCCcee
Q psy17863 14 GAIRAVRFNVDGSYCLTCGS--DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG-ASDKSVILWEVTTGQPV 90 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~--dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~ 90 (341)
.....|++.|.+.+|..... .+.|...++............-...+.+++++++..|..+ ...+.|...+++.....
T Consensus 127 ~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~ 206 (619)
T 3s94_A 127 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ 206 (619)
T ss_dssp SCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC
T ss_pred CCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccE
Confidence 44668888886555544432 4567666664333322233334457889999876666655 45678988888654332
Q ss_pred eeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC---------cCe--------------------------E
Q psy17863 91 RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH---------HPI--------------------------Q 135 (341)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---------~~~--------------------------~ 135 (341)
............+++.++ ...++-...+.|...|..+++. .+. .
T Consensus 207 ~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~l 285 (619)
T 3s94_A 207 AVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHL 285 (619)
T ss_dssp ---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSE
T ss_pred EEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccce
Confidence 222211122245666654 3444444556677776544321 000 0
Q ss_pred EeecCC------------------------CceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEE
Q psy17863 136 CCLDSK------------------------DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS 191 (341)
Q Consensus 136 ~~~~~~------------------------~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (341)
|+..+. ...++.-+..+.|+..++.................+..+++.+.+..+..
T Consensus 286 Cl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~ 365 (619)
T 3s94_A 286 CLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYW 365 (619)
T ss_dssp EEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEE
T ss_pred EECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEE
Confidence 110000 01122222344555556554432211111112334678899986655555
Q ss_pred eC--CCceEEEEccccc-------CCCCeEEEEEccC-CCEEEEeecCCeEEEEeccccceeeeec-CcccceeEEEEEe
Q psy17863 192 AC--GNNVKLWTAEEDY-------GQEPIVDACFTRD-CQCILTCSTDECLRLFDKATGELLEEYK-GHKSGDFRIECCL 260 (341)
Q Consensus 192 ~~--~~~i~~~~~~~~~-------~~~~i~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~ 260 (341)
+. .+.|..++..... .......+++.+. +++.++-+..+.|.+.++... ....+. ..-.....+ ++
T Consensus 366 sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~-~~~~l~~~~l~~P~~i--av 442 (619)
T 3s94_A 366 TDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT-MRKILISEDLEEPRAI--VL 442 (619)
T ss_dssp EETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECTTCCSEEEE--EE
T ss_pred EeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC-eEEEEEECCCCCeeeE--EE
Confidence 43 4677777766432 1235668888874 455555556788999988643 333332 222233444 78
Q ss_pred CCCCCEEEEec--CCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC--CCcEEEEEcccc
Q psy17863 261 DSKDSQIFCGS--SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEED 327 (341)
Q Consensus 261 ~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~~ 327 (341)
+|...+|+... ..+.|...++ +|.....+.. ..-...+.+++++++..|..+. .+.|...+++..
T Consensus 443 dp~~G~ly~tD~g~~~~I~r~~~-dG~~~~~l~~-~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 443 DPMVGYMYWTDWGEIPKIERAAL-DGSDRVVLVN-TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp ETTTTEEEEEECSSSCEEEEEET-TSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred EcCCCcEEEecCCCCCEEEEEcc-CCCccEEEEe-CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence 88644555443 2356666665 3444444431 2345678999998777666665 677888887654
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0013 Score=52.98 Aligned_cols=218 Identities=9% Similarity=0.007 Sum_probs=118.6
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec---CcccceeEEEEecCCCEEEEecCCCcEEEEECCCCce
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG---GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP 89 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 89 (341)
...+.++.|.+ +..++ ++.++.|..-. ..++.-.... .+...+..+.+.+++..++++ .+|.|.. ..+.|+.
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~S~-DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIMLHTT-DGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEEEEES-STTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEE-EECCCeEEEEC-CCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC
Confidence 44688999986 44444 45567554432 2333322222 233457788887777666655 4554422 2233433
Q ss_pred eee-ecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecC--------CCCcCeEEeecCCCceEEEeeccCeEEEEEcc
Q psy17863 90 VRR-WREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS--------RSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLV 160 (341)
Q Consensus 90 ~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~ 160 (341)
-.. .......+..+.+.+++.+++.+...+..+-.|-.. .....+..+...+++.++..+.+|.++..+..
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D 233 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPD 233 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETT
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCC
Confidence 222 233456788999999888777765443333333211 11122333333445566677778887766422
Q ss_pred CCcceeeeEee--ecCceEEEEEECCCCceEEEeCCCceEEEEccccc----------CCCCeEEEEEccCCCEEEEeec
Q psy17863 161 DSSQISTLIHS--VGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY----------GQEPIVDACFTRDCQCILTCST 228 (341)
Q Consensus 161 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~ 228 (341)
.++.-..+... .....+..+.+.+++..++++.++.+.. ..+... ....+..+.|.+++. +++++.
T Consensus 234 ~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~ 311 (327)
T 2xbg_A 234 NSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLC-SQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQ 311 (327)
T ss_dssp EEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEEE-ESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECS
T ss_pred CCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEEE-eCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcC
Confidence 22222222111 1123478888888888888877776632 222111 235678888876665 555567
Q ss_pred CCeEEEEec
Q psy17863 229 DECLRLFDK 237 (341)
Q Consensus 229 d~~i~i~d~ 237 (341)
+|.|..++-
T Consensus 312 ~G~i~~~~~ 320 (327)
T 2xbg_A 312 KGILLRYVT 320 (327)
T ss_dssp TTEEEEECC
T ss_pred CceEEEEcC
Confidence 887776653
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0017 Score=52.07 Aligned_cols=226 Identities=12% Similarity=-0.018 Sum_probs=116.7
Q ss_pred EEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEE-EecCCCcEEEEECCC----CceeeeecccCccEE
Q psy17863 27 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKSVILWEVTT----GQPVRRWREHASKVT 101 (341)
Q Consensus 27 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~----~~~~~~~~~~~~~v~ 101 (341)
+|+.+. ...|+..|+.+.+....+. .......++|++++..|+ +-..++.|..+++.. ......+...-....
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 344444 3568888988766555444 345678899998665555 445568899999875 222222222223346
Q ss_pred EEEEcCC-CcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEE
Q psy17863 102 CVKFNED-SSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 180 (341)
Q Consensus 102 ~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 180 (341)
.+++.+. +++.++-...+.|.+.++.... ...+.. ......
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~----------------------------------~~~~~~-~~~~~P--- 122 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVK----------------------------------RKTLFR-ENGSKP--- 122 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSS----------------------------------EEEEEE-CTTCCE---
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCc----------------------------------eEEEEE-CCCCCc---
Confidence 6777753 3333444445566665544211 000000 011123
Q ss_pred EECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeec-C-CeEEEEeccccceeeeec-CcccceeEEE
Q psy17863 181 CSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCST-D-ECLRLFDKATGELLEEYK-GHKSGDFRIE 257 (341)
Q Consensus 181 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-~~i~i~d~~~~~~~~~~~-~~~~~~~~~~ 257 (341)
..++++|.+..|+.... . +.|..+++. ++....+. ..-.....+
T Consensus 123 -------------------------------~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gl- 169 (316)
T 1ijq_A 123 -------------------------------RAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGI- 169 (316)
T ss_dssp -------------------------------EEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEE-
T ss_pred -------------------------------ceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEE-
Confidence 34445543333333222 2 466666654 33322221 111223344
Q ss_pred EEeCCCCCEEEEe-cCCCcEEEEeeeCCCceEEEEee-eeccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 258 CCLDSKDSQIFCG-SSDGKIYKWQLVDSSQISTLIHS-VGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 258 ~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
++++++..|+.+ ...+.|..+|+. +.....+... ........+++. .+.++++-. .+.|..++..++.
T Consensus 170 -a~d~~~~~lY~~D~~~~~I~~~d~d-g~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 170 -TLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp -EEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred -EEeccCCEEEEEECCCCeEEEEecC-CCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 788876666554 456789999975 4444444311 112345677775 355555555 7888888865443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.002 Score=52.45 Aligned_cols=101 Identities=9% Similarity=0.061 Sum_probs=61.0
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc--eeeEec---CcccceeEEEEecC---CCEEEEecC-C-----Cc
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL--LLKTYG---GHAHEVNDATAACD---SSQIASGAS-D-----KS 78 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----g~ 78 (341)
-..-..++|.|+|+++++ ..+|.|.+++ +++ .+..+. ........++++|+ +..|.++.. . +.
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 345679999999985555 5679999998 333 222221 12356789999998 555554433 2 56
Q ss_pred EEEEECCCCc-----e-eeeec---ccCccEEEEEEcCCCcEEEEec
Q psy17863 79 VILWEVTTGQ-----P-VRRWR---EHASKVTCVKFNEDSSVVISGS 116 (341)
Q Consensus 79 i~iw~~~~~~-----~-~~~~~---~~~~~v~~~~~~~~~~~l~~~~ 116 (341)
|..++...++ . +..+. ........++|.|+|.+.++.+
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 7788876432 1 11122 1111235789999997666544
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0053 Score=55.75 Aligned_cols=301 Identities=8% Similarity=0.054 Sum_probs=168.5
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeec
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 94 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 94 (341)
.|.++...+++..|..|.. +-+..+|..+++...........|.++...+++.+.+ |+.+| +.+++..+++......
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~G-l~~~~~~~~~~~~~~~ 268 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDNG-LYVYHNDTTPLQHIIH 268 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETTE-EEEECCTTSCCEEECC
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCCc-eeEEecCCCcEEEEEc
Confidence 4888888777775555554 4588888776543222111234688888777776544 44444 8888876654322111
Q ss_pred -------ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCC-------------CCcCeEEeecCCCceEEEeeccCeE
Q psy17863 95 -------EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR-------------SHHPIQCCLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 95 -------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------------~~~~~~~~~~~~~~~~~~~~~~g~i 154 (341)
-....|.++....++. |..|+..| +.++..... ....+..+....++.+..|+.+| +
T Consensus 269 ~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G-l 345 (758)
T 3ott_A 269 DSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG-L 345 (758)
T ss_dssp CTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-E
T ss_pred CCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-c
Confidence 1234588888887776 44455556 443322110 11234445555566777777554 6
Q ss_pred EEEEccCCcc--eeeeEe-----eecCceEEEEEECCCCceEEEeCCCceEEEEccccc-------------CCCCeEEE
Q psy17863 155 YKWQLVDSSQ--ISTLIH-----SVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY-------------GQEPIVDA 214 (341)
Q Consensus 155 ~~~d~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------~~~~i~~~ 214 (341)
..++..+++. ...+.. ......|.++...+++.+.+.+ .+.+..++..+.. ....|.++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i 424 (758)
T 3ott_A 346 IRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYI 424 (758)
T ss_dssp EEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEE
T ss_pred eeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEE
Confidence 6666554221 111110 1123458889888888877766 5578888765421 12346777
Q ss_pred EEccCCCEEEEeecCCeEEEEecccc-----cee---eeec---C-cccceeEEEEEeCCCCCEEEEecCCCcEEEEeee
Q psy17863 215 CFTRDCQCILTCSTDECLRLFDKATG-----ELL---EEYK---G-HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 282 (341)
Q Consensus 215 ~~~~~~~~l~~~~~d~~i~i~d~~~~-----~~~---~~~~---~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (341)
...++|+ |..|+..+-|.++|..+. ... ..+. + ....+..+ ..+++|++-+.++..+-+..+|..
T Consensus 425 ~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i--~~d~~g~lWi~~~t~~Gl~~~d~~ 501 (758)
T 3ott_A 425 FEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQI--IPDNEGNVWVLLYNNKGIDKINPR 501 (758)
T ss_dssp EECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEE--EECTTSCEEEEETTCSSEEEEETT
T ss_pred EEcCCCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeE--EEcCCCCEEEEccCCCCcEEEeCC
Confidence 7777776 555666556888886531 111 1111 1 11235555 677888766533334558888876
Q ss_pred CCCceEEEEee--eeccceEEEEEcCCCcEEEEeCCCcEEEEEcccc
Q psy17863 283 DSSQISTLIHS--VGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED 327 (341)
Q Consensus 283 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~ 327 (341)
+++.. .+... .....+.++....+|.+.+.... -+..++..++
T Consensus 502 ~~~~~-~~~~~~~~~~~~~~~i~~d~~g~lWigt~~-Gl~~~~~~~~ 546 (758)
T 3ott_A 502 TREVT-KLFADELTGEKSPNYLLCDEDGLLWVGFHG-GVMRINPKDE 546 (758)
T ss_dssp TTEEE-EECTTTSCGGGCEEEEEECTTSCEEEEETT-EEEEECC--C
T ss_pred CCceE-EecCCCcCCCcccceEEECCCCCEEEEecC-ceEEEecCCC
Confidence 55432 22210 11346788888888887766544 4777776544
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0031 Score=52.95 Aligned_cols=119 Identities=8% Similarity=0.089 Sum_probs=74.4
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEeCC-C----eEEEEcCCCccee--eEecCcccceeEEEEec-CCCEEEEecCCCcE
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCGSD-K----KIKLWNPYRNLLL--KTYGGHAHEVNDATAAC-DSSQIASGASDKSV 79 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~~d-g----~i~iw~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 79 (341)
.+.........++|+++|++|+.+... + .+...+ ..+... ..+. .......++++| ++.++++-..++.|
T Consensus 173 ~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V 250 (430)
T 3tc9_A 173 TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQV 250 (430)
T ss_dssp EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEE
Confidence 333344567899999999966665541 1 233344 233222 2222 123456788999 67766666677899
Q ss_pred EEEECCCCceeeeecc-cCccEEEEEEcCCCcEE-EEecCCCeEEEEEecC
Q psy17863 80 ILWEVTTGQPVRRWRE-HASKVTCVKFNEDSSVV-ISGSQDNTVMMWDVKS 128 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~ 128 (341)
..++...+........ .......++|+|++++| ++-...+.|..++...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 251 FRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 9999876654222221 12346789999999954 4555678899988764
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0021 Score=50.98 Aligned_cols=118 Identities=9% Similarity=0.112 Sum_probs=76.8
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEe-CCCeEEEEcCCCcceeeE-ecC----c--ccceeEEEE---ecCCCEEEEec--
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCG-SDKKIKLWNPYRNLLLKT-YGG----H--AHEVNDATA---ACDSSQIASGA-- 74 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~-~dg~i~iw~~~~~~~~~~-~~~----~--~~~v~~~~~---~~~~~~l~~~~-- 74 (341)
.++...---.+++|.+....|..++ ..++|..|+...+..... +.+ . ...+..+.| .|+++++++..
T Consensus 7 ~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 7 DVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp EECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred EecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 3444444556889988655666555 689999999875543332 222 1 124688999 68877776543
Q ss_pred -----------CCCcEEEEECC---CCceeeeec--c-----------cCccEEEEEEcCCCcEEEEecCC-CeEEEEE
Q psy17863 75 -----------SDKSVILWEVT---TGQPVRRWR--E-----------HASKVTCVKFNEDSSVVISGSQD-NTVMMWD 125 (341)
Q Consensus 75 -----------~dg~i~iw~~~---~~~~~~~~~--~-----------~~~~v~~~~~~~~~~~l~~~~~d-~~i~iwd 125 (341)
.+..|..+|+. +++.+.... . -......++..++|+..++++.. +.|...+
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVS 165 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence 25779999998 777665432 1 11347889999999888887766 5544443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.10 E-value=3.4e-05 Score=68.98 Aligned_cols=218 Identities=9% Similarity=-0.003 Sum_probs=114.1
Q ss_pred CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEec-CCCcEEEEECCC----CceeeeecccCccEEEEEEcC-
Q psy17863 34 DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA-SDKSVILWEVTT----GQPVRRWREHASKVTCVKFNE- 107 (341)
Q Consensus 34 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~----~~~~~~~~~~~~~v~~~~~~~- 107 (341)
.+.|+..++.+.+....+. ....+..++|.+.+..|+.+. ..+.|+.+++.. ......+.........+++.+
T Consensus 385 ~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 4578888877655444333 234567889998776666654 467899999875 222222221112334567764
Q ss_pred CCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCc
Q psy17863 108 DSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 187 (341)
Q Consensus 108 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (341)
.++++++-...+.|.++++...... .+. .........++++|.+.
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~---~l~--------------------------------~~~~~~P~giavDp~~g 508 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRK---TLF--------------------------------REQGSKPRAIVVDPVHG 508 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEE---EEC--------------------------------CCSSCCCCCEECCSSSS
T ss_pred CCcEEEEeccCCeEEEEecCCCceE---EEE--------------------------------eCCCCCcceEEEccCCC
Confidence 3444444344566666665533210 000 00111234556666544
Q ss_pred eEEEeCC---CceEEEEccccc-------CCCCeEEEEEccCCCEE-EEeecCCeEEEEeccccceeeeecC---cccce
Q psy17863 188 HIMSACG---NNVKLWTAEEDY-------GQEPIVDACFTRDCQCI-LTCSTDECLRLFDKATGELLEEYKG---HKSGD 253 (341)
Q Consensus 188 ~~~~~~~---~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~ 253 (341)
.|+.+.. +.|..+++.... .......++++|++..| ++-...+.|..+++... ....+.. .....
T Consensus 509 ~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P 587 (699)
T 1n7d_A 509 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHP 587 (699)
T ss_dssp CCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS-CCEEECCCSSSCSSC
T ss_pred cEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC-ceEEEEecCCcCCCc
Confidence 4444331 344444443221 12334578999875544 44455678999998643 2222221 11112
Q ss_pred eEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 254 FRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
..+ ++..+ .++++....+.|..++..+++.+..+.
T Consensus 588 ~gl--avd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 588 FSL--AVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp CCC--EEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred eEe--EEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 223 44443 455666677889999877777666554
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0094 Score=56.41 Aligned_cols=303 Identities=9% Similarity=0.052 Sum_probs=153.1
Q ss_pred CCcEEEEEEccC------CCEEEEEeC-CCeEEEEcCCCcceeeEecC-cccceeEEEEe--cCCCEEEEecCCCcEEEE
Q psy17863 13 QGAIRAVRFNVD------GSYCLTCGS-DKKIKLWNPYRNLLLKTYGG-HAHEVNDATAA--CDSSQIASGASDKSVILW 82 (341)
Q Consensus 13 ~~~v~~~~~~~~------~~~l~t~~~-dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~dg~i~iw 82 (341)
...|.|+++.|. ++++|.|.. |++|+|+++.+.+.+....- ......++.+. ....+|..|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 468999999863 368999996 99999999987665543321 11233333332 234578899999988666
Q ss_pred ECC--CCceeee--ecccCccEEEEEEcCCCc-EEEEecCC--------CeEEEEEecCCCCcCeEEeec--CCCceEEE
Q psy17863 83 EVT--TGQPVRR--WREHASKVTCVKFNEDSS-VVISGSQD--------NTVMMWDVKSRSHHPIQCCLD--SKDSQIFC 147 (341)
Q Consensus 83 ~~~--~~~~~~~--~~~~~~~v~~~~~~~~~~-~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~ 147 (341)
.++ +|+.... ..-...++.-..+...+. .+++.+.. +.+.+-.+.-........+.. .++ -++.
T Consensus 633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~-g~v~ 711 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD-SLAL 711 (1158)
T ss_dssp EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTT-EEEE
T ss_pred EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCC-cEEE
Confidence 553 4433211 111123443333332222 22222221 222222222211111111111 122 3333
Q ss_pred eeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC---------------------------------
Q psy17863 148 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG--------------------------------- 194 (341)
Q Consensus 148 ~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 194 (341)
..++.+++..+.+.........+ -...+..++++|..+.++....
T Consensus 712 -~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1158)
T 3ei3_A 712 -ANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLF 789 (1158)
T ss_dssp -ECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC
T ss_pred -EcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccc
Confidence 33455888887655433322222 2345677777776665443321
Q ss_pred -----------------CceEEEEccccc--------CCCCeEEEE---EccC-CCEEEEee----------cCCeEEEE
Q psy17863 195 -----------------NNVKLWTAEEDY--------GQEPIVDAC---FTRD-CQCILTCS----------TDECLRLF 235 (341)
Q Consensus 195 -----------------~~i~~~~~~~~~--------~~~~i~~~~---~~~~-~~~l~~~~----------~d~~i~i~ 235 (341)
..+++.|..+.. ....+.+++ |..+ ..++++|+ ..|.|.+|
T Consensus 790 ~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf 869 (1158)
T 3ei3_A 790 SSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVF 869 (1158)
T ss_dssp ----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEE
T ss_pred cccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEE
Confidence 123444433211 222334443 3322 46788776 35789999
Q ss_pred eccccce--eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEE
Q psy17863 236 DKATGEL--LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS 313 (341)
Q Consensus 236 d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 313 (341)
++..++. +.+.. ..++++++. .+ +|+++++. ..++++|++...+.+. ... .+-..|..+.....+.+++.
T Consensus 870 ~v~~~kL~lv~~~~-v~g~v~al~-~~--~g~Lla~i--g~~l~vy~l~~~~~L~-~~~-~~~~~i~~~~l~~~~~~I~v 941 (1158)
T 3ei3_A 870 QYSDGKLQTVAEKE-VKGAVYSMV-EF--NGKLLASI--NSTVRLYEWTTEKELR-TEC-NHYNNIMALYLKTKGDFILV 941 (1158)
T ss_dssp EEETTEEEEEEEEE-ESSCEEEEE-EE--TTEEEEEE--TTEEEEEEECTTSCEE-EEE-EECCCSCEEEEEEETTEEEE
T ss_pred EEECCEEEEEEEEE-cCCcCEEEe-ee--CCEEEEEc--CCEEEEEECCCCceEE-EEe-eccccEEEEEEeccCCEEEE
Confidence 9874432 22222 345566653 23 35444433 4689999998766544 221 12222333333335678888
Q ss_pred eC-CCcEEEEEccc
Q psy17863 314 AC-GNNVKLWTAEE 326 (341)
Q Consensus 314 ~~-d~~i~vw~~~~ 326 (341)
|. -..|.+...+.
T Consensus 942 gD~~~Sv~~~~y~~ 955 (1158)
T 3ei3_A 942 GDLMRSVLLLAYKP 955 (1158)
T ss_dssp EESSBCEEEEEEET
T ss_pred EEhhheEEEEEEEc
Confidence 88 66677665443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.04 E-value=0.003 Score=50.62 Aligned_cols=197 Identities=10% Similarity=-0.023 Sum_probs=111.8
Q ss_pred cEEEEEEccCCC-EEEEEeCCCeEEEEcCCCccee-eEecCcccceeEEEEecCC-CEEEEecCCCcEEEEECCCCceee
Q psy17863 15 AIRAVRFNVDGS-YCLTCGSDKKIKLWNPYRNLLL-KTYGGHAHEVNDATAACDS-SQIASGASDKSVILWEVTTGQPVR 91 (341)
Q Consensus 15 ~v~~~~~~~~~~-~l~t~~~dg~i~iw~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~ 91 (341)
....++|.+.+. ++.+-...+.|..+++...... ..+...-.....+++.+.+ +++++-...+.|.+++++......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 466888988544 4445555788999987765322 2222223456778998744 445555567889999986543322
Q ss_pred eecccCccEEEEEEcCCCcEEEEecC--CCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeE
Q psy17863 92 RWREHASKVTCVKFNEDSSVVISGSQ--DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 169 (341)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 169 (341)
...........+++.|.+..|+.+.. .+.|...++..... ..+.
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~----------------------------------~~~~ 161 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR----------------------------------FIII 161 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC----------------------------------EEEE
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe----------------------------------EEEE
Confidence 23233455688999886555555442 34555555432110 0000
Q ss_pred eeecCceEEEEEECCCCceEEEeCC--CceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEecccc
Q psy17863 170 HSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240 (341)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 240 (341)
...-...+.++++|++..+..+.. +.|..++++... .......+++.. +..+++-...+.|..++..++
T Consensus 162 -~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 162 -NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp -CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred -ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence 011233677888876665555442 566666665322 123344566643 344555556678888888777
Q ss_pred ceeeeec
Q psy17863 241 ELLEEYK 247 (341)
Q Consensus 241 ~~~~~~~ 247 (341)
+....+.
T Consensus 240 ~~~~~i~ 246 (318)
T 3sov_A 240 EGLREIH 246 (318)
T ss_dssp CSCEEEE
T ss_pred CceEEEe
Confidence 7655554
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.96 E-value=9.3e-05 Score=66.19 Aligned_cols=199 Identities=9% Similarity=-0.021 Sum_probs=105.8
Q ss_pred CcEEEEEEccCCCEEEEEe-CCCeEEEEcCCC----cceeeEecCcccceeEEEEecCC-CEEEEecCCCcEEEEECCCC
Q psy17863 14 GAIRAVRFNVDGSYCLTCG-SDKKIKLWNPYR----NLLLKTYGGHAHEVNDATAACDS-SQIASGASDKSVILWEVTTG 87 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~-~dg~i~iw~~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~ 87 (341)
..+..++|.+.+..|..+. ..+.|+.+++.. ......+.........+++.+.+ +++++-...+.|.+.++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456788988666665543 457888888764 22222222222335567887544 44455456788999998654
Q ss_pred ceeeeecccCccEEEEEEcCCCcEEEEecCC--CeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcce
Q psy17863 88 QPVRRWREHASKVTCVKFNEDSSVVISGSQD--NTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
.....+.........+++.|.+..|+.+... +.|..+++.......
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~-------------------------------- 533 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-------------------------------- 533 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--------------------------------
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--------------------------------
Confidence 4333333223345677888865555544321 445544443221000
Q ss_pred eeeEeeecCceEEEEEECCCCceEEEeCC--CceEEEEccccc---------CCCCeEEEEEccCCCEEEEeecCCeEEE
Q psy17863 166 STLIHSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEEDY---------GQEPIVDACFTRDCQCILTCSTDECLRL 234 (341)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~i~i 234 (341)
+. .......+.++++|++..|+.+.. +.|..+++.... .......+++..+ .++++....+.|..
T Consensus 534 --l~-~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~ 609 (699)
T 1n7d_A 534 --LV-TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFS 609 (699)
T ss_dssp --ES-CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEE
T ss_pred --EE-eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEE
Confidence 00 001123456777776555444432 456666654321 0112234444443 44555566788999
Q ss_pred EeccccceeeeecC
Q psy17863 235 FDKATGELLEEYKG 248 (341)
Q Consensus 235 ~d~~~~~~~~~~~~ 248 (341)
++..+++.+..+..
T Consensus 610 ~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 610 ANRLTGSDVNLLAE 623 (699)
T ss_dssp EETTTEEEEECCCT
T ss_pred EEccCCCceEEeec
Confidence 99888887776653
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0043 Score=49.23 Aligned_cols=63 Identities=11% Similarity=0.089 Sum_probs=36.2
Q ss_pred CCCEEEEEe-CC-----CeEEEEcCCCcceeeE--ecCcccceeEEEEecCCCEEEEecCC-----CcEEEEECCCCc
Q psy17863 24 DGSYCLTCG-SD-----KKIKLWNPYRNLLLKT--YGGHAHEVNDATAACDSSQIASGASD-----KSVILWEVTTGQ 88 (341)
Q Consensus 24 ~~~~l~t~~-~d-----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~ 88 (341)
++.+++.|+ .+ ..+.+||+.+.+-... +...... .++ ...++..++.|+.+ ..+.+||+.+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~-~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRY-VAS-VSLHDRIYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBS-CEE-EEETTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhcc-ccE-EEECCEEEEEcCCCCCccCceEEEEECCCCC
Confidence 456677777 33 3688999877653221 2111111 122 22366777777754 468899988766
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0025 Score=50.63 Aligned_cols=63 Identities=8% Similarity=0.065 Sum_probs=34.8
Q ss_pred CCCEEEEecCC-----CcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CC-----cEEEEEcccc
Q psy17863 263 KDSQIFCGSSD-----GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GN-----NVKLWTAEED 327 (341)
Q Consensus 263 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~-----~i~vw~~~~~ 327 (341)
++++++.|+.+ ..+.+||+.+.+-. .+........-.+++ .-++++++.|+ ++ .+.+||+.+.
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWR-QVADMNMCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEE-EECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEe-eCCCCCCccccCeEE-EECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 56777777764 36888988765432 222101111111122 23677888877 53 4788888754
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0048 Score=49.13 Aligned_cols=63 Identities=13% Similarity=0.049 Sum_probs=35.1
Q ss_pred CCEEEEEeC--CCeEEEEcCCCcceeeE--ecCcccceeEEEEecCCCEEEEecCC----CcEEEEECCCCce
Q psy17863 25 GSYCLTCGS--DKKIKLWNPYRNLLLKT--YGGHAHEVNDATAACDSSQIASGASD----KSVILWEVTTGQP 89 (341)
Q Consensus 25 ~~~l~t~~~--dg~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iw~~~~~~~ 89 (341)
+.+++.|+. ...+.+||..+.+-... +......-..+ .-++..++.|+.+ ..+.+||..+++-
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W 82 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACV--FWDNVVYILGGSQLFPIKRMDCYNVVKDSW 82 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEE--EETTEEEEECCBSSSBCCEEEEEETTTTEE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEE--EECCEEEEEeCCCCCCcceEEEEeCCCCeE
Confidence 335556664 35788999877653221 21111111222 2366677777754 5688888877653
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0028 Score=50.33 Aligned_cols=97 Identities=7% Similarity=0.062 Sum_probs=65.1
Q ss_pred CCeEEEEecc---ccceeeeec--Cccc---------ceeEEEEEeCCCCCEEEEecCC-CcEEEEeeeCCCceEEEEee
Q psy17863 229 DECLRLFDKA---TGELLEEYK--GHKS---------GDFRIECCLDSKDSQIFCGSSD-GKIYKWQLVDSSQISTLIHS 293 (341)
Q Consensus 229 d~~i~i~d~~---~~~~~~~~~--~~~~---------~~~~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~ 293 (341)
+..|..||+. +++.+.... .... .-....++.+++|+..++++.. +.|...+. +++.+..+...
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p-dG~~~~~~~~~ 177 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA-DGKTVSTFAWE 177 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT-TSCCEEEEEEC
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC-CCCEEeeeeec
Confidence 5678888888 676654433 1111 1124455899999999988887 88777774 34444333210
Q ss_pred ----eeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 294 ----VGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 294 ----~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
......+.++++|+|..|++.. ++.+..+|+..
T Consensus 178 ~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 178 SGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 1122367999999999999998 99999999773
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0084 Score=48.83 Aligned_cols=53 Identities=6% Similarity=0.019 Sum_probs=34.8
Q ss_pred CCCCEEEEecCCCcEEEEeeeCCCceE---EEEeeeeccceEEEEEcCCCcEEEEeC
Q psy17863 262 SKDSQIFCGSSDGKIYKWQLVDSSQIS---TLIHSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 262 ~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
.+|.++++....+.|...++.....+. .+.. .....+..+++.|||.++++..
T Consensus 275 ~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~-~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 275 LRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK-NVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp GTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT-TTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcEEEEEcCCCEEEEEEECCCCcccceeeecc-CCCCCeeEEEECCCCcEEEEEe
Confidence 467777777777888888877532222 2210 1235789999999998777664
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.01 Score=48.82 Aligned_cols=238 Identities=13% Similarity=0.164 Sum_probs=142.0
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC-Cceeeeeccc
Q psy17863 18 AVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT-GQPVRRWREH 96 (341)
Q Consensus 18 ~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~ 96 (341)
+.-.+|..+.+|.=. ..++.|+|+++.+.++.+.-.. .|.-=.|-.+. .|+..+ +..|+-|+++. ..+.+.+..|
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecc
Confidence 344577777777654 6799999999999888887444 55555665443 444443 35699999974 3455555544
Q ss_pred ----CccEEEEEEcCCCcEEEEecC-------CCeEEEEEecCCCCcCeEE-------eecC---CCceEEE-eec---c
Q psy17863 97 ----ASKVTCVKFNEDSSVVISGSQ-------DNTVMMWDVKSRSHHPIQC-------CLDS---KDSQIFC-GSS---D 151 (341)
Q Consensus 97 ----~~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~-------~~~~---~~~~~~~-~~~---~ 151 (341)
...|..-..+++.++++..+- .|.+.+|..+.+....+.. .... ....+++ +.. .
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 225 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 356777788888888775442 3677788877654322110 0000 0111222 111 2
Q ss_pred CeEEEEEccCC-cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCC
Q psy17863 152 GKIYKWQLVDS-SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDE 230 (341)
Q Consensus 152 g~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 230 (341)
+++++.++... .....+. .....+-+.|+. ..+-..++..++....++.-+.-|
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~-----kk~vdv~fppe~--------------------~~DFPvamqvs~kygviyviTK~G 280 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFP-----KKAVDVFFPPEA--------------------QNDFPVAMQISEKHDVVFLITKYG 280 (494)
T ss_dssp CEEEEEECSCCCTTCCCCC-----CEEEECCCCTTS--------------------TTCCEEEEEEETTTTEEEEEETTS
T ss_pred cEEEEEEcCCCccCCCCcc-----ceeeeeeCCccc--------------------ccCceeEEEecccCCEEEEEecCc
Confidence 45665555332 0000010 001222222221 234456778888888899999999
Q ss_pred eEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc
Q psy17863 231 CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 286 (341)
Q Consensus 231 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (341)
.+++||++++.++..-+-....+... +......=++.....|.|.--.+.+...
T Consensus 281 ~i~lyDleTgt~i~~nrIs~~~iF~t--~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 281 YIHLYDLETGTCIYMNRISGETIFVT--APHEATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEE--EEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred eEEEEecccceeeeeecccCCceEEe--cccCCCCcEEEEccCceEEEEEEccccc
Confidence 99999999999988777666666554 4444444555556777777766655543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.017 Score=50.98 Aligned_cols=306 Identities=10% Similarity=0.028 Sum_probs=167.5
Q ss_pred CcEEEEEEccCCCEEEEEe--CCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEe-cCCCcEEEEECCCCcee
Q psy17863 14 GAIRAVRFNVDGSYCLTCG--SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG-ASDKSVILWEVTTGQPV 90 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~--~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~ 90 (341)
.....|++.|...+|.... ..+.|...++..... ..+-..-.....++++++++.|..+ ...+.|...++.....
T Consensus 123 ~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~- 200 (628)
T 4a0p_A 123 DSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR- 200 (628)
T ss_dssp CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred CCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-
Confidence 4567899998554555443 256787777654433 3332344567899999977766655 4567899999865433
Q ss_pred eeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCc---------C------------------------e-EE
Q psy17863 91 RRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH---------P------------------------I-QC 136 (341)
Q Consensus 91 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---------~------------------------~-~~ 136 (341)
..+.........+++.. +..+++-...+.|...|..+++.. + . .|
T Consensus 201 ~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C 279 (628)
T 4a0p_A 201 EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLC 279 (628)
T ss_dssp EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEE
T ss_pred EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhh
Confidence 33333333455777765 444455445677777775443210 0 0 01
Q ss_pred eecCCCce----------------------EEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-
Q psy17863 137 CLDSKDSQ----------------------IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC- 193 (341)
Q Consensus 137 ~~~~~~~~----------------------~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 193 (341)
...+.+.+ ++.-+....|+-..+.................+..+.+.+.+..+..+.
T Consensus 280 ~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~ 359 (628)
T 4a0p_A 280 LAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDS 359 (628)
T ss_dssp EEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEET
T ss_pred hcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEec
Confidence 11110110 1111112233333332211111111111224477889988776666554
Q ss_pred -CCceEEEEccccc-------------CCCCeEEEEEccCCCEE-EEeecCCeEEEEeccccceeeeec-CcccceeEEE
Q psy17863 194 -GNNVKLWTAEEDY-------------GQEPIVDACFTRDCQCI-LTCSTDECLRLFDKATGELLEEYK-GHKSGDFRIE 257 (341)
Q Consensus 194 -~~~i~~~~~~~~~-------------~~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~ 257 (341)
.+.|..++..... .......+++.+.++.| ++-+..+.|.+.++. |+....+. ........+
T Consensus 360 ~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~i- 437 (628)
T 4a0p_A 360 RQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAV- 437 (628)
T ss_dssp TTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEE-
T ss_pred CcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeE-
Confidence 3566666654322 12356789999876544 566667889999986 55444432 222334455
Q ss_pred EEeCC-CCCEEEEecCCC--cEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC--CCcEEEEEcccc
Q psy17863 258 CCLDS-KDSQIFCGSSDG--KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEED 327 (341)
Q Consensus 258 ~~~~~-~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~~ 327 (341)
+++| .|.++++-.... .|...++ +|.....+.. ..-...+.+++++++..|..+. .+.|...+++..
T Consensus 438 -avdp~~g~ly~tD~g~~~~~I~r~~~-dG~~~~~l~~-~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~ 509 (628)
T 4a0p_A 438 -VVNPEKGYMYFTNLQERSPKIERAAL-DGTEREVLFF-SGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGA 509 (628)
T ss_dssp -EEETTTTEEEEEEEETTEEEEEEEET-TSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred -EEecCCCeEEEeecCCCCCeEEEEeC-CCCCcEEEEe-ccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence 7888 454444432222 5666554 3544444442 2334578999999877776665 678888888654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0072 Score=47.92 Aligned_cols=103 Identities=13% Similarity=0.140 Sum_probs=54.4
Q ss_pred CCCEEEEeecC-----CeEEEEeccccce--eeeecCcccceeEEEEEeCCCCCEEEEecCC-----CcEEEEeeeCCCc
Q psy17863 219 DCQCILTCSTD-----ECLRLFDKATGEL--LEEYKGHKSGDFRIECCLDSKDSQIFCGSSD-----GKIYKWQLVDSSQ 286 (341)
Q Consensus 219 ~~~~l~~~~~d-----~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 286 (341)
++++++.|+.+ ..+.+||+.+.+- +..+....... .+ + ..++++++.|+.+ ..+.+||+.+.+-
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~--~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 234 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGA-GV--A-LLNDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSC-EE--E-EETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccc-eE--E-EECCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence 67777777654 3588899876543 22222111111 11 1 1256677777764 4688999876543
Q ss_pred eEEEEeeeeccceEEEEEcCCCcEEEEeC-C-----CcEEEEEcccc
Q psy17863 287 ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-G-----NNVKLWTAEED 327 (341)
Q Consensus 287 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~vw~~~~~ 327 (341)
...-...........+. -++++++.|+ + ..+.+||+++.
T Consensus 235 ~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 235 TTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp EEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred EECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 22211101111122222 3677888877 5 35778887654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.03 Score=50.80 Aligned_cols=99 Identities=13% Similarity=0.033 Sum_probs=54.2
Q ss_pred EEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEE-EecCCCcEEEEECCCC----ceeeeecccCccEE
Q psy17863 27 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKSVILWEVTTG----QPVRRWREHASKVT 101 (341)
Q Consensus 27 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~----~~~~~~~~~~~~v~ 101 (341)
+|+.+. ...|+..++.......... ....+..++|.+....|+ +-...+.|+.+++... .....+........
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 444433 4568888876655444333 445678899998555544 5455678888888642 22222222334455
Q ss_pred EEEEcCCCcEE-EEecCCCeEEEEEec
Q psy17863 102 CVKFNEDSSVV-ISGSQDNTVMMWDVK 127 (341)
Q Consensus 102 ~~~~~~~~~~l-~~~~~d~~i~iwd~~ 127 (341)
.|++.+.+..| ++-...+.|.+.++.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 67777655333 343444555555544
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.011 Score=47.01 Aligned_cols=64 Identities=16% Similarity=0.106 Sum_probs=35.8
Q ss_pred cCCCEEEEEeCC----CeEEEEcCCCcceeeE--ecCcccceeEEEEecCCCEEEEecC----C-----CcEEEEECCCC
Q psy17863 23 VDGSYCLTCGSD----KKIKLWNPYRNLLLKT--YGGHAHEVNDATAACDSSQIASGAS----D-----KSVILWEVTTG 87 (341)
Q Consensus 23 ~~~~~l~t~~~d----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~----d-----g~i~iw~~~~~ 87 (341)
-++.+++.|+.+ ..+.+||+.+.+-... +...... .+++. .++.+++.|+. + ..+.+||+.+.
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 356777777742 3688999876653221 1111111 12222 26667777765 2 45888888776
Q ss_pred c
Q psy17863 88 Q 88 (341)
Q Consensus 88 ~ 88 (341)
+
T Consensus 101 ~ 101 (308)
T 1zgk_A 101 Q 101 (308)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.012 Score=48.30 Aligned_cols=101 Identities=13% Similarity=0.240 Sum_probs=71.6
Q ss_pred eEEEEEECCCCceEEEeCCCceEEEEccccc-------------------------CCCCeEEEEEccC---CCEEEEee
Q psy17863 176 VVNSLCSHPTRKHIMSACGNNVKLWTAEEDY-------------------------GQEPIVDACFTRD---CQCILTCS 227 (341)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------------~~~~i~~~~~~~~---~~~l~~~~ 227 (341)
.+..+..+|+|.+++..+...+.+..+.... ...+|..+.|+|- +..|++-.
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt 146 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK 146 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence 4677999999999999988888887766211 2467999999994 56899999
Q ss_pred cCCeEEEEeccccc--eeeeecC---------cccceeEEEEEeCCCCCEEEE--ecCCCcEEEE
Q psy17863 228 TDECLRLFDKATGE--LLEEYKG---------HKSGDFRIECCLDSKDSQIFC--GSSDGKIYKW 279 (341)
Q Consensus 228 ~d~~i~i~d~~~~~--~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~iw 279 (341)
.|+.|++||+.... +. .+.. ....+.. ++|.+++-.|+. .+..|.|+-.
T Consensus 147 sD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S--~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 147 EDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD--LEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE--EEECTTSSCEEEEECTTSCEEEEE
T ss_pred cCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE--EEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999999987521 22 2221 1133444 488887776666 4478888754
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.02 Score=47.06 Aligned_cols=110 Identities=15% Similarity=0.256 Sum_probs=74.6
Q ss_pred ccCCCEEEEEeCCCeEEEEcCCCcceeeEecCc----ccceeEEEEecCCCEEEEecCCCcEEEEECCCCce--------
Q psy17863 22 NVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGH----AHEVNDATAACDSSQIASGASDKSVILWEVTTGQP-------- 89 (341)
Q Consensus 22 ~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------- 89 (341)
..+|..++.+- ++.||.-++......+.++.. -..|..+..+|+|++||..+. ..|.|-.+..+..
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence 34566566544 577888777654445555432 236888999999999998765 5699988873321
Q ss_pred ----eeeecc------cCccEEEEEEcC---CCcEEEEecCCCeEEEEEecCCCCcC
Q psy17863 90 ----VRRWRE------HASKVTCVKFNE---DSSVVISGSQDNTVMMWDVKSRSHHP 133 (341)
Q Consensus 90 ----~~~~~~------~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~ 133 (341)
.+.++- ...+|..+.|+| .+..|++-..|+.|++||+......+
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P 163 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKP 163 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCC
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCC
Confidence 112221 246799999999 45678888889999999988744333
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0052 Score=52.06 Aligned_cols=147 Identities=12% Similarity=0.191 Sum_probs=85.2
Q ss_pred EEEEEECCC-CceEEEeCC--CceEEEEccccc----------CCCCeEEEEE-------ccCCCEEEEeecCC------
Q psy17863 177 VNSLCSHPT-RKHIMSACG--NNVKLWTAEEDY----------GQEPIVDACF-------TRDCQCILTCSTDE------ 230 (341)
Q Consensus 177 ~~~~~~~~~-~~~~~~~~~--~~i~~~~~~~~~----------~~~~i~~~~~-------~~~~~~l~~~~~d~------ 230 (341)
...++++|. +..|.++.. +.|++.|+.... .......++| +++++.|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 567777773 443433332 456666655532 1234788999 99999666665543
Q ss_pred -eEEEEeccc-ccee-----eeecCcccceeEEEEEeCCC-CCEEEEecCCCcEEEEeee-------CCCc---------
Q psy17863 231 -CLRLFDKAT-GELL-----EEYKGHKSGDFRIECCLDSK-DSQIFCGSSDGKIYKWQLV-------DSSQ--------- 286 (341)
Q Consensus 231 -~i~i~d~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~-------~~~~--------- 286 (341)
.+.+++... +... ..+.... ....+ +++|+ +.++++-..++.|+.+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~gi--avdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGA--TIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEES-CCCCE--EECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred ceEEEEecCCCCceeecccceeeccCC-CceEE--EEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266665333 1221 1221111 11233 67884 4555566678889999987 5553
Q ss_pred --eEEEEeeeeccceEEEEEcCCCcEEEEeC--CCcEEEEEccc
Q psy17863 287 --ISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEE 326 (341)
Q Consensus 287 --~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~ 326 (341)
...+...+.......++|+|+|++|..+. ...|+.++.+.
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 22322112334568999999999655544 77888866543
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.025 Score=46.67 Aligned_cols=255 Identities=13% Similarity=0.148 Sum_probs=149.2
Q ss_pred CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEE
Q psy17863 34 DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI 113 (341)
Q Consensus 34 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 113 (341)
+.+|.|-|+.++..+.+-. -.--+.-.+|..+.++.-. ..++.++|+++.+.+..+.- ..+|.-=.|-.+. .|+
T Consensus 47 ~~~vvIiDl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~~-~l~ 120 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVA 120 (494)
T ss_dssp CCEEEEEETTSTTSCEEEE---CCCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEETT-EEE
T ss_pred CCeEEEEECCCCCcceecc---cccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCCC-eEE
Confidence 3478888887765543222 1123445688888777655 67899999999888877764 3456556665433 444
Q ss_pred EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC
Q psy17863 114 SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 193 (341)
Q Consensus 114 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (341)
..+ +..|.-|++.... .-++++|.... .....|.....+++.++++..+
T Consensus 121 lVT-~taVyHWsi~~~s---------------------~P~kvFdR~~~---------L~~~QIInY~~d~~~kW~~l~G 169 (494)
T 1bpo_A 121 LVT-DNAVYHWSMEGES---------------------QPVKMFDRHSS---------LAGCQIINYRTDAKQKWLLLTG 169 (494)
T ss_dssp EEC-SSEEEEEESSSSC---------------------CCEEEEECCGG---------GTTCEEEEEEECTTSSEEEEEE
T ss_pred EEc-CCeeEEecccCCC---------------------Cchhheecchh---------cccceEEEEEECCCCCeEEEEe
Confidence 444 4578889886522 12333332211 1234566777777777766543
Q ss_pred --------CCceEEEEccccc------CCCCeEEEEEccC---CCEEEEeec---CCeEEEEecccc---ce------ee
Q psy17863 194 --------GNNVKLWTAEEDY------GQEPIVDACFTRD---CQCILTCST---DECLRLFDKATG---EL------LE 244 (341)
Q Consensus 194 --------~~~i~~~~~~~~~------~~~~i~~~~~~~~---~~~l~~~~~---d~~i~i~d~~~~---~~------~~ 244 (341)
.|.+.+|..+... |......+.+..+ ...++.+.. .+.+++.++... .. +.
T Consensus 170 I~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vd 249 (494)
T 1bpo_A 170 ISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD 249 (494)
T ss_dssp EEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEE
T ss_pred ecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeee
Confidence 2578888887654 2122222222111 122333332 268888887432 11 11
Q ss_pred e-ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEE
Q psy17863 245 E-YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLW 322 (341)
Q Consensus 245 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw 322 (341)
. +......-..+.+..++.-..++.-+.-|.|++||++++.++..-+ -...+|...+-+....-++... .|.|.--
T Consensus 250 v~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr--Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v 327 (494)
T 1bpo_A 250 VFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR--ISGETIFVTAPHEATAGIIGVNRKGQVLSV 327 (494)
T ss_dssp CCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEEETTTTEEEEEETTCEEEEE
T ss_pred eeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec--ccCCceEEecccCCCCcEEEEccCceEEEE
Confidence 1 1111122344555778888889999999999999999999988877 4556666555555444444444 7776665
Q ss_pred Ecccc
Q psy17863 323 TAEED 327 (341)
Q Consensus 323 ~~~~~ 327 (341)
.+++.
T Consensus 328 ~v~e~ 332 (494)
T 1bpo_A 328 CVEEE 332 (494)
T ss_dssp EECTT
T ss_pred EEccc
Confidence 55543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.02 Score=54.45 Aligned_cols=235 Identities=12% Similarity=0.160 Sum_probs=134.5
Q ss_pred EccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCC-Cceeeeeccc---
Q psy17863 21 FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTT-GQPVRRWREH--- 96 (341)
Q Consensus 21 ~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~~--- 96 (341)
.+|..+.+|.=. ..++.|+|+++...++.+.-. .+|.-=.|-.+. .|+..+. ..|.-|++.. ..+.+.+..|
T Consensus 73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~-~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~L 148 (1630)
T 1xi4_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDRHSSL 148 (1630)
T ss_pred cCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCC-eeEEEcC-CeEEEeccCCCCccHHHHhcchhc
Confidence 466666666544 678999999988888777643 445555565333 4443333 4699999964 3455555544
Q ss_pred -CccEEEEEEcCCCcEEEEec-------CCCeEEEEEecCCCCcCeEE----------eecCCCceEEEeec----cCeE
Q psy17863 97 -ASKVTCVKFNEDSSVVISGS-------QDNTVMMWDVKSRSHHPIQC----------CLDSKDSQIFCGSS----DGKI 154 (341)
Q Consensus 97 -~~~v~~~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~~----------~~~~~~~~~~~~~~----~g~i 154 (341)
...|..-..+++.++++..| -.|.+.+|..+.+....+.. -.......+++-.. .+++
T Consensus 149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kL 228 (1630)
T 1xi4_A 149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 228 (1630)
T ss_pred ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceE
Confidence 45677777788888777543 34788888887654322211 00111122322211 2566
Q ss_pred EEEEccCC-cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEE
Q psy17863 155 YKWQLVDS-SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLR 233 (341)
Q Consensus 155 ~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 233 (341)
++.++... .....+. .....+-+.|+. ...-..++..++....+..-+.-|.+.
T Consensus 229 hi~Ei~~~~~~~~~f~-----kk~~~~~~~~~~--------------------~~Dfpv~~~vs~k~g~iy~itk~G~~~ 283 (1630)
T 1xi4_A 229 HIIEVGTPPTGNQPFP-----KKAVDVFFPPEA--------------------QNDFPVAMQISEKHDVVFLITKYGYIH 283 (1630)
T ss_pred EEEecCCCccCCCCCc-----cccccccCCccc--------------------ccCcceEEEeccccCEEEEEecCceEE
Confidence 66666432 1101110 001222222221 123345677788778888889999999
Q ss_pred EEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCc
Q psy17863 234 LFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 286 (341)
Q Consensus 234 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 286 (341)
+||+.++.++..-+-....+... +......-++.....|.|.--.+.....
T Consensus 284 ~~d~~t~~~i~~~ris~~~iF~~--~~~~~~~g~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 284 LYDLETGTCIYMNRISGETIFVT--APHEATAGIIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred EEecccchhhhhccccCCceEEe--ccCCCCCceEEEcCCceEEEEEEccchh
Confidence 99999999877666555555544 3333333344444666666665554443
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.023 Score=46.03 Aligned_cols=103 Identities=9% Similarity=0.028 Sum_probs=62.7
Q ss_pred CCCeEEEEEccCCCEEEEee-----------------cCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEe
Q psy17863 208 QEPIVDACFTRDCQCILTCS-----------------TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 270 (341)
Q Consensus 208 ~~~i~~~~~~~~~~~l~~~~-----------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (341)
-...+.+.+.++|.+.++.. ..|.|..+|. ++. ..+...-.....+ +++||++.|+.+
T Consensus 164 ~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGi--a~spDg~~lYva 238 (355)
T 3sre_A 164 LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGI--NISPDGKYVYIA 238 (355)
T ss_dssp CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEE--EECTTSSEEEEE
T ss_pred CCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEeecCCcccCcc--eECCCCCEEEEE
Confidence 34678899999999777654 1245555554 222 2221111222344 899999877765
Q ss_pred -cCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcC-CCcEEEEeC
Q psy17863 271 -SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP-TRKHIMSAC 315 (341)
Q Consensus 271 -~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 315 (341)
+..+.|+.|++.....+............-.+++.+ +|.+.+++.
T Consensus 239 dt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 239 ELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred eCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEec
Confidence 457889999986432222211112245678889999 599888665
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.033 Score=45.36 Aligned_cols=103 Identities=14% Similarity=0.101 Sum_probs=61.4
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc-eeeEec---CcccceeEEEEecC---CCEEEEecC----C----C
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL-LLKTYG---GHAHEVNDATAACD---SSQIASGAS----D----K 77 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----g 77 (341)
-.....++|.|+|+++++ ..+|.|++++. +++ .+..+. ........++++|+ +..|.++.. + .
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 355789999999985554 66799999973 444 222221 12346789999997 445554432 2 5
Q ss_pred cEEEEECCCC--c-----ee-eeecc-cCccEEEEEEcCCCcEEEEecC
Q psy17863 78 SVILWEVTTG--Q-----PV-RRWRE-HASKVTCVKFNEDSSVVISGSQ 117 (341)
Q Consensus 78 ~i~iw~~~~~--~-----~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 117 (341)
.|..|+.... . .+ ..+.. .......++|.|||.+.++.+.
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECC
Confidence 6777776543 1 11 11221 1112356899999986666543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.021 Score=45.80 Aligned_cols=103 Identities=10% Similarity=0.174 Sum_probs=67.6
Q ss_pred CEEEEecCCCcEEEEECCCCceeeeeccc-CccEEEEEEc--C-CCcEEEEe-cCCCeEEEEEecCCCCc----------
Q psy17863 68 SQIASGASDKSVILWEVTTGQPVRRWREH-ASKVTCVKFN--E-DSSVVISG-SQDNTVMMWDVKSRSHH---------- 132 (341)
Q Consensus 68 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~--~-~~~~l~~~-~~d~~i~iwd~~~~~~~---------- 132 (341)
..+++++.||.|.-.|.++|+...+++.. ..++....-. + ++..++.. +.||.+..++..++...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999998887653 1222221100 1 22333333 57888888876654311
Q ss_pred --CeEE--eec-------CCCceEEEeeccCeEEEEEccCCcceeeeEe
Q psy17863 133 --PIQC--CLD-------SKDSQIFCGSSDGKIYKWQLVDSSQISTLIH 170 (341)
Q Consensus 133 --~~~~--~~~-------~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~ 170 (341)
+... ... ..++.+++|+.+|++...|+.+++.+..+..
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 1110 000 1677899999999999999999999887754
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.077 Score=48.17 Aligned_cols=296 Identities=11% Similarity=0.108 Sum_probs=161.8
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec-------CcccceeEEEEecCCCEEEEecCCCcEEEEECCC
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-------GHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 86 (341)
..|.++...++|.+.+ |+.+ -+.+++..+++...... -....|.++....++. |..|+..| +.++...
T Consensus 232 ~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~- 306 (758)
T 3ott_A 232 NSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYN- 306 (758)
T ss_dssp EEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCC-
T ss_pred CeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccC-
Confidence 4588888887887554 4444 47888876654322111 1224588888777765 44555556 5554332
Q ss_pred Cceeeeec-------ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC-----------------CcCeEEeecCCC
Q psy17863 87 GQPVRRWR-------EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-----------------HHPIQCCLDSKD 142 (341)
Q Consensus 87 ~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-----------------~~~~~~~~~~~~ 142 (341)
.. ...+. .....|.++.-..+|.+-+ |+.+| +..++..++. ...+.++....+
T Consensus 307 ~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWi-Gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~ 383 (758)
T 3ott_A 307 SA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWF-GGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKE 383 (758)
T ss_dssp C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEE-EETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTT
T ss_pred Cc-eeEEecccCCCCCCCceEEEEEEcCCCCEEE-eeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCC
Confidence 21 11111 1234688888887776544 44454 5555543211 112344444556
Q ss_pred ceEEEeeccCeEEEEEccCCcceeeeEeee----cCceEEEEEECCCCceEEEeCCCceEEEEcccc-------------
Q psy17863 143 SQIFCGSSDGKIYKWQLVDSSQISTLIHSV----GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED------------- 205 (341)
Q Consensus 143 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------------- 205 (341)
+.+..|+ ++-+..+|..+.+......... ....+.++...+++.+.+.+.++.+..++....
T Consensus 384 g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~ 462 (758)
T 3ott_A 384 QQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQN 462 (758)
T ss_dssp SCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEE
T ss_pred CCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccc
Confidence 6677777 4578889987654332211111 224578888888888888777777888875420
Q ss_pred ------cCCCCeEEEEEccCCCEEEE-eecCCeEEEEeccccceeeeecC-c--ccceeEEEEEeCCCCCEEEEecCCCc
Q psy17863 206 ------YGQEPIVDACFTRDCQCILT-CSTDECLRLFDKATGELLEEYKG-H--KSGDFRIECCLDSKDSQIFCGSSDGK 275 (341)
Q Consensus 206 ------~~~~~i~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~dg~ 275 (341)
.....|.++...++|++.+. ++.+ -|..+|..+++....... . ...+.++ ..+.+|.+.+ |+..|
T Consensus 463 ~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~-Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i--~~d~~g~lWi-gt~~G- 537 (758)
T 3ott_A 463 YSVHNGLSGMFINQIIPDNEGNVWVLLYNNK-GIDKINPRTREVTKLFADELTGEKSPNYL--LCDEDGLLWV-GFHGG- 537 (758)
T ss_dssp ECGGGTCSCSCEEEEEECTTSCEEEEETTCS-SEEEEETTTTEEEEECTTTSCGGGCEEEE--EECTTSCEEE-EETTE-
T ss_pred cccccccccceeeeEEEcCCCCEEEEccCCC-CcEEEeCCCCceEEecCCCcCCCcccceE--EECCCCCEEE-EecCc-
Confidence 12235888888999987663 4444 488889876654332111 1 1233444 5667775554 44444
Q ss_pred EEEEeeeCCCceEEEE-eeeeccceEEEEEcCCCcEEEEeCCCcEEEEEccc
Q psy17863 276 IYKWQLVDSSQISTLI-HSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 326 (341)
Q Consensus 276 i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~ 326 (341)
+..++..+++... +. .......|.++... +|.+.+++..| +..++..+
T Consensus 538 l~~~~~~~~~~~~-~~~~gl~~~~i~~i~~~-~g~lWi~t~~G-l~~~~~~~ 586 (758)
T 3ott_A 538 VMRINPKDESQQS-ISFGSFSNNEILSMTCV-KNSIWVSTTNG-LWIIDRKT 586 (758)
T ss_dssp EEEECC--CCCCB-CCCCC---CCEEEEEEE-TTEEEEEESSC-EEEEETTT
T ss_pred eEEEecCCCceEE-ecccCCCccceEEEEEC-CCCEEEECCCC-eEEEcCCC
Confidence 7788865543221 11 00112456666653 55544444343 55555543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.036 Score=44.20 Aligned_cols=61 Identities=7% Similarity=0.084 Sum_probs=33.8
Q ss_pred EEEEEeCCCeEEEEcCCCcceee-EecCcccceeEEEEecCCCEEEEecC----C-------CcEEEEECCCCce
Q psy17863 27 YCLTCGSDKKIKLWNPYRNLLLK-TYGGHAHEVNDATAACDSSQIASGAS----D-------KSVILWEVTTGQP 89 (341)
Q Consensus 27 ~l~t~~~dg~i~iw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~----d-------g~i~iw~~~~~~~ 89 (341)
+++.|+ ..+.+||+.+++-.. .+..............++..++.|+. + ..+..||..+++-
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 79 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW 79 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence 344555 579999988876432 12211122233333457777777773 1 1267788877653
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0085 Score=44.42 Aligned_cols=104 Identities=11% Similarity=-0.028 Sum_probs=65.6
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCccee------eEec-CcccceeEEEEecCCCEEEEecCCCcEEEEECCC
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLL------KTYG-GHAHEVNDATAACDSSQIASGASDKSVILWEVTT 86 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~------~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 86 (341)
..+..++|+|+|.+.++ .+|.+.-.+..+.+.. ..+- .--....++.|.|+|.+.++ .||.|.-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 36779999999986666 6787777776552211 1111 01112578999999988777 569888777533
Q ss_pred Cceee------ee-cccCccEEEEEEcCCCcEEEEecCCCeEEE
Q psy17863 87 GQPVR------RW-REHASKVTCVKFNEDSSVVISGSQDNTVMM 123 (341)
Q Consensus 87 ~~~~~------~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 123 (341)
..... .+ ..--..+..+.+.|+|.+.+.. |+.+.-
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 21111 00 1112567999999999876666 777543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.076 Score=46.88 Aligned_cols=305 Identities=6% Similarity=0.013 Sum_probs=164.2
Q ss_pred cEEEEEEccCCCEE-EEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEec--CCCcEEEEECCCCceee
Q psy17863 15 AIRAVRFNVDGSYC-LTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA--SDKSVILWEVTTGQPVR 91 (341)
Q Consensus 15 ~v~~~~~~~~~~~l-~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~ 91 (341)
....+++.+.+..| ++-...+.|.+.++........+...-.....+++.|....|+... ..+.|...+++......
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE
Confidence 45678887655444 4545567889988765433222323345568999998655665554 25678888875443332
Q ss_pred eecccCccEEEEEEcCCCcEEEEe-cCCCeEEEEEecCCCCc--------CeEEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 92 RWREHASKVTCVKFNEDSSVVISG-SQDNTVMMWDVKSRSHH--------PIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 92 ~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
... .-.....++++++++.|+.+ ...+.|...|+...... +...... .+...++-...+.|...|..++
T Consensus 161 l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~-~~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 161 LVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQY-QDYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred EEC-CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEE-CCEEEEecCCCCEEEEEECCCC
Confidence 232 34567899999976666555 45678888888764431 1111111 2333334444677777776555
Q ss_pred cceeeeEeeec-----------------C-----ceEEEE----------EECC-------CC-------ceEEEeCCCc
Q psy17863 163 SQISTLIHSVG-----------------K-----AVVNSL----------CSHP-------TR-------KHIMSACGNN 196 (341)
Q Consensus 163 ~~~~~~~~~~~-----------------~-----~~~~~~----------~~~~-------~~-------~~~~~~~~~~ 196 (341)
+....+..... . .....+ +..| ++ .+++.+....
T Consensus 239 ~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~ 318 (628)
T 4a0p_A 239 QNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSA 318 (628)
T ss_dssp CSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTE
T ss_pred CceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccce
Confidence 43322211000 0 000001 1111 11 2333333444
Q ss_pred eEEEEccccc---------CCCCeEEEEEccCCCEEEEe-ecCCeEEEEeccccceeeeecC------cccceeEEEEEe
Q psy17863 197 VKLWTAEEDY---------GQEPIVDACFTRDCQCILTC-STDECLRLFDKATGELLEEYKG------HKSGDFRIECCL 260 (341)
Q Consensus 197 i~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~ 260 (341)
|+-..+.... .-..+..++|.+....|+.. ...+.|+.+++........+.. .......+ ++
T Consensus 319 i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~gl--Av 396 (628)
T 4a0p_A 319 INRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDL--SI 396 (628)
T ss_dssp EEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEE--EE
T ss_pred EEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceE--Ee
Confidence 5444443221 12446788898865555544 3467788887654332222321 11234455 77
Q ss_pred CCCCCEE-EEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcC-CCcEEEEeC-CC--cEEEEEcc
Q psy17863 261 DSKDSQI-FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP-TRKHIMSAC-GN--NVKLWTAE 325 (341)
Q Consensus 261 ~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~--~i~vw~~~ 325 (341)
+..++.| ++-+..+.|.+.++ +|+....+.. .......++++.| .|.++.+-. .. .|...+++
T Consensus 397 D~~~~nLY~td~~~~~I~v~~~-~G~~~~~l~~-~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d 464 (628)
T 4a0p_A 397 DIYSRYIYWTCEATNVINVTRL-DGRSVGVVLK-GEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD 464 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEET-TSCEEEEEEE-CTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT
T ss_pred eccCCeEEEEcCCCCEEEEEEC-CCCeEEEEEe-CCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC
Confidence 7765544 46667788999986 4555555542 2345689999999 455444433 33 34444444
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.043 Score=43.49 Aligned_cols=66 Identities=18% Similarity=0.210 Sum_probs=37.4
Q ss_pred CCCEEEEEeCC----CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCC------CcEEEEECCCCce
Q psy17863 24 DGSYCLTCGSD----KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD------KSVILWEVTTGQP 89 (341)
Q Consensus 24 ~~~~l~t~~~d----g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw~~~~~~~ 89 (341)
++.+++.|+.+ ..+.+||+.+.+-...-..........+..-+++.++.|+.+ ..+.+||..+.+-
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 56677777754 678889987765332211111111111112267777777654 4588899887653
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.018 Score=45.60 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=34.9
Q ss_pred CCCEEEEEeCC-----CeEEEEcCCCcceeeE--ecCcccceeEEEEecCCCEEEEecCCC-----cEEEEECCCCce
Q psy17863 24 DGSYCLTCGSD-----KKIKLWNPYRNLLLKT--YGGHAHEVNDATAACDSSQIASGASDK-----SVILWEVTTGQP 89 (341)
Q Consensus 24 ~~~~l~t~~~d-----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~ 89 (341)
++.+++.|+.+ ..+.+||+.+.+-... +...... .+++. -+++.++.|+.++ .+.+||+.+.+-
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST-LGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEW 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc-eEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeE
Confidence 56677777754 3588888876543222 1111111 12222 2667777776543 477788776643
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.059 Score=43.80 Aligned_cols=92 Identities=11% Similarity=0.126 Sum_probs=46.5
Q ss_pred CCCEEEEEeC-CCeEEEEcCCC--cc--eeeEecCcccceeEEEEecCCCEEEEecC-C---------CcEEEEECCCCc
Q psy17863 24 DGSYCLTCGS-DKKIKLWNPYR--NL--LLKTYGGHAHEVNDATAACDSSQIASGAS-D---------KSVILWEVTTGQ 88 (341)
Q Consensus 24 ~~~~l~t~~~-dg~i~iw~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d---------g~i~iw~~~~~~ 88 (341)
++++++.|+. ...+.+||+.+ .+ .+..+......-.+++. -++++++.|+. + ..+.+||+.+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 6667777765 34688888864 22 22222211111122222 25677777765 2 468899988765
Q ss_pred eee--eec-ccCccEEEEEEcCCCcEEEEecCC
Q psy17863 89 PVR--RWR-EHASKVTCVKFNEDSSVVISGSQD 118 (341)
Q Consensus 89 ~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~d 118 (341)
-.. .+. .....-..+. .++++++.|+.+
T Consensus 98 W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp EEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred EEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 322 121 1111122222 456777777754
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.096 Score=42.56 Aligned_cols=63 Identities=5% Similarity=-0.058 Sum_probs=40.4
Q ss_pred CCCEEEEecCCCcEEEEeeeCCCceEEEEee-eeccceEEEEEcCCCcEEEEeCCCcEEEEEcc
Q psy17863 263 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHS-VGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 325 (341)
Q Consensus 263 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~ 325 (341)
++.++++.-..+.|...++..++........ .....+..+++.|||.++++..+..=+||.+.
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~I~ri~ 351 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGELLKVS 351 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEEEEEEE
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCEEEEEe
Confidence 5677777777888888888765433322210 12347899999999987776442333566654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.094 Score=41.83 Aligned_cols=61 Identities=8% Similarity=0.071 Sum_probs=32.0
Q ss_pred EEEEEeCCCeEEEEcCCCcceeeE-ecCcccceeEEEEecCCCEEEEecC----CC-------cEEEEECCCCce
Q psy17863 27 YCLTCGSDKKIKLWNPYRNLLLKT-YGGHAHEVNDATAACDSSQIASGAS----DK-------SVILWEVTTGQP 89 (341)
Q Consensus 27 ~l~t~~~dg~i~iw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~----dg-------~i~iw~~~~~~~ 89 (341)
+++.|+. .+..||+.+.+-... +..............++..++.|+. ++ .+..||..+++-
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W 90 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW 90 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE
Confidence 4445543 488999887764331 1111112222233456777777773 12 166778776543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.066 Score=39.77 Aligned_cols=125 Identities=10% Similarity=0.012 Sum_probs=74.6
Q ss_pred CCEEEEEeCCCeEEEEcCCCcc------eeeEecC-cccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccC
Q psy17863 25 GSYCLTCGSDKKIKLWNPYRNL------LLKTYGG-HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHA 97 (341)
Q Consensus 25 ~~~l~t~~~dg~i~iw~~~~~~------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 97 (341)
...|++...| +++.=...++. ...++-. .=..+..++|+|++.+.++ .+|.+.-.+..+.+.. .+.+..
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~ 79 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDND-NWMGRA 79 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC-CHHHHC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcc-cccccc
Confidence 4456666666 66555544433 1122211 1246889999999986666 6676666555442221 111112
Q ss_pred cc--------EEEEEEcCCCcEEEEecCCCeEEEEEecCCC---------------CcCeEEeecCCCceEEEeeccCeE
Q psy17863 98 SK--------VTCVKFNEDSSVVISGSQDNTVMMWDVKSRS---------------HHPIQCCLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 98 ~~--------v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------------~~~~~~~~~~~~~~~~~~~~~g~i 154 (341)
.. ..++.|.|+|.+.++ .||.|.-++..+.. -..+..+...+++.|.+.. ++.+
T Consensus 80 t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~l 156 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQF 156 (236)
T ss_dssp EEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEE
T ss_pred cEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcE
Confidence 22 378899999987777 56988877753321 1345667777777777777 7775
Q ss_pred EE
Q psy17863 155 YK 156 (341)
Q Consensus 155 ~~ 156 (341)
+-
T Consensus 157 yr 158 (236)
T 1tl2_A 157 YK 158 (236)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.1 Score=41.54 Aligned_cols=66 Identities=11% Similarity=0.056 Sum_probs=35.9
Q ss_pred EccCCCEEEEEeC-----C------CeEEEEcCCCcceee--EecCcccceeEEEEecCCCEEEEecCC--------CcE
Q psy17863 21 FNVDGSYCLTCGS-----D------KKIKLWNPYRNLLLK--TYGGHAHEVNDATAACDSSQIASGASD--------KSV 79 (341)
Q Consensus 21 ~~~~~~~l~t~~~-----d------g~i~iw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i 79 (341)
...+++.++.|+. . ..+.+||+.+.+-.. .+...... .+++.. +++.++.|+.+ ..+
T Consensus 42 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~ 119 (315)
T 4asc_A 42 VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL-FGLGEA-LNSIYVVGGREIKDGERCLDSV 119 (315)
T ss_dssp ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES-CEEEEE-TTEEEEECCEESSTTCCBCCCE
T ss_pred EEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc-eeEEEE-CCEEEEEeCCcCCCCCcccceE
Confidence 3457778888873 1 137788887765322 11111111 122222 56667777632 458
Q ss_pred EEEECCCCc
Q psy17863 80 ILWEVTTGQ 88 (341)
Q Consensus 80 ~iw~~~~~~ 88 (341)
.+||..+++
T Consensus 120 ~~~d~~~~~ 128 (315)
T 4asc_A 120 MCYDRLSFK 128 (315)
T ss_dssp EEEETTTTE
T ss_pred EEECCCCCc
Confidence 888987764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.35 Score=46.44 Aligned_cols=254 Identities=13% Similarity=0.159 Sum_probs=134.3
Q ss_pred CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEE
Q psy17863 34 DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI 113 (341)
Q Consensus 34 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 113 (341)
..+|.|-|+.++..+.+-. -.--+.-.+|..+.++.-. ..++.|+|+++.+.+..+.- ..+|.-=.|-.+. .|+
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~ 120 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVA 120 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeE
Confidence 3478888877765442211 1122344677777666654 67899999998877776653 4456666665433 344
Q ss_pred EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC
Q psy17863 114 SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 193 (341)
Q Consensus 114 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (341)
..+ +..|.-|++.... .|. +++|.. .......|..-..+++.++++..+
T Consensus 121 lVT-~~aVyHW~~~~~s-~P~--------------------k~fdR~---------~~L~~~QIinY~~d~~~kW~~l~g 169 (1630)
T 1xi4_A 121 LVT-DNAVYHWSMEGES-QPV--------------------KMFDRH---------SSLAGCQIINYRTDAKQKWLLLTG 169 (1630)
T ss_pred EEc-CCeEEEeccCCCC-ccH--------------------HHHhcc---------hhcccCeeEEeeeCCCCCeEEEEe
Confidence 443 3578888886421 111 111110 001123456666667777665433
Q ss_pred --------CCceEEEEccccc------CCCCeEEEEEc--c-CCCEEEEeec---CCeEEEEecccc---ce------ee
Q psy17863 194 --------GNNVKLWTAEEDY------GQEPIVDACFT--R-DCQCILTCST---DECLRLFDKATG---EL------LE 244 (341)
Q Consensus 194 --------~~~i~~~~~~~~~------~~~~i~~~~~~--~-~~~~l~~~~~---d~~i~i~d~~~~---~~------~~ 244 (341)
.|.+.+|..+... |......+.+. + ....++.+.. .+.+++.++... .+ +.
T Consensus 170 i~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~ 249 (1630)
T 1xi4_A 170 ISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD 249 (1630)
T ss_pred eccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcccccc
Confidence 2678888877643 11111111111 1 1122222211 267888887432 11 11
Q ss_pred e-ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEE
Q psy17863 245 E-YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLW 322 (341)
Q Consensus 245 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw 322 (341)
. +......-..+.+..++.-..++.-+.-|.|.++|+.++.++..-+ -...+|...+-++...-++... .|.|.--
T Consensus 250 ~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r--is~~~iF~~~~~~~~~g~~~vnr~G~vl~v 327 (1630)
T 1xi4_A 250 VFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR--ISGETIFVTAPHEATAGIIGVNRKGQVLSV 327 (1630)
T ss_pred ccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc--ccCCceEEeccCCCCCceEEEcCCceEEEE
Confidence 1 1111112233444677777788888999999999999998876655 3344444444333322233333 5555444
Q ss_pred Eccc
Q psy17863 323 TAEE 326 (341)
Q Consensus 323 ~~~~ 326 (341)
.+++
T Consensus 328 ~v~~ 331 (1630)
T 1xi4_A 328 CVEE 331 (1630)
T ss_pred EEcc
Confidence 4443
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.065 Score=42.54 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=35.1
Q ss_pred CCCEEEEEeC----C-----CeEEEEcCCCcceeeE--ecCcccceeEEEEecCCCEEEEecCC-----CcEEEEECCCC
Q psy17863 24 DGSYCLTCGS----D-----KKIKLWNPYRNLLLKT--YGGHAHEVNDATAACDSSQIASGASD-----KSVILWEVTTG 87 (341)
Q Consensus 24 ~~~~l~t~~~----d-----g~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~ 87 (341)
++++++.|+. + ..+.+||+.+.+-... +.........+. -+++.++.|+.+ ..+.+||+.+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCC
Confidence 5666777765 2 3588888876543221 111111112222 266777777643 45888888776
Q ss_pred ce
Q psy17863 88 QP 89 (341)
Q Consensus 88 ~~ 89 (341)
+-
T Consensus 148 ~W 149 (308)
T 1zgk_A 148 EW 149 (308)
T ss_dssp EE
T ss_pred eE
Confidence 43
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.16 Score=41.06 Aligned_cols=68 Identities=10% Similarity=0.105 Sum_probs=40.8
Q ss_pred CeEEEEEccCCCEEEEee-cCCeEEEEeccc-cce--eeeecCcccceeEEEEEeCC-CCCEEEEecCC-CcEEEEe
Q psy17863 210 PIVDACFTRDCQCILTCS-TDECLRLFDKAT-GEL--LEEYKGHKSGDFRIECCLDS-KDSQIFCGSSD-GKIYKWQ 280 (341)
Q Consensus 210 ~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d-g~i~iwd 280 (341)
..+.++|+||++.++.+. ..+.|..|++.. ++. .+.+. .....-.+ ++++ +|++.+++..+ +.|..|+
T Consensus 222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi--~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNI--SVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEE--EECTTTCCEEEEEESCHHHHHSCC
T ss_pred ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceE--EEeCCCCcEEEEecCCceEEEEEC
Confidence 456799999998777654 567899999853 322 22332 12223334 7888 58877766433 3444444
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.021 Score=45.81 Aligned_cols=66 Identities=11% Similarity=0.058 Sum_probs=40.8
Q ss_pred CCCEEEEeecCCeEEEEeccccceeeeecCcccc-------eeEEEE-Ee--CCCCCEEEEecCCCcEEEEeeeCCC
Q psy17863 219 DCQCILTCSTDECLRLFDKATGELLEEYKGHKSG-------DFRIEC-CL--DSKDSQIFCGSSDGKIYKWQLVDSS 285 (341)
Q Consensus 219 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~-~~--~~~~~~l~~~~~dg~i~iwd~~~~~ 285 (341)
.+..+++|+.+|.+...|+.+|+.+.++...... ..+... .+ ...+..++.+..+..+.+.+ ++|+
T Consensus 110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~ 185 (339)
T 2be1_A 110 EDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA 185 (339)
T ss_dssp CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSC
T ss_pred cCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC
Confidence 4556899999999999999999999888643211 001100 00 01235677777777777766 4554
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.23 Score=40.01 Aligned_cols=59 Identities=8% Similarity=0.066 Sum_probs=40.3
Q ss_pred EecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCcee--eee----cccCccEEEEEEcCC
Q psy17863 50 TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV--RRW----REHASKVTCVKFNED 108 (341)
Q Consensus 50 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~----~~~~~~v~~~~~~~~ 108 (341)
.+...-..-..++|.|++.++++--..|.|++++..+++.. ..+ .........|+++|+
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd 90 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD 90 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence 34334456689999999997777665899999986655432 111 123456789999985
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.22 Score=39.63 Aligned_cols=67 Identities=7% Similarity=0.016 Sum_probs=35.2
Q ss_pred EccCCCEEEEEeC----CC-------eEEEEcCCCcceeeE--ecCcccceeEEEEecCCCEEEEecCC-------CcEE
Q psy17863 21 FNVDGSYCLTCGS----DK-------KIKLWNPYRNLLLKT--YGGHAHEVNDATAACDSSQIASGASD-------KSVI 80 (341)
Q Consensus 21 ~~~~~~~l~t~~~----dg-------~i~iw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~ 80 (341)
...++..++.|+. ++ .+.+||..+.+-... +...... .+++.. +++.++.|+.+ ..+.
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGEV-DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEEE-TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEEE-CCEEEEEcCccCCCCcccceEE
Confidence 3456778888873 12 277788776543221 1111111 122222 56677777653 3477
Q ss_pred EEECCCCce
Q psy17863 81 LWEVTTGQP 89 (341)
Q Consensus 81 iw~~~~~~~ 89 (341)
+||..+.+-
T Consensus 131 ~yd~~~~~W 139 (318)
T 2woz_A 131 CYDPVAAKW 139 (318)
T ss_dssp EEETTTTEE
T ss_pred EEeCCCCCE
Confidence 888876643
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.36 Score=38.95 Aligned_cols=113 Identities=12% Similarity=0.071 Sum_probs=67.7
Q ss_pred eeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcce--eeEe----cCcccceeEEEEecC---CCEEEEe---
Q psy17863 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLL--LKTY----GGHAHEVNDATAACD---SSQIASG--- 73 (341)
Q Consensus 6 ~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~--~~~~----~~~~~~v~~~~~~~~---~~~l~~~--- 73 (341)
+..+-..-..-..|+|.|||+++++--..|.|++++..+++. +..+ .........++++|+ +..|...
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 344444456678999999999777755589999998665543 2222 123456789999995 3444432
Q ss_pred cCCCcEEEEECCCCc--------e--e-eeec-ccCccEEEEEEcCCCcEEEEecCC
Q psy17863 74 ASDKSVILWEVTTGQ--------P--V-RRWR-EHASKVTCVKFNEDSSVVISGSQD 118 (341)
Q Consensus 74 ~~dg~i~iw~~~~~~--------~--~-~~~~-~~~~~v~~~~~~~~~~~l~~~~~d 118 (341)
..++.|.-|.+..+. . + ..+. .....-..|+|.|||.+.++.+..
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~ 160 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGES 160 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCT
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCC
Confidence 234556666665421 1 1 1121 111233568999999877776543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.42 Score=38.74 Aligned_cols=61 Identities=7% Similarity=0.051 Sum_probs=36.7
Q ss_pred CcEEEEEEccC---CCEEEEEeC-C-----CeEEEEcCCCcc-----e-eeEec---CcccceeEEEEecCCCEEEEec
Q psy17863 14 GAIRAVRFNVD---GSYCLTCGS-D-----KKIKLWNPYRNL-----L-LKTYG---GHAHEVNDATAACDSSQIASGA 74 (341)
Q Consensus 14 ~~v~~~~~~~~---~~~l~t~~~-d-----g~i~iw~~~~~~-----~-~~~~~---~~~~~v~~~~~~~~~~~l~~~~ 74 (341)
.....|+|+|+ +..|..+.. . +.|..++...+. . +..+. ........++|.|||.+.++.+
T Consensus 75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 46789999998 445544433 2 678888776431 1 11232 1112346899999997766643
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.54 Score=38.13 Aligned_cols=132 Identities=14% Similarity=0.184 Sum_probs=74.2
Q ss_pred eEEEEEECCCCc-eEEEeCCCceEEEEccccc-------------CCCCeEEEEEccC---CCEEEEe-ec-------CC
Q psy17863 176 VVNSLCSHPTRK-HIMSACGNNVKLWTAEEDY-------------GQEPIVDACFTRD---CQCILTC-ST-------DE 230 (341)
Q Consensus 176 ~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~-------------~~~~i~~~~~~~~---~~~l~~~-~~-------d~ 230 (341)
....+++.|+++ ++++...+.|++++..... .......++++|+ +..|++. +. ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 478999999999 8877777888888743321 1234578999995 4444433 22 23
Q ss_pred eEEEEecccc-------cee-eeec-----CcccceeEEEEEeCCCCCEEEEecC-------------CCcEEEEeeeCC
Q psy17863 231 CLRLFDKATG-------ELL-EEYK-----GHKSGDFRIECCLDSKDSQIFCGSS-------------DGKIYKWQLVDS 284 (341)
Q Consensus 231 ~i~i~d~~~~-------~~~-~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~-------------dg~i~iwd~~~~ 284 (341)
.|..|+.... +.+ ..+. .|. ...+ +|.|+|.+.++-+. .|.|.-++.. +
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l--~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d-G 173 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRL--VFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ-G 173 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCE--EECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT-S
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccE--EECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC-C
Confidence 5666665422 111 1111 121 1234 89999966555433 2456555543 2
Q ss_pred C-------------ceEEEEeeeeccceEEEEEcC-CCcEEEEe
Q psy17863 285 S-------------QISTLIHSVGKAVVNSLCSHP-TRKHIMSA 314 (341)
Q Consensus 285 ~-------------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 314 (341)
+ ....+.. ++ .....++|+| +++++++-
T Consensus 174 ~~p~~npf~~~~~~~~~i~a~-G~-rnp~gl~~d~~~g~l~~~d 215 (353)
T 2g8s_A 174 EIPDDNPFIKESGVRAEIWSY-GI-RNPQGMAMNPWSNALWLNE 215 (353)
T ss_dssp CCCTTCTTTTSTTSCTTEEEE-CC-SEEEEEEEETTTTEEEEEE
T ss_pred CCCCCCCCcCCCCCCccEEEE-cC-cCccceEEECCCCCEEEEe
Confidence 2 1222221 23 3477899999 56655543
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.77 Score=39.42 Aligned_cols=267 Identities=7% Similarity=-0.013 Sum_probs=146.9
Q ss_pred EEEEEeCCCeEEEEcCCCcceeeEecCcc-------------------------cce--eEEEEe---cCCCEEEEec-C
Q psy17863 27 YCLTCGSDKKIKLWNPYRNLLLKTYGGHA-------------------------HEV--NDATAA---CDSSQIASGA-S 75 (341)
Q Consensus 27 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~-------------------------~~v--~~~~~~---~~~~~l~~~~-~ 75 (341)
.|.+|+..|.|+|+-+.+++.++.+...+ +.. ..+++. .||++|+.-. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 36788999999999999888877764211 001 123332 2577787765 4
Q ss_pred CCcEEEEECCCCceeeeecc-cCccEEEEEEc--CCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccC
Q psy17863 76 DKSVILWEVTTGQPVRRWRE-HASKVTCVKFN--EDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDG 152 (341)
Q Consensus 76 dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g 152 (341)
+..|...+++..++-+.+.- ....+..++|- |+..+++.+++... -+ .+.+...++ ..+..+ +
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~-P~--pndg~~~~~----~~~~~y-------~ 217 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFII-PH--PNDGKVFDL----QDENSY-------T 217 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCE-ES--SCSSSCCCT----TSTTEE-------E
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeec-cC--CCCCccccc----CChhhc-------e
Confidence 67788888888777655543 45678888886 68889988876421 11 011110000 111121 1
Q ss_pred eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCc----------------eEEEEcccccCCCCeEEEEE
Q psy17863 153 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN----------------VKLWTAEEDYGQEPIVDACF 216 (341)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------i~~~~~~~~~~~~~i~~~~~ 216 (341)
.....|..+.+...++... .........+++++.++.+-++ +.+++...-. ..
T Consensus 218 ~f~~iD~~tm~v~~Qv~v~---gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie--------~~ 286 (638)
T 3sbq_A 218 MYNAIDAETMEMAFQVIVD---GNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVE--------AA 286 (638)
T ss_dssp EEEEEETTTCSEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHH--------HH
T ss_pred EEEEEcCCccEEEEEEEcC---CChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHH--------HH
Confidence 1223344443333333221 1234455677888877765321 2233322110 00
Q ss_pred ccCCCEEEEeecCC-eEEEEeccc----cc-eeeeecCcccceeEEEEEeCCCCCEEEEe-cCCCcEEEEeeeCC-----
Q psy17863 217 TRDCQCILTCSTDE-CLRLFDKAT----GE-LLEEYKGHKSGDFRIECCLDSKDSQIFCG-SSDGKIYKWQLVDS----- 284 (341)
Q Consensus 217 ~~~~~~l~~~~~d~-~i~i~d~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~----- 284 (341)
-.+|++-.. +| .+.+.|.+. +. .+..+....++ ..+ ..+|||++++.+ -.+.++.++|+...
T Consensus 287 vk~G~~~~~---~g~gv~ViD~~~~~~~~~~~~~~iP~pksP-HGv--~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~ 360 (638)
T 3sbq_A 287 VKAGDFITL---GDSKTPVLDGRKKDGKDSKFTRYVPVPKNP-HGC--NTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFA 360 (638)
T ss_dssp HHTTCCBCC---TTCCCCEEECSCBTTBCCSSEEEEEESSSC-CCE--EECTTSCEEEEECTTSSBEEEEEGGGHHHHHT
T ss_pred HhcCCeEEE---CCCCeeEEccccccccCCceEEEEeCCCCC-cce--eeCCCCCEEEEcCCCCCeEEEEEeehhhhhhh
Confidence 113332211 21 367777654 22 22223322222 223 688999997765 46889999998742
Q ss_pred -Cc-------eEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccc
Q psy17863 285 -SQ-------ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 285 -~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~ 327 (341)
+. .... .-.-.....+|.++|....+-. |..|.-|+++..
T Consensus 361 ~k~~~~~~~~~ae~---e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 361 GKLADPRDVIVGEP---ELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp TCCSCGGGGEEECC---BCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred ccccCcccceEeec---cCCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 11 1112 1234567789999996666666 999999999864
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=1 Score=40.44 Aligned_cols=106 Identities=11% Similarity=0.116 Sum_probs=59.5
Q ss_pred cCCCEEEEEeCC----CeEEEEcCCCcceeeEe-c------CcccceeEEEEec-CCCEEEEecCC------CcEEEEEC
Q psy17863 23 VDGSYCLTCGSD----KKIKLWNPYRNLLLKTY-G------GHAHEVNDATAAC-DSSQIASGASD------KSVILWEV 84 (341)
Q Consensus 23 ~~~~~l~t~~~d----g~i~iw~~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~iw~~ 84 (341)
.++..++.||.+ ..+.+||+.+++....- . .....-.+++..+ +++.++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456777777753 46888888776533222 1 1111122333343 67777777643 35788998
Q ss_pred CCCceee--eecccCccEEEEEEcCCCcEEEEecCCC--eEEEEEecCC
Q psy17863 85 TTGQPVR--RWREHASKVTCVKFNEDSSVVISGSQDN--TVMMWDVKSR 129 (341)
Q Consensus 85 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~ 129 (341)
.+.+-.. .+...... .+++...++..++.|+.++ .+.+||+.+.
T Consensus 476 ~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~ 523 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEE 523 (695)
T ss_dssp TTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTT
T ss_pred CCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCC
Confidence 8754322 22211111 2233323778888887655 6888887764
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.81 Score=37.02 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=28.1
Q ss_pred CCCEEEEEeC-C---------CeEEEEcCCCcceeeEecCc-ccceeEEEEecCCCEEEEecCC
Q psy17863 24 DGSYCLTCGS-D---------KKIKLWNPYRNLLLKTYGGH-AHEVNDATAACDSSQIASGASD 76 (341)
Q Consensus 24 ~~~~l~t~~~-d---------g~i~iw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d 76 (341)
++++++.|+. + ..+.+||+.+.+-...-... .......+...++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 5667777775 2 46888998776432211111 1111111222467777887754
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.41 E-value=1 Score=37.95 Aligned_cols=60 Identities=8% Similarity=0.042 Sum_probs=38.3
Q ss_pred cceeEEEEecCCCEEEEecCCCcEEEEECCCCcee--eeecc------cCccEEEEEEcCC---CcEEEEe
Q psy17863 56 HEVNDATAACDSSQIASGASDKSVILWEVTTGQPV--RRWRE------HASKVTCVKFNED---SSVVISG 115 (341)
Q Consensus 56 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~------~~~~v~~~~~~~~---~~~l~~~ 115 (341)
.....++|.|+|+++++-...+.|++++..+++.. ..+.. .......|+|+|+ +..|+.+
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 45679999999987776554457888876555432 22221 2456779999995 4444443
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.19 E-value=1.2 Score=37.51 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=80.6
Q ss_pred ceEEEEEECCCCceEEEeCCC-ceEEEEccccc---------------CCCCeEEEEEccC---CCEEEEeec-------
Q psy17863 175 AVVNSLCSHPTRKHIMSACGN-NVKLWTAEEDY---------------GQEPIVDACFTRD---CQCILTCST------- 228 (341)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~---------------~~~~i~~~~~~~~---~~~l~~~~~------- 228 (341)
.....+++.|+++++++...+ .|.+++..... .......++|+|+ +..|.+...
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 346799999999988887764 57777643211 1345568999995 444444332
Q ss_pred ------CCeEEEEecccc-------ceee-eecCcccceeEEEEEeCCCCCEEEEecCC---------------------
Q psy17863 229 ------DECLRLFDKATG-------ELLE-EYKGHKSGDFRIECCLDSKDSQIFCGSSD--------------------- 273 (341)
Q Consensus 229 ------d~~i~i~d~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------------------- 273 (341)
...|..++.... +.+. .+.. ...-..-.++|.|+|.+.++.+..
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~ 185 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-SKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQ 185 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-CSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHH
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-CCCCCCCeEeECCCCeEEEEECCCCCCCccccccccccccccccc
Confidence 234666654321 1111 1221 111112234899999877764431
Q ss_pred -----------CcEEEEeeeCCC-----------ceEEEEeeeeccceEEEEEcCCCcEEEEeC--CCcEEEEEccc
Q psy17863 274 -----------GKIYKWQLVDSS-----------QISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEE 326 (341)
Q Consensus 274 -----------g~i~iwd~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~ 326 (341)
|.|.-.+. ++. ....+. .+| .....++|+|+|++.++-. ++.-.|..+..
T Consensus 186 ~~~aq~~~~~~G~IlRi~~-dG~ip~~Npf~~~~~~ei~a-~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~~ 259 (454)
T 1cru_A 186 ELNGKDYHTYMGKVLRLNL-DGSIPKDNPSFNGVVSHIYT-LGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIVK 259 (454)
T ss_dssp HHHTTCCTTCSSEEEEECT-TSCCCTTCCEETTEECSEEE-BCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECCT
T ss_pred cccccCCCCCCeeEEEEeC-CCCCCCCCCCCCCCcceEEE-ECC-CCcceEEECCCCCEEEEecCCCCCeEEEEecC
Confidence 33333332 232 112222 133 3577899999888666654 55555555554
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=94.83 E-value=1.7 Score=37.36 Aligned_cols=117 Identities=8% Similarity=-0.050 Sum_probs=78.2
Q ss_pred eEEEEEccC----CcceeeeEeeecCceEEEEEECCCCceEEEeCC--CceEEEEccccc-------------------C
Q psy17863 153 KIYKWQLVD----SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEEDY-------------------G 207 (341)
Q Consensus 153 ~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~-------------------~ 207 (341)
.+.+.|.+. ......+.. .......+..+|+|+++++++. .++.+++++.-. .
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP--~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~ 376 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVP--VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL 376 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEE--ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC
T ss_pred CeeEEccccccccCCceEEEEe--CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC
Confidence 366777765 222222222 2334678899999999999984 789999988421 2
Q ss_pred CCCeEEEEEccCCCEEEEeecCCeEEEEecccc----------ceeeeecCcccceeEEE---EEeCCCCCEEEEec
Q psy17863 208 QEPIVDACFTRDCQCILTCSTDECLRLFDKATG----------ELLEEYKGHKSGDFRIE---CCLDSKDSQIFCGS 271 (341)
Q Consensus 208 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~ 271 (341)
.......+|.++|....+-.-|..|..|++... ..+.++..|-++..... -.-.++|++|++..
T Consensus 377 GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 377 GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp CSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred CCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 334567899999976667778999999998764 34556665654433221 02367889988874
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=93.86 E-value=1.2 Score=37.53 Aligned_cols=20 Identities=10% Similarity=-0.082 Sum_probs=16.1
Q ss_pred cceEEEEEcCCCcEEEEeCC
Q psy17863 297 AVVNSLCSHPTRKHIMSACG 316 (341)
Q Consensus 297 ~~v~~~~~~~~~~~l~~~~d 316 (341)
.....|+|.|||.+.++.+|
T Consensus 139 H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 139 HLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp SCEEEEEECTTSCEEEEECC
T ss_pred ccCCcEeECCCCcEEEEeCC
Confidence 45688999999988877773
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=92.44 E-value=3.1 Score=32.41 Aligned_cols=174 Identities=15% Similarity=0.114 Sum_probs=86.4
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeec
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 94 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 94 (341)
.|..++....- .++. . ||.|..|-.....++..-......|..++...+. .++. . ||.|..|-....-.+..-.
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 56666664432 2233 4 8999999754432222111123457777665332 3333 4 8999999765432221111
Q ss_pred ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------cCeEEeecCCCceEEEeeccCeEEEEEccCCccee
Q psy17863 95 EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 166 (341)
Q Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~ 166 (341)
.-...|..++...+...+ -. ||.|..|-...... ..+..+.......++ -. +|.++.|-.....++.
T Consensus 99 ~~~~~v~~ia~G~~hs~a--l~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~-l~-~G~v~~wG~n~~gqlg 173 (282)
T 3qhy_B 99 EARSGVDAIAAGAWASYA--LK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA-VK-NGGVIAWGDNYFGQTT 173 (282)
T ss_dssp GGSSSEEEEEEETTEEEE--EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE-EE-TTEEEEEECCTTSTTS
T ss_pred ccCCCeEEEECcCCEEEE--Ee-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE-EE-CCEEEEecCCCCCCCC
Confidence 123467777776543333 34 89999997654221 122222222222233 23 7888888766543332
Q ss_pred eeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcc
Q psy17863 167 TLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 203 (341)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 203 (341)
.... ....+..++.......++ .++.+..|-..
T Consensus 174 ~p~~--~~~~v~~i~~G~~hs~al--~~G~v~~wG~n 206 (282)
T 3qhy_B 174 VPAE--AQSGVDDVAGGIFHSLAL--KDGKVIAWGDN 206 (282)
T ss_dssp CCGG--GGSSEEEEEECSSEEEEE--ETTEEEEEECC
T ss_pred Ccee--cCCCeEEEEecCCEEEEE--ECCeEEEEECC
Confidence 1100 112355555544443333 35666666543
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=91.63 E-value=4.7 Score=37.66 Aligned_cols=36 Identities=19% Similarity=0.072 Sum_probs=30.3
Q ss_pred EEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 256 IECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 256 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
+..+..++..++++-+.|+++|+|++.+++++.+..
T Consensus 239 ~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 239 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 334667788899999999999999999999888764
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=89.95 E-value=7 Score=31.92 Aligned_cols=208 Identities=9% Similarity=0.123 Sum_probs=114.2
Q ss_pred cEEEEEE-ccCCCEEEEEeC--C---CeEEEEcCC--------CcceeeEecC-----cccceeEEEEecCCCEEEE--e
Q psy17863 15 AIRAVRF-NVDGSYCLTCGS--D---KKIKLWNPY--------RNLLLKTYGG-----HAHEVNDATAACDSSQIAS--G 73 (341)
Q Consensus 15 ~v~~~~~-~~~~~~l~t~~~--d---g~i~iw~~~--------~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~--~ 73 (341)
-.+.++. +.+++.+++-=. + -++-..+.. ++.++.-+.. +--.|..+...+++++-+. |
T Consensus 27 ~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~~v~iD~~~rLWVLDtG 106 (381)
T 3q6k_A 27 ISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIYQPVIDDCRRLWVVDIG 106 (381)
T ss_dssp CCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEEEEEECTTCEEEEEECS
T ss_pred ceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEeeEEEEcCCCcEEEEeCC
Confidence 3456777 677877776533 2 234444322 1122144432 2235777777776654332 2
Q ss_pred cC-------------CCcEEEEECCCC--ceeeeeccc------CccEEEEEEc---CC----CcEEEEec-CCCeEEEE
Q psy17863 74 AS-------------DKSVILWEVTTG--QPVRRWREH------ASKVTCVKFN---ED----SSVVISGS-QDNTVMMW 124 (341)
Q Consensus 74 ~~-------------dg~i~iw~~~~~--~~~~~~~~~------~~~v~~~~~~---~~----~~~l~~~~-~d~~i~iw 124 (341)
-. --.|.+||+.++ +.++++.-. .+.+..+++. |+ +.+++.+. ..+.|.++
T Consensus 107 ~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVy 186 (381)
T 3q6k_A 107 SVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIY 186 (381)
T ss_dssp SCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEE
T ss_pred CcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEE
Confidence 11 125889999999 888776432 3457788887 22 33444443 46778888
Q ss_pred EecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCC----CceEEEeCCCceEEE
Q psy17863 125 DVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT----RKHIMSACGNNVKLW 200 (341)
Q Consensus 125 d~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~ 200 (341)
|+.+++...+..-.+.++.. ..-.-+|.-..| ...+..++++|+ ++.|....-.+-++|
T Consensus 187 dl~~~~swRv~~~~~~pd~~-~~~~i~G~~~~~----------------~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly 249 (381)
T 3q6k_A 187 DHKKQDSWNVTHPTFKAERP-TKFDYGGKEYEF----------------KAGIFGITLGDRDSEGNRPAYYLAGSAIKVY 249 (381)
T ss_dssp ETTTTEEEEEECGGGSCCSC-EEEEETTEEEEE----------------CCCEEEEEECCCCTTSCCEEEEEESSCSEEE
T ss_pred ECCCCcEEEEccCCCccccC-cceEECCEEeEe----------------ccCceEEEecCCcCCCCeEEEEEECCCCcEE
Confidence 88887643333211222210 011112221111 234889999998 777777665555555
Q ss_pred Eccccc---------------C--CCCeEEEEEc-cCCCEEEEeecCCeEEEEeccc
Q psy17863 201 TAEEDY---------------G--QEPIVDACFT-RDCQCILTCSTDECLRLFDKAT 239 (341)
Q Consensus 201 ~~~~~~---------------~--~~~i~~~~~~-~~~~~l~~~~~d~~i~i~d~~~ 239 (341)
.+.+.. . ...-..+++. .+|.++++--....|..|+..+
T Consensus 250 ~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 250 SVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 554311 1 1223345665 5777777777788899998764
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=89.84 E-value=11 Score=33.89 Aligned_cols=185 Identities=9% Similarity=0.086 Sum_probs=92.0
Q ss_pred CCceEEEeecc----CeEEEEEccCCcceeee-Ee----eecCceEEEEEECC-CCceEEEeCC-------CceEEEEcc
Q psy17863 141 KDSQIFCGSSD----GKIYKWQLVDSSQISTL-IH----SVGKAVVNSLCSHP-TRKHIMSACG-------NNVKLWTAE 203 (341)
Q Consensus 141 ~~~~~~~~~~~----g~i~~~d~~~~~~~~~~-~~----~~~~~~~~~~~~~~-~~~~~~~~~~-------~~i~~~~~~ 203 (341)
.+..++.|+.+ ..+.+||..+.+-.... .. ......-.+++..+ +++.++.++. +.+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 34455555532 35777777765433222 10 01111122333333 6666666542 357778776
Q ss_pred ccc-------C-CCCeEEEEEccCCCEEEEeecCC--eEEEEecccccee--ee---ecCcccceeEEEEEeCCC-CCEE
Q psy17863 204 EDY-------G-QEPIVDACFTRDCQCILTCSTDE--CLRLFDKATGELL--EE---YKGHKSGDFRIECCLDSK-DSQI 267 (341)
Q Consensus 204 ~~~-------~-~~~i~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~--~~---~~~~~~~~~~~~~~~~~~-~~~l 267 (341)
+.. . ...-.+++.-.++++++.|+.++ .+.+||..+.+-. .. +.........+ .+..+ ++.+
T Consensus 477 t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~--v~~~~~~~iy 554 (695)
T 2zwa_A 477 TREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGL--EFDPVSKQGI 554 (695)
T ss_dssp TTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEE--EEETTTTEEE
T ss_pred CCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEE--EEeCCCCEEE
Confidence 633 1 11112333334888888887755 6899998765422 11 11111111112 34444 6677
Q ss_pred EEecC--C-----CcEEEEeeeCCCc-----eEEEEeee-eccceEEEEEcCCCcEEEEeC-C--------CcEEEEEcc
Q psy17863 268 FCGSS--D-----GKIYKWQLVDSSQ-----ISTLIHSV-GKAVVNSLCSHPTRKHIMSAC-G--------NNVKLWTAE 325 (341)
Q Consensus 268 ~~~~~--d-----g~i~iwd~~~~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-d--------~~i~vw~~~ 325 (341)
+.|+. + ..+.+||+.+... ...+.... ....-.+++...++++++.|+ + ..+.+||+.
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 77765 2 4588999888762 23332100 111111233334477777777 4 247888877
Q ss_pred cc
Q psy17863 326 ED 327 (341)
Q Consensus 326 ~~ 327 (341)
+.
T Consensus 635 t~ 636 (695)
T 2zwa_A 635 SE 636 (695)
T ss_dssp TT
T ss_pred CC
Confidence 54
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=86.02 E-value=15 Score=31.07 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=34.2
Q ss_pred cceeEEEEecCCC-EEEEecCCCcEEEEECCCCc---eeeeec---------ccCccEEEEEEcCC
Q psy17863 56 HEVNDATAACDSS-QIASGASDKSVILWEVTTGQ---PVRRWR---------EHASKVTCVKFNED 108 (341)
Q Consensus 56 ~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~---~~~~~~---------~~~~~v~~~~~~~~ 108 (341)
..-..|+|.|++. .|+++...|.|++++..... .+..+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3457899999996 55666778999999753221 122111 11356788999985
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=83.89 E-value=15 Score=29.32 Aligned_cols=115 Identities=13% Similarity=0.095 Sum_probs=68.0
Q ss_pred CCCeEEEEEcc---CCCEEEEeecCCeEEEEecccccee-------eeecCcccceeEEEEEeCCCCCEEEEecCCCcEE
Q psy17863 208 QEPIVDACFTR---DCQCILTCSTDECLRLFDKATGELL-------EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIY 277 (341)
Q Consensus 208 ~~~i~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 277 (341)
...|..+..-+ +..+++..+.+|.++.-.+...... ..+... ..+..+ ........++..+..|.+.
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~--~~~~~~d~ill~T~~G~~~ 170 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGA--VLCSAGDDLLLVSANGQSI 170 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEE--EEECTTCEEEEEETTSEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEE--EEecCCCEEEEEECCCeEE
Confidence 34455554333 5778999999999999887653321 122222 223222 2223445778888899988
Q ss_pred EEeee--CCCc-------eEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 278 KWQLV--DSSQ-------ISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 278 iwd~~--~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
.+... .-.. +..+.. .....|.++...+++.+|+..+ .|.++.-.+.+
T Consensus 171 rf~~~~~eip~~gr~a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 171 RFSATDEALRPMGRATSGVQGMRF-NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp EEECCTTTSCCCCTTSBCEESSCC-CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEECcccccCcCCcCCCCeeeecC-CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 88776 2111 110111 2345677776666666777777 99888877654
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=83.76 E-value=17 Score=29.77 Aligned_cols=162 Identities=7% Similarity=0.113 Sum_probs=90.2
Q ss_pred eEEEEEccCC--cceeeeEeeec----CceEEEEEEC---CC----CceEEEeC--CCceEEEEccccc----------C
Q psy17863 153 KIYKWQLVDS--SQISTLIHSVG----KAVVNSLCSH---PT----RKHIMSAC--GNNVKLWTAEEDY----------G 207 (341)
Q Consensus 153 ~i~~~d~~~~--~~~~~~~~~~~----~~~~~~~~~~---~~----~~~~~~~~--~~~i~~~~~~~~~----------~ 207 (341)
+|.+||+.+. +.++.+..... ...+..+.+. |. +.++..+. ...|.++|+.++. .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5777888887 66666654321 2456777776 22 23333332 3678888876533 0
Q ss_pred ---------------CCCeEEEEEccC----CCEEEEeecCCeEEEEeccc-----cceee--eecCcccc-eeEEEEEe
Q psy17863 208 ---------------QEPIVDACFTRD----CQCILTCSTDECLRLFDKAT-----GELLE--EYKGHKSG-DFRIECCL 260 (341)
Q Consensus 208 ---------------~~~i~~~~~~~~----~~~l~~~~~d~~i~i~d~~~-----~~~~~--~~~~~~~~-~~~~~~~~ 260 (341)
...+..++++|+ ++.|.-....+ -++|.+.+ ..... +..+...+ ......++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 236778888987 67776655443 23343322 11111 11112211 12333367
Q ss_pred C-CCCCEEEEecCCCcEEEEeeeC-C---CceEEEEeeeeccceEEEEEcCCCcEEEEeC
Q psy17863 261 D-SKDSQIFCGSSDGKIYKWQLVD-S---SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 261 ~-~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
+ .+|.++++--....|..|+..+ . +....+.....-..+..+.+.++|.+.+.+.
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence 5 6787778878889999999764 1 2334444212223577788877877666653
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=83.57 E-value=14 Score=28.96 Aligned_cols=100 Identities=10% Similarity=0.058 Sum_probs=56.3
Q ss_pred EEEccCCCEEEEEeCC--------------CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEec----CCCcEE
Q psy17863 19 VRFNVDGSYCLTCGSD--------------KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA----SDKSVI 80 (341)
Q Consensus 19 ~~~~~~~~~l~t~~~d--------------g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~ 80 (341)
--++++|++|+-+... ..|+..++...+.. .+.... ...|++++++|+-.. .+..|.
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLDPDP----CIYASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEECSC----EEEEEEETTEEEEEEESSSSCEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-EeecCC----ccEEEEeCCEEEEEeecCCCCceEE
Confidence 3457888888866542 36777777655432 232221 236778888888665 334555
Q ss_pred EEECCCCceeeeecccCccEEEEEEcCCCcEEEEecC-CCeEEEEEecC
Q psy17863 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKS 128 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~ 128 (341)
..++.. .....+..+.. .+++++++.|+-.+. ...|...++..
T Consensus 133 ~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g 176 (302)
T 3s25_A 133 RIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTAS 176 (302)
T ss_dssp EEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTT
T ss_pred EEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCC
Confidence 566653 33344433322 345666777765544 45565555544
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=83.47 E-value=30 Score=32.46 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=33.0
Q ss_pred CCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeee
Q psy17863 209 EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY 246 (341)
Q Consensus 209 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 246 (341)
..+.+++..++..++++-+.|+++|+|++.+++++.+.
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 45677788888999999999999999999999887765
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=80.17 E-value=20 Score=28.20 Aligned_cols=95 Identities=9% Similarity=0.006 Sum_probs=49.2
Q ss_pred EccCCCEEEEeecC--CeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEec--CCCcEEEEeeeCCCceEEEE
Q psy17863 216 FTRDCQCILTCSTD--ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGS--SDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 216 ~~~~~~~l~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~ 291 (341)
+.|++.+|+-...+ ..|..-++.... ...+... .+ . .++|++++|+-+. ..+.|..-++ +|.....+.
T Consensus 191 ~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~~--~~--~--~~~~~g~~Iy~~~~~~~~~i~~~~~-DG~~r~~l~ 262 (302)
T 3s25_A 191 VVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTEA--NI--E--HYNVYGSLIFYQRGGDNPALCVVKN-DGTGFKELA 262 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSCS--CE--E--EEEEETTEEEEEECSSSCEEEEEET-TSCCCEEEE
T ss_pred eeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeCC--Cc--c--eEEECCCEEEEEECCCCcEEEEEEC-CCCccEEee
Confidence 45777777655443 356666665433 3333321 12 1 3677788877653 2355666664 444445554
Q ss_pred eeeeccceEEEEEcCCCcEEEEeC--CCcEEEEEc
Q psy17863 292 HSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTA 324 (341)
Q Consensus 292 ~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~vw~~ 324 (341)
. . .+.. +++.+.+|.-.. .+.|..-++
T Consensus 263 ~--~--~~~~--i~i~~d~Iy~td~~~~~i~~~~~ 291 (302)
T 3s25_A 263 K--G--EFCN--INVTSQYVYFTDFVSNKEYCTST 291 (302)
T ss_dssp E--S--CEEE--EEECSSEEEEEETTTCCEEEEES
T ss_pred C--C--ccce--EEEeCCEEEEEECCCCeEEEEEC
Confidence 1 1 2333 445566666555 555544443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 341 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-23 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-18 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-15 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-13 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-18 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-14 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-16 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 6e-13 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-11 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-10 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-11 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-10 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-11 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 5e-10 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-10 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 4e-10 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-09 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 6e-09 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 8e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 7e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.001 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-06 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-05 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 7e-06 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 4e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.002 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 4e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.004 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 5e-04 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 94.8 bits (234), Expect = 8e-23
Identities = 61/327 (18%), Positives = 118/327 (36%), Gaps = 30/327 (9%)
Query: 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 65
+ + + V F+ S ++ D IK+W+ +T GH V D +
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69
Query: 66 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
+AS ++D ++ LW+ + +R H V+ V + ++S S+D T+ MW+
Sbjct: 70 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129
Query: 126 VKSR---------SHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAV 176
V++ + + I S+D + W + + L
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189
Query: 177 VNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFD 236
S + I A G+ K + +L+ S D+ ++++D
Sbjct: 190 CISWAPESSYSSISEATGSETK----------------KSGKPGPFLLSGSRDKTIKMWD 233
Query: 237 KATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK 296
+TG L GH + S I + D + W + + TL + +
Sbjct: 234 VSTGMCLMTLVGHDNWVRG--VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL--NAHE 289
Query: 297 AVVNSLCSHPTRKHIMSACGNN-VKLW 322
V SL H T ++++ + VK+W
Sbjct: 290 HFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 82.1 bits (201), Expect = 2e-18
Identities = 29/107 (27%), Positives = 51/107 (47%)
Query: 19 VRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKS 78
+ G + L+ DK IK+W+ + L T GH + V I S A DK+
Sbjct: 211 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 270
Query: 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
+ +W+ + ++ H VT + F++ + V++GS D TV +W+
Sbjct: 271 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.6 bits (179), Expect = 2e-15
Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 29/185 (15%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT 62
CV+T + +R VR N DG+ +C +D+ +++W H H V +
Sbjct: 133 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS 192
Query: 63 AACDSSQIA--------------------SGASDKSVILWEVTTGQPVRRWREHASKVTC 102
A +SS + SG+ DK++ +W+V+TG + H + V
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 252
Query: 103 VKFNEDSSVVISGSQDNTVMMWDVKSRS--------HHPIQCCLDSKDSQ-IFCGSSDGK 153
V F+ ++S + D T+ +WD K++ H + K + + GS D
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 312
Query: 154 IYKWQ 158
+ W+
Sbjct: 313 VKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 66.7 bits (161), Expect = 5e-13
Identities = 52/271 (19%), Positives = 86/271 (31%), Gaps = 36/271 (13%)
Query: 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKS-------RSHHPIQCCL 138
H S VT V F+ SV++S S+D T+ +WD ++ + H +
Sbjct: 6 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65
Query: 139 DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVK 198
S S + V+S+ P HI+SA +
Sbjct: 66 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 125
Query: 199 LWTAEEDYGQEPIVDA--------CFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK 250
+ +D I +CS D+ +R++ AT E E + H+
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 185
Query: 251 SGDFRIECCLDSKDSQI------------------FCGSSDGKIYKWQLVDSSQISTLIH 292
I +S S I GS D I W + + TL+
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245
Query: 293 SVGKAVVNSLCSHPTRKHIMSACGNN-VKLW 322
V + H K I+S + +++W
Sbjct: 246 H--DNWVRGVLFHSGGKFILSCADDKTLRVW 274
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 82.1 bits (201), Expect = 3e-18
Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 2/124 (1%)
Query: 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHE--VNDA 61
C QT + I A+ F +G+ T D +L++ + L TY +
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276
Query: 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121
+ + + +G D + +W+ H ++V+C+ +D V +GS D+ +
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Query: 122 MMWD 125
+W+
Sbjct: 337 KIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 76.3 bits (186), Expect = 3e-16
Identities = 54/295 (18%), Positives = 94/295 (31%), Gaps = 21/295 (7%)
Query: 47 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFN 106
+T GH ++ DS + S + D +I+W+ T V +S V +
Sbjct: 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106
Query: 107 EDSSVVISGSQDNTVMMWDVKS-----------RSHHPIQCCLDSKDSQIFCGSSDGKIY 155
+ V G DN ++++K+ H C D SS
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTC 166
Query: 156 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE-------DYGQ 208
+++ Q +T V++ + TR + AC + KLW E +
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 209 EPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIF 268
I CF + T S D RLFD + L Y +
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286
Query: 269 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN-VKLW 322
G D W + + + L + V+ L + + ++ +K+W
Sbjct: 287 AGYDDFNCNVWDALKADRAGVLAGHDNR--VSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 76.3 bits (186), Expect = 3e-16
Identities = 40/298 (13%), Positives = 86/298 (28%), Gaps = 28/298 (9%)
Query: 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAA 64
+T+ I A+ + D ++ D K+ +W+ Y + + V A
Sbjct: 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106
Query: 65 CDSSQIASGASDKSVILWEVTT------------GQPVRRWREHASKVTCVKFNEDSSVV 112
+ +A G D ++ + T G + + +
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTC 166
Query: 113 ISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV 172
+ + + L G+ D W + + T +
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF--TG 224
Query: 173 GKAVVNSLCSHPTRKHIMSACGNNV----------KLWTAEEDYGQEPIVDACFTRDCQC 222
++ +N++C P + + +L T D I F++ +
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 223 ILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKW 279
+L D ++D + GH + R+ C + D + GS D + W
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDN---RVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 71.3 bits (173), Expect = 1e-14
Identities = 28/168 (16%), Positives = 57/168 (33%), Gaps = 11/168 (6%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
T G + ++ D ++ D KLW+ + +T+ GH ++N
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA 231
Query: 61 ATAACDSSQIASGASDKSVIL--WEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD 118
+ + A+G+ D + L +T V F++ ++++G D
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Query: 119 NTVMMWDVKSRS--------HHPIQCCLDSKDSQ-IFCGSSDGKIYKW 157
+WD + + C + D + GS D + W
Sbjct: 292 FNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 67.1 bits (162), Expect = 4e-13
Identities = 35/258 (13%), Positives = 81/258 (31%), Gaps = 21/258 (8%)
Query: 88 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HPIQCCLD 139
+ R R H +K+ + + DS +++S SQD +++WD + + + C
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 140 SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKL 199
+ I + + + + + L +
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 200 W----------TAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGH 249
T ++ D + ++ + D +L+D G + + GH
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 250 KSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 309
+S I C + GS D + L ++ T H + S+ + +
Sbjct: 226 ESDINAI--CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 310 HIMSACGNN-VKLWTAEE 326
+++ + +W A +
Sbjct: 284 LLLAGYDDFNCNVWDALK 301
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 80.2 bits (196), Expect = 2e-17
Identities = 53/324 (16%), Positives = 105/324 (32%), Gaps = 57/324 (17%)
Query: 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTY------------------GGHA 55
+ V+F+ DG Y L G +K +++ L+
Sbjct: 63 SVVCCVKFSNDGEY-LATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSD 121
Query: 56 HEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISG 115
+ + D +A+GA D+ + +W++ + V + H + + + ++SG
Sbjct: 122 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 181
Query: 116 SQDNTVMMWDVKSRSHHPIQCCLD---------SKDSQIFCGSSDGKIYKWQLVDSSQIS 166
S D TV +WD+++ D I GS D + W +
Sbjct: 182 SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 241
Query: 167 TLIHSVG-----KAVVNSLCSHPTRKHIMSACGNN--------------------VKLWT 201
L K V S+ + ++S +
Sbjct: 242 RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE 301
Query: 202 AEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSG----DFRIE 257
++ ++ T++ + IL+ S D + +DK +G L +GH++
Sbjct: 302 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 361
Query: 258 CCLDSKDSQIFCGSSDGKIYKWQL 281
L + + GS D K W+
Sbjct: 362 SSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.8 bits (174), Expect = 2e-14
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 18/133 (13%)
Query: 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWN------------PYRNLLLKTYGGHAHEVND 60
+ ++ +V F DG ++ D+ +KLWN P TY GH V
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCV------KFNEDSSVVIS 114
+ I SG+ D+ V+ W+ +G P+ + H + V V + +V +
Sbjct: 314 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373
Query: 115 GSQDNTVMMWDVK 127
GS D +W K
Sbjct: 374 GSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.3 bits (126), Expect = 2e-08
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEV-- 58
TC T + + +V + Y L+ D+ + W+ L GH + V
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355
Query: 59 ----NDATAACDSSQIASGASDKSVILWEV 84
N ++ + + A+G+ D +W+
Sbjct: 356 VAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.1 bits (123), Expect = 4e-08
Identities = 48/308 (15%), Positives = 102/308 (33%), Gaps = 58/308 (18%)
Query: 70 IASGASDKSVILWEVTTGQPVR----RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
++ IL+ + + + +H S V CVKF+ D + +G + T ++
Sbjct: 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYR 89
Query: 126 VKSRS--------------------------HHPIQCCLDSKDSQIFCGSSDGKIYKWQL 159
V S I+ S D + ++ ++ +
Sbjct: 90 VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149
Query: 160 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKL-------WTAEEDYGQEPIV 212
+++ +I ++ + + + K + + V++ +
Sbjct: 150 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT 209
Query: 213 DACFTRDCQCILTCSTDECLRLFDKATGEL-------LEEYKGHKSGDFRIECCLDSKDS 265
A D + I S D +R++D TG L E GHK + + D +
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ-- 267
Query: 266 QIFCGSSDGKIYKWQLVDSSQIST----------LIHSVGKAVVNSLCSHPTRKHIMSAC 315
+ GS D + W L +++ S + + K V S+ + ++I+S
Sbjct: 268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 327
Query: 316 GNN-VKLW 322
+ V W
Sbjct: 328 KDRGVLFW 335
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.0 bits (185), Expect = 4e-16
Identities = 49/290 (16%), Positives = 93/290 (32%), Gaps = 12/290 (4%)
Query: 40 WNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASK 99
W K GH V ++I SG+ D ++ +W TG+ +R H
Sbjct: 1 WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 100 VTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQC-----CLDSKDSQIFCGSSDGKI 154
V + ++ + S + V + H C+ + ++ GS D +
Sbjct: 60 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119
Query: 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM--SACGNNVKLWTAEEDYGQEPIV 212
W + + L+ V + + T
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 179
Query: 213 DACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSS 272
D +++ S D +R++D TG + GH+S + ++ KD+ + G++
Sbjct: 180 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS----LTSGMELKDNILVSGNA 235
Query: 273 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 322
D + W + + TL + I S+ VKLW
Sbjct: 236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.5 bits (150), Expect = 1e-11
Identities = 50/333 (15%), Positives = 106/333 (31%), Gaps = 26/333 (7%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
E + + + G+ ++ D +K+W+ L+T GH V
Sbjct: 5 ELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW-- 61
Query: 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121
+ + L + T + V+SGS+D T+
Sbjct: 62 --SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119
Query: 122 MMWDVKSRSHHPIQC-------CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK 174
+WD+++ + C+ ++ G+ D + W + + TL
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH--- 176
Query: 175 AVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED-----YGQEPIVDACFTRDCQCILTCST 228
H++S ++++W E + + +++ +
Sbjct: 177 -TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNA 235
Query: 229 DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 288
D ++++D TG+ L+ +G + C +K+ I S DG + W L I
Sbjct: 236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI-TSSDDGTVKLWDLKTGEFIR 294
Query: 289 TLIHSVGK---AVVNSLCSHPTRKHIMSACGNN 318
L+ VV + + T+ N
Sbjct: 295 NLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.8 bits (161), Expect = 6e-13
Identities = 34/317 (10%), Positives = 82/317 (25%), Gaps = 12/317 (3%)
Query: 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN--LLLKTYGGHAHEVNDATAACDSSQIAS 72
I +N D + C ++ ++ ++ N + + H +V A DS++I +
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
Query: 73 GASDKSVILWEVTTGQPVRRWREH--ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 130
+D++ +W + CV++ + GS + + + +
Sbjct: 69 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128
Query: 131 HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 190
+ + S I S V + M
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188
Query: 191 SACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHK 250
+ + CF+ + + S D + L D +
Sbjct: 189 PFGELMFESS-----SSCGWVHGVCFSANGSRVAWVSHDSTVCLADA---DKKMAVATLA 240
Query: 251 SGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKH 310
S + +S + D + ++ + + +S R+
Sbjct: 241 SETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARER 300
Query: 311 IMSACGNNVKLWTAEED 327
+ +A
Sbjct: 301 FQNLDKKASSEGSAAAG 317
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.7 bits (140), Expect = 3e-10
Identities = 39/280 (13%), Positives = 88/280 (31%), Gaps = 11/280 (3%)
Query: 54 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP--VRRWREHASKVTCVKFNEDSSV 111
++ D +QIA ++ V ++E + + V +EH +VT V + DS+
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 112 VISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL-IH 170
+++ D +W +K R+ P L + + + S IS
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 171 SVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDE 230
V P R ++S + + A + + + + ++ + +
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 231 CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 290
F + E C + S++ S D + ++TL
Sbjct: 186 SKMPFGELMFESSSSCGWVHG------VCFSANGSRVAWVSHDSTVCLADADKKMAVATL 239
Query: 291 IHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQ 330
+ ++ + + L+T + G+
Sbjct: 240 ASETLP--LLAVTFITESSLVAAGHDCFPVLFTYDSAAGK 277
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 51.8 bits (122), Expect = 4e-08
Identities = 37/332 (11%), Positives = 92/332 (27%), Gaps = 20/332 (6%)
Query: 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDA 61
++ V + G + V + D + +TCG+D+ +W T
Sbjct: 40 KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99
Query: 62 TAACDSSQ--IASGASDKSVILWEVTTGQPVRRWREHASK----VTCVKFNEDSSVVISG 115
++ A G+ + + + + V + ++ +S ++ +G
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159
Query: 116 SQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA 175
S D ++ + F + +SS +H V +
Sbjct: 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG---------ELMFESSSSCGWVHGVCFS 210
Query: 176 VVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLF 235
S + + + + K+ A P++ F + ++ D LF
Sbjct: 211 ANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESS-LVAAGHDCFPVLF 269
Query: 236 DKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG 295
+ + G + + + + D K + +H
Sbjct: 270 TYDSAAGKLSFGGRLDVPKQSSQRGLTARERF--QNLDKKASSEGSAAAGAGLDSLHKNS 327
Query: 296 KAVVNSLCSHPTRKHIMSACG--NNVKLWTAE 325
+ ++ L + G + +W
Sbjct: 328 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.4 bits (95), Expect = 9e-05
Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 4/116 (3%)
Query: 202 AEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATG--ELLEEYKGHKSGDFRIECC 259
A + EPI + +D I C + + +++K+ + E K H +
Sbjct: 1 AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGV--D 58
Query: 260 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 315
++I +D Y W L + TL+ + P K
Sbjct: 59 WAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS 114
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.1 bits (89), Expect = 5e-04
Identities = 27/171 (15%), Positives = 48/171 (28%), Gaps = 13/171 (7%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
+ G + V F+ +GS D + L + + + + T +
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 248
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKF----------NEDSS 110
T +SS +A+G D +L+ + + N D
Sbjct: 249 VTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307
Query: 111 VVISGSQDNTVMMWDVKSRSHHPIQCCLDSKD--SQIFCGSSDGKIYKWQL 159
GS + + S I K SQ DG + W +
Sbjct: 308 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.9 bits (151), Expect = 8e-12
Identities = 32/326 (9%), Positives = 77/326 (23%), Gaps = 23/326 (7%)
Query: 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS 75
+ DG + R+ H V T + + + +G
Sbjct: 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTG-G 70
Query: 76 DKSVILWEVTTGQPVR-----RWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 130
V +W+++ + + K D +I G + +T+ +WD+ + +
Sbjct: 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130
Query: 131 HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 190
S + S + I+ V I
Sbjct: 131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190
Query: 191 SACGNNVKLWTAEEDYGQEPIVDACFTRDCQCIL-------------TCSTDECLRLFDK 237
+ ++ + + + +
Sbjct: 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV 250
Query: 238 ATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKA 297
++Y+ H + D + W+ + I S +
Sbjct: 251 LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---S 307
Query: 298 VVNSLCSHPTRKHIMSACGNN-VKLW 322
V S K+I++ G+ ++
Sbjct: 308 SVLSCDISVDDKYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.5 bits (150), Expect = 1e-11
Identities = 33/290 (11%), Positives = 81/290 (27%), Gaps = 24/290 (8%)
Query: 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN-----LLLKTYGGHAHEVNDATAACDS 67
+ AV + + T G +K+W+ + + + D
Sbjct: 51 GEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 68 SQIASGASDKSVILWEVTTGQPVRRWREHA--------SKVTCVKFNEDSSVVISGSQDN 119
+ G ++ +W++ P + + + K + + +
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Query: 120 TVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNS 179
V+ H + + G + D + L + + S
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229
Query: 180 LCSHPTRKHIMSACGNNVKLWTA-------EEDYGQEPIVDACFTRDCQCILTCSTDECL 232
L PT + + ++ + + ++ F + ++ D L
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLL 289
Query: 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 282
+ G + + K S + C + D I GS D K ++++
Sbjct: 290 NAWRTPYGASIFQSKESSS---VLSCDISVDDKYIVTGSGDKKATVYEVI 336
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 4e-10
Identities = 16/126 (12%), Positives = 38/126 (30%), Gaps = 2/126 (1%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
+ I ++ + G + +++ + + H V
Sbjct: 212 LREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLS 270
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120
A S D + W G + + + +S V + D +++GS D
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKK 329
Query: 121 VMMWDV 126
+++V
Sbjct: 330 ATVYEV 335
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 61.5 bits (147), Expect = 2e-11
Identities = 25/295 (8%), Positives = 71/295 (24%), Gaps = 17/295 (5%)
Query: 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATA 63
+ Q AI A+ + DG + ++ I W+ + + + +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 64 ACDSSQIASGASDKSVILWEVTTGQPVRRWRE---HASKVTCVKFNEDSSVVISGSQDNT 120
+ + + D + + +S+ + + D + ++ +
Sbjct: 63 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122
Query: 121 VMMWDVKS--------------RSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 166
+ K + S + + + +
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182
Query: 167 TLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTC 226
T + + S N T + + ++ D + T
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242
Query: 227 STDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 281
S D + +++ + + ++ I D I W +
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 58.8 bits (140), Expect = 2e-10
Identities = 33/293 (11%), Positives = 78/293 (26%), Gaps = 18/293 (6%)
Query: 47 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE-HASKVTCVKF 105
+ + GH + +++ D + S ++ + W+++TG R + + HA+ +T +K
Sbjct: 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63
Query: 106 NEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 165
+ D+ + + + + SQ + I
Sbjct: 64 TSKGDLFTVSWDDH-LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122
Query: 166 STL---------------IHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEP 210
+ ++ K + + E
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182
Query: 211 IVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 270
A + T + + + EL + ++ G
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242
Query: 271 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN-VKLW 322
S D + W + S +I + I+SA ++ +K W
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.7 bits (98), Expect = 3e-05
Identities = 29/250 (11%), Positives = 64/250 (25%), Gaps = 14/250 (5%)
Query: 87 GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS---------HHPIQCC 137
G + H +T + + D + S + + WD+ + I
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61
Query: 138 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNV 197
+ +F S D + S S+ + + + I A
Sbjct: 62 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 121
Query: 198 KLWTAE----EDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGD 253
+ E + D Q + D + ++ + + E +
Sbjct: 122 IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE 181
Query: 254 FRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS 313
++ + S I + T + A V + P + +
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 241
Query: 314 ACGNN-VKLW 322
+N V +W
Sbjct: 242 GSLDNSVIVW 251
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.4 bits (147), Expect = 3e-11
Identities = 46/292 (15%), Positives = 80/292 (27%), Gaps = 20/292 (6%)
Query: 5 CVQTIDCKQGAIRAVR-FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVN---- 59
+Q I C+ + V D ++ D IK+W+ + GH V
Sbjct: 4 SLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63
Query: 60 --DATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQ 117
S + + + V ++D S+ +
Sbjct: 64 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 123
Query: 118 DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVV 177
T + H +D D I S D I W + TL G
Sbjct: 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN---GHKRG 180
Query: 178 NSLCSHPTRKHIMSACGNNVKLWTAEED-----YGQEPIVDACFTRDCQCILTCSTDECL 232
+ + R + + N ++LW E + C D + I++ + D +
Sbjct: 181 IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKI 240
Query: 233 RLFDKATGELLEEYKGHK-----SGDFRIECCLDSKDSQIFCGSSDGKIYKW 279
+++D G L + QI S D I W
Sbjct: 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (136), Expect = 5e-10
Identities = 52/294 (17%), Positives = 99/294 (33%), Gaps = 25/294 (8%)
Query: 48 LKTYGGHAHEVNDATA-ACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFN 106
L+ + D +I SG D ++ +W+ T + R H V C++++
Sbjct: 5 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64
Query: 107 EDSSVVISGSQDNTVMM-----WDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVD 161
E + S V H L + + S D I W +
Sbjct: 65 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124
Query: 162 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE-----EDYGQEPIVDACF 216
+ I+ VG ++ + + ++ +K+W AC
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL 184
Query: 217 TRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKI 276
+ +++ S+D +RL+D G L +GH + C+ + +I G+ DGKI
Sbjct: 185 QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH----EELVRCIRFDNKRIVSGAYDGKI 240
Query: 277 YKWQLVDSSQISTLIHSVGKAV-------VNSLCSHPTRKHIMSACG-NNVKLW 322
W LV + ++ V L I+S+ + + +W
Sbjct: 241 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 2e-08
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 15/131 (11%)
Query: 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATA 63
V+T++ + I +++ ++ SD I+LW+ L+ GH V
Sbjct: 169 EFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR- 225
Query: 64 ACDSSQIASGASDKSVILWEVTTG---------QPVRRWREHASKVTCVKFNEDSSVVIS 114
D+ +I SGA D + +W++ +R EH+ +V ++F D ++S
Sbjct: 226 -FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVS 282
Query: 115 GSQDNTVMMWD 125
S D+T+++WD
Sbjct: 283 SSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (103), Expect = 8e-06
Identities = 45/218 (20%), Positives = 84/218 (38%), Gaps = 39/218 (17%)
Query: 27 YCLTCGSDKKIKLWNP-YRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 85
+TC D+ I +W+ + H D I S + D+++ +W +
Sbjct: 107 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS 166
Query: 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-------HHPIQCCL 138
T + VR H + C+++ + +V+SGS DNT+ +WD++ + H + C+
Sbjct: 167 TCEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 224
Query: 139 DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVK 198
+ +I G+ DGKI W LV + G + +L H
Sbjct: 225 RFDNKRIVSGAYDGKIKVWDLVAALDPRAP---AGTLCLRTLVEH--------------- 266
Query: 199 LWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFD 236
+ F D I++ S D+ + ++D
Sbjct: 267 ---------SGRVFRLQF--DEFQIVSSSHDDTILIWD 293
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 59.5 bits (142), Expect = 1e-10
Identities = 32/286 (11%), Positives = 71/286 (24%), Gaps = 28/286 (9%)
Query: 66 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
+I + SV V + + EH+ + T K + SG V +WD
Sbjct: 28 AGDKIQY-CNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWD 86
Query: 126 VKSRSHHPIQ--------------------CCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 165
+H + + F + Q
Sbjct: 87 TTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA 146
Query: 166 STLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILT 225
+ K + + ++ + + + + + D +
Sbjct: 147 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS 206
Query: 226 CSTDECLRLFDKATGELLEEYKGHK-----SGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 280
D + L++ G ++ ++I S+D I W
Sbjct: 207 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 266
Query: 281 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNN-VKLWTAE 325
+ T+ + L T++ ++S N + E
Sbjct: 267 VATLKVEKTIPVG-TRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.3 bits (105), Expect = 5e-06
Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 65 CDSSQIASGASDKSVILWEVTTGQPVRRWREHAS-KVTCVKFNEDSSVVISGSQDNTVMM 123
D ++IAS ++DK++ +W V T + + + + ++S S + +
Sbjct: 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307
Query: 124 WD 125
+
Sbjct: 308 VN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.5 bits (90), Expect = 4e-04
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTY-GGHAHEVNDA 61
G++ + ++ DG+ + +DK IK+WN + KT G E
Sbjct: 228 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 287
Query: 62 TAACDSSQIASGASDKSVILWE 83
+ S +++ +
Sbjct: 288 GIIWTKQALVSISANGFINFVN 309
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.8 bits (140), Expect = 3e-10
Identities = 30/306 (9%), Positives = 70/306 (22%), Gaps = 31/306 (10%)
Query: 50 TYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDS 109
T GH V + + + +GA DK + +++ + + + H V +K+
Sbjct: 7 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65
Query: 110 SVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIF----------CGSSDGKIYKWQL 159
+V + + K H + + GS D ++ W+L
Sbjct: 66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125
Query: 160 VDSSQISTLIHSVGKAVVNSLCSHPTRK--------------------HIMSACGNNVKL 199
S + +V + + N + +
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185
Query: 200 WTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECC 259
W + + D E
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 245
Query: 260 LDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNV 319
+ S + D++ S + + + ++S N
Sbjct: 246 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQF 305
Query: 320 KLWTAE 325
++
Sbjct: 306 NIYNLR 311
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.8 bits (135), Expect = 1e-09
Identities = 38/334 (11%), Positives = 80/334 (23%), Gaps = 34/334 (10%)
Query: 21 FNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVI 80
+ +Y +T DK I++++ L GH V A + SG++D++V
Sbjct: 19 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYAHGGILVSGSTDRTVR 77
Query: 81 LWEVTT--GQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-------- 130
+W++ V + + ++ +++GS+DNT+ +W + S
Sbjct: 78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 137
Query: 131 ----------------------HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 168
H + + + GS D + W + + L
Sbjct: 138 HDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL 197
Query: 169 IHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCST 228
+ R S + +
Sbjct: 198 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLV 257
Query: 229 DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQIS 288
+ K I S+ + + L +
Sbjct: 258 SAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH 317
Query: 289 TLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 322
I + S+ L
Sbjct: 318 ANILK-DADQIWSVNFKGKTLVAAVEKDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.5 bits (90), Expect = 4e-04
Identities = 28/281 (9%), Positives = 68/281 (24%), Gaps = 12/281 (4%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
T V + + Y +T D + +W + + +G
Sbjct: 84 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 143
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120
++ V T S + + + +
Sbjct: 144 FHTPEENPYFVGVLRGHM---ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH 200
Query: 121 VMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 180
H +C S D+ I + + L + + L+ K +V++
Sbjct: 201 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAA 260
Query: 181 CSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240
R + + IL ++ +++ +G
Sbjct: 261 ADGSIRGWDANDYSRKFSYH-------HTNLSAITTFYVSDNILVSGSENQFNIYNLRSG 313
Query: 241 ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 281
+L+ + +I + + DG+ + L
Sbjct: 314 KLVHANILKDAD--QIWSVNFKGKTLVAAVEKDGQSFLEIL 352
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.4 bits (139), Expect = 3e-10
Identities = 29/309 (9%), Positives = 78/309 (25%), Gaps = 40/309 (12%)
Query: 13 QGAIRAVRFNVDGSYCLTCGSD----KKIKLWNPYRNLLLKTYGGHAHEVNDAT--AACD 66
+ + ++ + + + + +++ G + V
Sbjct: 17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG 76
Query: 67 SSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126
S + SG VI+W T + + V S + ++ +
Sbjct: 77 SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 136
Query: 127 KSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST------------------- 167
+ I + ++ S + + T
Sbjct: 137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA 196
Query: 168 --------------LIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVD 213
+ S + + ++ + +
Sbjct: 197 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF 256
Query: 214 ACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIE-CCLDSKDSQIFCGSS 272
A D Q T D +R++D T + ++++ K + + + + +I S
Sbjct: 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316
Query: 273 DGKIYKWQL 281
DG + ++L
Sbjct: 317 DGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.1 bits (107), Expect = 3e-06
Identities = 10/87 (11%), Positives = 31/87 (35%), Gaps = 3/87 (3%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
++ +D T G+D I++W+ + ++ + ++ +
Sbjct: 239 EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 298
Query: 61 ATAAC---DSSQIASGASDKSVILWEV 84
+ +I S + D ++ +E+
Sbjct: 299 QQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.3 bits (139), Expect = 4e-10
Identities = 38/363 (10%), Positives = 86/363 (23%), Gaps = 50/363 (13%)
Query: 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR----NLLLKTYGGHAHEV- 58
I +V S+ ++C D +K+W+ N K+Y H+
Sbjct: 5 ATANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62
Query: 59 --------NDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDS- 109
A + +A+ + ++ + +T ++ + + S
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122
Query: 110 --------------SVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIY 155
+++ T +W + L+ + G+ + +
Sbjct: 123 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182
Query: 156 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDAC 215
Q S IS G + + I
Sbjct: 183 PSQFATSVDIS----ERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238
Query: 216 FTRDCQCILTCSTD--------------ECLRLFDKATGELLEEYKGHKSGDFRIECCLD 261
F+ + E + T + + +
Sbjct: 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 298
Query: 262 SKDSQIFCGSSDGKIYKWQLVDSSQISTLI--HSVGKAVVNSLCSHPTRKHIMSACGNNV 319
+ DGK+ W + +I+TL + + L + +V
Sbjct: 299 DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 358
Query: 320 KLW 322
K
Sbjct: 359 KFL 361
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (93), Expect = 2e-04
Identities = 22/174 (12%), Positives = 45/174 (25%), Gaps = 26/174 (14%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPY----------------R 44
+ ++ +IR+V+F+ GS Y
Sbjct: 219 YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS 278
Query: 45 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKV---- 100
+ H+ V + + S D + W+V T + + H +
Sbjct: 279 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE 338
Query: 101 TCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKI 154
+ +E + ++DVK + + C D I
Sbjct: 339 DILAVDEHGDSLAEPG------VFDVKFLKKGWRSGMGADLNESLCCVCLDRSI 386
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 56.7 bits (135), Expect = 1e-09
Identities = 10/112 (8%), Positives = 30/112 (26%), Gaps = 3/112 (2%)
Query: 19 VRFNVDGSYCLTCGSDKKIKLWNP-YRNLLLKTYGGHAHEVNDATAACDSSQIASGASDK 77
RF D T + + + + G +
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN- 272
Query: 78 SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSR 129
+ +++ + ++ CV F++ + G N + +++ +
Sbjct: 273 RLAKYDLKQRKLIKA-ANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 323
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 46.3 bits (108), Expect = 2e-06
Identities = 21/240 (8%), Positives = 54/240 (22%), Gaps = 16/240 (6%)
Query: 16 IRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS 75
+ A ++++++ L K + + +
Sbjct: 103 VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGSLYVA 161
Query: 76 DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ 135
+ +V TG+ + S + M +R Q
Sbjct: 162 GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ 221
Query: 136 CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGN 195
L + + T + + + P + + N
Sbjct: 222 D--------PATADLLYGYLSVDL-KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN 272
Query: 196 NVKLWTAEED------YGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGH 249
+ + ++ F + + T L +F+ T E ++ K
Sbjct: 273 RLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 41.3 bits (95), Expect = 1e-04
Identities = 7/89 (7%), Positives = 25/89 (28%), Gaps = 2/89 (2%)
Query: 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 65
Q + + ++ + ++ + L+K H
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGVLNR-LAKYDLKQRKLIKAAN-LDHTYYCVAFDK 301
Query: 66 DSSQIASGASDKSVILWEVTTGQPVRRWR 94
++ G + + ++ T + V+ +
Sbjct: 302 KGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 40.9 bits (94), Expect = 1e-04
Identities = 16/138 (11%), Positives = 39/138 (28%), Gaps = 10/138 (7%)
Query: 52 GGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV-RRWREHASKVTCVKFNEDSS 110
+ A D A+ + ++ TG+ + + + +
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP 264
Query: 111 VVISGSQDNTVMMWDVKSRS--------HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162
I G N + +D+K R H D K +++ G + + +
Sbjct: 265 NQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 323
Query: 163 SQISTLIHSVGKAVVNSL 180
++ + G +
Sbjct: 324 EKVKNIKLPGGDMSTTTP 341
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.5 bits (129), Expect = 6e-09
Identities = 30/326 (9%), Positives = 90/326 (27%), Gaps = 48/326 (14%)
Query: 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWN---PYRNLLLKTYGGHAHEVNDA 61
VQ + I ++ S L D + ++ +N+ L + H +
Sbjct: 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
Query: 62 TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTV 121
++ + + IL G P + + + +
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG 122
Query: 122 MMWDVKSRS-----------------HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 164
++ + R+ +D+ S++ G ++ ++ ++L
Sbjct: 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED 182
Query: 165 ISTLIHSVG--KAVVNSLCSHPTRKHIMSACGNN-VKLW--------------------- 200
+ I G + + ++ + + V +
Sbjct: 183 DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR 242
Query: 201 -TAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECC 259
++ P+ F+ + + T +D + ++ T + ++ +
Sbjct: 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED---SVVK 299
Query: 260 LDSKDSQIFCGSSDGKIYKWQLVDSS 285
+ D+ + +SD +D +
Sbjct: 300 IACSDNILCLATSDDTFKTNAAIDQT 325
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 4e-06
Identities = 37/280 (13%), Positives = 86/280 (30%), Gaps = 42/280 (15%)
Query: 88 QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS-----------HHPIQC 136
Q V+ + ++ +K S+++ S D ++ ++ ++ HP+ C
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 137 CLDSKDSQ--IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG 194
C ++ I+ G+ G+I K L+ S L ++ + +C + K I ++
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121
Query: 195 NNVKLWTAEED-------------YGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGE 241
+++ + + ++ + ++ F E
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181
Query: 242 LLEEYKGHKSGDFRIECCLDSKDSQ--IFCGSSDGKIYKWQLVDSSQISTLI-------- 291
++I Q C S DG++ D
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241
Query: 292 -----HSVGKAVVNSLCSHPTRKHIMSACGNN-VKLWTAE 325
+ VNS+ P K + +A + + W +
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 8e-05
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 1/85 (1%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
+ + ++ F+ + T GSD I WN +K + +E +
Sbjct: 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSV 297
Query: 61 ATAACDSSQIASGASDKSVILWEVT 85
AC + + SD +
Sbjct: 298 VKIACSDNILCLATSDDTFKTNAAI 322
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.1 bits (120), Expect = 6e-08
Identities = 34/291 (11%), Positives = 92/291 (31%), Gaps = 24/291 (8%)
Query: 47 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFN 106
+LKT GH + A + + SG+ D ++ W ++ ++H++ + + +
Sbjct: 5 VLKTISGHNKGIT----ALTVNPLISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNS 55
Query: 107 EDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIY-----KWQLVD 161
+ D + K + + D ++D + ++
Sbjct: 56 KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115
Query: 162 SSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQ 221
S ++++ +V + I +++++ + + +
Sbjct: 116 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 175
Query: 222 CILTCSTDECLRLFDKATGE---------LLEEYKGHKSGDFRIECCLDSKDSQIFCGSS 272
I + L+D + E + + + ++ + GS
Sbjct: 176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 235
Query: 273 DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWT 323
D I+ + + +I +++ K VN+L + S +K W
Sbjct: 236 DTNIFIYSVKRPMKIIKALNA-HKDGVNNLLWETPSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.3 bits (110), Expect = 1e-06
Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 2/101 (1%)
Query: 27 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEV-T 85
S + +R + E + +A+G+ D ++ ++ V
Sbjct: 187 LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 246
Query: 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126
+ ++ H V + + S++V S D + W+V
Sbjct: 247 PMKIIKALNAHKDGVNNLLWETPSTLV-SSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.6 bits (98), Expect = 3e-05
Identities = 32/298 (10%), Positives = 93/298 (31%), Gaps = 35/298 (11%)
Query: 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAA 64
++TI I A+ + ++ D +I W+ + H++ +
Sbjct: 5 VLKTISGHNKGITALTV----NPLISGSYDGRIMEWS-----SSSMHQDHSNLIVSL-DN 54
Query: 65 CDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 124
+ + +S + D ++ + +T + + + ++ + +
Sbjct: 55 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAV--LTNDDDLLILQSFTGD 112
Query: 125 DVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 184
+KS + + + + G +G + + ++S + + +A + + P
Sbjct: 113 IIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISP 172
Query: 185 TRKHIMSACGNNVKLWTAEEDYGQEPIVD-------------------ACFTRDCQCILT 225
+ +I + L + + + + T
Sbjct: 173 SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT 232
Query: 226 CSTDECLRLFDKAT-GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 282
S D + ++ ++++ HK G + L S + +D I +W +V
Sbjct: 233 GSLDTNIFIYSVKRPMKIIKALNAHKDG---VNNLLWETPSTLVSSGADACIKRWNVV 287
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.8 bits (88), Expect = 5e-04
Identities = 28/245 (11%), Positives = 62/245 (25%), Gaps = 13/245 (5%)
Query: 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH---HPIQCCLDSKD 142
+ ++ H +T + + +ISGS D +M W S + I +SK
Sbjct: 2 HDEVLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKA 57
Query: 143 SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTA 202
+ S D + + S + + ++ +
Sbjct: 58 QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK-- 115
Query: 203 EEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDS 262
A + +++F + E+ + K S
Sbjct: 116 --SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK--PSYISIS 171
Query: 263 KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 322
+ S ++ T + + +N++ P K +
Sbjct: 172 PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 231
Query: 323 TAEED 327
T D
Sbjct: 232 TGSLD 236
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 49.1 bits (115), Expect = 3e-07
Identities = 10/112 (8%), Positives = 34/112 (30%), Gaps = 5/112 (4%)
Query: 20 RFNVDGSYCLTCGSDKKIKLWNPYRNL-LLKTYGGHAHEVNDATAACDSSQIASGASDKS 78
+ G Y L + + + ++ + ++
Sbjct: 240 MTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV 299
Query: 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 130
++ ++V T + E + +T ++ + D V+ D + + ++
Sbjct: 300 LLKYDVKTRKV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE 347
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 44.9 bits (104), Expect = 7e-06
Identities = 22/187 (11%), Positives = 46/187 (24%), Gaps = 19/187 (10%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNP-------YRNLLLKTYGG 53
ME + + A F+ D +
Sbjct: 166 MEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL 225
Query: 54 HAHEVNDATAACDSSQIASGASDKSVILW-------EVTTGQPVRRWREHASKVTCVKFN 106
N S +G D + + + + + +
Sbjct: 226 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG 285
Query: 107 EDSSVVISGSQDNTVMMWDVKSR-----SHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVD 161
E ++ + ++ +DVK+R ++ L + + DGKIY + L
Sbjct: 286 EFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345
Query: 162 SSQISTL 168
T+
Sbjct: 346 PEDERTV 352
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 43.7 bits (101), Expect = 2e-05
Identities = 30/320 (9%), Positives = 68/320 (21%), Gaps = 49/320 (15%)
Query: 12 KQGAIRAVRFNVDGSYCLTCGSD--KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQ 69
+ IR VR D G+ + +++ R + + + V +
Sbjct: 41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY-RTGKAEKFEENLGNVFAMGVDRNGKF 99
Query: 70 IAS----------GASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN 119
+ E + + + + G
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159
Query: 120 TVMMWDVKSRSHHP--------IQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS 171
+ ++D++ R D+ ++ S V + ++
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 219
Query: 172 VG-----KAVVNSLCSHPTRKHIMSACGNNVKLWT---------------AEEDYGQEPI 211
N P + + ++ +
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279
Query: 212 VDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCG 270
L +D T ++ E S D + +
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRL-------SADRKTVMVR 332
Query: 271 SSDGKIYKWQLVDSSQISTL 290
DGKIY + L T+
Sbjct: 333 KDDGKIYTFPLEKPEDERTV 352
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 42.2 bits (97), Expect = 5e-05
Identities = 14/245 (5%), Positives = 50/245 (20%), Gaps = 26/245 (10%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
+ + + I +++ +
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-FAATTENSHDYA 183
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNT 120
DS + + + + + + + + ++ S +
Sbjct: 184 PAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSE 243
Query: 121 VMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 180
+D+ +D D ++ + +
Sbjct: 244 AGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILI---------------------YSVP 282
Query: 181 CSHPTRKHIMSACGNN-VKLW---TAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFD 236
+ A + + T + + + D + D + ++ D + F
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFP 342
Query: 237 KATGE 241
E
Sbjct: 343 LEKPE 347
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.0 bits (115), Expect = 3e-07
Identities = 12/124 (9%), Positives = 33/124 (26%), Gaps = 2/124 (1%)
Query: 6 VQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC 65
Q A D + + + +V + A
Sbjct: 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI-MDVFYFSTAV 248
Query: 66 DSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWD 125
+ ++ + + + +++ ++R V + D S V G + +D
Sbjct: 249 NPAKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307
Query: 126 VKSR 129
++
Sbjct: 308 AETL 311
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.5 bits (111), Expect = 1e-06
Identities = 23/312 (7%), Positives = 67/312 (21%), Gaps = 62/312 (19%)
Query: 70 IASGASDKSVILWEVTTGQPVRRWR--EHASKVTCVKFNEDSS-VVISGSQDNTVMMWDV 126
I + A +++ + + + + ++ +++ D+
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 127 KSR-----------------------SHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSS 163
+ S + ++ + + + L D+
Sbjct: 64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123
Query: 164 QISTLIHSVGKAVVNSLCSHPTRKHIMS-----------------------------ACG 194
+S + L + A
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQP 183
Query: 195 NNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDF 254
+ + +W E G +D + L D TGE+
Sbjct: 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA---MREVRIMD 240
Query: 255 RIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 314
++ + + + L ++ I + S+ +
Sbjct: 241 VFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHS---YYSVNVSTDGSTVWLG 297
Query: 315 C-GNNVKLWTAE 325
++ + AE
Sbjct: 298 GALGDLAAYDAE 309
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.5 bits (98), Expect = 5e-05
Identities = 25/297 (8%), Positives = 56/297 (18%), Gaps = 57/297 (19%)
Query: 14 GAIRAVRFNVDGSYCLTCGS-DKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC-----DS 67
G + + + + L E + D
Sbjct: 34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDG 93
Query: 68 SQIASGASDKSVILWEVTTGQP-----------VRRWREHASKVTCVKFNEDSSVVISGS 116
+A S + L R+ E ++T + + D S +
Sbjct: 94 KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG 153
Query: 117 QDNTVMMWD------------------------------VKSRSHHPIQCCLDSKDSQIF 146
+D VM + S
Sbjct: 154 RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPAD 213
Query: 147 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE-- 204
+ + L + + + + K N ++ + E+
Sbjct: 214 PTAYRTGLLTMDLETGEMAMREVRIMDVFYFS--TAVNPAKTRAFGAYNVLESFDLEKNA 271
Query: 205 -----DYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRI 256
+ D + L +D T E + + +
Sbjct: 272 SIKRVPLPHSY-YSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.2 bits (87), Expect = 0.001
Identities = 10/100 (10%), Positives = 31/100 (31%), Gaps = 11/100 (11%)
Query: 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGS----------DKKIKLWNPYRNLLLKTYGGH 54
+ T+D + G + + + + ++ ++ +N +K
Sbjct: 220 GLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-L 278
Query: 55 AHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 94
H + D S + G + + ++ T + +
Sbjct: 279 PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.3 bits (108), Expect = 3e-06
Identities = 13/145 (8%), Positives = 38/145 (26%), Gaps = 25/145 (17%)
Query: 10 DCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRN--LLLKTYGGHAHEVNDAT----- 62
+ I ++ + KI + L
Sbjct: 191 PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG 250
Query: 63 ---------------AACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNE 107
+ + + V++ + TG+ + ++ E ++ + ++
Sbjct: 251 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF-EMGHEIDSINVSQ 309
Query: 108 D--SSVVISGSQDNTVMMWDVKSRS 130
D + + D T+ + D +S
Sbjct: 310 DEKPLLYALSTGDKTLYIHDAESGE 334
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.0 bits (102), Expect = 2e-05
Identities = 29/281 (10%), Positives = 69/281 (24%), Gaps = 27/281 (9%)
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVV-------- 112
A A+ S+IA G V +++ T P + V + +
Sbjct: 62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLL 121
Query: 113 -ISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW----QLVDSSQIST 167
S V + D++ ++ + IF + D +
Sbjct: 122 FYQFSPAPAVGVVDLEGKAF--KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG 179
Query: 168 LIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCS 227
V + S Y + + D + +
Sbjct: 180 TPEITHTEVFHPEDEFLINHPAYSQKAG----RLVWPTYTGKIHQIDLSSGDAKFLPAVE 235
Query: 228 TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 287
D ++ H++ D L + + ++ + ++
Sbjct: 236 ALTEAERADGWRPGGWQQVAYHRALDRI--YLLVDQRDEWRHKTASRFVVVLDAKTGERL 293
Query: 288 STLIHSVGKAVVNSLCSHPTRKHIMSACG---NNVKLWTAE 325
+ ++S+ K ++ A + + AE
Sbjct: 294 AKFEMGHE---IDSINVSQDEKPLLYALSTGDKTLYIHDAE 331
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.5 bits (93), Expect = 2e-04
Identities = 31/309 (10%), Positives = 72/309 (23%), Gaps = 62/309 (20%)
Query: 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGS----------DKKIKLWNPYRNLLLKTYGG 53
+ ID G + DGS+ + +++++P L
Sbjct: 39 RVIGMID--GGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIEL 96
Query: 54 HAHEVNDA---------TAACDSSQIASGASDKSVILWEVTTGQPVRRWREHAS------ 98
T + + +V + ++ R
Sbjct: 97 PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT 156
Query: 99 -KVTCVKFNEDSS-VVISGSQDNTVMMWDVKSRSHHPI----QCCLDSKDSQIFCGSSDG 152
T D S ++ + T + + K ++ + G
Sbjct: 157 APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTG 216
Query: 153 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQ---- 208
KI++ L + P ++ +++ + +
Sbjct: 217 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHK 276
Query: 209 -----------------------EPIVDACFTRDCQCIL--TCSTDECLRLFDKATGELL 243
I ++D + +L + D+ L + D +GE L
Sbjct: 277 TASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 336
Query: 244 EEYKGHKSG 252
G
Sbjct: 337 RSVNQLGHG 345
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.2 bits (92), Expect = 3e-04
Identities = 11/110 (10%), Positives = 32/110 (29%), Gaps = 3/110 (2%)
Query: 1 MEYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVND 60
Q + + R + + + + + L + HE++
Sbjct: 246 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDS 304
Query: 61 ATAACDSSQ--IASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED 108
+ D A DK++ + + +G+ +R + + +
Sbjct: 305 INVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.0 bits (105), Expect = 7e-06
Identities = 13/153 (8%), Positives = 39/153 (25%), Gaps = 18/153 (11%)
Query: 61 ATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKF--------NEDSSVV 112
A A+ ++ A G V +++ T P+ + V + ++
Sbjct: 80 ALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLL 139
Query: 113 ISGSQDNTVMMWDVKSR---SHHPIQCC---LDSKDSQIFCGSSDGKIYKWQLVDSSQIS 166
+ V C + + GS + L + +
Sbjct: 140 FFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199
Query: 167 TLIHS----VGKAVVNSLCSHPTRKHIMSACGN 195
++ + + ++ + + +
Sbjct: 200 GIVGAQCTGAQNCSSQAAQANYPGMLVWAVASS 232
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.0 bits (100), Expect = 3e-05
Identities = 13/137 (9%), Positives = 30/137 (21%), Gaps = 22/137 (16%)
Query: 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASG 73
+ +A + N G S + G+ Q+ +
Sbjct: 212 CSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAK 271
Query: 74 ASDKSVI-------------------LWEVTTGQPVRRWREHASKVTCVKFNED--SSVV 112
+ I + GQ + + +D S
Sbjct: 272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNY 330
Query: 113 ISGSQDNTVMMWDVKSR 129
+ + + ++D S
Sbjct: 331 ANSAGTEVLDIYDAASD 347
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 42.7 bits (99), Expect = 4e-05
Identities = 18/276 (6%), Positives = 60/276 (21%), Gaps = 46/276 (16%)
Query: 22 NVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDAT------AACDSSQ--IASG 73
+ + +++++P L + C SS +
Sbjct: 83 STSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFL 142
Query: 74 ASDKSVILWEVTTGQPVRRWRE-------HASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126
+ V + + + T + +S+ S V
Sbjct: 143 FGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIV 202
Query: 127 KSR---SHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH 183
++ + + + + + I + + + ++ +
Sbjct: 203 GAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFR 262
Query: 184 PTRKHIMSACGNNVKLWTAEEDYG--------------------------QEPIVDACFT 217
+++ N + ++
Sbjct: 263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAA 322
Query: 218 RDCQCIL--TCSTDECLRLFDKATGELLEEYKGHKS 251
+D + E L ++D A+ + + K
Sbjct: 323 QDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 44.0 bits (103), Expect = 2e-05
Identities = 27/198 (13%), Positives = 56/198 (28%), Gaps = 30/198 (15%)
Query: 15 AIRAVRFNVDGSYCLTCGSDKKIKLWN-----PYRNLLLKTYGGHAHEVNDATAACDSSQ 69
A+ R + G Y G D K+ + + P +K +
Sbjct: 63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY 122
Query: 70 -IASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVV-ISGSQDNTVMMWDVK 127
IA ++ + T +P + +++ + V I S + +VK
Sbjct: 123 AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 182
Query: 128 SRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 187
GKI D + + T S + ++ + +
Sbjct: 183 ----------------------ETGKILLVDYTDLNNLKTTEISAER-FLHDGGLDGSHR 219
Query: 188 HIMSACGNNVKLWTAEED 205
+ ++A KL +
Sbjct: 220 YFITAANARNKLVVIDTK 237
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 37.5 bits (86), Expect = 0.002
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 76 DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH 131
+ L + +T + + V + + + +D V M D+ +
Sbjct: 41 AGQIALIDGSTYEIKTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWMKEP 95
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 42.6 bits (99), Expect = 4e-05
Identities = 14/155 (9%), Positives = 49/155 (31%), Gaps = 15/155 (9%)
Query: 72 SGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV---KS 128
+ + L + + + V+ + V + + ++ +D + M D+ +
Sbjct: 37 TLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEP 95
Query: 129 RSHHPIQCCLDSKD-----------SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVV 177
I+ ++++ G+ + ++ + ++ + G V
Sbjct: 96 TKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD 155
Query: 178 NSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIV 212
R + A + + ++ G+ +V
Sbjct: 156 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV 190
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 36.5 bits (83), Expect = 0.004
Identities = 22/132 (16%), Positives = 43/132 (32%), Gaps = 8/132 (6%)
Query: 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLL-----LKTYGGHAHE 57
V+ ID A+ R + G Y L G D +I + + + +K
Sbjct: 52 KKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV 110
Query: 58 VNDATAACDSSQ-IASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSV-VISG 115
+ + IA + + T +P + V ++ + V I
Sbjct: 111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA 170
Query: 116 SQDNTVMMWDVK 127
S ++ + +VK
Sbjct: 171 SHEHPEFIVNVK 182
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 39.1 bits (89), Expect = 5e-04
Identities = 9/88 (10%), Positives = 25/88 (28%), Gaps = 2/88 (2%)
Query: 72 SGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNED-SSVVISGSQDNTVMMWDVKSRS 130
+ + ++ + +VT+ + S + D + V ++ + N V + D + +
Sbjct: 7 ANSESDNISVIDVTSNKVTATI-PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 131 HHPIQCCLDSKDSQIFCGSSDGKIYKWQ 158
S
Sbjct: 66 VIATVPAGSSPQGVAVSPDGKQVYVTNM 93
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 341 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.98 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.96 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.96 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.96 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.94 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.94 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.92 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.92 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.91 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.87 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.87 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.87 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.86 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.8 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.8 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.76 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.73 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.62 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.6 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.58 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.49 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.49 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.44 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.42 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.4 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.38 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.37 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.35 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.28 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.28 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.26 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.26 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.04 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.99 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.98 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.9 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.75 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.63 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 98.52 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.42 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.35 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.32 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.32 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.29 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.18 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 98.14 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.13 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.12 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.92 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.8 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.77 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.71 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.69 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.68 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.58 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.55 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.52 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.97 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.77 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.72 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.42 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 95.94 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.85 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.57 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.1 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 94.45 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 94.15 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 93.59 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 93.29 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 88.74 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 88.46 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 87.55 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 85.15 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.6e-48 Score=315.01 Aligned_cols=300 Identities=20% Similarity=0.286 Sum_probs=259.9
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
...++|+||.++|++++|+|++++||||+.||+|+|||+.+++.+.++++|...|.+++|+|++.+++++..++.+..|+
T Consensus 8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (317)
T d1vyhc1 8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 87 (317)
T ss_dssp SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------cCeEE-eecCCCceEEEeeccCeE
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HPIQC-CLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~-~~~~~~~~~~~~~~~g~i 154 (341)
....+....+..|...+.++.|+|+++.+++++.|+.+++||+++++. ..... ...+.+..+++++.|+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v 167 (317)
T d1vyhc1 88 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 167 (317)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeE
Confidence 999998888999999999999999999999999999999999987542 22333 344556789999999999
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEE
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRL 234 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 234 (341)
++|+..+.+....+.. +...+..+.++|++....... ...........++.++++++.|+.|++
T Consensus 168 ~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~d~~i~~ 231 (317)
T d1vyhc1 168 RVWVVATKECKAELRE--HRHVVECISWAPESSYSSISE--------------ATGSETKKSGKPGPFLLSGSRDKTIKM 231 (317)
T ss_dssp EEEETTTCCEEEEECC--CSSCEEEEEECCSCGGGGGGG--------------CCSCC-------CCEEEEEETTSEEEE
T ss_pred EEEeeccceeeEEEec--CCCCceEEEEeeccccceeec--------------cccceeeeeccCCceeEeccCCCEEEE
Confidence 9999999887766654 445688899988875433221 122233344567788999999999999
Q ss_pred EeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEe
Q psy17863 235 FDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 314 (341)
Q Consensus 235 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 314 (341)
||+++++++..+.+|...+..+ +++|++++|++|+.||.|++||+.+++++..+. +|..+|++++|+|++++|+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~h~~~V~~~~~s~~~~~l~s~ 307 (317)
T d1vyhc1 232 WDVSTGMCLMTLVGHDNWVRGV--LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--AHEHFVTSLDFHKTAPYVVTG 307 (317)
T ss_dssp EETTTTEEEEEEECCSSCEEEE--EECSSSSCEEEEETTTEEEEECCTTSCCCEEEE--CCSSCEEEEEECSSSSCEEEE
T ss_pred EECCCCcEEEEEeCCCCCEEEE--EECCCCCEEEEEECCCeEEEEECCCCcEEEEEc--CCCCCEEEEEEcCCCCEEEEE
Confidence 9999999999999999998887 899999999999999999999999999999998 899999999999999999999
Q ss_pred C-CCcEEEEE
Q psy17863 315 C-GNNVKLWT 323 (341)
Q Consensus 315 ~-d~~i~vw~ 323 (341)
+ ||+|+|||
T Consensus 308 s~Dg~i~iWd 317 (317)
T d1vyhc1 308 SVDQTVKVWE 317 (317)
T ss_dssp ETTSEEEEEC
T ss_pred eCCCeEEEeC
Confidence 9 99999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-47 Score=311.55 Aligned_cols=278 Identities=12% Similarity=0.158 Sum_probs=235.9
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCccee-----eEecCcccceeEEEEecCCCEEEEecCCCc
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLL-----KTYGGHAHEVNDATAACDSSQIASGASDKS 78 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 78 (341)
+.++++ .|...|++++|+|+|++||+|+ ||.|+|||+.++... ....+|.+.|.+++|+|++++|++++.||.
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~ 120 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence 455566 5999999999999999999987 899999998765322 233578999999999999999999999999
Q ss_pred EEEEECCCC--ceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEE
Q psy17863 79 VILWEVTTG--QPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYK 156 (341)
Q Consensus 79 i~iw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~ 156 (341)
|++||+... +....+..|...+.+++|+|++.++++++.|+.+++|++++++.
T Consensus 121 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~------------------------- 175 (337)
T d1gxra_ 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL------------------------- 175 (337)
T ss_dssp EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------------------------
Confidence 999998754 45667788999999999999999999999999999999876431
Q ss_pred EEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecC
Q psy17863 157 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTD 229 (341)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d 229 (341)
... ...+...+.++++++++..++.++ ++.+++|+++... +..+|.+++|+|+++++++++.|
T Consensus 176 --------~~~--~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d 245 (337)
T d1gxra_ 176 --------VRQ--FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMES 245 (337)
T ss_dssp --------EEE--ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred --------ccc--ccccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceeccc
Confidence 111 111345578888888888877765 5888899886543 67899999999999999999999
Q ss_pred CeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCc
Q psy17863 230 ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 309 (341)
Q Consensus 230 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 309 (341)
+.+++||+++++.. ....|...+..+ +|+|++++|++++.||.|++||+.+++.+..+. |...|.+++|+|+++
T Consensus 246 ~~i~i~d~~~~~~~-~~~~~~~~i~~v--~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~s~d~~ 319 (337)
T d1gxra_ 246 SNVEVLHVNKPDKY-QLHLHESCVLSL--KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---ESSSVLSCDISVDDK 319 (337)
T ss_dssp SCEEEEETTSSCEE-EECCCSSCEEEE--EECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECTTSC
T ss_pred cccccccccccccc-cccccccccceE--EECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc---CCCCEEEEEEeCCCC
Confidence 99999999887765 456788888877 899999999999999999999999999887764 778999999999999
Q ss_pred EEEEeC-CCcEEEEEc
Q psy17863 310 HIMSAC-GNNVKLWTA 324 (341)
Q Consensus 310 ~l~~~~-d~~i~vw~~ 324 (341)
+|++++ |++|+|||+
T Consensus 320 ~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 320 YIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEEETTSCEEEEEE
T ss_pred EEEEEeCCCeEEEEEE
Confidence 999999 999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-46 Score=312.52 Aligned_cols=283 Identities=19% Similarity=0.320 Sum_probs=235.8
Q ss_pred eeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec------------------CcccceeEEEEecCCCEEE
Q psy17863 10 DCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG------------------GHAHEVNDATAACDSSQIA 71 (341)
Q Consensus 10 ~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~l~ 71 (341)
.+|++.|+|++|+|||++||+|+ |+.|+|||+.+++.+..+. .|...|++++|+|++++|+
T Consensus 59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~ 137 (388)
T d1erja_ 59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137 (388)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence 36999999999999999999987 8999999999988776664 3566799999999999999
Q ss_pred EecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC--------cCeEEeecC-CC
Q psy17863 72 SGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH--------HPIQCCLDS-KD 142 (341)
Q Consensus 72 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~-~~ 142 (341)
+|+.||.|++||...++.+..+.+|...|.++.+++++..+++++.++.+++||.++... ........+ .+
T Consensus 138 s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (388)
T d1erja_ 138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG 217 (388)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTC
T ss_pred ecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999887531 122223333 45
Q ss_pred ceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCE
Q psy17863 143 SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQC 222 (341)
Q Consensus 143 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (341)
..+++++.||.+++|+..+......+..... ....|..+|.+++|+|++++
T Consensus 218 ~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~-----------------------------~~~~h~~~v~~l~~s~~~~~ 268 (388)
T d1erja_ 218 KYIAAGSLDRAVRVWDSETGFLVERLDSENE-----------------------------SGTGHKDSVYSVVFTRDGQS 268 (388)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEEC-----------------------------------CCCSSCEEEEEECTTSSE
T ss_pred CeEEEEcCCCeEEEeecccCccceeeccccc-----------------------------cccCCCCCEEEEEECCCCCE
Confidence 6888999999999999988776555432110 01124678999999999999
Q ss_pred EEEeecCCeEEEEeccccce------------eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEE
Q psy17863 223 ILTCSTDECLRLFDKATGEL------------LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 290 (341)
Q Consensus 223 l~~~~~d~~i~i~d~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 290 (341)
|++++.|+.|++||+.+++. ......|...+..+ +++|++++|++|+.||.|++||+++++++..+
T Consensus 269 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l 346 (388)
T d1erja_ 269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV--ATTQNDEYILSGSKDRGVLFWDKKSGNPLLML 346 (388)
T ss_dssp EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEE--EECGGGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEE--EECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 99999999999999876543 33445677777777 89999999999999999999999999999999
Q ss_pred EeeeeccceEEEEE------cCCCcEEEEeC-CCcEEEEEccc
Q psy17863 291 IHSVGKAVVNSLCS------HPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 291 ~~~~~~~~v~~~~~------~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
. +|.+.|.++++ +|++.+|++++ ||+|+||++++
T Consensus 347 ~--~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k 387 (388)
T d1erja_ 347 Q--GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387 (388)
T ss_dssp E--CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred e--CCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeeee
Confidence 8 89999999975 67899999999 99999999864
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7.4e-45 Score=296.79 Aligned_cols=281 Identities=17% Similarity=0.316 Sum_probs=236.5
Q ss_pred CceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
..+..++|+||.++|++++|+|++++||+|+.||+|+|||+.+++.+..+..|...|.+++|+|+++++++++.|+.+++
T Consensus 44 ~~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~ 123 (340)
T d1tbga_ 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred ceeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeec
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCc----eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC---------CcCeEEeecCCCceEEEe
Q psy17863 82 WEVTTGQ----PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS---------HHPIQCCLDSKDSQIFCG 148 (341)
Q Consensus 82 w~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~ 148 (341)
|+..... ....+.+|........... +..+.....+.....+...... ..............++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (340)
T d1tbga_ 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp EESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccccceeccccccccccccccc-ccccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence 9987643 3455666777666665554 4467777778888888766532 122333445556688889
Q ss_pred eccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeec
Q psy17863 149 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCST 228 (341)
Q Consensus 149 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 228 (341)
+.|+.+++||+++.+....+.. |..+|++++|+|++++|++++.
T Consensus 203 ~~d~~v~i~d~~~~~~~~~~~~------------------------------------h~~~i~~v~~~p~~~~l~s~s~ 246 (340)
T d1tbga_ 203 ACDASAKLWDVREGMCRQTFTG------------------------------------HESDINAICFFPNGNAFATGSD 246 (340)
T ss_dssp ETTTEEEEEETTTTEEEEEECC------------------------------------CSSCEEEEEECTTSSEEEEEET
T ss_pred ecCceEEEEECCCCcEEEEEeC------------------------------------CCCCeEEEEECCCCCEEEEEeC
Confidence 9999999999988766554422 3567889999999999999999
Q ss_pred CCeEEEEeccccceeeeec--CcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcC
Q psy17863 229 DECLRLFDKATGELLEEYK--GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 306 (341)
Q Consensus 229 d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 306 (341)
|+.|++||+...+.+..+. .+...+..+ +++|++++|++|+.||.|++||+.+++++..+. +|..+|++++|+|
T Consensus 247 d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~--~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~H~~~V~~l~~s~ 322 (340)
T d1tbga_ 247 DATCRLFDLRADQELMTYSHDNIICGITSV--SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA--GHDNRVSCLGVTD 322 (340)
T ss_dssp TSCEEEEETTTTEEEEEECCTTCCSCEEEE--EECSSSCEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEECT
T ss_pred CCeEEEEeecccccccccccccccCceEEE--EECCCCCEEEEEECCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEeC
Confidence 9999999999888776654 444556666 899999999999999999999999999999998 8999999999999
Q ss_pred CCcEEEEeC-CCcEEEEE
Q psy17863 307 TRKHIMSAC-GNNVKLWT 323 (341)
Q Consensus 307 ~~~~l~~~~-d~~i~vw~ 323 (341)
++++|++++ ||.|+|||
T Consensus 323 d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 323 DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TSSCEEEEETTSCEEEEC
T ss_pred CCCEEEEEccCCEEEEeC
Confidence 999999999 99999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.8e-44 Score=289.38 Aligned_cols=274 Identities=14% Similarity=0.181 Sum_probs=226.2
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCcee-
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV- 90 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~- 90 (341)
+.+.+..++++|+|+.|+.++ ++.|.+|++.+++....+.+|...|++++|+|++++|++|+.||+|++||+.+++..
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~ 94 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc
Confidence 456777899999999999976 678999999999999999999999999999999999999999999999999887654
Q ss_pred -eeecccCccEEEEEEcCCCcEEEEecCC--CeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceee
Q psy17863 91 -RRWREHASKVTCVKFNEDSSVVISGSQD--NTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST 167 (341)
Q Consensus 91 -~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~ 167 (341)
..+..|..+|.+++|+|++++|++++.+ ..+++|++++++ ....
T Consensus 95 ~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~---------------------------------~~~~ 141 (311)
T d1nr0a1 95 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT---------------------------------SNGN 141 (311)
T ss_dssp EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC---------------------------------BCBC
T ss_pred ccccccccCcccccccccccccccccccccccccccccccccc---------------------------------cccc
Confidence 4577899999999999999999988754 447777766543 2222
Q ss_pred eEeeecCceEEEEEECCCCce-EEEeC-CCceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEecc
Q psy17863 168 LIHSVGKAVVNSLCSHPTRKH-IMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 238 (341)
+. .+...|.+++|+|++++ +++++ ++.+++||++... +..+|.++.++|+++++++++.|+.+++||..
T Consensus 142 l~--~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~ 219 (311)
T d1nr0a1 142 LT--GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 219 (311)
T ss_dssp CC--CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred cc--ccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccc
Confidence 22 23456899999999986 45444 6899999998644 67899999999999999999999999999999
Q ss_pred ccceeeeec-------CcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEee-eeccceEEEEEcCCCcE
Q psy17863 239 TGELLEEYK-------GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS-VGKAVVNSLCSHPTRKH 310 (341)
Q Consensus 239 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ 310 (341)
+++.+..+. +|...|..+ +|+|++++|++|+.||.|+|||+++++++..+... .....+.++.| ++..
T Consensus 220 ~~~~~~~~~~~~~~~~~h~~~V~~~--~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~ 295 (311)
T d1nr0a1 220 DGTKTGVFEDDSLKNVAHSGSVFGL--TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQA 295 (311)
T ss_dssp TCCEEEECBCTTSSSCSSSSCEEEE--EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSC
T ss_pred ccccccccccccccccccccccccc--ccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCE
Confidence 887766553 577888877 89999999999999999999999999998888721 11234445555 4567
Q ss_pred EEEeC-CCcEEEEEcc
Q psy17863 311 IMSAC-GNNVKLWTAE 325 (341)
Q Consensus 311 l~~~~-d~~i~vw~~~ 325 (341)
|++++ ||.|++||++
T Consensus 296 l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 296 LVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEETTCCEEEEETT
T ss_pred EEEEECCCEEEEEeCC
Confidence 88888 9999999974
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=9.3e-44 Score=285.48 Aligned_cols=282 Identities=14% Similarity=0.195 Sum_probs=217.7
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec-CcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-GHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
+..++++||.++|++++|+|++++|++|+.||+|++||+.+++....+. .|...|++++|+|++++ ++++.|+.+++|
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~ 81 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVV 81 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEE
T ss_pred ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEe
Confidence 5789999999999999999999999999999999999999999888874 68999999999999874 556678999999
Q ss_pred ECCCCce---eeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC----CcCeE-EeecCCCceEEEeeccCeE
Q psy17863 83 EVTTGQP---VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS----HHPIQ-CCLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 83 ~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~-~~~~~~~~~~~~~~~~g~i 154 (341)
+...... ......+...+.+++|+|+++.+++++ ++.+.+|+..... ..... ....+.+..+++++.+|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 160 (299)
T d1nr0a2 82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV 160 (299)
T ss_dssp CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred ccCCccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence 9865432 223345778899999999998777665 5689999854321 11122 2233444566677777777
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEE
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRL 234 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 234 (341)
++||+++.+....... .+..+|.+++|+|+++++++++.|+.|++
T Consensus 161 ~~~d~~~~~~~~~~~~-----------------------------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~ 205 (299)
T d1nr0a2 161 HVYKLSGASVSEVKTI-----------------------------------VHPAEITSVAFSNNGAFLVATDQSRKVIP 205 (299)
T ss_dssp EEEEEETTEEEEEEEE-----------------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cccccccccccccccc-----------------------------------ccccccccccccccccccccccccccccc
Confidence 7777665432221111 14567899999999999999999999999
Q ss_pred Eecccccee---eeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeee-eccceEEEEEcCCCcE
Q psy17863 235 FDKATGELL---EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV-GKAVVNSLCSHPTRKH 310 (341)
Q Consensus 235 ~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 310 (341)
||+.++... ..+.+|...+.++ +|+|++++|++|+.||.|++||++++.......... +...+.++.| +++++
T Consensus 206 ~~~~~~~~~~~~~~~~~h~~~v~~l--~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~ 282 (299)
T d1nr0a2 206 YSVANNFELAHTNSWTFHTAKVACV--SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETT 282 (299)
T ss_dssp EEGGGTTEESCCCCCCCCSSCEEEE--EECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTE
T ss_pred ccccccccccccccccccccccccc--cccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCE
Confidence 999877554 4566788888887 899999999999999999999998876654444223 3456776665 56778
Q ss_pred EEEeC-CCcEEEEEcc
Q psy17863 311 IMSAC-GNNVKLWTAE 325 (341)
Q Consensus 311 l~~~~-d~~i~vw~~~ 325 (341)
|++++ |+.|++||++
T Consensus 283 l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 283 IVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEEETTSCEEEEECC
T ss_pred EEEEeCCCEEEEEecc
Confidence 99999 9999999984
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.1e-44 Score=295.09 Aligned_cols=281 Identities=13% Similarity=0.176 Sum_probs=228.9
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcc--eeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCce-
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNL--LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQP- 89 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~- 89 (341)
.++|+|++|+|||++||+|+.||.|+|||..+++ .+..+++|.++|.+++|+|++++|++++.|++|++||+.+++.
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence 4789999999999999999999999999987664 6677899999999999999999999999999999999987754
Q ss_pred -eeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeee
Q psy17863 90 -VRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 168 (341)
Q Consensus 90 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 168 (341)
...+.+|...|.+++|+|+++.|++++.|+.+++|+++....... ...
T Consensus 87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~-------------------------------~~~ 135 (371)
T d1k8kc_ 87 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV-------------------------------CKH 135 (371)
T ss_dssp EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE-------------------------------EEE
T ss_pred cccccccccccccccccccccccceeecccCcceeeeeeccccccc-------------------------------ccc
Confidence 344567889999999999999999999999999999876441110 011
Q ss_pred EeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccc-------------------------cCCCCeEEEEEccCCCE
Q psy17863 169 IHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED-------------------------YGQEPIVDACFTRDCQC 222 (341)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~-------------------------~~~~~i~~~~~~~~~~~ 222 (341)
....+...+.+++|+|+++++++++ ++.+++|+.... .+...+.+++|+|++++
T Consensus 136 ~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~ 215 (371)
T d1k8kc_ 136 IKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR 215 (371)
T ss_dssp ECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE
T ss_pred cccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccc
Confidence 1112345689999999999998775 699999997532 15567899999999999
Q ss_pred EEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE-----------
Q psy17863 223 ILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI----------- 291 (341)
Q Consensus 223 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------- 291 (341)
|++++.|+.|++||+.+++.+..+..|..++..+ +|+|++++|++|. |+.+++|..........+.
T Consensus 216 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~--~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (371)
T d1k8kc_ 216 VAWVSHDSTVCLADADKKMAVATLASETLPLLAV--TFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ 292 (371)
T ss_dssp EEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEE--EEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC-----
T ss_pred ccccccCCcceEEeeecccceeeeecccccceee--eecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCcccccc
Confidence 9999999999999999999999999999998887 7889998777665 7888887765432211110
Q ss_pred ----------------------------eeeeccceEEEEEcCCC----cEEEEeC-CCcEEEEEcccc
Q psy17863 292 ----------------------------HSVGKAVVNSLCSHPTR----KHIMSAC-GNNVKLWTAEED 327 (341)
Q Consensus 292 ----------------------------~~~~~~~v~~~~~~~~~----~~l~~~~-d~~i~vw~~~~~ 327 (341)
...|.+.|+++++.|.+ ..++|++ ||.|++|+++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~ 361 (371)
T d1k8kc_ 293 RGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361 (371)
T ss_dssp ---CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred ccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence 01267789999998765 3688999 999999999753
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-42 Score=283.12 Aligned_cols=314 Identities=19% Similarity=0.355 Sum_probs=250.0
Q ss_pred CceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEE
Q psy17863 2 EYTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVIL 81 (341)
Q Consensus 2 ~~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 81 (341)
++++.++|+||++.|.+ +++++|++||||+.||+|+|||+.+++++.++.+|...|.+++|+|+ +|++++.|+.+++
T Consensus 5 ~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~ 81 (342)
T d2ovrb2 5 ELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKV 81 (342)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEE
T ss_pred CCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccc
Confidence 56788999999999865 46678999999999999999999999999999999999999999864 9999999999999
Q ss_pred EECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCc-------CeEEeecCCCceEEEeeccCeE
Q psy17863 82 WEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH-------PIQCCLDSKDSQIFCGSSDGKI 154 (341)
Q Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~i 154 (341)
|+............+...+...... ...+..+..|+.+.+|+..+++.. ............++.++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 159 (342)
T d2ovrb2 82 WNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV 159 (342)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCE
T ss_pred cccccccceecccccceeEeeeecc--cccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeE
Confidence 9998887777777677777666655 446788889999999999876532 2223344556688999999999
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccCCCEEEEe
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTC 226 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~ 226 (341)
++||....+....+..+ . .....+.+++..+++++ ++.+++|++.... +...+.+++++ +++|+++
T Consensus 160 ~~~d~~~~~~~~~~~~~--~--~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~ 233 (342)
T d2ovrb2 160 KVWDPETETCLHTLQGH--T--NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSG 233 (342)
T ss_dssp EEEEGGGTEEEEEECCC--S--SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEE
T ss_pred EEeecccceeeEEEcCc--c--cccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEE
Confidence 99999887776665433 2 22334455677777665 6999999987654 56667766655 5689999
Q ss_pred ecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEe---eeeccceEEEE
Q psy17863 227 STDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIH---SVGKAVVNSLC 303 (341)
Q Consensus 227 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~ 303 (341)
+.|+.|++||....+....+..+......+. ++.++++++++|+.||.|++||+++++.+..+.. .+|...|++++
T Consensus 234 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~ 312 (342)
T d2ovrb2 234 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVT-CLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR 312 (342)
T ss_dssp ETTSCEEEEETTTCCEEEEECSTTSCSSCEE-EEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE
T ss_pred cCCCEEEEEecccccccccccccceeeecee-ecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEE
Confidence 9999999999998888777765443222211 3344567999999999999999999999888762 24677899999
Q ss_pred EcCCCcEEEEeC-CCc----EEEEEcccc
Q psy17863 304 SHPTRKHIMSAC-GNN----VKLWTAEED 327 (341)
Q Consensus 304 ~~~~~~~l~~~~-d~~----i~vw~~~~~ 327 (341)
|+|++.+|++|+ ||+ |++||++.+
T Consensus 313 ~s~~~~~la~g~~dGt~~~~l~~~Df~~~ 341 (342)
T d2ovrb2 313 ASNTKLVCAVGSRNGTEETKLLVLDFDVD 341 (342)
T ss_dssp ECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred ECCCCCEEEEEeCCCCCeeEEEEEeCCCC
Confidence 999999999999 885 999998754
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.9e-43 Score=288.65 Aligned_cols=306 Identities=16% Similarity=0.275 Sum_probs=242.1
Q ss_pred eeeEEeeeCCcE-EEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 5 CVQTIDCKQGAI-RAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 5 ~~~~l~~h~~~v-~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
...+|+||.+.| +|++| ++++||||+.||+|+|||+.+++++.++.+|.++|++++|+|+ .+|++++.|++|++|+
T Consensus 4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80 (355)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence 356899998875 66655 6889999999999999999999999999999999999999985 5899999999999999
Q ss_pred CCCCceeeeecc--cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcC----------------------------
Q psy17863 84 VTTGQPVRRWRE--HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP---------------------------- 133 (341)
Q Consensus 84 ~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---------------------------- 133 (341)
+...+....... +........+.+++..+++++.|+.|++||+++.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d1nexb2 81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 160 (355)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred ccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence 998887665544 33445666778899999999999999999987643100
Q ss_pred --eEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc----
Q psy17863 134 --IQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY---- 206 (341)
Q Consensus 134 --~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~---- 206 (341)
........+..++.+..|+.+++||+.+.+....... ....+.++.++|++..++++. ++.+++|+.....
T Consensus 161 ~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 238 (355)
T d1nexb2 161 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG--HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 238 (355)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC--CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred cccccccccccceeeeecccceeeeeecccccceeeeec--cccccccccccccceeeecccccceEEeeeccccccccc
Confidence 0111223356888999999999999998877655543 345588999999999888776 5899999987654
Q ss_pred ---CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeC
Q psy17863 207 ---GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 207 ---~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 283 (341)
|...|.++++++ ++|++++.||.|++||++++... +..|...+..+. +++++++++++| .||.|++||+++
T Consensus 239 ~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~-~~~~~~~~l~~g-~d~~i~vwd~~t 312 (355)
T d1nexb2 239 LQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAIT-TFYVSDNILVSG-SENQFNIYNLRS 312 (355)
T ss_dssp ECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCC-EEEECSSEEEEE-ETTEEEEEETTT
T ss_pred ccccccccccccccc--ceeeeeeccccccccccccccee--cccccCCceEEE-EEcCCCCEEEEE-eCCEEEEEECCC
Confidence 778899988864 68999999999999999877543 445555555543 456777776666 589999999999
Q ss_pred CCceEE-EEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEc
Q psy17863 284 SSQIST-LIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 284 ~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~ 324 (341)
++++.. +. +|..+|.+++|+|+ .++++++ ||+++||.+
T Consensus 313 g~~~~~~~~--~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 313 GKLVHANIL--KDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp CCBCCSCTT--TTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred CCEEEEEec--CCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 998754 44 68899999999987 5677777 999777654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.4e-41 Score=270.13 Aligned_cols=242 Identities=17% Similarity=0.217 Sum_probs=202.2
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCccee--eEecCcccceeEEEEecCCCEEEEecC--CCcE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLL--KTYGGHAHEVNDATAACDSSQIASGAS--DKSV 79 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i 79 (341)
+..+.+.+|.+.|++++|+|+|++||+|+.||+|++||+.+++.. ..+..|..+|.+++|+|++++|++++. +..+
T Consensus 49 ~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~ 128 (311)
T d1nr0a1 49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 128 (311)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccc
Confidence 456788999999999999999999999999999999999887644 557889999999999999999999876 4669
Q ss_pred EEEECCCCceeeeecccCccEEEEEEcCCCcE-EEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 80 ILWEVTTGQPVRRWREHASKVTCVKFNEDSSV-VISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
++|++++++....+.+|...|.+++|+|++++ |++|+.|+.|++||+++.+
T Consensus 129 ~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~---------------------------- 180 (311)
T d1nr0a1 129 HVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK---------------------------- 180 (311)
T ss_dssp EEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE----------------------------
T ss_pred cccccccccccccccccccccccccccccceeeecccccccccccccccccc----------------------------
Confidence 99999999999999999999999999998875 7889999999999887543
Q ss_pred ccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc--------------CCCCeEEEEEccCCCEE
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY--------------GQEPIVDACFTRDCQCI 223 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~--------------~~~~i~~~~~~~~~~~l 223 (341)
.... ...+...+.++.++|+++++++++ ++.+++|+..... |...|.+++|+|++++|
T Consensus 181 -----~~~~--~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l 253 (311)
T d1nr0a1 181 -----FKST--FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 253 (311)
T ss_dssp -----EEEE--ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEE
T ss_pred -----cccc--cccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEE
Confidence 1111 112345689999999999888776 5899999976532 56789999999999999
Q ss_pred EEeecCCeEEEEeccccceeeeecCccc-ceeEEEEEeCCCCCEEEEecCCCcEEEEeee
Q psy17863 224 LTCSTDECLRLFDKATGELLEEYKGHKS-GDFRIECCLDSKDSQIFCGSSDGKIYKWQLV 282 (341)
Q Consensus 224 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 282 (341)
++|+.||.|++||++++++++++..|.. ....+ .+.++++.|++++.||.|++||.+
T Consensus 254 ~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~--~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 254 ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL--GIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE--EEEECSSCEEEEETTCCEEEEETT
T ss_pred EEEeCCCeEEEEECCCCcEEEEEECCCCccceEE--EEEecCCEEEEEECCCEEEEEeCC
Confidence 9999999999999999999999887654 23334 333445679999999999999963
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.3e-39 Score=260.48 Aligned_cols=235 Identities=18% Similarity=0.292 Sum_probs=206.0
Q ss_pred EEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCC--cceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECC
Q psy17863 8 TIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR--NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVT 85 (341)
Q Consensus 8 ~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~ 85 (341)
...+|.+.|++++|+|++++|++|+.||.|++||+.. .+....+..|...+.+++|+|++.++++++.|+.|++|++.
T Consensus 92 ~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~ 171 (337)
T d1gxra_ 92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171 (337)
T ss_dssp ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3457999999999999999999999999999999864 45566778899999999999999999999999999999999
Q ss_pred CCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcce
Q psy17863 86 TGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
+++.......|...|.+++|++++..+++++.|+.+++||+++++ .+..+
T Consensus 172 ~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~----------------------~~~~~-------- 221 (337)
T d1gxra_ 172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR----------------------QLQQH-------- 221 (337)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE----------------------EEEEE--------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccce----------------------eeccc--------
Confidence 999999999999999999999999999999999999999987643 01111
Q ss_pred eeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEEEEecc
Q psy17863 166 STLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLFDKA 238 (341)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 238 (341)
.....+.+++++|+++.+++++ ++.+++|++.... +...|.+++|+|++++|++++.|+.|++||..
T Consensus 222 ------~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~ 295 (337)
T d1gxra_ 222 ------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp ------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ------ccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECC
Confidence 1345688999999999888765 5889999987654 78899999999999999999999999999999
Q ss_pred ccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEee
Q psy17863 239 TGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQL 281 (341)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (341)
+++.+..+. |...+..+ +|+|++++|++|+.||+|+|||+
T Consensus 296 ~~~~~~~~~-~~~~v~~~--~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 296 YGASIFQSK-ESSSVLSC--DISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TCCEEEEEE-CSSCEEEE--EECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCEEEEcc-CCCCEEEE--EEeCCCCEEEEEeCCCeEEEEEE
Confidence 999887766 66778776 89999999999999999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.5e-38 Score=262.66 Aligned_cols=237 Identities=16% Similarity=0.190 Sum_probs=200.5
Q ss_pred cccceeEEEEecCCCEEEEecCCCcEEEEECCCCc--eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCC
Q psy17863 54 HAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ--PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSH 131 (341)
Q Consensus 54 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 131 (341)
..++|+|++|+|++++|++|+.||.|++||+++++ .+..+++|.++|.+++|+|++++|++++.|+.|++||+++...
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence 34789999999999999999999999999998775 5677889999999999999999999999999999999875431
Q ss_pred cCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc----
Q psy17863 132 HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY---- 206 (341)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~---- 206 (341)
...+....+...+.+++|+|+++.+++++ ++.+++|+++...
T Consensus 86 ---------------------------------~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~ 132 (371)
T d1k8kc_ 86 ---------------------------------KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 132 (371)
T ss_dssp ---------------------------------EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEE
T ss_pred ---------------------------------ccccccccccccccccccccccccceeecccCcceeeeeeccccccc
Confidence 11111122445689999999999988876 4889999876532
Q ss_pred -------CCCCeEEEEEccCCCEEEEeecCCeEEEEecccc------------------ceeeeecCcccceeEEEEEeC
Q psy17863 207 -------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATG------------------ELLEEYKGHKSGDFRIECCLD 261 (341)
Q Consensus 207 -------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~ 261 (341)
+...|.+++|+|++++|++|+.|+.+++|+.... +.+....+|...+..+ +|+
T Consensus 133 ~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s 210 (371)
T d1k8kc_ 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV--CFS 210 (371)
T ss_dssp EEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE--EEC
T ss_pred ccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEE--Eee
Confidence 6778999999999999999999999999997542 2445566788878777 899
Q ss_pred CCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEEEcccc
Q psy17863 262 SKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEED 327 (341)
Q Consensus 262 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw~~~~~ 327 (341)
|++++|++++.|+.|++||+.+++.+..+. .|..+|.+++|+|++++|++|.|+.+++|..+..
T Consensus 211 ~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~ 274 (371)
T d1k8kc_ 211 ANGSRVAWVSHDSTVCLADADKKMAVATLA--SETLPLLAVTFITESSLVAAGHDCFPVLFTYDSA 274 (371)
T ss_dssp SSSSEEEEEETTTEEEEEEGGGTTEEEEEE--CSSCCEEEEEEEETTEEEEEETTSSCEEEEEETT
T ss_pred cccccccccccCCcceEEeeecccceeeee--cccccceeeeecCCCCEEEEEcCCceEEEEeeCC
Confidence 999999999999999999999999999988 7899999999999999999888888888776543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.2e-38 Score=253.97 Aligned_cols=250 Identities=12% Similarity=0.189 Sum_probs=206.6
Q ss_pred cceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeec-ccCccEEEEEEcCCCcEEEEecCCCeEEE
Q psy17863 45 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR-EHASKVTCVKFNEDSSVVISGSQDNTVMM 123 (341)
Q Consensus 45 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 123 (341)
|+..+.+.+|...|++++|+|++++|++|+.||+|++||+++++.++.+. .|...|++++|+|++++ ++++.|+.+++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~ 80 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKV 80 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEE
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEE
Confidence 56778899999999999999999999999999999999999999888874 68999999999999875 55667899999
Q ss_pred EEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcc
Q psy17863 124 WDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAE 203 (341)
Q Consensus 124 wd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 203 (341)
|+......... . .........+..++++|+++.++++.++.+.+|+..
T Consensus 81 ~~~~~~~~~~~-------------------------------~-~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~ 128 (299)
T d1nr0a2 81 VPAGGSGVDSS-------------------------------K-AVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 128 (299)
T ss_dssp ECSSSSSSCTT-------------------------------S-CCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT
T ss_pred eccCCcccccc-------------------------------c-cccccccccccccccccccccccccccccccccccc
Confidence 99765431100 0 001113345788999999999999999999999865
Q ss_pred ccc---CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceee-eecCcccceeEEEEEeCCCCCEEEEecCCCcEEEE
Q psy17863 204 EDY---GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLE-EYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKW 279 (341)
Q Consensus 204 ~~~---~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 279 (341)
... ....+.+++|+|+++++++++.|+.|++||+++++... ....|...+..+ +++|++++|++++.|+.|++|
T Consensus 129 ~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~l~~~~~d~~i~~~ 206 (299)
T d1nr0a2 129 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSV--AFSNNGAFLVATDQSRKVIPY 206 (299)
T ss_dssp EEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEE--EECTTSSEEEEEETTSCEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccc
Confidence 432 56678999999999999999999999999998776543 345678888877 899999999999999999999
Q ss_pred eeeCCCceEEEE-eeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccC
Q psy17863 280 QLVDSSQISTLI-HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 280 d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~ 329 (341)
|+.++....... ...|..+|++++|+|++++|++++ |+.|++|++++...
T Consensus 207 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~ 258 (299)
T d1nr0a2 207 SVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 258 (299)
T ss_dssp EGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred cccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCc
Confidence 998876654332 226889999999999999999999 99999999987543
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.6e-38 Score=254.34 Aligned_cols=275 Identities=13% Similarity=0.148 Sum_probs=210.1
Q ss_pred CcEEEEEEccCCCEEEEEeCCC-eEEEEcCCCc--ceeeEecCcc-cceeEEEEec--CCCEEEEecCCCcEEEEECCCC
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDK-KIKLWNPYRN--LLLKTYGGHA-HEVNDATAAC--DSSQIASGASDKSVILWEVTTG 87 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg-~i~iw~~~~~--~~~~~~~~~~-~~v~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~ 87 (341)
+.+++++|+|+++.|+.++.+. .|+.|+.... .....+.+|. ..|++++|+| ++.+|++|+.||+|++||+..+
T Consensus 18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~ 97 (325)
T d1pgua1 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97 (325)
T ss_dssp TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence 3568999999999999887554 3667775443 4456677774 6799999998 5689999999999999999765
Q ss_pred ceee--------eecccCccEEEEEEcCCCcEEEEecC--CCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 88 QPVR--------RWREHASKVTCVKFNEDSSVVISGSQ--DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 88 ~~~~--------~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
+... .+..|.++|.+++|+++++++++++. ++.+.+|+.+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~---------------------------- 149 (325)
T d1pgua1 98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG---------------------------- 149 (325)
T ss_dssp GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC----------------------------
T ss_pred cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccc----------------------------
Confidence 4332 34457889999999999999887764 455666665443
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceE-EEe-CCCceEEEEccccc----------CCCCeEEEEEccC-CCEEE
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHI-MSA-CGNNVKLWTAEEDY----------GQEPIVDACFTRD-CQCIL 224 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~i~~~~~~~~~----------~~~~i~~~~~~~~-~~~l~ 224 (341)
+.+..+. .+...+.+++|+|++..+ +++ .++.+++|+..... +...|.+++|+|+ +.+++
T Consensus 150 -----~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~ 222 (325)
T d1pgua1 150 -----NSLGEVS--GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI 222 (325)
T ss_dssp -----CEEEECC--SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEE
T ss_pred -----ccceeee--ecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecc
Confidence 3333322 245669999999998763 333 47999999976422 5677999999996 68899
Q ss_pred EeecCCeEEEEeccccceeeeecCcccceeEEEEEe-CCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEE-
Q psy17863 225 TCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCL-DSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL- 302 (341)
Q Consensus 225 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~- 302 (341)
+++.|+.|++||+++++.+..+.+|..++..+.++. .+++++|++++.|+.|+|||+++++++..+....+...+..+
T Consensus 223 s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 302 (325)
T d1pgua1 223 TVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 302 (325)
T ss_dssp EEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEE
T ss_pred ccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEE
Confidence 999999999999999999999999988876553332 278899999999999999999999999888733343344444
Q ss_pred -EEcCCCcEEEEeC-CCcEEEEEc
Q psy17863 303 -CSHPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 303 -~~~~~~~~l~~~~-d~~i~vw~~ 324 (341)
.+.++ .+|++++ ||.|++||+
T Consensus 303 ~~~~~~-~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 303 VVATGN-GRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEET-TEEEEEETTSCEEEEET
T ss_pred EEECCC-CEEEEEECCCEEEEEEC
Confidence 44444 4678888 999999996
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-37 Score=245.33 Aligned_cols=269 Identities=23% Similarity=0.388 Sum_probs=211.5
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
.+.++.+..|...|+|++| |+++||||+.||+|+|||+.+++++.++++|...|++++| ++++|++|+.|+.|++|
T Consensus 5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 80 (293)
T ss_dssp CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccc
Confidence 3455666778889998765 7899999999999999999999999999999999999887 67899999999999999
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeE----------EeecCCCceEEEeeccC
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ----------CCLDSKDSQIFCGSSDG 152 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~g 152 (341)
++..+........+..... .+.+....++++..++.+.+|+.......... .........+++++.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~ 158 (293)
T d1p22a2 81 DVNTGEMLNTLIHHCEAVL--HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDR 158 (293)
T ss_dssp ESSSCCEEEEECCCCSCEE--EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTS
T ss_pred ccccccccccccccccccc--cccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCC
Confidence 9999888777665544433 34455668899999999999998875532211 12222344677888889
Q ss_pred eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeE
Q psy17863 153 KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECL 232 (341)
Q Consensus 153 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i 232 (341)
.+++||.++.+.+..+... ...+..+.+ ++..+++++.|+.|
T Consensus 159 ~i~~~d~~~~~~~~~~~~~------------------------------------~~~v~~~~~--~~~~l~~~~~dg~i 200 (293)
T d1p22a2 159 TIKVWNTSTCEFVRTLNGH------------------------------------KRGIACLQY--RDRLVVSGSSDNTI 200 (293)
T ss_dssp EEEEEETTTCCEEEEEECC------------------------------------SSCEEEEEE--ETTEEEEEETTSCE
T ss_pred ceeeecCCCCcEEEEEccc------------------------------------ccccccccC--CCCeEEEecCCCEE
Confidence 9999998887665544322 223444433 45679999999999
Q ss_pred EEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCC---------CceEEEEeeeeccceEEEE
Q psy17863 233 RLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDS---------SQISTLIHSVGKAVVNSLC 303 (341)
Q Consensus 233 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~~v~~~~ 303 (341)
++||+++.+.+..+.++...+. .+++++.+|++|+.||.|++||+... .++..+. +|.+.|++++
T Consensus 201 ~i~d~~~~~~~~~~~~~~~~v~----~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~H~~~V~~v~ 274 (293)
T d1p22a2 201 RLWDIECGACLRVLEGHEELVR----CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV--EHSGRVFRLQ 274 (293)
T ss_dssp EEEETTTCCEEEEECCCSSCEE----EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC--CCSSCCCCEE
T ss_pred EEEecccceeeeeecccceeee----eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEec--CCCCCEEEEE
Confidence 9999999999999998887664 35567889999999999999997542 3455666 8999999999
Q ss_pred EcCCCcEEEEeC-CCcEEEEE
Q psy17863 304 SHPTRKHIMSAC-GNNVKLWT 323 (341)
Q Consensus 304 ~~~~~~~l~~~~-d~~i~vw~ 323 (341)
|+ +.+|++++ ||+|++||
T Consensus 275 ~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 275 FD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EC--SSCEEECCSSSEEEEEC
T ss_pred Ec--CCEEEEEecCCEEEEeC
Confidence 85 56899999 99999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.2e-38 Score=255.64 Aligned_cols=295 Identities=13% Similarity=0.076 Sum_probs=219.3
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeE---ecCcccceeEEEEecCC-CEEEEecCCCcE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKT---YGGHAHEVNDATAACDS-SQIASGASDKSV 79 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~---~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i 79 (341)
|.++.+++|++.|++|+|+|++++||+|+.||+|+|||+.++..... ..+|..+|.+++|+|++ .+|++|+.||.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 67888999999999999999999999999999999999876543322 33699999999999864 579999999999
Q ss_pred EEEECCCCceeeeecccCc-cEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcC---------------eEEeecCCCc
Q psy17863 80 ILWEVTTGQPVRRWREHAS-KVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP---------------IQCCLDSKDS 143 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---------------~~~~~~~~~~ 143 (341)
++|++..+........+.. ......+.++...+++++.++.+++||++...... ..........
T Consensus 82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence 9999998877666654443 34455566688899999999999999987543211 1123344566
Q ss_pred eEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEE-EccCCCE
Q psy17863 144 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDAC-FTRDCQC 222 (341)
Q Consensus 144 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~-~~~~~~~ 222 (341)
.+++++.|+.+++|++............... .....+.. +.+++..
T Consensus 162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~ 208 (342)
T d1yfqa_ 162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGL---------------------------------KYQIRDVALLPKEQEG 208 (342)
T ss_dssp EEEEEESTTEEEEEESSCCTTCCCEEEECSC---------------------------------SSCEEEEEECSGGGCE
T ss_pred ceeeecCCCcEEEEecccCcccceeeeeccc---------------------------------ccceeeeEeecCCCCE
Confidence 8889999999999999876655444322111 12233333 3446677
Q ss_pred EEEeecCCeEEEEecccccee---------------eeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCce
Q psy17863 223 ILTCSTDECLRLFDKATGELL---------------EEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 287 (341)
Q Consensus 223 l~~~~~d~~i~i~d~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 287 (341)
+++++.||.+.+|+....... .....|...+.++ +|+|++++|++|+.||.|++||+++++++
T Consensus 209 ~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l--~~sp~~~~lasg~~Dg~v~vWD~~~~~~l 286 (342)
T d1yfqa_ 209 YACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI--EFSPRHKFLYTAGSDGIISCWNLQTRKKI 286 (342)
T ss_dssp EEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEE--EECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred EEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeE--EecCCccEEEEECCCCEEEEEECCCCcEE
Confidence 888999999999987543211 1123455556666 89999999999999999999999999888
Q ss_pred EEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCccceee
Q psy17863 288 STLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQAGLSSL 336 (341)
Q Consensus 288 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~~~~~~ 336 (341)
..+. +...+..++|+|++++|++++ |+.+++|..............
T Consensus 287 ~~~~---~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~~~~~~~~~~i 333 (342)
T d1yfqa_ 287 KNFA---KFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSI 333 (342)
T ss_dssp EECC---CCSSSEEEEEEECSSEEEEEEECTHHHHCSSSCTTSCCCCCEE
T ss_pred EEec---CCCCCEEEEEEeCCCEEEEEEcCCcEEEeeeeCCCccCCCCeE
Confidence 8775 234556678889999999998 999999987655444433333
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.1e-37 Score=247.73 Aligned_cols=254 Identities=21% Similarity=0.314 Sum_probs=215.3
Q ss_pred EEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCC
Q psy17863 39 LWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD 118 (341)
Q Consensus 39 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 118 (341)
.|.+. .....++++|.++|++++|+|++++|++|+.||+|++||+++++.+..+++|...|.+++|+|++.+++++..+
T Consensus 2 ~w~p~-~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~ 80 (317)
T d1vyhc1 2 EWIPR-PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD 80 (317)
T ss_dssp CCCCC-SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ccCCC-CCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccc
Confidence 46543 34456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCC---------cCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceE
Q psy17863 119 NTVMMWDVKSRSH---------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHI 189 (341)
Q Consensus 119 ~~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (341)
+.+..|+...... ........+.+..+++++.|+.+++||+++++....+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~------------------- 141 (317)
T d1vyhc1 81 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG------------------- 141 (317)
T ss_dssp SCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-------------------
T ss_pred cccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEcc-------------------
Confidence 9999999776431 222334445566888888899999999887765554432
Q ss_pred EEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCC------
Q psy17863 190 MSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSK------ 263 (341)
Q Consensus 190 ~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 263 (341)
+...+.+++++|++++|++++.|+.|++|+..+++....+.+|...+..+ .++|+
T Consensus 142 -----------------~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~ 202 (317)
T d1vyhc1 142 -----------------HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI--SWAPESSYSSI 202 (317)
T ss_dssp -----------------CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE--EECCSCGGGGG
T ss_pred -----------------CCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEE--EEeecccccee
Confidence 24567888899999999999999999999999999999999888888777 44443
Q ss_pred --------------CCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 264 --------------DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 264 --------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
+.++++++.|+.|++||+.+++++..+. .|...|.+++|+|++++|++++ ||.|++||+.++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 280 (317)
T d1vyhc1 203 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV--GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 280 (317)
T ss_dssp GGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred eccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEe--CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc
Confidence 4578999999999999999999999988 8999999999999999999999 9999999998876
Q ss_pred CCccc
Q psy17863 329 GQAGL 333 (341)
Q Consensus 329 ~~~~~ 333 (341)
....+
T Consensus 281 ~~~~~ 285 (317)
T d1vyhc1 281 CMKTL 285 (317)
T ss_dssp CCEEE
T ss_pred EEEEE
Confidence 54443
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.2e-37 Score=254.83 Aligned_cols=246 Identities=22% Similarity=0.338 Sum_probs=195.4
Q ss_pred EeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCc
Q psy17863 9 IDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 88 (341)
Q Consensus 9 l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 88 (341)
..+|...|++++|+|++++|++|+.||.|++||...++.+..+.+|...|.++.+++++..+++++.++.+++||..+..
T Consensus 117 ~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 196 (388)
T d1erja_ 117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 196 (388)
T ss_dssp --CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred ccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccc
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred eeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeee
Q psy17863 89 PVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 168 (341)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 168 (341)
.......+...+....+.+++++|++++.|+.|++|+.+++.... ..+.. ..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~----------------------~~~~~------~~ 248 (388)
T d1erja_ 197 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE----------------------RLDSE------NE 248 (388)
T ss_dssp EEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEE----------------------EEC----------
T ss_pred cccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccce----------------------eeccc------cc
Confidence 877776555555444444588999999999999999998754100 00000 00
Q ss_pred EeeecCceEEEEEECCCCceEEEeC-CCceEEEEcccc-------------------cCCCCeEEEEEccCCCEEEEeec
Q psy17863 169 IHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEED-------------------YGQEPIVDACFTRDCQCILTCST 228 (341)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~-------------------~~~~~i~~~~~~~~~~~l~~~~~ 228 (341)
....+...|.+++++|+++++++++ ++.+++|++... .+...|.+++|+|++++|++|+.
T Consensus 249 ~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~ 328 (388)
T d1erja_ 249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 328 (388)
T ss_dssp --CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET
T ss_pred cccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC
Confidence 0111234456666666666555544 356666665432 15678999999999999999999
Q ss_pred CCeEEEEeccccceeeeecCcccceeEEEE----EeCCCCCEEEEecCCCcEEEEeee
Q psy17863 229 DECLRLFDKATGELLEEYKGHKSGDFRIEC----CLDSKDSQIFCGSSDGKIYKWQLV 282 (341)
Q Consensus 229 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~dg~i~iwd~~ 282 (341)
||.|++||+++++++.++++|...|..+.+ .++|++++|++|+.||+|+||+++
T Consensus 329 dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 329 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 999999999999999999999999988854 367899999999999999999985
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-37 Score=247.15 Aligned_cols=264 Identities=15% Similarity=0.158 Sum_probs=195.5
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
.+++++|++|.++|++++|+| |+||+.||+|++||+.++. ..|...|.++.+++++ .+++++.|+++++|
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w 72 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN 72 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCC-eEEEEeeccccccc
Confidence 478999999999999999987 9999999999999987643 5799999999998654 67899999999999
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcC------eEEeecCCCceEEEeecc-CeEE
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHP------IQCCLDSKDSQIFCGSSD-GKIY 155 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~-g~i~ 155 (341)
++...+ ....+..+.+++++..++++. ++.+.+|+..+++... ........+..+++++.+ +.++
T Consensus 73 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~ 144 (287)
T d1pgua2 73 GITKHE-------FGSQPKVASANNDGFTAVLTN-DDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQ 144 (287)
T ss_dssp TEEEEE-------CSSCEEEEEECSSSEEEEEET-TSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEE
T ss_pred cccccc-------cccceeeeeeccCCceEEEee-cccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceee
Confidence 975422 344567888888887777655 5567788776654110 011111222333333333 2345
Q ss_pred EEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEE
Q psy17863 156 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLF 235 (341)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 235 (341)
+|++...+..... ...+..++++++|+|++.+|++|+.||.|++|
T Consensus 145 ~~~~~~~~~~~~~-----------------------------------~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~ 189 (287)
T d1pgua2 145 VFKLSDLEVSFDL-----------------------------------KTPLRAKPSYISISPSETYIAAGDVMGKILLY 189 (287)
T ss_dssp EEETTEEEEEEEC-----------------------------------SSCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeeccccceeeee-----------------------------------eeccCCceeEEEeccCccccccccccccccce
Confidence 5544322111111 01145679999999999999999999999999
Q ss_pred eccccceee-eecCcccceeEEEEEeCC----------CCCEEEEecCCCcEEEEeeeCC-CceEEEEeeeeccceEEEE
Q psy17863 236 DKATGELLE-EYKGHKSGDFRIECCLDS----------KDSQIFCGSSDGKIYKWQLVDS-SQISTLIHSVGKAVVNSLC 303 (341)
Q Consensus 236 d~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~ 303 (341)
|+.+++... .+.+|...+..+ +|+| ++.++++|+.|++|++||++++ +.+..+. +|...|++++
T Consensus 190 d~~~~~~~~~~~~~h~~~v~~~--~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~--~h~~~V~~v~ 265 (287)
T d1pgua2 190 DLQSREVKTSRWAFRTSKINAI--SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLL 265 (287)
T ss_dssp ETTTTEEEECCSCCCSSCEEEE--EECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--SSTTCEEEEE
T ss_pred eeccccccccccccccccccee--eecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeC--CCCCCeEEEE
Confidence 999887654 567899988888 5554 4578999999999999999774 4455555 7999999999
Q ss_pred EcCCCcEEEEeC-CCcEEEEEc
Q psy17863 304 SHPTRKHIMSAC-GNNVKLWTA 324 (341)
Q Consensus 304 ~~~~~~~l~~~~-d~~i~vw~~ 324 (341)
|+|++. |++++ |+.|++|++
T Consensus 266 ~~~~~~-l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 266 WETPST-LVSSGADACIKRWNV 286 (287)
T ss_dssp EEETTE-EEEEETTSCEEEEEE
T ss_pred ECCCCE-EEEEECCCeEEEEEE
Confidence 999875 66777 999999996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.2e-36 Score=244.03 Aligned_cols=254 Identities=17% Similarity=0.236 Sum_probs=204.6
Q ss_pred cceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEE
Q psy17863 45 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 124 (341)
Q Consensus 45 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 124 (341)
.+..+++++|.++|++++|+|++++|++|+.||+|++||+.+++.+..+..|..+|.+++|+|+++++++++.|+.+.+|
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccc
Q psy17863 125 DVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEE 204 (341)
Q Consensus 125 d~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (341)
+.............. ..+..........+.........+.....+....
T Consensus 125 ~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (340)
T d1tbga_ 125 NLKTREGNVRVSREL-------------------------------AGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIET 173 (340)
T ss_dssp ESSSSCSCCCEEEEE-------------------------------CCCSSCEEEEEEEETTEEEEEETTTEEEEEETTT
T ss_pred cccccccccccceec-------------------------------cccccccccccccccccccccccccccccccccc
Confidence 987654221111000 0011112222222233333333344444444332
Q ss_pred c-------cCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEE
Q psy17863 205 D-------YGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIY 277 (341)
Q Consensus 205 ~-------~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 277 (341)
. .....+....+.+.+.++++++.|+.|++||+++++++..+.+|...+.++ +++|++++|++|+.||.|+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v--~~~p~~~~l~s~s~d~~i~ 251 (340)
T d1tbga_ 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI--CFFPNGNAFATGSDDATCR 251 (340)
T ss_dssp TEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEE--EECTTSSEEEEEETTSCEE
T ss_pred ccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEE--EECCCCCEEEEEeCCCeEE
Confidence 2 256778889999999999999999999999999999999999999999888 8899999999999999999
Q ss_pred EEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCc
Q psy17863 278 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 278 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~ 331 (341)
+|++...+.+..+....+...|.+++|+|++++|++++ ||.|++||+.++....
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~ 306 (340)
T d1tbga_ 252 LFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306 (340)
T ss_dssp EEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEE
T ss_pred EEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEE
Confidence 99999888887776556778899999999999999999 9999999998765443
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.5e-36 Score=246.21 Aligned_cols=272 Identities=18% Similarity=0.294 Sum_probs=208.4
Q ss_pred eeEecCcccce-eEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEe
Q psy17863 48 LKTYGGHAHEV-NDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126 (341)
Q Consensus 48 ~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 126 (341)
..++++|...| +|++| ++++|++|+.||+|++||+.+++++.++++|.++|++++|+|+ .+|++++.|+.|++|++
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI 81 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred cEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccc
Confidence 45689998876 55554 6889999999999999999999999999999999999999985 58999999999999998
Q ss_pred cCCCCc-----------CeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeec-------------------Cce
Q psy17863 127 KSRSHH-----------PIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG-------------------KAV 176 (341)
Q Consensus 127 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~-------------------~~~ 176 (341)
...... ............+++++.|+.+++||+.+............ ...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (355)
T d1nexb2 82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 161 (355)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred cccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecc
Confidence 775411 11223344556789999999999999987654433211100 000
Q ss_pred EEEEEECCCCceEEEeC-CCceEEEEccccc-------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecC
Q psy17863 177 VNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKG 248 (341)
Q Consensus 177 ~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 248 (341)
.......++++.++.+. ++.+++|+..... +...+.++.++|++..+++++.|+.|++||.+++..+..+.+
T Consensus 162 ~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 241 (355)
T d1nexb2 162 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 241 (355)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred ccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccc
Confidence 11233445666666655 5899999987643 667889999999999999999999999999999999999999
Q ss_pred cccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEE-EEcCCCcEEEEeCCCcEEEEEcccc
Q psy17863 249 HKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL-CSHPTRKHIMSACGNNVKLWTAEED 327 (341)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~d~~i~vw~~~~~ 327 (341)
|...+..+ +++ +++|++|+.||.|++||+.++..... .|...+.++ .+++++++|++++|+.|++||++++
T Consensus 242 h~~~v~~~--~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg 313 (355)
T d1nexb2 242 HTALVGLL--RLS--DKFLVSAAADGSIRGWDANDYSRKFS----YHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSG 313 (355)
T ss_dssp CSSCCCEE--EEC--SSEEEEECTTSEEEEEETTTCCEEEE----EECTTCCCCCEEEECSSEEEEEETTEEEEEETTTC
T ss_pred cccccccc--ccc--cceeeeeecccccccccccccceecc----cccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCC
Confidence 99999877 555 56999999999999999987765433 344555544 5678888887777999999999876
Q ss_pred cCC
Q psy17863 328 YGQ 330 (341)
Q Consensus 328 ~~~ 330 (341)
...
T Consensus 314 ~~~ 316 (355)
T d1nexb2 314 KLV 316 (355)
T ss_dssp CBC
T ss_pred CEE
Confidence 543
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.5e-35 Score=246.38 Aligned_cols=274 Identities=13% Similarity=0.198 Sum_probs=200.7
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcce------eeEecCcccceeEEEE---ec----CCCEEE
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLL------LKTYGGHAHEVNDATA---AC----DSSQIA 71 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~------~~~~~~~~~~v~~~~~---~~----~~~~l~ 71 (341)
.....++|.+.|.++++++ ++++|++.|++|+|||..+.+. ......|...+..+.. .+ +..+++
T Consensus 6 ~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (393)
T d1sq9a_ 6 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 83 (393)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred eeecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence 3456789999999999864 6899999999999999765431 2222234443333222 11 234678
Q ss_pred EecCCCcEEEEECCCCceeeee----------cccCccEEEEEEcCC-----CcEEEEecCCCeEEEEEecCCC------
Q psy17863 72 SGASDKSVILWEVTTGQPVRRW----------REHASKVTCVKFNED-----SSVVISGSQDNTVMMWDVKSRS------ 130 (341)
Q Consensus 72 ~~~~dg~i~iw~~~~~~~~~~~----------~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~------ 130 (341)
+++.||.|++|++........+ ..+...+..++|.++ +.++++++.||.+++|++....
T Consensus 84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~ 163 (393)
T d1sq9a_ 84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 163 (393)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence 9999999999998654332211 224556778888764 4689999999999999986422
Q ss_pred --------------------CcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEE
Q psy17863 131 --------------------HHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 190 (341)
Q Consensus 131 --------------------~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (341)
...+.++...+++.+++|+.||.|++||+.+.+.+..+.....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~----------------- 226 (393)
T d1sq9a_ 164 TLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHS----------------- 226 (393)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC------------------
T ss_pred eeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccc-----------------
Confidence 0123344556667888999999999999888766554432110
Q ss_pred EeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCC---eEEEEeccccceeeeec-------------Cccccee
Q psy17863 191 SACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDE---CLRLFDKATGELLEEYK-------------GHKSGDF 254 (341)
Q Consensus 191 ~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~-------------~~~~~~~ 254 (341)
...|..+|.+++|+|+|++|++|+.|+ .|++||+++++.+..+. +|...|+
T Consensus 227 -------------l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~ 293 (393)
T d1sq9a_ 227 -------------MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 293 (393)
T ss_dssp ---------------CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEE
T ss_pred -------------cccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCcee
Confidence 012567899999999999999999886 49999999888776663 7999998
Q ss_pred EEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceE----EEEEcCCCcEEEEe
Q psy17863 255 RIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN----SLCSHPTRKHIMSA 314 (341)
Q Consensus 255 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~l~~~ 314 (341)
.+ +|+|++++|++|+.|++|++||+.+++++.++. +|...|. .++|+|++..++++
T Consensus 294 ~l--~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~--gH~~~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 294 SL--SFNDSGETLCSAGWDGKLRFWDVKTKERITTLN--MHCDDIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp EE--EECSSSSEEEEEETTSEEEEEETTTTEEEEEEE--CCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred ee--ccCCCCCeeEEECCCCEEEEEECCCCCEEEEEC--CcCCcccCCccEEEECCCCCEEEEc
Confidence 88 899999999999999999999999999999998 7876664 35667766655444
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-35 Score=239.11 Aligned_cols=280 Identities=21% Similarity=0.373 Sum_probs=220.0
Q ss_pred EcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCC
Q psy17863 40 WNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN 119 (341)
Q Consensus 40 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 119 (341)
|+..+.++...+++|.+.|.+ +++++|++|++|+.||+|++||+.++++++++.+|...|.+++|+|+ +|++++.|+
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~ 77 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDR 77 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTS
T ss_pred CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecc
Confidence 666677788899999999865 46678999999999999999999999999999999999999999875 899999999
Q ss_pred eEEEEEecCCCC-------cCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEe
Q psy17863 120 TVMMWDVKSRSH-------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA 192 (341)
Q Consensus 120 ~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (341)
.+++|+...... .............+..+..++.+.+|+..+.+....+..... ............+..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 154 (342)
T d2ovrb2 78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA---AVRCVQYDGRRVVSGA 154 (342)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSS---CEEEEEECSSCEEEEE
T ss_pred cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccc---cceeeccccceeeeec
Confidence 999999876432 112223334455778899999999999998877665543322 2233334445556666
Q ss_pred CCCceEEEEccccc-----CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEE
Q psy17863 193 CGNNVKLWTAEEDY-----GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQI 267 (341)
Q Consensus 193 ~~~~i~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 267 (341)
.++.+++|+..... .........+++++.++++++.||.|++||++.++.+..+.+|...+..+ ++ ++++|
T Consensus 155 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~--~~--~~~~l 230 (342)
T d2ovrb2 155 YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM--EL--KDNIL 230 (342)
T ss_dssp TTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEE--EE--ETTEE
T ss_pred CCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEE--ec--CCCEE
Confidence 67999999987644 22344555667789999999999999999999999999999999877655 44 45699
Q ss_pred EEecCCCcEEEEeeeCCCceEEEE-eeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCc
Q psy17863 268 FCGSSDGKIYKWQLVDSSQISTLI-HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 268 ~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~ 331 (341)
++|+.||.|++||+...+....+. ...|...+.++.++ +.++++++ ||.|++||++++...+
T Consensus 231 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~ 294 (342)
T d2ovrb2 231 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIR 294 (342)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEE
Confidence 999999999999999888877776 22355667776665 56899999 9999999998765433
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.2e-35 Score=236.32 Aligned_cols=241 Identities=15% Similarity=0.216 Sum_probs=184.8
Q ss_pred eeeeEEeeeC-CcEEEEEEcc--CCCEEEEEeCCCeEEEEcCCCcceee--------EecCcccceeEEEEecCCCEEEE
Q psy17863 4 TCVQTIDCKQ-GAIRAVRFNV--DGSYCLTCGSDKKIKLWNPYRNLLLK--------TYGGHAHEVNDATAACDSSQIAS 72 (341)
Q Consensus 4 ~~~~~l~~h~-~~v~~~~~~~--~~~~l~t~~~dg~i~iw~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~ 72 (341)
.....+.+|. ..|++++|+| ++++|++|+.||+|+|||+..++... .+..|.++|.+++|+++++++++
T Consensus 53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 132 (325)
T d1pgua1 53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132 (325)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccce
Confidence 3456777774 6899999998 57899999999999999987654332 34568889999999999999887
Q ss_pred ecC--CCcEEEEECCCCceeeeecccCccEEEEEEcCCCcE-EEEecCCCeEEEEEecCCC-----------CcCeEEee
Q psy17863 73 GAS--DKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSV-VISGSQDNTVMMWDVKSRS-----------HHPIQCCL 138 (341)
Q Consensus 73 ~~~--dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~-----------~~~~~~~~ 138 (341)
++. ++.+++|+.++++.+..+.+|...|.+++|+|++++ +++++.|+.+++||+...+ ...+.++.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~ 212 (325)
T d1pgua1 133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE 212 (325)
T ss_dssp EECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred eeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEee
Confidence 754 678999999999999999999999999999998764 7789999999999976532 22344444
Q ss_pred cCC--CceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEE
Q psy17863 139 DSK--DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACF 216 (341)
Q Consensus 139 ~~~--~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 216 (341)
+.+ +..+++++.|+.|++||+++++.+..+..+ ..++..+.|
T Consensus 213 ~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~------------------------------------~~~v~~~~~ 256 (325)
T d1pgua1 213 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD------------------------------------QEPVQGGIF 256 (325)
T ss_dssp ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT------------------------------------TBCCCSCEE
T ss_pred eccccceeccccccccceeeeeecccccccccccc------------------------------------cccccccee
Confidence 443 346777788888888887776655544321 222322233
Q ss_pred c---cCCCEEEEeecCCeEEEEeccccceeeeecCcccc--eeEEEEEeCCCCCEEEEecCCCcEEEEee
Q psy17863 217 T---RDCQCILTCSTDECLRLFDKATGELLEEYKGHKSG--DFRIECCLDSKDSQIFCGSSDGKIYKWQL 281 (341)
Q Consensus 217 ~---~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (341)
+ |++++|++++.|+.|++||+++++++..+..|... +..+.+.+.++ .+|++++.||.|++||+
T Consensus 257 s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred eeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence 3 67889999999999999999999999888766554 33444454444 47899999999999995
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=9e-34 Score=232.67 Aligned_cols=303 Identities=10% Similarity=0.031 Sum_probs=215.0
Q ss_pred EEEEcc-CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCC--cEEEEECCCCceeeeec
Q psy17863 18 AVRFNV-DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDK--SVILWEVTTGQPVRRWR 94 (341)
Q Consensus 18 ~~~~~~-~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~ 94 (341)
.-.||| ||+++|+++ +|.|++||..++...+ + .|...|.+++|+|||++|++++.+. .|++||.++++.. .+.
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~ 82 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFE 82 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECC
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-Eee
Confidence 456999 999999987 6899999998877654 3 5899999999999999998776553 7999999877654 566
Q ss_pred ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCc--------CeEEee-cCCCceEEEe----------eccCeEE
Q psy17863 95 EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH--------PIQCCL-DSKDSQIFCG----------SSDGKIY 155 (341)
Q Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--------~~~~~~-~~~~~~~~~~----------~~~g~i~ 155 (341)
.|...+.+++|+|++++|++++.++.+.+|++.+.+.. ....+. .+++..++.+ ..++.++
T Consensus 83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~ 162 (360)
T d1k32a3 83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH 162 (360)
T ss_dssp CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccccee
Confidence 79999999999999999999999999999999876531 222233 3344455533 3456799
Q ss_pred EEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc--------------CCCCeEEEEEccCC
Q psy17863 156 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY--------------GQEPIVDACFTRDC 220 (341)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~--------------~~~~i~~~~~~~~~ 220 (341)
+|+..+++...... +...+..++++|+++.++.++ ++.+.+|+..... +......+.+++++
T Consensus 163 v~d~~~~~~~~~~~---~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 239 (360)
T d1k32a3 163 VYDMEGRKIFAATT---ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS 239 (360)
T ss_dssp EEETTTTEEEECSC---SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGG
T ss_pred eeccccCceeeecc---cccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCc
Confidence 99998876544332 345578899999999988776 4778888865422 12222333455566
Q ss_pred CEEEEeecCC-----eEEEEeccccceeeeecCcccceeEEEE-EeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeee
Q psy17863 221 QCILTCSTDE-----CLRLFDKATGELLEEYKGHKSGDFRIEC-CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV 294 (341)
Q Consensus 221 ~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 294 (341)
..++++..+. .+..++...+.. ..+..+...+..+.. ..++.+.++++++.++.+++||+.+++.. .
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~------~ 312 (360)
T d1k32a3 240 MTSEAGEYDLNDMYKRSSPINVDPGDY-RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT------E 312 (360)
T ss_dssp GSCCCCCCCCTTGGGGCEECSCCCBCE-EEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE------E
T ss_pred CcccccceeecccccceeecccCcCce-eEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE------E
Confidence 5555443322 244444444433 233334443333311 22333446788899999999998876542 3
Q ss_pred eccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCccce
Q psy17863 295 GKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQAGLS 334 (341)
Q Consensus 295 ~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~~~~ 334 (341)
+.+.|.+++|+|||++|++++ ||.|++|+++++.....+.
T Consensus 313 ~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~~ 353 (360)
T d1k32a3 313 VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353 (360)
T ss_dssp EEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEECC
T ss_pred ecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEEE
Confidence 445689999999999999999 9999999999887766553
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.2e-31 Score=220.12 Aligned_cols=255 Identities=12% Similarity=0.113 Sum_probs=179.6
Q ss_pred eEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCcee------eeecccCccEEEEEE------cC-CCcEEEEe
Q psy17863 49 KTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV------RRWREHASKVTCVKF------NE-DSSVVISG 115 (341)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~~~~~v~~~~~------~~-~~~~l~~~ 115 (341)
...++|...|.+++++ ++++++++.|++|++||..+.+.. .....|...+..+.. +. +..+++++
T Consensus 8 ~~~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp EESSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred ecCCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence 3457899999999986 469999999999999998765421 112224333322222 11 34567788
Q ss_pred cCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCC-----CceEE
Q psy17863 116 SQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT-----RKHIM 190 (341)
Q Consensus 116 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 190 (341)
+.||.|++|++........... .... .+........+..+++.++ +.+++
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~-------------------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIF-------------------EKLD------LLDSDMKKHSFWALKWGASNDRLLSHRLV 140 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEE-------------------EEEC------CSCTTGGGSCEEEEEEECCC----CEEEE
T ss_pred eCCCcEEEEEccCCCceeeeec-------------------cccc------eeeeccCCCceEEEEEecCCCcccccEEE
Confidence 8888999888765432111100 0000 0000112223445555544 23444
Q ss_pred -EeCCCceEEEEccccc-------------------------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceee
Q psy17863 191 -SACGNNVKLWTAEEDY-------------------------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLE 244 (341)
Q Consensus 191 -~~~~~~i~~~~~~~~~-------------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 244 (341)
++.++.+++|++.... +...+.+++|+|++ +|++|+.|+.|++||+.+++++.
T Consensus 141 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~ 219 (393)
T d1sq9a_ 141 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLY 219 (393)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEE
T ss_pred EEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccc
Confidence 4457999999975321 34557899999998 78999999999999999887765
Q ss_pred ee------cCcccceeEEEEEeCCCCCEEEEecCCCc---EEEEeeeCCCceEEEEe-----------eeeccceEEEEE
Q psy17863 245 EY------KGHKSGDFRIECCLDSKDSQIFCGSSDGK---IYKWQLVDSSQISTLIH-----------SVGKAVVNSLCS 304 (341)
Q Consensus 245 ~~------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~-----------~~~~~~v~~~~~ 304 (341)
.+ .+|..+|.++ +|+|++++|++|+.|++ |++||+++++++..+.. .+|...|++++|
T Consensus 220 ~~~~~~~l~~h~~~V~~l--~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~f 297 (393)
T d1sq9a_ 220 NFESQHSMINNSNSIRSV--KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 297 (393)
T ss_dssp EEECCC---CCCCCEEEE--EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEE
T ss_pred ccccccccccccceEEEc--ccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeecc
Confidence 44 5688889888 89999999999998874 99999999988877641 268899999999
Q ss_pred cCCCcEEEEeC-CCcEEEEEcccccCCccc
Q psy17863 305 HPTRKHIMSAC-GNNVKLWTAEEDYGQAGL 333 (341)
Q Consensus 305 ~~~~~~l~~~~-d~~i~vw~~~~~~~~~~~ 333 (341)
+|++++|++++ |++|++||++++.....+
T Consensus 298 spd~~~l~S~s~D~~v~vWd~~~g~~~~~l 327 (393)
T d1sq9a_ 298 NDSGETLCSAGWDGKLRFWDVKTKERITTL 327 (393)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred CCCCCeeEEECCCCEEEEEECCCCCEEEEE
Confidence 99999999999 999999999987654443
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=9.6e-31 Score=219.39 Aligned_cols=308 Identities=11% Similarity=0.074 Sum_probs=211.7
Q ss_pred EEccCCC--EEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeee----
Q psy17863 20 RFNVDGS--YCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW---- 93 (341)
Q Consensus 20 ~~~~~~~--~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---- 93 (341)
.++.|.+ ++++.+.||+|+|||+.+++.+.++..|. .+..++|+|||+++++++.|++|++||+.+++.....
T Consensus 25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~ 103 (426)
T d1hzua2 25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI 103 (426)
T ss_dssp CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeC
Confidence 3545433 55778889999999999999999999764 5899999999999999999999999999988754322
Q ss_pred -cccCccEEEEEEcCCCcEEEEe-cCCCeEEEEEecCCCCcCeE----------EeecCCCceEEEeeccCeEEE-----
Q psy17863 94 -REHASKVTCVKFNEDSSVVISG-SQDNTVMMWDVKSRSHHPIQ----------CCLDSKDSQIFCGSSDGKIYK----- 156 (341)
Q Consensus 94 -~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~i~~----- 156 (341)
.+|...+.+++|+|||++++++ ..++.+.+||.......... ..........++.+.++...+
T Consensus 104 ~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~ 183 (426)
T d1hzua2 104 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183 (426)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC
Confidence 3566667778888999987554 57899999998876521111 011111223344444444443
Q ss_pred ------EEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC--CceEEEEccccc---------CCCCeEEEEEccC
Q psy17863 157 ------WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEEDY---------GQEPIVDACFTRD 219 (341)
Q Consensus 157 ------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~---------~~~~i~~~~~~~~ 219 (341)
++.......... .......+..+.++|++++++++.. +.+.+++..... ...+.....+.+.
T Consensus 184 ~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (426)
T d1hzua2 184 TGKVLLVNYKDIDNLTVT-SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHP 262 (426)
T ss_dssp TTEEEEEECSSSSSCEEE-EEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEET
T ss_pred CCeEEEEEeccccceeeE-EeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecC
Confidence 333333322221 2224456889999999998888763 667777766533 1122222333322
Q ss_pred CC---EEEEeecCCeEEEEeccc-------cceeeeecCcccceeEEEEEeCCCCCEEEE-------ecCCCcEEEEeee
Q psy17863 220 CQ---CILTCSTDECLRLFDKAT-------GELLEEYKGHKSGDFRIECCLDSKDSQIFC-------GSSDGKIYKWQLV 282 (341)
Q Consensus 220 ~~---~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~dg~i~iwd~~ 282 (341)
+. ..+....|+.+.+|+... ++....+.+|...+..+ +++|++++|++ ++.+++|+|||+.
T Consensus 263 ~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v--~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~ 340 (426)
T d1hzua2 263 KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI--KTHPKSSHLYVDTTFNPDARISQSVAVFDLK 340 (426)
T ss_dssp TTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCE--ECCTTCSEEEECCTTCSSHHHHTCEEEEETT
T ss_pred CCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEE--EcCCCCceEEEeecCCCCcccCCEEEEEECC
Confidence 22 122334567777776543 46778899999888888 89999999994 5668899999999
Q ss_pred CCCceEEEEe-------eeeccceEEEEEcCCCcEEEEe-----C-CCcEEEEEcccccCCc
Q psy17863 283 DSSQISTLIH-------SVGKAVVNSLCSHPTRKHIMSA-----C-GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 283 ~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~-----~-d~~i~vw~~~~~~~~~ 331 (341)
+++...++.. ..+...|.+++|||||++++.+ + ++.|+|||..+....+
T Consensus 341 t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~ 402 (426)
T d1hzua2 341 NLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA 402 (426)
T ss_dssp CTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEE
T ss_pred CCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEE
Confidence 9988776641 1345569999999999976432 3 7889999998876443
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.1e-31 Score=213.98 Aligned_cols=255 Identities=12% Similarity=0.091 Sum_probs=187.4
Q ss_pred ceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeee---ecccCccEEEEEEcCC-CcEEEEecCCCeE
Q psy17863 46 LLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRR---WREHASKVTCVKFNED-SSVVISGSQDNTV 121 (341)
Q Consensus 46 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~---~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i 121 (341)
+.+...++|...|++++|+|++++|++|+.||+|++||++++..... ..+|..+|.+++|+|+ +.+|++|+.||.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 45666789999999999999999999999999999999987654332 3369999999999985 5689999999999
Q ss_pred EEEEecCCCC----------cCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEE
Q psy17863 122 MMWDVKSRSH----------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS 191 (341)
Q Consensus 122 ~iwd~~~~~~----------~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (341)
++|++..... .............+++++.++.+++||++..............
T Consensus 82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~----------------- 144 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS----------------- 144 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCS-----------------
T ss_pred eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeeccccc-----------------
Confidence 9999887542 1223344556678889999999999998765544433322111
Q ss_pred eCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeee---cCcccceeEEEEEeCCCCCEEE
Q psy17863 192 ACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEY---KGHKSGDFRIECCLDSKDSQIF 268 (341)
Q Consensus 192 ~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~ 268 (341)
...........+.+++..+++++.|+.|++||+...+..... ..+....... ..+..++..++
T Consensus 145 -------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 210 (342)
T d1yfqa_ 145 -------------NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV-ALLPKEQEGYA 210 (342)
T ss_dssp -------------SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEE-EECSGGGCEEE
T ss_pred -------------ccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeee-EeecCCCCEEE
Confidence 011233455677888889999999999999999876543332 2233333333 23556677899
Q ss_pred EecCCCcEEEEeeeCCCce------EEEE-------eeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCCc
Q psy17863 269 CGSSDGKIYKWQLVDSSQI------STLI-------HSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 269 ~~~~dg~i~iwd~~~~~~~------~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~~ 331 (341)
+++.||.+.+|+....... ..+. ...|...|++++|+|++++||+|+ ||.|++||+++.....
T Consensus 211 ~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~ 287 (342)
T d1yfqa_ 211 CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287 (342)
T ss_dssp EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred eecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEE
Confidence 9999999999997654221 1111 124566899999999999999999 9999999998765443
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=1.6e-29 Score=200.83 Aligned_cols=235 Identities=23% Similarity=0.395 Sum_probs=185.9
Q ss_pred eeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEe
Q psy17863 47 LLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDV 126 (341)
Q Consensus 47 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 126 (341)
.+..+..|...|+|++ +|+++|++|+.||+|++||+++++++.++++|...|++++| ++++|++++.|+.|++|++
T Consensus 7 ~i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~ 82 (293)
T d1p22a2 7 RIHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 82 (293)
T ss_dssp CEECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred EEeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccc
Confidence 3444567888899865 47999999999999999999999999999999999999887 5779999999999999999
Q ss_pred cCCCC-------cCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEE
Q psy17863 127 KSRSH-------HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKL 199 (341)
Q Consensus 127 ~~~~~-------~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 199 (341)
..+.. .............++++..++.+.+|+...............
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 136 (293)
T d1p22a2 83 NTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG-------------------------- 136 (293)
T ss_dssp SSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECC--------------------------
T ss_pred ccccccccccccccccccccccccceeecccccceeEeeccccccccccccccc--------------------------
Confidence 87652 223334455666888889999999999877654333321111
Q ss_pred EEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEE
Q psy17863 200 WTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKW 279 (341)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 279 (341)
+...+....+. ...+++++.|+.+++||.++++.+..+.++...+..+ .+ ++.++++++.||.|++|
T Consensus 137 -------~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~--~~--~~~~l~~~~~dg~i~i~ 203 (293)
T d1p22a2 137 -------HRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL--QY--RDRLVVSGSSDNTIRLW 203 (293)
T ss_dssp -------CSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE--EE--ETTEEEEEETTSCEEEE
T ss_pred -------cccccccceec--ccccccccCCCceeeecCCCCcEEEEEcccccccccc--cC--CCCeEEEecCCCEEEEE
Confidence 23344444443 4567888999999999999999999999988877655 33 46689999999999999
Q ss_pred eeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 280 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
|+++.+.+.... .+...+.. +++++.+|++++ ||.|++|++....
T Consensus 204 d~~~~~~~~~~~--~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~ 249 (293)
T d1p22a2 204 DIECGACLRVLE--GHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAAL 249 (293)
T ss_dssp ETTTCCEEEEEC--CCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred ecccceeeeeec--ccceeeee--ccccceEEEEEcCCCEEEEEECCCCc
Confidence 999999888877 67777765 567889999999 9999999987643
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=9.8e-31 Score=207.88 Aligned_cols=233 Identities=14% Similarity=0.211 Sum_probs=176.2
Q ss_pred CcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEE
Q psy17863 44 RNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMM 123 (341)
Q Consensus 44 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 123 (341)
+.++++++++|..+|++++|+| |++|+.||+|++||+.++. ..|...|.++++++++ .+++++.|+++++
T Consensus 2 ~~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~ 71 (287)
T d1pgua2 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQ-EYSSISWDDTLKV 71 (287)
T ss_dssp EEEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTT-CCEEEETTTEEEE
T ss_pred CcceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCC-eEEEEeecccccc
Confidence 3578899999999999999987 9999999999999987543 5799999999998765 5789999999999
Q ss_pred EEecCCCC-cCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEc
Q psy17863 124 WDVKSRSH-HPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTA 202 (341)
Q Consensus 124 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 202 (341)
|++...+. .........+++.++....++.+.+|+..+.+....+..
T Consensus 72 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 119 (287)
T d1pgua2 72 NGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL-------------------------------- 119 (287)
T ss_dssp TTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC--------------------------------
T ss_pred ccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccc--------------------------------
Confidence 99875432 123334444555555555566666666665544433321
Q ss_pred ccccCCCCeEEEEEccCCCEEEEeecCC-eEEEEeccccceeeeec-CcccceeEEEEEeCCCCCEEEEecCCCcEEEEe
Q psy17863 203 EEDYGQEPIVDACFTRDCQCILTCSTDE-CLRLFDKATGELLEEYK-GHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQ 280 (341)
Q Consensus 203 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 280 (341)
.. ...++++++..+++++.++ .+++|++...+....+. .|...+..+ +|+|++.+|++|+.||.|++||
T Consensus 120 -----~~--~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~g~~dg~i~i~d 190 (287)
T d1pgua2 120 -----NS--PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI--SISPSETYIAAGDVMGKILLYD 190 (287)
T ss_dssp -----SS--CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEE--EECTTSSEEEEEETTSCEEEEE
T ss_pred -----cc--eeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEE--EeccCcccccccccccccccee
Confidence 11 2345677777788877765 69999988776655544 466677777 8999999999999999999999
Q ss_pred eeCCCceEEEEeeeeccceEEEEEcCC----------CcEEEEeC-CCcEEEEEccccc
Q psy17863 281 LVDSSQISTLIHSVGKAVVNSLCSHPT----------RKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
+.+++...... ..|..+|.+++|+|+ +.+|++++ |++|++|++++..
T Consensus 191 ~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~ 248 (287)
T d1pgua2 191 LQSREVKTSRW-AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM 248 (287)
T ss_dssp TTTTEEEECCS-CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred ecccccccccc-cccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC
Confidence 98877654322 278899999999875 46899999 9999999997643
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.97 E-value=7.2e-30 Score=213.63 Aligned_cols=298 Identities=10% Similarity=0.025 Sum_probs=198.9
Q ss_pred CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCcee--ee---ecccCc
Q psy17863 24 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPV--RR---WREHAS 98 (341)
Q Consensus 24 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~---~~~~~~ 98 (341)
+.-++++.+.+|+|.|||..+++.+.++..+ ..+..++|+|||+++++++.|+.+++||+.+++.. .. ...|.+
T Consensus 31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~ 109 (432)
T d1qksa2 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS 109 (432)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred CcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence 3334588899999999999999999999877 46999999999999999999999999999887642 22 234666
Q ss_pred cEEEEEEcCCCcEE-EEecCCCeEEEEEecCCCCcC-------------------e-EEeecCCCce-EEEeeccCeEEE
Q psy17863 99 KVTCVKFNEDSSVV-ISGSQDNTVMMWDVKSRSHHP-------------------I-QCCLDSKDSQ-IFCGSSDGKIYK 156 (341)
Q Consensus 99 ~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~-------------------~-~~~~~~~~~~-~~~~~~~g~i~~ 156 (341)
.+.+..|+|||++| ++++.++.+++||..+++... . .....+++.. +++...++.+.+
T Consensus 110 ~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~ 189 (432)
T d1qksa2 110 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL 189 (432)
T ss_dssp EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred eEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEE
Confidence 66777788899976 678889999999988765211 1 1122333333 456677899999
Q ss_pred EEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC--CceEEEEccccc------------CCCCeEEEEEccCCCE
Q psy17863 157 WQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEEDY------------GQEPIVDACFTRDCQC 222 (341)
Q Consensus 157 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~------------~~~~i~~~~~~~~~~~ 222 (341)
||..+.+........ ....+..++++|++++++++.. +.+.+++..... +........+...+..
T Consensus 190 ~d~~~~~~~~~~~i~-~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~ 268 (432)
T d1qksa2 190 VDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPV 268 (432)
T ss_dssp EETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEE
T ss_pred EEccCCCcceEEEEc-ccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCce
Confidence 998887655444333 3345789999999998877763 567777765422 2222223333333333
Q ss_pred EEEee-cCCeEEEEeccccc-------eeeeec-------------------------CcccceeEEEEEeCCCCCEEEE
Q psy17863 223 ILTCS-TDECLRLFDKATGE-------LLEEYK-------------------------GHKSGDFRIECCLDSKDSQIFC 269 (341)
Q Consensus 223 l~~~~-~d~~i~i~d~~~~~-------~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~l~~ 269 (341)
..+.. .++.+.+|+..... ....+. .|......+ ++ ||++.+++
T Consensus 269 ~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv--~v-pDg~~la~ 345 (432)
T d1qksa2 269 WATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSV--AV-FDIKAMTG 345 (432)
T ss_dssp EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCE--EE-EEGGGCCC
T ss_pred ecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEE--EE-Eechhhcc
Confidence 32222 24455555433211 111111 111111112 22 67888888
Q ss_pred ecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEe-----C-CCcEEEEEcccccCCc
Q psy17863 270 GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSA-----C-GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 270 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~-d~~i~vw~~~~~~~~~ 331 (341)
++.|+.+++|++.++..+ . .|...+.+++|||||++++.+ . ++.|.|||..+....+
T Consensus 346 ~s~d~~~k~w~~~~~~~l---~--~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~ 408 (432)
T d1qksa2 346 DGSDPEFKTLPIAEWAGI---T--EGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKH 408 (432)
T ss_dssp SSSCCCEEEECHHHHHTC---C--SSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred cccCCceEeccccccccc---C--CCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEe
Confidence 888999999987655333 2 456678999999999987554 2 5789999988876433
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=1.1e-29 Score=208.13 Aligned_cols=274 Identities=13% Similarity=0.099 Sum_probs=197.7
Q ss_pred eeCCcEEEEEEccCCCEEEEEeCCC--eEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCc
Q psy17863 11 CKQGAIRAVRFNVDGSYCLTCGSDK--KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQ 88 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~t~~~dg--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 88 (341)
+|...|++++|+|||++|++++.+. .|++||..+++. ..+..|...|.+++|+|++++|++++.++.+++|++.+++
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 118 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK 118 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecccccccceeccccccccccccccc
Confidence 6999999999999999998877553 799999987664 4677799999999999999999999999999999999999
Q ss_pred eeeeecccCccEEEEEEcCCCcEEEEe----------cCCCeEEEEEecCCCC--------cCeEEeecCCCceEEEeec
Q psy17863 89 PVRRWREHASKVTCVKFNEDSSVVISG----------SQDNTVMMWDVKSRSH--------HPIQCCLDSKDSQIFCGSS 150 (341)
Q Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~l~~~----------~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~ 150 (341)
....+..|...+.+++|+|+|++|+.+ ..++.+++|++.+++. ........+++..+++++.
T Consensus 119 ~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~ 198 (360)
T d1k32a3 119 PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSY 198 (360)
T ss_dssp EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred eeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeC
Confidence 999999899999999999999999854 3456799999987542 1223445566678999999
Q ss_pred cCeEEEEEccCCcceeee-----EeeecCceEEEEEECCCCceEEEeC----CCceEEEEc--cccc------CCCCeEE
Q psy17863 151 DGKIYKWQLVDSSQISTL-----IHSVGKAVVNSLCSHPTRKHIMSAC----GNNVKLWTA--EEDY------GQEPIVD 213 (341)
Q Consensus 151 ~g~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~--~~~~------~~~~i~~ 213 (341)
++.+.+|+.......... ...........+.+++++..+.... ....++|.+ .... +...+..
T Consensus 199 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (360)
T d1k32a3 199 RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILI 278 (360)
T ss_dssp CCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEE
T ss_pred CCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceE
Confidence 999999987654322110 1111122233344555555544332 111222322 2111 2223333
Q ss_pred EEEccC---CCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEE
Q psy17863 214 ACFTRD---CQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL 290 (341)
Q Consensus 214 ~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 290 (341)
+.+.+. +.++++++.++.+++||+.+++.. .|...+..+ +|+|||++|++++.||.|++||+++++...++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~--~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~ 352 (360)
T d1k32a3 279 YSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDL--RLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352 (360)
T ss_dssp EECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEE--EECTTSCEEEEEETTSCEEEEESSCTTSCEEC
T ss_pred EEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEE--EECCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence 333333 234667778899999999876542 234456655 89999999999999999999999999888777
Q ss_pred E
Q psy17863 291 I 291 (341)
Q Consensus 291 ~ 291 (341)
.
T Consensus 353 ~ 353 (360)
T d1k32a3 353 E 353 (360)
T ss_dssp C
T ss_pred E
Confidence 6
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.96 E-value=3.3e-26 Score=182.53 Aligned_cols=262 Identities=12% Similarity=0.106 Sum_probs=197.0
Q ss_pred EEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEE-EecCCCcEEEEECCCCceeeeecccCccEEEEEEc
Q psy17863 28 CLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKSVILWEVTTGQPVRRWREHASKVTCVKFN 106 (341)
Q Consensus 28 l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~ 106 (341)
.++++.|++|.+||+++++.+++++.. .....++|+|||++|+ +++.++.|++||+.+++.+..+..+.. +..++|+
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~ 82 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVS 82 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEEC
T ss_pred EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccc
Confidence 346678999999999999999988744 4578999999999875 667789999999999999998886654 6889999
Q ss_pred CCCcEEEE-ecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCC
Q psy17863 107 EDSSVVIS-GSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 185 (341)
Q Consensus 107 ~~~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (341)
+++..++. +..++.+.+|+..+++ ....+. .......+.++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~---~~~~~~~~~~~~d 126 (301)
T d1l0qa2 83 PDGKQVYVTNMASSTLSVIDTTSNT---------------------------------VAGTVK---TGKSPLGLALSPD 126 (301)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTE---------------------------------EEEEEE---CSSSEEEEEECTT
T ss_pred cccccccccccccceeeecccccce---------------------------------eeeecc---ccccceEEEeecC
Confidence 98886554 4556667777665432 222222 2234677889999
Q ss_pred CceEEEeC--CCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecC-CeEEEEeccccceeeeecCcccceeEE
Q psy17863 186 RKHIMSAC--GNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTD-ECLRLFDKATGELLEEYKGHKSGDFRI 256 (341)
Q Consensus 186 ~~~~~~~~--~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~ 256 (341)
+..++... +..+.+|+..... .......+.++|+++.+++++.+ +.+.+|+....+....+..+.. ...+
T Consensus 127 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 205 (301)
T d1l0qa2 127 GKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAA-PSGI 205 (301)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSE-EEEE
T ss_pred CCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeecccccCC-ccee
Confidence 98876654 3668888876543 45667889999999988877765 6677888777776666665543 3334
Q ss_pred EEEeCCCCCEEEEec---CCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEE-EEeC-CCcEEEEEcccccCCc
Q psy17863 257 ECCLDSKDSQIFCGS---SDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHI-MSAC-GNNVKLWTAEEDYGQA 331 (341)
Q Consensus 257 ~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~-d~~i~vw~~~~~~~~~ 331 (341)
+++++++.++.+. .++.|++||+.+++.+..+. ....+.+++|+|||++| ++++ |+.|++||++++...+
T Consensus 206 --~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~---~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~ 280 (301)
T d1l0qa2 206 --AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP---VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITA 280 (301)
T ss_dssp --EECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE---CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred --eccccccccccccccceeeeeeeeecCCCeEEEEEc---CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence 7899999876553 45789999999999888876 34568999999999977 5666 9999999998876544
Q ss_pred cc
Q psy17863 332 GL 333 (341)
Q Consensus 332 ~~ 333 (341)
.+
T Consensus 281 ~~ 282 (301)
T d1l0qa2 281 TM 282 (301)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.96 E-value=7.9e-29 Score=201.76 Aligned_cols=302 Identities=10% Similarity=0.020 Sum_probs=190.3
Q ss_pred EEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec-CcccceeEEEEecCCCEEE-EecCCCcEEEEECCCCceeeeeccc
Q psy17863 19 VRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-GHAHEVNDATAACDSSQIA-SGASDKSVILWEVTTGQPVRRWREH 96 (341)
Q Consensus 19 ~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~ 96 (341)
++|++++++|++++.+++|.+||+.+++.+.+++ .+...+.+++|+|||++++ ++..++.|.+||+.+++.+..+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 5789999999999999999999999999999887 4566788999999999874 5567899999999999888766432
Q ss_pred C------ccEEEEEEcCCCcEEEEecC------------CCeEEEEEecCCCCc-CeEEeecCCCceEEEeeccCeEEEE
Q psy17863 97 A------SKVTCVKFNEDSSVVISGSQ------------DNTVMMWDVKSRSHH-PIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 97 ~------~~v~~~~~~~~~~~l~~~~~------------d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
. ..+..++|+|||+++++++. ++.+.+|+..+++.. .+.....+....++..+.++.+.++
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA 161 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence 2 23567899999999988764 344555555443321 1222222222333444444444443
Q ss_pred EccCC----cceeeeEeeecCceEEEEEECCCCceEEEeCC--CceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCe
Q psy17863 158 QLVDS----SQISTLIHSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDEC 231 (341)
Q Consensus 158 d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 231 (341)
+-... .................+.++|++..+..... +.+.+++ ....+.+....+.++..+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 231 (346)
T d1jmxb_ 162 GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY----------TIARFKDDKQDPATADLLYG 231 (346)
T ss_dssp SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEE----------EEEEC-------CCCEEEEE
T ss_pred CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeee----------eeeeeccCceeEeeccCCce
Confidence 31100 00000000000111122223333332222211 1122111 11122233444556666778
Q ss_pred EEEEeccccceeee-ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcE
Q psy17863 232 LRLFDKATGELLEE-YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKH 310 (341)
Q Consensus 232 i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 310 (341)
+.+||..++..... +..+...+... .+++++.+++... ++.|++||..+++.+..+. +...+.+++|+|||++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~---~~~~~~~va~s~DG~~ 305 (346)
T d1jmxb_ 232 YLSVDLKTGKTHTQEFADLTELYFTG--LRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN---LDHTYYCVAFDKKGDK 305 (346)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEE--EECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE---CSSCCCEEEECSSSSC
T ss_pred EEEEECCCCceEEEEeecccceeEEE--EEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc---CCCCEEEEEEcCCCCE
Confidence 89999888775443 34455555555 7888888887765 4579999999998888776 4457999999999999
Q ss_pred EEEeC-CCcEEEEEcccccCCccceee
Q psy17863 311 IMSAC-GNNVKLWTAEEDYGQAGLSSL 336 (341)
Q Consensus 311 l~~~~-d~~i~vw~~~~~~~~~~~~~~ 336 (341)
|++++ |+.|++||+++.+..+.+.-.
T Consensus 306 l~v~~~d~~v~v~D~~t~~~i~~i~~p 332 (346)
T d1jmxb_ 306 LYLGGTFNDLAVFNPDTLEKVKNIKLP 332 (346)
T ss_dssp EEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEEeCCCcEEEEECccCCEEEEEECC
Confidence 99999 999999999987766555433
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=1e-27 Score=200.88 Aligned_cols=299 Identities=10% Similarity=0.044 Sum_probs=198.1
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeE--e---cCcccceeEEEEecCCCEEEEe-cCC
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKT--Y---GGHAHEVNDATAACDSSQIASG-ASD 76 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~--~---~~~~~~v~~~~~~~~~~~l~~~-~~d 76 (341)
.+++.+++.|. .+..++|||||++|++++.|++|++||+.+++.... + .+|...+.+++|+|||++++++ ..+
T Consensus 52 ~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~ 130 (426)
T d1hzua2 52 KKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP 130 (426)
T ss_dssp CSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEES
T ss_pred CcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCC
Confidence 46788998875 589999999999999999999999999998875433 2 3566777788889999987655 578
Q ss_pred CcEEEEECCCCceeeeecccCc-----------cEEEEEEcCCCcEEEEecC-CCeEEEEEecCCCC----------cCe
Q psy17863 77 KSVILWEVTTGQPVRRWREHAS-----------KVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSRSH----------HPI 134 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~----------~~~ 134 (341)
+.+++||..+++++..+..|.. ....+.+++++..++.... .+.+.+++...... .+.
T Consensus 131 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 210 (426)
T d1hzua2 131 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLA 210 (426)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEE
T ss_pred CeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccE
Confidence 9999999999988776654433 3455666666665554433 34555555444321 112
Q ss_pred EEeecCCCceEEEe-eccCeEEEEEccCCcceeeeEeeecCceEEEEEECCC--CceEEEeC--CCceEEEEcccc----
Q psy17863 135 QCCLDSKDSQIFCG-SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT--RKHIMSAC--GNNVKLWTAEED---- 205 (341)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~i~~~~~~~~---- 205 (341)
.....+.+.+++++ ..+..+.+++..+.+..................+.+. +....... ++.+.+|+....
T Consensus 211 ~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~ 290 (426)
T d1hzua2 211 DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ 290 (426)
T ss_dssp EEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTT
T ss_pred eeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccccc
Confidence 23344455555444 4567789999988877766543322211111221111 11121111 244444443321
Q ss_pred ----------cCCCCeEEEEEccCCCEEEE-------eecCCeEEEEeccccceeeeec---------CcccceeEEEEE
Q psy17863 206 ----------YGQEPIVDACFTRDCQCILT-------CSTDECLRLFDKATGELLEEYK---------GHKSGDFRIECC 259 (341)
Q Consensus 206 ----------~~~~~i~~~~~~~~~~~l~~-------~~~d~~i~i~d~~~~~~~~~~~---------~~~~~~~~~~~~ 259 (341)
.|...+..++|+|++++|++ +..+++|++||+.+++...++. .+...+..+ +
T Consensus 291 ~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~--~ 368 (426)
T d1hzua2 291 YAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQP--E 368 (426)
T ss_dssp TBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEE--E
T ss_pred ccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEE--E
Confidence 25677899999999999994 5568899999999988766543 233334444 8
Q ss_pred eCCCCCEEEE-----ecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEE
Q psy17863 260 LDSKDSQIFC-----GSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 312 (341)
Q Consensus 260 ~~~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 312 (341)
|+|||++++. ++.+|.|+|||..+++....+. ++. .++|+|++-+
T Consensus 369 fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~--~~~------~~tp~Gk~~~ 418 (426)
T d1hzua2 369 YNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK--DPR------LITPTGKFNV 418 (426)
T ss_dssp ECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC--CTT------CCSEEEEEEH
T ss_pred ECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC--CCC------ccCCCceEeE
Confidence 9999997743 2468899999999999888876 332 3357777644
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=2.5e-27 Score=192.04 Aligned_cols=276 Identities=10% Similarity=0.031 Sum_probs=200.4
Q ss_pred CEEEEEeCCCeEEEEcCCCcceeeEecC--cccceeEEEEecCCCEE-EEecCCCcEEEEECCCCceeeeecccCc----
Q psy17863 26 SYCLTCGSDKKIKLWNPYRNLLLKTYGG--HAHEVNDATAACDSSQI-ASGASDKSVILWEVTTGQPVRRWREHAS---- 98 (341)
Q Consensus 26 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~---- 98 (341)
+|+++++.|++|++||+++++.+.++.. +...+..++|+|||+++ ++++.++.|.+||+.+++.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 5899999999999999999999998864 34567899999999987 4667899999999999999887765432
Q ss_pred -cEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceE
Q psy17863 99 -KVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVV 177 (341)
Q Consensus 99 -~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~ 177 (341)
.+..++|+|++++++++..+.....|... ..+..+.+||..+.+....+... ..+
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~---------------------~~~~~~~~~d~~~~~~~~~~~~~---~~~ 137 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFE---------------------VQPTRVALYDAETLSRRKAFEAP---RQI 137 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEE---------------------ECCCEEEEEETTTTEEEEEEECC---SSC
T ss_pred cceeeEEEcCCCcEEEEeecCCcceeeecc---------------------ccccceeeccccCCeEEEecccc---CCc
Confidence 34578999999999988766555444432 23466778888877766655432 346
Q ss_pred EEEEECCCCceEEEeCCCceEEEEccccc------CCCC------------------------eEEEEEccCCCEEEEee
Q psy17863 178 NSLCSHPTRKHIMSACGNNVKLWTAEEDY------GQEP------------------------IVDACFTRDCQCILTCS 227 (341)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~------------------------i~~~~~~~~~~~l~~~~ 227 (341)
..++++|+++++++++ +...+|+..... .... ........+......+.
T Consensus 138 ~~~~~s~dg~~l~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (337)
T d1pbyb_ 138 TMLAWARDGSKLYGLG-RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTA 216 (337)
T ss_dssp CCEEECTTSSCEEEES-SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGG
T ss_pred eEEEEcCCCCEEEEEc-CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecc
Confidence 7788999999888875 446677765432 0000 00111111222223334
Q ss_pred cCCeEEEEeccccceeee-ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcC
Q psy17863 228 TDECLRLFDKATGELLEE-YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP 306 (341)
Q Consensus 228 ~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 306 (341)
.++.+.+|+..++..... +..+....... .+++++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~s~ 289 (337)
T d1pbyb_ 217 YRTGLLTMDLETGEMAMREVRIMDVFYFST--AVNPAKTRAFGA--YNVLESFDLEKNASIKRVP---LPHSYYSVNVST 289 (337)
T ss_dssp EEEEEEEEETTTCCEEEEEEEECSSCEEEE--EECTTSSEEEEE--ESEEEEEETTTTEEEEEEE---CSSCCCEEEECT
T ss_pred cCccEEEEEcCCCcEEEEEecCCCcceEEE--EecccceEEEEc--cccEEEEECCCCcEEEEEc---CCCCEEEEEECC
Confidence 456788899888775443 33444444444 788999888766 5889999999999988886 556789999999
Q ss_pred CCcEEEEeC-CCcEEEEEcccccCCccc
Q psy17863 307 TRKHIMSAC-GNNVKLWTAEEDYGQAGL 333 (341)
Q Consensus 307 ~~~~l~~~~-d~~i~vw~~~~~~~~~~~ 333 (341)
||++|++++ |+.|++||+++.+....+
T Consensus 290 dG~~l~v~~~~~~i~v~D~~t~~~v~~i 317 (337)
T d1pbyb_ 290 DGSTVWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp TSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 999999999 999999999886655443
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=3.2e-26 Score=191.41 Aligned_cols=282 Identities=8% Similarity=0.056 Sum_probs=186.0
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcce--eeEe---cCcccceeEEEEecCCCEE-EEecCC
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLL--LKTY---GGHAHEVNDATAACDSSQI-ASGASD 76 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~--~~~~---~~~~~~v~~~~~~~~~~~l-~~~~~d 76 (341)
+++++++..|. .+..++|||||+++++++.|+.|++||+.+++. ..++ ..|.+.+.+..|+|||++| +++..+
T Consensus 52 ~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~ 130 (432)
T d1qksa2 52 YEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP 130 (432)
T ss_dssp CCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET
T ss_pred CcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCC
Confidence 56788898774 699999999999999999999999999987763 2333 3566667777888999986 677789
Q ss_pred CcEEEEECCCCceeeeecc-----------cCccEEEEEEcCCCcEE-EEecCCCeEEEEEecCCCCc---------Ce-
Q psy17863 77 KSVILWEVTTGQPVRRWRE-----------HASKVTCVKFNEDSSVV-ISGSQDNTVMMWDVKSRSHH---------PI- 134 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~---------~~- 134 (341)
++|++||..+++.+..+.. +......+.++|++..+ ++...++.|.+||..+.+.. ..
T Consensus 131 ~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~ 210 (432)
T d1qksa2 131 PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH 210 (432)
T ss_dssp TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEE
T ss_pred CeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccc
Confidence 9999999999988776643 34556778999988765 55667899999987765421 12
Q ss_pred EEeecCCCceEEEee-ccCeEEEEEccCCcceeeeEeee---cCce----------------------------------
Q psy17863 135 QCCLDSKDSQIFCGS-SDGKIYKWQLVDSSQISTLIHSV---GKAV---------------------------------- 176 (341)
Q Consensus 135 ~~~~~~~~~~~~~~~-~~g~i~~~d~~~~~~~~~~~~~~---~~~~---------------------------------- 176 (341)
.....+++.++++++ .++.+.++|..+.+....+.... +...
T Consensus 211 ~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~ 290 (432)
T d1qksa2 211 DGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHP 290 (432)
T ss_dssp EEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT
T ss_pred cceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccccc
Confidence 233444445555555 45678888887766554443211 1111
Q ss_pred -----EEEEEECCCCceEEEeC-CCceEEEEcccccCCC-CeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCc
Q psy17863 177 -----VNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQE-PIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGH 249 (341)
Q Consensus 177 -----~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 249 (341)
+....+.|++..++++. ++..++|......... ...++++ ||++.+++++.|+.+++|++.++..+ ..|
T Consensus 291 ~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l---~~~ 366 (432)
T d1qksa2 291 DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI---TEG 366 (432)
T ss_dssp TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTC---CSS
T ss_pred ccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceEeccccccccc---CCC
Confidence 22223333333332222 2444444433222111 1223333 67777777777777777776554332 345
Q ss_pred ccceeEEEEEeCCCCCEEEEec-----CCCcEEEEeeeCCCceEEEE
Q psy17863 250 KSGDFRIECCLDSKDSQIFCGS-----SDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 250 ~~~~~~~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~ 291 (341)
...+..+ +|+|||++++.+. .+|.|.|||..++++...+.
T Consensus 367 ~~~v~~~--~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~ 411 (432)
T d1qksa2 367 QPRVVQG--EFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 411 (432)
T ss_dssp CCEEEEE--EECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCcEEEe--EECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEec
Confidence 5555544 8999999885543 57899999999998877776
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.94 E-value=4.7e-23 Score=164.05 Aligned_cols=247 Identities=9% Similarity=0.086 Sum_probs=186.0
Q ss_pred ceeeeEEeeeCCcEEEEEEccCCCEEE-EEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEE-EecCCCcEE
Q psy17863 3 YTCVQTIDCKQGAIRAVRFNVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKSVI 80 (341)
Q Consensus 3 ~~~~~~l~~h~~~v~~~~~~~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~ 80 (341)
.+.+++++.. ..+..++|+|||++|+ +++.++.|++||+.+++.+.++..+. .+..+.|++++..++ ++..++.+.
T Consensus 22 ~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (301)
T d1l0qa2 22 NKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLS 99 (301)
T ss_dssp TEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceee
Confidence 3556677644 4578999999999875 66678999999999999999988665 468899999998655 456678899
Q ss_pred EEECCCCceeeeecccCccEEEEEEcCCCcEEE-EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEc
Q psy17863 81 LWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQL 159 (341)
Q Consensus 81 iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~ 159 (341)
+|+..+++....+..+ ....++.|+|++..++ ++..++.+.+|+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~----------------------------- 149 (301)
T d1l0qa2 100 VIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA----------------------------- 149 (301)
T ss_dssp EEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-----------------------------
T ss_pred ecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccc-----------------------------
Confidence 9999999888887744 5668899999998775 44556777777765533
Q ss_pred cCCcceeeeEeeecCceEEEEEECCCCceEEEeCC--CceEEEEccccc------CCCCeEEEEEccCCCEEEEeec---
Q psy17863 160 VDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCST--- 228 (341)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~--- 228 (341)
....+. ....+..+.++|++..++++.. +.+.+|+..... .......++++++++.++++..
T Consensus 150 ----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~ 222 (301)
T d1l0qa2 150 ----VINTVS---VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKY 222 (301)
T ss_dssp ----EEEEEE---CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSS
T ss_pred ----eeeecc---cCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccce
Confidence 222221 1233677888888887766653 455566554432 4456778899999998876544
Q ss_pred CCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEE-EEecCCCcEEEEeeeCCCceEEEE
Q psy17863 229 DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQI-FCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 229 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
++.|++||..+++.+..+..+. .+..+ +++|+|++| ++++.++.|++||+.+++.+.+++
T Consensus 223 ~~~v~v~D~~t~~~~~~~~~~~-~~~~v--a~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 223 FNTVSMIDTGTNKITARIPVGP-DPAGI--AVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp CCEEEEEETTTTEEEEEEECCS-SEEEE--EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eeeeeeeecCCCeEEEEEcCCC-CEEEE--EEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 4679999999999988887554 34555 899999986 577889999999999999988887
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.94 E-value=4.4e-23 Score=169.48 Aligned_cols=291 Identities=8% Similarity=0.004 Sum_probs=211.7
Q ss_pred eeeCCcEEEEEEccCCCEEEEEe-----CCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEec----------
Q psy17863 10 DCKQGAIRAVRFNVDGSYCLTCG-----SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA---------- 74 (341)
Q Consensus 10 ~~h~~~v~~~~~~~~~~~l~t~~-----~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------- 74 (341)
..+.+++..++++|||+.++... ..+.|.+||..+++.+.++..+..+ .++|+|||++|++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence 46889999999999999987642 3467999999999999998766544 799999999998875
Q ss_pred CCCcEEEEECCCCceeeeecccCccE-------EEEEEcCCCcEEEEe--cCCCeEEEEEecCCCC-----cCeEEeecC
Q psy17863 75 SDKSVILWEVTTGQPVRRWREHASKV-------TCVKFNEDSSVVISG--SQDNTVMMWDVKSRSH-----HPIQCCLDS 140 (341)
Q Consensus 75 ~dg~i~iw~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~-----~~~~~~~~~ 140 (341)
.++.|.+||..+++.+..+..+.... ..+.|+++++.++.. ..++.+.+|+....+. .+......+
T Consensus 95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 174 (373)
T d2madh_ 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHP 174 (373)
T ss_pred cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEec
Confidence 35789999999999988876655443 457788888876554 3456788888776542 112222233
Q ss_pred CC-ceEEEeeccCeEEEEEccCCcceeeeEeee----cCceEEEEEECCCCceEEEeCCCceEEEEccccc---------
Q psy17863 141 KD-SQIFCGSSDGKIYKWQLVDSSQISTLIHSV----GKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY--------- 206 (341)
Q Consensus 141 ~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------- 206 (341)
.+ ..+++.+.|+.+.+|+....+......... .........+.+++..+....++.+.+|+.....
T Consensus 175 ~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 254 (373)
T d2madh_ 175 GAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDA 254 (373)
T ss_pred CCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeecc
Confidence 33 356788999999999998877666554322 1223455667788878877777888888766532
Q ss_pred ----------CCCCeEEEEEccCCCEE----------EEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCE
Q psy17863 207 ----------GQEPIVDACFTRDCQCI----------LTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ 266 (341)
Q Consensus 207 ----------~~~~i~~~~~~~~~~~l----------~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (341)
.......+++++++..+ +....++.+.+||..+++.+..+. +...+..+ +|+|||+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~--a~spDG~~ 331 (373)
T d2madh_ 255 LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAI--SVAQDGGP 331 (373)
T ss_pred ccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEE--EECCCCCE
Confidence 11233445666666554 345566789999999999888776 44445555 89999984
Q ss_pred --EEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCC
Q psy17863 267 --IFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 267 --l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
+++++.|+.|++||+.+++.+..+. .+....+.+++.++
T Consensus 332 ~l~vt~~~d~~v~v~D~~tg~~~~~~~--~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 332 DLYALSAGTEVLHIYDAGAGDQDQSTV--ELGSGPQVLSVMNE 372 (373)
T ss_pred EEEEEeCCCCeEEEEECCCCCEEEEEC--CCCCCCcEEEEecC
Confidence 4688999999999999999999998 56666777776543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=3.9e-22 Score=161.06 Aligned_cols=268 Identities=9% Similarity=0.149 Sum_probs=180.2
Q ss_pred EEEEEeCCCeEEEEcCCCcceeeEe--cCcccceeEEEEecCCCEEEEe-cCCCcEEEEECCCCceeeee---cccCccE
Q psy17863 27 YCLTCGSDKKIKLWNPYRNLLLKTY--GGHAHEVNDATAACDSSQIASG-ASDKSVILWEVTTGQPVRRW---REHASKV 100 (341)
Q Consensus 27 ~l~t~~~dg~i~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~---~~~~~~v 100 (341)
.+++++.|++|++|++.+...+..+ ..|.+.+..++|+|||++|+++ ..|+.|.+|++........+ ..+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 4567788999999998765433332 2478899999999999998655 45899999999876543332 2244567
Q ss_pred EEEEEcCCCcEEEEecC-CCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEE
Q psy17863 101 TCVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNS 179 (341)
Q Consensus 101 ~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 179 (341)
..++|+|||++|++++. ++.+.+|+..... .........+...+.+
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~ 132 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGL---------------------------------PVGVVDVVEGLDGCHS 132 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTE---------------------------------EEEEEEEECCCTTBCC
T ss_pred eEEEEcCCCCEEeecccCCCceeeecccccc---------------------------------ceecccccCCCccceE
Confidence 78999999999988875 5677777765432 1111222223344667
Q ss_pred EEECCCCceEEEeCC--CceEEEEccccc-------------CCCCeEEEEEccCCCEEEEee-cCCeEEEEeccccce-
Q psy17863 180 LCSHPTRKHIMSACG--NNVKLWTAEEDY-------------GQEPIVDACFTRDCQCILTCS-TDECLRLFDKATGEL- 242 (341)
Q Consensus 180 ~~~~~~~~~~~~~~~--~~i~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~- 242 (341)
+.++|+++.++.... ..+.+|+..... .......++|++++.+++... ..+...+++......
T Consensus 133 v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 212 (333)
T d1ri6a_ 133 ANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN 212 (333)
T ss_dssp CEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC
T ss_pred EEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccc
Confidence 889999998877763 567778765432 334567899999998876554 455677777543221
Q ss_pred ---eeeec----CcccceeEEEEEeCCCCCEEEE-ecCCCcEEEEeeeCCCceEEEE-eeeeccceEEEEEcCCCcEEEE
Q psy17863 243 ---LEEYK----GHKSGDFRIECCLDSKDSQIFC-GSSDGKIYKWQLVDSSQISTLI-HSVGKAVVNSLCSHPTRKHIMS 313 (341)
Q Consensus 243 ---~~~~~----~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~ 313 (341)
..... ...........++++++++++. +..++.+.+|++.......... .......+.+++|+|||++|++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~v 292 (333)
T d1ri6a_ 213 IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIA 292 (333)
T ss_dssp CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEE
T ss_pred eeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEE
Confidence 11111 1122222333478999987654 4667899999987765544443 2234456788999999999887
Q ss_pred eC--CCcEEEEEcccc
Q psy17863 314 AC--GNNVKLWTAEED 327 (341)
Q Consensus 314 ~~--d~~i~vw~~~~~ 327 (341)
++ ++.|++|+++..
T Consensus 293 a~~~~~~v~v~~id~~ 308 (333)
T d1ri6a_ 293 AGQKSHHISVYEIVGE 308 (333)
T ss_dssp ECTTTCEEEEEEEETT
T ss_pred EECCCCeEEEEEEECC
Confidence 76 789999977643
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.92 E-value=4.9e-23 Score=166.49 Aligned_cols=247 Identities=9% Similarity=0.052 Sum_probs=174.1
Q ss_pred ceeeeEEeee--CCcEEEEEEccCCCEEE-EEeCCCeEEEEcCCCcceeeEecCcc-----cceeEEEEecCCCEEEEec
Q psy17863 3 YTCVQTIDCK--QGAIRAVRFNVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGGHA-----HEVNDATAACDSSQIASGA 74 (341)
Q Consensus 3 ~~~~~~l~~h--~~~v~~~~~~~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~ 74 (341)
.++++++..+ ...+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+. ..+..++|+|++++++++.
T Consensus 21 ~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~ 100 (337)
T d1pbyb_ 21 MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYE 100 (337)
T ss_dssp TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEE
T ss_pred CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEee
Confidence 3566777654 45678999999999874 66779999999999999988876543 3456799999999998775
Q ss_pred ------------CCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEe-----
Q psy17863 75 ------------SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCC----- 137 (341)
Q Consensus 75 ------------~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----- 137 (341)
.++.+.+||..+++....+.. ...+..++|+|+++++++++.+ +.+||..+.+.......
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~ 177 (337)
T d1pbyb_ 101 SPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEA 177 (337)
T ss_dssp EEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTT
T ss_pred cCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccc
Confidence 457899999999998888774 4567889999999999998754 67788776541110000
Q ss_pred --ecCCC-ceE-EEe-----------------------eccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEE
Q psy17863 138 --LDSKD-SQI-FCG-----------------------SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIM 190 (341)
Q Consensus 138 --~~~~~-~~~-~~~-----------------------~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (341)
...++ ..+ ..+ ..++.+.+|+..++..... .+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-------- 236 (337)
T d1pbyb_ 178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR-------------EV-------- 236 (337)
T ss_dssp TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE-------------EE--------
T ss_pred cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEE-------------Ee--------
Confidence 00000 000 011 1112233333322211111 00
Q ss_pred EeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEe
Q psy17863 191 SACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG 270 (341)
Q Consensus 191 ~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 270 (341)
..+......+.++|++.+++.+ ++.+++||+.+++.+..+. +...+..+ +|+|+|++|+++
T Consensus 237 --------------~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~--~~s~dG~~l~v~ 297 (337)
T d1pbyb_ 237 --------------RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSV--NVSTDGSTVWLG 297 (337)
T ss_dssp --------------EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEE--EECTTSCEEEEE
T ss_pred --------------cCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEE--EECCCCCEEEEE
Confidence 1134556777888888887765 5789999999999988876 34456666 899999999999
Q ss_pred cCCCcEEEEeeeCCCceEEEEe
Q psy17863 271 SSDGKIYKWQLVDSSQISTLIH 292 (341)
Q Consensus 271 ~~dg~i~iwd~~~~~~~~~~~~ 292 (341)
+.++.|++||..+++.+.++..
T Consensus 298 ~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 298 GALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp SBSSEEEEEETTTCCEEEEEEC
T ss_pred eCCCcEEEEECCCCcEEEEEEC
Confidence 9999999999999999988873
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=3e-22 Score=163.27 Aligned_cols=286 Identities=10% Similarity=0.055 Sum_probs=192.0
Q ss_pred cEEEEEEccCCCEEEEEe-----CCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEec----------CCCcE
Q psy17863 15 AIRAVRFNVDGSYCLTCG-----SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA----------SDKSV 79 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~-----~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i 79 (341)
++.-.+.+||++.+++.. .++.|.+||..+++.+.++..+.. ..++|+|||++|++++ .|+.|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence 344456789999987653 356799999999999998875544 4799999999887653 47889
Q ss_pred EEEECCCCceeeeecccC-------ccEEEEEEcCCCcEEEEec--CCCeEEEEEecCCCCcCe------EEeecCCCce
Q psy17863 80 ILWEVTTGQPVRRWREHA-------SKVTCVKFNEDSSVVISGS--QDNTVMMWDVKSRSHHPI------QCCLDSKDSQ 144 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~------~~~~~~~~~~ 144 (341)
++||..+++.+..+..+. .....++|+|++++++.+. .+..+.+|+..+++.... ..........
T Consensus 81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d2bbkh_ 81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT 160 (355)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred EEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcc
Confidence 999999999887765332 2234579999999887764 567889999887652111 0111112234
Q ss_pred EEEeeccCeEEEEEccCCcceeeeEeee----cCceEEEEEECCCCceEEE-eCCCceEEEEccccc-------------
Q psy17863 145 IFCGSSDGKIYKWQLVDSSQISTLIHSV----GKAVVNSLCSHPTRKHIMS-ACGNNVKLWTAEEDY------------- 206 (341)
Q Consensus 145 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~------------- 206 (341)
.+..+.|+....+............... ....+....+.+++..++. ..++.+.+|+.....
T Consensus 161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 240 (355)
T d2bbkh_ 161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA 240 (355)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred eEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccc
Confidence 4555666666666554444333322111 1122334455555555554 446889999887643
Q ss_pred ------CCCCeEEEEEccCCCEEEEeecC----------CeEEEEeccccceeeeecCcccceeEEEEEeCCCCC--EEE
Q psy17863 207 ------GQEPIVDACFTRDCQCILTCSTD----------ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS--QIF 268 (341)
Q Consensus 207 ------~~~~i~~~~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~ 268 (341)
.......+++++++..++....+ ..|.+||..+++.+..+... ..+..+ +++|||+ +++
T Consensus 241 ~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-~~~~~~--a~spDG~~~l~v 317 (355)
T d2bbkh_ 241 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSI--NVSQDEKPLLYA 317 (355)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEE--EECCSSSCEEEE
T ss_pred eEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC-CCEEEE--EEcCCCCeEEEE
Confidence 11233458899999988765543 46999999999988887643 334555 8999997 456
Q ss_pred EecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCC
Q psy17863 269 CGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 269 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
+++.|+.|++||+++++.+.++. .+......+.+.++
T Consensus 318 ~~~~d~~i~v~D~~tg~~~~~i~--~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 318 LSTGDKTLYIHDAESGEELRSVN--QLGHGPQVITTADM 354 (355)
T ss_dssp EETTTTEEEEEETTTCCEEEEEC--CCCSSCCEEECCCC
T ss_pred EECCCCEEEEEECCCCCEEEEEe--CcCCCccEEEeCCC
Confidence 77889999999999999999887 44444455554443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=2.4e-20 Score=151.07 Aligned_cols=246 Identities=9% Similarity=-0.006 Sum_probs=177.7
Q ss_pred ceeeeEEee-eCCcEEEEEEccCCCEEE-EEeCCCeEEEEcCCCcceeeEecCcc------cceeEEEEecCCCEEEEec
Q psy17863 3 YTCVQTIDC-KQGAIRAVRFNVDGSYCL-TCGSDKKIKLWNPYRNLLLKTYGGHA------HEVNDATAACDSSQIASGA 74 (341)
Q Consensus 3 ~~~~~~l~~-h~~~v~~~~~~~~~~~l~-t~~~dg~i~iw~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~ 74 (341)
.+++++++. |...+.+++|+|||++++ ++..++.|++||+.+++.+..+.... ..+..++|+|||+++++++
T Consensus 28 ~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~ 107 (346)
T d1jmxb_ 28 DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV 107 (346)
T ss_dssp TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred CCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEe
Confidence 356777763 566788999999999875 55678999999999999887765322 3467899999999988764
Q ss_pred ------------CCCcEEEEECCCCceeeeeccc--CccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeE-----
Q psy17863 75 ------------SDKSVILWEVTTGQPVRRWREH--ASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ----- 135 (341)
Q Consensus 75 ------------~dg~i~iw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----- 135 (341)
.++.+.+|+..+++....+..+ ...+..+.+++++..++++ +.+.+|++.+++.....
T Consensus 108 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 184 (346)
T d1jmxb_ 108 NPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNW 184 (346)
T ss_dssp EEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTC
T ss_pred cCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecCCC
Confidence 4678999999888776555433 3456667777777766543 45788887664411000
Q ss_pred ---EeecC--------------------------CCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCC
Q psy17863 136 ---CCLDS--------------------------KDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR 186 (341)
Q Consensus 136 ---~~~~~--------------------------~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (341)
....+ ....+.++..++.+.+|+..+.......... +...+....+++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 263 (346)
T d1jmxb_ 185 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD-LTELYFTGLRSPKD 263 (346)
T ss_dssp CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE-CSSCEEEEEECSSC
T ss_pred ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeec-ccceeEEEEEeCCC
Confidence 00000 0012233455667888998877665544433 44567888899999
Q ss_pred ceEEEeCCCceEEEEccccc------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccc
Q psy17863 187 KHIMSACGNNVKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSG 252 (341)
Q Consensus 187 ~~~~~~~~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 252 (341)
..++....+.+.+||..... ....+.+++|+|||+++++++.|+.|++||.++++.+.+++.+.+.
T Consensus 264 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g~ 335 (346)
T d1jmxb_ 264 PNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGD 335 (346)
T ss_dssp TTEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred CEEEEecCCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCCC
Confidence 98888888999999987654 4567889999999999999999999999999999999988865543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.87 E-value=4.8e-19 Score=145.11 Aligned_cols=271 Identities=8% Similarity=-0.052 Sum_probs=176.6
Q ss_pred cCcccceeEEEEecCCCEEEEec-----CCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEec----------
Q psy17863 52 GGHAHEVNDATAACDSSQIASGA-----SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS---------- 116 (341)
Q Consensus 52 ~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------- 116 (341)
..+..++..++++||++.+++.. ..+.+.+||..+++.+..+..+..+ .++|+|||++|++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence 35778899999999999987652 3467999999999999988766543 799999999999875
Q ss_pred CCCeEEEEEecCCCCcCeE----------------EeecCCCceE--EEeeccCeEEEEEccCCcceeeeEeeecCceEE
Q psy17863 117 QDNTVMMWDVKSRSHHPIQ----------------CCLDSKDSQI--FCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN 178 (341)
Q Consensus 117 ~d~~i~iwd~~~~~~~~~~----------------~~~~~~~~~~--~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~ 178 (341)
.++.|.+||..+++..... ......+..+ .....++.+.+|+....+..... ....
T Consensus 95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 168 (373)
T d2madh_ 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL------SSPT 168 (373)
T ss_pred cceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe------ccce
Confidence 4578999999987632110 1111112222 22223345555555544332222 2356
Q ss_pred EEEECCCCceEEE--eCCCceEEEEcccccC-------------CCCeEEEEEccCCCEEEEeecCCeEEEEecccccee
Q psy17863 179 SLCSHPTRKHIMS--ACGNNVKLWTAEEDYG-------------QEPIVDACFTRDCQCILTCSTDECLRLFDKATGELL 243 (341)
Q Consensus 179 ~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 243 (341)
.+.++|+++.++. ..++.+.+|+...... ........+++++.+ +..+.++.+.+|+.......
T Consensus 169 ~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~ 247 (373)
T d2madh_ 169 CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGAT 247 (373)
T ss_pred eEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeEE
Confidence 7888999876543 3468899998765431 112334455666654 45567888999998765432
Q ss_pred e--eecCcccce--------eEEEEEeCCCCC----------EEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEE
Q psy17863 244 E--EYKGHKSGD--------FRIECCLDSKDS----------QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLC 303 (341)
Q Consensus 244 ~--~~~~~~~~~--------~~~~~~~~~~~~----------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 303 (341)
. ....+.... .....++++++. .++....++.+.+||..+++.+..+. +...+..++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~---~~~~~~~~a 324 (373)
T d2madh_ 248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS---LGHDVDAIS 324 (373)
T ss_pred EEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec---CCCCeeEEE
Confidence 1 111111111 011124444444 34456667889999999999888875 567789999
Q ss_pred EcCCCcE--EEEeC-CCcEEEEEcccccCCccce
Q psy17863 304 SHPTRKH--IMSAC-GNNVKLWTAEEDYGQAGLS 334 (341)
Q Consensus 304 ~~~~~~~--l~~~~-d~~i~vw~~~~~~~~~~~~ 334 (341)
|+|||+. +++++ |+.|++||+.++...+.+.
T Consensus 325 ~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~ 358 (373)
T d2madh_ 325 VAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV 358 (373)
T ss_pred ECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence 9999984 45677 9999999999887655543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=1e-20 Score=154.13 Aligned_cols=268 Identities=9% Similarity=0.017 Sum_probs=186.9
Q ss_pred eEEEEecCCCEEEEec-----CCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEec----------CCCeEEE
Q psy17863 59 NDATAACDSSQIASGA-----SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS----------QDNTVMM 123 (341)
Q Consensus 59 ~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~i 123 (341)
.-.+.+||++.+++.. .++.|.+||..+++.+.++..+..+ .++|+|||++|++++ .|+.|.+
T Consensus 5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v 82 (355)
T d2bbkh_ 5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEV 82 (355)
T ss_dssp BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence 3345689999987653 4567999999999999988766544 699999999887653 4789999
Q ss_pred EEecCCCCcC----------------eEEeecCCCceEEEe--eccCeEEEEEccCCcceeeeEeeec-----CceEEEE
Q psy17863 124 WDVKSRSHHP----------------IQCCLDSKDSQIFCG--SSDGKIYKWQLVDSSQISTLIHSVG-----KAVVNSL 180 (341)
Q Consensus 124 wd~~~~~~~~----------------~~~~~~~~~~~~~~~--~~~g~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~ 180 (341)
||+.+++... ......+.+..++.. +.+..+.+|+..+.+....+..... ......+
T Consensus 83 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (355)
T d2bbkh_ 83 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 162 (355)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEE
T ss_pred EECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceE
Confidence 9998765211 112334444555544 4567899999998887766543211 1123456
Q ss_pred EECCCCceEEEeCC--CceEEEEccccc--CCCCeEEEEEccCCCEEEEeecCCeEEEEecccccee--eeecCcc----
Q psy17863 181 CSHPTRKHIMSACG--NNVKLWTAEEDY--GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELL--EEYKGHK---- 250 (341)
Q Consensus 181 ~~~~~~~~~~~~~~--~~i~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~---- 250 (341)
.++++++.+..... +.+.+++..... +...+....+.+++..++.++.++.+++|++..++.. .....+.
T Consensus 163 ~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 242 (355)
T d2bbkh_ 163 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAER 242 (355)
T ss_dssp EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHH
T ss_pred EEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceE
Confidence 78888887776543 556666655433 4445666778888888999999999999998876532 2222221
Q ss_pred ------cceeEEEEEeCCCCCEEEEecCC----------CcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCc--EEE
Q psy17863 251 ------SGDFRIECCLDSKDSQIFCGSSD----------GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK--HIM 312 (341)
Q Consensus 251 ------~~~~~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~ 312 (341)
.....+ ++++++..++....+ ..|.+||..+++.+..+. +...+.+++|+|||+ +++
T Consensus 243 ~~~~~p~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~---~~~~~~~~a~spDG~~~l~v 317 (355)
T d2bbkh_ 243 ADGWRPGGWQQV--AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE---MGHEIDSINVSQDEKPLLYA 317 (355)
T ss_dssp HTTEEECSSSCE--EEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE---EEEEECEEEECCSSSCEEEE
T ss_pred eeeeeccceEEE--EEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec---CCCCEEEEEEcCCCCeEEEE
Confidence 111223 678888887765433 469999999999888886 345688999999997 456
Q ss_pred EeC-CCcEEEEEcccccCCccc
Q psy17863 313 SAC-GNNVKLWTAEEDYGQAGL 333 (341)
Q Consensus 313 ~~~-d~~i~vw~~~~~~~~~~~ 333 (341)
++. |+.|++||++++...+.+
T Consensus 318 ~~~~d~~i~v~D~~tg~~~~~i 339 (355)
T d2bbkh_ 318 LSTGDKTLYIHDAESGEELRSV 339 (355)
T ss_dssp EETTTTEEEEEETTTCCEEEEE
T ss_pred EECCCCEEEEEECCCCCEEEEE
Confidence 666 999999999988655544
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=6.5e-19 Score=141.87 Aligned_cols=241 Identities=12% Similarity=0.181 Sum_probs=160.6
Q ss_pred eeCCcEEEEEEccCCCEEEEEe-CCCeEEEEcCCCcceeeEec---CcccceeEEEEecCCCEEEEecC-CCcEEEEECC
Q psy17863 11 CKQGAIRAVRFNVDGSYCLTCG-SDKKIKLWNPYRNLLLKTYG---GHAHEVNDATAACDSSQIASGAS-DKSVILWEVT 85 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw~~~ 85 (341)
.|.+.+..|+|+|||++|++++ .|+.|++|++.......++. .+...+..++|+|||++|++++. ++.+.+|+..
T Consensus 34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~ 113 (333)
T d1ri6a_ 34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLE 113 (333)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccc
Confidence 4889999999999999986555 58999999987654333322 24456778999999999998875 6789999987
Q ss_pred CCceeee--ecccCccEEEEEEcCCCcEEEEecC-CCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 86 TGQPVRR--WREHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 86 ~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
....... ...+...+.++.++|++++++.++. +..+.+|+...........
T Consensus 114 ~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-------------------------- 167 (333)
T d1ri6a_ 114 DGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQD-------------------------- 167 (333)
T ss_dssp TTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEE--------------------------
T ss_pred cccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeee--------------------------
Confidence 7654433 3346667888999999998887764 4567888876543111000
Q ss_pred cceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc-----------------CCCCeEEEEEccCCCEE
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY-----------------GQEPIVDACFTRDCQCI 223 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~-----------------~~~~i~~~~~~~~~~~l 223 (341)
..............+++++++..+.... .+...+++..... .......++++++++++
T Consensus 168 ---~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~ 244 (333)
T d1ri6a_ 168 ---PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 244 (333)
T ss_dssp ---EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred ---ceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCce
Confidence 0000111223356778888887776654 2455666543321 23445678899999876
Q ss_pred EEe-ecCCeEEEEeccccceeeeecC---cccceeEEEEEeCCCCCEEEEec-CCCcEEEEeee
Q psy17863 224 LTC-STDECLRLFDKATGELLEEYKG---HKSGDFRIECCLDSKDSQIFCGS-SDGKIYKWQLV 282 (341)
Q Consensus 224 ~~~-~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~ 282 (341)
+.. ..++.+.+|++........... ....+..+ +|+|||++|++++ .++.|++|++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--a~spDGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 245 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGF--NVDHSGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp EEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCE--EECTTSSEEEEECTTTCEEEEEEEE
T ss_pred eeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEE--EEeCCCCEEEEEECCCCeEEEEEEE
Confidence 654 5567899998876544333322 22233445 8999999877654 56899999664
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.80 E-value=1.1e-18 Score=147.53 Aligned_cols=317 Identities=10% Similarity=0.007 Sum_probs=187.1
Q ss_pred EeeeCCcEEEEEEccCCCEEEEEeC---------CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcE
Q psy17863 9 IDCKQGAIRAVRFNVDGSYCLTCGS---------DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSV 79 (341)
Q Consensus 9 l~~h~~~v~~~~~~~~~~~l~t~~~---------dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 79 (341)
+..|...|.++.|||||++|+.++. ++.+.+||+.+++ +..+..+...+..+.|+|||+++|.. .++.+
T Consensus 57 ~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l 134 (470)
T d2bgra1 57 FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDI 134 (470)
T ss_dssp TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEE
T ss_pred hhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEe-ecccc
Confidence 3455678999999999999998753 5788999998876 45677889999999999999999985 46789
Q ss_pred EEEECCCCceeeeecc------------------cCccEEEEEEcCCCcEEEEecCCCe-EEEEEecCCC---C-cC-eE
Q psy17863 80 ILWEVTTGQPVRRWRE------------------HASKVTCVKFNEDSSVVISGSQDNT-VMMWDVKSRS---H-HP-IQ 135 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~---~-~~-~~ 135 (341)
.+|+..+++..+.... ..+....+.|+|||++|+....|.. +..|.+.... . .. ..
T Consensus 135 ~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~ 214 (470)
T d2bgra1 135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTV 214 (470)
T ss_dssp EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEE
T ss_pred eEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeee
Confidence 9999988876554322 1223456789999999999876543 5555443211 1 11 11
Q ss_pred EeecCCCceEEEeeccCeEEEEEccCCcceeeeEee---------ecCceEEEEEECCCCceEEEeCC---C--ceEEEE
Q psy17863 136 CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS---------VGKAVVNSLCSHPTRKHIMSACG---N--NVKLWT 201 (341)
Q Consensus 136 ~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~---~--~i~~~~ 201 (341)
....+. ......+..+.+|++............ .....+..+.|.++++.++.... + .+.+++
T Consensus 215 ~~~~~~---~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~ 291 (470)
T d2bgra1 215 RVPYPK---AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICD 291 (470)
T ss_dssp EEECCB---TTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEE
T ss_pred eecccc---ccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEE
Confidence 111110 011223456788888776554332211 12234677888888876665421 2 244444
Q ss_pred ccccc----------------------CCCCeEEEEEccCCCEEEEeecCCeEEEE--eccccceeeeecCcccceeEEE
Q psy17863 202 AEEDY----------------------GQEPIVDACFTRDCQCILTCSTDECLRLF--DKATGELLEEYKGHKSGDFRIE 257 (341)
Q Consensus 202 ~~~~~----------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~~~~~~ 257 (341)
+.... +........+.+++.+++....+|..++| +...+ ....+..+...+..+
T Consensus 292 ~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~-~~~~lt~g~~~v~~~- 369 (470)
T d2bgra1 292 YDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK-DCTFITKGTWEVIGI- 369 (470)
T ss_dssp EETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS-CCEESCCSSSCEEEE-
T ss_pred ecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCC-ceeeeccCCeeEEEE-
Confidence 33211 11111122223334445667777765555 54433 334444344445444
Q ss_pred EEeCCCCCEEEEecCCC----cEEEEee--eCCCceEEEE--eeeeccceEEEEEcCCCcEEEEeC----CCcEEEEEcc
Q psy17863 258 CCLDSKDSQIFCGSSDG----KIYKWQL--VDSSQISTLI--HSVGKAVVNSLCSHPTRKHIMSAC----GNNVKLWTAE 325 (341)
Q Consensus 258 ~~~~~~~~~l~~~~~dg----~i~iwd~--~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~----d~~i~vw~~~ 325 (341)
..++.+. ..+++..++ .-.||.+ ..+.....+. ...|...+.+++|||||++++... .-.+.+|+..
T Consensus 370 ~~~d~~~-iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~ 448 (470)
T d2bgra1 370 EALTSDY-LYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (470)
T ss_dssp EEECSSE-EEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred EEECCCE-EEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECC
Confidence 2444332 333443322 2245544 3344444432 125677899999999999977433 3358899888
Q ss_pred cccCCccc
Q psy17863 326 EDYGQAGL 333 (341)
Q Consensus 326 ~~~~~~~~ 333 (341)
++...+.+
T Consensus 449 ~g~~v~~l 456 (470)
T d2bgra1 449 NDKGLRVL 456 (470)
T ss_dssp TTEEEEEE
T ss_pred CCCEEEEE
Confidence 77655544
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.80 E-value=2e-18 Score=141.08 Aligned_cols=283 Identities=9% Similarity=-0.011 Sum_probs=171.8
Q ss_pred eCCcEEEEEEccCCCEEE---EEeCCC--eEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEec----------CC
Q psy17863 12 KQGAIRAVRFNVDGSYCL---TCGSDK--KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA----------SD 76 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~---t~~~dg--~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d 76 (341)
+.++...++..++++... ....++ .+.+||..+++.+..+..+... .++|+|||+.|++.+ .|
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence 445556667778887532 233344 4777799999998888766544 589999999988754 36
Q ss_pred CcEEEEECCCCceeeeecccCc-------cEEEEEEcCCCcEEEEec-CCCeEEEEEecCCCCcCeEEe------ecCCC
Q psy17863 77 KSVILWEVTTGQPVRRWREHAS-------KVTCVKFNEDSSVVISGS-QDNTVMMWDVKSRSHHPIQCC------LDSKD 142 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~------~~~~~ 142 (341)
+.|.+||..+++.+..+..+.. ....++|+|||++|+++. .++.+.+||+.+.+....... .....
T Consensus 96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 175 (368)
T d1mdah_ 96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAA 175 (368)
T ss_dssp EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEET
T ss_pred CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCC
Confidence 7899999999998887754322 224689999999988775 578999999988652111110 01112
Q ss_pred ceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCE
Q psy17863 143 SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQC 222 (341)
Q Consensus 143 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (341)
..++..+.||.+..++............... ...+...+....+.+++..
T Consensus 176 ~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~g~~ 225 (368)
T d1mdah_ 176 ATHYLGSCPASLAASDLAAAPAAAGIVGAQC------------------------------TGAQNCSSQAAQANYPGML 225 (368)
T ss_dssp TEEECCCCTTSCEEEECCSSCCCCEECCCCS------------------------------CTTSCBCSCCEEETTTTEE
T ss_pred ceEEEEcCCCCEEEEEecCCceeeeeeeccc------------------------------ccccccceeecccccCcEE
Confidence 2444455566665555544332211110000 0001223334455556554
Q ss_pred EEEeecCCeEEEEeccccceeee--ecCc----------ccceeEEEEEeCCCCCEEEEecC---------CCcEEEEee
Q psy17863 223 ILTCSTDECLRLFDKATGELLEE--YKGH----------KSGDFRIECCLDSKDSQIFCGSS---------DGKIYKWQL 281 (341)
Q Consensus 223 l~~~~~d~~i~i~d~~~~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~l~~~~~---------dg~i~iwd~ 281 (341)
+... ++.+++++...+..... ...+ ......+ ++++++..++.... ...|.+||.
T Consensus 226 ~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~ 301 (368)
T d1mdah_ 226 VWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMV--AKLKNTDGIMILTVEHSRSCLAAAENTSSVTA 301 (368)
T ss_dssp EECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCE--EEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred EEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeE--EEcCCCCEEEEEecCCCceeecCCceEEEEEC
Confidence 4433 33445555443322111 1110 0111223 67788877665432 235999999
Q ss_pred eCCCceEEEEeeeeccceEEEEEcCCCc-E-EEEeC-CCcEEEEEcccccCCccc
Q psy17863 282 VDSSQISTLIHSVGKAVVNSLCSHPTRK-H-IMSAC-GNNVKLWTAEEDYGQAGL 333 (341)
Q Consensus 282 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~-l~~~~-d~~i~vw~~~~~~~~~~~ 333 (341)
.+++.+..+. ....+.+++|+|||+ + ++++. |+.|++||..++...+.+
T Consensus 302 ~t~~~~~~~~---~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i 353 (368)
T d1mdah_ 302 SVGQTSGPIS---NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp SSCCEEECCE---EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred CCCcEeEEec---CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence 9999888776 345789999999997 3 45666 899999999887655443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.76 E-value=2.2e-17 Score=134.89 Aligned_cols=246 Identities=7% Similarity=-0.030 Sum_probs=155.5
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEe----------CCCeEEEEcCCCcceeeEecCccc-------ceeEEEEecC
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCG----------SDKKIKLWNPYRNLLLKTYGGHAH-------EVNDATAACD 66 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~----------~dg~i~iw~~~~~~~~~~~~~~~~-------~v~~~~~~~~ 66 (341)
+.+.++.++..+ .++|+|||+.|++.+ .|+.|.+||..+++++..+..+.. ....++|+||
T Consensus 57 ~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpD 134 (368)
T d1mdah_ 57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS 134 (368)
T ss_dssp EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred cEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCC
Confidence 455566666554 589999999988754 367899999999998887754332 2346899999
Q ss_pred CCEEEEec-CCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeE----------
Q psy17863 67 SSQIASGA-SDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ---------- 135 (341)
Q Consensus 67 ~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---------- 135 (341)
|++|+++. .++.+.+||+.+++....+..+..... +......++..+.||.+..+++.........
T Consensus 135 Gk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (368)
T d1mdah_ 135 SACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN 211 (368)
T ss_dssp SSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSC
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccc
Confidence 99998776 579999999999998887765543321 1112345566667777777776554321111
Q ss_pred ----EeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc-----
Q psy17863 136 ----CCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY----- 206 (341)
Q Consensus 136 ----~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----- 206 (341)
......+.. +.....+.+.+++....... +++.....
T Consensus 212 ~~~~~~~~~~~g~-~~~~~~~~v~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~ 257 (368)
T d1mdah_ 212 CSSQAAQANYPGM-LVWAVASSILQGDIPAAGAT---------------------------------MKAAIDGNESGRK 257 (368)
T ss_dssp BCSCCEEETTTTE-EEECBSSCCEEEECCSSCCE---------------------------------EECCCCSSCTHHH
T ss_pred cceeecccccCcE-EEEecCCCEEEEeecCCceE---------------------------------EEeecccccceee
Confidence 111111111 12223344444444333222 11111100
Q ss_pred ----CCCCeEEEEEccCCCEEEEeecC---------CeEEEEeccccceeeeecCcccceeEEEEEeCCCCC--EEEEec
Q psy17863 207 ----GQEPIVDACFTRDCQCILTCSTD---------ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDS--QIFCGS 271 (341)
Q Consensus 207 ----~~~~i~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~ 271 (341)
.......++++|++..++....+ ..|.+||..+++.+..+... ..+..+ +++|||+ .++++.
T Consensus 258 ~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~~--a~spDG~~~ly~s~~ 334 (368)
T d1mdah_ 258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAI--IAAQDGASDNYANSA 334 (368)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEE--EECCSSSCEEEEEET
T ss_pred eeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCC-CceeEE--EECCCCCEEEEEEeC
Confidence 01122346677777666544322 35999999999988877633 344555 8999997 346777
Q ss_pred CCCcEEEEeeeCCCceEEEE
Q psy17863 272 SDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 272 ~dg~i~iwd~~~~~~~~~~~ 291 (341)
.++.|++||..+++.+..++
T Consensus 335 ~~~~v~v~D~~tgk~~~~i~ 354 (368)
T d1mdah_ 335 GTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp TTTEEEEEESSSCEEEEECC
T ss_pred CCCeEEEEECCCCCEEEEEE
Confidence 89999999999999998887
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.73 E-value=3.9e-17 Score=132.83 Aligned_cols=297 Identities=7% Similarity=-0.010 Sum_probs=185.5
Q ss_pred EEEEeCCCeEEEEcCCCcceeeEecC------------------------------cccceeEEEEecCCCEEEEe-cCC
Q psy17863 28 CLTCGSDKKIKLWNPYRNLLLKTYGG------------------------------HAHEVNDATAACDSSQIASG-ASD 76 (341)
Q Consensus 28 l~t~~~dg~i~iw~~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~~~-~~d 76 (341)
+++++.+|.|++|++.+++.++++.. |.........+|||++|++. ..+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 56788899999999999988877632 12233444557899998665 467
Q ss_pred CcEEEEECCCCceeeeec-ccCccEEEEEEcCCCc--EEEEecCCC-----------------eEEEEEecCCCC-----
Q psy17863 77 KSVILWEVTTGQPVRRWR-EHASKVTCVKFNEDSS--VVISGSQDN-----------------TVMMWDVKSRSH----- 131 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~l~~~~~d~-----------------~i~iwd~~~~~~----- 131 (341)
+.|.++|+++++....+. .+...+..++|+|+++ +++..+.+. .+..+|..+.+.
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~ 173 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI 173 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence 899999999998877665 3567889999999988 444444332 223455554431
Q ss_pred ---cCeEEeecCCCceEEEeeccC-eEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEccccc-
Q psy17863 132 ---HPIQCCLDSKDSQIFCGSSDG-KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDY- 206 (341)
Q Consensus 132 ---~~~~~~~~~~~~~~~~~~~~g-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 206 (341)
.+......+++..+++.+.+. .+..++..+.+....+.... ......+.|+|+++..+..+.+.++......
T Consensus 174 v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n---~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v 250 (441)
T d1qnia2 174 VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFN---VERIAAAVKAGNFKTIGDSKVPVVDGRGESEF 250 (441)
T ss_dssp ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEE---HHHHHHHHHTTCCBCCTTCCCCEEECSSSCSS
T ss_pred cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCC---ccceEEEecCCCEEEeCCCCcEEEEcccCCce
Confidence 122233334444444444332 22223333333222221111 1123345678887777666666666554432
Q ss_pred -----CCCCeEEEEEccCCCEEE-EeecCCeEEEEecccccee--------eeecCc-ccceeEEEEEeCCCCCEEEEec
Q psy17863 207 -----GQEPIVDACFTRDCQCIL-TCSTDECLRLFDKATGELL--------EEYKGH-KSGDFRIECCLDSKDSQIFCGS 271 (341)
Q Consensus 207 -----~~~~i~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~l~~~~ 271 (341)
.......+.++|||++++ ++..++++.+||+++.+.. ..+.++ ....-.+...|+++|+...+..
T Consensus 251 ~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~ 330 (441)
T d1qnia2 251 TRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLF 330 (441)
T ss_dssp EEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEET
T ss_pred EEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEccc
Confidence 223356789999999875 5778999999998754321 111111 1111234458999998888999
Q ss_pred CCCcEEEEeeeCC----------CceEEEE---eeeeccceEEEEEcCCCcEEEEe---C-CC----------cEEEEEc
Q psy17863 272 SDGKIYKWQLVDS----------SQISTLI---HSVGKAVVNSLCSHPTRKHIMSA---C-GN----------NVKLWTA 324 (341)
Q Consensus 272 ~dg~i~iwd~~~~----------~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~---~-d~----------~i~vw~~ 324 (341)
.|..|..|++... ..+.++. ..+|...+.+.+++|||++|+++ + |. +-++.|+
T Consensus 331 ~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i 410 (441)
T d1qnia2 331 IDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLIDI 410 (441)
T ss_dssp TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCEEEEEEEC
T ss_pred ccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccCcCCCCCCCccceeEEe
Confidence 9999999997521 2233332 23788888888999999999999 4 43 3466676
Q ss_pred ccc
Q psy17863 325 EED 327 (341)
Q Consensus 325 ~~~ 327 (341)
..+
T Consensus 411 ~~~ 413 (441)
T d1qnia2 411 SGE 413 (441)
T ss_dssp SSS
T ss_pred cCC
Confidence 643
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.62 E-value=5.8e-14 Score=118.18 Aligned_cols=109 Identities=13% Similarity=0.092 Sum_probs=89.7
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec-----CcccceeEEEEecCCCEEEEecC---------CCcEEEEE
Q psy17863 18 AVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG-----GHAHEVNDATAACDSSQIASGAS---------DKSVILWE 83 (341)
Q Consensus 18 ~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~iw~ 83 (341)
.+.|.++++++.. .++.+.+||+.+++....+. .|...|.++.|+||+++|+.++. ++.+.+||
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 5789999987764 47889999999998765543 45578999999999999998743 57789999
Q ss_pred CCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCC
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRS 130 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 130 (341)
+.+++. ..+..+...+..+.|+|||+.+|.. .++.+.+|+..++.
T Consensus 99 ~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~ 143 (470)
T d2bgra1 99 LNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP 143 (470)
T ss_dssp TTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred CCCCcc-cccccCCccccccccccCcceeeEe-ecccceEEECCCCc
Confidence 998774 5577788999999999999999986 46789999988765
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.60 E-value=1.6e-14 Score=117.39 Aligned_cols=255 Identities=9% Similarity=-0.010 Sum_probs=170.2
Q ss_pred eeCCcEEEEEEccCCCEEEEEe-CCCeEEEEcCCCcceeeEec-CcccceeEEEEecCCCE--EEEecCCC---------
Q psy17863 11 CKQGAIRAVRFNVDGSYCLTCG-SDKKIKLWNPYRNLLLKTYG-GHAHEVNDATAACDSSQ--IASGASDK--------- 77 (341)
Q Consensus 11 ~h~~~v~~~~~~~~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~--l~~~~~dg--------- 77 (341)
.|........++|||++|++.. .++.|.++|+.+++....+. .+......++|+|+++. ++..+.+.
T Consensus 69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~ 148 (441)
T d1qnia2 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD 148 (441)
T ss_dssp BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence 4556677777889999986654 58899999999998877665 35678899999999984 44444332
Q ss_pred --------cEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCC-eEEEEEecCCCCcCeEEe-------ecCC
Q psy17863 78 --------SVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN-TVMMWDVKSRSHHPIQCC-------LDSK 141 (341)
Q Consensus 78 --------~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~-------~~~~ 141 (341)
.+..+|..+.+...++... .....+.++|+|+++++.+.+. .+..++..+......... ...+
T Consensus 149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~ 227 (441)
T d1qnia2 149 FSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVK 227 (441)
T ss_dssp CCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHH
T ss_pred cccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEec
Confidence 2355788887777766543 4567899999999999887653 233333333221111111 0112
Q ss_pred CceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc-------------
Q psy17863 142 DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY------------- 206 (341)
Q Consensus 142 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~------------- 206 (341)
++..+..+.++.+.+++....+....+... .....+.++|+|+++++++ ++++.+||+++-.
T Consensus 228 dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg---ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~ 304 (441)
T d1qnia2 228 AGNFKTIGDSKVPVVDGRGESEFTRYIPVP---KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTI 304 (441)
T ss_dssp TTCCBCCTTCCCCEEECSSSCSSEEEECCB---SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGE
T ss_pred CCCEEEeCCCCcEEEEcccCCceEEEEeCC---CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEE
Confidence 222333345667777776665555554432 2367899999999998876 4899999987622
Q ss_pred -----CCCCeEEEEEccCCCEEEEeecCCeEEEEecccc----------ceeeee-----cCcccceeEEEEEeCCCCCE
Q psy17863 207 -----GQEPIVDACFTRDCQCILTCSTDECLRLFDKATG----------ELLEEY-----KGHKSGDFRIECCLDSKDSQ 266 (341)
Q Consensus 207 -----~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 266 (341)
..-.....+|+++|..+.+...|..|..|++... ..+..+ .+|...+... +++|+|++
T Consensus 305 ~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~--t~~pdGk~ 382 (441)
T d1qnia2 305 VAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTE--SRDADGKW 382 (441)
T ss_dssp EECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTT--STTCCCCE
T ss_pred EeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCcccccc--ccCCCCcE
Confidence 1112344689999998889999999999997521 123333 3555444444 68999999
Q ss_pred EEEec
Q psy17863 267 IFCGS 271 (341)
Q Consensus 267 l~~~~ 271 (341)
|++++
T Consensus 383 l~s~~ 387 (441)
T d1qnia2 383 LVVLS 387 (441)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 99994
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.58 E-value=6.8e-12 Score=101.42 Aligned_cols=279 Identities=10% Similarity=0.052 Sum_probs=161.4
Q ss_pred EEEEeC--CCeEEEE--cCCCcce--eeEe-cCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeec--ccCc
Q psy17863 28 CLTCGS--DKKIKLW--NPYRNLL--LKTY-GGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR--EHAS 98 (341)
Q Consensus 28 l~t~~~--dg~i~iw--~~~~~~~--~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~ 98 (341)
|+.|+. .+.|..+ |.+++++ +... ......+.-|+|+|++++|.++.. +.+..|.+.....+.... ....
T Consensus 5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~ 83 (365)
T d1jofa_ 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGG 83 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCS
T ss_pred EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCC
Confidence 455543 4456554 4444432 2221 124455678999999999988765 567888776432222221 1223
Q ss_pred cEEEEEEcCCCcEEE--Eec-CCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeee---Eeee
Q psy17863 99 KVTCVKFNEDSSVVI--SGS-QDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTL---IHSV 172 (341)
Q Consensus 99 ~v~~~~~~~~~~~l~--~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~---~~~~ 172 (341)
....+.++++++.++ ++. ..+.+..+.+.... +...++.+......... ....
T Consensus 84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~q 142 (365)
T d1jofa_ 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA---------------------GYGNVFSVSETGKLEKNVQNYEYQ 142 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC---------------------CEEEEEEECTTCCEEEEEEEEECC
T ss_pred CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCC---------------------CcceeEeeeecceecCcccCcccC
Confidence 345677888887443 332 23555554443211 12222222211111111 1111
Q ss_pred cCceEEEEEECCCCceEEEeCC--CceEEEEccccc------------CCCCeEEEEEccCCCEEEEee-cCCeEEEEec
Q psy17863 173 GKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEEDY------------GQEPIVDACFTRDCQCILTCS-TDECLRLFDK 237 (341)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~------------~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~ 237 (341)
....+.++.++|+++++++... +.+.+|+..... .......++|+|+++++++.. .++.|.+|+.
T Consensus 143 ~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~ 222 (365)
T d1jofa_ 143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI 222 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEe
Confidence 2345789999999998888764 567777754322 345678899999999886555 5788999998
Q ss_pred cccceeeeec-----------------CcccceeEEEEEeCCCCCEEEEecC------CCcEEEEeeeCCCceEEEEe--
Q psy17863 238 ATGELLEEYK-----------------GHKSGDFRIECCLDSKDSQIFCGSS------DGKIYKWQLVDSSQISTLIH-- 292 (341)
Q Consensus 238 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~-- 292 (341)
..++...... ..........+.++|+|++|+++.. .+.|..|++.....+.....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~ 302 (365)
T d1jofa_ 223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS 302 (365)
T ss_dssp CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred cCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEee
Confidence 7654321111 0011122334489999999887632 23477777765443332221
Q ss_pred --eeeccceEEEEEcC-CCcEEEEeC--CCcEEEEEccccc
Q psy17863 293 --SVGKAVVNSLCSHP-TRKHIMSAC--GNNVKLWTAEEDY 328 (341)
Q Consensus 293 --~~~~~~v~~~~~~~-~~~~l~~~~--d~~i~vw~~~~~~ 328 (341)
.........++++| +|++|+++. ++.|.+|+++.+.
T Consensus 303 ~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 303 PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred EEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 11234567799998 899888886 8999999987653
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.49 E-value=5.2e-10 Score=86.69 Aligned_cols=239 Identities=12% Similarity=0.190 Sum_probs=151.9
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCc------ccceeEEEEecCC-CEEEE-ecCCCcEEEEECCC
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGH------AHEVNDATAACDS-SQIAS-GASDKSVILWEVTT 86 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~-~~~dg~i~iw~~~~ 86 (341)
.-..++++++|+++++-..++.|++||. +++.+..+... ...-..+++.++. ..+++ .+.++.|..++. .
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence 4689999999998888777889999996 46666665321 1123445555543 33333 344567777774 4
Q ss_pred Cceeeeec-ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcce
Q psy17863 87 GQPVRRWR-EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQI 165 (341)
Q Consensus 87 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~ 165 (341)
++....+. ........+++.+++.++++....+.+.+++.... .+..+..
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~-----------------------~~~~~g~------ 152 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-----------------------VLHKFGC------ 152 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-----------------------EEEEEEC------
T ss_pred ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc-----------------------eeecccc------
Confidence 55555553 23445677788777776666655555555442210 0000000
Q ss_pred eeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeee
Q psy17863 166 STLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEE 245 (341)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 245 (341)
..+......+++.++++.+++....+.|++||.. ++.+.+
T Consensus 153 ---------------------------------------~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~ 192 (279)
T d1q7fa_ 153 ---------------------------------------SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQ 192 (279)
T ss_dssp ---------------------------------------TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEE
T ss_pred ---------------------------------------cccccccceeeeccceeEEeeeccccceeeeecC-Cceeee
Confidence 0112345566677777777777778888888864 566666
Q ss_pred ec--CcccceeEEEEEeCCCCCEEEEecC-CCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeCCCcEEEE
Q psy17863 246 YK--GHKSGDFRIECCLDSKDSQIFCGSS-DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLW 322 (341)
Q Consensus 246 ~~--~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~vw 322 (341)
+. +.......+ +++++|+.+++-.. ++.|.+|+ .+|+.+..+...........+++.|+|.++++..+++|++|
T Consensus 193 ~g~~g~~~~P~gi--avD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~f 269 (279)
T d1q7fa_ 193 IGGEGITNYPIGV--GINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIY 269 (279)
T ss_dssp ESCTTTSCSEEEE--EECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEE
T ss_pred ecccccccCCccc--ccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEE
Confidence 53 222333444 89999997777543 45799998 67888877764333456789999999986665448999999
Q ss_pred Ecccc
Q psy17863 323 TAEED 327 (341)
Q Consensus 323 ~~~~~ 327 (341)
+....
T Consensus 270 r~~~~ 274 (279)
T d1q7fa_ 270 RYVQL 274 (279)
T ss_dssp ECSCC
T ss_pred Eeeee
Confidence 98764
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.49 E-value=4.7e-11 Score=93.89 Aligned_cols=223 Identities=11% Similarity=0.069 Sum_probs=151.7
Q ss_pred eeeeEEeeeCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 4 TCVQTIDCKQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 4 ~~~~~l~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
+.+.++... ..+..++++|||+++++...+++|..|+... + ...+......+.+++|.++|+++++...++.+..++
T Consensus 19 ~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~ 95 (302)
T d2p4oa1 19 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVS 95 (302)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred cEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEE
Confidence 334444422 2578999999999999999999999998653 3 334444667899999999999999888888888887
Q ss_pred CCCCce-eeee--cccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCc------------------CeEEeecCCC
Q psy17863 84 VTTGQP-VRRW--REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHH------------------PIQCCLDSKD 142 (341)
Q Consensus 84 ~~~~~~-~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------------------~~~~~~~~~~ 142 (341)
...... ...+ .........+++.++++++++.+.++.+..++...+... ....+....+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~ 175 (302)
T d2p4oa1 96 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN 175 (302)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT
T ss_pred ecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC
Confidence 654322 1111 123456789999999999998888888888876654210 1111122234
Q ss_pred ceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC-CCceEEEEccccc--------CCCCeEE
Q psy17863 143 SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDY--------GQEPIVD 213 (341)
Q Consensus 143 ~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~--------~~~~i~~ 213 (341)
...++.+..+.|..++.....................+++.++|.+.++.. ++.|..++..... .-...++
T Consensus 176 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~ 255 (302)
T d2p4oa1 176 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTA 255 (302)
T ss_dssp EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEE
T ss_pred ceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceE
Confidence 466677788888888887655444333323334467899999998777664 4778888765432 2345788
Q ss_pred EEE---ccCCCEEEEeecC
Q psy17863 214 ACF---TRDCQCILTCSTD 229 (341)
Q Consensus 214 ~~~---~~~~~~l~~~~~d 229 (341)
++| ++|++.|++++..
T Consensus 256 vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 256 VAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EEECCSTTTTTEEEEEECT
T ss_pred EEEcCCCCCCCEEEEECCC
Confidence 899 6677877766544
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.44 E-value=1.4e-10 Score=89.06 Aligned_cols=238 Identities=11% Similarity=0.063 Sum_probs=143.5
Q ss_pred cEEEEEEccCCCEEEEE-eCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeee
Q psy17863 15 AIRAVRFNVDGSYCLTC-GSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW 93 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 93 (341)
.-..+++.++|+..++. +..+.+..++............-......++++++++++++....+.+++++-.+...+...
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~ 94 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF 94 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee
Confidence 45799999999976654 45577887775543322222222234577899999988877777777776665555544433
Q ss_pred cccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeec
Q psy17863 94 REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVG 173 (341)
Q Consensus 94 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 173 (341)
.. .....++++.++++++++-..+..+..++..... . ... ...
T Consensus 95 ~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~---------------------------------~-~~~-~~~- 137 (260)
T d1rwia_ 95 DG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT---------------------------------Q-TVL-PFT- 137 (260)
T ss_dssp CS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSS---------------------------------C-EEC-CCC-
T ss_pred ee-eeecccccccccceeEeeccccccccccccccce---------------------------------e-eee-eec-
Confidence 32 3456788998888776665544444444432211 0 000 000
Q ss_pred CceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeecCcccce
Q psy17863 174 KAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGD 253 (341)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 253 (341)
.......++++++++.+++...++.|..++.............-...
T Consensus 138 ---------------------------------~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p 184 (260)
T d1rwia_ 138 ---------------------------------GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAP 184 (260)
T ss_dssp ---------------------------------SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSE
T ss_pred ---------------------------------ccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCC
Confidence 01123456777888877777778888888876443322222222333
Q ss_pred eEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEccc
Q psy17863 254 FRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEE 326 (341)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~ 326 (341)
..+ +++++|+++++....+.|..++... .....+.. ..-.....|+++++|.++++-. +++|+.++..+
T Consensus 185 ~gi--~~d~~g~l~vsd~~~~~i~~~~~~~-~~~~~~~~-~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~ 254 (260)
T d1rwia_ 185 WGI--AVDEAGTVYVTEHNTNQVVKLLAGS-TTSTVLPF-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 254 (260)
T ss_dssp EEE--EECTTCCEEEEETTTTEEEEECTTC-SCCEECCC-CSCCCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred ccc--eeeeeeeeeeeecCCCEEEEEeCCC-CeEEEEcc-CCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence 444 8899998888888888888887533 33333321 2234578999999998877766 77776655444
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.42 E-value=4.4e-10 Score=88.19 Aligned_cols=232 Identities=7% Similarity=-0.007 Sum_probs=142.1
Q ss_pred cceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEE
Q psy17863 45 NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMW 124 (341)
Q Consensus 45 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 124 (341)
.+.+..+... ..+..+++.|||+++++...+++|..|+.. ++ ...+......+.+++|.++|+++++...++.+..+
T Consensus 18 ~~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~ 94 (302)
T d2p4oa1 18 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVV 94 (302)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred ccEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEE
Confidence 3444555432 257889999999999999999999888854 33 33444566789999999999988888888888887
Q ss_pred EecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-CceEEEEcc
Q psy17863 125 DVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-NNVKLWTAE 203 (341)
Q Consensus 125 d~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~ 203 (341)
+............ ........+.+++.++++++++... +.+..++..
T Consensus 95 ~~~~~~~~~~~~~--------------------------------~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~ 142 (302)
T d2p4oa1 95 SLVKSDGTVETLL--------------------------------TLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV 142 (302)
T ss_dssp EEECTTSCEEEEE--------------------------------ECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred Eecccccceeecc--------------------------------ccCCccccceeEEccCCCEEeeccccccceeeecc
Confidence 7655331111111 1112233566677777766665443 344444333
Q ss_pred ccc-----------------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeec--CcccceeEEEEEeCCCC
Q psy17863 204 EDY-----------------GQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK--GHKSGDFRIECCLDSKD 264 (341)
Q Consensus 204 ~~~-----------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 264 (341)
... .......+.++. +.++++.+..+.|+.++........... ........+ +++++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgi--a~d~dG 219 (302)
T d2p4oa1 143 QPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDF--AFDVEG 219 (302)
T ss_dssp TTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSE--EEBTTC
T ss_pred CCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcce--EECCCC
Confidence 211 112344555543 3455566678888888876543322211 111122334 899999
Q ss_pred CEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEE---cCCCcEEEEeC
Q psy17863 265 SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCS---HPTRKHIMSAC 315 (341)
Q Consensus 265 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~ 315 (341)
++.++...++.|..++. +++..........-...++++| ++|++.|..++
T Consensus 220 ~l~va~~~~~~V~~i~p-~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt 272 (302)
T d2p4oa1 220 NLYGATHIYNSVVRIAP-DRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 272 (302)
T ss_dssp CEEEECBTTCCEEEECT-TCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred CEEEEEcCCCcEEEECC-CCCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEEC
Confidence 98888888999999874 4443333321123346889999 67888776654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.40 E-value=1.5e-09 Score=85.35 Aligned_cols=256 Identities=8% Similarity=0.044 Sum_probs=142.5
Q ss_pred ceeEEEEecCCCEEEEecC-------CCcEEEEECCCCceeeeecc----cCccEEEEEEcCCCcEEEEecCCCeEEEEE
Q psy17863 57 EVNDATAACDSSQIASGAS-------DKSVILWEVTTGQPVRRWRE----HASKVTCVKFNEDSSVVISGSQDNTVMMWD 125 (341)
Q Consensus 57 ~v~~~~~~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 125 (341)
....++|.++|+++++... +|+|..||..+++....... ....-..++|.++++.++++...+.+..++
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~ 98 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ 98 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence 4566789999998776433 46788999887765433221 122356899999998888887777788888
Q ss_pred ecCCCCcCeEEeecCC---CceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEc
Q psy17863 126 VKSRSHHPIQCCLDSK---DSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTA 202 (341)
Q Consensus 126 ~~~~~~~~~~~~~~~~---~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 202 (341)
................ ...-++...+|.+.+=|..................-.-..+.++++......
T Consensus 99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~--------- 169 (314)
T d1pjxa_ 99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDT--------- 169 (314)
T ss_dssp TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEE---------
T ss_pred CCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeC---------
Confidence 6653211100000000 0011223344555544432111000000000000001112233332221110
Q ss_pred ccccCCCCeEEEEEccCCC-----EEEEeecCCeEEEEeccccceee------eecCc-ccceeEEEEEeCCCCCEEEEe
Q psy17863 203 EEDYGQEPIVDACFTRDCQ-----CILTCSTDECLRLFDKATGELLE------EYKGH-KSGDFRIECCLDSKDSQIFCG 270 (341)
Q Consensus 203 ~~~~~~~~i~~~~~~~~~~-----~l~~~~~d~~i~i~d~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~l~~~ 270 (341)
....-+.++|+|+++ ++++-+..+.|..|++.....+. .+.+. ......+ +++.+|++.++.
T Consensus 170 ----~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGi--avD~~GnlyVa~ 243 (314)
T d1pjxa_ 170 ----AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM--DFDEDNNLLVAN 243 (314)
T ss_dssp ----EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE--EEBTTCCEEEEE
T ss_pred ----CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceee--EEecCCcEEEEE
Confidence 012235678888764 44555677889998875432221 22221 1122334 788999988887
Q ss_pred cCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEE-EEeC-CCcEEEEEcccccC
Q psy17863 271 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHI-MSAC-GNNVKLWTAEEDYG 329 (341)
Q Consensus 271 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~-d~~i~vw~~~~~~~ 329 (341)
...+.|.+||...++.+..+. ......++++|.||++.| ++.+ +++|...++.....
T Consensus 244 ~~~g~I~~~dp~~g~~~~~i~--~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~ 302 (314)
T d1pjxa_ 244 WGSSHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGK 302 (314)
T ss_dssp ETTTEEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBC
T ss_pred cCCCEEEEEeCCCCEEEEEEE--CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCCh
Confidence 788999999987777777776 445678999999999744 5555 78888888765443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.38 E-value=4.8e-10 Score=90.38 Aligned_cols=240 Identities=9% Similarity=0.031 Sum_probs=138.4
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEec--CcccceeEEEEecCCCEE--EEec-CCCcEEEEECCC
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYG--GHAHEVNDATAACDSSQI--ASGA-SDKSVILWEVTT 86 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l--~~~~-~dg~i~iw~~~~ 86 (341)
....+..|+|+|++++|.++.. +.+..|.+.....+.... ........+.++++++.+ +++. ..+++..+.+..
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence 4455678999999999988764 567777665322222221 122334567788888743 3332 245565554322
Q ss_pred C-cee------------e---e-ecccCccEEEEEEcCCCcEEEEecC-CCeEEEEEecCCCCcCeEEeecCCCceEEEe
Q psy17863 87 G-QPV------------R---R-WREHASKVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCG 148 (341)
Q Consensus 87 ~-~~~------------~---~-~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 148 (341)
. ... . . -......+.++.|+|+|+++++++. ...|.+|+.....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g------------------ 178 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASG------------------ 178 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS------------------
T ss_pred CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCC------------------
Confidence 1 100 0 0 0112234678999999998887754 3466666654321
Q ss_pred eccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEcccccC-------------------
Q psy17863 149 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDYG------------------- 207 (341)
Q Consensus 149 ~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~------------------- 207 (341)
.+. ................++++|+++++.+.. ++.|.+|+......
T Consensus 179 ----~~~--------~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (365)
T d1jofa_ 179 ----EVE--------LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDR 246 (365)
T ss_dssp ----CEE--------EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCB
T ss_pred ----cee--------eccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccccccc
Confidence 000 001111111234578899999999887766 37888888765321
Q ss_pred -------CCCeEEEEEccCCCEEEEeec------CCeEEEEeccccceeeee------cCcccceeEEEEEeCC-CCCEE
Q psy17863 208 -------QEPIVDACFTRDCQCILTCST------DECLRLFDKATGELLEEY------KGHKSGDFRIECCLDS-KDSQI 267 (341)
Q Consensus 208 -------~~~i~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~l 267 (341)
......+.++|+|++|+++.. .+.|..|++.....+... .........+ +++| +|++|
T Consensus 247 ~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i--~~~p~~G~~l 324 (365)
T d1jofa_ 247 DPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAV--SPCPWSDEWM 324 (365)
T ss_dssp CTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCE--EECTTCTTEE
T ss_pred ccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEE--EecCCCCCEE
Confidence 112457899999999988753 223777776532222111 1111222334 7887 78877
Q ss_pred EEe-cCCCcEEEEeeeCC
Q psy17863 268 FCG-SSDGKIYKWQLVDS 284 (341)
Q Consensus 268 ~~~-~~dg~i~iwd~~~~ 284 (341)
+++ ..++.|.+|++...
T Consensus 325 ~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 325 AITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEECSSSCEEEEEEEETT
T ss_pred EEEeCCCCeEEEEEEeCC
Confidence 655 57799999997654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.37 E-value=4.5e-09 Score=82.63 Aligned_cols=246 Identities=8% Similarity=0.064 Sum_probs=147.4
Q ss_pred CcEEEEEEccCCCEEEEEeC-------CCeEEEEcCCCcceeeEecC----cccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 14 GAIRAVRFNVDGSYCLTCGS-------DKKIKLWNPYRNLLLKTYGG----HAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~-------dg~i~iw~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
.....++|.|+|+++++... +|.|..||..++........ ....-..++|.++++.++++...+.+...
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence 44677899999998776433 46799999887765433321 12235679999999988888777778888
Q ss_pred ECCCCceeeeecccC----ccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEE
Q psy17863 83 EVTTGQPVRRWREHA----SKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQ 158 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d 158 (341)
+.+.+.......... .....+++.++|++.++-.. +....++..... .. ..|.+..++
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~-~~~~~~~~~~~~--------~~---------~~G~v~~~~ 159 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPA-GEVAPADYTRSM--------QE---------KFGSIYCFT 159 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECB-CBCTTSCCCBTT--------SS---------SCEEEEEEC
T ss_pred eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCc-cCccccccccee--------cc---------CCceEEEEe
Confidence 876543322111111 12467888888876665322 111111111100 01 122333332
Q ss_pred ccCCcceeeeEeeecCceEEEEEECCCCc----eEEEeC--CCceEEEEccccc--------------CCCCeEEEEEcc
Q psy17863 159 LVDSSQISTLIHSVGKAVVNSLCSHPTRK----HIMSAC--GNNVKLWTAEEDY--------------GQEPIVDACFTR 218 (341)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~i~~~~~~~~~--------------~~~~i~~~~~~~ 218 (341)
... + ...... .....+.++++|++. .+.++. .+.|..|++.... .......+++.+
T Consensus 160 ~dg-~-~~~~~~--~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~ 235 (314)
T d1pjxa_ 160 TDG-Q-MIQVDT--AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE 235 (314)
T ss_dssp TTS-C-EEEEEE--EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT
T ss_pred ecC-c-eeEeeC--CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec
Confidence 211 1 111111 112356788877654 344432 3667777654321 112345789999
Q ss_pred CCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCE-EEEecCCCcEEEEeeeC
Q psy17863 219 DCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQ-IFCGSSDGKIYKWQLVD 283 (341)
Q Consensus 219 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~ 283 (341)
+|++.++....+.|.+||.+.++.+..+..+......+ +|.++++. +++.+.+|.|...++..
T Consensus 236 ~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~--afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 236 DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNL--HFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEE--EECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEE--EEeCCCCEEEEEECCCCcEEEEECCC
Confidence 99988888888999999998888777776655555555 88998874 56667778888877643
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=4.6e-09 Score=80.76 Aligned_cols=229 Identities=12% Similarity=0.052 Sum_probs=127.5
Q ss_pred eEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCC---CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEE
Q psy17863 36 KIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD---KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVV 112 (341)
Q Consensus 36 ~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 112 (341)
.|.|.|.. |.....+..+...+...+|||||+.||..... ..+.+.+...+... .+..+........|+|+++.+
T Consensus 20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i 97 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKL 97 (269)
T ss_dssp EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEE
T ss_pred EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCee
Confidence 57777765 44444454567778899999999999876443 34666676655543 444567788899999999988
Q ss_pred EEecC-CCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEE
Q psy17863 113 ISGSQ-DNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMS 191 (341)
Q Consensus 113 ~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (341)
+.... ++...++............. ..........+++++..+..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~ 143 (269)
T d2hqsa1 98 AFALSKTGSLNLYVMDLASGQIRQVT----------------------------------DGRSNNTEPTWFPDSQNLAF 143 (269)
T ss_dssp EEEECTTSSCEEEEEETTTCCEEECC----------------------------------CCSSCEEEEEECTTSSEEEE
T ss_pred eEeeecCCccceeecccccccceeee----------------------------------ecccccccccccccccccee
Confidence 76543 22222222222111000000 01111122223333332222
Q ss_pred eC--CCc--eEEEEccccc------CCCCeEEEEEccCCCEEEEeecCC---eEEEEeccccceeeeecCcccceeEEEE
Q psy17863 192 AC--GNN--VKLWTAEEDY------GQEPIVDACFTRDCQCILTCSTDE---CLRLFDKATGELLEEYKGHKSGDFRIEC 258 (341)
Q Consensus 192 ~~--~~~--i~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 258 (341)
.. ++. +...+..... .........++|+++.++..+.++ .+.+.+...+.. ............
T Consensus 144 ~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p-- 219 (269)
T d2hqsa1 144 TSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETP-- 219 (269)
T ss_dssp EECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEE--
T ss_pred cccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccce--
Confidence 21 122 2222222211 234456678889888887765544 344555544433 222233334444
Q ss_pred EeCCCCCEEEEecC---CCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCC
Q psy17863 259 CLDSKDSQIFCGSS---DGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPT 307 (341)
Q Consensus 259 ~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (341)
.|+|||+.|+-.+. ...|+++++..+. ...+. ...+.+...+|||-
T Consensus 220 ~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-~~~lt--~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 220 SLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLP--ATDGQVKFPAWSPY 268 (269)
T ss_dssp EECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECC--CSSSEEEEEEECCC
T ss_pred EECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEEe--CCCCcEEeEEeCCC
Confidence 79999999875443 4568899986554 45555 45667888999983
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.28 E-value=4.3e-08 Score=77.13 Aligned_cols=237 Identities=10% Similarity=0.124 Sum_probs=138.9
Q ss_pred ccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCC--CeEEEEEecCCCCc
Q psy17863 55 AHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQD--NTVMMWDVKSRSHH 132 (341)
Q Consensus 55 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~ 132 (341)
...+..++|.++|++.++-...+.|..|+.+.++....+.........+++.++|+++++...+ ....++.+......
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~ 118 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN 118 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence 3345789999999988887788999999987776655555556677899999999877765432 22223322221111
Q ss_pred CeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC-------CceEEEEcccc
Q psy17863 133 PIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG-------NNVKLWTAEED 205 (341)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~i~~~~~~~~ 205 (341)
...... ........+.+++.++|.+.++... +.+..++.+..
T Consensus 119 ~~~~~~-------------------------------~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~ 167 (319)
T d2dg1a1 119 LQDIIE-------------------------------DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR 167 (319)
T ss_dssp CEEEEC-------------------------------SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC
T ss_pred eeeecc-------------------------------CCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc
Confidence 111110 0001122444555555554444321 11222221111
Q ss_pred c------CCCCeEEEEEccCCCEE-EEeecCCeEEEEecccc-ceeee--------ecCcccceeEEEEEeCCCCCEEEE
Q psy17863 206 Y------GQEPIVDACFTRDCQCI-LTCSTDECLRLFDKATG-ELLEE--------YKGHKSGDFRIECCLDSKDSQIFC 269 (341)
Q Consensus 206 ~------~~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~ 269 (341)
. .-.....++|+|+++.| ++-+..+.|+.|++... ..... ..+.. ....+ +++.+|++.++
T Consensus 168 ~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~-~PdGl--~vD~~G~l~Va 244 (319)
T d2dg1a1 168 TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHE-GPDSC--CIDSDDNLYVA 244 (319)
T ss_dssp CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSS-EEEEE--EEBTTCCEEEE
T ss_pred eeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCcc-ceeee--eEcCCCCEEEE
Confidence 0 11234568999999866 45556789999987532 11111 11111 12234 88999998888
Q ss_pred ecCCCcEEEEeeeCCCceEEEEeee----eccceEEEEEcCCCcEEEEeC-C----CcEEEEEccc
Q psy17863 270 GSSDGKIYKWQLVDSSQISTLIHSV----GKAVVNSLCSHPTRKHIMSAC-G----NNVKLWTAEE 326 (341)
Q Consensus 270 ~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~-d----~~i~vw~~~~ 326 (341)
....+.|.+++ .+|+.+..+.... +...+++++|.+++..+++.. + +.-.+|.++.
T Consensus 245 ~~~~g~V~~~~-p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~ 309 (319)
T d2dg1a1 245 MYGQGRVLVFN-KRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 309 (319)
T ss_dssp EETTTEEEEEC-TTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred EcCCCEEEEEC-CCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence 88899999999 5888888876321 233578999999877665543 2 3344555543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=6.7e-10 Score=92.30 Aligned_cols=312 Identities=9% Similarity=0.035 Sum_probs=172.4
Q ss_pred cEEEEEEccCCCEEEEEe---------CCCeEEEEcCCCcceeeEe--cCcccceeEEEEecCCCEEEEecCCCcEEEEE
Q psy17863 15 AIRAVRFNVDGSYCLTCG---------SDKKIKLWNPYRNLLLKTY--GGHAHEVNDATAACDSSQIASGASDKSVILWE 83 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~---------~dg~i~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~ 83 (341)
.+....||||+++++... ..+.+.++|+.++...... ......+....|+|||+.||-.. ++.|.+.+
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~ 140 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA 140 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence 567788999999988764 3578899999887653322 22344566789999999998765 56788888
Q ss_pred CCCCceeeeecc-cCc-----------------cEEEEEEcCCCcEEEEecC-CCeEEEEEecCCC---CcCeEEeecCC
Q psy17863 84 VTTGQPVRRWRE-HAS-----------------KVTCVKFNEDSSVVISGSQ-DNTVMMWDVKSRS---HHPIQCCLDSK 141 (341)
Q Consensus 84 ~~~~~~~~~~~~-~~~-----------------~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~---~~~~~~~~~~~ 141 (341)
...+..++.... ... .-..+.|||||++||.... +..+..+.+.... .........+.
T Consensus 141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~ 220 (465)
T d1xfda1 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (465)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccc
Confidence 877665543321 111 1246789999999998754 3445555543211 11111111111
Q ss_pred CceEEEeeccCeEEEEEccCCcceeeeEe----eecCceEEEEEECCCCceEEEeCC-----CceEEEEccccc------
Q psy17863 142 DSQIFCGSSDGKIYKWQLVDSSQISTLIH----SVGKAVVNSLCSHPTRKHIMSACG-----NNVKLWTAEEDY------ 206 (341)
Q Consensus 142 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~------ 206 (341)
.+. ......+.++|+..+........ ......+..+.|.|+++.++...+ ..+.++|.....
T Consensus 221 ~G~---~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~ 297 (465)
T d1xfda1 221 AGS---ENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE 297 (465)
T ss_dssp TTS---CCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred cCC---CCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEE
Confidence 100 01123577888766543322211 112234778899999987766543 246666665432
Q ss_pred --CCC----CeEEEEEccCCCEEE---EeecCC--eEEEEecc------ccceeeeecCcccceeEEEEEeCCCCCEEE-
Q psy17863 207 --GQE----PIVDACFTRDCQCIL---TCSTDE--CLRLFDKA------TGELLEEYKGHKSGDFRIECCLDSKDSQIF- 268 (341)
Q Consensus 207 --~~~----~i~~~~~~~~~~~l~---~~~~d~--~i~i~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 268 (341)
... .-....|+|+|+.++ ..-.+| .++.+.+. .++.+..+....-.|..+ ..++.+++.++
T Consensus 298 e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i-~~~d~~~~~vyF 376 (465)
T d1xfda1 298 DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKI-LAYDEKGNKIYF 376 (465)
T ss_dssp EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEE-EEEETTTTEEEE
T ss_pred EcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEE-EEEcCCCCEEEE
Confidence 111 123457888987543 222232 34444332 233334444333334443 25777776654
Q ss_pred EecCC--CcEEEEeee--CCCceEEEE-eeeeccceEEEEEcCCCcEEEEeC-C---CcEEEEEcccccCCc
Q psy17863 269 CGSSD--GKIYKWQLV--DSSQISTLI-HSVGKAVVNSLCSHPTRKHIMSAC-G---NNVKLWTAEEDYGQA 331 (341)
Q Consensus 269 ~~~~d--g~i~iwd~~--~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~-d---~~i~vw~~~~~~~~~ 331 (341)
++..+ +.-.+|.+. .+.....+. .........++.|||++++++... . -.+.+++..++....
T Consensus 377 ~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~ 448 (465)
T d1xfda1 377 LSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMF 448 (465)
T ss_dssp EESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEE
T ss_pred EEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEE
Confidence 44433 233455443 222222221 012345677899999999988655 2 357777766554433
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=3.4e-08 Score=75.74 Aligned_cols=219 Identities=9% Similarity=0.017 Sum_probs=125.8
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeCC---CeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC-CCc--
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGSD---KKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS-DKS-- 78 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~d---g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~-- 78 (341)
-.+.+..+...+...+|||||+.||-.... ..+.+.+...+.. ..+..+.+......|+|+++.++.... ++.
T Consensus 30 ~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~ 108 (269)
T d2hqsa1 30 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLN 108 (269)
T ss_dssp SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred CcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccc
Confidence 344566678889999999999999976543 2466667655554 445557788889999999998886543 332
Q ss_pred EEEEECCCCceeeeecccCccEEEEEEcCCCcEEE-EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEE
Q psy17863 79 VILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKW 157 (341)
Q Consensus 79 i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~ 157 (341)
+..+........... ..........+++++..++ +...++...+|....
T Consensus 109 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~----------------------------- 158 (269)
T d2hqsa1 109 LYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI----------------------------- 158 (269)
T ss_dssp EEEEETTTCCEEECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET-----------------------------
T ss_pred eeecccccccceeee-eccccccccccccccccceecccccCCceEeeeec-----------------------------
Confidence 233333322322222 2333444555666555443 333444433333221
Q ss_pred EccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC--CceEEEEcccc--c-----CCCCeEEEEEccCCCEEEEeec
Q psy17863 158 QLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEED--Y-----GQEPIVDACFTRDCQCILTCST 228 (341)
Q Consensus 158 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~--~-----~~~~i~~~~~~~~~~~l~~~~~ 228 (341)
......... ..........++|+++.++.... +...+|..... . .........|+|||+.|+..+.
T Consensus 159 --~~~~~~~~~---~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~ 233 (269)
T d2hqsa1 159 --NGGAPQRIT---WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSS 233 (269)
T ss_dssp --TSSCCEECC---CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEE
T ss_pred --ccccceeee---cccccccccccccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEc
Confidence 111111110 12234566778888888777643 33444433322 1 3445677899999999875543
Q ss_pred ---CCeEEEEeccccceeeeecCcccceeEEEEEeCC
Q psy17863 229 ---DECLRLFDKATGELLEEYKGHKSGDFRIECCLDS 262 (341)
Q Consensus 229 ---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (341)
...|+++++..+.. ..+......+... +|+|
T Consensus 234 ~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p--~WSP 267 (269)
T d2hqsa1 234 QGMGSVLNLVSTDGRFK-ARLPATDGQVKFP--AWSP 267 (269)
T ss_dssp ETTEEEEEEEETTSCCE-EECCCSSSEEEEE--EECC
T ss_pred CCCCcEEEEEECCCCCE-EEEeCCCCcEEeE--EeCC
Confidence 34688999876554 4455445444444 6777
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.26 E-value=7.4e-08 Score=75.77 Aligned_cols=225 Identities=13% Similarity=0.101 Sum_probs=141.2
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC----CCcEEEEECCCCce
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS----DKSVILWEVTTGQP 89 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~~~ 89 (341)
..+..++|.++|++.++-...+.|..|+..+++....+.........+++++||+++++... .+.+...+...+..
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence 34568999999998887778899999998877666665556667889999999988776543 23355555554443
Q ss_pred eeeecc--cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceee
Q psy17863 90 VRRWRE--HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQIST 167 (341)
Q Consensus 90 ~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~ 167 (341)
...... -......+++.++|++.++..... ... ..+.+..++... +.+..
T Consensus 120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~----------~~~-----------------~~g~v~~~~~dg-~~~~~ 171 (319)
T d2dg1a1 120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY----------STN-----------------PLGGVYYVSPDF-RTVTP 171 (319)
T ss_dssp EEEECSSSSCCCEEEEEECTTSCEEEEECCCB----------TTB-----------------CCEEEEEECTTS-CCEEE
T ss_pred eeeccCCCcccCCcceeEEeccceeecccccc----------ccc-----------------CcceeEEEeccc-ceeEE
Confidence 333221 123467888888887655532110 000 011222222221 11122
Q ss_pred eEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc---------------CCCCeEEEEEccCCCEEEEeecCC
Q psy17863 168 LIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY---------------GQEPIVDACFTRDCQCILTCSTDE 230 (341)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~---------------~~~~i~~~~~~~~~~~l~~~~~d~ 230 (341)
+.. .....+.++++|+++.+..+. .+.|..|++.... .......+++.++|++.++....+
T Consensus 172 ~~~--~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g 249 (319)
T d2dg1a1 172 IIQ--NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG 249 (319)
T ss_dssp EEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT
T ss_pred Eee--ccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCC
Confidence 211 123367899999998765554 4778888765432 112245689999999888888899
Q ss_pred eEEEEeccccceeeeecCcc------cceeEEEEEeCCCCCEEEEec
Q psy17863 231 CLRLFDKATGELLEEYKGHK------SGDFRIECCLDSKDSQIFCGS 271 (341)
Q Consensus 231 ~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~ 271 (341)
.|.+||. .|+.+.++.... ..+.++ ++.+++..+++..
T Consensus 250 ~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~--~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 250 RVLVFNK-RGYPIGQILIPGRDEGHMLRSTHP--QFIPGTNQLIICS 293 (319)
T ss_dssp EEEEECT-TSCEEEEEECTTGGGTCSCBCCEE--EECTTSCEEEEEE
T ss_pred EEEEECC-CCcEEEEEeCCCcCCCcCceeeeE--EEeCCCCEEEEEc
Confidence 9999996 588877775332 234444 7878776666544
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.04 E-value=6.9e-08 Score=73.62 Aligned_cols=194 Identities=7% Similarity=0.047 Sum_probs=119.1
Q ss_pred cEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeec
Q psy17863 15 AIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 94 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 94 (341)
....++++++|+++++....+.+++++..+...+.... .......+++.++++++++-..+..+..++...........
T Consensus 58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~ 136 (260)
T d1rwia_ 58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF 136 (260)
T ss_dssp SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC
T ss_pred CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee-eeeecccccccccceeEeeccccccccccccccceeeeeee
Confidence 35678999999988887777777777765555443333 23456889999999888776667777777765433222211
Q ss_pred ccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecC
Q psy17863 95 EHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK 174 (341)
Q Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 174 (341)
........+++.++++.+++...++.|..++.+.... ..+.. .
T Consensus 137 ~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~-----------------------~~~~~------------~-- 179 (260)
T d1rwia_ 137 TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-----------------------VVLPF------------T-- 179 (260)
T ss_dssp CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE-----------------------EECCC------------S--
T ss_pred cccCCcceeeecCCCCEeeecccccccccccccccee-----------------------eeeec------------c--
Confidence 2223456788888888777777777777776553220 00000 0
Q ss_pred ceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccceeeeec-Ccccce
Q psy17863 175 AVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGELLEEYK-GHKSGD 253 (341)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~ 253 (341)
.......+++.++|+++++....+.|..++...... ..+. ..-...
T Consensus 180 --------------------------------~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P 226 (260)
T d1rwia_ 180 --------------------------------DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTP 226 (260)
T ss_dssp --------------------------------SCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCE
T ss_pred --------------------------------ccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCCe
Confidence 012235567777777777777777788777653322 2221 111223
Q ss_pred eEEEEEeCCCCCEEEEecCCCcEEEEee
Q psy17863 254 FRIECCLDSKDSQIFCGSSDGKIYKWQL 281 (341)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 281 (341)
..+ +++++|+++++-..+++|+.++.
T Consensus 227 ~~i--~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 227 LAV--AVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp EEE--EECTTCCEEEEEGGGTEEEEECC
T ss_pred EEE--EEeCCCCEEEEECCCCEEEEEeC
Confidence 444 78888887777666676665553
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.99 E-value=9.1e-07 Score=67.99 Aligned_cols=182 Identities=13% Similarity=0.253 Sum_probs=110.4
Q ss_pred CCCeEEEEcCCCcceeeEec-CcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeee--cccCccEEEEEEcCCC
Q psy17863 33 SDKKIKLWNPYRNLLLKTYG-GHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRW--REHASKVTCVKFNEDS 109 (341)
Q Consensus 33 ~dg~i~iw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~~v~~~~~~~~~ 109 (341)
.++.|..++. .++....+. ........+++.+++.++++....+.+.+++. +++.+..+ ..+......+++.+++
T Consensus 91 ~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g 168 (279)
T d1q7fa_ 91 PTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQ 168 (279)
T ss_dssp GGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSS
T ss_pred Cccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccce
Confidence 3456666764 455555553 23455678888888888888777788888884 45655554 2345667788888888
Q ss_pred cEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceE
Q psy17863 110 SVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHI 189 (341)
Q Consensus 110 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (341)
+.+++....+.|.+||..... +..+...
T Consensus 169 ~i~v~d~~~~~V~~~d~~G~~----------------------------------~~~~g~~------------------ 196 (279)
T d1q7fa_ 169 EIFISDNRAHCVKVFNYEGQY----------------------------------LRQIGGE------------------ 196 (279)
T ss_dssp EEEEEEGGGTEEEEEETTCCE----------------------------------EEEESCT------------------
T ss_pred eEEeeeccccceeeeecCCce----------------------------------eeeeccc------------------
Confidence 877777777777777643210 0000000
Q ss_pred EEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeec-CCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEE
Q psy17863 190 MSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCST-DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIF 268 (341)
Q Consensus 190 ~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 268 (341)
........+++.++|+.+++-.. ++.|.+|+. +|+.+..+...........+++.++|.+++
T Consensus 197 ----------------g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V 259 (279)
T d1q7fa_ 197 ----------------GITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVL 259 (279)
T ss_dssp ----------------TTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEE
T ss_pred ----------------ccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE
Confidence 00122345666777775555433 346777774 466666654332221223337889987555
Q ss_pred EecCCCcEEEEeeeCCCc
Q psy17863 269 CGSSDGKIYKWQLVDSSQ 286 (341)
Q Consensus 269 ~~~~dg~i~iwd~~~~~~ 286 (341)
++.+..|++|......+
T Consensus 260 -~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 260 -ASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp -EETTTEEEEEECSCCCC
T ss_pred -EeCCCeEEEEEeeeecC
Confidence 55789999999876543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=9.2e-08 Score=79.22 Aligned_cols=269 Identities=10% Similarity=0.036 Sum_probs=152.6
Q ss_pred EEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecC---cccceeEEEEecCCCEEEEec---------CCCcEEEEECCC
Q psy17863 19 VRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG---HAHEVNDATAACDSSQIASGA---------SDKSVILWEVTT 86 (341)
Q Consensus 19 ~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~---------~dg~i~iw~~~~ 86 (341)
..|.+++.++.. ..+|.|.+||+.+++....+.. ....+....|+||+++++... ..+.+.++|+.+
T Consensus 22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~ 100 (465)
T d1xfda1 22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (465)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence 468888876654 5578999999988876444432 223577888999999987753 357789999998
Q ss_pred Cceeeee--cccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcc
Q psy17863 87 GQPVRRW--REHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQ 164 (341)
Q Consensus 87 ~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~ 164 (341)
++..... ......+....|+|||+.+|-.. ++.|.+.+..++. .+........+.+.-|-.| |-.
T Consensus 101 ~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~--~~~lt~~g~~~~i~nG~~d-----~vy----- 167 (465)
T d1xfda1 101 GDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQ--AIRVVSTGKEGVIYNGLSD-----WLY----- 167 (465)
T ss_dssp CCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSC--CEEEECCCBTTTEEEEECC-----HHH-----
T ss_pred CceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCc--eEEEecccCcceeeccccc-----hhh-----
Confidence 8654332 22344566789999999988775 5677777766544 2222211111112211111 000
Q ss_pred eeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEcccc--cCCCCeEEEEEccCCCEEEEeecCCeEEEEecccc
Q psy17863 165 ISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEED--YGQEPIVDACFTRDCQCILTCSTDECLRLFDKATG 240 (341)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 240 (341)
.......-..+.|+|+|+.|+... +..+..+.+... .....+..+.+..-|.. .....+.++|+.++
T Consensus 168 -----eee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~----np~~~l~v~d~~~~ 238 (465)
T d1xfda1 168 -----EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE----NPSISLHVIGLNGP 238 (465)
T ss_dssp -----HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC----CCEEEEEEEESSSS
T ss_pred -----hhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCC----CCceeEEEEecCCC
Confidence 000011235678999999998874 345555544322 12223344443322221 11235778888765
Q ss_pred ceeeeecC----cccceeEEEEEeCCCCCEEEEecC----CCcEEEEeeeCCCceEEEEeeeeccce----EEEEEcCCC
Q psy17863 241 ELLEEYKG----HKSGDFRIECCLDSKDSQIFCGSS----DGKIYKWQLVDSSQISTLIHSVGKAVV----NSLCSHPTR 308 (341)
Q Consensus 241 ~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~v----~~~~~~~~~ 308 (341)
........ .........+.|++++++++.... ...+.++|..+++....+.. .....| ....|+|||
T Consensus 239 ~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e-~~~~wv~~~~~~p~~~~dg 317 (465)
T d1xfda1 239 THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED-ESEAWLHRQNEEPVFSKDG 317 (465)
T ss_dssp CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE-ECSSCCCCCCCCCEECTTS
T ss_pred cEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEE-cCCceEeccCCceeEccCC
Confidence 43222111 111122233478899887665432 23588889888876655442 222222 345789999
Q ss_pred cEE
Q psy17863 309 KHI 311 (341)
Q Consensus 309 ~~l 311 (341)
+.+
T Consensus 318 ~~~ 320 (465)
T d1xfda1 318 RKF 320 (465)
T ss_dssp CSE
T ss_pred Cee
Confidence 843
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.90 E-value=5e-07 Score=69.40 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=67.2
Q ss_pred EEccC--CCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecC----C--CcEEEEECCCCceee
Q psy17863 20 RFNVD--GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGAS----D--KSVILWEVTTGQPVR 91 (341)
Q Consensus 20 ~~~~~--~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d--g~i~iw~~~~~~~~~ 91 (341)
..+|| |+.+|-.+ +|.|.+.|+.+++. ..+..+.+.+...+|+|||+.|+.... + ..|.+++..+++..+
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCE-EEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 45788 99888765 56788889987775 456667788899999999999886532 1 247778877776544
Q ss_pred eecc------cCccEEEEEEcCCCcEEEEec
Q psy17863 92 RWRE------HASKVTCVKFNEDSSVVISGS 116 (341)
Q Consensus 92 ~~~~------~~~~v~~~~~~~~~~~l~~~~ 116 (341)
.... .........|+|+++.|+...
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred eeecCCCccCccccccccccCCCCCEEEEEE
Confidence 3211 123456788999999887654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.75 E-value=1.8e-05 Score=60.95 Aligned_cols=223 Identities=12% Similarity=0.107 Sum_probs=127.5
Q ss_pred EEEEEccC-CCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecc
Q psy17863 17 RAVRFNVD-GSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWRE 95 (341)
Q Consensus 17 ~~~~~~~~-~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 95 (341)
-+..|.+. +++..+=-..+.|.-||..+++.. .+. ....+.++++.+++.++++ +.+| +..+|..+++.......
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~g-l~~~d~~tg~~~~l~~~ 96 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDDG-LFLRDTATGVLTLHAEL 96 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETTE-EEEEETTTCCEEEEECS
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeCc-cEEeecccceeeEEeee
Confidence 35678874 444445446789999998887643 333 3456889999999876665 4554 88999988875433221
Q ss_pred ----cCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEee
Q psy17863 96 ----HASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS 171 (341)
Q Consensus 96 ----~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 171 (341)
....+..+.+.|+|++.++...+.. . .+.-.+|.+..++..... .
T Consensus 97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~---------~--------------------~~~g~l~~~~~g~~~~~~-~- 145 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGALWIGTMGRKA---------E--------------------TGAGSIYHVAKGKVTKLF-A- 145 (295)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTC---------C--------------------TTCEEEEEEETTEEEEEE-E-
T ss_pred ecCCCcccceeeEECCCCCEEEEeccccc---------c--------------------ccceeEeeecCCcEEEEe-e-
Confidence 1235778888888876554322110 0 011122222222111111 1
Q ss_pred ecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEE-EEeecCCeEEEEecccc------ce--
Q psy17863 172 VGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCI-LTCSTDECLRLFDKATG------EL-- 242 (341)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~------~~-- 242 (341)
.....+.+ +++++++.+ ++-+..+.|..|++... +.
T Consensus 146 -~~~~~Ng~----------------------------------~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~ 190 (295)
T d2ghsa1 146 -DISIPNSI----------------------------------CFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEV 190 (295)
T ss_dssp -EESSEEEE----------------------------------EECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEE
T ss_pred -ccCCccee----------------------------------eecCCCceEEEeecccceeeEeeecccccccccceEE
Confidence 11123344 444544433 33344556666664321 11
Q ss_pred eeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEc-CCCcEEEEe
Q psy17863 243 LEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSH-PTRKHIMSA 314 (341)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~ 314 (341)
...+.+.......+ +++.+|++.++.-..+.|..|| .+++.+..+. .....+++++|- ||.+.|...
T Consensus 191 ~~~~~~~~g~pdG~--~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~--lP~~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 191 FIDSTGIKGGMDGS--VCDAEGHIWNARWGEGAVDRYD-TDGNHIARYE--VPGKQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp EEECTTSSSEEEEE--EECTTSCEEEEEETTTEEEEEC-TTCCEEEEEE--CSCSBEEEEEEESTTSCEEEEE
T ss_pred EeccCcccccccce--EEcCCCCEEeeeeCCCceEEec-CCCcEeeEec--CCCCceEEEEEeCCCCCEEEEE
Confidence 11112222333444 7889998887777788999999 6789888887 344568999996 666555443
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.63 E-value=6e-05 Score=60.41 Aligned_cols=256 Identities=11% Similarity=0.051 Sum_probs=136.0
Q ss_pred cEEEEEEccCCCEEEEEeCC-----C------eEEEEcCCCcceeeE--e-cCcccceeEEEEecCCCEEEEecCC-CcE
Q psy17863 15 AIRAVRFNVDGSYCLTCGSD-----K------KIKLWNPYRNLLLKT--Y-GGHAHEVNDATAACDSSQIASGASD-KSV 79 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~~d-----g------~i~iw~~~~~~~~~~--~-~~~~~~v~~~~~~~~~~~l~~~~~d-g~i 79 (341)
++.......+|+.++.|+.+ + .+.+||+.+++.... . ..+.......++.+++++++.|+.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence 33444556688888888752 1 378999988754321 2 2233334566788999999988765 679
Q ss_pred EEEECCCCceeeeecc-cCccEEEEEEcCCCcEEEEecCC------CeEEEEEecCCCCcCe------------------
Q psy17863 80 ILWEVTTGQPVRRWRE-HASKVTCVKFNEDSSVVISGSQD------NTVMMWDVKSRSHHPI------------------ 134 (341)
Q Consensus 80 ~iw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~------------------ 134 (341)
.+||..+......-.. ....-...+..+|++.++.++.+ ..+.+||+.+.+-..+
T Consensus 101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 180 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR 180 (387)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred eEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceee
Confidence 9999887654322111 11122356677899999988753 3688899876531100
Q ss_pred -----EEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecC-------ceEEEEEECCCCceEEEeCCC-------
Q psy17863 135 -----QCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGK-------AVVNSLCSHPTRKHIMSACGN------- 195 (341)
Q Consensus 135 -----~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~------- 195 (341)
.......+..+..+...+.+..++..+............. ..-..+....+++.++.++..
T Consensus 181 ~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~ 260 (387)
T d1k3ia3 181 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA 260 (387)
T ss_dssp TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred ccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcc
Confidence 0011111223344444555566665554332221111111 011122223456666665421
Q ss_pred --ceEEEEcccc-------------cCCCCeEEEEEccCCCEEEEeecCC-----------eEEEEeccccce--eeeec
Q psy17863 196 --NVKLWTAEED-------------YGQEPIVDACFTRDCQCILTCSTDE-----------CLRLFDKATGEL--LEEYK 247 (341)
Q Consensus 196 --~i~~~~~~~~-------------~~~~~i~~~~~~~~~~~l~~~~~d~-----------~i~i~d~~~~~~--~~~~~ 247 (341)
...+.+.... .....-.+....+|++++++|+.+. .+.+||..+.+- +..+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~ 340 (387)
T d1k3ia3 261 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS 340 (387)
T ss_dssp CCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS
T ss_pred cceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCC
Confidence 1222222110 1222334566778999999988531 478899876542 22222
Q ss_pred CcccceeEEEEEeCCCCCEEEEecC
Q psy17863 248 GHKSGDFRIECCLDSKDSQIFCGSS 272 (341)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~~ 272 (341)
..... ... ..+.+||+.++.|+.
T Consensus 341 ~~R~~-Hs~-a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 341 IVRVY-HSI-SLLLPDGRVFNGGGG 363 (387)
T ss_dssp SCCCT-TEE-EEECTTSCEEEEECC
T ss_pred Ccccc-eEE-EEECCCCEEEEEeCC
Confidence 11110 111 146789999988874
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=98.52 E-value=9.3e-05 Score=62.74 Aligned_cols=281 Identities=11% Similarity=0.068 Sum_probs=145.5
Q ss_pred CEEEEEeCCCeEEEEcCCCcceeeEecCcccce-eEEEEec--CCCEEEEecC------CCcEEEEECCCCceeeeeccc
Q psy17863 26 SYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEV-NDATAAC--DSSQIASGAS------DKSVILWEVTTGQPVRRWREH 96 (341)
Q Consensus 26 ~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v-~~~~~~~--~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~ 96 (341)
.+++.++.|+.|.-.|.++++++..+....... ..+.-.| -+..++++.. .|.|+-+|..+|+.+.++...
T Consensus 122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~ 201 (596)
T d1w6sa_ 122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (596)
T ss_dssp CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeecc
Confidence 468888889999999999999988875321110 0111111 1335555543 488999999999988765321
Q ss_pred C-------------------------------------cc-EEEEEEcCCCcEEEEecCC----------------CeEE
Q psy17863 97 A-------------------------------------SK-VTCVKFNEDSSVVISGSQD----------------NTVM 122 (341)
Q Consensus 97 ~-------------------------------------~~-v~~~~~~~~~~~l~~~~~d----------------~~i~ 122 (341)
. .. -..+++.+...+++.+..+ ..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~siv 281 (596)
T d1w6sa_ 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (596)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccc
Confidence 0 01 1233555555555554322 3355
Q ss_pred EEEecCCCC------------------cCeEE-eecCCC---ceEEEeeccCeEEEEEccCCcceeeeEeeecCceEE--
Q psy17863 123 MWDVKSRSH------------------HPIQC-CLDSKD---SQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVN-- 178 (341)
Q Consensus 123 iwd~~~~~~------------------~~~~~-~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~-- 178 (341)
-.|+++++. .++.. ....++ ..++....+|.+.++|..+++.+.............
T Consensus 282 AlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~ 361 (596)
T d1w6sa_ 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSV 361 (596)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred ccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccccccc
Confidence 566666541 11111 111121 257778889999999999988765433211111111
Q ss_pred -----------------------------------EEEECCCCceEEEeCCCceEEEEcccccC--C----CCeEEEEEc
Q psy17863 179 -----------------------------------SLCSHPTRKHIMSACGNNVKLWTAEEDYG--Q----EPIVDACFT 217 (341)
Q Consensus 179 -----------------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~----~~i~~~~~~ 217 (341)
..+++|+..++.......-..+....... . ..-......
T Consensus 362 d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 441 (596)
T d1w6sa_ 362 DLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPG 441 (596)
T ss_dssp CTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred cccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccccccC
Confidence 12233333333332221111111111100 0 000011111
Q ss_pred cCCCEEEEeecCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEee--ee
Q psy17863 218 RDCQCILTCSTDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHS--VG 295 (341)
Q Consensus 218 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~ 295 (341)
|.+... ..-.-|.|.-||+.+++.+-...... +...- .++..+.+++.|+.||.++-+|.++|+.+.++... ..
T Consensus 442 ~~g~~~-~~~~~G~l~A~D~~TG~~~W~~~~~~-~~~gg--~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~ 517 (596)
T d1w6sa_ 442 PKGDRQ-NYEGLGQIKAYNAITGDYKWEKMERF-AVWGG--TMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAI 517 (596)
T ss_dssp TTSBTT-TTBCCEEEEEECTTTCCEEEEEEESS-CCCSB--CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred cccCcc-cCCCcceEEEEeCCCCceecccCCCC-CCccc--eeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcc
Confidence 111100 00112678889999988766543211 11111 12234678889999999999999999999988732 22
Q ss_pred ccceEEEEEcCCCc-EEEE
Q psy17863 296 KAVVNSLCSHPTRK-HIMS 313 (341)
Q Consensus 296 ~~~v~~~~~~~~~~-~l~~ 313 (341)
..+++ |..+|+ |++.
T Consensus 518 a~P~t---Y~~dGkQYvav 533 (596)
T d1w6sa_ 518 GYPMT---YTHKGTQYVAI 533 (596)
T ss_dssp SCCEE---EEETTEEEEEE
T ss_pred cCCeE---EEECCEEEEEE
Confidence 33443 445775 4543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.42 E-value=8.8e-05 Score=62.62 Aligned_cols=82 Identities=17% Similarity=0.088 Sum_probs=51.9
Q ss_pred CCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCC
Q psy17863 229 DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTR 308 (341)
Q Consensus 229 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 308 (341)
.|.|.-+|+.+++.+-+.......... .+...+.++++|+.||.++-+|.++|+.+.++..... ..-.-+.|..||
T Consensus 443 ~G~l~AiD~~TG~~~W~~~~~~~~~~g---~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~-~~a~P~ty~~dG 518 (571)
T d2ad6a1 443 MGQIRAFDLTTGKAKWTKWEKFAAWGG---TLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG-GIGSPMTYSFKG 518 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSB---CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC-CCSCCEEEEETT
T ss_pred cccEEEeccCCCceeeEcCCCCCCCcc---eeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCC-ceecceEEEECC
Confidence 367888999999887665422111111 1222366888899999999999999999988873211 111224455677
Q ss_pred c-EEEEe
Q psy17863 309 K-HIMSA 314 (341)
Q Consensus 309 ~-~l~~~ 314 (341)
+ |+++.
T Consensus 519 kqYi~v~ 525 (571)
T d2ad6a1 519 KQYIGSM 525 (571)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5 55443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=98.35 E-value=0.00035 Score=58.79 Aligned_cols=81 Identities=10% Similarity=0.071 Sum_probs=51.6
Q ss_pred CeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCc
Q psy17863 230 ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRK 309 (341)
Q Consensus 230 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 309 (341)
|.+.-+|+.+++.+-+...... ...- .+...+.++++|+.||.++-+|.++|+.+.++..... ..-.-+.+..+|+
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~-~~gg--~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~-~~~~P~ty~~dGk 513 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTH-WNGG--TLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSG-IVAAPMTFELAGR 513 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSS-CCCC--EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC-CCSCCEEEEETTE
T ss_pred cceEEEeCCCCeEeeeccCCCC-CCCc--eeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCC-ccccCEEEEECCE
Confidence 6788899999988766542211 1111 1223466888999999999999999999998873211 1111234556775
Q ss_pred -EEEEe
Q psy17863 310 -HIMSA 314 (341)
Q Consensus 310 -~l~~~ 314 (341)
||++.
T Consensus 514 qyv~v~ 519 (560)
T d1kv9a2 514 QYVAIM 519 (560)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 55543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.32 E-value=0.0001 Score=62.20 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=60.6
Q ss_pred CCCEEEEEeCCCeEEEEcC-CCcceeeEecCccc----ce-------eEEEEecCCCEEEEecCCCcEEEEECCCCceee
Q psy17863 24 DGSYCLTCGSDKKIKLWNP-YRNLLLKTYGGHAH----EV-------NDATAACDSSQIASGASDKSVILWEVTTGQPVR 91 (341)
Q Consensus 24 ~~~~l~t~~~dg~i~iw~~-~~~~~~~~~~~~~~----~v-------~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 91 (341)
+|..+++.+.++.|.-.|. ++|+.+.+++.... .. ..+++. +..++.++.||.+...|.++|+.+.
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w 139 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence 3443343334688888887 46998887742110 01 123443 3467788899999999999999876
Q ss_pred eecccC----ccEEEEEEcCCCcEEEEec------CCCeEEEEEecCCC
Q psy17863 92 RWREHA----SKVTCVKFNEDSSVVISGS------QDNTVMMWDVKSRS 130 (341)
Q Consensus 92 ~~~~~~----~~v~~~~~~~~~~~l~~~~------~d~~i~iwd~~~~~ 130 (341)
...... ..++.--.-.++ .++.+. .+|.|.-+|+++++
T Consensus 140 ~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~ 187 (571)
T d2ad6a1 140 EVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred cccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCc
Confidence 553211 111111111133 344443 36789999988876
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=98.32 E-value=6.9e-05 Score=63.39 Aligned_cols=78 Identities=10% Similarity=0.074 Sum_probs=50.2
Q ss_pred CeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeee--eccceEEEEEcCC
Q psy17863 230 ECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV--GKAVVNSLCSHPT 307 (341)
Q Consensus 230 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~ 307 (341)
|.+.-||+.+++.+-..+........ .++..+.++++|+.||.++.+|.++|+.+.++.... ...+ +.|..+
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg---~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~ 530 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGG---TLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVD 530 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCC---EEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEET
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCc---eEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEEC
Confidence 45777788888777665432211111 123357788899999999999999999999887321 2223 345557
Q ss_pred Cc-EEEE
Q psy17863 308 RK-HIMS 313 (341)
Q Consensus 308 ~~-~l~~ 313 (341)
|+ |++.
T Consensus 531 GkQYv~v 537 (573)
T d1kb0a2 531 GRQYVSV 537 (573)
T ss_dssp TEEEEEE
T ss_pred CEEEEEE
Confidence 76 4443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.29 E-value=0.00032 Score=53.03 Aligned_cols=70 Identities=19% Similarity=0.121 Sum_probs=48.5
Q ss_pred eeeEEeeeCCcEEEEEEccCCCEEEEEeC-C-----CeEEEEcCCCcceeeEec------CcccceeEEEEecCCCEEEE
Q psy17863 5 CVQTIDCKQGAIRAVRFNVDGSYCLTCGS-D-----KKIKLWNPYRNLLLKTYG------GHAHEVNDATAACDSSQIAS 72 (341)
Q Consensus 5 ~~~~l~~h~~~v~~~~~~~~~~~l~t~~~-d-----g~i~iw~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~ 72 (341)
..+.|..+.+.+...+|||||+.||.... + ..|.+++..+++...... ..........|+|+++.|+.
T Consensus 32 ~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~ 111 (281)
T d1k32a2 32 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS 111 (281)
T ss_dssp CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred CEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEE
Confidence 45667778888999999999999986532 2 247777877666543221 12234567889999998887
Q ss_pred ec
Q psy17863 73 GA 74 (341)
Q Consensus 73 ~~ 74 (341)
..
T Consensus 112 ~~ 113 (281)
T d1k32a2 112 TD 113 (281)
T ss_dssp EC
T ss_pred EE
Confidence 53
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.18 E-value=0.00066 Score=51.95 Aligned_cols=190 Identities=12% Similarity=0.107 Sum_probs=116.1
Q ss_pred eCCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecC----cccceeEEEEecCCCEEEEecC----CCcEEEEE
Q psy17863 12 KQGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGG----HAHEVNDATAACDSSQIASGAS----DKSVILWE 83 (341)
Q Consensus 12 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~----dg~i~iw~ 83 (341)
....+.++++.++|+++++ +.+ -+.++|..+++....... ....++.+.+.|+|++.++... .+.-.+|.
T Consensus 57 ~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~ 134 (295)
T d2ghsa1 57 LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH 134 (295)
T ss_dssp CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEee
Confidence 3467889999999876665 444 588999888875433221 2236889999999987666432 23456777
Q ss_pred CCCCceeeeecccCccEEEEEEcCCCcEEE-EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 84 VTTGQPVRRWREHASKVTCVKFNEDSSVVI-SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
+..++....... -..-..++|+++++.++ +-+..+.|..+++....... ..
T Consensus 135 ~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~---------------------------~~ 186 (295)
T d2ghsa1 135 VAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLP---------------------------TG 186 (295)
T ss_dssp EETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCB---------------------------SS
T ss_pred ecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeeccccccc---------------------------cc
Confidence 767765444433 23457889999887554 44556777777764322000 00
Q ss_pred cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCCeEEEEeccccce
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDECLRLFDKATGEL 242 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 242 (341)
+. ..+..... .......+++..+|++.++.-..+.|..||. +++.
T Consensus 187 ~~-~~~~~~~~---------------------------------~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~ 231 (295)
T d2ghsa1 187 KA-EVFIDSTG---------------------------------IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNH 231 (295)
T ss_dssp CC-EEEEECTT---------------------------------SSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCE
T ss_pred ce-EEEeccCc---------------------------------ccccccceEEcCCCCEEeeeeCCCceEEecC-CCcE
Confidence 00 00000000 0123455677778887777767888999995 5888
Q ss_pred eeeecCcccceeEEEEEeC-CCCCEEE
Q psy17863 243 LEEYKGHKSGDFRIECCLD-SKDSQIF 268 (341)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~-~~~~~l~ 268 (341)
+..+.-....++++ +|- ++.+.|+
T Consensus 232 ~~~i~lP~~~~T~~--~FGG~d~~~Ly 256 (295)
T d2ghsa1 232 IARYEVPGKQTTCP--AFIGPDASRLL 256 (295)
T ss_dssp EEEEECSCSBEEEE--EEESTTSCEEE
T ss_pred eeEecCCCCceEEE--EEeCCCCCEEE
Confidence 88887665556665 664 5655554
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=98.14 E-value=0.0012 Score=55.73 Aligned_cols=107 Identities=17% Similarity=0.125 Sum_probs=63.5
Q ss_pred CCCEEEEEeCCCeEEEEcC-CCcceeeEecCccc----c-------eeEEEEecC----CCEEEEecCCCcEEEEECCCC
Q psy17863 24 DGSYCLTCGSDKKIKLWNP-YRNLLLKTYGGHAH----E-------VNDATAACD----SSQIASGASDKSVILWEVTTG 87 (341)
Q Consensus 24 ~~~~l~t~~~dg~i~iw~~-~~~~~~~~~~~~~~----~-------v~~~~~~~~----~~~l~~~~~dg~i~iw~~~~~ 87 (341)
+|.++++.+.++.+...|. .+|+.+.++..... . -..+++.++ ..+++.++.|+.|.-.|.++|
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG 141 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence 3444444455677777776 57888887742110 1 123455443 346888999999999999999
Q ss_pred ceeeeecccCccE-EEEEEcC--CCcEEEEecC------CCeEEEEEecCCC
Q psy17863 88 QPVRRWREHASKV-TCVKFNE--DSSVVISGSQ------DNTVMMWDVKSRS 130 (341)
Q Consensus 88 ~~~~~~~~~~~~v-~~~~~~~--~~~~l~~~~~------d~~i~iwd~~~~~ 130 (341)
+.+..+....... ..+.-.| -+..++.+.. .|.|+-+|.++++
T Consensus 142 ~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~ 193 (596)
T d1w6sa_ 142 ETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGE 193 (596)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCC
T ss_pred ceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCc
Confidence 9887764211000 0111111 1334555543 4889999988876
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=98.13 E-value=0.00036 Score=58.66 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=46.7
Q ss_pred EEEEEeCCCeEEEEcCCCcceeeEecCccc----------ce-eEEEEecCCCEEEEecCCCcEEEEECCCCceeeeec
Q psy17863 27 YCLTCGSDKKIKLWNPYRNLLLKTYGGHAH----------EV-NDATAACDSSQIASGASDKSVILWEVTTGQPVRRWR 94 (341)
Q Consensus 27 ~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~----------~v-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 94 (341)
.+..++.++.|.-.|.++|+.+.++..... .+ ..++. .+..++.+..++.+.-.|..+|+.+....
T Consensus 68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~ 144 (560)
T d1kv9a2 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (560)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence 556667789999999999999988642211 00 11122 24568888889999999999999887664
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.12 E-value=0.0011 Score=52.32 Aligned_cols=249 Identities=8% Similarity=-0.009 Sum_probs=144.7
Q ss_pred EEEEcc---CCCEEEEEe-CCCeEEEEcCCCcceeeEecC-cccceeEEEEec--CCCEEEEecCC--------------
Q psy17863 18 AVRFNV---DGSYCLTCG-SDKKIKLWNPYRNLLLKTYGG-HAHEVNDATAAC--DSSQIASGASD-------------- 76 (341)
Q Consensus 18 ~~~~~~---~~~~l~t~~-~dg~i~iw~~~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~d-------------- 76 (341)
.+++.. ||++|+... .++.|-+-|+.+.+..+.... ....+..+...+ +-.|++..+.+
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 455544 789888776 478999999998887554432 233455555544 55577776553
Q ss_pred ----CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCC--eEEEEEecCCCCcCeEEeec-------CCCc
Q psy17863 77 ----KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDN--TVMMWDVKSRSHHPIQCCLD-------SKDS 143 (341)
Q Consensus 77 ----g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~-------~~~~ 143 (341)
+.+.+.|.++.+...+..- ......+.++++|+++++.+.+. .+.+.++.......+..... ..+.
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 2367788888877766653 33456789999999998876542 11111111111000000000 0000
Q ss_pred eEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC--CceEEEEccccc---------------
Q psy17863 144 QIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG--NNVKLWTAEEDY--------------- 206 (341)
Q Consensus 144 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~--------------- 206 (341)
. ..-+.+.+.|.++.........-.-......+.++|+|+++++++. ..+.++|++.-.
T Consensus 248 ~----~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~ 323 (459)
T d1fwxa2 248 Y----QELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA 323 (459)
T ss_dssp S----EEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEE
T ss_pred c----EEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEe
Confidence 0 0012345666554221111111111223678899999999999984 899999987421
Q ss_pred ---CCCCeEEEEEccCCCEEEEeecCCeEEEEecccc----------ceeeeecCcccceeEEE---EEeCCCCCEEEEe
Q psy17863 207 ---GQEPIVDACFTRDCQCILTCSTDECLRLFDKATG----------ELLEEYKGHKSGDFRIE---CCLDSKDSQIFCG 270 (341)
Q Consensus 207 ---~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~----------~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 270 (341)
..-.-...+|+.+|....+-.-|..|.-|++... ..+..+..|-++-.... -...|+|++|++.
T Consensus 324 e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~ 403 (459)
T d1fwxa2 324 EPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL 403 (459)
T ss_dssp CCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred ecccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEe
Confidence 2233456788888876777778999999998643 33445544433222110 0246889998887
Q ss_pred c
Q psy17863 271 S 271 (341)
Q Consensus 271 ~ 271 (341)
.
T Consensus 404 n 404 (459)
T d1fwxa2 404 S 404 (459)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.92 E-value=0.0038 Score=52.48 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=58.0
Q ss_pred CEEEEecCCCcEEEEECCCCceeeeecccC----------ccE-EEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeE-
Q psy17863 68 SQIASGASDKSVILWEVTTGQPVRRWREHA----------SKV-TCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ- 135 (341)
Q Consensus 68 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----------~~v-~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~- 135 (341)
..|++++.++.|.-+|.++|+.+.++.... ..+ ..+.+. ...++.++.|+.+.-.|.++++..-..
T Consensus 78 g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~ 155 (573)
T d1kb0a2 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQN 155 (573)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceeccc
Confidence 356667778889999999999887764210 001 112222 224555666777766666655421100
Q ss_pred ------------EeecCCCceEEEeec------cCeEEEEEccCCcceeeeE
Q psy17863 136 ------------CCLDSKDSQIFCGSS------DGKIYKWQLVDSSQISTLI 169 (341)
Q Consensus 136 ------------~~~~~~~~~~~~~~~------~g~i~~~d~~~~~~~~~~~ 169 (341)
......++.++++.. .|.|+.+|.++++.+..+.
T Consensus 156 ~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 207 (573)
T d1kb0a2 156 TFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (573)
T ss_dssp TTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeee
Confidence 000111345555543 4789999999999887664
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.80 E-value=0.0032 Score=46.99 Aligned_cols=230 Identities=13% Similarity=0.174 Sum_probs=134.8
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCC-ceeeeeccc
Q psy17863 18 AVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTG-QPVRRWREH 96 (341)
Q Consensus 18 ~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~ 96 (341)
+.-.+|..+.||.-+ ..++.++|+++.+.++.+.- ..+|.-=.|-.+ +.|+..+. ..|+-|+++.. ++.+.+..|
T Consensus 67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~-~~L~lVT~-taVYHW~~~g~s~P~k~fdR~ 142 (327)
T d1utca2 67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVTD-NAVYHWSMEGESQPVKMFDRH 142 (327)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSS-SEEEEECS-SEEEEEESSSSCCCEEEEECC
T ss_pred hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCC-CEEEEEcC-CceEEEcccCCCCchhhhhhc
Confidence 344578888887665 56899999999999988874 446655667644 44554443 56999999543 455555544
Q ss_pred C----ccEEEEEEcCCCcEEEEec-------CCCeEEEEEecCCCCcCeE-------EeecC---CCceEEE-e---ecc
Q psy17863 97 A----SKVTCVKFNEDSSVVISGS-------QDNTVMMWDVKSRSHHPIQ-------CCLDS---KDSQIFC-G---SSD 151 (341)
Q Consensus 97 ~----~~v~~~~~~~~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~-------~~~~~---~~~~~~~-~---~~~ 151 (341)
. ..|..-..+++.++++..+ -.|.+.+|..+.+...++. ....+ ....+++ + ...
T Consensus 143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~ 222 (327)
T d1utca2 143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 222 (327)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCC
Confidence 3 4677778888888776543 1366778877664322111 01000 0111211 1 122
Q ss_pred CeEEEEEccCCcc-eeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEeecCC
Q psy17863 152 GKIYKWQLVDSSQ-ISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTCSTDE 230 (341)
Q Consensus 152 g~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 230 (341)
+++++.++..... -..+. .....+-+.|+. ..+-..++..++....+..-+.-|
T Consensus 223 ~kLhIiEig~~~~g~~~f~-----kk~vdi~fppea--------------------~~DFPvamqvs~kygiiyviTK~G 277 (327)
T d1utca2 223 GKLHIIEVGTPPTGNQPFP-----KKAVDVFFPPEA--------------------QNDFPVAMQISEKHDVVFLITKYG 277 (327)
T ss_dssp EEEEEEECSCCCTTCCCCC-----CEEEECCCCTTC--------------------TTCCEEEEEEETTTTEEEEEETTS
T ss_pred cEEEEEEcCCCccCCCCCc-----ceeEEEECCccc--------------------cCCcEEEEEeeccCCEEEEEecCc
Confidence 4555555544211 11110 001122222221 234456778888888899999999
Q ss_pred eEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEE
Q psy17863 231 CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYK 278 (341)
Q Consensus 231 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 278 (341)
.+++||++++.++..-+-....+... +.+.+..=+++-..+|.|.-
T Consensus 278 ~i~lyDleTgt~i~~nRIs~~~iF~~--a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 278 YIHLYDLETGTCIYMNRISGETIFVT--APHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEE--EEETTTTEEEEEETTSEEEE
T ss_pred EEEEEEcccccEEEEeecCCCceEEe--ccCCCCceEEEECCCCeEEE
Confidence 99999999999988776666666644 34444334555556666543
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.77 E-value=0.0079 Score=50.60 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=54.0
Q ss_pred CCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeee--eccceEEEEEcC
Q psy17863 229 DECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSV--GKAVVNSLCSHP 306 (341)
Q Consensus 229 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~ 306 (341)
.|.|.-+|+.+++.+-+.+.+... ..- .++..+.++++|+.||.++-+|.++|+.+.++.... +..+ +.|..
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p~-~~g--~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~ 538 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLPL-WAG--VLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP---ITWEQ 538 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCC-CSC--CEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEE
T ss_pred CCeEEEEcCCCCcEEeecCCCCCC-ccc--eeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEE
Confidence 467888999999887776543221 111 223456788899999999999999999999887321 2223 45667
Q ss_pred CCc-EEEE
Q psy17863 307 TRK-HIMS 313 (341)
Q Consensus 307 ~~~-~l~~ 313 (341)
+|+ |++.
T Consensus 539 ~G~qYv~i 546 (582)
T d1flga_ 539 DGEQYLGV 546 (582)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 785 5544
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.71 E-value=0.0047 Score=46.07 Aligned_cols=248 Identities=13% Similarity=0.158 Sum_probs=142.4
Q ss_pred CCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEE
Q psy17863 34 DKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVI 113 (341)
Q Consensus 34 dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 113 (341)
..+|.|-|+.++....+-. -..-+.-.+|..+.|+.-+ ..++.++|+++.+.+..+.- ..+|.--.|-.+. .|+
T Consensus 44 ~~~VvIidl~n~~~~~Rrp---i~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~ 117 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVA 117 (327)
T ss_dssp EEEEEEEETTSTTSCEEEE---CCCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSS-EEE
T ss_pred CceEEEEECCCCCcceecc---cchhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecCCC-EEE
Confidence 4578888887655332221 1223445688888887765 46799999999988887763 4566667776544 455
Q ss_pred EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC
Q psy17863 114 SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC 193 (341)
Q Consensus 114 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (341)
..+ +..|.-|+++... .| ++++|.... .....|..-..++++++++..+
T Consensus 118 lVT-~taVYHW~~~g~s-~P--------------------~k~fdR~~~---------L~~~QIInY~~d~~~kW~~l~G 166 (327)
T d1utca2 118 LVT-DNAVYHWSMEGES-QP--------------------VKMFDRHSS---------LAGCQIINYRTDAKQKWLLLTG 166 (327)
T ss_dssp EEC-SSEEEEEESSSSC-CC--------------------EEEEECCGG---------GTTCEEEEEEECTTSCEEEEEE
T ss_pred EEc-CCceEEEcccCCC-Cc--------------------hhhhhhccc---------ccCceEEEEEECCCCCEEEEEe
Confidence 544 3578999986432 22 233332210 1234466666677777665543
Q ss_pred --------CCceEEEEccccc------CCCCeEEEEEccCC---CEEEE---eecCCeEEEEeccccc---e------ee
Q psy17863 194 --------GNNVKLWTAEEDY------GQEPIVDACFTRDC---QCILT---CSTDECLRLFDKATGE---L------LE 244 (341)
Q Consensus 194 --------~~~i~~~~~~~~~------~~~~i~~~~~~~~~---~~l~~---~~~d~~i~i~d~~~~~---~------~~ 244 (341)
.|.+.+|..+... |......+.+..+. +.++. +...+.+++.++.... . +.
T Consensus 167 I~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vd 246 (327)
T d1utca2 167 ISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD 246 (327)
T ss_dssp EEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEE
T ss_pred EecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEE
Confidence 2578888877643 11111111111110 11221 1223678888875421 1 11
Q ss_pred e-ecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEE
Q psy17863 245 E-YKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVK 320 (341)
Q Consensus 245 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~ 320 (341)
. +......-..+.+..++.-..++.-+.-|.+++||++++.++..-+ -...+|...+-..+..-+++.. +|.|.
T Consensus 247 i~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nR--Is~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 247 VFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR--ISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp CCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE--CCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred EECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEee--cCCCceEEeccCCCCceEEEECCCCeEE
Confidence 1 1111122344555778888889999999999999999999988776 4555665444444433344444 66554
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.69 E-value=0.0068 Score=47.76 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=25.9
Q ss_pred cceEEEEEcCCCcEEEEeC--CCcEEEEEccc
Q psy17863 297 AVVNSLCSHPTRKHIMSAC--GNNVKLWTAEE 326 (341)
Q Consensus 297 ~~v~~~~~~~~~~~l~~~~--d~~i~vw~~~~ 326 (341)
.....+..+|||+++++++ +.++.|+|+++
T Consensus 275 KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~K 306 (459)
T d1fwxa2 275 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR 306 (459)
T ss_dssp SSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred CCCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence 3466788999999999998 99999999974
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.68 E-value=0.0086 Score=48.30 Aligned_cols=100 Identities=15% Similarity=0.044 Sum_probs=64.6
Q ss_pred cEEEEEEccCCCEEEEEe-----CCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEecCC-------------
Q psy17863 15 AIRAVRFNVDGSYCLTCG-----SDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGASD------------- 76 (341)
Q Consensus 15 ~v~~~~~~~~~~~l~t~~-----~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------- 76 (341)
.+...++|||++++|.+- ....++++|+.+++.+...- .......++|.+|++.|+-...+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~ 204 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence 455678899999988432 23479999999998764221 11223568999999987754322
Q ss_pred ---CcEEEEECCCCcee--eeecc--cCccEEEEEEcCCCcEEEEe
Q psy17863 77 ---KSVILWEVTTGQPV--RRWRE--HASKVTCVKFNEDSSVVISG 115 (341)
Q Consensus 77 ---g~i~iw~~~~~~~~--~~~~~--~~~~v~~~~~~~~~~~l~~~ 115 (341)
..|..+.+.+.... ..+.. ....+..+..++++++++..
T Consensus 205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence 25777887765332 23332 23346677788899887643
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.58 E-value=0.0074 Score=44.96 Aligned_cols=107 Identities=6% Similarity=-0.111 Sum_probs=70.6
Q ss_pred EeeeCCcEEEEEEccCCCEEEEE-eCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEE-EecCCCcEEEEECCC
Q psy17863 9 IDCKQGAIRAVRFNVDGSYCLTC-GSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIA-SGASDKSVILWEVTT 86 (341)
Q Consensus 9 l~~h~~~v~~~~~~~~~~~l~t~-~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iw~~~~ 86 (341)
+..+...+..++|.+..+.+.-. ..++.|+..++........+......+..+++..-+..|. +-...+.|.+.++..
T Consensus 31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg 110 (263)
T d1npea_ 31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG 110 (263)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence 44455568889999877766654 4567888888766555444544445688999987555555 445677899999875
Q ss_pred CceeeeecccCccEEEEEEcCCCcEEEEe
Q psy17863 87 GQPVRRWREHASKVTCVKFNEDSSVVISG 115 (341)
Q Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 115 (341)
......+.........+++.|...+++-.
T Consensus 111 ~~~~~l~~~~l~~p~~l~vdp~~g~ly~t 139 (263)
T d1npea_ 111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWT 139 (263)
T ss_dssp CSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred ceEEEEecccccCCcEEEEecccCcEEEe
Confidence 54433333334567888888866555543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.55 E-value=0.012 Score=46.54 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=62.5
Q ss_pred EEEEecCCCEEEEecCC-----C------cEEEEECCCCceeee--e-cccCccEEEEEEcCCCcEEEEecCC-CeEEEE
Q psy17863 60 DATAACDSSQIASGASD-----K------SVILWEVTTGQPVRR--W-REHASKVTCVKFNEDSSVVISGSQD-NTVMMW 124 (341)
Q Consensus 60 ~~~~~~~~~~l~~~~~d-----g------~i~iw~~~~~~~~~~--~-~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~iw 124 (341)
......+++.++.|+.+ + .+.+||..+++.... . ..+.......++.+++++++.|+.+ ..+.+|
T Consensus 24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~y 103 (387)
T d1k3ia3 24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY 103 (387)
T ss_dssp EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEe
Confidence 33344577777777642 1 267899988764322 1 1232333456788999999988765 589999
Q ss_pred EecCCCC----------cCeEEeecCCCceEEEeecc------CeEEEEEccCCc
Q psy17863 125 DVKSRSH----------HPIQCCLDSKDSQIFCGSSD------GKIYKWQLVDSS 163 (341)
Q Consensus 125 d~~~~~~----------~~~~~~~~~~~~~~~~~~~~------g~i~~~d~~~~~ 163 (341)
|..+..- .........++..++.++.. ..+.+||..+.+
T Consensus 104 d~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 104 DSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp EGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred cCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence 9876431 11223333444556665532 357888887654
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.52 E-value=0.019 Score=48.20 Aligned_cols=54 Identities=7% Similarity=0.018 Sum_probs=38.6
Q ss_pred CcEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CCcEEEEEcccccCC
Q psy17863 274 GKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GNNVKLWTAEEDYGQ 330 (341)
Q Consensus 274 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~~~~~~ 330 (341)
|.|.-+|+.+++.+.+.+. ..++.+-..+..+.++++++ ||.++-+|.++++..
T Consensus 466 G~l~AiD~~TG~i~W~~~~---~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~L 520 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKE---HLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp EEEEEECTTTCCEEEEEEE---SSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CeEEEEcCCCCcEEeecCC---CCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEe
Confidence 6788889899988887762 22333222345677888888 999999999887654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.04 Score=40.91 Aligned_cols=234 Identities=12% Similarity=0.021 Sum_probs=114.9
Q ss_pred EEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCCCEEEEec-CCCcEEEEECCCCc----eeeeecccCccEEE
Q psy17863 28 CLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDSSQIASGA-SDKSVILWEVTTGQ----PVRRWREHASKVTC 102 (341)
Q Consensus 28 l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~----~~~~~~~~~~~v~~ 102 (341)
|+.+. ...|+-.++.+.+....+. ....+..+.|.+..+.|.-.. .++.|.--++.... ....+......+..
T Consensus 4 Ll~s~-~~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~g 81 (266)
T d1ijqa1 4 LFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (266)
T ss_dssp EEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEC-CCeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcce
Confidence 44433 3358888887655443333 455677899998877776654 45667766664321 11222223345667
Q ss_pred EEEcCCCcEEE-EecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCCcceeeeEeeecCceEEEEE
Q psy17863 103 VKFNEDSSVVI-SGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLC 181 (341)
Q Consensus 103 ~~~~~~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 181 (341)
+++.+-+..|+ +-...+.|.+.++..................++.-...|.+..-+...... |....
T Consensus 82 lAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~------------I~r~~ 149 (266)
T d1ijqa1 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK------------IKKGG 149 (266)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE------------EEEEE
T ss_pred EEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcc------------eeEec
Confidence 88876444444 445667889988876542111110001111222222334443333211111 11111
Q ss_pred ECCCCceEEEeCCCceEEEEcccccCCCCeEEEEEccCCCEEEEe-ecCCeEEEEeccccceeeeecCcc--cceeEEEE
Q psy17863 182 SHPTRKHIMSACGNNVKLWTAEEDYGQEPIVDACFTRDCQCILTC-STDECLRLFDKATGELLEEYKGHK--SGDFRIEC 258 (341)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~ 258 (341)
. +|.. ...+.. ..-.....+++.+.++.|+.+ ...+.|...++............. .....+
T Consensus 150 ~--dGs~-------~~~l~~----~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~l-- 214 (266)
T d1ijqa1 150 L--NGVD-------IYSLVT----ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSL-- 214 (266)
T ss_dssp T--TSCC-------EEEEEC----SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEE--
T ss_pred c--CCCc-------eecccc----cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEE--
Confidence 1 1100 000110 012345678888776655554 456788888876443322222222 222334
Q ss_pred EeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE
Q psy17863 259 CLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI 291 (341)
Q Consensus 259 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 291 (341)
++. ++....+-..++.|+..+..+++....+.
T Consensus 215 av~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 215 AVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (266)
T ss_dssp EEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEE-CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence 444 34444454567788888877777666665
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.77 E-value=0.059 Score=39.87 Aligned_cols=101 Identities=14% Similarity=0.068 Sum_probs=59.8
Q ss_pred EEEEEeCCCeEEEEcCCCcc-----eeeEecCcccceeEEEEecCCCEEEEe-cCCCcEEEEECCCCceeeeecccCccE
Q psy17863 27 YCLTCGSDKKIKLWNPYRNL-----LLKTYGGHAHEVNDATAACDSSQIASG-ASDKSVILWEVTTGQPVRRWREHASKV 100 (341)
Q Consensus 27 ~l~t~~~dg~i~iw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~v 100 (341)
+|+-+. .+.|+-.+++... ....+..+...+..++|.+..+.|+.. ..++.|...++..+.....+......+
T Consensus 3 fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p 81 (263)
T d1npea_ 3 HLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (263)
T ss_dssp EEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccc
Confidence 344433 3456666654322 122233455568889999877777665 456778888887665544444334567
Q ss_pred EEEEEcCCCcEEE-EecCCCeEEEEEecC
Q psy17863 101 TCVKFNEDSSVVI-SGSQDNTVMMWDVKS 128 (341)
Q Consensus 101 ~~~~~~~~~~~l~-~~~~d~~i~iwd~~~ 128 (341)
..+++..-+..|+ +-...+.|.+.++..
T Consensus 82 ~~iAvD~~~~~lY~~d~~~~~I~~~~~dg 110 (263)
T d1npea_ 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDG 110 (263)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred cEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence 8888876444454 444456666666553
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.72 E-value=0.099 Score=41.82 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=39.7
Q ss_pred cceeEEEEecCCCEEEEe-----cCCCcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEec
Q psy17863 56 HEVNDATAACDSSQIASG-----ASDKSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS 116 (341)
Q Consensus 56 ~~v~~~~~~~~~~~l~~~-----~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 116 (341)
-.+....++|++++++.+ +....++++|+.+++.+...- .......++|.+|++.|+-..
T Consensus 125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~ 189 (430)
T d1qfma1 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNA 189 (430)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEE
T ss_pred ceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEE
Confidence 345566789999998853 223569999999998764221 111224678999888776543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.42 E-value=0.1 Score=38.54 Aligned_cols=216 Identities=8% Similarity=-0.079 Sum_probs=110.2
Q ss_pred CcEEEEECCCCceeeeecccCccEEEEEEcCCCcEEEEec-CCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEE
Q psy17863 77 KSVILWEVTTGQPVRRWREHASKVTCVKFNEDSSVVISGS-QDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIY 155 (341)
Q Consensus 77 g~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~ 155 (341)
..|+-.++++.+...... ....+..++|++..+.|+-.. ..+.|.-.++........
T Consensus 10 ~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~--------------------- 67 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS--------------------- 67 (266)
T ss_dssp SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------------
T ss_pred CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcc---------------------
Confidence 358888987665444333 445677899988766666543 445555555443211000
Q ss_pred EEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeC--CCceEEEEccccc-------CCCCeEEEEEccCCCEEEEe
Q psy17863 156 KWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC--GNNVKLWTAEEDY-------GQEPIVDACFTRDCQCILTC 226 (341)
Q Consensus 156 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~ 226 (341)
...........+..+++.+.+..+..+. .+.|.+.++.... .......+++.|...+++..
T Consensus 68 ----------~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~ 137 (266)
T d1ijqa1 68 ----------YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWT 137 (266)
T ss_dssp ----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEE
T ss_pred ----------eEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEe
Confidence 0000001112234455554444433332 2445555554432 23456788888865555543
Q ss_pred e--cCCeEEEEeccccceeeeec-CcccceeEEEEEeCCCCCEEEEe-cCCCcEEEEeeeCCCceEEEEeeeeccceEEE
Q psy17863 227 S--TDECLRLFDKATGELLEEYK-GHKSGDFRIECCLDSKDSQIFCG-SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSL 302 (341)
Q Consensus 227 ~--~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 302 (341)
. ..+.|...++.. .....+. ..-.....+ ++++.++.|+.+ ...+.|...++...................++
T Consensus 138 ~~~~~~~I~r~~~dG-s~~~~l~~~~~~~p~gl--~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~l 214 (266)
T d1ijqa1 138 DWGTPAKIKKGGLNG-VDIYSLVTENIQWPNGI--TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSL 214 (266)
T ss_dssp ECSSSCEEEEEETTS-CCEEEEECSSCSCEEEE--EEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEE
T ss_pred ccCCCcceeEeccCC-CceecccccccceeeEE--EeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEE
Confidence 3 334566666653 3333332 222333444 777777666555 56788888887544433333311222345677
Q ss_pred EEcCCCcEEEEeC-CCcEEEEEccccc
Q psy17863 303 CSHPTRKHIMSAC-GNNVKLWTAEEDY 328 (341)
Q Consensus 303 ~~~~~~~~l~~~~-d~~i~vw~~~~~~ 328 (341)
++.. +.+..+-. ++.|.-.+..++.
T Consensus 215 av~~-~~ly~td~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 215 AVFE-DKVFWTDIINEAIFSANRLTGS 240 (266)
T ss_dssp EEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred EEEC-CEEEEEECCCCeEEEEECCCCc
Confidence 7763 34444444 7777777765544
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.94 E-value=0.15 Score=35.72 Aligned_cols=206 Identities=11% Similarity=0.133 Sum_probs=113.1
Q ss_pred CCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEecCC--CEEEE------ecCCCcEEEEECCCCceeeeecc
Q psy17863 24 DGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAACDS--SQIAS------GASDKSVILWEVTTGQPVRRWRE 95 (341)
Q Consensus 24 ~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~------~~~dg~i~iw~~~~~~~~~~~~~ 95 (341)
+.++++++...|.+.++-+..++.++--+ .+|.... .|.. .++.. |.+-..|.+-++...-....+..
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~-~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~s 100 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA 100 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEEC-EECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTT
T ss_pred CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcC-CCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecC
Confidence 34477888789999999887776554322 3333221 1211 11211 12223345555442222233333
Q ss_pred cC-ccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeE------EeecCCCc-------------eEEEeec-cCeE
Q psy17863 96 HA-SKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQ------CCLDSKDS-------------QIFCGSS-DGKI 154 (341)
Q Consensus 96 ~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~-------------~~~~~~~-~g~i 154 (341)
.. -.|.++++. +.+..++|+......+|-++.++..... ......++ .++++.- .|.+
T Consensus 101 pk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~l 179 (313)
T d2hu7a1 101 VKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL 179 (313)
T ss_dssp SCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEE
T ss_pred CceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCE
Confidence 22 567777775 4567778888788888888877632211 11111111 2333333 5666
Q ss_pred EEEEccCCcceeeeEeeecCceEEEEEECCCCceEEEeCC--Cc--eEEEEccccc--------------CCCCeEEEEE
Q psy17863 155 YKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSACG--NN--VKLWTAEEDY--------------GQEPIVDACF 216 (341)
Q Consensus 155 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--i~~~~~~~~~--------------~~~~i~~~~~ 216 (341)
++++... ..++.....+..+. ++... +. ..-+|++.+. ....|+-+-+
T Consensus 180 ri~tpke-------------GS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y 245 (313)
T d2hu7a1 180 RVFDSGE-------------GSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGY 245 (313)
T ss_dssp EEECCSS-------------EEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEE
T ss_pred EEecCCC-------------CcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeee
Confidence 6665443 34555666666665 22221 21 2233444322 4456777889
Q ss_pred ccCCCEEEEeecCCeEEEEeccccceeeeecCcc
Q psy17863 217 TRDCQCILTCSTDECLRLFDKATGELLEEYKGHK 250 (341)
Q Consensus 217 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 250 (341)
.|++++++.+-.||.-++|. +|+.+..-++..
T Consensus 246 ~Pdd~L~iiakrdG~s~lF~--nGk~in~p~G~~ 277 (313)
T d2hu7a1 246 LPDGRLAVVARREGRSAVFI--DGERVEAPQGNH 277 (313)
T ss_dssp CTTSCEEEEEEETTEEEEEE--TTEEECCCSSEE
T ss_pred CCCCcEEEEEecCCchheee--cceEecCCCCcc
Confidence 99999999999999999987 566665555433
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.85 E-value=0.26 Score=37.83 Aligned_cols=32 Identities=6% Similarity=0.127 Sum_probs=23.4
Q ss_pred CCeEEEEEccCCCEEEEe-ecCCeEEEEecccc
Q psy17863 209 EPIVDACFTRDCQCILTC-STDECLRLFDKATG 240 (341)
Q Consensus 209 ~~i~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~ 240 (341)
...+.++++||+++|+++ +..+.|+.|++...
T Consensus 206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 206 DFANGINISPDGKYVYIAELLAHKIHVYEKHAN 238 (340)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence 346778999998876554 55678999988644
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.57 E-value=0.34 Score=37.20 Aligned_cols=115 Identities=8% Similarity=0.160 Sum_probs=66.9
Q ss_pred CeEEEEE--ccC-CC-EEEEeecCCeEEEEeccc---c----ceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEE
Q psy17863 210 PIVDACF--TRD-CQ-CILTCSTDECLRLFDKAT---G----ELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYK 278 (341)
Q Consensus 210 ~i~~~~~--~~~-~~-~l~~~~~d~~i~i~d~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 278 (341)
.+..+|+ ++. |. ++++...+|.+..|.+.. + +.++.+.... .+.. |+++...+.|+.+-++..|..
T Consensus 129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~-q~EG--CVvDde~~~LyisEE~~Giw~ 205 (353)
T d1h6la_ 129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNS-QTEG--MAADDEYGSLYIAEEDEAIWK 205 (353)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSS-CEEE--EEEETTTTEEEEEETTTEEEE
T ss_pred cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCC-ccce--EEEeCCCCcEEEecCccceEE
Confidence 3556666 554 44 566777789998887632 2 3445554333 2333 378888889999988766655
Q ss_pred EeeeC--CCceEEEE---eeeeccceEEEEEc--CCCc-EEEEeC--CCcEEEEEcccc
Q psy17863 279 WQLVD--SSQISTLI---HSVGKAVVNSLCSH--PTRK-HIMSAC--GNNVKLWTAEED 327 (341)
Q Consensus 279 wd~~~--~~~~~~~~---~~~~~~~v~~~~~~--~~~~-~l~~~~--d~~i~vw~~~~~ 327 (341)
++... ......+. .......+..|+.- +++. +|++++ +++..+|+....
T Consensus 206 ~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 206 FSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 55431 22222221 11124456666643 2322 555555 899999998764
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.10 E-value=0.49 Score=36.22 Aligned_cols=101 Identities=10% Similarity=0.059 Sum_probs=55.7
Q ss_pred CCeEEEEEccCCCEEEEee-----------------cCCeEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEe-
Q psy17863 209 EPIVDACFTRDCQCILTCS-----------------TDECLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCG- 270 (341)
Q Consensus 209 ~~i~~~~~~~~~~~l~~~~-----------------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 270 (341)
...+.+++..++.++++-. .-+.+..||....+.+ ..+ -.....+ +++|++++|+.+
T Consensus 150 ~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~--~~~-l~~pNGI--~~s~d~~~lyVa~ 224 (340)
T d1v04a_ 150 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV--AEG-FDFANGI--NISPDGKYVYIAE 224 (340)
T ss_dssp SSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEE--EEE-ESSEEEE--EECTTSSEEEEEE
T ss_pred cCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEE--cCC-CCcccee--EECCCCCEEEEEe
Confidence 4467788888888777631 1233444443322221 121 1223344 889999876554
Q ss_pred cCCCcEEEEeeeCCCceEEEEeeeeccceEEEEEcC-CCcEEEEe
Q psy17863 271 SSDGKIYKWQLVDSSQISTLIHSVGKAVVNSLCSHP-TRKHIMSA 314 (341)
Q Consensus 271 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 314 (341)
+..++|++|++.....+.......-....-.+.+.+ +|.+.+++
T Consensus 225 t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 225 LLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred CCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 567889999987554433322112334556677765 45555544
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.45 E-value=0.79 Score=35.53 Aligned_cols=175 Identities=6% Similarity=-0.016 Sum_probs=99.1
Q ss_pred CcEEEEEEccCCCEEEEEeCCCeEEEEcCCC-----------cceeeEecCcccceeEEEEecCCCEEEEecCCCcEEEE
Q psy17863 14 GAIRAVRFNVDGSYCLTCGSDKKIKLWNPYR-----------NLLLKTYGGHAHEVNDATAACDSSQIASGASDKSVILW 82 (341)
Q Consensus 14 ~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 82 (341)
...+-++.++...+++.|+.++ ++|-.+.. ....... .-..|..++|+.+ .|+.. .++.+..+
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v~-~~~~l~~~ 110 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLVS-TRNALYSL 110 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEEE-ESSEEEEE
T ss_pred cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC--EEEEE-eCCCEEEE
Confidence 3566788888777888888775 56664211 1111111 1235888999744 45554 34568888
Q ss_pred ECCCCceeeeecccCccEEEEEEcCCCcEEEEecCCCeEEEEEecCCCCcCeEEeecCCCceEEEeeccCeEEEEEccCC
Q psy17863 83 EVTTGQPVRRWREHASKVTCVKFNEDSSVVISGSQDNTVMMWDVKSRSHHPIQCCLDSKDSQIFCGSSDGKIYKWQLVDS 162 (341)
Q Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~ 162 (341)
+..+-........-..++..+.++|. .++....++.+.++++...+...+.. + +.-++
T Consensus 111 ~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~-----------~-----v~~~~---- 168 (381)
T d1xipa_ 111 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQ-----------N-----VTSFD---- 168 (381)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEE-----------S-----EEEEE----
T ss_pred EeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccC-----------C-----cceEE----
Confidence 87765444444444567888888775 34555567777777776654211100 0 00011
Q ss_pred cceeeeEeeecCceEEEEEECCCCceEEEeCCCceEEEE-ccc-------ccCCCCeEEEEEccCCCEEEEe
Q psy17863 163 SQISTLIHSVGKAVVNSLCSHPTRKHIMSACGNNVKLWT-AEE-------DYGQEPIVDACFTRDCQCILTC 226 (341)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~-------~~~~~~i~~~~~~~~~~~l~~~ 226 (341)
-.....+++|++.++.++++.++...+.. +.. ......+.++.|-.+..++++-
T Consensus 169 ----------~~~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 169 ----------VTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp ----------ECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred ----------ecCCceEEEEeCCcEEEEEeCCCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 11336778888888888776554433321 111 0134567788888777766654
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.15 E-value=0.92 Score=35.14 Aligned_cols=133 Identities=11% Similarity=0.022 Sum_probs=82.6
Q ss_pred eEEEEEECCCCceEEEeCCCceEEEEccccc----------------CCCCeEEEEEccCCCEEEEeecCCeEEEEeccc
Q psy17863 176 VVNSLCSHPTRKHIMSACGNNVKLWTAEEDY----------------GQEPIVDACFTRDCQCILTCSTDECLRLFDKAT 239 (341)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------------~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 239 (341)
...-+++++...++++++...+.+.....-. .-..|..++|+.+ .+++. .++.+..++...
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~~~~ 114 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGD--QVLVS-TRNALYSLDLEE 114 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETT--EEEEE-ESSEEEEEESSS
T ss_pred ccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCC--EEEEE-eCCCEEEEEeec
Confidence 4567788888888888877778887754310 1234788888755 34444 455677777654
Q ss_pred cceeeeecCcccceeEEEEEeCCCCCEEEEecCCCcEEEEeeeCCCceEEEE---eeeeccceEEEEEcCCCcEEEEeC
Q psy17863 240 GELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDGKIYKWQLVDSSQISTLI---HSVGKAVVNSLCSHPTRKHIMSAC 315 (341)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~ 315 (341)
-...........++..+ .+.|. .++....+|.+.++++.+++...... ...-.+.+.+++|++.|+.++++.
T Consensus 115 l~~~~~~~~~~~~~~~~--~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 115 LSEFRTVTSFEKPVFQL--KNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp TTCEEEEEECSSCEEEE--EECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred cccccccccccccccce--ecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence 33332222223334444 45553 56667778999999998876433221 012246688899999888888775
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=93.59 E-value=1.1 Score=34.22 Aligned_cols=102 Identities=8% Similarity=0.247 Sum_probs=55.9
Q ss_pred cCCCEEEEEeCCCeEEEEcCCCcceeeEecCcccceeEEEEec----CC--CEEEEec-C-C--CcEEEEECCC-Cceee
Q psy17863 23 VDGSYCLTCGSDKKIKLWNPYRNLLLKTYGGHAHEVNDATAAC----DS--SQIASGA-S-D--KSVILWEVTT-GQPVR 91 (341)
Q Consensus 23 ~~~~~l~t~~~dg~i~iw~~~~~~~~~~~~~~~~~v~~~~~~~----~~--~~l~~~~-~-d--g~i~iw~~~~-~~~~~ 91 (341)
|+..+++....++-|.+||+ +|+.+..+. .+.++.+..-. ++ .-+++++ . + .+|.+|.+.. ...+.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~ 114 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ 114 (353)
T ss_dssp GGGCEEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred cCccEEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence 34567777777777999998 477777764 34566655432 22 2244444 2 2 3577887753 22233
Q ss_pred eeccc-------CccEEEEEE--cCC-Cc-EEEEecCCCeEEEEEec
Q psy17863 92 RWREH-------ASKVTCVKF--NED-SS-VVISGSQDNTVMMWDVK 127 (341)
Q Consensus 92 ~~~~~-------~~~v~~~~~--~~~-~~-~l~~~~~d~~i~iwd~~ 127 (341)
.+... ...+..+++ ++. +. +++....+|.+..|.+.
T Consensus 115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~ 161 (353)
T d1h6la_ 115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELN 161 (353)
T ss_dssp ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEE
T ss_pred cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEE
Confidence 22211 123455555 442 33 45555666777666654
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.29 E-value=1 Score=32.97 Aligned_cols=65 Identities=9% Similarity=-0.025 Sum_probs=31.8
Q ss_pred CCCEEEEeecCC-----eEEEEeccccceeeeecCcccceeEEEEEeCCCCCEEEEecCCC-----cEEEEeeeCCC
Q psy17863 219 DCQCILTCSTDE-----CLRLFDKATGELLEEYKGHKSGDFRIECCLDSKDSQIFCGSSDG-----KIYKWQLVDSS 285 (341)
Q Consensus 219 ~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~ 285 (341)
++++++.++.++ ....+|..+.+....-.......... ++. .++++++.|+.++ .+.+||+.+.+
T Consensus 195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~-~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 195 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALG-ITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE-EEE-ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eeeEEEecCccccccccceeeeeecceeeecccCccCcccceE-EEE-ECCEEEEEecCCCCeecceEEEEECCCCE
Confidence 445566655442 45667766544322111111111111 122 3577788777554 37788877653
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=88.74 E-value=4.6 Score=31.97 Aligned_cols=54 Identities=7% Similarity=0.045 Sum_probs=38.6
Q ss_pred ccceeEEEEecCCCEEEEecCCCcEEEEECCCCceee--eec------ccCccEEEEEEcCC
Q psy17863 55 AHEVNDATAACDSSQIASGASDKSVILWEVTTGQPVR--RWR------EHASKVTCVKFNED 108 (341)
Q Consensus 55 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~------~~~~~v~~~~~~~~ 108 (341)
-..-.+|+|.||++++++--..|.|++++..+++... .+. .-......++|+|+
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 3456799999999988877667999999987765422 111 12356788999984
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.46 E-value=3.3 Score=30.02 Aligned_cols=63 Identities=8% Similarity=0.142 Sum_probs=31.0
Q ss_pred CCCEEEEecCCC-----cEEEEeeeCCCceEEEEeeeeccceEEEEEcCCCcEEEEeC-CC-----cEEEEEcccc
Q psy17863 263 KDSQIFCGSSDG-----KIYKWQLVDSSQISTLIHSVGKAVVNSLCSHPTRKHIMSAC-GN-----NVKLWTAEED 327 (341)
Q Consensus 263 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~-----~i~vw~~~~~ 327 (341)
+++.++.|+.++ ....+|..+.+.. .+........-.+++. .++++++.|+ ++ .+.+||+.+.
T Consensus 195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 195 HNCIYAAGGYDGQDQLNSVERYDVETETWT-FVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 268 (288)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEE-ECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred eeeEEEecCccccccccceeeeeecceeee-cccCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEECCCC
Confidence 355666665443 4566665544322 2211011111112222 3678888876 44 3778888764
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=87.55 E-value=5.5 Score=31.50 Aligned_cols=54 Identities=17% Similarity=0.036 Sum_probs=38.5
Q ss_pred CCcEEEEEEccCCCEEEEEeCCCeEEEEcCCCcceee--Eec------CcccceeEEEEecC
Q psy17863 13 QGAIRAVRFNVDGSYCLTCGSDKKIKLWNPYRNLLLK--TYG------GHAHEVNDATAACD 66 (341)
Q Consensus 13 ~~~v~~~~~~~~~~~l~t~~~dg~i~iw~~~~~~~~~--~~~------~~~~~v~~~~~~~~ 66 (341)
-..-++|+|.|||++|++--..|.|++++..+++... .+. .-.+....++++|+
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 3566799999999988876557999999877765332 221 12356788999984
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=85.15 E-value=4.5 Score=28.19 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=22.6
Q ss_pred cceEEEEEcCCCcEEEEeC-CCcEEEEEcc
Q psy17863 297 AVVNSLCSHPTRKHIMSAC-GNNVKLWTAE 325 (341)
Q Consensus 297 ~~v~~~~~~~~~~~l~~~~-d~~i~vw~~~ 325 (341)
-.|+-+-+.|++++++.+- ||.=++|.-.
T Consensus 238 ~~I~~~~Y~Pdd~L~iiakrdG~s~lF~nG 267 (313)
T d2hu7a1 238 TAITWLGYLPDGRLAVVARREGRSAVFIDG 267 (313)
T ss_dssp SEEEEEEECTTSCEEEEEEETTEEEEEETT
T ss_pred eEEEeeeeCCCCcEEEEEecCCchheeecc
Confidence 3566677899999888888 9988888643
|