Psyllid ID: psy17953

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
Protein Sequence
MIKITKWWLCPKDRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP
Secondary Structure (PSIPRED)
cccccccEEcccccEEEEEEcccccccccccccccccEEEEEEEEcccccEEEEEEEEccccccccccccccccccccccccHHHHHccccccccccccEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEccccEccccccEEEEEccccccccccccccccEccEEEEEEcccHHHEEEEEEEccccccccccccccccccccHHHHHHHHHHcccccccccEEEEEEcccccccccccccccccccccHHEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
mikitkwwlcpkdRRVRLLLskghscyrprrtgerkrksvrgcivdsnLSVLALVVVRkgeqeipgltdttiprrlgpkRASKIRKLFnlskeddvRQYVIkrtlppkpakegkKKVRKlykapkiqrlitpVTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDErkrrrssslrlstassepaakkpapaapvtkaapapaaqakgakgaaaapvgptnlp
Flexible Loop (DISEMBL)
mikitkwwlcpkdrrvrlllskghscyrprrtgerkrksvrgcivdsnlsVLALVVvrkgeqeipgltdttiprrlgpkraskirklfnlskeddvrqyvikrtlppkpakegkkkvrklykapkiqrlitpvtlqrkrhllalkkrrclkrKEQAAEYAKLLAIrikekkkakederkrrrssslrlstassepaakkpapaapVTKAAPAPAAQAKGAKgaaaapvgptnlp
Low Complexity Region (SEG)
MIKITKWWLCPKDRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVTlqrkrhllalkkrrclkrkEQAAEYakllairikekkkakederkrrrssslrlstassepaakkpapaapvtkaapapaaqakgakgaaaapvgptNLP
Disordered region (IsUnstruct)
**KITKWWLCPKDRRVRLLLSKGHSCYRP*********SVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTI************RKLFNL****DVRQYVIK****************KLYKAPKIQRLITPVTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRI*******************************************************************
Disordered Region (DISOPRED)
*IKITKWWLCPKDRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIK*******************KAPKIQRLITPVTLQRKRHL*****************YAK*************************************************************************
Disordered Region (DISEMBL)
MIKITKWWLCPKDRRVRLLLSKGHSCYRP**********VRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPK**********KLYKAPKIQRLITPVTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKE*****************************************************************
Disordered Region (DISPRO)
MIKITKWWLCPKDRRVRLLLSKGHSCYRP**TGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKP*******VRKLYKAPKIQRLITPVTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKK**************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIKITKWWLCPKDRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	234	2.2.26 [Sep-21-2011]
Q95V32	253	40S ribosomal protein S6	N/A	N/A	0.777	0.719	0.729	6e-63
P62755	249	40S ribosomal protein S6	yes	N/A	0.756	0.710	0.724	7e-63
P62754	249	40S ribosomal protein S6	yes	N/A	0.756	0.710	0.724	7e-63
Q4R4K6	249	40S ribosomal protein S6	N/A	N/A	0.756	0.710	0.724	7e-63
P62753	249	40S ribosomal protein S6	yes	N/A	0.756	0.710	0.724	7e-63
P47838	249	40S ribosomal protein S6	yes	N/A	0.756	0.710	0.718	1e-62
P39017	249	40S ribosomal protein S6	N/A	N/A	0.756	0.710	0.724	1e-62
Q94624	253	40S ribosomal protein S6	N/A	N/A	0.786	0.727	0.721	1e-62
Q5E995	249	40S ribosomal protein S6	no	N/A	0.756	0.710	0.718	2e-62
O01727	244	40S ribosomal protein S6	yes	N/A	0.730	0.700	0.706	2e-61

>sp|Q95V32|RS6_SPOFR 40S ribosomal protein S6 OS=Spodoptera frugiperda GN=RpS6 PE=2 SV=1

 Score =  240 bits (612), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 135/185 (72%), Positives = 156/185 (84%), Gaps = 3/185 (1%)

Query: 15  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
           RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+NLSVLALV+VRKGEQEIPGLTD  +PR
Sbjct: 72  RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGEQEIPGLTDGNVPR 131

Query: 75  RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
           RLGPKRASKIRKLFNLSKEDDVR+YV+KR L   PAKEGK+  +  YKAPKIQRL+TPV 
Sbjct: 132 RLGPKRASKIRKLFNLSKEDDVRRYVVKRLL---PAKEGKENAKPRYKAPKIQRLVTPVV 188

Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSE 194
           LQR+RH LALKK+R  KRK+   +YAKLLA R KE K  +++E KRRRS+S+R S +S +
Sbjct: 189 LQRRRHRLALKKKRLAKRKQSENDYAKLLAQRKKESKVRRQEELKRRRSASMRDSKSSDK 248

Query: 195 PAAKK 199
            A +K
Sbjct: 249 SAPQK 253

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.
Spodoptera frugiperda (taxid: 7108)

>sp|P62755|RS6_RAT 40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1

 Score =  240 bits (612), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 134/185 (72%), Positives = 153/185 (82%), Gaps = 8/185 (4%)

Query: 15  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
           RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV+V+KGE++IPGLTDTT+PR
Sbjct: 72  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPR 131

Query: 75  RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
           RLGPKRAS+IRKLFNLSKEDDVRQYV+++ L     KEGKK      KAPKIQRL+TP  
Sbjct: 132 RLGPKRASRIRKLFNLSKEDDVRQYVVRKPL----NKEGKK---PRTKAPKIQRLVTPRV 184

Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKE-KKKAKEDERKRRRSSSLRLSTASS 193
           LQ KR  +ALKK+R  K KE+AAEYAKLLA R+KE K+K +E   KRRR SSLR ST+ S
Sbjct: 185 LQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKS 244

Query: 194 EPAAK 198
           E + K
Sbjct: 245 ESSQK 249

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Rattus norvegicus (taxid: 10116)

>sp|P62754|RS6_MOUSE 40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1

 Score =  240 bits (612), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 134/185 (72%), Positives = 153/185 (82%), Gaps = 8/185 (4%)

Query: 15  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
           RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV+V+KGE++IPGLTDTT+PR
Sbjct: 72  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPR 131

Query: 75  RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
           RLGPKRAS+IRKLFNLSKEDDVRQYV+++ L     KEGKK      KAPKIQRL+TP  
Sbjct: 132 RLGPKRASRIRKLFNLSKEDDVRQYVVRKPL----NKEGKK---PRTKAPKIQRLVTPRV 184

Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKE-KKKAKEDERKRRRSSSLRLSTASS 193
           LQ KR  +ALKK+R  K KE+AAEYAKLLA R+KE K+K +E   KRRR SSLR ST+ S
Sbjct: 185 LQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKS 244

Query: 194 EPAAK 198
           E + K
Sbjct: 245 ESSQK 249

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Mus musculus (taxid: 10090)

>sp|Q4R4K6|RS6_MACFA 40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1

 Score =  240 bits (612), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 134/185 (72%), Positives = 153/185 (82%), Gaps = 8/185 (4%)

Query: 15  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
           RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV+V+KGE++IPGLTDTT+PR
Sbjct: 72  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPR 131

Query: 75  RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
           RLGPKRAS+IRKLFNLSKEDDVRQYV+++ L     KEGKK      KAPKIQRL+TP  
Sbjct: 132 RLGPKRASRIRKLFNLSKEDDVRQYVVRKPL----NKEGKK---PRTKAPKIQRLVTPRV 184

Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKE-KKKAKEDERKRRRSSSLRLSTASS 193
           LQ KR  +ALKK+R  K KE+AAEYAKLLA R+KE K+K +E   KRRR SSLR ST+ S
Sbjct: 185 LQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKS 244

Query: 194 EPAAK 198
           E + K
Sbjct: 245 ESSQK 249

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Macaca fascicularis (taxid: 9541)

>sp|P62753|RS6_HUMAN 40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1

 Score =  240 bits (612), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 134/185 (72%), Positives = 153/185 (82%), Gaps = 8/185 (4%)

Query: 15  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
           RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV+V+KGE++IPGLTDTT+PR
Sbjct: 72  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPR 131

Query: 75  RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
           RLGPKRAS+IRKLFNLSKEDDVRQYV+++ L     KEGKK      KAPKIQRL+TP  
Sbjct: 132 RLGPKRASRIRKLFNLSKEDDVRQYVVRKPL----NKEGKK---PRTKAPKIQRLVTPRV 184

Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKE-KKKAKEDERKRRRSSSLRLSTASS 193
           LQ KR  +ALKK+R  K KE+AAEYAKLLA R+KE K+K +E   KRRR SSLR ST+ S
Sbjct: 185 LQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKS 244

Query: 194 EPAAK 198
           E + K
Sbjct: 245 ESSQK 249

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Homo sapiens (taxid: 9606)

>sp|P47838|RS6_CHICK 40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1

 Score =  239 bits (610), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 133/185 (71%), Positives = 153/185 (82%), Gaps = 8/185 (4%)

Query: 15  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
           RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV+V+KGE++IPGLTDTT+PR
Sbjct: 72  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPR 131

Query: 75  RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
           RLGPKRAS+IRKLFNLSKEDDVRQYV+++ L     KEGKK      KAPKIQRL+TP  
Sbjct: 132 RLGPKRASRIRKLFNLSKEDDVRQYVVRKPL----NKEGKK---PRTKAPKIQRLVTPRV 184

Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKE-KKKAKEDERKRRRSSSLRLSTASS 193
           LQ KR  +ALKK+R  K KE+AA+YAKLLA R+KE K+K +E   KRRR SSLR ST+ S
Sbjct: 185 LQHKRRRIALKKQRTQKNKEEAADYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKS 244

Query: 194 EPAAK 198
           E + K
Sbjct: 245 ESSQK 249

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Gallus gallus (taxid: 9031)

>sp|P39017|RS6_XENLA 40S ribosomal protein S6 OS=Xenopus laevis GN=rps6 PE=2 SV=1

 Score =  239 bits (610), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 134/185 (72%), Positives = 152/185 (82%), Gaps = 8/185 (4%)

Query: 15  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
           RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV+VRKGE++IPGLTD T+PR
Sbjct: 72  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVRKGEKDIPGLTDNTVPR 131

Query: 75  RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
           RLGPKRAS+IRKLFNLSKEDDVRQYV+++ L    AKEGKK      KAPKIQRL+TP  
Sbjct: 132 RLGPKRASRIRKLFNLSKEDDVRQYVVRKPL----AKEGKK---PRTKAPKIQRLVTPRV 184

Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKE-KKKAKEDERKRRRSSSLRLSTASS 193
           LQ KR  +ALKK+R  K KE+A+EYAKLLA R KE K+K +E   KRRR SSLR ST+ S
Sbjct: 185 LQHKRRRIALKKQRTQKNKEEASEYAKLLAKRSKEAKEKRQEQIAKRRRLSSLRASTSKS 244

Query: 194 EPAAK 198
           E + K
Sbjct: 245 ESSQK 249

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Xenopus laevis (taxid: 8355)

>sp|Q94624|RS6_MANSE 40S ribosomal protein S6 OS=Manduca sexta GN=RpS6 PE=2 SV=1

 Score =  239 bits (610), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 135/187 (72%), Positives = 157/187 (83%), Gaps = 3/187 (1%)

Query: 13  DRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTI 72
           + RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+NLSVLALV+VRKGEQEIPGLTD  +
Sbjct: 70  NSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGEQEIPGLTDGNV 129

Query: 73  PRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITP 132
           PRRLGPKRASKIRKLFNLSKEDDVR+YV+K  L   PAKEGK+  +  YKAPKIQRL+TP
Sbjct: 130 PRRLGPKRASKIRKLFNLSKEDDVRRYVVKALL---PAKEGKENAKPRYKAPKIQRLVTP 186

Query: 133 VTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTAS 192
           V LQR+RH LALKK+R  KRK   A+YAKLLA R KE K  +++E KRRRS+S+R S +S
Sbjct: 187 VVLQRRRHRLALKKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEIKRRRSASMRDSKSS 246

Query: 193 SEPAAKK 199
           ++ A +K
Sbjct: 247 NQSAPQK 253

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Manduca sexta (taxid: 7130)

>sp|Q5E995|RS6_BOVIN 40S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=2 SV=1

 Score =  239 bits (609), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 133/185 (71%), Positives = 153/185 (82%), Gaps = 8/185 (4%)

Query: 15  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
           RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV+V+KGE++IPGLTDTT+PR
Sbjct: 72  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPR 131

Query: 75  RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
           RLGPKRAS+IRKLFNLSKEDDVRQYV+++ L     K+GKK      KAPKIQRL+TP  
Sbjct: 132 RLGPKRASRIRKLFNLSKEDDVRQYVVRKPL----NKDGKK---PRTKAPKIQRLVTPRV 184

Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKE-KKKAKEDERKRRRSSSLRLSTASS 193
           LQ KR  +ALKK+R  K KE+AAEYAKLLA R+KE K+K +E   KRRR SSLR ST+ S
Sbjct: 185 LQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKS 244

Query: 194 EPAAK 198
           E + K
Sbjct: 245 ESSQK 249

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Bos taurus (taxid: 9913)

>sp|O01727|RS6_BRAFL 40S ribosomal protein S6 OS=Branchiostoma floridae GN=RPS6 PE=3 SV=1

 Score =  235 bits (600), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 125/177 (70%), Positives = 145/177 (81%), Gaps = 6/177 (3%)

Query: 15  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
           RVRLLL KGHSCYRPRRTGERKRKSVRGCIVDSNLSVL LV+++KGEQ+IPGLTDTTIPR
Sbjct: 72  RVRLLLGKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLNLVILKKGEQDIPGLTDTTIPR 131

Query: 75  RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
           RLGPKRA +IRKLFNL+KEDDVRQYV++R   P P KEGKK+    +K PKIQRLITP  
Sbjct: 132 RLGPKRAGRIRKLFNLNKEDDVRQYVVRR---PLPQKEGKKQK---FKTPKIQRLITPQR 185

Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTA 191
           LQRKRH+ A+K+RR  K++E+ A YAKLLA R KE+++A    R   R SSLR S +
Sbjct: 186 LQRKRHMRAVKRRRYAKQREEEATYAKLLAKRKKEEREAHAKRRSSARESSLRESKS 242

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Branchiostoma floridae (taxid: 7739)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
307168090	219	40S ribosomal protein S6 [Camponotus flo	0.747	0.799	0.763	3e-68
332022854	251	40S ribosomal protein S6 [Acromyrmex ech	0.760	0.709	0.748	5e-68
322800518	265	hypothetical protein SINV_16043 [Solenop	0.747	0.660	0.758	1e-67
156541730	251	PREDICTED: 40S ribosomal protein S6-like	0.739	0.689	0.755	4e-67
383849256	251	PREDICTED: 40S ribosomal protein S6-like	0.747	0.697	0.747	8e-67
307203007	251	40S ribosomal protein S6 [Harpegnathos s	0.747	0.697	0.752	6e-66
288869508	248	ribosomal protein S6 [Tribolium castaneu	0.764	0.721	0.784	6e-66
307095100	247	putative 40S ribosomal protein S6 [Triat	0.747	0.708	0.761	4e-65
70909493	233	ribosomal protein S6e [Carabus granulatu	0.752	0.755	0.785	4e-65
263173183	211	putative 40S ribosomal protein S6 [Cimex	0.769	0.853	0.740	4e-65

>gi|307168090|gb|EFN61388.1| 40S ribosomal protein S6 [Camponotus floridanus]

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 139/182 (76%), Positives = 157/182 (86%), Gaps = 7/182 (3%)

Query: 15  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
           RVRLLLSKGHSCYRPRR GERKRKSVRGCIVDSNLSVLALV+VRKG+QEIPGLTD  +PR
Sbjct: 41  RVRLLLSKGHSCYRPRRDGERKRKSVRGCIVDSNLSVLALVIVRKGKQEIPGLTDMNVPR 100

Query: 75  RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
           RLGPKRASKIRKLFNLSK+DDVRQ+V+KR +     KEGKK   + +KAPKIQRLITP+ 
Sbjct: 101 RLGPKRASKIRKLFNLSKKDDVRQFVVKRPV----QKEGKK---ERFKAPKIQRLITPIV 153

Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSE 194
           LQRKRH LALKK+RCL RKEQAAEYAKLLA R KE K  +++E KRRRS+S+R S +SS+
Sbjct: 154 LQRKRHRLALKKKRCLARKEQAAEYAKLLAQRQKEAKNRRQEELKRRRSASMRDSKSSSQ 213

Query: 195 PA 196
            A
Sbjct: 214 SA 215

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022854|gb|EGI63127.1| 40S ribosomal protein S6 [Acromyrmex echinatior]

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 140/187 (74%), Positives = 162/187 (86%), Gaps = 9/187 (4%)

Query: 15  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
           RVRLLLSKGHSCYRPRR GERKRKSVRGCIVDSNLSVLALV++RKG+QEIPGLTD  +PR
Sbjct: 72  RVRLLLSKGHSCYRPRRDGERKRKSVRGCIVDSNLSVLALVIIRKGKQEIPGLTDMNVPR 131

Query: 75  RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
           RLGPKRASKIRKLFNLSK+DDVRQ+V+KR +     KEGKK   + +KAPKIQRLITP++
Sbjct: 132 RLGPKRASKIRKLFNLSKKDDVRQFVVKRPV----QKEGKK---ERFKAPKIQRLITPIS 184

Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSE 194
           LQRKRH LALKK+RCL RKEQAAEYAKLLA R KE K  +++E KRRRS+SLR S +S++
Sbjct: 185 LQRKRHRLALKKKRCLARKEQAAEYAKLLAQRQKEAKNRRQEELKRRRSASLRESKSSTQ 244

Query: 195 --PAAKK 199
             PAA++
Sbjct: 245 TAPAAQQ 251

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800518|gb|EFZ21522.1| hypothetical protein SINV_16043 [Solenopsis invicta]

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 138/182 (75%), Positives = 157/182 (86%), Gaps = 7/182 (3%)

Query: 15  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
           RVRLLLSKGHSCYRPRR GERKRKSVRGCIVDSNLSVLALV++RKG+QEIPGLTD  +PR
Sbjct: 85  RVRLLLSKGHSCYRPRRDGERKRKSVRGCIVDSNLSVLALVIIRKGKQEIPGLTDMNVPR 144

Query: 75  RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
           RLGPKRASKIRKLFNLSK+DDVRQ+V+KR +     KEGKK   + +KAPKIQRLITP+ 
Sbjct: 145 RLGPKRASKIRKLFNLSKKDDVRQFVVKRPVQ----KEGKK---ERFKAPKIQRLITPIV 197

Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSE 194
           LQRKRH LALKK+RCL RKEQAAEYAKLLA R KE K  +++E KRRRS+SLR S +S++
Sbjct: 198 LQRKRHRLALKKKRCLARKEQAAEYAKLLAQRQKEAKNRRQEELKRRRSASLRESKSSTQ 257

Query: 195 PA 196
            A
Sbjct: 258 TA 259

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156541730|ref|XP_001599702.1| PREDICTED: 40S ribosomal protein S6-like [Nasonia vitripennis]

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 136/180 (75%), Positives = 158/180 (87%), Gaps = 7/180 (3%)

Query: 15  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
           RVRLLLSKGHSCYRPRR GERKRKSVRGCIVD+NLSVLALV+++KGEQEIPGLTDT IPR
Sbjct: 72  RVRLLLSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIIKKGEQEIPGLTDTNIPR 131

Query: 75  RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
           RLGPKRASKIRKLFNL+K+DDVR++V+KR +     KEGKK   + +KAPKIQRLITP+T
Sbjct: 132 RLGPKRASKIRKLFNLTKQDDVRRFVVKRPIQ----KEGKK---ERFKAPKIQRLITPLT 184

Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSE 194
           LQRKRH +ALKKRRCL RKEQAAEYAKLLA R KE K  +++E KRRRS+S+R S +S++
Sbjct: 185 LQRKRHRVALKKRRCLARKEQAAEYAKLLAQRQKEAKARRQEEIKRRRSASIRDSKSSNQ 244

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849256|ref|XP_003700261.1| PREDICTED: 40S ribosomal protein S6-like [Megachile rotundata]

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 136/182 (74%), Positives = 158/182 (86%), Gaps = 7/182 (3%)

Query: 15  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
           RVRLLLSKGHSCYRPRR GERKRKSVRGCIVDSNLSVLALV+V+KGE+EIPGLTDT +PR
Sbjct: 72  RVRLLLSKGHSCYRPRRDGERKRKSVRGCIVDSNLSVLALVIVKKGEKEIPGLTDTNVPR 131

Query: 75  RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
           RLGPKRAS+IRKLFNLSKEDDVRQ+V+KR +     KEGKK   + +KAPKIQRLITP+T
Sbjct: 132 RLGPKRASRIRKLFNLSKEDDVRQFVVKRPV----QKEGKK---ERFKAPKIQRLITPLT 184

Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSE 194
           LQRKRH +ALK+RR L RK+QAA+YAKLLA R KE K  +++E KRRRS+S+R S +SS+
Sbjct: 185 LQRKRHRVALKRRRSLARKQQAADYAKLLAQRQKEAKNRRQEELKRRRSASMRDSKSSSQ 244

Query: 195 PA 196
            A
Sbjct: 245 SA 246

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203007|gb|EFN82223.1| 40S ribosomal protein S6 [Harpegnathos saltator]

 Score =  256 bits (654), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 137/182 (75%), Positives = 155/182 (85%), Gaps = 7/182 (3%)

Query: 15  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
           RVRLLLSKGHSCYRPRR GERKRKSVRGCIVDSNLSVLALV+VRKG+QEIP LTD  +PR
Sbjct: 72  RVRLLLSKGHSCYRPRRDGERKRKSVRGCIVDSNLSVLALVIVRKGKQEIPELTDKNVPR 131

Query: 75  RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
           RLGPKRASKIRKLFNLSK+DDVRQ+V+KR +     KEGKK   +  KAPKIQRLITP+ 
Sbjct: 132 RLGPKRASKIRKLFNLSKKDDVRQFVVKRPV----QKEGKK---ERLKAPKIQRLITPIV 184

Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSE 194
           LQRKRH LALKK+RCL RKEQAAEYAKLLA R KE K  +++E KRRRS+S+R S +S++
Sbjct: 185 LQRKRHRLALKKKRCLARKEQAAEYAKLLAQRQKEAKNRRQEELKRRRSASMRDSKSSNQ 244

Query: 195 PA 196
            A
Sbjct: 245 SA 246

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|288869508|ref|NP_001165861.1| ribosomal protein S6 [Tribolium castaneum] gi|270014845|gb|EFA11293.1| hypothetical protein TcasGA2_TC010830 [Tribolium castaneum]

 Score =  256 bits (653), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 146/186 (78%), Positives = 157/186 (84%), Gaps = 7/186 (3%)

Query: 13  DRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTI 72
           + RVRLLLSKGHSCYRPRR GERKRKSVRGCIVD NLSVLALV+VRKGEQEIPGLTDTT+
Sbjct: 70  NSRVRLLLSKGHSCYRPRRDGERKRKSVRGCIVDGNLSVLALVIVRKGEQEIPGLTDTTV 129

Query: 73  PRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITP 132
           PRRLGPKRAS IRKLFNLSKEDDVRQYV+KR   P P KEGKK   + +KAPKIQRLITP
Sbjct: 130 PRRLGPKRASNIRKLFNLSKEDDVRQYVVKR---PLPQKEGKK---QRFKAPKIQRLITP 183

Query: 133 VTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTAS 192
           V LQRKRH LALKK+RCL+RKEQ+  YAKLLA R KE K  KE E KRRRS+SLR S +S
Sbjct: 184 VVLQRKRHRLALKKKRCLRRKEQSDNYAKLLAQRKKESKAKKE-EMKRRRSASLRDSKSS 242

Query: 193 SEPAAK 198
           S  A K
Sbjct: 243 SHSAQK 248

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307095100|gb|ADN29856.1| putative 40S ribosomal protein S6 [Triatoma matogrossensis]

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 137/180 (76%), Positives = 154/180 (85%), Gaps = 5/180 (2%)

Query: 15  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
           RVRLLLSKGHSCYRPRR GERKRKSVRGCIVD+NLSVLALV+V+KGEQ+IPGLTD +IPR
Sbjct: 72  RVRLLLSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVKKGEQDIPGLTDHSIPR 131

Query: 75  RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
           RLGPKRASKIRKLFNLSKEDDVRQYVIKR   P P KEG+ K R  +KAPKIQRLITP+ 
Sbjct: 132 RLGPKRASKIRKLFNLSKEDDVRQYVIKR---PLPLKEGQTKQR--FKAPKIQRLITPIV 186

Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSE 194
           LQRKR  LALKK+R  +RKEQ  EYAKLLA R KE K  +++E KRRRS+SLR S +S++
Sbjct: 187 LQRKRRRLALKKKRTERRKEQEREYAKLLAQRQKEAKARRQEEIKRRRSASLRDSKSSAQ 246

Source: Triatoma matogrossensis

Species: Triatoma matogrossensis

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909493|emb|CAJ17171.1| ribosomal protein S6e [Carabus granulatus]

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 143/182 (78%), Positives = 159/182 (87%), Gaps = 6/182 (3%)

Query: 15  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
           RVRLLLSKGHSCYRPRR GERKRKSVRGCIVDS LSVL+LVVVRKGEQEIPGLTDTTIPR
Sbjct: 55  RVRLLLSKGHSCYRPRRDGERKRKSVRGCIVDSYLSVLSLVVVRKGEQEIPGLTDTTIPR 114

Query: 75  RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
           RLGPKRAS+IRKLFNLSKEDDVRQYV+KR   P P KEG KK+R   KAPKIQRLITP+T
Sbjct: 115 RLGPKRASRIRKLFNLSKEDDVRQYVVKR---PLPQKEG-KKLRT--KAPKIQRLITPLT 168

Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSE 194
           LQRKRH LALKK+RCL+RKEQA  YAKLLA R KE K  +++E +RRRS+S+R S +S++
Sbjct: 169 LQRKRHRLALKKKRCLRRKEQADNYAKLLAQRKKESKARRQEEIQRRRSASMRDSKSSTQ 228

Query: 195 PA 196
            A
Sbjct: 229 SA 230

Source: Carabus granulatus

Species: Carabus granulatus

Genus: Carabus

Family: Carabidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|263173183|gb|ACY69876.1| putative 40S ribosomal protein S6 [Cimex lectularius]

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 137/185 (74%), Positives = 153/185 (82%), Gaps = 5/185 (2%)

Query: 15  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
           RVRLLLSKGHSCYRPRR GERKRKSVRGCIVD+NLSVLALV+V+KGEQ+IPGLTD  +PR
Sbjct: 32  RVRLLLSKGHSCYRPRRQGERKRKSVRGCIVDANLSVLALVIVKKGEQDIPGLTDVHVPR 91

Query: 75  RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
           RLGPKRASKIRKLFNLSKEDDVR YVIKR   P P KEG+ K R   KAPKIQRLITPV 
Sbjct: 92  RLGPKRASKIRKLFNLSKEDDVRHYVIKR---PLPLKEGQTKQR--LKAPKIQRLITPVV 146

Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSSSLRLSTASSE 194
           LQRKRH +ALKKRR  KRKEQ  +YAKLLA R KE K  +++E KRRRS+S+R S +S+ 
Sbjct: 147 LQRKRHRIALKKRRAEKRKEQVRDYAKLLAQRQKEAKARRQEELKRRRSASMRDSKSSAH 206

Query: 195 PAAKK 199
              +K
Sbjct: 207 SGPQK 211

Source: Cimex lectularius

Species: Cimex lectularius

Genus: Cimex

Family: Cimicidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
FB|FBgn0261592	248	RpS6 "Ribosomal protein S6" [D	0.594	0.560	0.675	2.1e-45
UNIPROTKB|Q6P7K2	249	rps6 "40S ribosomal protein S6	0.589	0.554	0.689	4.4e-45
ZFIN|ZDB-GENE-040801-8	249	zgc:92237 "zgc:92237" [Danio r	0.589	0.554	0.696	4.4e-45
UNIPROTKB|E2RP05	249	RPS6 "40S ribosomal protein S6	0.589	0.554	0.689	5.6e-45
UNIPROTKB|A2A3R5	218	RPS6 "40S ribosomal protein S6	0.589	0.633	0.689	5.6e-45
UNIPROTKB|P62753	249	RPS6 "40S ribosomal protein S6	0.589	0.554	0.689	5.6e-45
UNIPROTKB|F2Z5Q6	247	RPS6 "40S ribosomal protein S6	0.589	0.558	0.689	5.6e-45
UNIPROTKB|Q90YR8	249	rps6 "40S ribosomal protein S6	0.589	0.554	0.682	5.6e-45
RGD|3602	249	Rps6 "ribosomal protein S6" [R	0.589	0.554	0.689	5.6e-45
UNIPROTKB|F1NZS7	249	RPS6 "40S ribosomal protein S6	0.589	0.554	0.682	1.2e-44

FB|FBgn0261592 RpS6 "Ribosomal protein S6" [Drosophila melanogaster (taxid:7227)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 98/145 (67%), Positives = 112/145 (77%)

Query:    15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
             RVRLLL KGHSCYRPRRTGERKRKSVRGCIVD+N+SVLALVV++KGE++IPGLTDTTIPR
Sbjct:    72 RVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDANMSVLALVVLKKGEKDIPGLTDTTIPR 131

Query:    75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
             RLGPKRASKIRKL+NLSKEDDVR++V++R   P PAK+ KK   K   APKIQRLITPV 
Sbjct:   132 RLGPKRASKIRKLYNLSKEDDVRRFVVRR---PLPAKDNKKATSK---APKIQRLITPVV 185

Query:   135 XXXXXXXXXXXXXXXXXXXEQAAEY 159
                                E +A+Y
Sbjct:   186 LQRKHRRIALKKKRQIASKEASADY 210

GO:0006412 "translation" evidence=ISS;NAS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA;NAS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IBA;NAS

GO:0005840 "ribosome" evidence=IDA;NAS

GO:0006955 "immune response" evidence=TAS

GO:0005811 "lipid particle" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0051298 "centrosome duplication" evidence=IMP

GO:0006364 "rRNA processing" evidence=IBA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IBA

UNIPROTKB|Q6P7K2 rps6 "40S ribosomal protein S6" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 100/145 (68%), Positives = 112/145 (77%)

Query:    15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
             RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV+VRKGE++IPGLTD T+PR
Sbjct:    72 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVRKGEKDIPGLTDNTVPR 131

Query:    75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
             RLGPKRAS+IRKLFNLSKEDDVRQYV+++ L    AKEGKK  R   KAPKIQRL+TP  
Sbjct:   132 RLGPKRASRIRKLFNLSKEDDVRQYVVRKPL----AKEGKKP-RT--KAPKIQRLVTPRV 184

Query:   135 XXXXXXXXXXXXXXXXXXXEQAAEY 159
                                E+A+EY
Sbjct:   185 LQHKRRRIALKKQRTQKNKEEASEY 209

GO:0006364 "rRNA processing" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

ZFIN|ZDB-GENE-040801-8 zgc:92237 "zgc:92237" [Danio rerio (taxid:7955)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 101/145 (69%), Positives = 111/145 (76%)

Query:    15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
             RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV+VRKGE++IPGLTD+T+PR
Sbjct:    72 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVRKGEKDIPGLTDSTVPR 131

Query:    75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
             RLGPKRAS+IRKLFNLSKEDDVRQYV++R L     KEGKK  R   KAPKIQRL+TP  
Sbjct:   132 RLGPKRASRIRKLFNLSKEDDVRQYVVRRPL----TKEGKKP-RT--KAPKIQRLVTPRV 184

Query:   135 XXXXXXXXXXXXXXXXXXXEQAAEY 159
                                E AAEY
Sbjct:   185 LQHKRRRIALKRQRTLKNKEAAAEY 209

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006364 "rRNA processing" evidence=IBA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|E2RP05 RPS6 "40S ribosomal protein S6" [Canis lupus familiaris (taxid:9615)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 100/145 (68%), Positives = 112/145 (77%)

Query:    15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
             RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV+V+KGE++IPGLTDTT+PR
Sbjct:    72 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPR 131

Query:    75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
             RLGPKRAS+IRKLFNLSKEDDVRQYV+++ L     KEGKK  R   KAPKIQRL+TP  
Sbjct:   132 RLGPKRASRIRKLFNLSKEDDVRQYVVRKPLN----KEGKKP-RT--KAPKIQRLVTPRV 184

Query:   135 XXXXXXXXXXXXXXXXXXXEQAAEY 159
                                E+AAEY
Sbjct:   185 LQHKRRRIALKKQRTKKNKEEAAEY 209

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|A2A3R5 RPS6 "40S ribosomal protein S6" [Homo sapiens (taxid:9606)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 100/145 (68%), Positives = 112/145 (77%)

Query:    15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
             RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV+V+KGE++IPGLTDTT+PR
Sbjct:    41 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPR 100

Query:    75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
             RLGPKRAS+IRKLFNLSKEDDVRQYV+++ L     KEGKK  R   KAPKIQRL+TP  
Sbjct:   101 RLGPKRASRIRKLFNLSKEDDVRQYVVRKPLN----KEGKKP-RT--KAPKIQRLVTPRV 153

Query:   135 XXXXXXXXXXXXXXXXXXXEQAAEY 159
                                E+AAEY
Sbjct:   154 LQHKRRRIALKKQRTKKNKEEAAEY 178

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0000028 "ribosomal small subunit assembly" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|P62753 RPS6 "40S ribosomal protein S6" [Homo sapiens (taxid:9606)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 100/145 (68%), Positives = 112/145 (77%)

Query:    15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
             RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV+V+KGE++IPGLTDTT+PR
Sbjct:    72 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPR 131

Query:    75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
             RLGPKRAS+IRKLFNLSKEDDVRQYV+++ L     KEGKK  R   KAPKIQRL+TP  
Sbjct:   132 RLGPKRASRIRKLFNLSKEDDVRQYVVRKPLN----KEGKKP-RT--KAPKIQRLVTPRV 184

Query:   135 XXXXXXXXXXXXXXXXXXXEQAAEY 159
                                E+AAEY
Sbjct:   185 LQHKRRRIALKKQRTKKNKEEAAEY 209

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0000028 "ribosomal small subunit assembly" evidence=IEA

GO:0006364 "rRNA processing" evidence=IMP

GO:0042274 "ribosomal small subunit biogenesis" evidence=IMP

GO:0043065 "positive regulation of apoptotic process" evidence=IDA

GO:0015935 "small ribosomal subunit" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0042593 "glucose homeostasis" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0022627 "cytosolic small ribosomal subunit" evidence=NAS;IDA

GO:0006412 "translation" evidence=IC;TAS

GO:0031929 "TOR signaling cascade" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F2Z5Q6 RPS6 "40S ribosomal protein S6" [Sus scrofa (taxid:9823)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 100/145 (68%), Positives = 112/145 (77%)

Query:    15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
             RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV+V+KGE++IPGLTDTT+PR
Sbjct:    70 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPR 129

Query:    75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
             RLGPKRAS+IRKLFNLSKEDDVRQYV+++ L     KEGKK  R   KAPKIQRL+TP  
Sbjct:   130 RLGPKRASRIRKLFNLSKEDDVRQYVVRKPLN----KEGKKP-RT--KAPKIQRLVTPRV 182

Query:   135 XXXXXXXXXXXXXXXXXXXEQAAEY 159
                                E+AAEY
Sbjct:   183 LQHKRRRIALKKQRTKKNKEEAAEY 207

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q90YR8 rps6 "40S ribosomal protein S6" [Ictalurus punctatus (taxid:7998)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 99/145 (68%), Positives = 112/145 (77%)

Query:    15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
             RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV++RKGE++IPGLTD+T+PR
Sbjct:    72 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIIRKGEKDIPGLTDSTVPR 131

Query:    75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
             RLGPKRAS+IRKLFNLSKEDDVRQYV++R L     KEGKK  R   KAPKIQRL+TP  
Sbjct:   132 RLGPKRASRIRKLFNLSKEDDVRQYVVRRPL----TKEGKKP-RT--KAPKIQRLVTPRV 184

Query:   135 XXXXXXXXXXXXXXXXXXXEQAAEY 159
                                ++AAEY
Sbjct:   185 LQHKRRRIALKRQRTQKNKDEAAEY 209

GO:0005634 "nucleus" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0042593 "glucose homeostasis" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

RGD|3602 Rps6 "ribosomal protein S6" [Rattus norvegicus (taxid:10116)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 100/145 (68%), Positives = 112/145 (77%)

Query:    15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
             RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV+V+KGE++IPGLTDTT+PR
Sbjct:    72 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPR 131

Query:    75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
             RLGPKRAS+IRKLFNLSKEDDVRQYV+++ L     KEGKK  R   KAPKIQRL+TP  
Sbjct:   132 RLGPKRASRIRKLFNLSKEDDVRQYVVRKPLN----KEGKKP-RT--KAPKIQRLVTPRV 184

Query:   135 XXXXXXXXXXXXXXXXXXXEQAAEY 159
                                E+AAEY
Sbjct:   185 LQHKRRRIALKKQRTKKNKEEAAEY 209

GO:0000028 "ribosomal small subunit assembly" evidence=IMP

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=ISO

GO:0001890 "placenta development" evidence=ISO

GO:0002309 "T cell proliferation involved in immune response" evidence=ISO

GO:0003735 "structural constituent of ribosome" evidence=IMP;TAS

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005840 "ribosome" evidence=ISO;TAS

GO:0005844 "polysome" evidence=ISO

GO:0006364 "rRNA processing" evidence=ISO;IBA

GO:0006412 "translation" evidence=IEA

GO:0006924 "activation-induced cell death of T cells" evidence=ISO

GO:0007067 "mitosis" evidence=ISO

GO:0007093 "mitotic cell cycle checkpoint" evidence=ISO

GO:0007369 "gastrulation" evidence=ISO

GO:0015935 "small ribosomal subunit" evidence=ISO

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0022605 "oogenesis stage" evidence=ISO

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO;IDA

GO:0030529 "ribonucleoprotein complex" evidence=ISO

GO:0031929 "TOR signaling cascade" evidence=IEA;ISO

GO:0033077 "T cell differentiation in thymus" evidence=ISO

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISO

GO:0042593 "glucose homeostasis" evidence=ISS

GO:0043065 "positive regulation of apoptotic process" evidence=IEA;ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0048821 "erythrocyte development" evidence=ISO

UNIPROTKB|F1NZS7 RPS6 "40S ribosomal protein S6" [Gallus gallus (taxid:9031)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 99/145 (68%), Positives = 112/145 (77%)

Query:    15 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
             RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVD+NLSVL LV+V+KGE++IPGLTDTT+PR
Sbjct:    72 RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPR 131

Query:    75 RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
             RLGPKRAS+IRKLFNLSKEDDVRQYV+++ L     KEGKK  R   KAPKIQRL+TP  
Sbjct:   132 RLGPKRASRIRKLFNLSKEDDVRQYVVRKPLN----KEGKKP-RT--KAPKIQRLVTPRV 184

Query:   135 XXXXXXXXXXXXXXXXXXXEQAAEY 159
                                E+AA+Y
Sbjct:   185 LQHKRRRIALKKQRTQKNKEEAADY 209

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0031929 "TOR signaling cascade" evidence=IEA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P39017	RS6_XENLA	No assigned EC number	0.7243	0.7564	0.7108	N/A	N/A
P47838	RS6_CHICK	No assigned EC number	0.7189	0.7564	0.7108	yes	N/A
Q94624	RS6_MANSE	No assigned EC number	0.7219	0.7863	0.7272	N/A	N/A
P05752	RS6A_SCHPO	No assigned EC number	0.6531	0.7136	0.6987	yes	N/A
Q5E995	RS6_BOVIN	No assigned EC number	0.7189	0.7564	0.7108	no	N/A
Q54UU3	RS6_DICDI	No assigned EC number	0.5443	0.6495	0.6440	yes	N/A
Q95V32	RS6_SPOFR	No assigned EC number	0.7297	0.7777	0.7193	N/A	N/A
P62754	RS6_MOUSE	No assigned EC number	0.7243	0.7564	0.7108	yes	N/A
P62755	RS6_RAT	No assigned EC number	0.7243	0.7564	0.7108	yes	N/A
P62753	RS6_HUMAN	No assigned EC number	0.7243	0.7564	0.7108	yes	N/A
P51430	RS62_ARATH	No assigned EC number	0.5721	0.7393	0.6947	yes	N/A
Q90YR8	RS6_ICTPU	No assigned EC number	0.7298	0.7094	0.6666	N/A	N/A
Q9NE83	RS6_LEIMA	No assigned EC number	0.5166	0.4743	0.4457	yes	N/A
Q9NEN6	RS6_CAEEL	No assigned EC number	0.5864	0.6452	0.6138	yes	N/A
Q6FJH3	RS6_CANGA	No assigned EC number	0.6081	0.6880	0.6822	yes	N/A
O01727	RS6_BRAFL	No assigned EC number	0.7062	0.7307	0.7008	yes	N/A
Q4R4K6	RS6_MACFA	No assigned EC number	0.7243	0.7564	0.7108	N/A	N/A
Q74ZK3	RS6_ASHGO	No assigned EC number	0.5964	0.6880	0.6822	yes	N/A
Q6C169	RS6_YARLI	No assigned EC number	0.5921	0.7307	0.7066	yes	N/A
Q6BXH8	RS6_DEBHA	No assigned EC number	0.6127	0.7008	0.6949	yes	N/A
Q2PQM1	RS6_GLOMM	No assigned EC number	0.7398	0.7094	0.6693	N/A	N/A
O48549	RS61_ARATH	No assigned EC number	0.5614	0.7393	0.692	yes	N/A
P0CX37	RS6A_YEAST	No assigned EC number	0.6257	0.6880	0.6822	yes	N/A
Q6CM04	RS6_KLULA	No assigned EC number	0.5941	0.6923	0.6864	yes	N/A
O44012	RS6_LEIIN	No assigned EC number	0.5166	0.4743	0.4457	yes	N/A
P29327	RS6_DROME	No assigned EC number	0.7283	0.7094	0.6693	no	N/A
Q9C0Z7	RS6B_SCHPO	No assigned EC number	0.6647	0.7051	0.6903	yes	N/A
P0CX38	RS6B_YEAST	No assigned EC number	0.6257	0.6880	0.6822	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	234
PTZ00028	218	PTZ00028, PTZ00028, 40S ribosomal protein S6e; Pro	1e-58
pfam01092	127	pfam01092, Ribosomal_S6e, Ribosomal protein S6e	4e-28
COG2125	120	COG2125, RPS6A, Ribosomal protein S6E (S10) [Trans	1e-14
PRK04290	115	PRK04290, PRK04290, 30S ribosomal protein S6e; Val	6e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	6e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.001
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.001
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.002

>gnl|CDD|185404 PTZ00028, PTZ00028, 40S ribosomal protein S6e; Provisional

 Score =  184 bits (468), Expect = 1e-58
 Identities = 99/158 (62%), Positives = 115/158 (72%), Gaps = 11/158 (6%)

Query: 15  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
           RVRLL  KG  CYRPRRTGE KRKSVRGCIV  +LSVL LV+V+KG QEIPGLTD   PR
Sbjct: 72  RVRLLFRKGMKCYRPRRTGEMKRKSVRGCIVGHDLSVLNLVLVKKGPQEIPGLTDGERPR 131

Query: 75  RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
           RLGPKRASKIRKLFNLSK DDVR++V++R +      EGK K     KAPKIQRL+TP  
Sbjct: 132 RLGPKRASKIRKLFNLSKSDDVRKFVVRRKI------EGKNKT----KAPKIQRLVTPQR 181

Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKK 172
           LQRKR      K++ L+ +E+A EY KLL    K +K+
Sbjct: 182 LQRKRRYRKTLKKKVLQSREEAKEYQKLLE-EYKNEKR 218

Length = 218

>gnl|CDD|110116 pfam01092, Ribosomal_S6e, Ribosomal protein S6e

 Score =  103 bits (258), Expect = 4e-28
 Identities = 47/57 (82%), Positives = 52/57 (91%)

Query: 14  RRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDT 70
            RVRLLLSKGHSCYRPRR GERKRKSVRGCIVD +LSVL LV+V+KGE++IPGLTD 
Sbjct: 71  TRVRLLLSKGHSCYRPRRDGERKRKSVRGCIVDPDLSVLNLVIVKKGEKDIPGLTDD 127

Length = 127

>gnl|CDD|225036 COG2125, RPS6A, Ribosomal protein S6E (S10) [Translation, ribosomal structure and biogenesis]

 Score = 67.7 bits (166), Expect = 1e-14
 Identities = 28/50 (56%), Positives = 36/50 (72%), Gaps = 1/50 (2%)

Query: 14  RRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQE 63
           RRVR+LLS G   YRPRR GERKRK+VRG I+  ++  + LV+V  GE+ 
Sbjct: 72  RRVRILLS-GGPGYRPRRKGERKRKTVRGNIISPDIVQINLVIVEYGEKP 120

Length = 120

>gnl|CDD|235271 PRK04290, PRK04290, 30S ribosomal protein S6e; Validated

 Score = 43.7 bits (104), Expect = 6e-06
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 14  RRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVR 58
            R R+LLS G   +RP+  GER+RK+VRG  +  ++  +   VV 
Sbjct: 71  VRRRILLSGGPG-FRPKEKGERRRKTVRGNTISDDIVQINAKVVE 114

Length = 115

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 21/39 (53%), Positives = 23/39 (58%)

Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAP 227
           S  ++ PAAK PA  AP   AA APAA  K A  AAAA 
Sbjct: 56  SAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAA 94

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 16/46 (34%), Positives = 17/46 (36%)

Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
              +   AA   AP  P   AA A A  A  A  AAAAP       
Sbjct: 70  PAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 16/43 (37%), Positives = 18/43 (41%)

Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPT 231
           + A + PA   PA AAP     PA AA A  A  A  A     
Sbjct: 64  AKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAA 106

Length = 1228

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 17/46 (36%), Positives = 20/46 (43%)

Query: 189 STASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAAPVGPTNLP 234
           + A++   A     AA     APAPAA A  A  A AA   P   P
Sbjct: 198 APAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAP 243

Length = 547

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	234
KOG1646|consensus	237		100.0
PTZ00028	218	40S ribosomal protein S6e; Provisional	100.0
PF01092	127	Ribosomal_S6e: Ribosomal protein S6e; InterPro: IP	99.94
PRK04290	115	30S ribosomal protein S6e; Validated	99.85
COG2125	120	RPS6A Ribosomal protein S6E (S10) [Translation, ri	99.83

>KOG1646|consensus

Probab=100.00  E-value=7.2e-79  Score=531.92  Aligned_cols=176  Identities=73%  Similarity=1.036  Sum_probs=169.8

Q ss_pred             ecccccCCCCCeEEEeecCCCccccCCCCCccceeeecceeecCCcceEEEEEEeccCCCCCCCCCCCCCCccCCCchhh
Q psy17953          4 ITKWWLCPKDRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPRRLGPKRASK   83 (234)
Q Consensus         4 ~~~~~gVlt~gRVrLLLskG~scYRPrr~GERKRKSVRGciV~~disvLNlvIVKkGek~IpgLTD~tvPrrLGPKRAsk   83 (234)
                      +-|+|||||++||+|||++|||||||||+|||+|||||||||++|||+|||+||++||+|||||||+++|++|||||||+
T Consensus        61 FPMkqGvLt~~RvrlLL~kg~scyRpRr~GeRkRKSVRGcIV~anlsvLnLvIvKkGekdipGLTdt~~P~rlGPkRask  140 (237)
T KOG1646|consen   61 FPMKQGVLTPGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVSANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASK  140 (237)
T ss_pred             CcccccccccchhhhhhhcCccccccccccccccccccceeecccceeeeeeEeccCcccCCCccccccccccCchhhHH
Confidence            45999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhCCCCcCccccceecccCCCCCCCCCCccccccccCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17953         84 IRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVTLQRKRHLLALKKRRCLKRKEQAAEYAKLL  163 (234)
Q Consensus        84 IRKLFnLSKeDDVrkyVirr~l~~~~~kegkK~~~~~tKaPKIQRLVTP~~LQrKr~~~alKk~r~~k~keeaaeYakLL  163 (234)
                      ||||||||+||||++||||++++    ++|++++   ||||||||||||.+||||++++|+|++++.+++|+|+||++||
T Consensus       141 IrKlfnLskEddvr~~vir~~~~----~~~~k~~---tkaPKIqrlvtp~~lqrk~~~~alkk~~~~k~re~aaey~kLL  213 (237)
T KOG1646|consen  141 IRKLFNLSKEDDVRQYVIRRPLT----KEGKKPK---TKAPKIQRLVTPRRLQRKRQRIALKKKQIKKNREEAAEYAKLL  213 (237)
T ss_pred             HHHHhCCCccccceeeEEecccc----ccCCCcc---ccCcchhhccchHHHHhhhhHHHHHHHHHHHhHHHHHHHHHHH
Confidence            99999999999999999999997    8999999   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhHHHHHhhhhhhhc
Q psy17953        164 AIRIKEKKKAKEDERKRRRSSSLR  187 (234)
Q Consensus       164 akr~ke~k~~~~~~~krrr~ss~r  187 (234)
                      ++|++|+++++.+ ++++++||++
T Consensus       214 akr~kE~k~kr~e-~~~rr~ss~~  236 (237)
T KOG1646|consen  214 AKRLKEAKEKRFE-VKRRRASSLR  236 (237)
T ss_pred             HHHHHHHHHHHHH-HHHHhhhhhc
Confidence            9999999999865 6677777765

>PTZ00028 40S ribosomal protein S6e; Provisional

Probab=100.00  E-value=4.8e-70  Score=477.37  Aligned_cols=157  Identities=62%  Similarity=0.919  Sum_probs=151.2

Q ss_pred             ecccccCCCCCeEEEeecCCCccccCCCCCccceeeecceeecCCcceEEEEEEeccCCCCCCCCCCCCCCccCCCchhh
Q psy17953          4 ITKWWLCPKDRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPRRLGPKRASK   83 (234)
Q Consensus         4 ~~~~~gVlt~gRVrLLLskG~scYRPrr~GERKRKSVRGciV~~disvLNlvIVKkGek~IpgLTD~tvPrrLGPKRAsk   83 (234)
                      +-|+|||+|++||+|||++||+||||+++|||+||||||||||+||||||++||++||++||||||+++|++|||||||+
T Consensus        61 fPMkqgV~~~~RvrlLL~kG~~gyrprr~GeRkRKsVRGciVs~dis~lNlvIvk~Ge~~i~gLtd~~~prrlgPkrask  140 (218)
T PTZ00028         61 FPMMQGVLTNNRVRLLFRKGMKCYRPRRTGEMKRKSVRGCIVGHDLSVLNLVLVKKGPQEIPGLTDGERPRRLGPKRASK  140 (218)
T ss_pred             cccCCCccCCceEEEEecCCCCCCCcCCCCcceeeeeeeeeecCCceEEEEEEEecCCccChhhccCcCCccCCCcchhh
Confidence            35999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhCCCCcCccccceecccCCCCCCCCCCccccccccCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17953         84 IRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVTLQRKRHLLALKKRRCLKRKEQAAEYAKLL  163 (234)
Q Consensus        84 IRKLFnLSKeDDVrkyVirr~l~~~~~kegkK~~~~~tKaPKIQRLVTP~~LQrKr~~~alKk~r~~k~keeaaeYakLL  163 (234)
                      |||||||||+|||++|||+|++.      |++ .   +|||||||||||.+||||++++++|+++.++++++++||++||
T Consensus       141 irklfnlsk~ddvrk~virr~~~------gkk-~---~KapKIQRLiTp~~lqrKr~~~~~k~~r~~~~k~~~~ey~kll  210 (218)
T PTZ00028        141 IRKLFNLSKSDDVRKFVVRRKIE------GKN-K---TKAPKIQRLVTPQRLQRKRRYRKTLKKKVLQSREEAKEYQKLL  210 (218)
T ss_pred             hHHHhCCCccCChhhceeccccC------CCC-C---CcCCceeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999983      544 3   8999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy17953        164 AIRIKEK  170 (234)
Q Consensus       164 akr~ke~  170 (234)
                      ++|++|.
T Consensus       211 ~~~~~e~  217 (218)
T PTZ00028        211 EEYKNEK  217 (218)
T ss_pred             HHHHhhc
Confidence            9999874

>PF01092 Ribosomal_S6e: Ribosomal protein S6e; InterPro: IPR001377 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.94  E-value=2.8e-28  Score=199.54  Aligned_cols=67  Identities=57%  Similarity=0.844  Sum_probs=48.2

Q ss_pred             ecccccCCCCCeEEEeecCCCccccCCCCCccceeeecceeecCCcceEEEEEEeccCCCCCCCCCC
Q psy17953          4 ITKWWLCPKDRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDT   70 (234)
Q Consensus         4 ~~~~~gVlt~gRVrLLLskG~scYRPrr~GERKRKSVRGciV~~disvLNlvIVKkGek~IpgLTD~   70 (234)
                      +.|++||++++||++||++||+||||+++|||||||||||||++||+|||++||++||++||||||+
T Consensus        61 fPMr~~v~~~~rvr~Ll~~G~~gyrp~r~GeRrRKsVRG~~is~di~qiN~~Iv~~G~k~i~glt~~  127 (127)
T PF01092_consen   61 FPMRQGVLGPGRVRLLLSKGGPGYRPRRKGERRRKSVRGNIISADISQINLVIVKKGEKPIPGLTDT  127 (127)
T ss_dssp             -BB-TT---SSEEEEEE-TTBTTB--SSTT--EEEEEE-SC--TTEEEEEEEEEE--SS--HHHHT-
T ss_pred             ceeecCCCCcceEEEEEeCCCcccccCcCCeEeeeeeeccEecCCeeeEEEEEEEecCccCccccCC
Confidence            3589999999999999999999999999999999999999999999999999999999999999996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins have been grouped on the basis of sequence similarities. Ribosomal protein S6 is the major substrate of protein kinases in eukaryotic ribosomes [] and may play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZM_Y 2XZN_Y 3U5C_G 3U5G_G 3J16_C.

>PRK04290 30S ribosomal protein S6e; Validated

Probab=99.85  E-value=4.5e-22  Score=161.02  Aligned_cols=54  Identities=35%  Similarity=0.540  Sum_probs=52.2

Q ss_pred             cccccCCCCCeEEEeecCCCccccCCCCCccceeeecceeecCCcceEEEEEEec
Q psy17953          5 TKWWLCPKDRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRK   59 (234)
Q Consensus         5 ~~~~gVlt~gRVrLLLskG~scYRPrr~GERKRKSVRGciV~~disvLNlvIVKk   59 (234)
                      -|++||++++|++|||++| +||||+++|||||||||||||++||+|||++||++
T Consensus        62 PM~~~v~~~~r~rlLl~~g-~gyrp~r~GeRrRKsVRG~~vs~di~qiN~~iv~~  115 (115)
T PRK04290         62 PMRPDVPGPVRRRILLSGG-PGFRPKEKGERRRKTVRGNTISDDIVQINAKVVEY  115 (115)
T ss_pred             cccCCccCCceEEEEecCC-CCCCcCCCCcEEEEEEEccEEcCCeeEEEEEEEcC
Confidence            5899999999999999999 99999999999999999999999999999999974

>COG2125 RPS6A Ribosomal protein S6E (S10) [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=4.4e-21  Score=156.19  Aligned_cols=58  Identities=48%  Similarity=0.728  Sum_probs=55.4

Q ss_pred             cccccCCCCCeEEEeecCCCccccCCCCCccceeeecceeecCCcceEEEEEEeccCCC
Q psy17953          5 TKWWLCPKDRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQE   63 (234)
Q Consensus         5 ~~~~gVlt~gRVrLLLskG~scYRPrr~GERKRKSVRGciV~~disvLNlvIVKkGek~   63 (234)
                      -|.+||++++|+++||++ ++||||+++|||||||||||||++||+|||++||++||++
T Consensus        63 PMr~dv~g~~r~riLls~-~~GyrP~~~GeRrRKtVRG~~Is~dI~QiN~~Iv~~ge~~  120 (120)
T COG2125          63 PMRPDVPGPRRVRILLSG-GPGYRPRRKGERKRKTVRGNIISPDIVQINLVIVEYGEKP  120 (120)
T ss_pred             cccCCCCCcceEEEEecc-CCCcCCCCCCceeeeeecccccchhheeeEEEEEecCCCC
Confidence            489999999999999995 6999999999999999999999999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	234
3u5c_G	236	The Structure Of The Eukaryotic Ribosome At 3.0 A R		9e-37
2xzm_Y	293	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-30
3zey_3	250	High-resolution Cryo-electron Microscopy Structure		2e-28

>pdb|3U5C|G Chain G, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 236

Iteration: 1
 Score =  149 bits (377), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 78/119 (65%), Positives = 93/119 (78%), Gaps = 10/119 (8%)
Query: 15  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
           R++LLL+K  SCYRPRR GERKRKSVRG IV  +L+VLALV+V+KGEQE+ GLTDTT+P+
Sbjct: 72  RIKLLLTKNVSCYRPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTDTTVPK 131
Query: 75  RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLY-KAPKIQRLITP 132
           RLGPKRA+ IRK F LSKEDDVR +VI+R +          K  K Y KAPKIQRL+TP
Sbjct: 132 RLGPKRANNIRKFFGLSKEDDVRDFVIRREVT---------KGEKTYTKAPKIQRLVTP 181

>pdb|2XZM|Y Chain Y, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 293

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/121 (61%), Positives = 90/121 (74%), Gaps = 10/121 (8%)
Query: 15  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
           RVRLLLS+GHSC+  RR+G RKRKSVRGCIV  ++ VLAL +V+KG  EI GLT  T+PR
Sbjct: 72  RVRLLLSEGHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIVKKGVAEIDGLTTVTLPR 131
Query: 75  RLGPKRASKIRKLFNLSKEDD---VRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLIT 131
           +LGPKRA+ I+KLF L KEDD   +++ VI+RT   K AK GK +     K PKIQRLIT
Sbjct: 132 KLGPKRANNIKKLFGLKKEDDPILIKKSVIRRTF--KTAK-GKDRT----KCPKIQRLIT 184
Query: 132 P 132
           P
Sbjct: 185 P 185

>pdb|3ZEY|3 Chain 3, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 250

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/120 (56%), Positives = 87/120 (72%), Gaps = 9/120 (7%)
Query: 15  RVRLLLSKGHSCYRPRR--TGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTI 72
           RV LL+ +G   +   R   GER+RKS+RGCI+ S+++VL + V + GEQ I G+TD ++
Sbjct: 73  RVSLLVKRGAVGFNTFRGYQGERRRKSLRGCILGSDIAVLNVTVEKVGEQPIEGVTDVSV 132
Query: 73  PRRLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITP 132
           PRRLGPKRA+KIRKLFNL + DDVR+YVI+R    K  KEGKK     +KAPKIQRLIT 
Sbjct: 133 PRRLGPKRANKIRKLFNLGRTDDVRKYVIRR----KVTKEGKK---DRFKAPKIQRLITS 185

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	234
3u5c_G	236	RP9, S10, YS4, 40S ribosomal protein S6-A; transla	9e-48
2xzm_Y	293	RPS6E; ribosome, translation; 3.93A {Tetrahymena t	1e-41
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3u5c_G RP9, S10, YS4, 40S ribosomal protein S6-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3j16_C 3u5g_G Length = 236

 Score =  156 bits (396), Expect = 9e-48
 Identities = 106/170 (62%), Positives = 128/170 (75%), Gaps = 8/170 (4%)

Query: 15  RVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPR 74
           R++LLL+K  SCYRPRR GERKRKSVRG IV  +L+VLALV+V+KGEQE+ GLTDTT+P+
Sbjct: 72  RIKLLLTKNVSCYRPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTDTTVPK 131

Query: 75  RLGPKRASKIRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVT 134
           RLGPKRA+ IRK F LSKEDDVR +VI+R        +G+K      KAPKIQRL+TP  
Sbjct: 132 RLGPKRANNIRKFFGLSKEDDVRDFVIRR-----EVTKGEKTY---TKAPKIQRLVTPQR 183

Query: 135 LQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRRSS 184
           LQRKRH  ALK R    ++E AAEYA+LLA R+ E+K  K + RKRR SS
Sbjct: 184 LQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKRRASS 233

>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Y Length = 293

 Score =  142 bits (359), Expect = 1e-41
 Identities = 92/220 (41%), Positives = 118/220 (53%), Gaps = 11/220 (5%)

Query: 11  PKDRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDT 70
               RVRLLLS+GHSC+  RR+G RKRKSVRGCIV  ++ VLAL +V+KG  EI GLT  
Sbjct: 68  MVRGRVRLLLSEGHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIVKKGVAEIDGLTTV 127

Query: 71  TIPRRLGPKRASKIRKLFNLSKEDD---VRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQ 127
           T+PR+LGPKRA+ I+KLF L KEDD   +++ VI+RT      K+         K PKIQ
Sbjct: 128 TLPRKLGPKRANNIKKLFGLKKEDDPILIKKSVIRRTFKTAKGKDR-------TKCPKIQ 180

Query: 128 RLITPVTLQRKRHLLALKKRRCLKRKEQAAEYAKLLAIRIKEKK-KAKEDERKRRRSSSL 186
           RLITP  + RK+   A K +R +K      EY K L+   K++  KA         +   
Sbjct: 181 RLITPERILRKKVYKAEKTQRYVKTNAAKEEYEKFLSEWKKQRAAKAHAASAPVVEAPKK 240

Query: 187 RLSTASSEPAAKKPAPAAPVTKAAPAPAAQAKGAKGAAAA 226
             +    +P A K  PAA     A    A    A      
Sbjct: 241 VEAPKKVDPKAAKTTPAATKATPAATKVAPKTQAAKTTTP 280

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 26/159 (16%), Positives = 56/159 (35%), Gaps = 33/159 (20%)

Query: 46  DSNLSVLALVVVRKGEQEIPGLTDTTIPRRL---------GPKRASKIRKLFNLSKEDDV 96
           D   S+L   +  +  Q++P    TT PRRL         G       + + N  K   +
Sbjct: 301 DEVKSLLLKYLDCR-PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV-NCDKLTTI 358

Query: 97  RQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQR---LITPVTLQR---------KRHLLA- 143
            +  +   L P        + RK++    +      I  + L              ++  
Sbjct: 359 IESSLN-VLEPA-------EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410

Query: 144 LKKRRCLKRKEQAAEYAKLLAIRIKEKKKAKEDERKRRR 182
           L K   ++++ + +  + + +I ++ K K + +    R 
Sbjct: 411 LHKYSLVEKQPKESTIS-IPSIYLELKVKLENEYALHRS 448

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	234
3u5c_G	236	RP9, S10, YS4, 40S ribosomal protein S6-A; transla	100.0
2xzm_Y	293	RPS6E; ribosome, translation; 3.93A {Tetrahymena t	100.0
3j20_G	125	30S ribosomal protein S6E; archaea, archaeal, KINK	99.88

>3u5c_G RP9, S10, YS4, 40S ribosomal protein S6-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3j16_C 3u5g_G

Probab=100.00  E-value=7.8e-79  Score=536.55  Aligned_cols=171  Identities=61%  Similarity=0.902  Sum_probs=162.2

Q ss_pred             ecccccCCCCCeEEEeecCCCccccCCCCCccceeeecceeecCCcceEEEEEEeccCCCCCCCCCCCCCCccCCCchhh
Q psy17953          4 ITKWWLCPKDRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPRRLGPKRASK   83 (234)
Q Consensus         4 ~~~~~gVlt~gRVrLLLskG~scYRPrr~GERKRKSVRGciV~~disvLNlvIVKkGek~IpgLTD~tvPrrLGPKRAsk   83 (234)
                      +-|+|||||++||+|||++||+||||+++|||+||||||||||+||||||++||++||+|||||||+++|++|||||||+
T Consensus        61 FPMkqgVl~~~rvrlLLskG~~~yrprr~GERkRKsVRGciV~~~is~lNlvIVkkGek~IpgLtd~~~p~~lgPKRas~  140 (236)
T 3u5c_G           61 FPMKQGVLLPTRIKLLLTKNVSCYRPRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTDTTVPKRLGPKRANN  140 (236)
T ss_dssp             CBBCTTCCCSSEEEEEECSSBTTBCCSSTTCCEEEEEECSBCCTTEEEEEEEEEECCSSCCHHHHTCCCCCSCCCCBHHH
T ss_pred             ccccCCcCCCceEEEEecCCCCccCCCCCCceeeeeeeeeEecCCceeEEEEEEecCCccCccccCcccccccCCchhhh
Confidence            35999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhCCCCcCccccceecccCCCCCCCCCCccccccccCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17953         84 IRKLFNLSKEDDVRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVTLQRKRHLLALKKRRCLKRKEQAAEYAKLL  163 (234)
Q Consensus        84 IRKLFnLSKeDDVrkyVirr~l~~~~~kegkK~~~~~tKaPKIQRLVTP~~LQrKr~~~alKk~r~~k~keeaaeYakLL  163 (234)
                      |||||||||+||||+||||++|+     ||+|++   +|||||||||||++||||++++++|++++++++||++||++||
T Consensus       141 irklfnlsk~ddVr~yvvrr~l~-----~gkk~~---~kapKIQrlvtp~~lqrk~~~~a~kk~r~~k~keea~eY~kll  212 (236)
T 3u5c_G          141 IRKFFGLSKEDDVRDFVIRREVT-----KGEKTY---TKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLL  212 (236)
T ss_dssp             HHHHHTCTTTSCSSSSSCCEEEE-----CSSCEE---EECCCCBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHhCCCcccchhheeeeeecc-----cCCCCC---CCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999993     788998   9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhHHHHHhhh
Q psy17953        164 AIRIKEKKKAKEDERKRRR  182 (234)
Q Consensus       164 akr~ke~k~~~~~~~krrr  182 (234)
                      ++||+|++++++++..+++
T Consensus       213 a~r~ke~k~~~~~~~~~r~  231 (236)
T 3u5c_G          213 AKRLSERKAEKAEIRKRRA  231 (236)
T ss_dssp             HHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999977643443

>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Y

Probab=100.00  E-value=4.7e-74  Score=517.28  Aligned_cols=165  Identities=49%  Similarity=0.731  Sum_probs=161.1

Q ss_pred             ecccccCCCCCeEEEeecCCCccccCCCCCccceeeecceeecCCcceEEEEEEeccCCCCCCCCCCCCCCccCCCchhh
Q psy17953          4 ITKWWLCPKDRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVVRKGEQEIPGLTDTTIPRRLGPKRASK   83 (234)
Q Consensus         4 ~~~~~gVlt~gRVrLLLskG~scYRPrr~GERKRKSVRGciV~~disvLNlvIVKkGek~IpgLTD~tvPrrLGPKRAsk   83 (234)
                      +-|+|||||++||+|||++||+||||+++|||+||||||||||+|||||||+||++||++||||||+++||+|||||||+
T Consensus        61 FPMkqgVl~~~RvrLLLskG~sgYRPrr~GERKRKSVRGciVs~disqLNlvIVkkGek~IpgLTD~~~PrrlGPKRAsk  140 (293)
T 2xzm_Y           61 FPMKQGVMVRGRVRLLLSEGHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIVKKGVAEIDGLTTVTLPRKLGPKRANN  140 (293)
T ss_dssp             CBBCTTCCCSSEEEEEECTTCSSCCCSSSCCCEEEEEECSSCCTTEEEEEEEEEECCSSCCHHHHTCCCCCCCCCCSHHH
T ss_pred             ccccCCccCCceEEEEecCCCCCCCCCCCCceeeeeeeeeeecCCceeEEEEEEecCCccCccccCCcCCCCCCCchhhh
Confidence            45999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhCCCCcCc---cccceecccCCCCCCCCCCccccccccCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17953         84 IRKLFNLSKEDD---VRQYVIKRTLPPKPAKEGKKKVRKLYKAPKIQRLITPVTLQRKRHLLALKKRRCLKRKEQAAEYA  160 (234)
Q Consensus        84 IRKLFnLSKeDD---VrkyVirr~l~~~~~kegkK~~~~~tKaPKIQRLVTP~~LQrKr~~~alKk~r~~k~keeaaeYa  160 (234)
                      ||||||||++||   ||+||||++++    +||+|++   +|+|||||||||.+||||++++++|++++++++||++||+
T Consensus       141 IRKlFnLsKeDD~~~VrkyVirr~~~----kegkk~~---~KaPKIQRLVTp~~lqrKr~~~a~Kk~r~~k~keea~eY~  213 (293)
T 2xzm_Y          141 IKKLFGLKKEDDPILIKKSVIRRTFK----TAKGKDR---TKCPKIQRLITPERILRKKVYKAEKTQRYVKTNAAKEEYE  213 (293)
T ss_dssp             HHHHHCCCTTCCHHHHHHTSCCEEEE----CTTSCEE---EECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHhCCCcccchhhhhhhheecccc----ccCCccc---ccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999   99999999997    8899998   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhH
Q psy17953        161 KLLAIRIKEKKKAKE  175 (234)
Q Consensus       161 kLLakr~ke~k~~~~  175 (234)
                      +||++|++|++++++
T Consensus       214 klla~r~~e~k~~~~  228 (293)
T 2xzm_Y          214 KFLSEWKKQRAAKAH  228 (293)
T ss_dssp             HHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998763

>3j20_G 30S ribosomal protein S6E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.88  E-value=1.7e-23  Score=170.28  Aligned_cols=52  Identities=37%  Similarity=0.588  Sum_probs=50.9

Q ss_pred             cccccCCCCCeEEEeecCCCccccCCCCCccceeeecceeecCCcceEEEEEE
Q psy17953          5 TKWWLCPKDRRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSNLSVLALVVV   57 (234)
Q Consensus         5 ~~~~gVlt~gRVrLLLskG~scYRPrr~GERKRKSVRGciV~~disvLNlvIV   57 (234)
                      -|+|||+|++||+|||++| +||||+++||||||||||||||+||+|||++||
T Consensus        73 PMkqgV~~~~rvrlLLskG-~gyrprr~GeRkRKsVRG~~V~~~i~~lNlviv  124 (125)
T 3j20_G           73 PMRPDIHGPRRVRVLLSKG-PGFRPKEKGERRKKTVRGNTISPEIVQVNVKLV  124 (125)
T ss_dssp             BBCTTCCSSSEEEEECCSS-CSSCCCCSSCCCEEEEECSSCCTTEEEEEEEEC
T ss_pred             cccCCcCCCceEEEEecCC-CccCCCCCCcEeeEEeeceEEcCCeEEEEEEEe
Confidence            5899999999999999999 999999999999999999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00