Psyllid ID: psy17941

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------68
MTDPKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLAPFVSSFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAKITWEDVQSKYPKFEAQEGSK
cccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHcccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEHHHHHHHccccccEEEEEcccEEEEcccccccEEEccccccccEEEccccccccccccccccccEEEEEcHHHHHccccccEEEEHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEccccEEEEEEEccccccHHHHHHHHccccEEEEcccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccEEEEEEccEEEEEccHHHHHcccEEEEccccccccccccccccHHHHHHHHHHccccccccccEEEEEccccccccEEEEcccccccccHHHHHHHHHHHHHcccEEEEEcccccccHHHHccccccccEEEEEccccccccccEEEccccccccEEEEHHHHHHHHHHHHcccccHHHHHHHccccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccEcccEEEEccccccccccccHHHHHHHHHHHHHHHcEEEcccEEEcccccccHHHHHccccHHHcccccccccccccEEHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccEEEEEEcccccccccccccccccHccHEEEHHHHHHHHcccccHHHHHHHHHHHHccccccccEEEEEEHHHEEEEEEcccccccccHHHHccEEEEcccHHHHHcccccEEEEEHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHcccHHHEccccEEEEEcccccccccHHHHHHHccccEEEEEEccccEEEEEEEEEccHHHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccEEEEEcccEEEEcccEEEEEEEEEEEEEEEEcccEEcccccHHHHHHHHHHHcccccccccccEEEccccccccEEEEEEEccccHHHHHHHHHHHHHHHHccccEEEccccccccHEccccccccccEEEEEEccccccccEEEEEccccccEEEccHHHHHHHHHHHHcccccHHHHHHHccccccccccc
MTDPKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLderelklapfvssfDRAKMEDLLKRrffydqsfsiyggisgqydfgpmgcaLKTNMLSAWRQFFVLEEQMLEVDcsiltlepvlkasghvdRFADLMVKDLKTGECFRLDHLIKAHLEKlaaepktpqsvkeECADIVIKLDGMSKNEMDDVLKKynikspltkndlsepmefNLMFAtqigpsglikgylrpetaQGIFVNFKRLLefnsgrlpFAAAQIGNafrneisprsglirVREFTMAEIehfcdptdkshakfsdvETTQMMVLYSACnqmdgkpaeriTIGEAVRSNLVANETLGYFMARIQKFMIsvgidpekLRFRQHMGNEMAhyacdcwdaecltsygwvecvgcadrsaydLTQHFKAtgvrlsaekhlpepqtreivepvlnkgiigkefKKDAKTICDALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKkstktfhveeiipsviepsfgiGRIMYALFEhnfkmrdgdeqrtylalpplvaplkasilplssnpefqPFIKMLSSELsqngisfkvddsggsigkryartdeiaipfgitidfdtlkephsvtlrerdsmTQVRVKVNEVASVIKDLSLAKITwedvqskypkfeaqegsk
mtdpkveaELAPLRAAVKEQGDIVRALkaegapeldvkKAVAELKlrkkvlderelklapfvssfdraKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKlaaepktpqsvkeeCADIVIKLdgmsknemDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIgnafrneisprsGLIRVREFTMAEIEHfcdptdkshaKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVrlsaekhlpepqtreivepvlnKGIIGKEFKKDAKTICDALAALDLNSVSAVEEslntngkyellvddKEFVLTKDMISikkstktfhveeiipsviepsfgIGRIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRyartdeiaipfgitidfdtlkEPHSVtlrerdsmtqvrVKVNEVasvikdlslakitwedvqskypkfeaqegsk
MTDPKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLAPFVSSFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNFKMRDGDEQRTYlalpplvaplkaSILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAKITWEDVQSKYPKFEAQEGSK
***********************V**********LDVKKAVAELKLRKKVLDERELKLAPFVSSFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLA***********ECADIVIKLDG********VLKKYNI************MEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLS**********REIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLS****FQPFIKML********ISFKVD**GGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAKITWEDV**************
****************VK****IV***********DVKKAVAE*************************KMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSA**********RITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAKITWEDVQSKY***E******
MTDPKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLAPFVSSFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLA**********EECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAKITWEDVQSKYP*********
**DPKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLAPFVSSFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAKITWEDVQSKYPKFE******
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MTDPKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLAPFVSSFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAKITWEDVQSKYPKFEAQEGSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query679 2.2.26 [Sep-21-2011]
Q04451680 Glycine--tRNA ligase OS=B N/A N/A 0.995 0.994 0.681 0.0
Q10039742 Glycine--tRNA ligase OS=C yes N/A 0.991 0.907 0.628 0.0
Q9CZD3729 Glycine--tRNA ligase OS=M yes N/A 0.985 0.917 0.611 0.0
Q5RBL1739 Glycine--tRNA ligase OS=P yes N/A 0.989 0.909 0.603 0.0
P41250739 Glycine--tRNA ligase OS=H yes N/A 0.998 0.917 0.598 0.0
Q5I0G4637 Glycine--tRNA ligase (Fra no N/A 0.927 0.989 0.606 0.0
O23627729 Glycine--tRNA ligase 1, m yes N/A 0.972 0.905 0.499 0.0
P38088690 Glycine--tRNA ligase 1, m yes N/A 0.932 0.917 0.479 1e-180
Q10179652 Putative glycine--tRNA li yes N/A 0.901 0.938 0.482 1e-176
Q06817618 Glycine--tRNA ligase 2 OS no N/A 0.870 0.956 0.494 1e-171
>sp|Q04451|SYG_BOMMO Glycine--tRNA ligase OS=Bombyx mori PE=1 SV=2 Back     alignment and function desciption
 Score = 1001 bits (2588), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/679 (68%), Positives = 564/679 (83%), Gaps = 3/679 (0%)

Query: 1   MTDPKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLAP 60
           M DPK+E  LAPLRA VKEQGD+VR LK E APE+D+KKAVAELK RKK+L+++EL LAP
Sbjct: 1   MADPKIEEILAPLRANVKEQGDLVRKLKEEKAPEIDIKKAVAELKTRKKILEDKELSLAP 60

Query: 61  FVSSFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQ 120
               FDRAKMEDL+KRRFFYDQSF+IYGGI+GQ+DFGPMGCALK+NM+  W++FF+L+EQ
Sbjct: 61  AEDLFDRAKMEDLIKRRFFYDQSFAIYGGITGQFDFGPMGCALKSNMIHLWKKFFILQEQ 120

Query: 121 MLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQS 180
           MLEV+CSILT EPVLKASGHV+RFADLM KD+KTGECFRLDHLIK HLEK+ ++  T   
Sbjct: 121 MLEVECSILTPEPVLKASGHVERFADLMTKDIKTGECFRLDHLIKGHLEKIKSDKNTKIE 180

Query: 181 VKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKG 240
           +K E  DI+IKLDGM+ +EM  ++K++ +KSP++ NDL+ P+EFNLMF TQIGPSGL+KG
Sbjct: 181 LKAEIEDILIKLDGMNADEMSALMKRFEMKSPISGNDLTPPIEFNLMFNTQIGPSGLVKG 240

Query: 241 YLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHF 300
           +LRPETAQGIFVNFKRLLEFN GRLPFAAAQIGN+FRNEISPRSGL+RVREFTM EIEHF
Sbjct: 241 FLRPETAQGIFVNFKRLLEFNQGRLPFAAAQIGNSFRNEISPRSGLLRVREFTMCEIEHF 300

Query: 301 CDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARI 360
           CD   K H KF  V+ TQ + LYSA NQ  GKPA+  TIG+AV   +V NETLGYFMARI
Sbjct: 301 CDV--KEHPKFESVKNTQSL-LYSADNQEQGKPADLTTIGDAVCKGIVNNETLGYFMARI 357

Query: 361 QKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHF 420
             +M++VGIDP++LRFRQHMGNEMAHYACDCWDAECL+SYGW+ECVGCADRSAYDLTQH 
Sbjct: 358 HMYMLAVGIDPKRLRFRQHMGNEMAHYACDCWDAECLSSYGWIECVGCADRSAYDLTQHT 417

Query: 421 KATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEES 480
           KATG+RL+AEK LP P+  E+VE + N G IGK FKKD++ I D LA LD  ++  +++ 
Sbjct: 418 KATGIRLAAEKKLPAPKQIEVVEAIANNGRIGKAFKKDSQAINDTLATLDNAALEEMQKE 477

Query: 481 LNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNF 540
           L++NG+Y L+    EF LT  ++++KK+ KT HVEEIIPSVIEPSFG+GRI+Y + EHNF
Sbjct: 478 LDSNGEYTLITARGEFKLTPSLVNVKKTQKTIHVEEIIPSVIEPSFGVGRILYCILEHNF 537

Query: 541 KMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGS 600
           +MR+GDEQRTY +LPP VAP+K  +LPLS N EFQPF++ LS EL    +S KVDDS GS
Sbjct: 538 RMREGDEQRTYFSLPPTVAPMKCVVLPLSGNAEFQPFVRDLSQELITVDVSHKVDDSSGS 597

Query: 601 IGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAKI 660
           IG+RYARTDE+ +P+ +T+DFDT+KEPH+VTLRERDSM QVR+ + +V +V++DLS +KI
Sbjct: 598 IGRRYARTDELGVPYAVTVDFDTIKEPHTVTLRERDSMRQVRLPMADVPTVVRDLSNSKI 657

Query: 661 TWEDVQSKYPKFEAQEGSK 679
            W DV+ KYPKFE QE  K
Sbjct: 658 LWSDVEQKYPKFEQQETVK 676
Catalyzes the attachment of glycine to tRNA(Gly). Is also able produce diadenosine tetraphosphate (Ap4A), a universal pleiotropic signaling molecule needed for cell regulation pathways, by direct condensation of 2 ATPs.
Bombyx mori (taxid: 7091)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 4
>sp|Q10039|SYG_CAEEL Glycine--tRNA ligase OS=Caenorhabditis elegans GN=grs-1 PE=2 SV=2 Back     alignment and function description
>sp|Q9CZD3|SYG_MOUSE Glycine--tRNA ligase OS=Mus musculus GN=Gars PE=1 SV=1 Back     alignment and function description
>sp|Q5RBL1|SYG_PONAB Glycine--tRNA ligase OS=Pongo abelii GN=GARS PE=2 SV=1 Back     alignment and function description
>sp|P41250|SYG_HUMAN Glycine--tRNA ligase OS=Homo sapiens GN=GARS PE=1 SV=3 Back     alignment and function description
>sp|Q5I0G4|SYG_RAT Glycine--tRNA ligase (Fragment) OS=Rattus norvegicus GN=Gars PE=1 SV=1 Back     alignment and function description
>sp|O23627|SYGM1_ARATH Glycine--tRNA ligase 1, mitochondrial OS=Arabidopsis thaliana GN=GLYRS-1 PE=2 SV=1 Back     alignment and function description
>sp|P38088|SYG_YEAST Glycine--tRNA ligase 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GRS1 PE=1 SV=3 Back     alignment and function description
>sp|Q10179|SYG_SCHPO Putative glycine--tRNA ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=grs1 PE=3 SV=1 Back     alignment and function description
>sp|Q06817|SYG2_YEAST Glycine--tRNA ligase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GRS2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query679
156537409737 PREDICTED: glycyl-tRNA synthetase-like [ 0.998 0.919 0.756 0.0
189237111 834 PREDICTED: similar to glycyl-tRNA synthe 0.994 0.809 0.736 0.0
270007232 819 hypothetical protein TcasGA2_TC013782 [T 0.994 0.824 0.736 0.0
158293345703 AGAP008604-PA [Anopheles gambiae str. PE 0.997 0.963 0.735 0.0
312376083679 hypothetical protein AND_13183 [Anophele 0.997 0.997 0.731 0.0
403182736758 AAEL005728-PA [Aedes aegypti] 0.995 0.891 0.732 0.0
157111109764 glycyl-tRNA synthetase [Aedes aegypti] 0.995 0.884 0.732 0.0
307213760741 Glycyl-tRNA synthetase [Harpegnathos sal 0.998 0.914 0.731 0.0
332020039742 Glycyl-tRNA synthetase [Acromyrmex echin 0.998 0.913 0.727 0.0
170050075736 glycyl-tRNA synthetase [Culex quinquefas 0.994 0.917 0.729 0.0
>gi|156537409|ref|XP_001606827.1| PREDICTED: glycyl-tRNA synthetase-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score = 1091 bits (2821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/679 (75%), Positives = 594/679 (87%), Gaps = 1/679 (0%)

Query: 1   MTDPKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLAP 60
           M DPK+EAELAPLRA+VKEQGD+VR LKA+GAPELD+KKAVAELKLRKKVL+++EL L P
Sbjct: 59  MADPKIEAELAPLRASVKEQGDLVRKLKADGAPELDIKKAVAELKLRKKVLEDKELSLVP 118

Query: 61  FVSSFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQ 120
             ++FDRA+MEDLLKRRFFYDQSF+IYGGI+GQYDFGPMGCA K N+LSAWR FFVLEEQ
Sbjct: 119 DAATFDRARMEDLLKRRFFYDQSFAIYGGITGQYDFGPMGCAFKANLLSAWRNFFVLEEQ 178

Query: 121 MLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQS 180
           MLEVDCSILT E VLKASGHV+RFADLMVKD+K GECFRLDHLIKAHLEK+ A+ KT + 
Sbjct: 179 MLEVDCSILTPESVLKASGHVERFADLMVKDVKNGECFRLDHLIKAHLEKVCADKKTTEE 238

Query: 181 VKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKG 240
            K+EC DIVI+LDGM+K EM  VLKK+N+KSP+T+NDL+EP+EFNLMF TQIGP+GLIKG
Sbjct: 239 TKKECKDIVIRLDGMTKEEMGAVLKKFNMKSPITQNDLTEPIEFNLMFGTQIGPTGLIKG 298

Query: 241 YLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHF 300
           +LRPETAQGIFVNFKRLLEFN  +LPFAAAQIGN+FRNEISPRSGLIRVREFTMAEIEHF
Sbjct: 299 FLRPETAQGIFVNFKRLLEFNQEKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHF 358

Query: 301 CDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARI 360
           CDP+DKSH KF  V+ T M+ LYSACNQMDGK AE +TIG+AV S LVANETLGYFMARI
Sbjct: 359 CDPSDKSHHKFDSVKDTNML-LYSACNQMDGKSAEYLTIGKAVESGLVANETLGYFMARI 417

Query: 361 QKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHF 420
           QKF++ VG+DP+KLRFRQHMGNEMAHYACDCWDAE LTSYGWVECVGCADRSAYDLTQH 
Sbjct: 418 QKFLVKVGVDPKKLRFRQHMGNEMAHYACDCWDAELLTSYGWVECVGCADRSAYDLTQHT 477

Query: 421 KATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEES 480
           KATGV+L AEK LP+P+T ++ E   N+G+IGK F+K+AK I DALAAL+   + A+E+ 
Sbjct: 478 KATGVKLVAEKKLPQPKTIDVCEAAPNRGLIGKTFRKEAKVILDALAALEEKDIDALEKD 537

Query: 481 LNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNF 540
           LN  G+YEL   D  + +TKDMI+IK+  KT HVEE +PSVIEPSFGIGRIMY++FEHNF
Sbjct: 538 LNEKGEYELQTSDAPYKITKDMITIKRYQKTVHVEEFVPSVIEPSFGIGRIMYSVFEHNF 597

Query: 541 KMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGS 600
           KMRDGDEQR Y +LPP+VAPLK S+LPLSSN EF PF+K LS EL++  +S KVDDS GS
Sbjct: 598 KMRDGDEQRRYFSLPPVVAPLKCSVLPLSSNAEFTPFVKKLSQELTRVDVSHKVDDSSGS 657

Query: 601 IGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAKI 660
           IG+RYARTDEIAIPFGITIDFDTLKEPHS TLRERDSM QVR+ +  + +V++DLSL KI
Sbjct: 658 IGRRYARTDEIAIPFGITIDFDTLKEPHSATLRERDSMGQVRINLEVLPAVVRDLSLGKI 717

Query: 661 TWEDVQSKYPKFEAQEGSK 679
           TW DV++KYPKFE QE ++
Sbjct: 718 TWSDVEAKYPKFEQQESTE 736

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|189237111|ref|XP_971520.2| PREDICTED: similar to glycyl-tRNA synthetase [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270007232|gb|EFA03680.1| hypothetical protein TcasGA2_TC013782 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|158293345|ref|XP_557743.2| AGAP008604-PA [Anopheles gambiae str. PEST] gi|157016660|gb|EAL40245.2| AGAP008604-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|312376083|gb|EFR23277.1| hypothetical protein AND_13183 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|403182736|gb|EAT42765.2| AAEL005728-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|157111109|ref|XP_001651394.1| glycyl-tRNA synthetase [Aedes aegypti] Back     alignment and taxonomy information
>gi|307213760|gb|EFN89098.1| Glycyl-tRNA synthetase [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332020039|gb|EGI60490.1| Glycyl-tRNA synthetase [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|170050075|ref|XP_001859192.1| glycyl-tRNA synthetase [Culex quinquefasciatus] gi|167871658|gb|EDS35041.1| glycyl-tRNA synthetase [Culex quinquefasciatus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query679
FB|FBgn0027088765 Aats-gly "Glycyl-tRNA syntheta 0.997 0.884 0.707 5.4e-260
UNIPROTKB|Q04451680 Q04451 "Glycine--tRNA ligase" 0.995 0.994 0.671 2.9e-254
WB|WBGene00001744742 gars-1 [Caenorhabditis elegans 0.991 0.907 0.616 8e-227
UNIPROTKB|Q10039742 grs-1 "Glycine--tRNA ligase" [ 0.991 0.907 0.616 8e-227
ZFIN|ZDB-GENE-030131-9174764 gars "glycyl-tRNA synthetase" 0.995 0.884 0.607 2.7e-226
UNIPROTKB|F1NRK5747 GARS "Uncharacterized protein" 0.998 0.907 0.6 7.2e-226
UNIPROTKB|A5D7A2739 GARS "GARS protein" [Bos tauru 0.989 0.909 0.603 1.2e-223
UNIPROTKB|F1SII4742 GARS "Uncharacterized protein" 0.989 0.905 0.599 2e-223
MGI|MGI:2449057729 Gars "glycyl-tRNA synthetase" 0.989 0.921 0.602 1.4e-222
UNIPROTKB|Q5RBL1739 GARS "Glycine--tRNA ligase" [P 0.989 0.909 0.596 6e-222
FB|FBgn0027088 Aats-gly "Glycyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 2502 (885.8 bits), Expect = 5.4e-260, P = 5.4e-260
 Identities = 482/681 (70%), Positives = 567/681 (83%)

Query:     1 MTDPKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLAP 60
             M++P++EA+LAPLR  V+EQG++VR LKA+GAPE+DVKKAVAELK RKK+L+++EL L P
Sbjct:    87 MSNPEIEAQLAPLRERVQEQGNLVRDLKAKGAPEIDVKKAVAELKARKKLLEDKELALTP 146

Query:    61 FVSSFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQ 120
              V SFDRAKMEDLLKRRFFYDQSF+IYGGI+GQYDFGPMGCALK+N+L+ WRQ+F LEEQ
Sbjct:   147 SVVSFDRAKMEDLLKRRFFYDQSFAIYGGITGQYDFGPMGCALKSNILALWRQYFALEEQ 206

Query:   121 MLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLA-AEPKTPQ 179
             MLEVDCSILT EPVLKASGHV+RFADLMVKD+KTGECFRLDHLIK  LEKL+ A+  TP 
Sbjct:   207 MLEVDCSILTPEPVLKASGHVERFADLMVKDVKTGECFRLDHLIKQALEKLSKAKDATP- 265

Query:   180 SVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIK 239
             +++ EC DI+IKLDG++K E+  VL KYNIKSPLT NDL+EP+EFNLMFATQIGP+GL+K
Sbjct:   266 ALQAECEDIIIKLDGLNKQELAGVLAKYNIKSPLTGNDLTEPIEFNLMFATQIGPTGLVK 325

Query:   240 GYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEH 299
             G+LRPETAQGIFVNFKRLLEFN G+LPFA AQIGN+FRNEISPRSGLIRVREFTMAEIEH
Sbjct:   326 GFLRPETAQGIFVNFKRLLEFNQGKLPFAVAQIGNSFRNEISPRSGLIRVREFTMAEIEH 385

Query:   300 FCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMAR 359
             FCDP  K H KF ++++ + + LYSACNQMDGK A ++ IGEAV S LVANETLGY+MAR
Sbjct:   386 FCDPVLKDHPKFGNIKS-EKLTLYSACNQMDGKSAAQVQIGEAVASKLVANETLGYYMAR 444

Query:   360 IQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQH 419
             IQ+F++++GI PE LRFRQHM NEMAHYACDCWDAE LTSYGWVECVGCADRSAYDL QH
Sbjct:   445 IQQFLLAIGIKPECLRFRQHMSNEMAHYACDCWDAEILTSYGWVECVGCADRSAYDLGQH 504

Query:   420 FKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEE 479
               ATGVRL AEK LP P+T E+ E V NK  +GK FKK+AK I DALA L L  ++ VEE
Sbjct:   505 TAATGVRLVAEKRLPAPKTVEVSEIVPNKQALGKTFKKEAKNITDALAKLSLEEITKVEE 564

Query:   480 SLNTNGKYELLV-DDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEH 538
              L  +G+Y+L   D +   L KD IS+K STKT HVEE IPSV+EPSFGIGRIMY+L EH
Sbjct:   565 QLAGDGQYKLTTADGQSHDLGKDTISVKHSTKTVHVEEFIPSVVEPSFGIGRIMYSLLEH 624

Query:   539 NFKMRDGDEQRTYXXXXXXXXXXXXSILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSG 598
             +F+ RDGDEQR Y            SILPLS+N +FQP+ + LSS L++  +S KVDDS 
Sbjct:   625 SFQCRDGDEQRCYFTLPPLVAPIKCSILPLSNNTDFQPYTQKLSSALTKAELSHKVDDSS 684

Query:   599 GSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLA 658
             GSIG+RYARTDEIAIP+GIT+DFDTLKEPH+VTLR+R++M QVRV + EV  V+KDLS A
Sbjct:   685 GSIGRRYARTDEIAIPYGITVDFDTLKEPHTVTLRDRNTMKQVRVGLEEVVGVVKDLSTA 744

Query:   659 KITWEDVQSKYPKFEAQEGSK 679
             + TWE V  +YP FE QE SK
Sbjct:   745 RTTWESVTEQYPLFEQQEASK 765
GO:0004820 "glycine-tRNA ligase activity" evidence=ISS;NAS
GO:0006426 "glycyl-tRNA aminoacylation" evidence=IEA;NAS
GO:0005737 "cytoplasm" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
UNIPROTKB|Q04451 Q04451 "Glycine--tRNA ligase" [Bombyx mori (taxid:7091)] Back     alignment and assigned GO terms
WB|WBGene00001744 gars-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q10039 grs-1 "Glycine--tRNA ligase" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9174 gars "glycyl-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NRK5 GARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7A2 GARS "GARS protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SII4 GARS "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2449057 Gars "glycyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RBL1 GARS "Glycine--tRNA ligase" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A6VIK1SYG_METM76, ., 1, ., 1, ., 1, 40.43330.82470.9756yesN/A
O59235SYG_PYRHO6, ., 1, ., 1, ., 1, 40.38310.82910.9877yesN/A
P38088SYG_YEAST6, ., 1, ., 1, ., 1, 40.47920.93220.9173yesN/A
Q1IXM3SYG_DEIGD6, ., 1, ., 1, ., 1, 40.30520.60530.8154yesN/A
Q9CZD3SYG_MOUSE6, ., 1, ., 1, ., 1, 40.61100.98520.9176yesN/A
Q8SQZ6SYG_ENCCU6, ., 1, ., 1, ., 1, 40.45660.84380.9896yesN/A
Q8TYY9SYG_METKA6, ., 1, ., 1, ., 1, 40.37720.81880.9737yesN/A
C5A1H0SYG_THEGJ6, ., 1, ., 1, ., 1, 40.37810.81730.9736yesN/A
O23627SYGM1_ARATH6, ., 1, ., 1, ., 1, 40.49920.97200.9053yesN/A
Q6M0Q7SYG_METMP6, ., 1, ., 1, ., 1, 40.44030.82170.9721yesN/A
Q5JID8SYG_PYRKO6, ., 1, ., 1, ., 1, 40.37470.81730.9736yesN/A
C6A317SYG_THESM6, ., 1, ., 1, ., 1, 40.37640.81880.9754yesN/A
A4FZX1SYG_METM56, ., 1, ., 1, ., 1, 40.43670.82470.9739yesN/A
Q5I0G4SYG_RAT6, ., 1, ., 1, ., 1, 40.60600.92780.9890noN/A
Q8U0G2SYG_PYRFU6, ., 1, ., 1, ., 1, 40.38610.82620.9876yesN/A
Q04451SYG_BOMMO6, ., 1, ., 1, ., 1, 40.68180.99550.9941N/AN/A
A9A885SYG_METM66, ., 1, ., 1, ., 1, 40.44010.82470.9756yesN/A
Q9V176SYG_PYRAB6, ., 1, ., 1, ., 1, 40.39290.82620.9824yesN/A
Q10179SYG_SCHPO6, ., 1, ., 1, ., 1, 40.48290.90130.9386yesN/A
P41250SYG_HUMAN6, ., 1, ., 1, ., 1, 40.59850.99850.9174yesN/A
A0B5U4SYG_METTP6, ., 1, ., 1, ., 1, 40.40570.81590.9601yesN/A
O27874SYG_METTH6, ., 1, ., 1, ., 1, 40.39890.80550.9681yesN/A
O29346SYG_ARCFU6, ., 1, ., 1, ., 1, 40.42040.78930.9403yesN/A
Q5RBL1SYG_PONAB6, ., 1, ., 1, ., 1, 40.60380.98960.9093yesN/A
Q57681SYG_METJA6, ., 1, ., 1, ., 1, 40.44420.82470.9705yesN/A
Q10039SYG_CAEEL6, ., 1, ., 1, ., 1, 40.62810.99110.9070yesN/A
Q9YBF8SYG_AERPE6, ., 1, ., 1, ., 1, 40.34970.82760.9639yesN/A
A6URK3SYG_METVS6, ., 1, ., 1, ., 1, 40.41550.82620.9773yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.1.10.976
4th Layer6.1.1.140.991

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query679
PLN02734684 PLN02734, PLN02734, glycyl-tRNA synthetase 0.0
COG0423558 COG0423, GRS1, Glycyl-tRNA synthetase (class II) [ 0.0
TIGR00389551 TIGR00389, glyS_dimeric, glycyl-tRNA synthetase, d 0.0
PRK04173456 PRK04173, PRK04173, glycyl-tRNA synthetase; Provis 1e-123
cd00774254 cd00774, GlyRS-like_core, Glycyl-tRNA synthetase ( 2e-94
PRK14894539 PRK14894, PRK14894, glycyl-tRNA synthetase; Provis 2e-59
cd00858121 cd00858, GlyRS_anticodon, GlyRS Glycyl-anticodon b 1e-57
PRK04173456 PRK04173, PRK04173, glycyl-tRNA synthetase; Provis 2e-48
cd00774254 cd00774, GlyRS-like_core, Glycyl-tRNA synthetase ( 1e-26
pfam00587171 pfam00587, tRNA-synt_2b, tRNA synthetase class II 7e-26
pfam0312993 pfam03129, HGTP_anticodon, Anticodon binding domai 3e-23
cd0093551 cd00935, GlyRS_RNA, GlyRS_RNA binding domain 4e-20
cd00670235 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro 4e-11
cd0073894 cd00738, HGTP_anticodon, HGTP anticodon binding do 1e-10
cd0120042 cd01200, WHEPGMRS_RNA, EPRS-like_RNA binding domai 6e-10
pfam0045856 pfam00458, WHEP-TRS, WHEP-TRS domain 6e-10
cd00768211 cd00768, class_II_aaRS-like_core, Class II tRNA am 4e-09
smart0099156 smart00991, WHEP-TRS, A conserved domain of 46 ami 2e-08
PRK03991613 PRK03991, PRK03991, threonyl-tRNA synthetase; Vali 1e-05
TIGR00418563 TIGR00418, thrS, threonyl-tRNA synthetase 1e-05
cd00779255 cd00779, ProRS_core_prok, Prolyl-tRNA synthetase ( 1e-05
PLN02221572 PLN02221, PLN02221, asparaginyl-tRNA synthetase 2e-05
PRK12305575 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed 2e-05
COG0441589 COG0441, ThrS, Threonyl-tRNA synthetase [Translati 4e-05
PRK09194565 PRK09194, PRK09194, prolyl-tRNA synthetase; Provis 6e-05
COG0442500 COG0442, ProS, Prolyl-tRNA synthetase [Translation 1e-04
PRK08661477 PRK08661, PRK08661, prolyl-tRNA synthetase; Provis 1e-04
cd0086091 cd00860, ThrRS_anticodon, ThrRS Threonyl-anticodon 4e-04
TIGR00408472 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, fam 4e-04
pfam00587171 pfam00587, tRNA-synt_2b, tRNA synthetase class II 7e-04
PRK12325439 PRK12325, PRK12325, prolyl-tRNA synthetase; Provis 7e-04
cd0093650 cd00936, WEPRS_RNA, WEPRS_RNA binding domain 0.001
TIGR00409568 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, fa 0.003
>gnl|CDD|178335 PLN02734, PLN02734, glycyl-tRNA synthetase Back     alignment and domain information 
 Score =  882 bits (2281), Expect = 0.0
 Identities = 353/681 (51%), Positives = 446/681 (65%), Gaps = 18/681 (2%)

Query: 9   ELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLAPFVSSFD-- 66
            LA  +AAV  QG+ VRALKA  A + ++  A+ +LK  K      E +L   V +    
Sbjct: 8   ALAEKQAAVTAQGNAVRALKASKADKAEIDAAIEKLKALKLEKSALEKELQAAVGAGGDG 67

Query: 67  -------RAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEE 119
                  R  + + L+RR FY  SF IYGG++G YD+GP GCA+K+N+L+ WRQ FVLEE
Sbjct: 68  AASKEAFRQAVVNTLERRLFYIPSFKIYGGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEE 127

Query: 120 QMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHL-EKLAAEPKTP 178
            MLEV+C  +T E VLKASGHVD+F DLMVKD KTG CFR DHL+K    EKL  +    
Sbjct: 128 NMLEVECPCVTPEVVLKASGHVDKFTDLMVKDEKTGTCFRADHLLKDFCEEKLEKDLTIS 187

Query: 179 QSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLI 238
                E  D++  LD +S  E+   +K+Y IK+P TKN LS+P  FNLMF T IGPSGL 
Sbjct: 188 AEKAAELKDVLAVLDDLSAEELGAKIKEYGIKAPDTKNPLSDPYPFNLMFQTSIGPSGLS 247

Query: 239 KGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIE 298
            GY+RPETAQGIFVNF+ L  +N G+LPFAAAQIG AFRNEISPR GL+RVREFT+AEIE
Sbjct: 248 VGYMRPETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIE 307

Query: 299 HFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMA 358
           HF DP DKSH KFS+V   +  +L+    Q+ G+ A+ + +GEAV   +V NETLGYF+ 
Sbjct: 308 HFVDPEDKSHPKFSEVADLE-FLLFPREEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIG 366

Query: 359 RIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQ 418
           R   F+  +GID E+LRFRQH+ NEMAHYA DCWDAE   SYGW+ECVG ADRSAYDL  
Sbjct: 367 RTYLFLTKLGIDKERLRFRQHLANEMAHYAADCWDAEIECSYGWIECVGIADRSAYDLKA 426

Query: 419 HFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVE 478
           H   + V L A +   EP+  E++  V NK  +G  FK D K + +AL A++      ++
Sbjct: 427 HSDKSKVPLVAHEKFAEPREVEVLVIVPNKKELGLAFKGDQKVVVEALEAMNEKEAMEMK 486

Query: 479 ESLNTNGKYELLVDD--KEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALF 536
             L + G+ E  V    KE  + K+M+SI K  K  H     PSVIEPSFGIGRI+Y LF
Sbjct: 487 AKLESKGEAEFYVCTLGKEVEIKKNMVSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLF 546

Query: 537 EHNFKMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDD 596
           EH+F  R GDEQ      PPLVAP+K ++ PL  N +     K++S EL+  GIS K+D 
Sbjct: 547 EHSFYTRPGDEQLNVFRFPPLVAPIKCTVFPLVQNQQLNAVAKVISKELTAAGISHKIDI 606

Query: 597 SGGSIGKRYARTDEIAIPFGITIDFDTLKEPHSVTLRERDSMTQVRVKVNEVASVIKDLS 656
           +G SIGKRYARTDE+ +PF +T+D D      SVT+RERDS  QVRV V EVASV+KDL+
Sbjct: 607 TGTSIGKRYARTDELGVPFAVTVDSDG-----SVTIRERDSKDQVRVPVEEVASVVKDLT 661

Query: 657 LAKITWEDVQSKYPKFEAQEG 677
             ++TWEDV +KYP   +   
Sbjct: 662 DGRMTWEDVTAKYPAHSSAAD 682

Length = 684
>gnl|CDD|223500 COG0423, GRS1, Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232951 TIGR00389, glyS_dimeric, glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>gnl|CDD|235240 PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238397 cd00774, GlyRS-like_core, Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>gnl|CDD|237851 PRK14894, PRK14894, glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238435 cd00858, GlyRS_anticodon, GlyRS Glycyl-anticodon binding domain Back     alignment and domain information
>gnl|CDD|235240 PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238397 cd00774, GlyRS-like_core, Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T) Back     alignment and domain information
>gnl|CDD|202547 pfam03129, HGTP_anticodon, Anticodon binding domain Back     alignment and domain information
>gnl|CDD|238472 cd00935, GlyRS_RNA, GlyRS_RNA binding domain Back     alignment and domain information
>gnl|CDD|238359 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>gnl|CDD|238379 cd00738, HGTP_anticodon, HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS) Back     alignment and domain information
>gnl|CDD|238605 cd01200, WHEPGMRS_RNA, EPRS-like_RNA binding domain Back     alignment and domain information
>gnl|CDD|215929 pfam00458, WHEP-TRS, WHEP-TRS domain Back     alignment and domain information
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>gnl|CDD|214960 smart00991, WHEP-TRS, A conserved domain of 46 amino acids, called WHEP-TRS has been shown Back     alignment and domain information
>gnl|CDD|235190 PRK03991, PRK03991, threonyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|232967 TIGR00418, thrS, threonyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|238402 cd00779, ProRS_core_prok, Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237050 PRK12305, thrS, threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223518 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|236405 PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|223519 COG0442, ProS, Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|236327 PRK08661, PRK08661, prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238437 cd00860, ThrRS_anticodon, ThrRS Threonyl-anticodon binding domain Back     alignment and domain information
>gnl|CDD|232961 TIGR00408, proS_fam_I, prolyl-tRNA synthetase, family I Back     alignment and domain information
>gnl|CDD|216009 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T) Back     alignment and domain information
>gnl|CDD|237059 PRK12325, PRK12325, prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238473 cd00936, WEPRS_RNA, WEPRS_RNA binding domain Back     alignment and domain information
>gnl|CDD|232962 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, family II Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 679
PLN02734684 glycyl-tRNA synthetase 100.0
KOG2298|consensus599 100.0
TIGR00389551 glyS_dimeric glycyl-tRNA synthetase, dimeric type. 100.0
COG0423558 GRS1 Glycyl-tRNA synthetase (class II) [Translatio 100.0
PRK14894539 glycyl-tRNA synthetase; Provisional 100.0
PRK04173456 glycyl-tRNA synthetase; Provisional 100.0
TIGR00409568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 100.0
PRK09194565 prolyl-tRNA synthetase; Provisional 100.0
PRK12325439 prolyl-tRNA synthetase; Provisional 100.0
KOG2324|consensus457 100.0
PRK14799545 thrS threonyl-tRNA synthetase; Provisional 100.0
PRK03991613 threonyl-tRNA synthetase; Validated 100.0
COG0442500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 100.0
PRK08661477 prolyl-tRNA synthetase; Provisional 100.0
TIGR00408472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 100.0
PLN02837614 threonine-tRNA ligase 100.0
TIGR00418563 thrS threonyl-tRNA synthetase. This model represen 100.0
PRK12305575 thrS threonyl-tRNA synthetase; Reviewed 100.0
PLN02908686 threonyl-tRNA synthetase 100.0
PRK12444639 threonyl-tRNA synthetase; Reviewed 100.0
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 100.0
PRK00413638 thrS threonyl-tRNA synthetase; Reviewed 100.0
COG0124429 HisS Histidyl-tRNA synthetase [Translation, riboso 100.0
COG0441589 ThrS Threonyl-tRNA synthetase [Translation, riboso 100.0
KOG1637|consensus560 100.0
TIGR00414418 serS seryl-tRNA synthetase. This model represents 100.0
CHL00201430 syh histidine-tRNA synthetase; Provisional 100.0
PRK05431425 seryl-tRNA synthetase; Provisional 100.0
PLN02678448 seryl-tRNA synthetase 100.0
KOG1936|consensus518 100.0
PLN02530487 histidine-tRNA ligase 100.0
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 100.0
PRK00037412 hisS histidyl-tRNA synthetase; Reviewed 100.0
COG0172429 SerS Seryl-tRNA synthetase [Translation, ribosomal 100.0
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 100.0
PLN02320502 seryl-tRNA synthetase 100.0
PLN02972763 Histidyl-tRNA synthetase 100.0
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 100.0
TIGR00442397 hisS histidyl-tRNA synthetase. This model finds a 99.97
PRK12420423 histidyl-tRNA synthetase; Provisional 99.97
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 99.97
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 99.96
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 99.95
KOG4163|consensus551 99.95
PRK00960517 seryl-tRNA synthetase; Provisional 99.93
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 99.93
KOG2509|consensus455 99.92
PRK12292391 hisZ ATP phosphoribosyltransferase regulatory subu 99.9
TIGR00415520 serS_MJ seryl-tRNA synthetase, Methanococcus janna 99.88
PRK12421392 ATP phosphoribosyltransferase regulatory subunit; 99.83
cd00858121 GlyRS_anticodon GlyRS Glycyl-anticodon binding dom 99.83
cd02426128 Pol_gamma_b_Cterm C-terminal domain of mitochondri 99.83
cd00862202 ProRS_anticodon_zinc ProRS Prolyl-anticodon bindin 99.73
PRK14938387 Ser-tRNA(Thr) hydrolase; Provisional 99.7
TIGR00443314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 99.7
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 99.68
PF0312994 HGTP_anticodon: Anticodon binding domain; InterPro 99.66
cd0086194 ProRS_anticodon_short ProRS Prolyl-anticodon bindi 99.63
PRK12293281 hisZ ATP phosphoribosyltransferase regulatory subu 99.57
cd0086091 ThrRS_anticodon ThrRS Threonyl-anticodon binding d 99.56
cd0073894 HGTP_anticodon HGTP anticodon binding domain, as f 99.49
PF13393311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 99.35
cd0085991 HisRS_anticodon HisRS Histidyl-anticodon binding d 99.14
PRK12295373 hisZ ATP phosphoribosyltransferase regulatory subu 99.05
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 99.02
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 98.95
PRK07080317 hypothetical protein; Validated 98.9
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 98.84
COG3705390 HisZ ATP phosphoribosyltransferase involved in his 98.77
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 98.71
PRK12294272 hisZ ATP phosphoribosyltransferase regulatory subu 98.44
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 98.4
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 98.36
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 98.28
PRK09350306 poxB regulator PoxA; Provisional 98.05
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 98.05
COG0442500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 97.99
COG0173585 AspS Aspartyl-tRNA synthetase [Translation, riboso 97.98
PF12745 273 HGTP_anticodon2: Anticodon binding domain of tRNAs 97.97
COG2269322 Truncated, possibly inactive, lysyl-tRNA synthetas 97.57
cd00777280 AspRS_core Asp tRNA synthetase (aspRS) class II co 97.53
KOG2411|consensus628 97.5
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 97.44
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 97.38
TIGR00459583 aspS_bact aspartyl-tRNA synthetase, bacterial type 97.37
PF0045856 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A c 97.33
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 97.29
PRK00476588 aspS aspartyl-tRNA synthetase; Validated 97.24
PLN02903652 aminoacyl-tRNA ligase 97.23
PRK12820706 bifunctional aspartyl-tRNA synthetase/aspartyl/glu 97.21
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 97.05
PRK00484491 lysS lysyl-tRNA synthetase; Reviewed 97.04
PTZ00417585 lysine-tRNA ligase; Provisional 97.04
cd00775329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 97.03
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 96.99
cd0093845 HisRS_RNA HisRS_RNA binding domain. This short RNA 96.96
TIGR00470533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 96.93
PRK06462335 asparagine synthetase A; Reviewed 96.85
PRK05159437 aspC aspartyl-tRNA synthetase; Provisional 96.72
PF00152335 tRNA-synt_2: tRNA synthetases class II (D, K and N 96.72
PRK12445505 lysyl-tRNA synthetase; Reviewed 96.69
PLN02502553 lysyl-tRNA synthetase 96.67
cd0093945 MetRS_RNA MetRS_RNA binding domain. This short RNA 96.64
TIGR00462304 genX lysyl-tRNA synthetase-like protein GenX. Many 96.63
PTZ00385659 lysyl-tRNA synthetase; Provisional 96.62
TIGR00499496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 96.55
PF02403108 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom 96.51
PRK029831094 lysS lysyl-tRNA synthetase; Provisional 96.45
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 96.39
TIGR00458428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 96.38
PRK03932450 asnC asparaginyl-tRNA synthetase; Validated 96.23
PTZ00401550 aspartyl-tRNA synthetase; Provisional 95.83
KOG1035|consensus1351 95.75
PLN02850530 aspartate-tRNA ligase 95.48
PLN02603565 asparaginyl-tRNA synthetase 95.47
TIGR00457453 asnS asparaginyl-tRNA synthetase. In a multiple se 95.44
cd0093551 GlyRS_RNA GlyRS_RNA binding domain. This short RNA 94.93
PTZ00425586 asparagine-tRNA ligase; Provisional 94.58
PLN02532633 asparagine-tRNA synthetase 94.4
PLN02221572 asparaginyl-tRNA synthetase 93.86
COG1190502 LysU Lysyl-tRNA synthetase (class II) [Translation 93.42
COG0017435 AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl 91.64
cd0120042 WHEPGMRS_RNA EPRS-like_RNA binding domain. This sh 91.07
cd0093650 WEPRS_RNA WEPRS_RNA binding domain. This short RNA 88.52
COG2024536 Phenylalanyl-tRNA synthetase alpha subunit (archae 88.2
PLN02788402 phenylalanine-tRNA synthetase 86.41
PRK09616552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 83.28
cd00769198 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR 82.39
>PLN02734 glycyl-tRNA synthetase Back     alignment and domain information 
Probab=100.00  E-value=8.5e-155  Score=1301.44  Aligned_cols=669  Identities=52%  Similarity=0.856  Sum_probs=641.5

Q ss_pred             ChhHHhhhHHHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHhhcC----------CCCCCCChHHHHH
Q psy17941          3 DPKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLA----------PFVSSFDRAKMED   72 (679)
Q Consensus         3 ~~~~~~~~~~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~~~~~~~----------~~~~~~~~~~~~~   72 (679)
                      +..+..+++.|++.++.|+..||.||++++++.++.++++.|+.++..++..+..+.          +....+ ++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~   80 (684)
T PLN02734          2 EDSLRDALAEKQAAVTAQGNAVRALKASKADKAEIDAAIEKLKALKLEKSALEKELQAAVGAGGDGAASKEAF-RQAVVN   80 (684)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHhhhhhccCchHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccccchhHH-HHHHHH
Confidence            456778899999999999999999999999999999999999999988887754432          222224 899999


Q ss_pred             HHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeC
Q psy17941         73 LLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDL  152 (679)
Q Consensus        73 l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~  152 (679)
                      +|+||||++||||||||++|+|||||+||+|++||+++||+|||.+++|.||+||+|+|..||++|||+++|+|.|++|.
T Consensus        81 l~krRgF~~pSfeIYGGvaG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~kASGHvd~F~D~mv~~~  160 (684)
T PLN02734         81 TLERRLFYIPSFKIYGGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVLKASGHVDKFTDLMVKDE  160 (684)
T ss_pred             HHHhcCCccccccccCCcccccccCcchHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHeeecCCcccccceeeEcC
Confidence            99999999999999999999999999999999999999999999899999999999999999999999999999999999


Q ss_pred             CCCcccchhhhHHHHHHHhhcCC-CCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcc
Q psy17941        153 KTGECFRLDHLIKAHLEKLAAEP-KTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQ  231 (679)
Q Consensus       153 ~~~~~~r~d~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~  231 (679)
                      +||+|||||||+|+++++++.++ +++++..++++.+++.+++++.+||...|.+++|+||.|||+||+|++|||||+|.
T Consensus       161 ~~~~~~RADhlie~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~~~~el~~~i~~~~ik~P~~g~~l~~~~~FNLMF~T~  240 (684)
T PLN02734        161 KTGTCFRADHLLKDFCEEKLEKDLTISAEKAAELKDVLAVLDDLSAEELGAKIKEYGIKAPDTKNPLSDPYPFNLMFQTS  240 (684)
T ss_pred             CCCcEecchHHHHHHHHhhhccccccchHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCCCCeecccceeec
Confidence            99999999999999999988774 78888899999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhH
Q psy17941        232 IGPSGLIKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKF  311 (679)
Q Consensus       232 ig~~g~~~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~  311 (679)
                      |||+|+..+|||||||||||+||+|++++|+++|||+.||||++|||||+||+||+|+|||+|+|||+||+|+++.|+.|
T Consensus       241 IGp~~~~~~YLRPETAQGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~Fv~P~~k~h~~f  320 (684)
T PLN02734        241 IGPSGLSVGYMRPETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFVDPEDKSHPKF  320 (684)
T ss_pred             ccCcCCccceecccccchheeeHHHHHHhcCCCCCeeeeeccHhhhcccCcccceeeechhhhhhhheecCcccccccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccCc
Q psy17941        312 SDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDC  391 (679)
Q Consensus       312 ~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~  391 (679)
                      +.|.|+++ ++|++..|++|.....|++++|+++++|+|+|++||++++++||.++|++++++|||||+++||||||++|
T Consensus       321 ~~v~~~~l-~l~~~~~q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~iGi~~~~lRfRqh~~~EmAHYA~dc  399 (684)
T PLN02734        321 SEVADLEF-LLFPREEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTKLGIDKERLRFRQHLANEMAHYAADC  399 (684)
T ss_pred             hhhhhhhh-hcccHhhhhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHHcCCCHHHeeecccCcHHHhhhhhcc
Confidence            99999999 99999999999887899999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhhhcCH
Q psy17941        392 WDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDL  471 (679)
Q Consensus       392 ~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~~~~~  471 (679)
                      ||+|+++||||+||+|||||+||||+.|+++||.+|.+.++|++|.+++.+.+.++++.+|+.|++|++.|.++|..+++
T Consensus       400 wD~E~~~~~GWiE~vG~AdRs~yDL~~H~~~Sg~~L~~~~~~~ep~~~~~~~~~~~~~~~g~~fk~~~~~v~~~l~~~~~  479 (684)
T PLN02734        400 WDAEIECSYGWIECVGIADRSAYDLKAHSDKSKVPLVAHEKFAEPREVEVLVIVPNKKELGLAFKGDQKVVVEALEAMNE  479 (684)
T ss_pred             EeEEEecCCCcEEEEEeccccccchHHHHHhhCCCeEEEeccCCcceeeeEEEecchhhhhHHHHHHHHHHHHHHHhcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhhcCCcEEEeec--CceeeeccceeEEeeeecccceeEeccceeeccccHHHHHHHHHHhccccCCCcccc
Q psy17941        472 NSVSAVEESLNTNGKYELLVD--DKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNFKMRDGDEQR  549 (679)
Q Consensus       472 ~~~~~~~~~l~~~g~~~~~~~--g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s~GIeRll~al~e~~~~~~~~~~~r  549 (679)
                      ++...+...|+..|.+.+.++  |+.|+++++|+.+++++++++++.|+|+||++|||||||+++++|++++.+.+|++|
T Consensus       480 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~iP~VIEPS~GIgRIl~AilE~s~~~~~~De~R  559 (684)
T PLN02734        480 KEAMEMKAKLESKGEAEFYVCTLGKEVEIKKNMVSISKEKKKEHQRVFTPSVIEPSFGIGRIIYCLFEHSFYTRPGDEQL  559 (684)
T ss_pred             hHHHHHHHhhhhcCceeeeecccCcceeechhheeeeeeeeeecCceecCceEecCccHHHHHHHHHHHHhccccCCCcc
Confidence            999999999999999999887  999999999999999999999999999999999999999999999999888778899


Q ss_pred             ccccCCCCCCCceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCCCCCCe
Q psy17941        550 TYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTLKEPHS  629 (679)
Q Consensus       550 ~~l~~P~~laP~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El~~~g~  629 (679)
                      .+++||+++||++|.|+|+..+++..++|.+|++.||++|++|.+|+++.++|+||++|+++|+||+||||.     +|+
T Consensus       560 ~~L~~Pp~IAP~qVaIlPL~~~ee~~~~A~eLa~~LR~~GIrVelDd~~~SIGKRyrrADeiGIPf~ItIG~-----dgt  634 (684)
T PLN02734        560 NVFRFPPLVAPIKCTVFPLVQNQQLNAVAKVISKELTAAGISHKIDITGTSIGKRYARTDELGVPFAVTVDS-----DGS  634 (684)
T ss_pred             eEEecCcccCCcEEEEEEecCChHHHHHHHHHHHHHHhCCCEEEEECCCCCHhHHHHHHHHcCCCEEEEECC-----CCe
Confidence            999999999999999999987666889999999999999999999999999999999999999999999995     589


Q ss_pred             EEEEECCCCceEEEehHHHHHHHHHHHhcccchHHHHccCCCcccccCC
Q psy17941        630 VTLRERDSMTQVRVKVNEVASVIKDLSLAKITWEDVQSKYPKFEAQEGS  678 (679)
Q Consensus       630 Vtlr~r~t~~q~~v~i~el~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  678 (679)
                      |+||+|++++|.+++++++++.|.+++.+..+|+++.++||.|++|+++
T Consensus       635 VTIRdRdsgeQ~rV~ldeLv~~I~~li~~~~~w~~~~~~~~~~~~~~~~  683 (684)
T PLN02734        635 VTIRERDSKDQVRVPVEEVASVVKDLTDGRMTWEDVTAKYPAHSSAADD  683 (684)
T ss_pred             EEEEECCCCceEEeeHHHHHHHHHHHHcCCCCHHHHHhhCccccccccC
Confidence            9999999999999999999999999999999999999999999998754

>KOG2298|consensus Back     alignment and domain information
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14894 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG2324|consensus Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1637|consensus Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information
>KOG1936|consensus Back     alignment and domain information
>PLN02530 histidine-tRNA ligase Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>PLN02320 seryl-tRNA synthetase Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>KOG4163|consensus Back     alignment and domain information
>PRK00960 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>KOG2509|consensus Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain Back     alignment and domain information
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity Back     alignment and domain information
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea Back     alignment and domain information
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis Back     alignment and domain information
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain Back     alignment and domain information
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS) Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>PRK07080 hypothetical protein; Validated Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [] Back     alignment and domain information
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>KOG2411|consensus Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>PF00458 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A conserved domain of 46 amino acids, called WHEP-TRS has been shown [] to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK00476 aspS aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>PLN02903 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>cd00938 HisRS_RNA HisRS_RNA binding domain Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information
>cd00939 MetRS_RNA MetRS_RNA binding domain Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK02983 lysS lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>PTZ00401 aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG1035|consensus Back     alignment and domain information
>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>PLN02603 asparaginyl-tRNA synthetase Back     alignment and domain information
>TIGR00457 asnS asparaginyl-tRNA synthetase Back     alignment and domain information
>cd00935 GlyRS_RNA GlyRS_RNA binding domain Back     alignment and domain information
>PTZ00425 asparagine-tRNA ligase; Provisional Back     alignment and domain information
>PLN02532 asparagine-tRNA synthetase Back     alignment and domain information
>PLN02221 asparaginyl-tRNA synthetase Back     alignment and domain information
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd01200 WHEPGMRS_RNA EPRS-like_RNA binding domain Back     alignment and domain information
>cd00936 WEPRS_RNA WEPRS_RNA binding domain Back     alignment and domain information
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02788 phenylalanine-tRNA synthetase Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query679
2q5h_A691 Crystal Structure Of Apo-Wildtype Glycyl-Trna Synth 0.0
2pme_A693 The Apo Crystal Structure Of The Glycyl-Trna Synthe 0.0
2q5i_A691 Crystal Structure Of Apo S581l Glycyl-Trna Syntheta 0.0
2pmf_A693 The Crystal Structure Of A Human Glycyl-trna Synthe 0.0
1ati_A505 Crystal Structure Of Glycyl-Trna Synthetase From Th 2e-45
1ati_A505 Crystal Structure Of Glycyl-Trna Synthetase From Th 2e-15
1ggm_A442 Glycyl-Trna Synthetase From Thermus Thermophilus Co 7e-22
1ggm_A442 Glycyl-Trna Synthetase From Thermus Thermophilus Co 3e-15
>pdb|2Q5H|A Chain A, Crystal Structure Of Apo-Wildtype Glycyl-Trna Synthetase Length = 691 Back     alignment and structure 
Iteration: 1

 Score =  850 bits (2197), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/680 (59%), Positives = 510/680 (75%), Gaps = 2/680 (0%)
Query: 1   MTDPKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLAP 60
           M     E  LAPLR AV++QGD+VR LK + AP++DV KAVAELK RK+VL+ +EL L P
Sbjct: 1   MDGAGAEEVLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQP 60
Query: 61  FVSSFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQ 120
                DRAKMED LKRRFFYDQ+F+IYGG+SG YDFGP+GCALK N++  WRQ F+ EEQ
Sbjct: 61  KDDIVDRAKMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQ 120
Query: 121 MLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQS 180
           +LE+DC++LT EPVLK SGHVD+FAD MVKD+K GECFR DHL+KAHL+KL ++ K    
Sbjct: 121 ILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAHLQKLMSDKKCSVE 180
Query: 181 VKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKG 240
            K E   ++ +LD   + E+ D+   YN+KSP+T NDLS P+ FNLMF T IGP G + G
Sbjct: 181 KKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPG 240
Query: 241 YLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHF 300
           YLRPETAQGIF+NFKRLLEFN G+LPFAAAQIGN+FRNEISPRSGLIRVREFTMAEIEHF
Sbjct: 241 YLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHF 300
Query: 301 CDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARI 360
            DP++K H KF +V    +  LYSA  Q+ G+ A ++ +G+AV   ++ N  LGYF+ RI
Sbjct: 301 VDPSEKDHPKFQNVADLHLY-LYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRI 359
Query: 361 QKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHF 420
             ++  VGI P+KLRFRQHM NEMAHYACDCWDAE  TSYGW+E VGCADRS YDL+ H 
Sbjct: 360 YLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHA 419
Query: 421 KATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEES 480
           +AT V L AEK L EP+T  +V+   +KG IGK +KKDAK + + LA  D   ++ +E  
Sbjct: 420 RATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEML 479
Query: 481 LNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNF 540
           LN  G++ +  + K F LTKDMI++K+  KT +VEE++P+VIEPSFG+GRIMY +FEH F
Sbjct: 480 LNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTF 539
Query: 541 KMRDGDEQRTYXXXXXXXXXXXXSILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGS 600
            +R+GDEQRT+            S+LPLS N EF PF+K LS  L+++G+S KVDDS GS
Sbjct: 540 HVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGS 599
Query: 601 IGKRYARTDEIAIPFGITIDFDTL-KEPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAK 659
           IG+RYARTDEI + FG+TIDFDT+ K PH+ TLR+RDSM Q+R +++E+ S+++DL+   
Sbjct: 600 IGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLANGN 659
Query: 660 ITWEDVQSKYPKFEAQEGSK 679
           ITW DV+++YP FE QE  K
Sbjct: 660 ITWADVEARYPLFEGQETGK 679
>pdb|2PME|A Chain A, The Apo Crystal Structure Of The Glycyl-Trna Synthetase Length = 693 Back     alignment and structure
>pdb|2Q5I|A Chain A, Crystal Structure Of Apo S581l Glycyl-Trna Synthetase Mutant Length = 691 Back     alignment and structure
>pdb|2PMF|A Chain A, The Crystal Structure Of A Human Glycyl-trna Synthetase Mutant Length = 693 Back     alignment and structure
>pdb|1ATI|A Chain A, Crystal Structure Of Glycyl-Trna Synthetase From Thermus Thermophilus Length = 505 Back     alignment and structure
>pdb|1ATI|A Chain A, Crystal Structure Of Glycyl-Trna Synthetase From Thermus Thermophilus Length = 505 Back     alignment and structure
>pdb|1GGM|A Chain A, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed With Glycyl-Adenylate Length = 442 Back     alignment and structure
>pdb|1GGM|A Chain A, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed With Glycyl-Adenylate Length = 442 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query679
2zt5_A693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 0.0
1ati_A505 Glycyl-tRNA synthetase; protein biosynthesis, liga 1e-180
1g5h_A454 Mitochondrial DNA polymerase accessory subunit; in 1e-39
1g5h_A454 Mitochondrial DNA polymerase accessory subunit; in 6e-37
3ikl_A459 DNA polymerase subunit gamma-2, mitochondrial; tra 2e-39
3ikl_A459 DNA polymerase subunit gamma-2, mitochondrial; tra 2e-34
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
2djv_A79 Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS d 2e-08
1nj1_A501 PROR, proline-tRNA synthetase, proline--tRNA ligas 5e-08
1x59_A73 Histidyl-tRNA synthetase; hisrs, structural genomi 1e-06
1nj8_A459 Proline-tRNA synthetase, proline--tRNA ligase; cla 2e-06
1fyj_A57 Multifunctional aminoacyl-tRNA synthetase; helix-t 2e-06
1d2d_A59 TRNA synthetase, tRNA ligase; tRNA synthetase (lig 3e-06
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 5e-06
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 1e-04
2j3l_A572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 6e-06
1hc7_A477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 4e-05
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 1e-04
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Length = 693 Back     alignment and structure
 Score =  858 bits (2217), Expect = 0.0
 Identities = 406/680 (59%), Positives = 516/680 (75%), Gaps = 2/680 (0%)

Query: 1   MTDPKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLAP 60
           M     E  LAPLR AV++QGD+VR LK + AP++DV KAVAELK RK+VL+ +EL L P
Sbjct: 1   MDGAGAEEVLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQP 60

Query: 61  FVSSFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQ 120
                DRAKMED LKRRFFYDQ+F+IYGG+SG YDFGP+GCALK N++  WRQ F+ EEQ
Sbjct: 61  KDDIVDRAKMEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQ 120

Query: 121 MLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQS 180
           +LE+DC++LT EPVLK SGHVD+FAD MVKD+K GECFR DHL+KAHL+KL ++ K    
Sbjct: 121 ILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRADHLLKAHLQKLMSDKKCSVE 180

Query: 181 VKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKG 240
            K E   ++ +LD   + E+ D+   YN+KSP+T NDLS P+ FNLMF T IGP G + G
Sbjct: 181 KKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPG 240

Query: 241 YLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHF 300
           YLRPETAQGIF+NFKRLLEFN G+LPFAAAQIGN+FRNEISPRSGLIRVREFTMAEIEHF
Sbjct: 241 YLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHF 300

Query: 301 CDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARI 360
            DP++K H KF +V    +  LYSA  Q+ G+ A ++ +G+AV   ++ N  LGYF+ RI
Sbjct: 301 VDPSEKDHPKFQNVADLHLY-LYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRI 359

Query: 361 QKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHF 420
             ++  VGI P+KLRFRQHM NEMAHYACDCWDAE  TSYGW+E VGCADRS YDL+ H 
Sbjct: 360 YLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCYDLSCHA 419

Query: 421 KATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEES 480
           +AT V L AEK L EP+T  +V+   +KG IGK +KKDAK + + LA  D   ++ +E  
Sbjct: 420 RATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEML 479

Query: 481 LNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNF 540
           LN  G++ +  + K F LTKDMI++K+  KT +VEE++P+VIEPSFG+GRIMY +FEH F
Sbjct: 480 LNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTF 539

Query: 541 KMRDGDEQRTYLALPPLVAPLKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGS 600
            +R+GDEQRT+ + P +VAP K S+LPLS N EF PF+K LS  L+++G+S KVDDS GS
Sbjct: 540 HVREGDEQRTFFSFPAVVAPFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGS 599

Query: 601 IGKRYARTDEIAIPFGITIDFDTLK-EPHSVTLRERDSMTQVRVKVNEVASVIKDLSLAK 659
           IG+RYARTDEI + FG+TIDFDT+   PH+ TLR+RDSM Q+R +++E+ S+++DL+   
Sbjct: 600 IGRRYARTDEIGVAFGVTIDFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLANGN 659

Query: 660 ITWEDVQSKYPKFEAQEGSK 679
           ITW DV+++YP FE QE  K
Sbjct: 660 ITWADVEARYPLFEGQETGK 679
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Length = 505 Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Length = 454 Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Length = 454 Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Length = 459 Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Length = 459 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Length = 501 Back     alignment and structure
>1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Length = 459 Back     alignment and structure
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3 Length = 57 Back     alignment and structure
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A Length = 59 Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Length = 458 Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Length = 458 Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Length = 572 Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Length = 477 Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Length = 288 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query679
2zt5_A693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 100.0
1ati_A505 Glycyl-tRNA synthetase; protein biosynthesis, liga 100.0
3ikl_A459 DNA polymerase subunit gamma-2, mitochondrial; tra 100.0
1g5h_A454 Mitochondrial DNA polymerase accessory subunit; in 100.0
2j3l_A572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 100.0
3uh0_A460 Threonyl-tRNA synthetase, mitochondrial; threonine 100.0
1evl_A401 Threonyl-tRNA synthetase; amino acid recognition, 100.0
1nyr_A645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 100.0
1qf6_A642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 100.0
2i4l_A458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 100.0
1hc7_A477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1nj1_A501 PROR, proline-tRNA synthetase, proline--tRNA ligas 100.0
4hvc_A519 Bifunctional glutamate/proline--tRNA ligase; ligas 100.0
3ial_A518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1nj8_A459 Proline-tRNA synthetase, proline--tRNA ligase; cla 100.0
3a32_A471 Probable threonyl-tRNA synthetase 1; aeropyrum per 100.0
1qe0_A420 Histidyl-tRNA synthetase; class II tRNA synthetase 100.0
4g85_A517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 100.0
4e51_A467 Histidine--tRNA ligase; seattle structural genomic 100.0
1htt_A423 Histidyl-tRNA synthetase; complex (tRNA synthetase 100.0
1h4v_B421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 100.0
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
4g84_A464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 100.0
1wu7_A434 Histidyl-tRNA synthetase; ligase, structural genom 100.0
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 100.0
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 100.0
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 100.0
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 100.0
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 100.0
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 100.0
3net_A465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 100.0
3lc0_A456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 100.0
3err_A536 Fusion protein of microtubule binding domain from 100.0
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 100.0
3od1_A400 ATP phosphoribosyltransferase regulatory subunit; 99.96
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 99.93
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 99.93
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 99.88
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 99.62
1v95_A130 Nuclear receptor coactivator 5; coactivator indepe 99.52
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 99.35
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 99.01
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 98.9
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 98.36
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 98.18
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 98.16
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 98.15
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 97.96
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 97.82
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 97.71
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 97.42
1c0a_A585 Aspartyl tRNA synthetase; protein-RNA complex, lig 97.4
1l0w_A580 Aspartyl-tRNA synthetase; space-grown crystal, dim 97.4
4ah6_A617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 97.3
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 97.19
3bju_A521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 97.16
3nem_A438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 97.12
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 97.05
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 96.82
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 96.76
3m4p_A456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 96.61
2du3_A534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 96.58
1fyj_A57 Multifunctional aminoacyl-tRNA synthetase; helix-t 96.56
2djv_A79 Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS d 96.52
1d2d_A59 TRNA synthetase, tRNA ligase; tRNA synthetase (lig 96.3
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 95.77
2odr_B648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 95.54
2odr_A665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 95.5
2odr_D685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 95.25
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 95.0
2odr_C701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 94.94
2du7_A549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 94.45
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 90.13
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 87.0
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 85.79
1x59_A73 Histidyl-tRNA synthetase; hisrs, structural genomi 83.69
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Back     alignment and structure
Probab=100.00  E-value=2e-130  Score=1135.65  Aligned_cols=676  Identities=60%  Similarity=1.021  Sum_probs=508.4

Q ss_pred             CCChhHHhhhHHHHHHHHHHhHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHhhcCCCCCCCChHHHHHHHHHhccc
Q psy17941          1 MTDPKVEAELAPLRAAVKEQGDIVRALKAEGAPELDVKKAVAELKLRKKVLDERELKLAPFVSSFDRAKMEDLLKRRFFY   80 (679)
Q Consensus         1 ~~~~~~~~~~~~l~a~~~~~~~~v~~lk~~~~~~~~i~~~v~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~l~~r~~f~   80 (679)
                      |++..+...++++++.+.+|++.||+||++++++.+|+++|++|+++++.++..+..+.+.+.+++++++++||+|+||+
T Consensus         1 ~~~~~~~~~l~~~~~~v~~~~~~vr~lk~~~a~~~~i~~av~~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~r~gf~   80 (693)
T 2zt5_A            1 MDGAGAEEVLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVDRAKMEDTLKRRFFY   80 (693)
T ss_dssp             ---------------------------------------------------------------CCCHHHHHHHHHHTTSE
T ss_pred             CCchhHHHHHHHHHHHHHHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhhhhccccccccccHHHHHHHHHhCCCc
Confidence            66778889999999999999999999999999999999999999999999887655555667789999999999999999


Q ss_pred             cchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhhhhCceEeecCcccchhhhhhcCCcccccCCceeeCCCCcccch
Q psy17941         81 DQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLEEQMLEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRL  160 (679)
Q Consensus        81 ~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~~~g~~ev~~P~l~~~~v~~~SGh~~~f~d~m~~d~~~~~~~r~  160 (679)
                      +|+++||||++|+|||+|.|+++++||+++||++|+.+.||+||+||+|+|.+||++||||++|+|+|+++.+++++||+
T Consensus        81 ~~~~eiy~g~~G~~d~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lwk~SGH~~~f~d~m~~~~~~~e~yr~  160 (693)
T 2zt5_A           81 DQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRA  160 (693)
T ss_dssp             EETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHHHTHHHHCEEEEEEBSSSCCEEEH
T ss_pred             ccchhhcCCCCCeEEECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHHhhcCCcccccccceeeccCCceeec
Confidence            99999999999999999999999999999999999447799999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCCCCCCCchhhhhhhhcccCCCCCccc
Q psy17941        161 DHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTKNDLSEPMEFNLMFATQIGPSGLIKG  240 (679)
Q Consensus       161 d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~~~~~~~~~fnlmf~~~ig~~g~~~~  240 (679)
                      |||++++++++|+|++++++...+++.+++.+++||+||+.+++.+++|+||.|||+||+|++|||||+|+|||+|++.+
T Consensus       161 D~l~e~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlmf~t~igp~~~~~~  240 (693)
T 2zt5_A          161 DHLLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPG  240 (693)
T ss_dssp             HHHHHHHHHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCEEECSSSSSSEE
T ss_pred             cHhHHHHHHHhhccccccHHHHHHHHHHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhheeeeccccCCCCcce
Confidence            99999999999999888999899999999999999999988888888999999999999999999999999999999999


Q ss_pred             ccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEeCCCcchhhhHHHHHHHHHH
Q psy17941        241 YLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFCDPTDKSHAKFSDVETTQMM  320 (679)
Q Consensus       241 yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~~~~~~~~~~~~~v~d~~~~  320 (679)
                      |||||||||+|+||+|++.+|+++|||++||||++||||+|||+||+|+|||+|+|+|+||+|++..|++|+.|.|+|+ 
T Consensus       241 ~LRPEtaqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~F~~p~~~~~~~y~~v~da~~-  319 (693)
T 2zt5_A          241 YLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHL-  319 (693)
T ss_dssp             EECSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEEECTTCCCCTTGGGTTTCEE-
T ss_pred             eeccccchHHHHHHHHHHHHhCcCCCEEEEeecceecCCCCCCCCCccceeeEEccceEEeCcchhcchhHHHHHHHHH-
Confidence            9999999999999999999988999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccCccccccccCccchhhhccC
Q psy17941        321 VLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSY  400 (679)
Q Consensus       321 ~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~~e~~~ya~~~~d~e~~~~~  400 (679)
                      ++|.+++|+||..++.+++.+|++.+++.+++++||++.+..|+..+|+++..++|++|+.++|+||+.+|||+|+++++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~~~~~~~e~a~ya~~~~d~e~~~~~  399 (693)
T 2zt5_A          320 YLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSY  399 (693)
T ss_dssp             EEECHHHHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEECCGGGSCTTCSSEEEEEEEETT
T ss_pred             hhhhhhhhccccccccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcCccEEEEeccCchhhccchhhhhhehhhccC
Confidence            99999999999999999999999999999999999999999999999999999999999888999999999999999999


Q ss_pred             CceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhHHHHHhhhcCHhHHHHHHHh
Q psy17941        401 GWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKTICDALAALDLNSVSAVEES  480 (679)
Q Consensus       401 g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~i~d~L~~~~~~~~~~~~~~  480 (679)
                      ||.||++|++|++|||+.|...++.+|.+...+++|..++.+.+.++.+..|++|.+++|.|.|+|+..+++++..+...
T Consensus       400 g~~e~~~~a~r~~~dL~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~g~~i~~~Ap~i~d~L~~~~~~~~~~l~~~  479 (693)
T 2zt5_A          400 GWIEIVGCADRSCYDLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAIGKAYKKDAKLVMEYLAICDECYITEMEML  479 (693)
T ss_dssp             EEEEEEEEECCCSHHHHHHHHHHTCCCCEEEC------------------------------------------------
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhccchhhhcccCcccceeeeeecCChHHHHHHHHhcccHHHHHhhhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999888777777899999999999999999888889999999


Q ss_pred             hhcCCcEEEeecCceeeeccceeEEeeeecccceeEeccceeeccccHHHHHHHHHHhccccCCCccccccccCCCCCCC
Q psy17941        481 LNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNFKMRDGDEQRTYLALPPLVAP  560 (679)
Q Consensus       481 l~~~g~~~~~~~g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s~GIeRll~al~e~~~~~~~~~~~r~~l~~P~~laP  560 (679)
                      |...|.++++++|..|++..+++.+++|.....|++|+|+|+|+||||||++++|++++++.+..+++|+++.||+++||
T Consensus       480 L~~~g~i~i~vdGt~Fei~~~~~~~~~y~~~~~Ggry~P~Vi~~s~GigRli~aLie~~~~~~~~~~~r~g~~~P~~lAP  559 (693)
T 2zt5_A          480 LNEKGEFTIETEGKTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSFGLGRIMYTVFEHTFHVREGDEQRTFFSFPAVVAP  559 (693)
T ss_dssp             --------------------------------CCEEECCEEEEEEEEHHHHHHHHHHHHEEECSSTTCCEEECCCTTTSS
T ss_pred             HHhcCCEEEEECCEEEEecccccceeeEEeccCCcEecCcceeCeehHHHHHHHHHHHhccccccccccccccCCCCCCC
Confidence            98888888888888899998877777777778899999999999999999999999987775554566777899999999


Q ss_pred             ceEEEEecCCCCChHHHHHHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHhCCCEEEEEeCCCC--CCCCeEEEEECCCC
Q psy17941        561 LKASILPLSSNPEFQPFIKMLSSELSQNGISFKVDDSGGSIGKRYARTDEIAIPFGITIDFDTL--KEPHSVTLRERDSM  638 (679)
Q Consensus       561 ~~V~Vi~l~~~~e~~~~a~~l~~~Lr~~Gi~v~~D~~~~slgkq~k~Ad~~Gip~~IiVG~~El--~~~g~Vtlr~r~t~  638 (679)
                      ++|+|+|+++++++.++|.+|++.||++||+|++|+++.++|+||++|+++|+||+||||++|+  + +|+|+||+|+|+
T Consensus       560 ~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~~~sigkk~k~Ad~~G~p~~IiIG~~El~~~-~g~Vtvr~r~t~  638 (693)
T 2zt5_A          560 FKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDSSGSIGRRYARTDEIGVAFGVTIDFDTVNKT-PHTATLRDRDSM  638 (693)
T ss_dssp             CSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCCCSCHHHHHHHHHHTTCCEEEEECHHHHTSS-SCEEEEEETTTC
T ss_pred             CeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEEcchhhhcc-CCEEEEEECCCC
Confidence            9999999986556889999999999999999999999999999999999999999999999998  6 899999999999


Q ss_pred             ceEEEehHHHHHHHHHHHhcccchHHHHccCCCcccccCC
Q psy17941        639 TQVRVKVNEVASVIKDLSLAKITWEDVQSKYPKFEAQEGS  678 (679)
Q Consensus       639 ~q~~v~i~el~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  678 (679)
                      +|.+|+++++++.|.+++.+..||+++.++||.|++|+++
T Consensus       639 eq~~v~l~el~~~l~~~l~~~~~w~~~~~~~~~~~~~~~~  678 (693)
T 2zt5_A          639 RQIRAEISELPSIVQDLANGNITWADVEARYPLFEGQETG  678 (693)
T ss_dssp             CEEEEETTTHHHHHHHHHTTSSCHHHHHHHSCBCC-----
T ss_pred             ceEEEeHHHHHHHHHHHHhCcccHHHHHHhccchhccccc
Confidence            9999999999999999999999999999999999998543
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1 Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Back     alignment and structure
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3 Back     alignment and structure
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Back     alignment and structure
>1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 679
d1atia2394 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) 1e-112
d1g5ha2290 d.104.1.1 (A:41-330) The aaRS-like accessory subun 2e-52
d1g5ha2290 d.104.1.1 (A:41-330) The aaRS-like accessory subun 3e-05
d1b76a2331 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) 3e-29
d1b76a2331 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) 5e-23
d1b76a2331 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) 1e-12
d1g5ha1127 c.51.1.1 (A:343-469) The aaRS-like accessory subun 3e-16
d1atia1111 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS 2e-13
d1nyra1113 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (Thr 1e-11
d1qe0a195 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (His 3e-11
d1nj1a1127 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS 4e-11
d1qf6a1110 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (Thr 5e-11
d1nj8a1126 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS 2e-10
d1fyja_57 a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthas 5e-09
d1h4vb196 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (His 1e-08
d1d2da_56 a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthas 3e-08
d1kmma199 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (His 3e-08
d1r6ta154 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic 1e-07
d1wu7a197 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (His 3e-06
d1hc7a1127 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS 2e-05
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Length = 394 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Glycyl-tRNA synthetase (GlyRS)
species: Thermus thermophilus [TaxId: 274]

 Score =  340 bits (874), Expect = e-112
 Identities = 127/397 (31%), Positives = 176/397 (44%), Gaps = 53/397 (13%)

Query: 63  SSFDRAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVLE-EQM 121
           SS D  ++  L KRR F  QS  IYGG+ G YD+GP+G  LK N+  AW +  V E + M
Sbjct: 3   SSLD--ELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDM 60

Query: 122 LEVDCSILTLEPVLKASGHVDRFADLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSV 181
             +D S+LT   VL  SGH   FAD MV +  T + +RLDHL+K   E++         V
Sbjct: 61  EGLDASVLTHRLVLHYSGHEATFADPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEV 120

Query: 182 KEECADIVIKLDGMSKNEMDDVLKKYNIKSPLT--KNDLSEPMEFNLMFATQIGPSGL-- 237
           +EE    +++    +       +    +  P +    D + P  FN+MF    GP G   
Sbjct: 121 EEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRG 180

Query: 238 IKGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEI 297
           +  YLRPETAQGIFVNFK +L+  S +L F  AQIG AFRNEI+PR+ + RVREF   EI
Sbjct: 181 LLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEI 240

Query: 298 EHFCDPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFM 357
           E+F  P +                                                 Y++
Sbjct: 241 EYFVRPGED-------------------------------------------EYWHRYWV 257

Query: 358 ARIQKFMISVGIDPEKLRFRQHMGNEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLT 417
               K+   +G+  E L   Q      AHYA    D      +G +E  G A R+ +DL 
Sbjct: 258 EERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLG 317

Query: 418 QHFKATGVRLSAEKHLPEPQTRE---IVEPVLNKGII 451
            H K         + L    + +     +P   K  +
Sbjct: 318 SHTKDQEALGITARVLRNEHSTQRLAYRDPETGKWFV 354
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 290 Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 290 Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Length = 331 Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Length = 331 Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Length = 331 Back     information, alignment and structure
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 127 Back     information, alignment and structure
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 111 Back     information, alignment and structure
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 113 Back     information, alignment and structure
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 95 Back     information, alignment and structure
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Length = 127 Back     information, alignment and structure
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 110 Back     information, alignment and structure
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Length = 126 Back     information, alignment and structure
>d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Human (Homo sapiens) [TaxId: 9606]} Length = 57 Back     information, alignment and structure
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 96 Back     information, alignment and structure
>d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 56 Back     information, alignment and structure
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 99 Back     information, alignment and structure
>d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 54 Back     information, alignment and structure
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 97 Back     information, alignment and structure
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]} Length = 127 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query679
d1atia2394 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 100.0
d1b76a2331 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 100.0
d1g5ha2290 The aaRS-like accessory subunit of mitochondrial p 100.0
d1nyra4291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 100.0
d1qf6a4291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 99.97
d1nj1a3265 Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth 99.96
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 99.96
d1seta2311 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 99.94
d1hc7a2272 Prolyl-tRNA synthetase (ProRS) {Thermus thermophil 99.92
d1g5ha1127 The aaRS-like accessory subunit of mitochondrial p 99.87
d1qf6a1110 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 99.86
d1nyra1113 Threonyl-tRNA synthetase (ThrRS), C-terminal domai 99.86
d1nj1a1127 Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Me 99.85
d1nj8a1126 Prolyl-tRNA synthetase (ProRS) domain {Archaeon (M 99.82
d1hc7a1127 Prolyl-tRNA synthetase (ProRS) domain {Thermus the 99.77
d1atia1111 Glycyl-tRNA synthetase (GlyRS), C-terminal domain 99.76
d1kmma199 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.71
d1wu7a197 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.7
d1h4vb2324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 99.69
d1kmma2322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 99.69
d1qe0a195 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.66
d1h4vb196 Histidyl-tRNA synthetase (HisRS), C-terminal domai 99.66
d1qe0a2325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 99.65
d1z7ma1318 ATP phosphoribosyltransferase regulatory subunit H 99.65
d1wu7a2327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 99.63
d1usya_275 ATP phosphoribosyltransferase regulatory subunit H 98.74
d1v95a_130 Nuclear receptor coactivator 5 (KIAA1637) {Human ( 97.56
d1eova2353 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 97.38
d1fyja_57 Multifunctional Glu-Pro-tRNA synthase (EPRS) secon 97.32
d1nnha_293 Hypothetical protein PF1951 {Archaeon Pyrococcus f 97.25
d1c0aa3346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 97.21
d1b8aa2335 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 97.15
d1r6ta154 N-terminal domain of eukaryotic tryptophanyl-tRNA 97.14
d1e1oa2342 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 97.05
d1d2da_56 Multifunctional Glu-Pro-tRNA synthase (EPRS) secon 96.85
d1l0wa3356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 96.76
d1n9wa2304 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 96.68
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 96.54
d1seta1110 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 94.01
d1jjcb5207 Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, 84.93
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Glycyl-tRNA synthetase (GlyRS)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=8.5e-96  Score=778.44  Aligned_cols=383  Identities=36%  Similarity=0.511  Sum_probs=285.9

Q ss_pred             hHHHHHHHHHhccccchhhhcCCCCcceeeCcchHHHHHHHHHHHHHHHhh-hhCceEeecCcccchhhhhhcCCccccc
Q psy17941         67 RAKMEDLLKRRFFYDQSFSIYGGISGQYDFGPMGCALKTNMLSAWRQFFVL-EEQMLEVDCSILTLEPVLKASGHVDRFA  145 (679)
Q Consensus        67 ~~~~~~l~~r~~f~~~~~ei~~~~~G~~d~~P~G~~l~~~i~~~~r~~~~~-~~g~~ev~~P~l~~~~v~~~SGh~~~f~  145 (679)
                      -+++.+|||||||++||+|||||++|+|||||+|++|++||++.||++||. +.++.+|+||+|+|..||++|||+++|+
T Consensus         5 ~e~i~~l~KRRgFv~pS~EIYGGlaG~yDyGPlG~~LK~Ni~~~Ww~~fv~~~e~~~~id~~ii~p~~V~kASGHv~~F~   84 (394)
T d1atia2           5 LDELVALCKRRGFIFQSSEIYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFA   84 (394)
T ss_dssp             HHHHHHHHHHTTSEEETTGGGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHHHHCE
T ss_pred             HHHHHHHHHhcCCcccChhhccCcccccCcCccHHHHHHHHHHHHHHHHhhccCCEEEecccccCCHHHhhhcCCCCCCc
Confidence            367888999999999999999999999999999999999999999999975 6899999999999999999999999999


Q ss_pred             CCceeeCCCCcccchhhhHHHHHHHhhcCCCCCchhhhHHHHHHHhhcCCChHHHHHHHHhcCCCCCCCC--CCCCCchh
Q psy17941        146 DLMVKDLKTGECFRLDHLIKAHLEKLAAEPKTPQSVKEECADIVIKLDGMSKNEMDDVLKKYNIKSPLTK--NDLSEPME  223 (679)
Q Consensus       146 d~m~~d~~~~~~~r~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ee~~~~~~~~~i~~P~~~--~~~~~~~~  223 (679)
                      |.|++|.+++++||||||+++.+++.+.+.....+...+....+...+..+.+++...+.+++|+||.||  ++||+|.+
T Consensus        85 D~mv~c~~~~~~~RaD~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~~g~~~~~t~~~~  164 (394)
T d1atia2          85 DPMVDNRITKKRYRLDHLLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRY  164 (394)
T ss_dssp             EEEEEC--------------------------------------------------------------------CCCCEE
T ss_pred             ccccccCCCCceecchhHHhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhChHhhhhhHHhhCCCCCCCCCcCCcCccch
Confidence            9999999999999999999999988877654444444444444455666777888889999999999999  68999999


Q ss_pred             hhhhhhcccCCCCCc--ccccCccchhhHHHHHHHhhhhccCCCCeeeecccccccCCCCCCCCcccccceeEeeEEEEe
Q psy17941        224 FNLMFATQIGPSGLI--KGYLRPETAQGIFVNFKRLLEFNSGRLPFAAAQIGNAFRNEISPRSGLIRVREFTMAEIEHFC  301 (679)
Q Consensus       224 fnlmf~~~ig~~g~~--~~yLRPE~aqgi~~~f~~~l~~~~~~LP~~~~qig~~FR~E~~pr~Gl~R~REF~q~e~~~F~  301 (679)
                      |||||+|.|||+++.  .+|||||||||||+||++++++++++|||++||||++|||||+||+||+|+|||+|+||++||
T Consensus       165 FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnF~~~l~~~r~KlPFGiAQIGk~FRNEIsPr~~l~R~REF~q~EiE~Fv  244 (394)
T d1atia2         165 FNMMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFV  244 (394)
T ss_dssp             EECBEEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEE
T ss_pred             hhhhccccccccccccceeEEChhhhhHHHHHHHHHHHHcccCCCceeeeeccccccccCcccCCcccccceeeeeEEEE
Confidence            999999999998764  799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcchhhhHHHHHHHHHHHHHHHhhccCCCCceEEeecccccccccccccHHHHHHHHHHHHHHcCCCccchhhhhccC
Q psy17941        302 DPTDKSHAKFSDVETTQMMVLYSACNQMDGKPAERITIGEAVRSNLVANETLGYFMARIQKFMISVGIDPEKLRFRQHMG  381 (679)
Q Consensus       302 ~~~~~~~~~~~~v~d~~~~~lf~~~~~~~g~~~~~~~~~~a~~~~~i~~~~l~~~~~~~~~~l~~~g~~~~~~~~r~~~~  381 (679)
                      +|.+..                                           +|++||++++..|+.++|++++++|||+|++
T Consensus       245 ~P~~~~-------------------------------------------~~~~yw~~~~~~f~~~lGi~~~~lrfrqh~~  281 (394)
T d1atia2         245 RPGEDE-------------------------------------------YWHRYWVEERLKWWQEMGLSRENLVPYQQPP  281 (394)
T ss_dssp             CGGGHH-------------------------------------------HHHHHHHHHHHHHHHHTTCCGGGEEEEECCT
T ss_pred             eCCcch-------------------------------------------HHHHHHHHHHHHHHHHhcCCccceeEEeecc
Confidence            998763                                           3578999999999999999999999999999


Q ss_pred             ccccccccCccchhhhccCCceeeeeccccchhhHhHHHHHhCCcccccccCCCCccceeecccCcccccCccccchhhH
Q psy17941        382 NEMAHYACDCWDAECLTSYGWVECVGCADRSAYDLTQHFKATGVRLSAEKHLPEPQTREIVEPVLNKGIIGKEFKKDAKT  461 (679)
Q Consensus       382 ~e~~~ya~~~~d~e~~~~~g~~e~~~~~~r~~~dl~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~~~~~  461 (679)
                      +||||||.+|||+|+.+|+||+||+|||+|+||||+.|.+.++..+.+...+.+|...                      
T Consensus       282 ~ElAHYa~~~~DiE~~fp~Gw~El~GiA~RtdyDL~~H~k~~~~~~~~~~~~~~~~s~----------------------  339 (394)
T d1atia2         282 ESSAHYAKATVDILYRFPHGSLELEGIAQRTDFDLGSHTKDQEALGITARVLRNEHST----------------------  339 (394)
T ss_dssp             TTSCTTCSEEEEEEEEETTEEEEEEEEEECTTHHHHHHCSSTTTTTCCSCCCCCSCCC----------------------
T ss_pred             hhhhhcccceEEEEEecCCCcEechhhhccchhhHHHHhhhccccchhhhhhcCCCcc----------------------
Confidence            9999999999999999999999999999999999999998877765543333222110                      


Q ss_pred             HHHHhhhcCHhHHHHHHHhhhcCCcEEEeecCceeeeccceeEEeeeecccceeEeccceeeccccHHHHHHHHHHhccc
Q psy17941        462 ICDALAALDLNSVSAVEESLNTNGKYELLVDDKEFVLTKDMISIKKSTKTFHVEEIIPSVIEPSFGIGRIMYALFEHNFK  541 (679)
Q Consensus       462 i~d~L~~~~~~~~~~~~~~l~~~g~~~~~~~g~~f~i~~~~v~~~~y~~~~~~~~~~P~vi~~s~GIeRll~al~e~~~~  541 (679)
                                                      ++      |    .|.+...+++|+|+||++|+||||++++++++++.
T Consensus       340 --------------------------------~~------l----~~~d~~~~~~~iPhVIEPS~GldR~~la~L~~ay~  377 (394)
T d1atia2         340 --------------------------------QR------L----AYRDPETGKWFVPYVIEPSAGVDRGVLALLAEAFT  377 (394)
T ss_dssp             --------------------------------SC------C----CEECSSSCCEECCEEEEEEEEHHHHHHHHHHHHEE
T ss_pred             --------------------------------ce------e----EEEccCCCcEEeeeEEEcCCCccHHHHHHHHHHhh
Confidence                                            00      0    02333456789999999999999999999999986


Q ss_pred             cCC--CccccccccCCC
Q psy17941        542 MRD--GDEQRTYLALPP  556 (679)
Q Consensus       542 ~~~--~~~~r~~l~~P~  556 (679)
                      +.+  ++++|+|+++||
T Consensus       378 eee~~~~e~R~vLkl~P  394 (394)
T d1atia2         378 REELPNGEERIVLKLKP  394 (394)
T ss_dssp             EEECTTSCEEEEECCCG
T ss_pred             hhhcCCCCceEEEecCC
Confidence            554  468999999985
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase (EPRS) second repeated element {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure