Psyllid ID: psy18006

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180
MCLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAGTLMFTPGGNRTRDLAISRQTRYRPS
ccEEEEEEEEccEEEEEccccccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccEEEEcccccccccccccccHHHHHHHHHHccccc
ccccEEEcccccEEEEEEcccccHHHcHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccEEEccccccccccccccccHHEEEEEEEcccccc
mclqtkilgsgaevsvsipptrhdiihtcdIYEDIAIaygynnipktmprfasiarqvplnklsdqlrGDIAQAGFTEVLTFALCSRDDVSVKLRQKMefipavhignpktlEFQIARTTLVPGLLKTLAankkmplplklfeisdivykdatagtlmftpggnrtrdlaisrqtryrps
mclqtkilgsgaevsvsipptrHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEfipavhignpktLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATagtlmftpggnrtrdlaisrqtryrps
MCLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAGTLMFTPGGNRTRDLAISRQTRYRPS
***********AEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAGTLMFTP*******************
*CLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPR**********NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAGT*****GGNRTRDLAISRQTRY***
MCLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAGTLMFTPGGNRTRDLAI*********
*CLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAGTLMFTPGGNRTRDLAISRQTRYR**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MCLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAGTLMFTPGGNRTRDLAISRQTRYRPS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query180 2.2.26 [Sep-21-2011]
Q9VCA5589 Probable phenylalanine--t yes N/A 0.838 0.256 0.673 4e-58
Q9WUA2589 Phenylalanine--tRNA ligas yes N/A 0.844 0.258 0.644 2e-54
Q9NSD9589 Phenylalanine--tRNA ligas yes N/A 0.85 0.259 0.640 3e-53
Q5R7F7589 Phenylalanine--tRNA ligas no N/A 0.85 0.259 0.627 5e-52
Q19713591 Phenylalanine--tRNA ligas yes N/A 0.944 0.287 0.517 7e-48
Q550D2 617 Phenylalanine--tRNA ligas yes N/A 0.916 0.267 0.445 1e-33
O13432592 Phenylalanine--tRNA ligas N/A N/A 0.766 0.233 0.496 5e-33
O42849589 Phenylalanine--tRNA ligas yes N/A 0.75 0.229 0.467 3e-32
P15624595 Phenylalanine--tRNA ligas yes N/A 0.766 0.231 0.492 3e-32
Q9SGE9598 Probable phenylalanine--t yes N/A 0.877 0.264 0.419 3e-30
>sp|Q9VCA5|SYFB_DROME Probable phenylalanine--tRNA ligase beta subunit OS=Drosophila melanogaster GN=CG5706 PE=2 SV=1 Back     alignment and function desciption
 Score =  223 bits (569), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 103/153 (67%), Positives = 124/153 (81%), Gaps = 2/153 (1%)

Query: 1   MCLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPL 60
           M L+ K+   G  + V IPPTRHD+IH CDIYED+AIAYGYNNI K++P F  IA+Q PL
Sbjct: 334 MYLEAKV--DGDSLVVKIPPTRHDVIHACDIYEDVAIAYGYNNIKKSLPAFMQIAKQFPL 391

Query: 61  NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTT 120
           NKL++QLR  +AQAGFTE LTF LCSRDD+  KL + ++ +PAVHIGNPKTLEFQ+ RTT
Sbjct: 392 NKLTEQLREQVAQAGFTEALTFTLCSRDDIGRKLNKNIDALPAVHIGNPKTLEFQVVRTT 451

Query: 121 LVPGLLKTLAANKKMPLPLKLFEISDIVYKDAT 153
           L+PGLLKTL AN+KMPLPLKLFEISD+V  D +
Sbjct: 452 LLPGLLKTLVANRKMPLPLKLFEISDVVVADES 484

Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 0
>sp|Q9WUA2|SYFB_MOUSE Phenylalanine--tRNA ligase beta subunit OS=Mus musculus GN=Farsb PE=2 SV=2 Back     alignment and function description
>sp|Q9NSD9|SYFB_HUMAN Phenylalanine--tRNA ligase beta subunit OS=Homo sapiens GN=FARSB PE=1 SV=3 Back     alignment and function description
>sp|Q5R7F7|SYFB_PONAB Phenylalanine--tRNA ligase beta subunit OS=Pongo abelii GN=FARSB PE=2 SV=1 Back     alignment and function description
>sp|Q19713|SYFB_CAEEL Phenylalanine--tRNA ligase beta subunit OS=Caenorhabditis elegans GN=frs-2 PE=1 SV=2 Back     alignment and function description
>sp|Q550D2|SYFB_DICDI Phenylalanine--tRNA ligase beta subunit OS=Dictyostelium discoideum GN=phesB PE=3 SV=2 Back     alignment and function description
>sp|O13432|SYFB_CANAX Phenylalanine--tRNA ligase beta subunit OS=Candida albicans GN=FRS1 PE=2 SV=3 Back     alignment and function description
>sp|O42849|SYFB_SCHPO Phenylalanine--tRNA ligase beta subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=frs1 PE=3 SV=1 Back     alignment and function description
>sp|P15624|SYFB_YEAST Phenylalanine--tRNA ligase beta subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FRS1 PE=1 SV=3 Back     alignment and function description
>sp|Q9SGE9|SYFB_ARATH Probable phenylalanine--tRNA ligase beta subunit OS=Arabidopsis thaliana GN=At1g72550 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query180
321463870 589 hypothetical protein DAPPUDRAFT_214647 [ 0.838 0.256 0.677 6e-58
195108493 593 GI23417 [Drosophila mojavensis] gi|19391 0.855 0.259 0.670 9e-58
194746428 590 GF18885 [Drosophila ananassae] gi|190628 0.833 0.254 0.695 8e-57
21355211 589 CG5706 [Drosophila melanogaster] gi|1223 0.838 0.256 0.673 2e-56
195331574 589 GM23499 [Drosophila sechellia] gi|194121 0.838 0.256 0.673 2e-56
195504872 589 GE10814 [Drosophila yakuba] gi|194185366 0.838 0.256 0.673 2e-56
195573421 576 GD18307 [Drosophila simulans] gi|1942006 0.838 0.262 0.673 2e-56
194909828 589 GG12360 [Drosophila erecta] gi|190656656 0.827 0.252 0.688 3e-56
195036408 588 GH18917 [Drosophila grimshawi] gi|193893 0.811 0.248 0.707 4e-56
195394483 592 GJ10622 [Drosophila virilis] gi|19414258 0.8 0.243 0.701 5e-56
>gi|321463870|gb|EFX74882.1| hypothetical protein DAPPUDRAFT_214647 [Daphnia pulex] Back     alignment and taxonomy information
 Score =  228 bits (582), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 103/152 (67%), Positives = 130/152 (85%), Gaps = 1/152 (0%)

Query: 1   MCLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPL 60
           MCL   + G+G+ +SV IPPTRHDIIH CD+YED+AIA+GYNNI KT+P+  +IA Q PL
Sbjct: 334 MCLTATVEGTGS-ISVEIPPTRHDIIHACDVYEDVAIAFGYNNITKTLPKTNTIASQFPL 392

Query: 61  NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTT 120
           NKLSDQLR  +AQAGFTE LTF+LCS++D+S KLR+ +  +PAVH+ NPKTLEFQ+ARTT
Sbjct: 393 NKLSDQLRDQLAQAGFTEALTFSLCSKEDISEKLRKPLNSVPAVHVSNPKTLEFQVARTT 452

Query: 121 LVPGLLKTLAANKKMPLPLKLFEISDIVYKDA 152
           L+ GLLKT+AAN+KMPLP+KLFE+SD+V KD+
Sbjct: 453 LLSGLLKTIAANRKMPLPMKLFEVSDVVVKDS 484

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195108493|ref|XP_001998827.1| GI23417 [Drosophila mojavensis] gi|193915421|gb|EDW14288.1| GI23417 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|194746428|ref|XP_001955682.1| GF18885 [Drosophila ananassae] gi|190628719|gb|EDV44243.1| GF18885 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|21355211|ref|NP_651237.1| CG5706 [Drosophila melanogaster] gi|12230002|sp|Q9VCA5.1|SYFB_DROME RecName: Full=Probable phenylalanine--tRNA ligase beta subunit; AltName: Full=Phenylalanyl-tRNA synthetase beta subunit; Short=PheRS gi|7301135|gb|AAF56268.1| CG5706 [Drosophila melanogaster] gi|15292483|gb|AAK93510.1| SD03863p [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195331574|ref|XP_002032476.1| GM23499 [Drosophila sechellia] gi|194121419|gb|EDW43462.1| GM23499 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|195504872|ref|XP_002099265.1| GE10814 [Drosophila yakuba] gi|194185366|gb|EDW98977.1| GE10814 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|195573421|ref|XP_002104692.1| GD18307 [Drosophila simulans] gi|194200619|gb|EDX14195.1| GD18307 [Drosophila simulans] Back     alignment and taxonomy information
>gi|194909828|ref|XP_001982018.1| GG12360 [Drosophila erecta] gi|190656656|gb|EDV53888.1| GG12360 [Drosophila erecta] Back     alignment and taxonomy information
>gi|195036408|ref|XP_001989662.1| GH18917 [Drosophila grimshawi] gi|193893858|gb|EDV92724.1| GH18917 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|195394483|ref|XP_002055872.1| GJ10622 [Drosophila virilis] gi|194142581|gb|EDW58984.1| GJ10622 [Drosophila virilis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query180
FB|FBgn0039175589 CG5706 [Drosophila melanogaste 0.827 0.252 0.682 1.5e-53
UNIPROTKB|A8E4P2589 FARSB "Uncharacterized protein 0.85 0.259 0.660 2.4e-51
RGD|1303210589 Farsb "phenylalanyl-tRNA synth 0.838 0.256 0.655 1.1e-50
MGI|MGI:1346035589 Farsb "phenylalanyl-tRNA synth 0.844 0.258 0.644 2.2e-50
ZFIN|ZDB-GENE-021206-2590 farsb "phenylalanyl-tRNA synth 0.85 0.259 0.633 2.2e-50
UNIPROTKB|Q5ZJ61589 FARSB "Uncharacterized protein 0.85 0.259 0.647 1.2e-49
UNIPROTKB|E2R6K4593 FARSB "Uncharacterized protein 0.85 0.258 0.640 1.2e-49
UNIPROTKB|F6XQ20589 FARSB "Uncharacterized protein 0.85 0.259 0.640 1.2e-49
UNIPROTKB|F5H6Y1490 FARSB "Phenylalanine--tRNA lig 0.844 0.310 0.644 1.5e-49
UNIPROTKB|Q9NSD9589 FARSB "Phenylalanine--tRNA lig 0.844 0.258 0.644 1.5e-49
FB|FBgn0039175 CG5706 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 103/151 (68%), Positives = 123/151 (81%)

Query:     1 MCLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPL 60
             M L+ K+   G  + V IPPTRHD+IH CDIYED+AIAYGYNNI K++P F  IA+Q PL
Sbjct:   334 MYLEAKV--DGDSLVVKIPPTRHDVIHACDIYEDVAIAYGYNNIKKSLPAFMQIAKQFPL 391

Query:    61 NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTT 120
             NKL++QLR  +AQAGFTE LTF LCSRDD+  KL + ++ +PAVHIGNPKTLEFQ+ RTT
Sbjct:   392 NKLTEQLREQVAQAGFTEALTFTLCSRDDIGRKLNKNIDALPAVHIGNPKTLEFQVVRTT 451

Query:   121 LVPGLLKTLAANKKMPLPLKLFEISDIVYKD 151
             L+PGLLKTL AN+KMPLPLKLFEISD+V  D
Sbjct:   452 LLPGLLKTLVANRKMPLPLKLFEISDVVVAD 482
GO:0006432 "phenylalanyl-tRNA aminoacylation" evidence=ISS
GO:0009328 "phenylalanine-tRNA ligase complex" evidence=ISS
GO:0004826 "phenylalanine-tRNA ligase activity" evidence=ISS
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0003723 "RNA binding" evidence=IEA
UNIPROTKB|A8E4P2 FARSB "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1303210 Farsb "phenylalanyl-tRNA synthetase, beta subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1346035 Farsb "phenylalanyl-tRNA synthetase, beta subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-021206-2 farsb "phenylalanyl-tRNA synthetase, beta subunit" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJ61 FARSB "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2R6K4 FARSB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6XQ20 FARSB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F5H6Y1 FARSB "Phenylalanine--tRNA ligase beta subunit" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NSD9 FARSB "Phenylalanine--tRNA ligase beta subunit" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q19713SYFB_CAEEL6, ., 1, ., 1, ., 2, 00.51700.94440.2876yesN/A
Q9VCA5SYFB_DROME6, ., 1, ., 1, ., 2, 00.67320.83880.2563yesN/A
Q9NSD9SYFB_HUMAN6, ., 1, ., 1, ., 2, 00.64050.850.2597yesN/A
Q9WUA2SYFB_MOUSE6, ., 1, ., 1, ., 2, 00.64470.84440.2580yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.200.737
3rd Layer6.1.10.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query180
PLN02265597 PLN02265, PLN02265, probable phenylalanyl-tRNA syn 3e-63
TIGR00471551 TIGR00471, pheT_arch, phenylalanyl-tRNA synthetase 1e-43
PRK09616552 PRK09616, pheT, phenylalanyl-tRNA synthetase subun 1e-39
COG0072 650 COG0072, PheT, Phenylalanyl-tRNA synthetase beta s 4e-39
cd00769198 cd00769, PheRS_beta_core, Phenylalanyl-tRNA synthe 3e-23
PRK00629 791 PRK00629, pheT, phenylalanyl-tRNA synthetase subun 7e-22
TIGR00472 797 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase 6e-19
smart0087468 smart00874, B5, tRNA synthetase B5 domain 1e-09
pfam0348470 pfam03484, B5, tRNA synthetase B5 domain 1e-08
CHL00192 704 CHL00192, syfB, phenylalanyl-tRNA synthetase beta 9e-07
>gnl|CDD|215149 PLN02265, PLN02265, probable phenylalanyl-tRNA synthetase beta chain Back     alignment and domain information 
 Score =  204 bits (521), Expect = 3e-63
 Identities = 79/152 (51%), Positives = 107/152 (70%), Gaps = 1/152 (0%)

Query: 1   MCLQTKILG-SGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVP 59
           M LQ +     G  + VS+PPTR DI+H CD+ ED+AIAYGYNNIPK  P+  ++ +Q P
Sbjct: 339 MQLQAEQSSDDGCTIRVSVPPTRSDILHPCDVAEDVAIAYGYNNIPKRKPKSMTVGKQQP 398

Query: 60  LNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIART 119
           LN+ SD LR ++A AGFTEVLT+ LCS  +    L ++ +   AV IGNP++ +F++ RT
Sbjct: 399 LNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAMLNREDDGNSAVIIGNPRSADFEVVRT 458

Query: 120 TLVPGLLKTLAANKKMPLPLKLFEISDIVYKD 151
           +L+PGLLKTL  NK  P P+KLFE+SD+V  D
Sbjct: 459 SLLPGLLKTLGHNKDAPKPIKLFEVSDVVLLD 490

Length = 597
>gnl|CDD|232989 TIGR00471, pheT_arch, phenylalanyl-tRNA synthetase, beta subunit Back     alignment and domain information
>gnl|CDD|236592 PRK09616, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|223150 COG0072, PheT, Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238392 cd00769, PheRS_beta_core, Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information
>gnl|CDD|234804 PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|232990 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial Back     alignment and domain information
>gnl|CDD|197942 smart00874, B5, tRNA synthetase B5 domain Back     alignment and domain information
>gnl|CDD|202663 pfam03484, B5, tRNA synthetase B5 domain Back     alignment and domain information
>gnl|CDD|214391 CHL00192, syfB, phenylalanyl-tRNA synthetase beta chain; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 180
PLN02265597 probable phenylalanyl-tRNA synthetase beta chain 100.0
TIGR00471551 pheT_arch phenylalanyl-tRNA synthetase, beta subun 100.0
PRK00629 791 pheT phenylalanyl-tRNA synthetase subunit beta; Re 100.0
PRK09616552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 100.0
TIGR00472 798 pheT_bact phenylalanyl-tRNA synthetase, beta subun 100.0
COG0072 650 PheT Phenylalanyl-tRNA synthetase beta subunit [Tr 100.0
CHL00192 704 syfB phenylalanyl-tRNA synthetase beta chain; Prov 100.0
KOG2472|consensus578 100.0
cd00769198 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR 99.95
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 99.83
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 99.75
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 99.7
PF0348470 B5: tRNA synthetase B5 domain; InterPro: IPR005147 99.6
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 99.56
smart0087471 B5 tRNA synthetase B5 domain. This domain is found 99.51
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 99.49
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 99.3
PRK00488 339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 99.29
PRK06253 529 O-phosphoseryl-tRNA synthetase; Reviewed 99.08
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 98.29
TIGR00470 533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 97.95
COG0016 335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 97.52
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 97.42
PLN02853 492 Probable phenylalanyl-tRNA synthetase alpha chain 97.38
cd00773 261 HisRS-like_core Class II Histidinyl-tRNA synthetas 97.18
PRK00037 412 hisS histidyl-tRNA synthetase; Reviewed 97.08
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 96.88
TIGR00442 397 hisS histidyl-tRNA synthetase. This model finds a 96.74
PF13393 311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 96.68
PLN02530 487 histidine-tRNA ligase 96.5
PRK12421 392 ATP phosphoribosyltransferase regulatory subunit; 96.44
CHL00201 430 syh histidine-tRNA synthetase; Provisional 96.4
TIGR00443 314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 96.3
PRK12420 423 histidyl-tRNA synthetase; Provisional 96.27
PRK12292 391 hisZ ATP phosphoribosyltransferase regulatory subu 96.14
cd00670 235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 95.96
PRK12293 281 hisZ ATP phosphoribosyltransferase regulatory subu 95.83
cd00771 298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 95.65
PRK12295 373 hisZ ATP phosphoribosyltransferase regulatory subu 95.35
PRK14799 545 thrS threonyl-tRNA synthetase; Provisional 95.02
TIGR00418 563 thrS threonyl-tRNA synthetase. This model represen 94.94
PRK00413 638 thrS threonyl-tRNA synthetase; Reviewed 94.72
PRK12305 575 thrS threonyl-tRNA synthetase; Reviewed 94.69
PRK09194 565 prolyl-tRNA synthetase; Provisional 94.57
cd00772 264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 94.56
PRK12325 439 prolyl-tRNA synthetase; Provisional 94.46
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 94.45
PRK12444 639 threonyl-tRNA synthetase; Reviewed 94.34
cd00770 297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 94.33
TIGR00409 568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 94.3
PLN02788 402 phenylalanine-tRNA synthetase 94.14
PLN02908 686 threonyl-tRNA synthetase 93.83
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 92.93
PRK12294 272 hisZ ATP phosphoribosyltransferase regulatory subu 92.78
PLN02972 763 Histidyl-tRNA synthetase 92.31
cd00774 254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 90.46
COG0124 429 HisS Histidyl-tRNA synthetase [Translation, riboso 90.27
TIGR00408 472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 89.19
PRK08661 477 prolyl-tRNA synthetase; Provisional 89.07
TIGR00414 418 serS seryl-tRNA synthetase. This model represents 86.63
PLN02837 614 threonine-tRNA ligase 86.38
cd00669 269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 86.25
PRK03991 613 threonyl-tRNA synthetase; Validated 84.32
TIGR00469 460 pheS_mito phenylalanyl-tRNA synthetase, mitochondr 83.51
PRK05431 425 seryl-tRNA synthetase; Provisional 82.52
PF00152 335 tRNA-synt_2: tRNA synthetases class II (D, K and N 81.67
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain Back     alignment and domain information 
Probab=100.00  E-value=4.8e-43  Score=323.72  Aligned_cols=156  Identities=50%  Similarity=0.845  Sum_probs=136.8

Q ss_pred             cCCeEEEEcCCCCCCCCCchhhhhhhHhhhccCCCCCCCCCcccccCCChhhHHHHHHHHHHHHCCCceeecccccChhH
Q psy18006         10 SGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDD   89 (180)
Q Consensus        10 ~~~~~~v~vP~~R~DI~~~~DliEEIaR~~Gyd~i~~~~p~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~   89 (180)
                      +++.+.|+||+||.||++++||||||||+|||||||+++|...+.+..++.+++.+.+|+.|+++||+|++||+|+|+++
T Consensus       349 ~~~~~~V~vP~~R~DI~~~~DiiEEVar~yGydni~~~~P~~~~~g~~~~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~  428 (597)
T PLN02265        349 DGCTIRVSVPPTRSDILHPCDVAEDVAIAYGYNNIPKRKPKSMTVGKQQPLNQFSDLLRAEVAMAGFTEVLTWILCSHKE  428 (597)
T ss_pred             CCCceEEEcCCccccccchhhhhhhhHheeccccCCccCCCcccCCCCCHHHHHHHHHHHHHHHCCceeeeceeeCChHH
Confidence            34569999999999999999999999999999999999887555567788899999999999999999999999999987


Q ss_pred             HHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcceEeecceEecCC-------CcceeeeecC
Q psy18006         90 VSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDA-------TAGTLMFTPG  162 (180)
Q Consensus        90 ~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~iFEiG~V~~~~~-------~~~~l~~~~~  162 (180)
                      .+++|+...+....|+|+||+|+|+++||+||+||||+++++|++++.++++||||+||.++.       +..+||++++
T Consensus       429 ~~~~~~~~~~~~~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~~~~p~klFEiG~V~~~~~~~~~~~~e~~~la~~~~  508 (597)
T PLN02265        429 NFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKPIKLFEVSDVVLLDESKDVGARNSRRLAALYC  508 (597)
T ss_pred             HHHhhcCCccCCceEEECCCcchhHHHHHHhhHHHHHHHHHHhhcCCCCeeEEEeEeEEecCCcccCCcchhhEEEEEEE
Confidence            556676542222579999999999999999999999999999999766999999999996642       4569999999


Q ss_pred             CCC
Q psy18006        163 GNR  165 (180)
Q Consensus       163 G~~  165 (180)
                      |+.
T Consensus       509 g~~  511 (597)
T PLN02265        509 GTT  511 (597)
T ss_pred             CCC
Confidence            965

>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit Back     alignment and domain information
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial Back     alignment and domain information
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional Back     alignment and domain information
>KOG2472|consensus Back     alignment and domain information
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>smart00874 B5 tRNA synthetase B5 domain Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>PLN02530 histidine-tRNA ligase Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>PLN02788 phenylalanine-tRNA synthetase Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query180
3l4g_B589 Crystal Structure Of Homo Sapiens Cytoplasmic Pheny 2e-54
2rhq_B 795 Phers From Staphylococcus Haemolyticus- Rational Pr 2e-09
2rhs_B 800 Phers From Staphylococcus Haemolyticus- Rational Pr 2e-09
2iy5_B 785 Phenylalanyl-Trna Synthetase From Thermus Thermophi 2e-05
1pys_B 785 Phenylalanyl-Trna Synthetase From Thermus Thermophi 5e-05
3pco_B 795 Crystal Structure Of E. Coli Phenylalanine-Trna Syn 1e-04
>pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic Phenylalanyl-T Synthetase Length = 589 Back     alignment and structure 
Iteration: 1

 Score =  207 bits (527), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 98/153 (64%), Positives = 122/153 (79%)
Query: 1   MCLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPL 60
           M L+++++G G ++ + IPPTR DIIH CDI ED AIAYGYNNI  T+P+  +IA Q PL
Sbjct: 334 MYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPL 393
Query: 61  NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTT 120
           NKL++ LR D+A AGFTE LTFALCS++D++ KL   +    AVHI NPKT EFQ+ARTT
Sbjct: 394 NKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTT 453
Query: 121 LVPGLLKTLAANKKMPLPLKLFEISDIVYKDAT 153
           L+PGLLKT+AAN+KMPLPLKLFEISDIV KD+ 
Sbjct: 454 LLPGLLKTIAANRKMPLPLKLFEISDIVIKDSN 486
>pdb|2RHQ|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein Engineering And Inhibitor Studies Length = 795 Back     alignment and structure
>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein Engineering And Inhibitor Studies Length = 800 Back     alignment and structure
>pdb|2IY5|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus Complexed With Trna And A Phenylalanyl-Adenylate Analog Length = 785 Back     alignment and structure
>pdb|1PYS|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus Length = 785 Back     alignment and structure
>pdb|3PCO|B Chain B, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase Complexed With Phenylalanine And Amp Length = 795 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query180
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 6e-63
2rhq_B 795 Phenylalanyl-tRNA synthetase beta chain; heterotet 7e-25
1b7y_B 785 Phers, protein (phenylalanyl-tRNA synthetase); enz 3e-23
3pco_B 795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 2e-22
2cxi_A348 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 4e-11
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 3e-09
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 6e-09
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Length = 589 Back     alignment and structure
 Score =  203 bits (517), Expect = 6e-63
 Identities = 98/156 (62%), Positives = 122/156 (78%)

Query: 1   MCLQTKILGSGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPL 60
           M L+++++G G ++ + IPPTR DIIH CDI ED AIAYGYNNI  T+P+  +IA Q PL
Sbjct: 334 MYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPL 393

Query: 61  NKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTT 120
           NKL++ LR D+A AGFTE LTFALCS++D++ KL   +    AVHI NPKT EFQ+ARTT
Sbjct: 394 NKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTT 453

Query: 121 LVPGLLKTLAANKKMPLPLKLFEISDIVYKDATAGT 156
           L+PGLLKT+AAN+KMPLPLKLFEISDIV KD+    
Sbjct: 454 LLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDV 489
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Length = 795 Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Length = 785 Back     alignment and structure
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Length = 795 Back     alignment and structure
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii} Length = 348 Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Length = 213 Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Length = 213 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query180
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 100.0
3pco_B 795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 100.0
2rhq_B 795 Phenylalanyl-tRNA synthetase beta chain; heterotet 100.0
1b7y_B 785 Phers, protein (phenylalanyl-tRNA synthetase); enz 100.0
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 99.95
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 99.95
2du3_A 534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 99.93
2rhq_A 294 Phenylalanyl-tRNA synthetase alpha chain; heterote 99.93
1b7y_A 350 Phers, protein (phenylalanyl-tRNA synthetase); enz 99.59
2du7_A 549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 99.53
3l4g_A 508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 99.46
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 99.46
2odr_B 648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 99.46
2odr_A 665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 99.46
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 99.46
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 99.46
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 99.42
3pco_A 327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 99.39
3cmq_A 415 Phenylalanyl-tRNA synthetase, mitochondrial; class 98.94
3net_A 465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 96.89
1z7m_A 344 ATP phosphoribosyltransferase regulatory subunit; 96.77
3rac_A 373 Histidine-tRNA ligase; structural genomics, PSI-bi 96.73
1h4v_B 421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 96.65
3od1_A 400 ATP phosphoribosyltransferase regulatory subunit; 96.61
1wu7_A 434 Histidyl-tRNA synthetase; ligase, structural genom 96.39
1htt_A 423 Histidyl-tRNA synthetase; complex (tRNA synthetase 96.39
4e51_A 467 Histidine--tRNA ligase; seattle structural genomic 96.06
3lc0_A 456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 95.78
4g84_A 464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 95.65
1qe0_A 420 Histidyl-tRNA synthetase; class II tRNA synthetase 95.41
4g85_A 517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 95.39
2i4l_A 458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 95.36
3a32_A 471 Probable threonyl-tRNA synthetase 1; aeropyrum per 94.93
1nyr_A 645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 94.9
2j3l_A 572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 94.71
1evl_A 401 Threonyl-tRNA synthetase; amino acid recognition, 94.18
1nj8_A 459 Proline-tRNA synthetase, proline--tRNA ligase; cla 93.49
1hc7_A 477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 93.05
1qf6_A 642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 92.53
3uh0_A 460 Threonyl-tRNA synthetase, mitochondrial; threonine 91.85
1usy_A 275 ATP phosphoribosyltransferase regulatory subunit; 91.48
2dq3_A 425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 90.89
1ses_A 421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 89.19
1nj1_A 501 PROR, proline-tRNA synthetase, proline--tRNA ligas 88.17
3err_A 536 Fusion protein of microtubule binding domain from 87.17
3ial_A 518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 86.76
4hvc_A 519 Bifunctional glutamate/proline--tRNA ligase; ligas 85.99
1wle_A 501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 85.76
2dq0_A 455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 84.37
3vbb_A 522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 83.99
3lss_A 484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 83.02
2zt5_A 693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 81.37
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=4.5e-44  Score=328.83  Aligned_cols=164  Identities=59%  Similarity=0.875  Sum_probs=143.4

Q ss_pred             ccceEEee--cCCeEEEEcCCCCCCCCCchhhhhhhHhhhccCCCCCCCCCcccccCCChhhHHHHHHHHHHHHCCCcee
Q psy18006          2 CLQTKILG--SGAEVSVSIPPTRHDIIHTCDIYEDIAIAYGYNNIPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFTEV   79 (180)
Q Consensus         2 ~~~~~v~~--~~~~~~v~vP~~R~DI~~~~DliEEIaR~~Gyd~i~~~~p~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev   79 (180)
                      ++||++..  +++.|.|+||+||.||++++||||||||+|||||||.++|.....+..++.+++.+++|+.|+++||+|+
T Consensus       333 ~Lgf~~~~~~~~~~~~V~vPs~R~DI~~e~DLiEEVaRiyGYdnIp~tlP~~~~~g~~~~~~~~~~~ir~~l~~~Gf~Ev  412 (589)
T 3l4g_B          333 RMYLKSEVIGDGNQIEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEA  412 (589)
T ss_dssp             HTTCEEEECSSSSEEEEEECSSCTTCCSHHHHHHHHHHHHCGGGSCCCCCCCCCCCCCCHHHHHHHHHHHHHHHTTCEEC
T ss_pred             HCCCeEEEcCCCceEEEECCCCccccCCccHHHHHHHHHhCcccCCCcCCCccccCCCCHHHHHHHHHHHHHHHCCCEEE
Confidence            45666653  3557999999999999999999999999999999999999876677788999999999999999999999


Q ss_pred             ecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHHHHHHHHHHhhCCCCCcceEeecceEecCCC------
Q psy18006         80 LTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLPLKLFEISDIVYKDAT------  153 (180)
Q Consensus        80 ~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlpsLL~~l~~N~~~~~~~~iFEiG~V~~~~~~------  153 (180)
                      +||+|++++..++.|+++.+..+.|+|.||+|+|+++||+||+||||+++++|++++.++++||+|+||.++++      
T Consensus       413 itysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~vrlFEiG~Vf~~d~~~~~~~~  492 (589)
T 3l4g_B          413 LTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDVGAK  492 (589)
T ss_dssp             CCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCEEEEEEEEEEEECTTSTTSEE
T ss_pred             ecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCceEEEEeeeEEecCCccccCCc
Confidence            99999999865566776543346899999999999999999999999999999887668999999999987653      


Q ss_pred             -cceeeeecCCCC
Q psy18006        154 -AGTLMFTPGGNR  165 (180)
Q Consensus       154 -~~~l~~~~~G~~  165 (180)
                       ..+|+++++|+.
T Consensus       493 e~~~la~~~~g~~  505 (589)
T 3l4g_B          493 NYRHLCAVYYNKN  505 (589)
T ss_dssp             EEEEEEEEEESSS
T ss_pred             cccEEEEEEECCC
Confidence             348999999975
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 180
d1jjcb5207 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheR 7e-09
d1jjcb275 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-bet 3e-07
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Length = 207 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain
species: Thermus thermophilus [TaxId: 274]

 Score = 51.0 bits (121), Expect = 7e-09
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 7/110 (6%)

Query: 44  IPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPA 103
           +P   P   +   + P  K   +LR  ++  GF EV T++    +D     R+     P 
Sbjct: 2   LPAFFPAPDNRGVEAPYRKE-QRLREVLSGLGFQEVYTYSFMDPED----ARRFRLDPPR 56

Query: 104 VHIGNPKTLEFQIARTTLVPGLLKTLAANKKMPLP--LKLFEISDIVYKD 151
           + + NP   E    RT L PGL++ L  N  +  P    LFE+  +  + 
Sbjct: 57  LLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFRER 106
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Length = 75 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query180
d1jjcb5207 Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, 99.94
d1jjcb275 Domains B1 and B5 of PheRS-beta, PheT {Thermus the 99.77
d1jjca_ 266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 97.19
d1wu7a2 327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 95.91
d1z7ma1 318 ATP phosphoribosyltransferase regulatory subunit H 95.43
d1nj8a3 268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 95.25
d1kmma2 322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 94.18
d1nyra4 291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 93.91
d1hc7a2 272 Prolyl-tRNA synthetase (ProRS) {Thermus thermophil 93.55
d1h4vb2 324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 91.96
d1nj1a3 265 Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth 90.91
d1qe0a2 325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 88.47
d1c0aa3 346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 85.86
d1qf6a4 291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 85.32
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=7e-28  Score=193.02  Aligned_cols=123  Identities=23%  Similarity=0.281  Sum_probs=102.6

Q ss_pred             CCCCCCCcccccCCChhhHHHHHHHHHHHHCCCceeecccccChhHHHHHhccccCCCCcEEeeCCcccchHHHHHhhHH
Q psy18006         44 IPKTMPRFASIARQVPLNKLSDQLRGDIAQAGFTEVLTFALCSRDDVSVKLRQKMEFIPAVHIGNPKTLEFQIARTTLVP  123 (180)
Q Consensus        44 i~~~~p~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~~~~~~~~v~l~NPis~e~~~lR~sLlp  123 (180)
                      ||..+|..... +....++++++||+.|+++||+|++||+|+|++.+ +.++..   ...|+|.||+|+|+++||+||+|
T Consensus         2 iP~~lP~~~~~-~~~~~~~~~~~ir~~L~~~Gf~Ev~tysf~s~~~~-~~~~~~---~~~i~l~NPis~e~~~lR~sLlp   76 (207)
T d1jjcb5           2 LPAFFPAPDNR-GVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDA-RRFRLD---PPRLLLLNPLAPEKAALRTHLFP   76 (207)
T ss_dssp             CCCCCCCGGGT-TTTHHHHHHHHHHHHHHHHTCEECCCCSEECTTHH-HHTTCC---CCSCEESSCSSGGGSEECSCSHH
T ss_pred             CCCCCCCCCCC-CCChhHHHHHHHHHHHHHCCcchhcCCCcCCHHHH-HhhcCC---CCcEEEeCCcchhhhhhhhhcch
Confidence            78887764333 44456788999999999999999999999999974 666542   35799999999999999999999


Q ss_pred             HHHHHHHHhhCC-CCC-cceEeecceEecCCCcceeeeecCCCCCccchhh
Q psy18006        124 GLLKTLAANKKM-PLP-LKLFEISDIVYKDATAGTLMFTPGGNRTRDLAIS  172 (180)
Q Consensus       124 sLL~~l~~N~~~-~~~-~~iFEiG~V~~~~~~~~~l~~~~~G~~~~~~w~~  172 (180)
                      |||+++++|+++ ..+ +++||||+||.+.+ +.+++++++|.+...+|..
T Consensus        77 gLL~~~~~N~~r~~~~~~~lFEiG~vf~~~~-~~~~~~~~~g~~~~~~~~~  126 (207)
T d1jjcb5          77 GLVRVLKENLDLDRPERALLFEVGRVFRERE-ETHLAGLLFGEGVGLPWAK  126 (207)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEEEEEEEESSSE-EEEEEEEEEESCBSCTTSS
T ss_pred             HHHHHHHhCcccccccceeeEeeeeeeeccc-cccchhhhhhccccccccc
Confidence            999999999875 344 79999999997654 4678899999999999974
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure