Psyllid ID: psy17879

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
Protein Sequence
MNVVTFKDLIQPYSLFNLHPQLTLFSTFTVSNGSIYDLHSNIHPHHHVPNGGAPELPVSSTYAGSLGYAASYSNHIQRSLPNMSQPMSLEPPKIYPYHLLIITNYRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccHHHHHHHHcccHHHHHccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccHHEEEEEcccccccccHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MNVVTFkdliqpyslfnlhpqltlfstftvsngsiydlhsnihphhhvpnggapelpvsstyagslgyaasysnhiqrslpnmsqpmsleppkiypyhLLIItnyrlppdvdrknlerhlsdvEFETLFLCTraefyrlptwrrndLKKRARLF
Flexible Loop (DISEMBL)
MNVVTFKDLIQPYSLFNLHPQLTLFSTFTVSNGSIYDLHSNIHPHHHVPNGGAPELPVSSTYAGSLGYAASYSNHIQRSLPNMSQPMSLEPPKIYPYHLLIITNYRLPPDVDRKNLERHLSDVEFETlflctraefyrlptwrrndlkkrarlf
Low Complexity Region (SEG)
MNVVTFKDLIQPYSLFNLHPQLTLFSTFTVSNGSIYDLHSNIHPHHHVPNGGAPELPVSSTYAGSLGYAASYSNHIQRSLPNMSQPMSLEPPKIYPYHLLIITNYRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF
Disordered region (IsUnstruct)
**VVTFKDLIQPYSLFNLHPQLTLFSTFTVSNGSIYDLHSNIHPHHHV************TYAGSLGYAAS*********************KIYPYHLLIITNYRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRR**********
Disordered Region (DISOPRED)
**********************************************************************************************YPYHLLIITNYRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF
Disordered Region (DISEMBL)
MNVVTFKDLIQPYSLFNLHPQLTLFSTFTVSNGSIYDLHSNIHPHHHVPNGGAPELPVSSTYAGSLGYAASYSNHIQRSLPNMSQPMSLEPPKIYPYHLLIITNYRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF
Disordered Region (DISPRO)
*NVVTFKDLIQPYSLFNLHPQLTLFSTFTVSNGSIYDLHSNIHP***************************YSNHIQRSLPNMSQPMSLEPPKIYPYHLLIITNYRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNVVTFKDLIQPYSLFNLHPQLTLFSTFTVSNGSIYDLHSNIHPHHHVPNGGAPELPVSSTYAGSLGYAASYSNHIQRSLPNMSQPMSLEPPKIYPYHLLIITNYRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	154	2.2.26 [Sep-21-2011]
Q69ZX8	682	Actin-binding LIM protein	yes	N/A	0.402	0.090	0.6	3e-14
O94929	683	Actin-binding LIM protein	yes	N/A	0.402	0.090	0.6	5e-14
Q9WV69	405	Dematin OS=Mus musculus G	no	N/A	0.746	0.283	0.390	2e-13
Q6H8Q1	611	Actin-binding LIM protein	no	N/A	0.402	0.101	0.584	2e-13
Q6KC51	612	Actin-binding LIM protein	no	N/A	0.402	0.101	0.584	3e-13
Q8BL65	612	Actin-binding LIM protein	no	N/A	0.402	0.101	0.584	3e-13
Q5R4B6	405	Dematin OS=Pongo abelii G	no	N/A	0.402	0.153	0.523	7e-13
Q08495	405	Dematin OS=Homo sapiens G	no	N/A	0.402	0.153	0.523	7e-13
Q08DM1	406	Dematin OS=Bos taurus GN=	no	N/A	0.402	0.152	0.523	1e-12
O14639	778	Actin-binding LIM protein	no	N/A	0.454	0.089	0.468	2e-12

>sp|Q69ZX8|ABLM3_MOUSE Actin-binding LIM protein 3 OS=Mus musculus GN=Ablim3 PE=1 SV=2

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 46/65 (70%), Gaps = 3/65 (4%)

Query: 93  KIYPYHLLIITNY---RLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
           KIYPY LL++T     RLP DVDR  LERHLS  EF  +F  T +EF RL  W+RN+LKK
Sbjct: 618 KIYPYELLLVTTRGRNRLPKDVDRTRLERHLSQEEFYQVFGMTISEFERLALWKRNELKK 677

Query: 150 RARLF 154
           +ARLF
Sbjct: 678 QARLF 682

May act as scaffold protein. May stimulate ABRA activity and ABRA-dependent SRF transcriptional activity.
Mus musculus (taxid: 10090)

>sp|O94929|ABLM3_HUMAN Actin-binding LIM protein 3 OS=Homo sapiens GN=ABLIM3 PE=1 SV=3

 Score = 77.0 bits (188), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 46/65 (70%), Gaps = 3/65 (4%)

Query: 93  KIYPYHLLIITNY---RLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
           KIYPY LL++T     RLP DVDR  LERHLS  EF  +F  T +EF RL  W+RN+LKK
Sbjct: 619 KIYPYELLLVTTRGRNRLPKDVDRTRLERHLSQEEFYQVFGMTISEFDRLALWKRNELKK 678

Query: 150 RARLF 154
           +ARLF
Sbjct: 679 QARLF 683

May act as scaffold protein. May stimulate ABRA activity and ABRA-dependent SRF transcriptional activity.

Homo sapiens (taxid: 9606)

>sp|Q9WV69|DEMA_MOUSE Dematin OS=Mus musculus GN=Epb49 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 66/128 (51%), Gaps = 13/128 (10%)

Query: 38  LHSNIHPHHHVPNGG--------APELPVSSTYAGSLGYAASYSNHIQRSLPNMSQPMSL 89
           LHS       +P+ G        + E   S + AGS G         +    N S P  L
Sbjct: 280 LHSGTSKSSSLPSYGRTTLSRLQSTEFSPSGSEAGSPGLQNGEGQRGRMDRGN-SLPCVL 338

Query: 90  EPPKIYPYHLLIITNY---RLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRND 146
           E  KIYPY +L++TN    +LPP VDR  LERHLS  +F  +F  +  EF +L  W+RN+
Sbjct: 339 EQ-KIYPYEMLVVTNKGRTKLPPGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNE 397

Query: 147 LKKRARLF 154
           LKK+A LF
Sbjct: 398 LKKKASLF 405

Actin-bundling protein. May function in mitogen-activated protein kinase pathway.

Mus musculus (taxid: 10090)

>sp|Q6H8Q1|ABLM2_HUMAN Actin-binding LIM protein 2 OS=Homo sapiens GN=ABLIM2 PE=1 SV=2

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 45/65 (69%), Gaps = 3/65 (4%)

Query: 93  KIYPYHLLIITN---YRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
           KIYPY  LI+TN    +LP DVDR  LERHLS  EF+ +F  +  EF RL  W+RNDLKK
Sbjct: 547 KIYPYDSLIVTNRIRVKLPKDVDRTRLERHLSPEEFQEVFGMSIEEFDRLALWKRNDLKK 606

Query: 150 RARLF 154
           +A LF
Sbjct: 607 KALLF 611

May act as scaffold protein. May stimulate ABRA activity and ABRA-dependent SRF transcriptional activity.

Homo sapiens (taxid: 9606)

>sp|Q6KC51|ABLM2_RAT Actin-binding LIM protein 2 OS=Rattus norvegicus GN=Ablim2 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 45/65 (69%), Gaps = 3/65 (4%)

Query: 93  KIYPYHLLIITN---YRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
           KIYPY  LI+TN    +LP DVDR  LERHLS  EF+ +F  +  EF RL  W+RNDLKK
Sbjct: 548 KIYPYDSLIVTNRIRVKLPKDVDRTRLERHLSPEEFQEVFGMSIEEFDRLALWKRNDLKK 607

Query: 150 RARLF 154
           +A LF
Sbjct: 608 KALLF 612

May act as scaffold protein. May stimulate ABRA activity and ABRA-dependent SRF transcriptional activity.

Rattus norvegicus (taxid: 10116)

>sp|Q8BL65|ABLM2_MOUSE Actin-binding LIM protein 2 OS=Mus musculus GN=Ablim2 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 38/65 (58%), Positives = 45/65 (69%), Gaps = 3/65 (4%)

Query: 93  KIYPYHLLIITN---YRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
           KIYPY  LI+TN    +LP DVDR  LERHLS  EF+ +F  +  EF RL  W+RNDLKK
Sbjct: 548 KIYPYDSLIVTNRIRVKLPKDVDRTRLERHLSPEEFQEVFGMSIEEFDRLALWKRNDLKK 607

Query: 150 RARLF 154
           +A LF
Sbjct: 608 KALLF 612

May act as scaffold protein. May stimulate ABRA activity and ABRA-dependent SRF transcriptional activity.

Mus musculus (taxid: 10090)

>sp|Q5R4B6|DEMA_PONAB Dematin OS=Pongo abelii GN=EPB49 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 45/65 (69%), Gaps = 3/65 (4%)

Query: 93  KIYPYHLLIITNY---RLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
           KIYPY +L++TN    +LPP VDR  LERHLS  +F  +F  +  EF +L  W+RN+LKK
Sbjct: 341 KIYPYEMLVVTNKGRTKLPPGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKK 400

Query: 150 RARLF 154
           +A LF
Sbjct: 401 KASLF 405

Actin-bundling protein. May function in mitogen-activated protein kinase pathway.

Pongo abelii (taxid: 9601)

>sp|Q08495|DEMA_HUMAN Dematin OS=Homo sapiens GN=EPB49 PE=1 SV=3

 Score = 73.2 bits (178), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 45/65 (69%), Gaps = 3/65 (4%)

Query: 93  KIYPYHLLIITNY---RLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
           KIYPY +L++TN    +LPP VDR  LERHLS  +F  +F  +  EF +L  W+RN+LKK
Sbjct: 341 KIYPYEMLVVTNKGRTKLPPGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKK 400

Query: 150 RARLF 154
           +A LF
Sbjct: 401 KASLF 405

Actin-bundling protein. May function in mitogen-activated protein kinase pathway.

Homo sapiens (taxid: 9606)

>sp|Q08DM1|DEMA_BOVIN Dematin OS=Bos taurus GN=EPB49 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/65 (52%), Positives = 45/65 (69%), Gaps = 3/65 (4%)

Query: 93  KIYPYHLLIITNY---RLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
           KIYPY +L++TN    +LPP VDR  LERHLS  +F  +F  +  EF +L  W+RN+LKK
Sbjct: 342 KIYPYEMLVVTNRGRTKLPPGVDRMRLERHLSAEDFSRVFSMSPEEFGKLALWKRNELKK 401

Query: 150 RARLF 154
           +A LF
Sbjct: 402 KASLF 406

Actin-bundling protein. May function in mitogen-activated protein kinase pathway.

Bos taurus (taxid: 9913)

>sp|O14639|ABLM1_HUMAN Actin-binding LIM protein 1 OS=Homo sapiens GN=ABLIM1 PE=1 SV=3

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 9/79 (11%)

Query: 79  SLPNMSQPMSLEPPKIYPYHLLIITNY---RLPPDVDRKNLERHLSDVEFETLFLCTRAE 135
           S+PNM +P      KI+PY +L++TN    ++  +VDR  LERHL+   F  +F  +  E
Sbjct: 706 SMPNMLEP------KIFPYEMLMVTNRGRNKILREVDRTRLERHLAPEVFREIFGMSIQE 759

Query: 136 FYRLPTWRRNDLKKRARLF 154
           F RLP WRRND+KK+A+LF
Sbjct: 760 FDRLPLWRRNDMKKKAKLF 778

May act as scaffold protein (By similarity). May play a role in the development of the retina. Has been suggested to play a role in axon guidance.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
242017898	785	ablim, putative [Pediculus humanus corpo	0.642	0.126	0.693	8e-35
270013886	806	hypothetical protein TcasGA2_TC012552 [T	0.649	0.124	0.676	3e-33
383856758	789	PREDICTED: actin-binding LIM protein 1-l	0.759	0.148	0.582	1e-32
328792358	789	PREDICTED: actin-binding LIM protein 1-l	0.759	0.148	0.582	1e-32
380026717	824	PREDICTED: uncharacterized protein LOC10	0.759	0.141	0.582	2e-32
195113929	846	GI21937 [Drosophila mojavensis] gi|19391	0.649	0.118	0.663	6e-32
195572188	839	GD20771 [Drosophila simulans] gi|1942000	0.649	0.119	0.663	1e-31
194902859	844	GG17342 [Drosophila erecta] gi|190652478	0.649	0.118	0.663	1e-31
195499533	845	GE24748 [Drosophila yakuba] gi|194183090	0.649	0.118	0.663	1e-31
195330318	839	GM26228 [Drosophila sechellia] gi|194120	0.649	0.119	0.663	1e-31

>gi|242017898|ref|XP_002429421.1| ablim, putative [Pediculus humanus corporis] gi|212514347|gb|EEB16683.1| ablim, putative [Pediculus humanus corporis]

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 70/101 (69%), Positives = 84/101 (83%), Gaps = 2/101 (1%)

Query: 54  PELPVSSTYAGSLGYAASYSNHIQRSLPNMSQPMSLEPPKIYPYHLLIITNYRLPPDVDR 113
           P++P+S+T+ G L YA SYS H++RSLP +S  MS EPPKIYPYHLL+ITNYRLP DVDR
Sbjct: 687 PDMPMSTTFQGGLRYA-SYSPHLRRSLPTLSH-MSNEPPKIYPYHLLVITNYRLPADVDR 744

Query: 114 KNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
            NLERHLSD EFE  F C+RAEFYR+P WRRND+K+R +LF
Sbjct: 745 CNLERHLSDAEFEQKFQCSRAEFYRMPQWRRNDMKRRLKLF 785

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013886|gb|EFA10334.1| hypothetical protein TcasGA2_TC012552 [Tribolium castaneum]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 83/102 (81%), Gaps = 2/102 (1%)

Query: 55  ELPVSSTYAGSLG-YAASYSNHIQRSLPNMSQPMSL-EPPKIYPYHLLIITNYRLPPDVD 112
           E+PVS+TY G+LG Y   YS+ ++RSLPNM+  M + EP KIYPYHLL+ITNYRLP DVD
Sbjct: 705 EMPVSATYMGALGRYPGGYSSQVRRSLPNMAHTMLINEPAKIYPYHLLVITNYRLPSDVD 764

Query: 113 RKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
           R NLERHLSD EFE +F  +R +FYRLP WRRN+LK+RARLF
Sbjct: 765 RCNLERHLSDAEFEAIFQVSRTDFYRLPQWRRNELKRRARLF 806

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856758|ref|XP_003703874.1| PREDICTED: actin-binding LIM protein 1-like [Megachile rotundata]

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/127 (58%), Positives = 90/127 (70%), Gaps = 10/127 (7%)

Query: 30  VSNGSIYDLHSNIHPHHHVPNGGAPELPVSSTYAGSLG--YAASYSNHIQRSLPNMSQPM 87
           +S GSI D+         + +GG   LP S+TY G LG    +   +H++RSLP+M    
Sbjct: 671 ISTGSITDVDRRA-----LNDGGM--LPSSTTYTGGLGSVVGSHGGHHVRRSLPDMGTAP 723

Query: 88  SLEPPKIYPYHLLIITNYRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDL 147
           S EPPK+YPYHLL+ITNYRLP DVDR NLERHLSD EFE +  CTRAEFYRLP WRRN++
Sbjct: 724 S-EPPKLYPYHLLVITNYRLPADVDRCNLERHLSDAEFEAVLQCTRAEFYRLPQWRRNEI 782

Query: 148 KKRARLF 154
           K+RARLF
Sbjct: 783 KRRARLF 789

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328792358|ref|XP_001122092.2| PREDICTED: actin-binding LIM protein 1-like [Apis mellifera]

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/127 (58%), Positives = 90/127 (70%), Gaps = 10/127 (7%)

Query: 30  VSNGSIYDLHSNIHPHHHVPNGGAPELPVSSTYAGSLG--YAASYSNHIQRSLPNMSQPM 87
           +S GSI D+         + +GG   LP S+TY G LG    +   +H++RSLP+M    
Sbjct: 671 ISTGSITDVDRRA-----LNDGGM--LPSSTTYTGGLGSVVGSHGGHHVRRSLPDMGTAP 723

Query: 88  SLEPPKIYPYHLLIITNYRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDL 147
           S EPPK+YPYHLL+ITNYRLP DVDR NLERHLSD EFE +  CTRAEFYRLP WRRN++
Sbjct: 724 S-EPPKLYPYHLLVITNYRLPADVDRCNLERHLSDAEFEAVLQCTRAEFYRLPQWRRNEI 782

Query: 148 KKRARLF 154
           K+RARLF
Sbjct: 783 KRRARLF 789

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026717|ref|XP_003697091.1| PREDICTED: uncharacterized protein LOC100871356 [Apis florea]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/127 (58%), Positives = 90/127 (70%), Gaps = 10/127 (7%)

Query: 30  VSNGSIYDLHSNIHPHHHVPNGGAPELPVSSTYAGSLG--YAASYSNHIQRSLPNMSQPM 87
           +S GSI D+         + +GG   LP S+TY G LG    +   +H++RSLP+M    
Sbjct: 706 ISTGSITDVDRRA-----LNDGGM--LPSSTTYTGGLGSVVGSHGGHHVRRSLPDMGTAP 758

Query: 88  SLEPPKIYPYHLLIITNYRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDL 147
           S EPPK+YPYHLL+ITNYRLP DVDR NLERHLSD EFE +  CTRAEFYRLP WRRN++
Sbjct: 759 S-EPPKLYPYHLLVITNYRLPADVDRCNLERHLSDAEFEAVLQCTRAEFYRLPQWRRNEI 817

Query: 148 KKRARLF 154
           K+RARLF
Sbjct: 818 KRRARLF 824

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195113929|ref|XP_002001520.1| GI21937 [Drosophila mojavensis] gi|193918114|gb|EDW16981.1| GI21937 [Drosophila mojavensis]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 82/101 (81%), Gaps = 1/101 (0%)

Query: 55  ELPVSSTYAGSLGYAASYSNHIQRSLPNMSQPMSL-EPPKIYPYHLLIITNYRLPPDVDR 113
           +LPVSSTY+G+L Y    +  I+RSLPNM+  M + EP KIYPYH+L+ITNYRLP DVDR
Sbjct: 746 DLPVSSTYSGALSYHYPQAGLIRRSLPNMAHSMLVHEPAKIYPYHILLITNYRLPSDVDR 805

Query: 114 KNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
            NLERHLSD+EFE +  CTR+EFYRLP WRRN+LK+R +LF
Sbjct: 806 CNLERHLSDIEFEHILQCTRSEFYRLPQWRRNELKRRVKLF 846

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195572188|ref|XP_002104078.1| GD20771 [Drosophila simulans] gi|194200005|gb|EDX13581.1| GD20771 [Drosophila simulans]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 80/101 (79%), Gaps = 1/101 (0%)

Query: 55  ELPVSSTYAGSLGYAASYSNHIQRSLPNMSQPMSL-EPPKIYPYHLLIITNYRLPPDVDR 113
           +LP SSTY+G+L Y    +  I+RSLPNMS  M + EP KIYPYHLL+ITNYRLP DVDR
Sbjct: 739 DLPASSTYSGALSYHYPQAGLIRRSLPNMSHSMLVHEPAKIYPYHLLLITNYRLPSDVDR 798

Query: 114 KNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
            NLERHLSD+EFE +  C R+EFYRLP WRRN+LK+R +LF
Sbjct: 799 CNLERHLSDIEFEHILQCARSEFYRLPQWRRNELKRRVKLF 839

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194902859|ref|XP_001980775.1| GG17342 [Drosophila erecta] gi|190652478|gb|EDV49733.1| GG17342 [Drosophila erecta]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 80/101 (79%), Gaps = 1/101 (0%)

Query: 55  ELPVSSTYAGSLGYAASYSNHIQRSLPNMSQPMSL-EPPKIYPYHLLIITNYRLPPDVDR 113
           +LP SSTY+G+L Y    +  I+RSLPNMS  M + EP KIYPYHLL+ITNYRLP DVDR
Sbjct: 744 DLPASSTYSGALSYHYPQAGLIRRSLPNMSHSMLVHEPAKIYPYHLLLITNYRLPSDVDR 803

Query: 114 KNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
            NLERHLSD+EFE +  C R+EFYRLP WRRN+LK+R +LF
Sbjct: 804 CNLERHLSDIEFEHILQCARSEFYRLPQWRRNELKRRVKLF 844

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195499533|ref|XP_002096989.1| GE24748 [Drosophila yakuba] gi|194183090|gb|EDW96701.1| GE24748 [Drosophila yakuba]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 80/101 (79%), Gaps = 1/101 (0%)

Query: 55  ELPVSSTYAGSLGYAASYSNHIQRSLPNMSQPMSL-EPPKIYPYHLLIITNYRLPPDVDR 113
           +LP SSTY+G+L Y    +  I+RSLPNMS  M + EP KIYPYHLL+ITNYRLP DVDR
Sbjct: 745 DLPASSTYSGALSYHYPQAGLIRRSLPNMSHSMLVHEPAKIYPYHLLLITNYRLPSDVDR 804

Query: 114 KNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
            NLERHLSD+EFE +  C R+EFYRLP WRRN+LK+R +LF
Sbjct: 805 CNLERHLSDIEFEHILQCARSEFYRLPQWRRNELKRRVKLF 845

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195330318|ref|XP_002031851.1| GM26228 [Drosophila sechellia] gi|194120794|gb|EDW42837.1| GM26228 [Drosophila sechellia]

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 80/101 (79%), Gaps = 1/101 (0%)

Query: 55  ELPVSSTYAGSLGYAASYSNHIQRSLPNMSQPMSL-EPPKIYPYHLLIITNYRLPPDVDR 113
           +LP SSTY+G+L Y    +  I+RSLPNMS  M + EP KIYPYHLL+ITNYRLP DVDR
Sbjct: 739 DLPASSTYSGALSYHYPQAGLIRRSLPNMSHSMLVHEPAKIYPYHLLLITNYRLPSDVDR 798

Query: 114 KNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
            NLERHLSD+EFE +  C R+EFYRLP WRRN+LK+R +LF
Sbjct: 799 CNLERHLSDIEFEHILQCARSEFYRLPQWRRNELKRRVKLF 839

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
FB|FBgn0260463	806	Unc-115b [Drosophila melanogas	0.662	0.126	0.657	1.1e-31
FB|FBgn0051352	844	Unc-115a [Drosophila melanogas	0.662	0.120	0.657	1.2e-31
UNIPROTKB|F1NC68	609	Gga.10869 "Uncharacterized pro	0.402	0.101	0.584	6.5e-15
RGD|1565118	682	Ablim3 "actin binding LIM prot	0.402	0.090	0.6	1.2e-14
MGI|MGI:2442582	682	Ablim3 "actin binding LIM prot	0.402	0.090	0.6	1.5e-14
UNIPROTKB|A5PKK3	683	ABLIM3 "ABLIM3 protein" [Bos t	0.402	0.090	0.6	1.9e-14
UNIPROTKB|F1PU29	683	ABLIM3 "Uncharacterized protei	0.402	0.090	0.6	1.9e-14
UNIPROTKB|O94929	683	ABLIM3 "Actin-binding LIM prot	0.402	0.090	0.6	1.9e-14
UNIPROTKB|F1RLA7	688	ABLIM3 "Uncharacterized protei	0.402	0.090	0.6	1.9e-14
UNIPROTKB|F1N6Q2	616	F1N6Q2 "Uncharacterized protei	0.402	0.100	0.584	3.7e-14

FB|FBgn0260463 Unc-115b [Drosophila melanogaster (taxid:7227)]

 Score = 357 (130.7 bits), Expect = 1.1e-31, P = 1.1e-31
 Identities = 69/105 (65%), Positives = 82/105 (78%)

Query:    51 GGAPELPVSSTYAGSLGYAASYSNHIQRSLPNMSQPMSL-EPPKIYPYHLLIITNYRLPP 109
             GG  +LP SSTY+G+L Y    +  I+RSLPNMS  M + EP KIYPYHLL+ITNYRLP 
Sbjct:   704 GG--DLPASSTYSGALSYHYPQAGLIRRSLPNMSHSMLVHEPAKIYPYHLLLITNYRLPS 761

Query:   110 DVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
             DVDR NLERHLSD+EFE +  C R+EFYRLP WRRN+LK+R +LF
Sbjct:   762 DVDRCNLERHLSDIEFEHILQCARSEFYRLPQWRRNELKRRVKLF 806

GO:0003779 "actin binding" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0051352 Unc-115a [Drosophila melanogaster (taxid:7227)]

 Score = 357 (130.7 bits), Expect = 1.2e-31, P = 1.2e-31
 Identities = 69/105 (65%), Positives = 82/105 (78%)

Query:    51 GGAPELPVSSTYAGSLGYAASYSNHIQRSLPNMSQPMSL-EPPKIYPYHLLIITNYRLPP 109
             GG  +LP SSTY+G+L Y    +  I+RSLPNMS  M + EP KIYPYHLL+ITNYRLP 
Sbjct:   742 GG--DLPASSTYSGALSYHYPQAGLIRRSLPNMSHSMLVHEPAKIYPYHLLLITNYRLPS 799

Query:   110 DVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
             DVDR NLERHLSD+EFE +  C R+EFYRLP WRRN+LK+R +LF
Sbjct:   800 DVDRCNLERHLSDIEFEHILQCARSEFYRLPQWRRNELKRRVKLF 844

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0072499 "photoreceptor cell axon guidance" evidence=IMP

GO:0003779 "actin binding" evidence=ISS

GO:0007411 "axon guidance" evidence=IMP

UNIPROTKB|F1NC68 Gga.10869 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 182 (69.1 bits), Expect = 6.5e-15, Sum P(2) = 6.5e-15
 Identities = 38/65 (58%), Positives = 45/65 (69%)

Query:    93 KIYPYHLLIITN---YRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
             KIYPY  LI+TN    +LP DVDR  LERHLS  EF+ +F  +  EF RL  W+RNDLKK
Sbjct:   545 KIYPYETLIVTNRVRVKLPKDVDRTRLERHLSPEEFQEVFKMSIEEFDRLALWKRNDLKK 604

Query:   150 RARLF 154
             +A LF
Sbjct:   605 KALLF 609

GO:0003779 "actin binding" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030016 "myofibril" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

RGD|1565118 Ablim3 "actin binding LIM protein family, member 3" [Rattus norvegicus (taxid:10116)]

 Score = 185 (70.2 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 39/65 (60%), Positives = 46/65 (70%)

Query:    93 KIYPYHLLIITNY---RLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
             KIYPY LL++T     RLP DVDR  LERHLS  EF  +F  T +EF RL  W+RN+LKK
Sbjct:   618 KIYPYELLLVTTRGRNRLPKDVDRTRLERHLSQEEFYQVFGMTISEFERLALWKRNELKK 677

Query:   150 RARLF 154
             +ARLF
Sbjct:   678 QARLF 682

GO:0003779 "actin binding" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

MGI|MGI:2442582 Ablim3 "actin binding LIM protein family, member 3" [Mus musculus (taxid:10090)]

 Score = 185 (70.2 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
 Identities = 39/65 (60%), Positives = 46/65 (70%)

Query:    93 KIYPYHLLIITNY---RLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
             KIYPY LL++T     RLP DVDR  LERHLS  EF  +F  T +EF RL  W+RN+LKK
Sbjct:   618 KIYPYELLLVTTRGRNRLPKDVDRTRLERHLSQEEFYQVFGMTISEFERLALWKRNELKK 677

Query:   150 RARLF 154
             +ARLF
Sbjct:   678 QARLF 682

GO:0003674 "molecular_function" evidence=ND

GO:0003779 "actin binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|A5PKK3 ABLIM3 "ABLIM3 protein" [Bos taurus (taxid:9913)]

 Score = 184 (69.8 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
 Identities = 39/65 (60%), Positives = 46/65 (70%)

Query:    93 KIYPYHLLIITNY---RLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
             KIYPY LL++T     RLP DVDR  LERHLS  EF  +F  T +EF RL  W+RN+LKK
Sbjct:   619 KIYPYELLLVTTRGRNRLPKDVDRTRLERHLSQEEFYQVFGMTISEFDRLALWKRNELKK 678

Query:   150 RARLF 154
             +ARLF
Sbjct:   679 QARLF 683

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|F1PU29 ABLIM3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 184 (69.8 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
 Identities = 39/65 (60%), Positives = 46/65 (70%)

Query:    93 KIYPYHLLIITNY---RLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
             KIYPY LL++T     RLP DVDR  LERHLS  EF  +F  T +EF RL  W+RN+LKK
Sbjct:   619 KIYPYELLLVTTRGRNRLPKDVDRTRLERHLSQEEFYQVFGMTISEFDRLALWKRNELKK 678

Query:   150 RARLF 154
             +ARLF
Sbjct:   679 QARLF 683

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|O94929 ABLIM3 "Actin-binding LIM protein 3" [Homo sapiens (taxid:9606)]

 Score = 184 (69.8 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
 Identities = 39/65 (60%), Positives = 46/65 (70%)

Query:    93 KIYPYHLLIITNY---RLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
             KIYPY LL++T     RLP DVDR  LERHLS  EF  +F  T +EF RL  W+RN+LKK
Sbjct:   619 KIYPYELLLVTTRGRNRLPKDVDRTRLERHLSQEEFYQVFGMTISEFDRLALWKRNELKK 678

Query:   150 RARLF 154
             +ARLF
Sbjct:   679 QARLF 683

GO:0003779 "actin binding" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008270 "zinc ion binding" evidence=NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0007411 "axon guidance" evidence=TAS

UNIPROTKB|F1RLA7 ABLIM3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 184 (69.8 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
 Identities = 39/65 (60%), Positives = 46/65 (70%)

Query:    93 KIYPYHLLIITNY---RLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
             KIYPY LL++T     RLP DVDR  LERHLS  EF  +F  T +EF RL  W+RN+LKK
Sbjct:   624 KIYPYELLLVTTRGRNRLPKDVDRTRLERHLSQEEFYQVFGMTISEFDRLALWKRNELKK 683

Query:   150 RARLF 154
             +ARLF
Sbjct:   684 QARLF 688

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|F1N6Q2 F1N6Q2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 179 (68.1 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
 Identities = 38/65 (58%), Positives = 45/65 (69%)

Query:    93 KIYPYHLLIITN---YRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
             KIYPY  LI+TN    +LP DVDR  LERHLS  EF+ +F  +  EF RL  W+RNDLKK
Sbjct:   552 KIYPYDALIVTNRIRVKLPKDVDRTRLERHLSPEEFQEVFGMSVEEFDRLALWKRNDLKK 611

Query:   150 RARLF 154
             +A LF
Sbjct:   612 KALLF 616

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0030016 "myofibril" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O94929	ABLM3_HUMAN	No assigned EC number	0.6	0.4025	0.0907	yes	N/A
Q69ZX8	ABLM3_MOUSE	No assigned EC number	0.6	0.4025	0.0909	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	154
smart00153	36	smart00153, VHP, Villin headpiece domain	1e-13
pfam02209	36	pfam02209, VHP, Villin headpiece domain	1e-13

>gnl|CDD|128458 smart00153, VHP, Villin headpiece domain

 Score = 60.8 bits (148), Expect = 1e-13
 Identities = 20/36 (55%), Positives = 27/36 (75%)

Query: 119 HLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
           +LSD +FE +F  TR EFY+LP W++N LKK+  LF
Sbjct: 1   YLSDEDFEEVFGMTREEFYKLPLWKQNQLKKKKGLF 36

Length = 36

>gnl|CDD|202157 pfam02209, VHP, Villin headpiece domain

 Score = 60.8 bits (148), Expect = 1e-13
 Identities = 19/36 (52%), Positives = 27/36 (75%)

Query: 119 HLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
           +LSD +FE +F  T+ EFY+LP W++N LKK+  LF
Sbjct: 1   YLSDEDFEEVFGMTKEEFYKLPAWKQNQLKKKLGLF 36

Length = 36

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	154
PF02209	36	VHP: Villin headpiece domain; InterPro: IPR003128	99.83
smart00153	36	VHP Villin headpiece domain.	99.82
KOG1044|consensus	670		99.81
KOG0443|consensus	827		99.77
KOG0445|consensus	919		99.76

>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia

Probab=99.83  E-value=2.8e-21  Score=121.62  Aligned_cols=36  Identities=56%  Similarity=1.041  Sum_probs=31.8

Q ss_pred             CCChHHHHHHhCCCHHHHhhChhHHHHHHhHhcCCC
Q psy17879        119 HLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF  154 (154)
Q Consensus       119 YLSDeDF~~VFGMsr~EF~~LP~WKQ~~LKK~~gLF  154 (154)
                      ||||+||++||||+|+||++||+|||+++||++|||
T Consensus         1 YLsd~dF~~vFgm~~~eF~~lP~WKq~~lKK~~~LF   36 (36)
T PF02209_consen    1 YLSDEDFEKVFGMSREEFYKLPKWKQNNLKKKAGLF   36 (36)
T ss_dssp             GS-HHHHHHHHSS-HHHHHHS-HHHHHHHHHHTTT-
T ss_pred             CcCHHHHHHHHCCCHHHHHHChHHHHHHHHHHhCCC
Confidence            899999999999999999999999999999999998

The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....

>smart00153 VHP Villin headpiece domain

Probab=99.82  E-value=8.2e-21  Score=119.31  Aligned_cols=36  Identities=56%  Similarity=0.991  Sum_probs=35.7

Q ss_pred             CCChHHHHHHhCCCHHHHhhChhHHHHHHhHhcCCC
Q psy17879        119 HLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF  154 (154)
Q Consensus       119 YLSDeDF~~VFGMsr~EF~~LP~WKQ~~LKK~~gLF  154 (154)
                      ||||+||++||||+|+||++||+|||+++||++|||
T Consensus         1 yLsdeeF~~vfgmsr~eF~~LP~WKq~~lKk~~~LF   36 (36)
T smart00153        1 YLSDEDFEEVFGMTREEFYKLPLWKQNQLKKKLGLF   36 (36)
T ss_pred             CCCHHHHHHHHCCCHHHHHhCcHhhHHHHHhhcCCC
Confidence            899999999999999999999999999999999998

>KOG1044|consensus

Probab=99.81  E-value=1.1e-20  Score=174.86  Aligned_cols=91  Identities=52%  Similarity=0.872  Sum_probs=78.2

Q ss_pred             ccccCCCcc----------cccccCc-cccccCCCCCCCCCCCCCCcCCHHHHHhhc---CCCCCCCCccccccCCChHH
Q psy17879         59 SSTYAGSLG----------YAASYSN-HIQRSLPNMSQPMSLEPPKIYPYHLLIITN---YRLPPDVDRKNLERHLSDVE  124 (154)
Q Consensus        59 s~t~~g~l~----------~~~~~~~-~~Rrslp~~s~~l~~~~~k~Ypye~L~~~~---~~LP~gVDptklE~YLSDeD  124 (154)
                      |++|+|++|          +...+|- -.+.+||+|..     ..++|||+.|+.++   .+||++||+++||+||+.||
T Consensus       566 stS~sgs~G~~r~~~~~~~g~~p~g~~~~~~SlP~~~~-----e~KiypYe~L~vTnrgr~klp~dVDRtrLERHL~~e~  640 (670)
T KOG1044|consen  566 STSYSGSSGGYRDYQTLRDGPMPAGRMDRGVSLPNMML-----EPKIYPYEMLMVTNRGRNKLPRDVDRTRLERHLSPED  640 (670)
T ss_pred             cccccCCCccccccccccCCCccccccccccccccccc-----cccccChHHheecccccccCcccchhhHHhhccCHHH
Confidence            577888887          2211122 36778999643     68999999999877   78999999999999999999


Q ss_pred             HHHHhCCCHHHHhhChhHHHHHHhHhcCCC
Q psy17879        125 FETLFLCTRAEFYRLPTWRRNDLKKRARLF  154 (154)
Q Consensus       125 F~~VFGMsr~EF~~LP~WKQ~~LKK~~gLF  154 (154)
                      |.+||||+.+||++||.|||+||||++.||
T Consensus       641 F~eiF~MSi~EF~rL~LWkRnnlKkkAkLF  670 (670)
T KOG1044|consen  641 FSEIFGMSISEFDRLPLWKRNNLKKKAKLF  670 (670)
T ss_pred             HHHHhccCHhhhchhhhhhhhhhhhhhccC
Confidence            999999999999999999999999999999

>KOG0443|consensus

Probab=99.77  E-value=1.9e-19  Score=170.48  Aligned_cols=63  Identities=40%  Similarity=0.742  Sum_probs=57.8

Q ss_pred             CCCcCCHHHHHhhc-CCCCCCCCccccccCCChHHHHHHhCCCHHHHhhChhHHHHHHhHhcCCC
Q psy17879         91 PPKIYPYHLLIITN-YRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF  154 (154)
Q Consensus        91 ~~k~Ypye~L~~~~-~~LP~gVDptklE~YLSDeDF~~VFGMsr~EF~~LP~WKQ~~LKK~~gLF  154 (154)
                      +...|||++|+.+. .++|+ |||+|+|.|||++||+.+|||+|+||++||+|||++|||+.+||
T Consensus       764 p~~~~~~e~l~~~~~~~~~~-id~~rrE~yLs~~dF~~~Fgmtk~eF~~LPkWKq~~lKk~~~LF  827 (827)
T KOG0443|consen  764 PRPAFPYEQLLTQSEDPVPD-IDPTRREAYLSEEEFVSVFGMTKEEFYALPKWKQNKLKKQFGLF  827 (827)
T ss_pred             cccCCCHHHHhccccCcCCC-CChhHhhhhccHHHHHHHhCcCHHHHhhcchhHHHHHhhhhccC
Confidence            33599999999544 56777 99999999999999999999999999999999999999999999

>KOG0445|consensus

Probab=99.76  E-value=1.2e-19  Score=170.73  Aligned_cols=106  Identities=27%  Similarity=0.400  Sum_probs=81.0

Q ss_pred             CcCCCCCCCCcccccccCCCcccccccCccccccCCCCCCCCCCCCCCcCCHHHHHhhcCCCCCCCCccccccCCChHHH
Q psy17879         46 HHVPNGGAPELPVSSTYAGSLGYAASYSNHIQRSLPNMSQPMSLEPPKIYPYHLLIITNYRLPPDVDRKNLERHLSDVEF  125 (154)
Q Consensus        46 ~~~~~~~~~~~~~s~t~~g~l~~~~~~~~~~Rrslp~~s~~l~~~~~k~Ypye~L~~~~~~LP~gVDptklE~YLSDeDF  125 (154)
                      ++++--|++++.|.+-|..-- -+...-+.+-.+...+.++|...-.++||+++|..  ++||+||||.+||.||+||||
T Consensus       814 ~~vV~aGlEPl~Fk~lFp~We-~red~D~~~s~~i~~v~d~La~~c~T~yple~l~a--rpLPeGvdp~rLE~YLtdeDF  890 (919)
T KOG0445|consen  814 SYVVHAGLEPLTFKNLFPSWE-HREDIDTEVSNQITLVEDVLAKLCKTIYPLEDLLA--RPLPEGVDPLRLEIYLTDEDF  890 (919)
T ss_pred             ceEEEcCcChhhhhhhCCCce-eccccCCCcCCchhHHHHHHHHHhhhcChHHHHhc--CCCCCCCCchhheeeechHHH
Confidence            455555777777776664331 11111122333333344467777778999999974  599999999999999999999


Q ss_pred             HHHhCCCHHHHhhChhHHHHHHhHhcCCC
Q psy17879        126 ETLFLCTRAEFYRLPTWRRNDLKKRARLF  154 (154)
Q Consensus       126 ~~VFGMsr~EF~~LP~WKQ~~LKK~~gLF  154 (154)
                      +.+|||+|+||++||.|||+++||+.|||
T Consensus       891 ~~al~~~R~Ef~alp~WKQ~~lkK~~GLF  919 (919)
T KOG0445|consen  891 EFALDMTRDEFNALPAWKQVNLKKAKGLF  919 (919)
T ss_pred             HHHhccCHHHhhcchhhhhhhhhhhccCC
Confidence            99999999999999999999999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	154
1ujs_A	88	Solution Structure Of The Villin Headpiece Domain O		3e-15
2l3x_A	67	Villin Head Piece Domain Of Human Ablim2 Length = 6		2e-13
1zv6_A	68	Nmr Structure Of The Human Dematin Headpiece S74e M		4e-13
1qzp_A	68	Nmr Structure Of The Human Dematin Headpiece Domain		5e-13
1yu8_X	67	Crystal Structure Of The R37a Mutant Of Villin Head		2e-06
1yu5_X	67	Crystal Structure Of The Headpiece Domain Of Chicke		2e-06
3nkj_A	67	Crystal Structure Of Hp67 L61g Length = 67		9e-06
2rjv_A	67	Crystal Structure Of The H41y Mutant Of Villin Head		1e-05
3myc_A	67	Crystal Structure Of Hp67 H41f - P212121 Length = 6		2e-05
1yu7_X	67	Crystal Structure Of The W64y Mutant Of Villin Head		2e-05
3mye_X	68	Crystal Structure Of Hp67 L61gl Length = 68		4e-05

>pdb|1UJS|A Chain A, Solution Structure Of The Villin Headpiece Domain Of Human Actin-Binding Lim Protein Homologue (Kiaa0843 Protein) Length = 88

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 46/65 (70%), Gaps = 3/65 (4%)
Query: 93  KIYPYHLLIITNY---RLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
           KIYPY LL++T     RLP DVDR  LERHLS  EF  +F  T +EF RL  W+RN+LKK
Sbjct: 18  KIYPYELLLVTTRGRNRLPKDVDRTRLERHLSQEEFYQVFGMTISEFDRLALWKRNELKK 77
Query: 150 RARLF 154
           +ARLF
Sbjct: 78  QARLF 82

>pdb|2L3X|A Chain A, Villin Head Piece Domain Of Human Ablim2 Length = 67

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 93  KIYPYHLLIITN---YRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
           KIYPY  LI+TN    +LP DVDR  LERHLS  EF+ +F  +  EF RL  W+RNDLKK
Sbjct: 3   KIYPYDSLIVTNRIRVKLPKDVDRTRLERHLSPEEFQEVFGMSIEEFDRLALWKRNDLKK 62
Query: 150 RARLF 154
           +A LF
Sbjct: 63  KALLF 67

>pdb|1ZV6|A Chain A, Nmr Structure Of The Human Dematin Headpiece S74e Mutant Length = 68

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 93  KIYPYHLLIITNY---RLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
           +IYPY +L++TN    +LPP VDR  LERHLS  +F  +F  +  EF +L  W+RN+LKK
Sbjct: 4   QIYPYEMLVVTNKGRTKLPPGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKK 63
Query: 150 RARLF 154
           +A LF
Sbjct: 64  KAELF 68

>pdb|1QZP|A Chain A, Nmr Structure Of The Human Dematin Headpiece Domain Length = 68

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
Query: 93  KIYPYHLLIITNY---RLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
           +IYPY +L++TN    +LPP VDR  LERHLS  +F  +F  +  EF +L  W+RN+LKK
Sbjct: 4   QIYPYEMLVVTNKGRTKLPPGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKK 63
Query: 150 RARLF 154
           +A LF
Sbjct: 64  KASLF 68

>pdb|1YU8|X Chain X, Crystal Structure Of The R37a Mutant Of Villin Headpiece Length = 67

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 86  PMSLEPPKIYPYHLLIITNYR-LPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRR 144
           P  LE    +P  +L+ T    LP  VD    E HLSD +F+ +F  TR+ F  LP W++
Sbjct: 1   PTKLE---TFPLDVLVNTAAEDLPRGVDPSAKENHLSDEDFKAVFGMTRSAFANLPLWKQ 57
Query: 145 NDLKKRARLF 154
            +LKK   LF
Sbjct: 58  QNLKKEKGLF 67

>pdb|1YU5|X Chain X, Crystal Structure Of The Headpiece Domain Of Chicken Villin Length = 67

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 86  PMSLEPPKIYPYHLLIITNYR-LPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRR 144
           P  LE    +P  +L+ T    LP  VD    E HLSD +F+ +F  TR+ F  LP W++
Sbjct: 1   PTKLE---TFPLDVLVNTAAEDLPRGVDPSRKENHLSDEDFKAVFGMTRSAFANLPLWKQ 57
Query: 145 NDLKKRARLF 154
            +LKK   LF
Sbjct: 58  QNLKKEKGLF 67

>pdb|3NKJ|A Chain A, Crystal Structure Of Hp67 L61g Length = 67

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 86  PMSLEPPKIYPYHLLIITNYR-LPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRR 144
           P  LE    +P  +L+ T    LP  VD    E HLSD +F+ +F  TR+ F   P W++
Sbjct: 1   PTKLE---TFPLDVLVNTAAEDLPRGVDPSRKENHLSDEDFKAVFGMTRSAFANGPLWKQ 57
Query: 145 NDLKKRARLF 154
            +LKK   LF
Sbjct: 58  QNLKKEKGLF 67

>pdb|2RJV|A Chain A, Crystal Structure Of The H41y Mutant Of Villin Headpiece, P 21 21 21 Space Group Length = 67

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 86  PMSLEPPKIYPYHLLIITNYR-LPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRR 144
           P  LE    +P  +L+ T    LP  VD    E +LSD +F+ +F  TR+ F  LP W++
Sbjct: 1   PTKLE---TFPLDVLVNTAAEDLPRGVDPSRKENYLSDEDFKAVFGMTRSAFANLPLWKQ 57
Query: 145 NDLKKRARLF 154
            +LKK   LF
Sbjct: 58  QNLKKEKGLF 67

>pdb|3MYC|A Chain A, Crystal Structure Of Hp67 H41f - P212121 Length = 67

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 86  PMSLEPPKIYPYHLLIITNYR-LPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRR 144
           P  LE    +P  +L+ T    LP  VD    E  LSD +F+ +F  TR+ F  LP W++
Sbjct: 1   PTKLE---TFPLDVLVNTAAEDLPRGVDPSRKENFLSDEDFKAVFGMTRSAFANLPLWKQ 57
Query: 145 NDLKKRARLF 154
            +LKK   LF
Sbjct: 58  QNLKKEKGLF 67

>pdb|1YU7|X Chain X, Crystal Structure Of The W64y Mutant Of Villin Headpiece Length = 67

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 86  PMSLEPPKIYPYHLLIITNYR-LPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRR 144
           P  LE    +P  +L+ T    LP  VD    E HLSD +F+ +F  TR+ F  LP +++
Sbjct: 1   PTKLE---TFPLDVLVNTAAEDLPRGVDPSRKENHLSDEDFKAVFGMTRSAFANLPLYKQ 57
Query: 145 NDLKKRARLF 154
            +LKK   LF
Sbjct: 58  QNLKKEKGLF 67

>pdb|3MYE|X Chain X, Crystal Structure Of Hp67 L61gl Length = 68

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 86  PMSLEPPKIYPYHLLIITNYR-LPPDVDRKNLERHLSDVEFETLFLCTRAEFYR-LPTWR 143
           P  LE    +P  +L+ T    LP  VD    E HLSD +F+ +F  TR+ F   LP W+
Sbjct: 1   PTKLE---TFPLDVLVNTAAEDLPRGVDPSRKENHLSDEDFKAVFGMTRSAFANGLPLWK 57
Query: 144 RNDLKKRARLF 154
           + +LKK   LF
Sbjct: 58  QQNLKKEKGLF 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	154
1ujs_A	88	Actin-binding LIM protein homologue; VHP domain, s	2e-28
1qzp_A	68	Dematin; villin headpiece, actin binding domain, p	8e-27
2k6m_S	67	Supervillin; SVHP, HP, headpiece, archvillin, acti	4e-26
1yu8_X	67	Villin; alpha helix, 3-10 helix, structural protei	4e-24
1und_A	37	Advillin, P92; actin binding, F-actin binding, cyt	6e-16
1wy3_A	35	Villin; structural protein; HET: NLE; 0.95A {Synth	8e-14

>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A Length = 88

 Score = 99.2 bits (247), Expect = 2e-28
 Identities = 39/80 (48%), Positives = 48/80 (60%), Gaps = 3/80 (3%)

Query: 78  RSLPNMSQPMSLEPPKIYPYHLLIITNY---RLPPDVDRKNLERHLSDVEFETLFLCTRA 134
                 +    +   KIYPY LL++T     RLP DVDR  LERHLS  EF  +F  T +
Sbjct: 3   SGSSGNAVNWGMREYKIYPYELLLVTTRGRNRLPKDVDRTRLERHLSQEEFYQVFGMTIS 62

Query: 135 EFYRLPTWRRNDLKKRARLF 154
           EF RL  W+RN+LKK+ARLF
Sbjct: 63  EFDRLALWKRNELKKQARLF 82

>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A Length = 68

 Score = 94.8 bits (236), Expect = 8e-27
 Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 3/65 (4%)

Query: 93  KIYPYHLLIITN---YRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
           +IYPY +L++TN    +LPP VDR  LERHLS  +F  +F  +  EF +L  W+RN+LKK
Sbjct: 4   QIYPYEMLVVTNKGRTKLPPGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKK 63

Query: 150 RARLF 154
           +A LF
Sbjct: 64  KASLF 68

>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A Length = 67

 Score = 93.2 bits (232), Expect = 4e-26
 Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 93  KIYPYHLLIITNYRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRAR 152
            IYP   L+     LP  VD   LE +L+D +FE     TR E+  LP W++ +LKK   
Sbjct: 8   TIYPLADLLARP--LPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKG 65

Query: 153 LF 154
           LF
Sbjct: 66  LF 67

>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A Length = 67

 Score = 87.9 bits (218), Expect = 4e-24
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 92  PKIYPYHLLIITNYR-LPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKR 150
            + +P  +L+ T    LP  VD    E HLSD +F+ +F  TR+ F  LP W++ +LKK 
Sbjct: 4   LETFPLDVLVNTAAEDLPRGVDPSAKENHLSDEDFKAVFGMTRSAFANLPLWKQQNLKKE 63

Query: 151 ARLF 154
             LF
Sbjct: 64  KGLF 67

>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1 Length = 37

 Score = 66.2 bits (162), Expect = 6e-16
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 119 HLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
           +LS+ +F ++F  TR +F  LP W++  +KK   LF
Sbjct: 2   YLSEQDFVSVFGITRGQFAALPGWKQLQMKKEKGLF 37

>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B* Length = 35

 Score = 60.8 bits (148), Expect = 8e-14
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 120 LSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
           LSD +F+ +F  TR+ F  LP W +  LKK   LF
Sbjct: 1   LSDEDFKAVFGMTRSAFANLPLWLQQHLKKEKGLF 35

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	154
2k6m_S	67	Supervillin; SVHP, HP, headpiece, archvillin, acti	99.97
1qzp_A	68	Dematin; villin headpiece, actin binding domain, p	99.96
1yu8_X	67	Villin; alpha helix, 3-10 helix, structural protei	99.96
1ujs_A	88	Actin-binding LIM protein homologue; VHP domain, s	99.96
1und_A	37	Advillin, P92; actin binding, F-actin binding, cyt	99.84
1wy3_A	35	Villin; structural protein; HET: NLE; 0.95A {Synth	99.81

>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A

Probab=99.97  E-value=3.6e-31  Score=184.52  Aligned_cols=67  Identities=37%  Similarity=0.547  Sum_probs=62.7

Q ss_pred             CCCCCCCCcCCHHHHHhhcCCCCCCCCccccccCCChHHHHHHhCCCHHHHhhChhHHHHHHhHhcCCC
Q psy17879         86 PMSLEPPKIYPYHLLIITNYRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF  154 (154)
Q Consensus        86 ~l~~~~~k~Ypye~L~~~~~~LP~gVDptklE~YLSDeDF~~VFGMsr~EF~~LP~WKQ~~LKK~~gLF  154 (154)
                      +|+....++|||++|+.  .++|+|||++++|.||||+||++||||+|+||++||+|||+++||++|||
T Consensus         1 ~l~~l~~~~yp~~~L~~--~~lP~gVD~~~lE~yLsdedF~~vFgmsr~eF~~LP~WKq~~lKk~~~LF   67 (67)
T 2k6m_S            1 MLAKLCKTIYPLADLLA--RPLPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKGLF   67 (67)
T ss_dssp             CCSSCCCCCCCHHHHTT--SCCCSSSBTTBCGGGSCHHHHHHHTSSCHHHHTTSCHHHHHHHHHHHTCC
T ss_pred             ChHHHcCCccCHHHHhc--CCCCCCCCchHHHhhCCHHHHHHHHCcCHHHHHHCcHHHHHHHHHHhCCC
Confidence            35666778999999984  58999999999999999999999999999999999999999999999999

>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A

Probab=99.96  E-value=1.1e-30  Score=182.19  Aligned_cols=63  Identities=51%  Similarity=0.954  Sum_probs=59.6

Q ss_pred             CCcCCHHHHHhh---cCCCCCCCCccccccCCChHHHHHHhCCCHHHHhhChhHHHHHHhHhcCCC
Q psy17879         92 PKIYPYHLLIIT---NYRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF  154 (154)
Q Consensus        92 ~k~Ypye~L~~~---~~~LP~gVDptklE~YLSDeDF~~VFGMsr~EF~~LP~WKQ~~LKK~~gLF  154 (154)
                      .++|||++|+.+   ..++|+|||++++|.||||+||++||||+|+||++||+|||+++||++|||
T Consensus         3 ~~~ypy~~L~~~~~~~~~lP~gVD~~~lE~yLsdedF~~vFgmsr~eF~~LP~WKq~~lKk~~~LF   68 (68)
T 1qzp_A            3 LQIYPYEMLVVTNKGRTKLPPGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKKKASLF   68 (68)
T ss_dssp             CCCBCSTTTCCCSCTTCCCCSSCCGGGCGGGBCHHHHHHHSSSCHHHHHHSCHHHHHHHHHHHTCC
T ss_pred             CccccHHHHHHhcccccCCCCCCCchHHHhhCCHHHHHHHHCcCHHHHHHChHHHHHHHHHHhcCC
Confidence            478999999843   478999999999999999999999999999999999999999999999999

>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A

Probab=99.96  E-value=4.2e-30  Score=179.35  Aligned_cols=63  Identities=38%  Similarity=0.699  Sum_probs=59.8

Q ss_pred             CCcCCHHHHH-hhcCCCCCCCCccccccCCChHHHHHHhCCCHHHHhhChhHHHHHHhHhcCCC
Q psy17879         92 PKIYPYHLLI-ITNYRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF  154 (154)
Q Consensus        92 ~k~Ypye~L~-~~~~~LP~gVDptklE~YLSDeDF~~VFGMsr~EF~~LP~WKQ~~LKK~~gLF  154 (154)
                      .++|||++|+ ..+.++|+|||++++|.||||+||++||||+|+||++||+|||+++||++|||
T Consensus         4 ~~~yp~~~L~~~~~~~lP~gVD~~~lE~yLsdedF~~vFgms~~eF~~LP~WKq~~lKk~~~LF   67 (67)
T 1yu8_X            4 LETFPLDVLVNTAAEDLPRGVDPSAKENHLSDEDFKAVFGMTRSAFANLPLWKQQNLKKEKGLF   67 (67)
T ss_dssp             CCCCCHHHHHSSCGGGSCTTCCTTCGGGGSCHHHHHHHHSSCHHHHHTSCHHHHHHHHHHTTCC
T ss_pred             ccccCHHHHHHhccCCCCcccChHHHHhcCCHHHHHHHHCcCHHHHHHChHHHHHHHHHHhcCC
Confidence            4689999999 44678999999999999999999999999999999999999999999999998

>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A

Probab=99.96  E-value=8.5e-30  Score=185.85  Aligned_cols=63  Identities=62%  Similarity=0.985  Sum_probs=59.6

Q ss_pred             CCcCCHHHHHhh---cCCCCCCCCccccccCCChHHHHHHhCCCHHHHhhChhHHHHHHhHhcCCC
Q psy17879         92 PKIYPYHLLIIT---NYRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF  154 (154)
Q Consensus        92 ~k~Ypye~L~~~---~~~LP~gVDptklE~YLSDeDF~~VFGMsr~EF~~LP~WKQ~~LKK~~gLF  154 (154)
                      .++|||++|+.+   ..++|+|||+++||.||||+||++||||+|+||++||+|||+++||++|||
T Consensus        17 ~~~Ypye~L~~~~~~~~~lP~gVD~tklE~YLSdedF~~vFgMsr~eF~~LP~WKq~~lKK~~gLF   82 (88)
T 1ujs_A           17 YKIYPYELLLVTTRGRNRLPKDVDRTRLERHLSQEEFYQVFGMTISEFDRLALWKRNELKKQARLF   82 (88)
T ss_dssp             CCCCCTTTTCCCTTTTCCCCSSCCTTTGGGGSCTTHHHHHHSSCHHHHTTSCHHHHHHHHHHTTCC
T ss_pred             cccccHHHHHHhcccccCCCcccCHHHHHhcCCHHHHHHHHCcCHHHHHHChHHHHHHHHHHcCCc
Confidence            589999999853   368999999999999999999999999999999999999999999999999

>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1

Probab=99.84  E-value=1e-21  Score=123.37  Aligned_cols=37  Identities=38%  Similarity=0.695  Sum_probs=35.8

Q ss_pred             cCCChHHHHHHhCCCHHHHhhChhHHHHHHhHhcCCC
Q psy17879        118 RHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF  154 (154)
Q Consensus       118 ~YLSDeDF~~VFGMsr~EF~~LP~WKQ~~LKK~~gLF  154 (154)
                      .||||+||++||||+|+||++||+|||+++||++|||
T Consensus         1 ~yLsd~dF~~vFgmsr~eF~~LP~WKq~~lKk~~~LF   37 (37)
T 1und_A            1 XYLSEQDFVSVFGITRGQFAALPGWKQLQMKKEKGLF   37 (37)
T ss_dssp             -CCCHHHHHHHHSSCHHHHHHSCHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHCcCHHHHHHChHHHHHHHHHHhcCC
Confidence            4999999999999999999999999999999999998

>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*

Probab=99.81  E-value=1.9e-20  Score=116.46  Aligned_cols=35  Identities=46%  Similarity=0.787  Sum_probs=34.6

Q ss_pred             CChHHHHHHhCCCHHHHhhChhHHHHHHhHhcCCC
Q psy17879        120 LSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF  154 (154)
Q Consensus       120 LSDeDF~~VFGMsr~EF~~LP~WKQ~~LKK~~gLF  154 (154)
                      |||+||++||||+|+||++||+|||+++||++|||
T Consensus         1 Lsd~dF~~vFgmsr~eF~~LP~WKq~~lKk~~~LF   35 (35)
T 1wy3_A            1 LSDEDFKAVFGMTRSAFANLPLWLQQHLKKEKGLF   35 (35)
T ss_dssp             CCHHHHHHHHSSCHHHHHHSCHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHCCCHHHHHHCcHHHHHHHHHHhCCC
Confidence            89999999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	154
d1ujsa_	88	a.14.1.1 (A:) Actin-binding LIM protein homologue	8e-29
d1qzpa_	68	a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId	7e-28
d1yu5x1	67	a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus)	4e-26
d1unda_	36	a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxI	3e-15
d1yu8x1	35	a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus)	5e-15

>d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: VHP, Villin headpiece domain
superfamily: VHP, Villin headpiece domain
family: VHP, Villin headpiece domain
domain: Actin-binding LIM protein homologue KIAA0843
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.5 bits (248), Expect = 8e-29
 Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 3/77 (3%)

Query: 81  PNMSQPMSLEPPKIYPYHLLIITNY---RLPPDVDRKNLERHLSDVEFETLFLCTRAEFY 137
              +    +   KIYPY LL++T     RLP DVDR  LERHLS  EF  +F  T +EF 
Sbjct: 6   SGNAVNWGMREYKIYPYELLLVTTRGRNRLPKDVDRTRLERHLSQEEFYQVFGMTISEFD 65

Query: 138 RLPTWRRNDLKKRARLF 154
           RL  W+RN+LKK+ARLF
Sbjct: 66  RLALWKRNELKKQARLF 82

>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: VHP, Villin headpiece domain
superfamily: VHP, Villin headpiece domain
family: VHP, Villin headpiece domain
domain: Dematin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.3 bits (240), Expect = 7e-28
 Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 3/65 (4%)

Query: 93  KIYPYHLLIITN---YRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKK 149
           +IYPY +L++TN    +LPP VDR  LERHLS  +F  +F  +  EF +L  W+RN+LKK
Sbjct: 4   QIYPYEMLVVTNKGRTKLPPGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKK 63

Query: 150 RARLF 154
           +A LF
Sbjct: 64  KASLF 68

>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 67

class: All alpha proteins
fold: VHP, Villin headpiece domain
superfamily: VHP, Villin headpiece domain
family: VHP, Villin headpiece domain
domain: Villin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 91.7 bits (228), Expect = 4e-26
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 93  KIYPYHLLIITNYR-LPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRA 151
           + +P  +L+ T    LP  VD    E HLSD +F+ +F  TR+ F  LP W++ +LKK  
Sbjct: 5   ETFPLDVLVNTAAEDLPRGVDPSRKENHLSDEDFKAVFGMTRSAFANLPLWKQQNLKKEK 64

Query: 152 RLF 154
            LF
Sbjct: 65  GLF 67

>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: All alpha proteins
fold: VHP, Villin headpiece domain
superfamily: VHP, Villin headpiece domain
family: VHP, Villin headpiece domain
domain: Advillin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (154), Expect = 3e-15
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 119 HLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
           +LS+ +F ++F  TR +F  LP W++  +KK   LF
Sbjct: 1   YLSEQDFVSVFGITRGQFAALPGWKQLQMKKEKGLF 36

>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 35

class: All alpha proteins
fold: VHP, Villin headpiece domain
superfamily: VHP, Villin headpiece domain
family: VHP, Villin headpiece domain
domain: Villin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 62.8 bits (153), Expect = 5e-15
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 120 LSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF 154
           LSD +F+ +F  TR+ F  LP W++ +LKK   LF
Sbjct: 1   LSDEDFKAVFGMTRSAFANLPLWKQQNLKKEKGLF 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	154
d1yu5x1	67	Villin {Chicken (Gallus gallus) [TaxId: 9031]}	99.96
d1qzpa_	68	Dematin {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ujsa_	88	Actin-binding LIM protein homologue KIAA0843 {Huma	99.96
d1unda_	36	Advillin {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1yu8x1	35	Villin {Chicken (Gallus gallus) [TaxId: 9031]}	99.82

>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: VHP, Villin headpiece domain
superfamily: VHP, Villin headpiece domain
family: VHP, Villin headpiece domain
domain: Villin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=8.9e-31  Score=181.32  Aligned_cols=63  Identities=38%  Similarity=0.690  Sum_probs=59.5

Q ss_pred             CCcCCHHHHHh-hcCCCCCCCCccccccCCChHHHHHHhCCCHHHHhhChhHHHHHHhHhcCCC
Q psy17879         92 PKIYPYHLLII-TNYRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF  154 (154)
Q Consensus        92 ~k~Ypye~L~~-~~~~LP~gVDptklE~YLSDeDF~~VFGMsr~EF~~LP~WKQ~~LKK~~gLF  154 (154)
                      .++|||++|+. .+.+||+|||++++|.||||+||++||||||+||++||+|||+++||++|||
T Consensus         4 ~~~yp~e~L~~~~~~~lP~gVD~~~lE~yLsd~dF~~vFgms~~eF~~LP~WKq~~lKk~~~LF   67 (67)
T d1yu5x1           4 LETFPLDVLVNTAAEDLPRGVDPSRKENHLSDEDFKAVFGMTRSAFANLPLWKQQNLKKEKGLF   67 (67)
T ss_dssp             CCCCCHHHHHSSCGGGSCTTCCTTCGGGGSCHHHHHHHHSSCHHHHHTSCHHHHHHHHHHTTCC
T ss_pred             cCccCHHHHhhcccccCCCCCChHHHHhhCCHHHHHHHHCcCHHHHHHCcHHHHHHHHHHhCCC
Confidence            46899999983 4568999999999999999999999999999999999999999999999999

>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: VHP, Villin headpiece domain
superfamily: VHP, Villin headpiece domain
family: VHP, Villin headpiece domain
domain: Dematin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.3e-31  Score=182.28  Aligned_cols=63  Identities=49%  Similarity=0.935  Sum_probs=59.5

Q ss_pred             CCcCCHHHHHh---hcCCCCCCCCccccccCCChHHHHHHhCCCHHHHhhChhHHHHHHhHhcCCC
Q psy17879         92 PKIYPYHLLII---TNYRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF  154 (154)
Q Consensus        92 ~k~Ypye~L~~---~~~~LP~gVDptklE~YLSDeDF~~VFGMsr~EF~~LP~WKQ~~LKK~~gLF  154 (154)
                      .++|||++|+.   ...+||+|||++++|.||||+||++||||||+||++||+|||+++||++|||
T Consensus         3 ~~iYpye~L~~~~~~~~~lP~gVD~~~lE~yLsd~dF~~vFgms~~eF~~Lp~WKq~~lKk~~gLF   68 (68)
T d1qzpa_           3 LQIYPYEMLVVTNKGRTKLPPGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKKKASLF   68 (68)
T ss_dssp             CCCBCSTTTCCCSCTTCCCCSSCCGGGCGGGBCHHHHHHHSSSCHHHHHHSCHHHHHHHHHHHTCC
T ss_pred             CceecHHHHHhhccccccCCCCCChHHHHhhCCHHHHHHHHCcCHHHHHHCcHHHHHHHHHHhCCC
Confidence            47999999973   3568999999999999999999999999999999999999999999999999

>d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: VHP, Villin headpiece domain
superfamily: VHP, Villin headpiece domain
family: VHP, Villin headpiece domain
domain: Actin-binding LIM protein homologue KIAA0843
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.3e-30  Score=184.42  Aligned_cols=64  Identities=59%  Similarity=0.948  Sum_probs=60.2

Q ss_pred             CCCcCCHHHHHh---hcCCCCCCCCccccccCCChHHHHHHhCCCHHHHhhChhHHHHHHhHhcCCC
Q psy17879         91 PPKIYPYHLLII---TNYRLPPDVDRKNLERHLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF  154 (154)
Q Consensus        91 ~~k~Ypye~L~~---~~~~LP~gVDptklE~YLSDeDF~~VFGMsr~EF~~LP~WKQ~~LKK~~gLF  154 (154)
                      ..++|||++|+.   ...+||+|||+++||.||||+||++||||+|+||++||+|||+++||++|||
T Consensus        16 ~~k~Ypye~L~~~~~~~~~lP~gVD~~~lE~YLSdedF~~vFgMsr~eF~~LP~WKq~~lKK~~gLF   82 (88)
T d1ujsa_          16 EYKIYPYELLLVTTRGRNRLPKDVDRTRLERHLSQEEFYQVFGMTISEFDRLALWKRNELKKQARLF   82 (88)
T ss_dssp             CCCCCCTTTTCCCTTTTCCCCSSCCTTTGGGGSCTTHHHHHHSSCHHHHTTSCHHHHHHHHHHTTCC
T ss_pred             ccccccHHHHHhhccccccCCCCCCchHHHhcCCHHHHHHHHCcCHHHHHHCcHHHHHHHHHHhCCC
Confidence            579999999973   3468999999999999999999999999999999999999999999999999

>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: VHP, Villin headpiece domain
superfamily: VHP, Villin headpiece domain
family: VHP, Villin headpiece domain
domain: Advillin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.8e-22  Score=123.47  Aligned_cols=36  Identities=39%  Similarity=0.717  Sum_probs=35.7

Q ss_pred             CCChHHHHHHhCCCHHHHhhChhHHHHHHhHhcCCC
Q psy17879        119 HLSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF  154 (154)
Q Consensus       119 YLSDeDF~~VFGMsr~EF~~LP~WKQ~~LKK~~gLF  154 (154)
                      ||||+||++||||||+||++||+|||+++||++|||
T Consensus         1 yLsd~dF~~vFgmsr~eF~~LP~WKq~~lKk~~~LF   36 (36)
T d1unda_           1 YLSEQDFVSVFGITRGQFAALPGWKQLQMKKEKGLF   36 (36)
T ss_dssp             CCCHHHHHHHHSSCHHHHHHSCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHCcCHHHHHHCcHHHHHHHHHHhCCC
Confidence            899999999999999999999999999999999998

>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: VHP, Villin headpiece domain
superfamily: VHP, Villin headpiece domain
family: VHP, Villin headpiece domain
domain: Villin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.82  E-value=4.1e-21  Score=118.11  Aligned_cols=35  Identities=46%  Similarity=0.851  Sum_probs=34.6

Q ss_pred             CChHHHHHHhCCCHHHHhhChhHHHHHHhHhcCCC
Q psy17879        120 LSDVEFETLFLCTRAEFYRLPTWRRNDLKKRARLF  154 (154)
Q Consensus       120 LSDeDF~~VFGMsr~EF~~LP~WKQ~~LKK~~gLF  154 (154)
                      |||+||++||||||+||++||+|||+++||++|||
T Consensus         1 Lsd~dF~~vfgmsr~eF~~LP~WKq~~lKk~~~LF   35 (35)
T d1yu8x1           1 LSDEDFKAVFGMTRSAFANLPLWKQQNLKKEKGLF   35 (35)
T ss_dssp             SCHHHHHHHHSSCHHHHHTSCHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHCCCHHHHHHCcHhHHHHHHHHhCCC
Confidence            89999999999999999999999999999999998