Psyllid ID: psy17997

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Protein Sequence
MSENVTDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHVRTETVEEKAGGYVCAIATMRALNDAFAGLYHTNKRTSPAAVE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEcccccccccccccccccccccccccEEcccccccccHHHHHccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccccccccEEcccEEEccccccccccccccccccEEEEEcEEEEccccccccHHHHHHcccHHHcccccHHHHccccHHHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
msenvtdlpalfsqpsqdlpkhfssgirigsnlglsvpaivkpelgplykyeptikmidgpdypswddvrrgnylKHVRTetveekaggYVCAIATMRALNDAFAGLyhtnkrtspaave
Flexible Loop (DISEMBL)
msenvtdlpalfsqpsqdLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHvrtetveekagGYVCAIATMRALNDAFAGLyhtnkrtspaave
Low Complexity Region (SEG)
MSENVTDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHVRTETVEEKAGGYVCAIATMRALNDAFAGLYHTNKRTSPAAVE
Disordered region (IsUnstruct)
*************************GIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHVRTETVEEKAGGYVCAIATMRALNDAFAGLYHT**********
Disordered Region (DISOPRED)
*************************GIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHVRTETV**KAGGYVCAIATMRALNDAFAGLYHTN*********
Disordered Region (DISEMBL)
********PALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHVRTETVEEKAGGYVCAIATMRALNDAFAGLYHTN*********
Disordered Region (DISPRO)
*****TDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHVRTETVEEKAGGYVCAIATMRALNDAFAGLYHTN*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSENVTDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHVRTETVEEKAGGYVCAIATMRALNDAFAGLYHTNKRTSPAAVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	120	2.2.26 [Sep-21-2011]
P51949	309	CDK-activating kinase ass	yes	N/A	0.833	0.323	0.378	4e-11
P51948	309	CDK-activating kinase ass	yes	N/A	0.833	0.323	0.378	1e-10
P51951	309	CDK-activating kinase ass	N/A	N/A	0.691	0.268	0.418	3e-10
P51950	324	CDK-activating kinase ass	N/A	N/A	0.75	0.277	0.387	2e-06

>sp|P51949|MAT1_MOUSE CDK-activating kinase assembly factor MAT1 OS=Mus musculus GN=Mnat1 PE=2 SV=2

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 3/103 (2%)

Query: 6   TDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPS 65
           T L     +P    P  FS+GI++G  + L+   I K E   LY+Y+P      GP  P 
Sbjct: 206 TQLEMQLEKPRSMKPVTFSTGIKMGQQISLA--PIQKLE-EALYEYQPLQIETCGPQVPE 262

Query: 66  WDDVRRGNYLKHVRTETVEEKAGGYVCAIATMRALNDAFAGLY 108
            + + R  YL HVR  + ++ AGGY  ++A  RAL DAF+GL+
Sbjct: 263 QELLGRLGYLNHVRAASPQDLAGGYTSSLACHRALQDAFSGLF 305

Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. CAK activates the cyclin-associated kinases CDK1, CDK2, CDK4 and CDK6 by threonine phosphorylation. CAK complexed to the core-TFIIH basal transcription factor activates RNA polymerase II by serine phosphorylation of the repetitive C-terminus domain (CTD) of its large subunit (POLR2A), allowing its escape from the promoter and elongation of the transcripts. Involved in cell cycle control and in RNA transcription by RNA polymerase II.
Mus musculus (taxid: 10090)

>sp|P51948|MAT1_HUMAN CDK-activating kinase assembly factor MAT1 OS=Homo sapiens GN=MNAT1 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 3/103 (2%)

Query: 6   TDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPS 65
           T L     +P    P  FS+GI++G ++ L+   I K E   LY+Y+P      GP  P 
Sbjct: 206 TQLEMQLEKPKPVKPVTFSTGIKMGQHISLA--PIHKLE-EALYEYQPLQIETYGPHVPE 262

Query: 66  WDDVRRGNYLKHVRTETVEEKAGGYVCAIATMRALNDAFAGLY 108
            + + R  YL HVR  + ++ AGGY  ++A  RAL DAF+GL+
Sbjct: 263 LEMLGRLGYLNHVRAASPQDLAGGYTSSLACHRALQDAFSGLF 305

Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. CAK activates the cyclin-associated kinases CDK1, CDK2, CDK4 and CDK6 by threonine phosphorylation. CAK complexed to the core-TFIIH basal transcription factor activates RNA polymerase II by serine phosphorylation of the repetitive C-terminus domain (CTD) of its large subunit (POLR2A), allowing its escape from the promoter and elongation of the transcripts. Involved in cell cycle control and in RNA transcription by RNA polymerase II.

Homo sapiens (taxid: 9606)

>sp|P51951|MAT1_XENLA CDK-activating kinase assembly factor MAT1 OS=Xenopus laevis GN=mnat1 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 3/86 (3%)

Query: 23  FSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHVRTET 82
           FS+GI+ G ++  SVP     E   LY+Y+P      GP  P  + + R  YL HVR   
Sbjct: 223 FSTGIKKGHHIA-SVPVTKIEE--ALYQYQPIHIETYGPQVPHIEMLGRQGYLNHVRAAA 279

Query: 83  VEEKAGGYVCAIATMRALNDAFAGLY 108
            ++ AGGYV ++A  RAL DAF+GL+
Sbjct: 280 PQDLAGGYVSSLACHRALQDAFSGLF 305

Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.

Xenopus laevis (taxid: 8355)

>sp|P51950|MAT1_MARGL CDK-activating kinase assembly factor MAT1 OS=Marthasterias glacialis PE=1 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 19  LPKH--FSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLK 76
           LPK   FS+GI++G     +   I K E   L+ YE       GP  PS D++    Y K
Sbjct: 216 LPKKTTFSTGIKVGFGYQDTFLPIPKQE-EILFTYEEETYETYGPSAPSTDELDTQRYNK 274

Query: 77  HVRTETVEEKAGGYVCAIATMRALNDAFAGLYH 109
           HVR  + +  AGGY   +A +RAL +AF+GL +
Sbjct: 275 HVRPASPQGIAGGYSQNLACLRALQEAFSGLLY 307

Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex.

Marthasterias glacialis (taxid: 7609)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
322798720	323	hypothetical protein SINV_10084 [Solenop	0.7	0.260	0.456	2e-14
307187513	317	CDK-activating kinase assembly factor MA	0.741	0.280	0.415	2e-14
350417960	320	PREDICTED: CDK-activating kinase assembl	0.783	0.293	0.425	3e-14
189239528	296	PREDICTED: similar to Mat1 CG7614-PA [Tr	0.725	0.293	0.446	3e-14
270010607	282	hypothetical protein TcasGA2_TC010030 [T	0.725	0.308	0.446	3e-14
340715615	320	PREDICTED: CDK-activating kinase assembl	0.733	0.275	0.443	4e-14
118791406	314	AGAP008991-PA [Anopheles gambiae str. PE	0.733	0.280	0.465	5e-14
48106220	320	PREDICTED: CDK-activating kinase assembl	0.733	0.275	0.420	7e-14
380019240	320	PREDICTED: CDK-activating kinase assembl	0.733	0.275	0.420	9e-14
20151823	320	RH31013p [Drosophila melanogaster]	0.741	0.278	0.415	1e-13

>gi|322798720|gb|EFZ20318.1| hypothetical protein SINV_10084 [Solenopsis invicta]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 57/92 (61%), Gaps = 8/92 (8%)

Query: 22  HFSSGIRIGSNLG----LSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKH 77
            FS+GI+ G N G    LSVP I   E GPLY Y P  + ++GP  PSW +++   Y+ H
Sbjct: 224 QFSTGIKFG-NQGNQNYLSVPKI---EEGPLYTYTPIRQQVEGPTPPSWRELQGRGYVTH 279

Query: 78  VRTETVEEKAGGYVCAIATMRALNDAFAGLYH 109
           +R E   E+AGG+   +A +RAL +A AGLYH
Sbjct: 280 IRNECKSERAGGFRAHVACLRALQEAMAGLYH 311

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187513|gb|EFN72564.1| CDK-activating kinase assembly factor MAT1 [Camponotus floridanus]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 54/89 (60%)

Query: 22  HFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHVRTE 81
            FS+GI+ G+    S  ++ K E GPLY Y P  + I+GP  P W +++   Y+ HVR E
Sbjct: 218 QFSTGIKFGNQGNQSYLSVPKIEEGPLYSYTPIRQQIEGPSPPGWREIQARGYVSHVRNE 277

Query: 82  TVEEKAGGYVCAIATMRALNDAFAGLYHT 110
              ++AGG+   +A +RAL +A AGLYH 
Sbjct: 278 CDRDRAGGFKAHVACLRALQEAMAGLYHN 306

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417960|ref|XP_003491665.1| PREDICTED: CDK-activating kinase assembly factor MAT1-like [Bombus impatiens]

 Score = 82.8 bits (203), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 56/94 (59%)

Query: 22  HFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHVRTE 81
            FS+GI+  +  G S   I K E GPLY Y P  +  DGP  PSW +++   Y+ HVR E
Sbjct: 221 QFSTGIKFTNQGGQSYMPIPKIEEGPLYCYTPIRQGTDGPTPPSWRELQARGYVSHVRVE 280

Query: 82  TVEEKAGGYVCAIATMRALNDAFAGLYHTNKRTS 115
           +  E+AGG+   +A +RAL ++ AGLYH   R+ 
Sbjct: 281 SSAERAGGFKAHVACLRALQESMAGLYHNPSRSQ 314

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239528|ref|XP_001816137.1| PREDICTED: similar to Mat1 CG7614-PA [Tribolium castaneum]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 56/94 (59%), Gaps = 7/94 (7%)

Query: 22  HFSSGIRIGSNLG---LSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHV 78
           HFS+GI+IG       L VP     E GPL+ Y+P +   DGP  P+ +++    Y  HV
Sbjct: 203 HFSTGIQIGRQTQSSFLPVPI----EEGPLFVYKPLVLQTDGPKLPTDEEIASMGYTNHV 258

Query: 79  RTETVEEKAGGYVCAIATMRALNDAFAGLYHTNK 112
           R E  +E+AGG+   IA +RAL DAF+GLYH  K
Sbjct: 259 RAENEQERAGGFRSNIACVRALQDAFSGLYHVRK 292

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270010607|gb|EFA07055.1| hypothetical protein TcasGA2_TC010030 [Tribolium castaneum]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 56/94 (59%), Gaps = 7/94 (7%)

Query: 22  HFSSGIRIGSNLG---LSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHV 78
           HFS+GI+IG       L VP     E GPL+ Y+P +   DGP  P+ +++    Y  HV
Sbjct: 189 HFSTGIQIGRQTQSSFLPVPI----EEGPLFVYKPLVLQTDGPKLPTDEEIASMGYTNHV 244

Query: 79  RTETVEEKAGGYVCAIATMRALNDAFAGLYHTNK 112
           R E  +E+AGG+   IA +RAL DAF+GLYH  K
Sbjct: 245 RAENEQERAGGFRSNIACVRALQDAFSGLYHVRK 278

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715615|ref|XP_003396306.1| PREDICTED: CDK-activating kinase assembly factor MAT1-like [Bombus terrestris]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 54/88 (61%)

Query: 22  HFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHVRTE 81
            FS+GI+  +  G S   I K E GPLY Y P  +  DGP  PSW +++   Y+ HVR E
Sbjct: 221 QFSTGIKFTNQGGQSYMPIPKIEEGPLYCYTPIRQGTDGPTPPSWRELQARGYVSHVRVE 280

Query: 82  TVEEKAGGYVCAIATMRALNDAFAGLYH 109
           +  E+AGG+   +A +RAL ++ AGLYH
Sbjct: 281 SSAERAGGFKAHVACLRALQESMAGLYH 308

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118791406|ref|XP_319742.3| AGAP008991-PA [Anopheles gambiae str. PEST] gi|116117584|gb|EAA14858.3| AGAP008991-PA [Anopheles gambiae str. PEST]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 53/88 (60%)

Query: 22  HFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHVRTE 81
           HFSSGI  G        A+ K E GPLY YEP     DGP  PS ++V    Y++H+R E
Sbjct: 226 HFSSGIATGFQGQHGFLAVPKLEEGPLYVYEPQGFETDGPAPPSLEEVINNGYIRHIRVE 285

Query: 82  TVEEKAGGYVCAIATMRALNDAFAGLYH 109
            + EKAGG+   I+ +RA+ +A AGLYH
Sbjct: 286 NLAEKAGGFQTNISCLRAIQEALAGLYH 313

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48106220|ref|XP_396068.1| PREDICTED: CDK-activating kinase assembly factor MAT1-like isoform 2 [Apis mellifera] gi|328790414|ref|XP_003251416.1| PREDICTED: CDK-activating kinase assembly factor MAT1-like isoform 1 [Apis mellifera]

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 55/88 (62%)

Query: 22  HFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHVRTE 81
            FS+GI+  +  G +   I K E GPLY Y P  ++ DGP  PSW +++   Y+ HVR E
Sbjct: 221 QFSTGIKFSNQGGQNYLPIPKIEEGPLYTYTPIKQITDGPAPPSWRELQARGYVSHVRAE 280

Query: 82  TVEEKAGGYVCAIATMRALNDAFAGLYH 109
           +  E+AGG+   +A +RAL ++ AGLY+
Sbjct: 281 SAAERAGGFKAHVACLRALQESMAGLYY 308

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019240|ref|XP_003693519.1| PREDICTED: CDK-activating kinase assembly factor MAT1-like [Apis florea]

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 55/88 (62%)

Query: 22  HFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHVRTE 81
            FS+GI+  +  G +   I K E GPLY Y P  ++ DGP  PSW +++   Y+ HVR E
Sbjct: 221 QFSTGIKFSNQGGQNYLPIPKIEEGPLYTYTPIKQVTDGPAPPSWRELQARGYVSHVRAE 280

Query: 82  TVEEKAGGYVCAIATMRALNDAFAGLYH 109
           +  E+AGG+   +A +RAL ++ AGLY+
Sbjct: 281 SAAERAGGFKAHVACLRALQESMAGLYY 308

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|20151823|gb|AAM11271.1| RH31013p [Drosophila melanogaster]

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 54/89 (60%)

Query: 22  HFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHVRTE 81
            FS+GI+ G     S+  + K E GPL+ YEP +   +GP  P  +++  G Y+ H+R E
Sbjct: 223 EFSTGIKFGQTADPSLLPVPKSEEGPLFVYEPLVPFSEGPAMPPTNEIVSGGYIAHIRAE 282

Query: 82  TVEEKAGGYVCAIATMRALNDAFAGLYHT 110
           T +E AGG+  A+A  RAL +A  GLY+T
Sbjct: 283 TPQENAGGFTSALACERALQEALQGLYYT 311

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
FB|FBgn0024956	320	Mat1 "Mat1" [Drosophila melano	0.733	0.275	0.409	1e-14
UNIPROTKB|E1BVP0	309	MNAT1 "Uncharacterized protein	0.833	0.323	0.388	6.2e-12
UNIPROTKB|H0YJ92	169	MNAT1 "CDK-activating kinase a	0.833	0.591	0.388	8.2e-12
UNIPROTKB|Q3SX39	309	MNAT1 "MNAT1 protein" [Bos tau	0.833	0.323	0.388	1.3e-11
UNIPROTKB|E2QVF4	309	MNAT1 "Uncharacterized protein	0.833	0.323	0.388	1.3e-11
RGD|628874	309	Mnat1 "menage a trois homolog	0.833	0.323	0.388	1.7e-11
UNIPROTKB|P51948	309	MNAT1 "CDK-activating kinase a	0.833	0.323	0.388	2.3e-11
MGI|MGI:106207	309	Mnat1 "menage a trois 1" [Mus	0.833	0.323	0.388	2.3e-11
ZFIN|ZDB-GENE-041010-203	309	mnat1 "menage a trois homolog	0.691	0.268	0.383	3e-10
UNIPROTKB|G3V1U8	267	MNAT1 "CDK-activating kinase a	0.608	0.273	0.405	5.6e-08

FB|FBgn0024956 Mat1 "Mat1" [Drosophila melanogaster (taxid:7227)]

 Score = 190 (71.9 bits), Expect = 1.0e-14, P = 1.0e-14
 Identities = 36/88 (40%), Positives = 53/88 (60%)

Query:    23 FSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHVRTET 82
             FS+GI+ G     S+  + K E GPL+ YEP +   +GP  P  +++    Y+ H+R ET
Sbjct:   224 FSTGIKFGQTADPSLLPVPKSEEGPLFVYEPLVPFSEGPAMPPTNEIVSRGYIAHIRAET 283

Query:    83 VEEKAGGYVCAIATMRALNDAFAGLYHT 110
              +E AGG+  A+A  RAL +A  GLY+T
Sbjct:   284 PQENAGGFTSALACERALQEALQGLYYT 311

GO:0005675 "holo TFIIH complex" evidence=ISS;IDA

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS

GO:0008353 "RNA polymerase II carboxy-terminal domain kinase activity" evidence=IDA

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=IDA

GO:0032806 "carboxy-terminal domain protein kinase complex" evidence=IDA

GO:0007049 "cell cycle" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1BVP0 MNAT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 165 (63.1 bits), Expect = 6.2e-12, P = 6.2e-12
 Identities = 40/103 (38%), Positives = 58/103 (56%)

Query:     6 TDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPS 65
             T L     +P    P  FS+GI++G ++ L+ P I K E   LY+Y+P      GP  P 
Sbjct:   206 TQLEMQLEKPKPVKPVTFSTGIKMGQHISLA-P-IQKLE-ETLYEYQPLQVETYGPPVPE 262

Query:    66 WDDVRRGNYLKHVRTETVEEKAGGYVCAIATMRALNDAFAGLY 108
              + + R  YL HVR  + ++ AGGY  ++A  RAL DAF+GL+
Sbjct:   263 LESLGRLGYLNHVRAASPQDLAGGYTSSLACHRALQDAFSGLF 305

GO:0007049 "cell cycle" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005675 "holo TFIIH complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0008353 "RNA polymerase II carboxy-terminal domain kinase activity" evidence=IEA

GO:0021591 "ventricular system development" evidence=IEA

GO:0044236 "multicellular organismal metabolic process" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0051592 "response to calcium ion" evidence=IEA

UNIPROTKB|H0YJ92 MNAT1 "CDK-activating kinase assembly factor MAT1" [Homo sapiens (taxid:9606)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 40/103 (38%), Positives = 58/103 (56%)

Query:     6 TDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPS 65
             T L     +P    P  FS+GI++G ++ L+ P I K E   LY+Y+P      GP  P 
Sbjct:    66 TQLEMQLEKPKPVKPVTFSTGIKMGQHISLA-P-IHKLEEA-LYEYQPLQIETYGPHVPE 122

Query:    66 WDDVRRGNYLKHVRTETVEEKAGGYVCAIATMRALNDAFAGLY 108
              + + R  YL HVR  + ++ AGGY  ++A  RAL DAF+GL+
Sbjct:   123 LEMLGRLGYLNHVRAASPQDLAGGYTSSLACHRALQDAFSGLF 165

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0021591 "ventricular system development" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0044236 "multicellular organismal metabolic process" evidence=IEA

GO:0048661 "positive regulation of smooth muscle cell proliferation" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0051592 "response to calcium ion" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q3SX39 MNAT1 "MNAT1 protein" [Bos taurus (taxid:9913)]

 Score = 162 (62.1 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 40/103 (38%), Positives = 58/103 (56%)

Query:     6 TDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPS 65
             T L     +P    P  FS+GI++G ++ L+ P I K E   LY+Y+P      GP  P 
Sbjct:   206 TQLEMQIEKPKPIKPGTFSTGIKMGQHISLA-P-IQKLEEA-LYEYQPLQIETCGPQVPE 262

Query:    66 WDDVRRGNYLKHVRTETVEEKAGGYVCAIATMRALNDAFAGLY 108
              + + R  YL HVR  + ++ AGGY  ++A  RAL DAF+GL+
Sbjct:   263 LEMLGRLGYLNHVRAASPQDLAGGYTSSLACHRALQDAFSGLF 305

GO:0051592 "response to calcium ion" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0044236 "multicellular organismal metabolic process" evidence=IEA

GO:0021591 "ventricular system development" evidence=IEA

GO:0008353 "RNA polymerase II carboxy-terminal domain kinase activity" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005675 "holo TFIIH complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

UNIPROTKB|E2QVF4 MNAT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 162 (62.1 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 40/103 (38%), Positives = 58/103 (56%)

Query:     6 TDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPS 65
             T L     +P    P  FS+GI++G ++ L+ P I K E   LY+Y+P      GP  P 
Sbjct:   206 TQLEMQLEKPKPIKPVTFSTGIKMGQHISLA-P-IQKLEEA-LYEYQPLHIETCGPQVPD 262

Query:    66 WDDVRRGNYLKHVRTETVEEKAGGYVCAIATMRALNDAFAGLY 108
              + + R  YL HVR  + ++ AGGY  ++A  RAL DAF+GL+
Sbjct:   263 LEMLGRLGYLNHVRAASPQDLAGGYTSSLACHRALQDAFSGLF 305

GO:0051592 "response to calcium ion" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0044236 "multicellular organismal metabolic process" evidence=IEA

GO:0021591 "ventricular system development" evidence=IEA

GO:0008353 "RNA polymerase II carboxy-terminal domain kinase activity" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005675 "holo TFIIH complex" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

RGD|628874 Mnat1 "menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)" [Rattus norvegicus (taxid:10116)]

 Score = 161 (61.7 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 40/103 (38%), Positives = 57/103 (55%)

Query:     6 TDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPS 65
             T L     +P    P  FS+GI++G  + L+ P I K E   LY+Y+P      GP  P 
Sbjct:   206 TQLEMQLEKPKSMKPVTFSTGIKMGQQISLA-P-IQKLEEA-LYEYQPLQIETCGPQVPE 262

Query:    66 WDDVRRGNYLKHVRTETVEEKAGGYVCAIATMRALNDAFAGLY 108
              + + R  YL HVR  + ++ AGGY  ++A  RAL DAF+GL+
Sbjct:   263 QELLGRLGYLNHVRAASPQDLAGGYTSSLACHRALQDAFSGLF 305

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005675 "holo TFIIH complex" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA;ISO

GO:0007512 "adult heart development" evidence=IEA;ISO

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008353 "RNA polymerase II carboxy-terminal domain kinase activity" evidence=IEA;ISO

GO:0021591 "ventricular system development" evidence=IEA;ISO

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0044236 "multicellular organismal metabolic process" evidence=IEA;ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0047485 "protein N-terminus binding" evidence=IEA;ISO

GO:0048661 "positive regulation of smooth muscle cell proliferation" evidence=IMP

GO:0050790 "regulation of catalytic activity" evidence=IEA;ISO

GO:0051592 "response to calcium ion" evidence=IEA;ISO

GO:0004672 "protein kinase activity" evidence=ISO

UNIPROTKB|P51948 MNAT1 "CDK-activating kinase assembly factor MAT1" [Homo sapiens (taxid:9606)]

 Score = 160 (61.4 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 40/103 (38%), Positives = 58/103 (56%)

Query:     6 TDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPS 65
             T L     +P    P  FS+GI++G ++ L+ P I K E   LY+Y+P      GP  P 
Sbjct:   206 TQLEMQLEKPKPVKPVTFSTGIKMGQHISLA-P-IHKLEEA-LYEYQPLQIETYGPHVPE 262

Query:    66 WDDVRRGNYLKHVRTETVEEKAGGYVCAIATMRALNDAFAGLY 108
              + + R  YL HVR  + ++ AGGY  ++A  RAL DAF+GL+
Sbjct:   263 LEMLGRLGYLNHVRAASPQDLAGGYTSSLACHRALQDAFSGLF 305

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0021591 "ventricular system development" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0044236 "multicellular organismal metabolic process" evidence=IEA

GO:0048661 "positive regulation of smooth muscle cell proliferation" evidence=IEA

GO:0051592 "response to calcium ion" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0047485 "protein N-terminus binding" evidence=IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA;IMP

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IDA;TAS

GO:0005675 "holo TFIIH complex" evidence=IDA

GO:0008353 "RNA polymerase II carboxy-terminal domain kinase activity" evidence=IDA

GO:0008094 "DNA-dependent ATPase activity" evidence=IDA

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=TAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0000080 "G1 phase of mitotic cell cycle" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0000718 "nucleotide-excision repair, DNA damage removal" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=TAS

GO:0006289 "nucleotide-excision repair" evidence=TAS

GO:0006360 "transcription from RNA polymerase I promoter" evidence=TAS

GO:0006361 "transcription initiation from RNA polymerase I promoter" evidence=TAS

GO:0006362 "transcription elongation from RNA polymerase I promoter" evidence=TAS

GO:0006363 "termination of RNA polymerase I transcription" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS

GO:0006370 "7-methylguanosine mRNA capping" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0050434 "positive regulation of viral transcription" evidence=TAS

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

MGI|MGI:106207 Mnat1 "menage a trois 1" [Mus musculus (taxid:10090)]

 Score = 160 (61.4 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 40/103 (38%), Positives = 57/103 (55%)

Query:     6 TDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPS 65
             T L     +P    P  FS+GI++G  + L+ P I K E   LY+Y+P      GP  P 
Sbjct:   206 TQLEMQLEKPRSMKPVTFSTGIKMGQQISLA-P-IQKLEEA-LYEYQPLQIETCGPQVPE 262

Query:    66 WDDVRRGNYLKHVRTETVEEKAGGYVCAIATMRALNDAFAGLY 108
              + + R  YL HVR  + ++ AGGY  ++A  RAL DAF+GL+
Sbjct:   263 QELLGRLGYLNHVRAASPQDLAGGYTSSLACHRALQDAFSGLF 305

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005675 "holo TFIIH complex" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0006915 "apoptotic process" evidence=IMP

GO:0007049 "cell cycle" evidence=IEA

GO:0007512 "adult heart development" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0021591 "ventricular system development" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0044236 "multicellular organismal metabolic process" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0047485 "protein N-terminus binding" evidence=ISO

GO:0048661 "positive regulation of smooth muscle cell proliferation" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=IMP

GO:0051592 "response to calcium ion" evidence=IMP

ZFIN|ZDB-GENE-041010-203 mnat1 "menage a trois homolog 1" [Danio rerio (taxid:7955)]

 Score = 150 (57.9 bits), Expect = 3.0e-10, P = 3.0e-10
 Identities = 33/86 (38%), Positives = 52/86 (60%)

Query:    23 FSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHVRTET 82
             FS+GI +G  + L+  + V+ E+  LY Y+P      GP  P  D + R  +L HVR  +
Sbjct:   225 FSTGIMMGQTVSLASVSRVE-EV--LYCYQPLYIDTYGPPVPELDQLGRKGFLNHVRAAS 281

Query:    83 VEEKAGGYVCAIATMRALNDAFAGLY 108
             ++++AGGY   +A  RA+ DAF+GL+
Sbjct:   282 LQDQAGGYTSGLACHRAIQDAFSGLF 307

GO:0007049 "cell cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|G3V1U8 MNAT1 "CDK-activating kinase assembly factor MAT1" [Homo sapiens (taxid:9606)]

 Score = 128 (50.1 bits), Expect = 5.6e-08, P = 5.6e-08
 Identities = 30/74 (40%), Positives = 43/74 (58%)

Query:    35 LSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHVRTETVEEKAGGYVCAI 94
             +S+  I K E   LY+Y+P      GP  P  + + R  YL HVR  + ++ AGGY  ++
Sbjct:   191 ISLAPIHKLEEA-LYEYQPLQIETYGPHVPELEMLGRLGYLNHVRAASPQDLAGGYTSSL 249

Query:    95 ATMRALNDAFAGLY 108
             A  RAL DAF+GL+
Sbjct:   250 ACHRALQDAFSGLF 263

GO:0005634 "nucleus" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	120
TIGR00570	309	TIGR00570, cdk7, CDK-activating kinase assembly fa	5e-15

>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1

 Score = 68.7 bits (168), Expect = 5e-15
 Identities = 39/108 (36%), Positives = 60/108 (55%), Gaps = 3/108 (2%)

Query: 3   ENVTDLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPD 62
           +N   L     +P  + P  FS+GI++G  + L VP + K E   LY Y+P     +GP 
Sbjct: 203 KNSVKLEMQVEKPKPEKPNTFSTGIKMGYQISL-VP-VQKSEE-ALYPYQPLNIETEGPP 259

Query: 63  YPSWDDVRRGNYLKHVRTETVEEKAGGYVCAIATMRALNDAFAGLYHT 110
            P+ +++ R  YL HVR  + ++ AGGY   +A  RAL +AF+GL+  
Sbjct: 260 VPTLEELVRQGYLNHVRAASPQDIAGGYTSNLACERALQEAFSGLFWQ 307

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 309

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	120
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	99.87
KOG3800|consensus	300		99.87
PF06391	200	MAT1: CDK-activating kinase assembly factor MAT1;	96.51

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=99.87  E-value=2.5e-23  Score=173.17  Aligned_cols=102  Identities=35%  Similarity=0.689  Sum_probs=91.9

Q ss_pred             ccccccCCCCCCCCCccccceeeccccccccCCccCCccCCCceeeccccccCCCCCCCHHHhhhchhhhhcccccchhh
Q psy17997          7 DLPALFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHVRTETVEEK   86 (120)
Q Consensus         7 ~~~~~~~~~~~~k~~~FSTGIk~g~~~s~~~~pvpk~eeG~lY~Y~Pl~~~~~GP~~P~~e~L~~~GYl~HVR~~s~~e~   86 (120)
                      .+....+..+..|++.|+|||+++.+.+++  |+++.++ +.|.|+|+..+.+||..|+++++...||+.|||+++++.+
T Consensus       207 ~~k~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~py~Pf~g~~~~p~~y~~~~~~~~~y~~~~r~~~~~~~  283 (309)
T TIGR00570       207 KLEMQVEKPKPEKPNTFSTGIKMGYQISLV--PVQKSEE-ALYPYQPLNIETEGPPVPTLEELVRQGYLNHVRAASPQDI  283 (309)
T ss_pred             HHHhhhhhccccchhhhhhccccccccccc--ccCCCCC-CCCCcCCCCCCCCCCCCCCccccccccHHHHHhccCcccc
Confidence            344555666666777899999998777888  9988776 9999999999999999999999999999999999999999


Q ss_pred             cCchhhHHhHHHHHHHHhhcccCCC
Q psy17997         87 AGGYVCAIATMRALNDAFAGLYHTN  111 (120)
Q Consensus        87 AGGfts~laC~RALQEAfsgL~~~~  111 (120)
                      ||||++.+.|.|||||||+||++..
T Consensus       284 aGGy~~~~~~~RaL~EAF~GL~~fi  308 (309)
T TIGR00570       284 AGGYTSNLACERALQEAFSGLFWQP  308 (309)
T ss_pred             cCCcCHHHHHHHHHHHHHccCCccC
Confidence            9999999999999999999999865

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG3800|consensus

Probab=99.87  E-value=5.4e-23  Score=170.63  Aligned_cols=87  Identities=31%  Similarity=0.565  Sum_probs=83.2

Q ss_pred             CccccceeeccccccccCCccCCccCCCceeeccccccCCCCCCCHHHhhhchhhhhcccccchhhcCchhhHHhHHHHH
Q psy17997         21 KHFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTIKMIDGPDYPSWDDVRRGNYLKHVRTETVEEKAGGYVCAIATMRAL  100 (120)
Q Consensus        21 ~~FSTGIk~g~~~s~~~~pvpk~eeG~lY~Y~Pl~~~~~GP~~P~~e~L~~~GYl~HVR~~s~~e~AGGfts~laC~RAL  100 (120)
                      +.|+|+|+++ +.++.  |+++.+++++|.|+|+..+.+||++|+...+..+||++|+|+.+++++||||+++++|.|||
T Consensus       214 ~s~nt~ir~~-~~s~~--~~~n~~~~~~~pf~pl~~~~~g~~~~~~~~~v~~~~~~~~r~~~~~~~aggf~~~~~~~r~l  290 (300)
T KOG3800|consen  214 TSFNTIIRVS-SISLE--PNENSEESAAFPFEPLRGEKEGPPMPGTKKIVARGYFAHIRAHTPEELAGGFTSNLACERAL  290 (300)
T ss_pred             cchhheeecc-ccccc--cchhhhhccccccccccccccCCCCcChhhhhhhhhhHHhhcCChHHhhcCCcchHHHHHHH
Confidence            5799999998 66777  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccCC
Q psy17997        101 NDAFAGLYHT  110 (120)
Q Consensus       101 QEAfsgL~~~  110 (120)
                      ||||+||||.
T Consensus       291 ~ea~~Gl~~~  300 (300)
T KOG3800|consen  291 QEAFSGLFYE  300 (300)
T ss_pred             HHHhcccccC
Confidence            9999999973

>PF06391 MAT1: CDK-activating kinase assembly factor MAT1; InterPro: IPR015877 MAT1 (menage a trois 1) is a RING finger protein with a characteristic C3HC4 motif located in the N-terminal domain

Probab=96.51  E-value=0.00064  Score=54.33  Aligned_cols=42  Identities=36%  Similarity=0.426  Sum_probs=0.0

Q ss_pred             ccCCCCCCCCCccccceeeccccccccCCccCCccCCCceeeccc
Q psy17997         11 LFSQPSQDLPKHFSSGIRIGSNLGLSVPAIVKPELGPLYKYEPTI   55 (120)
Q Consensus        11 ~~~~~~~~k~~~FSTGIk~g~~~s~~~~pvpk~eeG~lY~Y~Pl~   55 (120)
                      .-++....+.+.|++|++++++.++.  |+|++++ ++|.|+|++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e-~~~~y~P~~  200 (200)
T PF06391_consen  159 ARRQEEQLKRKLFSTGIKKSQNQSFL--PVPKVEE-PLYPYTPLN  200 (200)
T ss_dssp             ---------------------------------------------
T ss_pred             HHHhHhhhhHHHhhhhhhhccccccc--ccccccC-CCCCCCCCC
Confidence            33444444556699999999888899  9999876 999999984

This entry represents the central region of MAT1. MAT1 stabilises the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex which then goes on to activate many of the CDK enzymes intimately involved in the cell cycle []. CDK7 forms a stable complex with cyclin H and MAT1 in vivo only when phosphorylated on either one of two residues (Ser164 or Thr170) in its T-loop. The requirement for MAT1 for the activation of CAK can be by-passed by the phosphorylation of CDK7 on the T-loop. The two mechanisms for CDK7 complex stabilisation and activation (MAT1 addition and T-loop phosphorylation), which can operate independently in vitro, actually cooperate under physiological conditions to maintain complex integrity. With prolonged exposure to elevated temperature, dissociation to monomeric subunits occurs in vivo when CDK7 is dephosphorylated, even in the presence of MAT1 []. The Cyclin H-MAT1-CDK7 complex also forms part of TFIIH, a multiprotein complex required for both transcription and DNA repair.; GO: 0007049 cell cycle, 0005634 nucleus; PDB: 1G25_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00